Psyllid ID: psy14896

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810---
Protein Sequence
MSLISSCLFIFVSFHSVFSQTIDELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELGHQMTDLLLKAV
Secondary Structure (PSIPRED)
ccccEEEEEEEEEccccEEEEcccccccccccEEEEccEEEEEEccccEEcccccccccEEEEEEEEEcccccEEEEEEEEEEccccccEEEEEEEEEcccEEEcccccEEEEEEEEEcccccEEEEEccEEEEEEcccEEEEEEEccccccEEEEEEEEEEEEcEEccccEEEEEEEEEccccccccccEEEEcccEEEEEcccccccccEEEEEEEEEEcccEEEEEEccEEccccccEEcccccccEEEEEccEEEEEccccccccEEEEEEEEEccEEEEEEEEEEEEEEccccccccccEEEEccccEEEEccccccccccEEEEEEccccccccccccEEEccccEEEEccccccccEEEEEEEEEcccccEEEcccEEEEEEcccccccccccccccccccccccccccEEEEEEEEEEcccEEEEEEcccccccccEEEEcccEEEEccccccccEEEEEcccEEEcccEEEccccEEEEEEEEEEcccEEEEEEccEEcccccccccccccccEEEEEccEEEEEccccccccEEEEEEEEEcccEEEEEEEEEEEEEccccccccccEEEEccccEEEEEcccccccccEEEEEEccEEccccccccEEEcccccEEEccccccccEEEEEEEEEccccccccccEEEEEEccccccccccccccccccccccccccccEEEEEEEEEccccEEEEEEccEEcccccEEEEEccEEEEccccccccEEEEEEEEEccccEEEEEEEEEEccccccccccEEEEcccccEEEEEEEEEEcccEEEEEEccEEccccccEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccEEccccccEEEEEcccEEEEccccccccccccEEEEcccccEEccccEEEEEEEEEEEEcccccEEEEEEEEccccccccEEEEEEcccccccEEEEcccEEEEEEEEEcccccEEEEEEccEEccccccEEEEEEccEEEEEEEEEEEccccEEEEEEEEccccEEEEEEEEEEcccccccEEEccccccEEEccEcccccEEEEEEEEEcccccEEEEEEcccEEEcccEEEEEEcccEEEEEEccEEEEEEEEEccccEEEEEEEEEccccccccEEEEEEccccccccccccEEEEEccEEEEEEEccccccccEEEEEEccEEEEccccEEEEEEcccEEEEEEEEcccccEEEEEEEEcccccccccEEEEEccccccccccccccccccccccEEEEcccEEEEEEEEccccccEEEEEEccEEEccccEEEccEEEEEEEEEcccccEEEEcccccccccccccccccEEEEEEEccccccEEEEEEcccEEccccEEEEEEcccEEEEEEccEEEEEEEcccccccEEEEEEEEcccccccccEEEEEEcccccccccccEEEEEcccEEEEEEccccccccEEEEEEccEEccccccEEEEEEcccEEEEEEccccccEEEEEEEEEccccccccccEEEEEcccccccccccccccccccccEEEEcccEEEEEEEEEcccccEEEEEEccEEcccccEEEEccEEEEEEccccccccEEEEEEEEcccccEEEEEEEEEccccccccccEEEEEcccEEEEEEEEEcccccEEEEEEccEEccccccEEEEEc
Coil and Loop (DISEMBL)
mslissclFIFVSFHSVFSQTIDELELRCPQHWVQYRDSCYRFvksplktrndaklncksldsdlanvndadehgFIMYQlfwqdpqrrkwyfggtqqspnlwvnedgtnlneldaaflpepadnvqrdYLAYSFSQSLKrwgfervtgmeplLFICEASIQKLHYLlnddrtyqygmdienpdkiprgpyfikqptdvvfdlskrsilnditlscyaggypnpsyewfkedYVQDRLVAnlidplsdkrftlsggnliindprqvedrgsyhckasnkFGSIISESVQLAFGFigefnlkrapeignqnwgkamfcdpptnypgvnyywardyfpnfveeDKRVFVSYDGALYFSALEQidagnyscnvqskvsdtgrngpffplkvfphsnfqqlkfpnnfpktfpeapkagdkVRLECVafgypvpsynwtrrgsplprnayfenfnriltipnvkmrgpyfikqptdvvfdlskrsilnditlscyaggypnpsyewfkedYVQDRLVAnlidplsdkrftlsggnliindprqvedrgsyhckasnkFGSIISESVQLAFGFigefnlkrapeignqnwgkamfcdpptnypgvnyywardyfpnfveeDKRVFVSYDGALYFSALEQidagnyscnvqskvsdtgrngpffplkvfphsnfqqlkfpnnfpktfpeapkagdkVRLECVafgypvpsynwtrrgsplprnayfenfnriltipnvkvedqgeYICRasndrsaleSSVTISiqaepnftipltdkhmdnqadltwtceafgvpdvtyswfrngelgHQMTDLLLKAV
Flexible Loop (DISEMBL)
MSLISSCLFIFVSFHSVFSQTIDELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGypvpsynwtrrgsPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGypvpsynwtrrgsPLPRNAYFENFNRILTipnvkvedqgEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELGHQMTDLLLKAV
Low Complexity Region (SEG)
MSLISSCLFIFVSFHSVFSQTIDELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELGHQMTDLLLKAV
Disordered region (IsUnstruct)
***ISSCLFIFVSFHSVFSQTIDELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFP***KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFP***KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASN*******SVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELGHQMTDLL****
Disordered Region (DISOPRED)
**LISSCLFIFVSFHSVFSQTIDELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKW*************NEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQ***************LLFICEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVA**************GGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIG****************KAMFCDPPTNYPGVNYYWARDYFPN********FVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHS******************PKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDV*******SILNDITLSCYAGGYPNPSYEWFKEDYVQDRL*************TLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEF**********QNWGKAMFCDPPTNYPGVNYYWARDYFP****EDK*VFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELGHQMT*LLLKAV
Disordered Region (DISEMBL)
MSLISSCLFIFVSFHSVFSQTIDELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASN********VTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELGHQMTDLLLKAV
Disordered Region (DISPRO)
****SSCLFIFVSFHSVFSQTIDELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELGHQMTDLLLKAV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLISSCLFIFVSFHSVFSQTIDELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELGHQMTDLLLKAV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	813	2.2.26 [Sep-21-2011]
Q9VN14	1390	Contactin OS=Drosophila m	yes	N/A	0.744	0.435	0.409	1e-134
Q07409	1028	Contactin-3 OS=Mus muscul	yes	N/A	0.677	0.535	0.281	1e-56
Q62682	1028	Contactin-3 OS=Rattus nor	yes	N/A	0.677	0.535	0.275	6e-56
Q9P232	1028	Contactin-3 OS=Homo sapie	yes	N/A	0.676	0.535	0.264	4e-52
Q90W79	1027	Contactin-5 OS=Gallus gal	no	N/A	0.400	0.317	0.333	8e-52
Q7ZW34	1056	Contactin-5 OS=Danio reri	yes	N/A	0.402	0.309	0.332	1e-51
Q9JMB8	1028	Contactin-6 OS=Mus muscul	no	N/A	0.678	0.536	0.271	4e-51
Q62845	1026	Contactin-4 OS=Rattus nor	no	N/A	0.665	0.527	0.269	8e-51
Q69Z26	1026	Contactin-4 OS=Mus muscul	no	N/A	0.671	0.532	0.271	1e-50
P97528	1028	Contactin-6 OS=Rattus nor	no	N/A	0.674	0.533	0.270	2e-50

>sp|Q9VN14|CONT_DROME Contactin OS=Drosophila melanogaster GN=Cont PE=1 SV=2

 Score =  480 bits (1236), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 278/679 (40%), Positives = 374/679 (55%), Gaps = 74/679 (10%)

Query: 128 RDYLAYSFSQSLKRWGFERVTGMEPLLFICEASI----QKLHYLLNDDRTYQYGMDIENP 183
           RD + Y+FS+   RW F     +E  LFICE+ +      ++  L+D R Y YG+DI + 
Sbjct: 296 RDRVVYAFSKKRDRWMFMPAYEIELNLFICESKVLYSSDNVNIKLDDKRPYHYGLDINDM 355

Query: 184 DKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLI 243
           ++IPRGPYF+KQP D  FD++K  ++ND+TLSC A GYP PSY W++E YV DRL    I
Sbjct: 356 ERIPRGPYFVKQPNDTTFDVNKNRLINDVTLSCLANGYPTPSYTWYREVYVDDRLEYQKI 415

Query: 244 DPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRA 303
           DPL+  R+T+SGGNLII +P+Q  D+G+YHC A NKFG I SES  L FGFI EFNLKR+
Sbjct: 416 DPLAQDRYTISGGNLIIYEPKQALDQGAYHCVAENKFGRIRSESAHLNFGFIMEFNLKRS 475

Query: 304 PEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDA 363
            E    NWGK++FCDPP +YP V YYWARDYFPNFVEED+RVFVS DGALYFS +E +D 
Sbjct: 476 AETSEMNWGKSIFCDPPQHYPDVRYYWARDYFPNFVEEDQRVFVSRDGALYFSFIETVDR 535

Query: 364 GNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVA 423
            NYSC VQ+ VSDTGRNGPFFPL+V P+SN+Q L F N FPK FPEAP AGD++RLEC+A
Sbjct: 536 ANYSCTVQTLVSDTGRNGPFFPLRVTPNSNYQALIFANTFPKVFPEAPVAGDEIRLECMA 595

Query: 424 FGYPVPSYNWTRRGSPLPRNAYFENFNRILTIP--------------------------- 456
           FGYP+PSYNWTR+G PL RNAY  N+ R+L I                            
Sbjct: 596 FGYPIPSYNWTRQGLPLQRNAYTINYGRVLIIQNATTNDNGEYSCTITNPRKTLMKSIYI 655

Query: 457 NVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLI 516
           N++MR P F     D++ D +     +D+T  C A   P+ +Y W+K         A  +
Sbjct: 656 NIQMR-PQFTIPLKDMIKDYN-----SDVTFICEAFAIPDANYTWYKN--------AERL 701

Query: 517 DP--LSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK 574
           DP  ++  R+ +    L I    + +D   Y C A N+  +  S +          F  K
Sbjct: 702 DPANINRDRYIIQDNVLTIKFLEKDKDDAMYQCGAQNQLKTSFSSAQLRVLSMKPSF--K 759

Query: 575 RAP---EI-GNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSA 630
           + P   E+    N    + CDP    P   + W +D         +R+  S  G L  S 
Sbjct: 760 KHPLESEVYAVYNGNTTIVCDPEAA-PRPKFQWKKDGQVIGSGGHRRILPS--GTLTISP 816

Query: 631 LEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKV 690
             + D G Y+C   ++      +     L        Q+++F    P+      K  D +
Sbjct: 817 TSRDDEGIYTCIASNQAGTDESHARVIVL--------QEIRFIETPPQRI--VSKEHDLI 866

Query: 691 RLEC-VAFGYPVP-SYNWTRRGSPLPRNA-----YFENFNRILTIPNVKVEDQGEYICRA 743
            L C  AF   +  +Y W   G  L  N         ++NR LT+ N  + D G+Y C  
Sbjct: 867 FLHCEAAFDELLDIAYVWKHNGEVLKNNHDGTGRIIVDWNR-LTVHNTSMRDAGDYECVV 925

Query: 744 SNDRSALESSVTISIQAEP 762
            +  + + S  ++SI+  P
Sbjct: 926 KSAVNEISSKTSVSIEGAP 944

Required for organization of septate junctions and paracellular barrier functions. Septate junctions, which are the equivalent of vertebrates tight junctions, are characterized by regular arrays of transverse structures that span the intermembrane space and form a physical barrier to diffusion.
Drosophila melanogaster (taxid: 7227)

>sp|Q07409|CNTN3_MOUSE Contactin-3 OS=Mus musculus GN=Cntn3 PE=2 SV=2

 Score =  221 bits (564), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 180/640 (28%), Positives = 275/640 (42%), Gaps = 89/640 (13%)

Query: 188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 247
           +GP FIK+P++ +F +        ITL+C A G P+P Y W        +L  + ID   
Sbjct: 24  QGPVFIKEPSNSIFPVDSED--KKITLNCEARGNPSPHYRW--------QLNGSDIDTSL 73

Query: 248 DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIG 307
           D R+ L+GGNLI+ +P +  D GSY C A+N  G+I+S   +L F ++  F  +    + 
Sbjct: 74  DHRYKLNGGNLIVINPNRNWDTGSYQCFATNSLGTIVSREAKLQFAYLENFKTRMRSTVS 133

Query: 308 -NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD-GALYFSALEQIDAGN 365
             +  G  + C PP +   ++Y W  + +P+FVEED R FVS + G LY + +E  D GN
Sbjct: 134 VREGQGVVLLCGPPPHSGELSYAWVFNEYPSFVEEDSRRFVSQETGHLYIAKVEPSDVGN 193

Query: 366 YSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQL--KFPNNFPKTFPEAPKAGDKVRLECVA 423
           Y+C V S V++T   G   PL +       +   K    FP+T P A   G  VRLEC A
Sbjct: 194 YTCVVTSTVTNTRVLGSPTPLVLRSDGVMGEYEPKIEVQFPETLPAA--KGSTVRLECFA 251

Query: 424 FGYPVPSYNWTRR-GSPLPRNAYFENFNRILTIPNVKM-------------RG------- 462
            G PVP  NW R  G P P       FN +L I N +              RG       
Sbjct: 252 LGNPVPQINWRRSDGMPFPNKIKLRKFNGMLEIQNFQQEDTGSYECIAENSRGKNVARGR 311

Query: 463 ------PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLI 516
                 PY+++   DV     + ++ + +   C A G P PSY W K     D LV    
Sbjct: 312 LTYYAKPYWLQLLRDV-----EIAVEDSLYWECRASGKPKPSYRWLKNG---DALVL--- 360

Query: 517 DPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRA 576
               ++R  +  G L I +   V D G + C A NK G I S +         +F+    
Sbjct: 361 ----EERIQIENGALTITN-LNVTDSGMFQCIAENKHGLIYSSAELKVVASAPDFSRNPM 415

Query: 577 PEIGNQNWGKAMFCD-PPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQID 635
            ++     G  +  D  P   P    +W +      V E  RV    DG L    + + D
Sbjct: 416 KKMVQVQVGSLVILDCKPRASPRALSFWKKGDM--MVREQARVSFLNDGGLKIMNVTKAD 473

Query: 636 AGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECV 695
           AG Y+C  +++      NG    +   P    + +  P+N           G+ V L C 
Sbjct: 474 AGTYTCTAENQFGKA--NGTTHLVVTEPT---RIILAPSNMDVAV------GESVILPCQ 522

Query: 696 AFGYPVPS--YNWTRRGSPLPRNAYFENFNRI-------LTIPNVKVEDQGEYICRASND 746
               P+    + W   G+         +F ++       L I N++++  G+Y+C     
Sbjct: 523 VQHDPLLDIMFAWYFNGALTDFKKDGSHFEKVGGSSSGDLMIRNIQLKHSGKYVCMVQTG 582

Query: 747 RSALESSVTISIQAEP----NFTIPLTDKHMDNQADLTWT 782
             ++ S+  + ++  P    N  +   D+  D  A L+WT
Sbjct: 583 VDSVSSAAELIVRGSPGPPENVKV---DEITDTTAQLSWT 619

Contactins mediate cell surface interactions during nervous system development. Has some neurite outgrowth-promoting activity.

Mus musculus (taxid: 10090)

>sp|Q62682|CNTN3_RAT Contactin-3 OS=Rattus norvegicus GN=Cntn3 PE=1 SV=1

 Score =  219 bits (559), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 176/640 (27%), Positives = 277/640 (43%), Gaps = 89/640 (13%)

Query: 188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 247
           +GP F+K+P++ +F +        ITL+C A G P+P Y W        +L  + ID   
Sbjct: 24  QGPVFVKEPSNSIFPVGSED--KKITLNCEARGNPSPHYRW--------QLNGSDIDTSL 73

Query: 248 DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIG 307
           D R+ L+GGNLI+ +P +  D GSY C A+N  G+I+S   +L F ++  F  +    + 
Sbjct: 74  DHRYKLNGGNLIVINPNRNWDTGSYQCFATNSLGTIVSREAKLQFAYLENFKSRMRSRVS 133

Query: 308 -NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD-GALYFSALEQIDAGN 365
             +  G  + C PP +   ++Y W  + +P+FVEED R FVS + G LY + +E  D GN
Sbjct: 134 VREGQGVVLLCGPPPHSGELSYAWVFNEYPSFVEEDSRRFVSQETGHLYIAKVEPSDVGN 193

Query: 366 YSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQL--KFPNNFPKTFPEAPKAGDKVRLECVA 423
           Y+C V S V++    G   PL +       +   K    FP+T P A   G  V+LEC A
Sbjct: 194 YTCVVTSTVTNARVLGSPTPLVLRSDGVMGEYEPKIELQFPETLPAA--KGSTVKLECFA 251

Query: 424 FGYPVPSYNWTRR-GSPLPRNAYFENFNRILTIPNVKM-------------------RG- 462
            G PVP  NW R  G P P       FN +L IPN +                    RG 
Sbjct: 252 LGNPVPQINWRRSDGMPFPTKIKLRKFNGVLEIPNFQQEDTGSYECIAENSRGKNVARGR 311

Query: 463 ------PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLI 516
                 PY+++   DV     + ++ + +   C A G P PSY W K     D LV    
Sbjct: 312 LTYYAKPYWVQLLKDV-----ETAVEDSLYWECRASGKPKPSYRWLKNG---DALVL--- 360

Query: 517 DPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRA 576
               ++R  +  G L I +   V D G + C A NK G I S +         +F+    
Sbjct: 361 ----EERIQIENGALTIAN-LNVSDSGMFQCIAENKHGLIYSSAELKVLASAPDFSRNPM 415

Query: 577 PEIGNQNWGKAMFCD-PPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQID 635
            ++     G  +  D  P+  P    +W +      V E  R+ +  DG L    + + D
Sbjct: 416 KKMIQVQVGSLVILDCKPSASPRALSFWKKG--DTVVREQARISLLNDGGLKIMNVTKAD 473

Query: 636 AGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECV 695
           AG Y+C  +++      NG    +   P    + +  P+N           G+ + L C 
Sbjct: 474 AGIYTCIAENQFGKA--NGTTQLVVTEPT---RIILAPSNMDVAV------GESIILPCQ 522

Query: 696 AFGYPVPS--YNWTRRGSPLPRNAYFENFNRI-------LTIPNVKVEDQGEYICRASND 746
               P+    + W   G+         +F ++       L I N++++  G+Y+C     
Sbjct: 523 VQHDPLLDIMFAWYFNGTLTDFKKDGSHFEKVGGSSSGDLMIRNIQLKHSGKYVCMVQTG 582

Query: 747 RSALESSVTISIQAEP----NFTIPLTDKHMDNQADLTWT 782
             ++ S+  + ++  P    N  +   D+  D  A L+WT
Sbjct: 583 VDSVSSAAELIVRGSPGPPENVKV---DEITDTTAQLSWT 619

Contactins mediate cell surface interactions during nervous system development. Has some neurite outgrowth-promoting activity.

Rattus norvegicus (taxid: 10116)

>sp|Q9P232|CNTN3_HUMAN Contactin-3 OS=Homo sapiens GN=CNTN3 PE=1 SV=3

 Score =  207 bits (526), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 169/639 (26%), Positives = 275/639 (43%), Gaps = 89/639 (13%)

Query: 188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 247
           +GP FIK+P++ +F +        ITL C A G P+P Y W        +L  + ID   
Sbjct: 24  QGPVFIKEPSNSIFPVGSED--KKITLHCEARGNPSPHYRW--------QLNGSDIDMSM 73

Query: 248 DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIG 307
           + R+ L+GGNL++ +P +  D G+Y C A+N  G+I+S   +L F ++  F  K    + 
Sbjct: 74  EHRYKLNGGNLVVINPNRNWDTGTYQCFATNSLGTIVSREAKLQFAYLENFKTKMRSTVS 133

Query: 308 -NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD-GALYFSALEQIDAGN 365
             +  G  + C PP +   ++Y W  + +P+FVEED R FVS + G LY S +E  D GN
Sbjct: 134 VREGQGVVLLCGPPPHSGELSYAWIFNEYPSFVEEDSRRFVSQETGHLYISKVEPSDVGN 193

Query: 366 YSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQL--KFPNNFPKTFPEAPKAGDKVRLECVA 423
           Y+C V S V++    G   PL +       +   K    FP+T P A   G  V+LEC A
Sbjct: 194 YTCVVTSMVTNARVLGSPTPLVLRSDGVMGEYEPKIEVQFPETLPAA--KGSTVKLECFA 251

Query: 424 FGYPVPSYNWTRR-GSPLPRNAYFENFNRILTIPNVKM-------------RG------- 462
            G P+P  NW R  G P         F+ +L IPN +              RG       
Sbjct: 252 LGNPIPQINWRRSDGLPFSSKIKLRKFSGVLEIPNFQQEDAGSYECIAENSRGKNVARGR 311

Query: 463 ------PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLI 516
                 P++++   DV     + ++ + +   C A G P PSY W K          N  
Sbjct: 312 LTYYAKPHWVQLIKDV-----EIAVEDSLYWECRASGKPKPSYRWLK----------NGA 356

Query: 517 DPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRA 576
             + ++R  +  G L I++   V D G + C A NK G + S +         +F+    
Sbjct: 357 ALVLEERTQIENGALTISN-LSVTDSGMFQCIAENKHGLVYSSAELKVVASAPDFSKNPM 415

Query: 577 PEIGNQNWGKAMFCD-PPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQID 635
            ++     G  +  D  P   P     W +      V+E +R+ +  DG L  + + + D
Sbjct: 416 KKLVQVQVGSLVSLDCKPRASPRALSSWKKGDVS--VQEHERISLLNDGGLKIANVTKAD 473

Query: 636 AGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECV 695
           AG Y+C  +++      NG    +   P    +    P+N   +       G+ V L C 
Sbjct: 474 AGTYTCMAENQFGKA--NGTTHLVVTEPT---RITLAPSNMDVSV------GESVILPCQ 522

Query: 696 AFGYPVPS--YNWTRRGSPLPRNAYFENFNRI-------LTIPNVKVEDQGEYICRASND 746
               P+    + W   G+         +F ++       L I N++++  G+Y+C     
Sbjct: 523 VQHDPLLDIIFTWYFNGALADFKKDGSHFEKVGGSSSGDLMIRNIQLKHSGKYVCMVQTG 582

Query: 747 RSALESSVTISIQAEP----NFTIPLTDKHMDNQADLTW 781
             ++ S+  + ++  P    N  +   D+  D  A L+W
Sbjct: 583 VDSVSSAADLIVRGSPGPPENVKV---DEITDTTAQLSW 618

Contactins mediate cell surface interactions during nervous system development. Has some neurite outgrowth-promoting activity.

Homo sapiens (taxid: 9606)

>sp|Q90W79|CNTN5_CHICK Contactin-5 OS=Gallus gallus GN=CNTN5 PE=1 SV=1

 Score =  206 bits (523), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 114/342 (33%), Positives = 172/342 (50%), Gaps = 16/342 (4%)

Query: 462 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 521
           GP F+++P DV+F          ++L+C A G P P+Y W +            ID  SD
Sbjct: 25  GPVFVQEPDDVIFPTDSEE--KKVSLNCQAHGSPTPTYRWLRN--------GTEIDVESD 74

Query: 522 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIG- 580
            R++L  G+LII++P +++D G Y C  +N FGSI+S    L F ++G F+ +    +  
Sbjct: 75  YRYSLIEGSLIISNPNEMKDSGQYQCLTTNMFGSILSREAVLQFAYLGNFSGRTRSAVSV 134

Query: 581 NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD-GALYFSALEQIDAGNY 639
            +  G  + C PP + P + Y W  + FP+FV ED R F+S + G LY S ++  D G+Y
Sbjct: 135 REGQGVVLMCSPPLHSPEIIYSWVFNEFPSFVAEDSRRFISQETGNLYISKVQTSDVGSY 194

Query: 640 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQL--KFPNNFPKTFPEAPKAGDKVRLECVAF 697
            C V++ V++     P  PL +       +   K   +FP T   A   G  V++EC A 
Sbjct: 195 ICLVKNTVTNARVLSPPTPLTLRNDGVMGEYEPKIEVHFPYTVTAA--RGTTVKMECFAL 252

Query: 698 GYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS 757
           G PVP+ +W +     P  A       +L IPNV++ED G Y C+A N R        + 
Sbjct: 253 GNPVPTISWKKVNGHNPSKARLRKSQAVLEIPNVQLEDAGMYECKAENSRGRNVFRGQLQ 312

Query: 758 IQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNG 799
           +   P +   L D  +D+   L W C+A G P  TY W +NG
Sbjct: 313 VYTYPQWVEKLNDTELDSGEQLRWECKATGKPRPTYRWLKNG 354

Contactins mediate cell surface interactions during nervous system development. May contribute to the formation of somatotopic maps of cerebellar afferents during the development of the nervous system.

Gallus gallus (taxid: 9031)

>sp|Q7ZW34|CNTN5_DANRE Contactin-5 OS=Danio rerio GN=cntn5 PE=2 SV=1

 Score =  205 bits (522), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 114/343 (33%), Positives = 169/343 (49%), Gaps = 16/343 (4%)

Query: 462 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 521
           GP FI++P D +F L        I ++C A G P P+Y W         +    +D  +D
Sbjct: 56  GPVFIQEPDDAIFSLDSDD--KKIIMNCEARGNPVPTYSWL--------INGTNVDTEAD 105

Query: 522 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK-RAPEIG 580
            R++L  GNLII++  +V D G Y C+A N  G ++S    L F ++G F+ K R     
Sbjct: 106 FRYSLIDGNLIIHNASEVIDYGRYQCRAENSIGIVLSRDALLQFAYLGPFSGKTRGAVSV 165

Query: 581 NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD-GALYFSALEQIDAGNY 639
            +  G  + C PP++ P + Y W  +  P+FV ED R F+S + G LY   ++  D G+Y
Sbjct: 166 REGQGVVLMCAPPSHSPEIIYSWVFNELPSFVAEDSRRFISQETGNLYIPKVQPSDVGSY 225

Query: 640 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQL--KFPNNFPKTFPEAPKAGDKVRLECVAF 697
            C V++ V++     P  PL +       +   K   +FP+T   A   G  VRLEC A 
Sbjct: 226 VCQVKNTVTNARVLSPPTPLTLKTDGVMGEYEPKIEAHFPQTVLAA--KGVTVRLECFAL 283

Query: 698 GYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS 757
           G PVP+  W +    +P+ A       +L IPN+++ED G Y C+A N R        + 
Sbjct: 284 GNPVPTITWRKMSGNIPKKARLRKSQAVLEIPNIQLEDSGSYECKAENTRGGTAFRGHLQ 343

Query: 758 IQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
           +   P +   + D  +D+   L W C A G P  TY W RNGE
Sbjct: 344 VYTLPQWISMINDTQLDSGEQLRWECRATGKPRPTYRWLRNGE 386

Contactins mediate cell surface interactions during nervous system development.

Danio rerio (taxid: 7955)

>sp|Q9JMB8|CNTN6_MOUSE Contactin-6 OS=Mus musculus GN=Cntn6 PE=2 SV=2

 Score =  203 bits (517), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 172/633 (27%), Positives = 271/633 (42%), Gaps = 81/633 (12%)

Query: 190 PYFIKQPTDVVF--DLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 247
           P FI++P DV+F  DLS+    ++I L+C A GYP+P Y W +            ID   
Sbjct: 26  PIFIQEPQDVIFPLDLSR----SEIILTCTANGYPSPHYRWKQN--------GTDIDFGM 73

Query: 248 DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIG 307
              + L GG+L I+ PR  +D G Y C A+N  G+I+S   +L F +I +F  K    + 
Sbjct: 74  TYHYRLDGGSLAISSPRTDQDIGIYQCLATNPVGTILSRKAKLQFAYIEDFETKTRSTVS 133

Query: 308 -NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD-GALYFSALEQIDAGN 365
             +  G  + C PP ++  ++Y W  +  P +V+EDKR FVS D G LYF+ +E  D GN
Sbjct: 134 VREGQGVVLLCGPPPHFGELSYAWTFNDSPLYVQEDKRRFVSQDTGNLYFAKVEPSDVGN 193

Query: 366 YSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQL--KFPNNFPKTFPEAPKAGDKVRLECVA 423
           Y+C V +K +     GP  PL +       +   K    FP+T   A  +   ++LEC A
Sbjct: 194 YTCFVTNKEAHRSVQGPPTPLVLRTDGVMGEYEPKIEVRFPETIQAAKDS--SIKLECFA 251

Query: 424 FGYPVPSYNWTRR-GSPLPRNAYFENFNRILTIPNVK-------------MRGPYFIKQP 469
            G PVP  +W R  GSP+P    +     IL IP  +             +RG    K  
Sbjct: 252 LGNPVPDISWKRLDGSPMPGKIKYSKSQAILEIPKFQQEDEGFYECIAGNLRGRNLAK-- 309

Query: 470 TDVVF----------DLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 519
             ++F            +  SI + +   C A G PNPSY W K      RL        
Sbjct: 310 GQLIFYAPPEWEQKIQNTYLSIYDSLFWECKASGNPNPSYTWLKNG---QRLN------- 359

Query: 520 SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEI 579
           +++R  +  G LII     + D G Y C A NK+ +I + +         +F+     +I
Sbjct: 360 TEERIQIENGTLIITM-LNISDSGIYQCAAENKYQTIYANAELRVLASAPDFSKNPIKKI 418

Query: 580 GNQNWGKAMFCD-PPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGN 638
                G  +  +  P  +P  +  W R      +++ KRV    DG+L    + + DAG+
Sbjct: 419 SVVQVGGDISIECKPNAFPKASISWKRGT--ENLKQSKRVLFLEDGSLKICNVTRADAGS 476

Query: 639 YSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFG 698
           Y+C   ++  +   +G      V        +  P+    T       G+ + L C    
Sbjct: 477 YTCVATNQFGNGKSSGGL----VVKERTIITVP-PSKMDVT------VGESIVLPCQVSH 525

Query: 699 YPVPS--YNWTRRGSPLPRNAYFENFNRI-------LTIPNVKVEDQGEYICRASNDRSA 749
            P     + W   G  +       +F RI       L I N+++   G+Y+C        
Sbjct: 526 DPTMEVLFVWYFNGDIIDLKKGVAHFERIGGESVGDLMIRNIQLGHSGKYLCTVQTTLER 585

Query: 750 LESSVTISIQAEPNFTIPLTDKHMDN-QADLTW 781
           L +   I ++  P     +  +H+ +  + L+W
Sbjct: 586 LSAVADIIVRGPPGPPEDVKVEHISSTTSQLSW 618

Contactins mediate cell surface interactions during nervous system development. Participates in oligodendrocytes generation by acting as a ligand of NOTCH1. Its association with NOTCH1 promotes NOTCH1 activation through the released notch intracellular domain (NICD) and subsequent translocation to the nucleus (By similarity). Involved in motor coordination.

Mus musculus (taxid: 10090)

>sp|Q62845|CNTN4_RAT Contactin-4 OS=Rattus norvegicus GN=Cntn4 PE=1 SV=1

 Score =  202 bits (514), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 174/645 (26%), Positives = 279/645 (43%), Gaps = 104/645 (16%)

Query: 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
           GP F+++P+ V+F L        + LSC   G P P   W        +L    +D   D
Sbjct: 25  GPVFVQEPSHVMFPLDSEE--KKVKLSCEVKGNPKPHIRW--------KLNGTDVDIGMD 74

Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIG- 307
            R+++  G+L+IN+P + +D G+Y C A+N FG+I+S   +L F ++  F  +    +  
Sbjct: 75  FRYSVVEGSLLINNPNKTQDSGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSV 134

Query: 308 NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD-GALYFSALEQIDAGNY 366
            +  G  + C PP +   ++Y W  +  P++  +D R FVS + G LY + +E+ D GNY
Sbjct: 135 RRGQGMVLLCGPPPHSGELSYAWIFNEHPSY--QDNRRFVSQETGNLYIAKVEKADVGNY 192

Query: 367 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQL--KFPNNFPKTFPEAPKAGDKVRLECVAF 424
           +C V + V+     GP  PL +       +   K    FP+T P   + G  V+LEC A 
Sbjct: 193 TCVVTNTVTSHQVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPA--EKGSTVKLECFAL 250

Query: 425 GYPVPSYNWTRR-GSPLPRNAYFENFNRILTIPNVKM-------------RGPYFIKQPT 470
           G PVP+  W R  G P+ R A     + IL IPN +              RG    K   
Sbjct: 251 GNPVPTILWRRADGKPIARKARRHKSSGILEIPNFQQEDAGSYECVAENSRGKNIAKGQV 310

Query: 471 DVVFDLSKRSILNDITLS--------CYAGGYPNPSYEWFKEDYVQDRLVANLIDP-LSD 521
                 +   I+NDI ++        C A G P P+Y W K             DP L+ 
Sbjct: 311 TFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNG-----------DPLLTR 359

Query: 522 KRFTLSGGNL---IINDPRQVEDRGSYHCKASNKFG--------SIISESVQLAFGFIGE 570
           +R  +  G L   I+N    + D G Y C A NK G        S+I+ES   +   +  
Sbjct: 360 ERIQIEQGTLNITIVN----LSDAGMYQCVAENKHGVIYASAELSVIAESPDFSRTLLKR 415

Query: 571 FNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSA 630
             L +   +G    G+ +    P   P   Y W +      + E++R+ +S DG L    
Sbjct: 416 VTLVK---VG----GEVVIECKPKASPRPVYTWRKGR--EILRENERITISEDGNLRIIN 466

Query: 631 LEQIDAGNYSC---NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAG 687
           + + DAG+Y+C   N     S TG      P KV        +  P++   T       G
Sbjct: 467 VTKSDAGSYTCIATNHFGTASSTGNVVVKDPTKV--------MVPPSSMDVTV------G 512

Query: 688 DKVRLEC-VAFGYPVP-SYNWTRRGSPLPRNAYFENFNRI--------LTIPNVKVEDQG 737
           + + L C V   + +   + WT  G  +  +   ++F R+        L I N++++  G
Sbjct: 513 ESIVLPCQVTHDHSLDIVFTWTFNGHLIDFDKDGDHFERVGGQDSAGDLMIRNIQLKHAG 572

Query: 738 EYICRASNDRSALESSVTISIQAEPNFTIPLT-DKHMDNQADLTW 781
           +Y+C        L ++  + ++  P     +T D+  D  A L+W
Sbjct: 573 KYVCMVQTSVDKLSAAADLIVRGPPGPPEAVTIDEITDTTAQLSW 617

Contactins mediate cell surface interactions during nervous system development. Has some neurite outgrowth-promoting activity. May be involved in synaptogenesis.

Rattus norvegicus (taxid: 10116)

>sp|Q69Z26|CNTN4_MOUSE Contactin-4 OS=Mus musculus GN=Cntn4 PE=2 SV=2

 Score =  202 bits (514), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 174/640 (27%), Positives = 278/640 (43%), Gaps = 94/640 (14%)

Query: 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
           GP F+++P+ V+F L        + LSC   G P P   W        ++    +D   D
Sbjct: 25  GPVFVQEPSHVMFPLDSEE--KKVKLSCEVKGNPKPHIRW--------KINGTDVDIGMD 74

Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIG- 307
            R+++  G+L+IN+P + +D G+Y C A+N FG+I+S   +L F ++  F  +    +  
Sbjct: 75  FRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSV 134

Query: 308 NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD-GALYFSALEQIDAGNY 366
            +  G  + C PP +   ++Y W  + +P++  +D R FVS + G LY + +E+ D GNY
Sbjct: 135 RRGQGMVLLCGPPPHSGELSYAWIFNEYPSY--QDNRRFVSQETGNLYIAKVEKSDVGNY 192

Query: 367 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQL--KFPNNFPKTFPEAPKAGDKVRLECVAF 424
           +C V + V++    GP  PL +       +   K    FP+T P   + G  V+LEC A 
Sbjct: 193 TCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPA--EKGTTVKLECFAL 250

Query: 425 GYPVPSYNWTRR-GSPLPRNAYFENFNRILTIPNVKM-------------RGPYFIKQPT 470
           G PVP+  W R  G P+ R A     N IL IPN +              RG    K   
Sbjct: 251 GNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQL 310

Query: 471 DVVFDLSKRSILNDITLS--------CYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
                 +   I+NDI ++        C A G P P+Y W K             DPL  +
Sbjct: 311 TFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNG-----------DPLLTR 359

Query: 523 -RFTLSGGNL---IINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFN---LKR 575
            R  +  G L   I+N    + D G Y C A NK G I S +         +F+   LKR
Sbjct: 360 DRIQIEQGTLNITIVN----LSDAGMYQCVAENKHGVIFSSAELSVIAESPDFSRTLLKR 415

Query: 576 APEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQID 635
              +  +  G+ +    P   P   Y W +      + E++R+ +S DG L    + + D
Sbjct: 416 VTLV--KVGGEVVIECKPKASPRPVYTWRKGR--EILRENERITISEDGNLRIINVTKSD 471

Query: 636 AGNYSC---NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRL 692
           AG+Y+C   N     S TG      P KV        +  P++   T       G+ + L
Sbjct: 472 AGSYTCIATNHFGTASSTGNVIVKDPTKV--------MVPPSSMDVTV------GESIVL 517

Query: 693 EC-VAFGYPVP-SYNWTRRGSPLPRNAYFENFNRI--------LTIPNVKVEDQGEYICR 742
            C V   + +   + WT  G  +  +   ++F R+        L I N++++  G+Y+C 
Sbjct: 518 PCQVTHDHSLDIVFTWTFNGHLIDFDKDGDHFERVGGQDSAGDLMIRNIQLKHAGKYVCM 577

Query: 743 ASNDRSALESSVTISIQAEPNFTIPLT-DKHMDNQADLTW 781
                  L  +  + ++  P     +T D+  D  A L+W
Sbjct: 578 VQTSVDKLSVAADLIVRGPPGPPEAVTIDEITDTTAQLSW 617

Contactins mediate cell surface interactions during nervous system development. Has some neurite outgrowth-promoting activity. May be involved in synaptogenesis.

Mus musculus (taxid: 10090)

>sp|P97528|CNTN6_RAT Contactin-6 OS=Rattus norvegicus GN=Cntn6 PE=1 SV=1

 Score =  201 bits (512), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 172/637 (27%), Positives = 269/637 (42%), Gaps = 89/637 (13%)

Query: 190 PYFIKQPTDVVF--DLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 247
           P FI++P DV+F  DLS+    ++I LSC A GYP+P Y W +            ID   
Sbjct: 26  PIFIQEPQDVIFPLDLSR----SEIILSCTASGYPSPHYRWKQN--------GTDIDFSM 73

Query: 248 DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIG 307
              + L GG+L I+ PR  +D G Y C A+N  G+I+S   +L F +I +F  K    + 
Sbjct: 74  TYHYRLDGGSLAISSPRTDQDIGIYQCLATNPVGTILSRKAKLQFAYIEDFETKSRSTVS 133

Query: 308 -NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD-GALYFSALEQIDAGN 365
             +  G  + C PP ++  ++Y W  +  P +V+EDKR FVS + G LY + +E  D GN
Sbjct: 134 VREGQGVVLLCGPPPHFGELSYDWTFNDNPLYVQEDKRRFVSQNTGNLYIAKVEPSDVGN 193

Query: 366 YSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAG--DKVRLECVA 423
           Y+C V +K +     GP  PL     ++    ++       FPE  +A     V+LEC A
Sbjct: 194 YTCFVTNKEAHRSVQGPPTPL--VQRTDGVMGEYEPKIEVRFPETIQAAKDSSVKLECFA 251

Query: 424 FGYPVPSYNWTRR-GSPLPRNAYFENFNRILTIPNVK-------------MRGPYFIKQP 469
            G PVP  +W R  GSP+P    + N    L IP  +             +RG    K  
Sbjct: 252 LGNPVPDISWRRLDGSPMPGKVKYSNSQATLEIPKFQQEDEGFYECVAGNLRGRNLAK-- 309

Query: 470 TDVVF----------DLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 519
             ++F            +  SI + +   C A G PNPSY W K     +RL        
Sbjct: 310 GQLIFYAPPEWEQKIQNTYLSIYDSLFWECKASGNPNPSYTWLKNG---ERLN------- 359

Query: 520 SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEI 579
           +++R     G LII     V D G Y C A NK+ +I + +         +F+     +I
Sbjct: 360 TEERIQTENGTLIITM-LNVSDSGIYQCAAENKYQTIYANAELRVLASAPDFSKNPIKKI 418

Query: 580 GNQNWGKAMFCD-PPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGN 638
                G  +  +  P  +P  +  W R      +++ KRVF   DG+L    + + DAG+
Sbjct: 419 SVVQVGGDISIECKPNAFPKASISWKRGT--ENLKQSKRVFFLEDGSLKICNVTRSDAGS 476

Query: 639 YSCNVQSKVSDTGRNGPFF----PLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC 694
           Y+C   ++  +   +G        +   P S                     G+ + L C
Sbjct: 477 YTCVATNQFGNGKSSGSLIVKERTVITVPPSKMDV---------------TVGESIVLPC 521

Query: 695 VAFGYPVPS--YNWTRRGSPLPRNAYFENFNRI-------LTIPNVKVEDQGEYICRASN 745
                P     + W   G  +       +F RI       L I N+++   G+Y+C    
Sbjct: 522 QVSHDPTMEVLFVWYFNGDVIDLKKGVAHFERIGGESVGDLMIRNIQLGHSGKYLCTVQT 581

Query: 746 DRSALESSVTISIQAEPNFTIPLTDKHMDN-QADLTW 781
               L +   I ++  P     +  +H+ +  + L+W
Sbjct: 582 TLERLSAVADIIVRGPPGPPEDVKVEHISSTTSQLSW 618

Contactins mediate cell surface interactions during nervous system development. Participates in oligodendrocytes generation by acting as a ligand of NOTCH1. Its association with NOTCH1 promotes NOTCH1 activation through the released notch intracellular domain (NICD) and subsequent translocation to the nucleus. May be involved in motor coordination.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	813
328787872	1641	PREDICTED: contactin-like [Apis mellifer	0.949	0.470	0.465	0.0
380021534	1641	PREDICTED: contactin-like [Apis florea]	0.948	0.469	0.465	0.0
383850888	1650	PREDICTED: contactin-like [Megachile rot	0.940	0.463	0.451	0.0
340724306	1642	PREDICTED: contactin-like [Bombus terres	0.963	0.476	0.451	0.0
350420740	1813	PREDICTED: contactin-like [Bombus impati	0.964	0.432	0.448	0.0
332023779	1220	Contactin [Acromyrmex echinatior]	0.942	0.627	0.451	0.0
242009529	1266	Contactin precursor, putative [Pediculus	0.884	0.567	0.448	0.0
307210402	1647	Contactin [Harpegnathos saltator]	0.937	0.462	0.435	0.0
183979292	1326	contactin [Papilio xuthus]	0.881	0.540	0.413	1e-160
270015155	1180	hypothetical protein TcasGA2_TC013632 [T	0.821	0.566	0.416	1e-158

>gi|328787872|ref|XP_003251020.1| PREDICTED: contactin-like [Apis mellifera]

 Score =  714 bits (1843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/820 (46%), Positives = 498/820 (60%), Gaps = 48/820 (5%)

Query: 8   LFIFVSFHSVFSQTI--DELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDL 65
           ++I++  ++ F+Q I  +EL   CPQHW+++++SCYRF+KSP+K R DAK NC++  SDL
Sbjct: 9   IYIYILSYNTFAQNILYEELYQHCPQHWIKFQESCYRFIKSPIKERQDAKRNCEAYQSDL 68

Query: 66  ANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNE-DGTNLNELDAAFLPEPAD 124
             +N  +EHGFI+YQL WQDPQ RKWY G   Q+ N W+NE D T L  +D AFLPEP D
Sbjct: 69  ITINSLEEHGFILYQLLWQDPQHRKWYTGVKYQNGN-WINEGDNTQLINMDNAFLPEPPD 127

Query: 125 NVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEASIQKLHYLLNDDRTYQYGMDIENPD 184
           +  +DYL YS++ +L+RWG E+VTG E LL+ICEA I  L+ L++DDRTYQYG++I+NP+
Sbjct: 128 SFDKDYLIYSYNNNLQRWGLEKVTGKEKLLYICEAPISNLYNLIDDDRTYQYGIEIDNPN 187

Query: 185 KIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLID 244
           +IPRGPYFIKQPTD VFD+S R I ND++LSC AGGYP P+YEWFKEDY  D+L+A  ID
Sbjct: 188 EIPRGPYFIKQPTDKVFDMSTRKISNDVSLSCLAGGYPTPTYEWFKEDYENDKLIATKID 247

Query: 245 PLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAP 304
           PL++ R+T+SGG LII +P Q EDRGSYHCKA+NKFG+IISESV+L+FG+I EFNLKR+ 
Sbjct: 248 PLNNIRYTVSGGTLIIYEPDQTEDRGSYHCKATNKFGTIISESVELSFGYILEFNLKRSE 307

Query: 305 EIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAG 364
           E G+QNWGKA++CDPP +YPGV YYWARDYFPNFVEEDKRVFVS DGALYFSALE ID G
Sbjct: 308 ERGDQNWGKAVYCDPPQHYPGVKYYWARDYFPNFVEEDKRVFVSNDGALYFSALEMIDRG 367

Query: 365 NYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF 424
           NYSCNVQS  SDTGRNGPFFPL+V PHS+FQQLKFPNNFPK FPEAP A ++VRLEC+AF
Sbjct: 368 NYSCNVQSVASDTGRNGPFFPLRVDPHSSFQQLKFPNNFPKAFPEAPIAEEEVRLECIAF 427

Query: 425 GYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKM--RGPYF----------------- 465
           GYPVPSYNWTRRG+PLPR AY  ++NR+L IP + +  +G Y                  
Sbjct: 428 GYPVPSYNWTRRGAPLPRGAYTTSYNRVLIIPKIHVDDQGEYICRVYNDRLSIENSVTLT 487

Query: 466 IKQPTDVVFDLSKRSILN--DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKR 523
           I+   +    L  + + N  ++T +C A G P+ +Y WF+   +   L    +      R
Sbjct: 488 IQAAPNFTIPLVDKHMDNRGELTWTCEAFGIPDVTYSWFRNGEI---LNMETLSSEDKDR 544

Query: 524 FTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKR--APEIGN 581
           +++    L I +     D+  Y C+A N+  +  S S QL    +     KR   PE   
Sbjct: 545 YSIQDNVLSIKNLDPERDQAMYQCRAKNQLKTRYS-SAQLRILSLKPSFKKRPMEPETYA 603

Query: 582 QNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC 641
              G       P   P   + W +D   N +    R  +   G L  S + + D G Y C
Sbjct: 604 AEKGNITIICNPEAAPRPKFVWKKD--GNVIGSGGRRRILETGNLIISPVSRDDEGTYIC 661

Query: 642 NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRL-----ECVA 696
              ++  +    G    L+          +F    P+    A      +R      E + 
Sbjct: 662 TATNQYGNDETRGRLIVLR--------GPQFMEKLPQQITTAVMQNQTLRCIGEIDEMLD 713

Query: 697 FGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI 756
             Y         R   L  N         L I N    + GEY C   +  S + S   +
Sbjct: 714 VAYIWKHNGLRIRDEDLINNPRLNINGEELNIINATFAEAGEYECIIKSAVSEISSKTIV 773

Query: 757 SIQAEPNFTIPLTDKHM-DNQADLTWTCEAF-GVPDVTYS 794
           +I+  P     +  K++      L WT  AF G P   YS
Sbjct: 774 TIEGPPGPPGGVQVKNIVKTSTTLRWTDGAFNGKPITMYS 813

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380021534|ref|XP_003694618.1| PREDICTED: contactin-like [Apis florea]

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/821 (46%), Positives = 501/821 (61%), Gaps = 50/821 (6%)

Query: 8   LFIFVSFHSVFSQTI--DELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDL 65
           ++I +  ++ F+Q I  +EL   CPQHW+++++SCYRF+KSP+K R DAK NC++  SDL
Sbjct: 9   IYIHILSYNTFAQNILYEELYQHCPQHWIKFQESCYRFIKSPIKERQDAKRNCEAYQSDL 68

Query: 66  ANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNE-DGTNLNELDAAFLPEPAD 124
             +N  +EHGFI+YQL WQDPQ RKWY G   Q+ N W+NE D T L  +D AFLPEP D
Sbjct: 69  VTINSLEEHGFILYQLLWQDPQHRKWYTGVKYQNGN-WINEGDNTQLVNMDNAFLPEPLD 127

Query: 125 NVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEASIQKLHYLLNDDRTYQYGMDIENPD 184
              +DYL YS++ +L+RWG E+VTG E LL+ICEA+I  L+ L++DDRTYQYG++I+NP+
Sbjct: 128 TFDKDYLIYSYNNNLQRWGLEKVTGKEKLLYICEATISNLYNLIDDDRTYQYGIEIDNPN 187

Query: 185 KIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLID 244
           +IPRGPYFIKQPTD VFD+S R I ND++LSC AGGYP P+YEWFKEDY  D+L+A  ID
Sbjct: 188 EIPRGPYFIKQPTDKVFDMSTRKISNDVSLSCLAGGYPTPTYEWFKEDYENDKLIATKID 247

Query: 245 PLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAP 304
           PL++ R+T+SGG LII +P Q EDRGSYHCKA+NKFG+I+SESV+L+FG+I EFNLKR+ 
Sbjct: 248 PLNNVRYTVSGGTLIIYEPDQTEDRGSYHCKATNKFGTIVSESVELSFGYILEFNLKRSE 307

Query: 305 EIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAG 364
           E G+QNWGKA++CDPP +YPGV YYWARDYFPNFVEEDKRVFVS DGALYFSALE ID G
Sbjct: 308 ERGDQNWGKAVYCDPPQHYPGVKYYWARDYFPNFVEEDKRVFVSNDGALYFSALEMIDRG 367

Query: 365 NYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF 424
           NYSCNVQS  SDTGRNGPFFPL+V PHS+FQQLKFPNNFPK FPEAP A ++VRLEC+AF
Sbjct: 368 NYSCNVQSVASDTGRNGPFFPLRVDPHSSFQQLKFPNNFPKAFPEAPIAEEEVRLECIAF 427

Query: 425 GYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKM--RGPYF----------------- 465
           GYPVPSYNWTRRG+PLPR AY  ++NR+L IP + +  +G Y                  
Sbjct: 428 GYPVPSYNWTRRGAPLPRGAYTTSYNRVLIIPKIHVDDQGEYICRVYNDRLSIENGVTLT 487

Query: 466 IKQPTDVVFDLSKRSILN--DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKR 523
           I+   +    L  + + N  ++T +C A G P+ +Y WF+   +   L    +      R
Sbjct: 488 IQAAPNFTIPLVDKHMDNRGELTWTCEAFGIPDVTYSWFRNGEI---LNMETLSSEDKGR 544

Query: 524 FTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKR--APEIGN 581
           +++    L I +     D+  Y C+A N+  +  S S QL    +     KR   PE   
Sbjct: 545 YSIQDNVLSIKNLDPERDQAMYQCRARNQLKTRYS-SAQLRILSLKPSFKKRPMEPETYA 603

Query: 582 QNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC 641
              G       P   P   + W +D   N +    R  +   G L  S + + D G Y C
Sbjct: 604 AEKGNITIICNPEAAPRPKFVWKKD--GNVIGSGGRRRILETGNLIISPVSRDDEGTYIC 661

Query: 642 NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPV 701
              ++  +    G    L+          +F    P+    A      +R          
Sbjct: 662 TATNQYGNDETRGRLIVLR--------GPQFMEKLPQQITTAVMQNQTLRCTGEIDEMLD 713

Query: 702 PSYNWTRRGSPLPRNAYFENFNRI------LTIPNVKVEDQGEYICRASNDRSALESSVT 755
            +Y W   G  + R+    N  R+      L I N    + GEY C   +  S + S   
Sbjct: 714 VAYIWKHNGLRI-RDEDLINNPRLNINGEELNIINATFAEAGEYECIIKSAVSEISSKTV 772

Query: 756 ISIQAEPNFTIPLTDKHM-DNQADLTWTCEAF-GVPDVTYS 794
           ++I+  P     +  K++      L WT  AF G P   YS
Sbjct: 773 VTIEGPPGPPGGVQVKNIVKTSTTLRWTDGAFNGKPITMYS 813

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383850888|ref|XP_003701006.1| PREDICTED: contactin-like [Megachile rotundata]

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/828 (45%), Positives = 489/828 (59%), Gaps = 63/828 (7%)

Query: 8   LFIFVSFHSVFSQTI--DELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDL 65
           ++  V+   V++Q     E   +CP HW+++++SCYRF+KSP++ R DA+ NC++  SDL
Sbjct: 9   IYTLVALTGVYTQNFLYGEEYNQCPLHWIKFQESCYRFIKSPVRERQDARKNCQAYQSDL 68

Query: 66  ANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNE-DGTNLNELDAAFLPEPAD 124
             +N  +EHGFIMYQL WQDPQ  KWY G   Q+ N WVNE D T L  +D AFLPEP D
Sbjct: 69  LTINSLEEHGFIMYQLLWQDPQHHKWYTGIKNQNGN-WVNEADNTQLTNMDNAFLPEPND 127

Query: 125 -NVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEASIQKLHYLLNDDRTYQYGMDIENP 183
            +  RDY+ YS++ +L+RWG E VTG E LL+ICEA +  LH L+ DDRTY YG++IENP
Sbjct: 128 RDYNRDYVVYSYNNNLRRWGLETVTGSEKLLYICEAPMSNLHNLIEDDRTYHYGVEIENP 187

Query: 184 DKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLI 243
           ++IPRGPYFIKQP D VFD+SKR I NDI+LSC AGGYP P+YEWFKEDY  DRL+A  I
Sbjct: 188 NEIPRGPYFIKQPVDKVFDVSKRKINNDISLSCLAGGYPAPTYEWFKEDYENDRLIATKI 247

Query: 244 DPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRA 303
           +PL + R+T+SGG LII +P Q EDRG+YHCKA+NKFG+IISESV+L+FG+I EFNLKR+
Sbjct: 248 NPLDNARYTVSGGTLIIYEPDQTEDRGAYHCKATNKFGTIISESVELSFGYILEFNLKRS 307

Query: 304 PEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDA 363
            E G+Q WGKA++CDPP ++PGV YYWARDYFPNFVEEDKRVFVS+DGALYFS LE ID 
Sbjct: 308 EERGDQKWGKAVYCDPPQHFPGVKYYWARDYFPNFVEEDKRVFVSHDGALYFSVLEMIDR 367

Query: 364 GNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVA 423
           GNYSCNVQS  SDTGRNGPFFPL+V PHS+FQQLKFPNNFPK FP+AP AG++VRLEC+A
Sbjct: 368 GNYSCNVQSVASDTGRNGPFFPLRVDPHSSFQQLKFPNNFPKAFPQAPIAGEEVRLECIA 427

Query: 424 FGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKM--RGPYFIKQPTDVVFDLSKRSI 481
           FGYPVPS+NWTRRG  LPR +Y  ++NR+L IP V +  +G Y  +   D      + SI
Sbjct: 428 FGYPVPSFNWTRRGGSLPRGSYTTSYNRVLIIPKVHVDDQGEYICRAHND------RLSI 481

Query: 482 LNDITL-------------------------SCYAGGYPNPSYEWFKEDYVQDRLVANLI 516
            N +TL                         +C A G P+ +Y WF+   + +  V  L 
Sbjct: 482 ENSVTLTIQAAPNFTIPLVDKHMDNRGELTWTCEAFGIPDVTYSWFRNGELLN--VDTL- 538

Query: 517 DPLSDK-RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK- 574
            P+ D+ R+ +    L I +     D+  Y C+A N+  +  S +          F  + 
Sbjct: 539 -PIEDRERYFIQDNVLTIKNLDPERDQAMYQCRARNQLKTKYSSAQLRVLSLKPSFKKRP 597

Query: 575 RAPEIGNQNWGKA-MFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQ 633
             PE      G   +FC+P    P   + W +D   N +    R  +   G L  S +  
Sbjct: 598 MEPETYAAERGNVTIFCNPEAA-PKPKFVWKKD--GNIIGSGGRRRILEGGNLIISPVSS 654

Query: 634 IDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRL- 692
            D G Y C+  ++       G    L+  P+       F    P+    A      +R  
Sbjct: 655 DDEGTYVCSATNQYGSDETRGRLIVLR-RPY-------FLEKLPQRITTAVMQNQTLRCI 706

Query: 693 ----ECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRS 748
               E +   Y         R   L  N         L I N    + G+Y C   +   
Sbjct: 707 GEVDEMLDVAYIWKHNGLRIRDEDLASNPRLRIDGGELNIINATFAEAGDYECIIKSAVG 766

Query: 749 ALESSVTISIQAEPNFTIPLTDKHM-DNQADLTWTCEAF-GVPDVTYS 794
            + S+ T+ I+  P     +   ++      L WT  AF G P   Y+
Sbjct: 767 EISSTTTVMIEGPPGPPGGVQVVNIVKTSTTLRWTDGAFNGRPITMYT 814

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340724306|ref|XP_003400523.1| PREDICTED: contactin-like [Bombus terrestris]

 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/852 (45%), Positives = 506/852 (59%), Gaps = 69/852 (8%)

Query: 1   MSLISSCLFIFVSFHSVFSQTIDELEL-RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCK 59
           +S I + + I  S+   F+Q +   E  +CPQHW+++++SCYRF+KSP++ R +AK NC+
Sbjct: 4   VSEIITYILIVTSY--TFAQNVLYGEQNQCPQHWIKFQESCYRFIKSPIRDRQEAKKNCE 61

Query: 60  SLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNE-DGTNLNELDAAF 118
           +  SDL  +N  +EHGFI+Y L WQDPQ RKWY G   Q+ N W+NE D T L  ++ AF
Sbjct: 62  AYRSDLITINSLEEHGFILYHLLWQDPQHRKWYTGIKYQNGN-WINEADNTQLLNMENAF 120

Query: 119 LPEPADN-VQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEASIQKLHYLLNDDRTYQYG 177
           LPEP DN +  DYL YS+  +L+RWG E+VTG +  L+ICEA I  L+ L++DDRTYQYG
Sbjct: 121 LPEPVDNTLGEDYLVYSYHNNLQRWGLEKVTGRDRFLYICEAPISNLYNLVDDDRTYQYG 180

Query: 178 MDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDR 237
           ++I+NP +IPRGPYFIKQPTD VFDLSKR I ND+ LSC AGGYP P+YEWFKEDY  DR
Sbjct: 181 IEIDNPREIPRGPYFIKQPTDKVFDLSKRKINNDVALSCLAGGYPAPTYEWFKEDYENDR 240

Query: 238 LVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGE 297
           L+A  IDPL++ R+T+SGG LII +P Q EDRGSYHCKA+NKFG+IISESV+L+FG+I E
Sbjct: 241 LIATKIDPLNNNRYTVSGGTLIIYEPDQAEDRGSYHCKATNKFGTIISESVELSFGYILE 300

Query: 298 FNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSA 357
           FNLKR+ E G QNWGK ++CDPP ++PGV YYWARDYFPNFVEEDKRVFVS+DGALYFSA
Sbjct: 301 FNLKRSEERGEQNWGKVVYCDPPQHFPGVKYYWARDYFPNFVEEDKRVFVSHDGALYFSA 360

Query: 358 LEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKV 417
           LE ID GNYSCNVQS  SDTGRNGPFFPL+V PHS+FQQLKF +NFPK FP+AP AG +V
Sbjct: 361 LEMIDRGNYSCNVQSVASDTGRNGPFFPLRVDPHSSFQQLKFSDNFPKAFPDAPIAGVEV 420

Query: 418 RLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKM--RGPY----------- 464
           RLECVAFGYP+PSYNWTRRG+ LPR +Y  ++NR+L IP V +  +G Y           
Sbjct: 421 RLECVAFGYPIPSYNWTRRGASLPRGSYTTSYNRVLIIPKVHVDDQGEYTCRVYNDRSAI 480

Query: 465 ------FIKQPTDVVFDLSKRSILN--DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLI 516
                  I+   +    L  + + N  ++T +C A G P+ SY WF+   + +       
Sbjct: 481 ENSVRLTIQAAPNFTIPLVDKHMDNRGELTWTCEAFGIPDVSYSWFRNGEILNMETL--- 537

Query: 517 DPLSDK-RFTLSGGNLIIN--DPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNL 573
            P  D+ R+++    L I   DP +  D+  Y C+A N+  +  S S QL    +     
Sbjct: 538 -PSQDRDRYSIQDNVLSIKYLDPER--DQAMYQCRARNQLKTKYS-SAQLRILSLKPSFK 593

Query: 574 KR-------APEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGAL 626
           KR       A E GN      +FC+P    P   + W +D   N +    R  +   G L
Sbjct: 594 KRPMEPETYAAEKGN----VTIFCNPEAA-PRPKFVWKKD--GNVIGSGGRRKILETGNL 646

Query: 627 YFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA 686
             S + + D G Y C   ++       G    L+          +F    P+    A   
Sbjct: 647 IISPVSRDDEGTYICTATNQYGSDDTRGRLIVLR--------GPQFIEKLPQHVTSAVMQ 698

Query: 687 GDKVRL--ECVAFGYPVPSYNWTRRG-----SPLPRNAYFENFNRILTIPNVKVEDQGEY 739
              +R   E V     V +Y W   G       L  N         L I N    + GEY
Sbjct: 699 NQTLRCMGEVVDEMLDV-AYIWKHNGLRIRDEDLINNPRLHIDGEELNIINATFAEAGEY 757

Query: 740 ICRASNDRSALESSVTISIQAEPNFTIPLTDKHM-DNQADLTWTCEAF-GVPDVTYSWFR 797
            C   +    + S  T++I+  P     +   ++      L WT  AF G P   Y+   
Sbjct: 758 QCIIKSAVGEISSKTTVTIEGPPGPPGGVQVVNIVKTSTTLRWTDGAFNGKPITMYTVSA 817

Query: 798 NGELGHQMTDLL 809
                H  ++++
Sbjct: 818 RTNWNHTWSNII 829

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350420740|ref|XP_003492608.1| PREDICTED: contactin-like [Bombus impatiens]

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/851 (44%), Positives = 501/851 (58%), Gaps = 67/851 (7%)

Query: 1   MSLISSCLFIFVSFHSVFSQTIDELE-LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCK 59
           +S I + + I  S+   F+Q +   E  +CPQHW+++++SCYRF+KSP++ R +AK NC+
Sbjct: 4   VSEIITYILIVTSY--TFAQNVLYGEQYQCPQHWIKFQESCYRFIKSPIRDRQEAKKNCE 61

Query: 60  SLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNE-DGTNLNELDAAF 118
           +  SDL  +N  +EHGFI+Y L WQDPQ  KWY G   Q+ N W+NE D T L  ++ AF
Sbjct: 62  AYQSDLTTINSLEEHGFILYHLLWQDPQHHKWYTGIKYQNGN-WINEADNTQLLNMENAF 120

Query: 119 LPEPADN-VQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEASIQKLHYLLNDDRTYQYG 177
           LPEP DN +  DYL YS+  +L+RWG E+V G +  L+ICEA I  LH L++DDRTYQYG
Sbjct: 121 LPEPVDNTLGGDYLVYSYHNNLQRWGLEKVNGRDRFLYICEAPISNLHNLVDDDRTYQYG 180

Query: 178 MDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDR 237
           ++I+NP +IPRGPYFIKQPTD VFDLSKR I ND+ LSC AGGYP P+YEWFKEDY  DR
Sbjct: 181 IEIDNPREIPRGPYFIKQPTDKVFDLSKRKINNDVALSCLAGGYPAPTYEWFKEDYENDR 240

Query: 238 LVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGE 297
           L+A  IDPL++ R+T+SGG LII +P Q EDRGSYHCKA+NKFG+IISESV+L+FG+I E
Sbjct: 241 LIATKIDPLNNNRYTISGGTLIIYEPDQTEDRGSYHCKATNKFGTIISESVELSFGYILE 300

Query: 298 FNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSA 357
           FNLKR+ E G QNWGK ++CDPP ++PGV YYWARDYFPNFVEEDKRVFVS+DGALYFSA
Sbjct: 301 FNLKRSEERGEQNWGKVVYCDPPQHFPGVKYYWARDYFPNFVEEDKRVFVSHDGALYFSA 360

Query: 358 LEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKV 417
           LE ID GNYSCNVQS  SDTGRNGPFFPL+V  HS+FQQLKF  NFPK FP+AP AG++V
Sbjct: 361 LEMIDRGNYSCNVQSVASDTGRNGPFFPLRVDSHSSFQQLKFSGNFPKAFPDAPIAGEEV 420

Query: 418 RLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKM--RGPY----------- 464
           RLECVAFGYP+PSYNWTRRG+ LPR +Y  ++NR+L IP V +  +G Y           
Sbjct: 421 RLECVAFGYPIPSYNWTRRGASLPRGSYTTSYNRVLIIPKVHVDDQGEYTCRVYNDRSAI 480

Query: 465 ------FIKQPTDVVFDLSKRSILN--DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLI 516
                  I+   +    L  + + N  ++T +C A G P+ SY WF+     + L    +
Sbjct: 481 ENSVRLTIQAAPNFTIPLVDKHMDNRGELTWTCEAFGIPDVSYSWFRNG---EMLNMETL 537

Query: 517 DPLSDKRFTLSGGNLIIN--DPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK 574
                 R+++    L I   DP +  D+  Y C+A N+  +  S S QL    +     K
Sbjct: 538 PSQDRDRYSIQDNVLSIKYLDPER--DQAMYQCRARNQLKTKYS-SAQLRILSLKPSFKK 594

Query: 575 R-------APEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALY 627
           R       A E GN      +FC+P    P   + W +D   N +    R  +   G L 
Sbjct: 595 RPMEPETYAAEKGN----VTIFCNPEAA-PRPKFVWKKD--GNVIGSGGRRRILETGNLI 647

Query: 628 FSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAG 687
            S + + D G Y C   ++       G    L+          +F    P+    A    
Sbjct: 648 ISPVSRDDEGTYICTATNQYGSDDTRGRLIVLR--------GPQFIEKLPQHVTSAVMQN 699

Query: 688 DKVRL--ECVAFGYPVPSYNWTRRG-----SPLPRNAYFENFNRILTIPNVKVEDQGEYI 740
             +R   E V     V +Y W   G       L  N         L I N    + GEY 
Sbjct: 700 QTLRCMGEVVDEMLDV-AYIWKHNGLRIRDEDLINNPRLHIDGEELNIINATFAEAGEYQ 758

Query: 741 CRASNDRSALESSVTISIQAEPNFTIPLTDKHM-DNQADLTWTCEAF-GVPDVTYSWFRN 798
           C   +    + S  T++I+  P     +   ++      L WT  AF G P   Y+    
Sbjct: 759 CIIKSAVGEISSKTTVTIEGPPGPPGGVQVVNIVKTSTTLRWTDGAFNGKPITMYTVSAR 818

Query: 799 GELGHQMTDLL 809
               H  ++++
Sbjct: 819 TNWNHTWSNII 829

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023779|gb|EGI64003.1| Contactin [Acromyrmex echinatior]

 Score =  669 bits (1727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/831 (45%), Positives = 495/831 (59%), Gaps = 65/831 (7%)

Query: 3   LISSCLFIFVSFHSVFSQTIDELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD 62
           LI++   + +S  +     +   E +CPQHW+Q+++SCYRFVKSPL+ R DA+ NC++  
Sbjct: 5   LITAVFSLILSLPAFAQNILYGEEYKCPQHWIQFQESCYRFVKSPLRPREDARRNCQAFQ 64

Query: 63  SDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNE-DGTNLNELDAAFLPE 121
           SDL  +N  +EHGF++YQL WQDPQ R+WY G   Q+  LW+NE D T L  +D AFLPE
Sbjct: 65  SDLLTINTMEEHGFVLYQLLWQDPQHRRWYTGIKLQN-GLWINEADSTTLINMDNAFLPE 123

Query: 122 PADNV-QRDYLAYSFSQSLKRWGFERVTGMEPLLFICEASIQKLHYLLNDDRTYQYGMDI 180
             DN+  RDYLAYS+S SL+RWG E+VTG E LL+ICEA I  LH L+ +DRTYQYG++I
Sbjct: 124 --DNILGRDYLAYSYSNSLQRWGLEKVTGREELLYICEAPIATLHNLVEEDRTYQYGINI 181

Query: 181 ENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVA 240
           +NP +IPRGPYFIKQP + VFD SKR++ ND++LSC AGGYP P+YEWF+E YV D LVA
Sbjct: 182 DNPLQIPRGPYFIKQPINKVFDQSKRNVRNDVSLSCLAGGYPTPTYEWFRETYVNDLLVA 241

Query: 241 NLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNL 300
             IDPL D++FT+SGG LII DP    D G YHCKA+NKFG+IISES +L+FGFI EFNL
Sbjct: 242 IKIDPLVDRKFTVSGGTLIIYDPNSKIDSGLYHCKATNKFGTIISESAELSFGFINEFNL 301

Query: 301 KRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQ 360
           KR+ E G+ +WGK M+CDPP ++P V+YYW R+YFPNFVEEDKRVFVS+DGALYFSALE 
Sbjct: 302 KRSEERGDNHWGKVMYCDPPQHFPDVSYYWVREYFPNFVEEDKRVFVSHDGALYFSALET 361

Query: 361 IDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLE 420
           ID GNYSC VQ+   D GRNGPFFPLKV  HS+FQQLKFPNNFPK FPEAP AG+ VRLE
Sbjct: 362 IDRGNYSCYVQNIAFDIGRNGPFFPLKVDMHSSFQQLKFPNNFPKAFPEAPIAGETVRLE 421

Query: 421 CVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKM--RGPYFIKQPTDVV----- 473
           C+AFGYPVPSYNWT+RGS LPR AY  NFNR+L +P V +  +G Y  +   D +     
Sbjct: 422 CIAFGYPVPSYNWTKRGSILPRGAYTANFNRVLILPRVHVEDQGEYVCRVYNDRLSIENS 481

Query: 474 FDLSKRSILN--------------DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 519
             L+ ++  N              D+T +C A G P+ +Y WFK   + D L     D  
Sbjct: 482 VQLTIQATPNFTIPLVDKHMDDHADLTWTCEAFGIPDVTYSWFKNGKLLDSLSLEERD-- 539

Query: 520 SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK----- 574
              R+T+    L I+     +D+G Y C A N+  +  S +          F  +     
Sbjct: 540 ---RYTIQDNVLNIHHVDSEKDQGMYQCCARNQLRTTYSSAQLRVLSLKPSFKKRPMESE 596

Query: 575 -RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQ 633
             A E GN      + C+P    P   + W +D   N +    R  +   G L  S + +
Sbjct: 597 TYAAEGGN----VTIMCNPEAA-PRPKFIWKKD--GNIIGSGGRRRILETGNLIISPVSR 649

Query: 634 IDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLE 693
            D G Y C   ++  +    G    L+      F Q + P+     +       + + L 
Sbjct: 650 DDEGTYVCTATNQYGNDETRGRLIVLR---GPQFVQ-RLPSQIILYY------NNNLTLH 699

Query: 694 CVAFGYPV--PSYNWTRRGSPLPRNAYFENFNRI------LTIPNVKVEDQGEYICRASN 745
           C+     +   +Y WT  G  + R+   +N  R+      L I N    + GEY C   +
Sbjct: 700 CLGHIDEMLDIAYIWTHNGMRI-RDKDLQNNPRLNIDGEYLNIINATFTEAGEYECILKS 758

Query: 746 DRSALESSVTISIQAEPNFTIPLTDKHM-DNQADLTWTCEAF-GVPDVTYS 794
              A+ S + + +Q  P     +   ++    A L W+  A  G P   Y+
Sbjct: 759 AVGAISSKLNLIVQGPPGPPGGVQVMNIFKTSATLRWSDGAMNGKPITMYT 809

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242009529|ref|XP_002425536.1| Contactin precursor, putative [Pediculus humanus corporis] gi|212509411|gb|EEB12798.1| Contactin precursor, putative [Pediculus humanus corporis]

 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/763 (44%), Positives = 464/763 (60%), Gaps = 44/763 (5%)

Query: 24  ELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFW 83
           E EL+CPQHW QY+ SCYRF+KSP++ R DAK NC++  SDL +VN  +EHGF++YQL W
Sbjct: 69  EYELKCPQHWEQYQQSCYRFIKSPMRAREDAKKNCEAYHSDLVSVNSLEEHGFLIYQLLW 128

Query: 84  QDPQRRKWYFGGTQQSPNLWVNE-DGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRW 142
           +DPQ RKWY    Q +P  WVN+ DG+ L  ++ AFLP   +N   DYL YS+S +LKRW
Sbjct: 129 RDPQHRKWYTSIRQHNPGNWVNDGDGSPLLNMENAFLPSQDNNYGSDYLVYSYSHNLKRW 188

Query: 143 GFERVTGMEPLLFICEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFD 202
           GF+ V G E  L+ICEA I KLHY+  D+RT++YG+++ +P+KIP GPYFI QP DVVFD
Sbjct: 189 GFKAVKGDEQFLYICEAHIGKLHYMSVDERTHEYGINVNDPNKIPMGPYFIMQPQDVVFD 248

Query: 203 LSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIIND 262
           +S   + ND+TL C AGGYP+P+YEWFKE+Y  D L + LI+PL DKR+T+SGGNLII D
Sbjct: 249 VSNVKVTNDVTLRCLAGGYPSPTYEWFKEEYENDVLTSVLINPLVDKRYTISGGNLIIYD 308

Query: 263 PRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTN 322
           P+Q+EDRGSYHCKA+NKFGSI+SES++L+FG+I EFNL+RAPE GNQNWGK ++CDPP +
Sbjct: 309 PKQIEDRGSYHCKATNKFGSILSESIKLSFGYINEFNLQRAPESGNQNWGKTIYCDPPPH 368

Query: 323 YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGP 382
           +P +NY W RDYFPNFVEED+RVFVS+DGALYFSAL++ID G+YSC  QSKVS  GR GP
Sbjct: 369 FPDINYKWTRDYFPNFVEEDRRVFVSFDGALYFSALQEIDRGSYSCTAQSKVSSIGRTGP 428

Query: 383 FFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPR 442
           FF L V  + N+QQLKFPNNFPK FPEAP AG  VRLEC+AFGYPVP+YNWTRRG+P+PR
Sbjct: 429 FFHLNVVTNPNYQQLKFPNNFPKVFPEAPLAGKDVRLECIAFGYPVPTYNWTRRGAPMPR 488

Query: 443 NAYFENFNRILTIP--NVKMRGPYF-----------------IKQPTDVVFDLSKRSI-- 481
            + F NFNR+L +P  +V+ +G Y                  I+   +    L+ + +  
Sbjct: 489 GSVFTNFNRVLILPQASVEDQGEYVCRAFNDRASIENGVFVSIQAEPNFTIPLADKHLDY 548

Query: 482 LNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 541
             D+T +C A G P+ +Y WF+     +      + P    R+ +    L I     + D
Sbjct: 549 QEDLTWTCEAFGIPDVNYTWFRNGLPLNPFN---LPPQDRDRYFVQDNILQIKRLNPLSD 605

Query: 542 RGSYHCKASNKFGSIISESVQLAFGFIGEFNLK--RAPEIGNQNWGKAMFCDPPTNYPGV 599
            G Y C+ASN+  +  S +      F   F  K   A     +     + C+P    P  
Sbjct: 606 AGMYQCRASNQLKTKYSSAQLRVLSFKPSFEKKPLEAETYAAEGGNVTIVCNPEAA-PRP 664

Query: 600 NYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPL 659
            + W ++   + +    R  +  +G L  S + + D G Y+C   +        G    L
Sbjct: 665 KFVWKKNN--DILGSGGRRKILENGNLIISPVSRDDEGLYTCTASNNYGVDESRGLLIVL 722

Query: 660 KVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPR---- 715
           +          K  + FP     +      +  E         +Y WT  G  +      
Sbjct: 723 RA--------PKMTSTFPPQIITSVMENFTLNCEANTDELLDTAYIWTHNGIRIKERDSS 774

Query: 716 NAYFENFNRILTIPNVKVEDQGEYIC--RASNDRSALESSVTI 756
           N        IL + N  + + GEY C  +++  R + +++V +
Sbjct: 775 NLRLIPDGGILHVINTTLAEAGEYECIVKSAVGRISTKTNVIV 817

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307210402|gb|EFN86967.1| Contactin [Harpegnathos saltator]

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/839 (43%), Positives = 486/839 (57%), Gaps = 77/839 (9%)

Query: 3   LISSCLFIFVSFHSVFSQTI--DELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS 60
           L+   +F  V    V++Q+   +E   +CP HW++++ SCYRF+ SPL++R +A+ NC++
Sbjct: 4   LLCVVVFSLVLSLPVYAQSTFYEESTYQCPLHWIKFQQSCYRFINSPLRSRENARKNCQA 63

Query: 61  LDSDLANVNDADEHGFIMYQLFWQDPQ--RRKWYFGGTQQSPNLWVNE-DGTNLNELDAA 117
             SDL  +N  DEHGF++ Q F  + Q    +WY G  QQ+  +W+NE D TNL  LD+ 
Sbjct: 64  FQSDLLTINSVDEHGFVI-QHFRDNDQYHHHRWYIGVKQQN-GIWINEADNTNLINLDSI 121

Query: 118 FLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEASIQKLHYLLNDDRTYQYG 177
           FLPEP DN+ RDYLAYSFS SL RWG ERVTG++ LL+ICEASI  L  L+ DDRTYQYG
Sbjct: 122 FLPEPNDNIIRDYLAYSFSISLNRWGLERVTGLDELLYICEASIAALRNLVEDDRTYQYG 181

Query: 178 MDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDR 237
           ++I NP +IPRGPYFIKQP   VFD+SK+ I ND+ LSC AGGYP P+YEWFKE+Y  DR
Sbjct: 182 IEIYNPLEIPRGPYFIKQPKSKVFDVSKKRISNDVYLSCLAGGYPTPTYEWFKENYENDR 241

Query: 238 LVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGE 297
           L+A  IDP+S+ R+T+SGG LII +P Q  DRG+YHCKASNKFG IISESV+L+FG+I E
Sbjct: 242 LIAIKIDPISNNRYTVSGGTLIIYEPEQKIDRGTYHCKASNKFGIIISESVELSFGYILE 301

Query: 298 FNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSA 357
           FNLKR+ E G+ +WGKA++CDPP ++PGV YYWARDYFPNFVEEDKRVFVS+DGALYFSA
Sbjct: 302 FNLKRSEERGDNHWGKAVYCDPPQHFPGVKYYWARDYFPNFVEEDKRVFVSHDGALYFSA 361

Query: 358 LEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKV 417
           LE ID GNYSCNVQS  SDTGRNGPFFPL+V  HS+FQQLKFPNNFPK FPEAP AG++V
Sbjct: 362 LETIDRGNYSCNVQSVASDTGRNGPFFPLRVDMHSSFQQLKFPNNFPKAFPEAPIAGEEV 421

Query: 418 RLECVAFGYPVPSYNWTRRGS-----PLPRNAYFENFNRILTIPNVKM--RGPYFIKQPT 470
           RLEC+AFGYPVPS+NWTR+ S      LPR AY  +++R+L IP V++  +G Y  +   
Sbjct: 422 RLECIAFGYPVPSFNWTRKDSNLKDLTLPREAYTTSYDRVLIIPRVRVEDQGEYVCRAYN 481

Query: 471 DVV-----------------FDLSKRSILN--DITLSCYAGGYPNPSYEWFKEDYVQDRL 511
           D +                   L  + + N  D+T +C A G P+ +Y WF+   + D  
Sbjct: 482 DKLSIENSVQLTIQAEPTFTIPLVDKHMDNKGDLTWTCEAFGLPDVTYTWFRNGEIFDMF 541

Query: 512 VANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEF 571
               + P    R+ +    L I       D   Y C A N+  +  S +          F
Sbjct: 542 T---LPPEDRDRYIIQDNVLTIKGLNPERDEAMYQCCAKNQLKTTYSSAQLRVLSLKPSF 598

Query: 572 NLKRAP---EIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYF 628
             K+ P   E      G       P   P  ++ W +D         +R+    +G L  
Sbjct: 599 --KKRPMESETYAAEGGNVTLMCKPEAAPKPDFKWRKDKTTLGAGGRRRIV---NGNLII 653

Query: 629 SALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGD 688
           S + + D G Y C   ++       G    L+  P+       F    P     +     
Sbjct: 654 SPVSRDDEGTYVCVATNEYGQDETRGRLIVLRA-PY-------FIERLPTRIIMSYNQNQ 705

Query: 689 KVRLECVAFGYPV--PSYNWTRRGSPLPRNAYFENFNRI------LTIPNVKVEDQGEYI 740
            +R  C+ +   +   +Y W   G  + RN    N  RI      L I N    + G+Y 
Sbjct: 706 TLR--CLGYADEMLDMAYIWKHNGMRI-RNKDLMNNPRIHVDGEYLDIINATFVETGDYE 762

Query: 741 CRASNDRSALESSVTISIQ--------------AEPNFTIPLTDKHMDNQADLTWTCEA 785
           C   +    + S   + ++              A+ + TI  TD  ++ +    +  EA
Sbjct: 763 CVLKSAVGEISSKTILIVEGPPGPPGGILVMNVAKTSATIRWTDGALNGRLITMYRVEA 821

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|183979292|dbj|BAG30765.1| contactin [Papilio xuthus]

 Score =  573 bits (1478), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 320/774 (41%), Positives = 432/774 (55%), Gaps = 57/774 (7%)

Query: 24  ELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFW 83
           E   RCP +W++YR+SCYRF KSP + RN+A+  C++  +DLA+VN  +EHGFI+  L  
Sbjct: 116 EERYRCPPNWIRYRESCYRFTKSPDRPRNEARKICQAYSADLASVNTPEEHGFIITNLMK 175

Query: 84  QDPQRRKWYFGGTQQSPNLWVNE-DGTNLNELDAAFLPEPADNVQR------DYLAYSFS 136
            DPQ+  WY G  QQSP  W NE DG+ L  L+ AF  +    +        DYL Y F 
Sbjct: 176 LDPQKGSWYIGAHQQSPGYWANEGDGSQLTGLENAFFDDHKLTLTSYNLYPLDYLVYRFM 235

Query: 137 QSLKRWGFERVTGMEPLLFICEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQP 196
           Q   RWG   V G +   FICE   Q+LHYL+ ++R++ YG++  +P+ IPRGP+  K+P
Sbjct: 236 QEEGRWGLAPVEGTQYYHFICEGQTQRLHYLIEEERSFTYGLERFDPEAIPRGPFLTKEP 295

Query: 197 TDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGG 256
            D ++D  +      + L+C AGG+P P+Y+WF+EDY  D+LV   IDPL D RF LSGG
Sbjct: 296 VDTIYDPLRNHY---VQLTCIAGGFPGPTYKWFREDYQVDKLVFTEIDPLLDPRFILSGG 352

Query: 257 NLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMF 316
            L+I +P    D   YHC ASNKFG+I SESV+L+FGFI EFN KR  E GNQ WGK M 
Sbjct: 353 TLMIYNPNAETDNAQYHCTASNKFGTIRSESVRLSFGFIREFNQKRPIESGNQYWGKVMS 412

Query: 317 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSD 376
           CDPP+ YP VN+ WAR+YFPN VEEDKRVFVSYDG LYFSALE ID GNYSCNV SKVSD
Sbjct: 413 CDPPSYYPSVNFLWARNYFPNLVEEDKRVFVSYDGGLYFSALETIDRGNYSCNVMSKVSD 472

Query: 377 TGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRR 436
            GRNGPFFPL V+PHS++QQLKFPNNFPK FP+AP  G +VRLECV+FGYPVPSYNWTR+
Sbjct: 473 AGRNGPFFPLYVYPHSDWQQLKFPNNFPKVFPDAPVVGQEVRLECVSFGYPVPSYNWTRK 532

Query: 437 GSPLPRNAYFENFNRILTIPNVKM--RGPY---------------FIKQPTDVVFD--LS 477
              +PR A+F NF+R+LTIPNV +   G Y               F+K   +  F   L+
Sbjct: 533 NGNIPRKAHFSNFDRVLTIPNVGVEDEGEYVCDVRSDRANIHNSVFLKVQAEPNFTIPLA 592

Query: 478 KRSILN--DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIIND 535
            + + N  D+  +C A G P+ +Y W+K      +L  + ++     R+ +    LII  
Sbjct: 593 DKHMDNKGDLHWNCEAFGIPDVNYTWWKNGV---KLSMDTLEDEDRDRYIIQDNVLIIKF 649

Query: 536 PRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK--RAPEIGNQNWGKAMFCDPP 593
                D G Y C+A N+  +  S            F  +   +   G++     + C+P 
Sbjct: 650 LDPARDPGMYQCEAKNQLKAKYSTGQLRVLSLKPSFKKRPLESETYGSEGGNVTLKCNPE 709

Query: 594 TNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRN 653
              P   + W +D     +    + F++  G L    L + D G Y+C  +++       
Sbjct: 710 AA-PKPTFTWKKDNI--VIGAGGKRFITETGNLIIRQLSRDDEGVYTCVAKNQYGSDESR 766

Query: 654 GPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPV--PSYNWTRRGS 711
           G    L+          +F    P       + G  + L C A   P+   +Y W   G 
Sbjct: 767 GRLIVLRT--------PRFLERLPPRI--TTQVGQVIFLHCNAEIDPILDTAYLWNHNGM 816

Query: 712 PLPRNAYFENFNRI------LTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 759
            L   +      R+      LTI +V + D G+Y C   +    + S   + I+
Sbjct: 817 RLKDESDMYADKRLKIDGGELTIFDVSLSDVGDYECVVKSAIGRISSHTQLRIE 870

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270015155|gb|EFA11603.1| hypothetical protein TcasGA2_TC013632 [Tribolium castaneum]

 Score =  565 bits (1457), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 319/765 (41%), Positives = 430/765 (56%), Gaps = 97/765 (12%)

Query: 26  ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD-----SDLANVNDADEHGFIMYQ 80
           +L+CP+HWV+   SCYRF++SPL+   +A+  C++       SDL ++   +EHGF++ Q
Sbjct: 123 DLKCPEHWVRLYQSCYRFIRSPLRPYEEARRICEAYSPEDGRSDLVSIGSTEEHGFLINQ 182

Query: 81  LFWQDPQRRKWYFGGTQQSPNLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLK 140
           L   DPQ R+WY G  Q S N W N DG+ L  ++ AFLP  A+   +D+LA        
Sbjct: 183 LNALDPQHRRWYIGTYQHSANYWTNVDGSQLVNMENAFLPV-AEPYGKDHLA-------- 233

Query: 141 RWGFERVTGMEPLLFICEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQPTDVV 200
                                           TY YG++I NP++IPRGPYFIKQP D  
Sbjct: 234 --------------------------------TYTYGVEITNPEQIPRGPYFIKQPVDAT 261

Query: 201 FDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLII 260
           FD SK+ + NDI+LSC AGG+P P+YEWF+EDY  D+LVA  IDPLSD R+T+SGG LII
Sbjct: 262 FDSSKKMLYNDISLSCLAGGFPTPTYEWFREDYEIDKLVARRIDPLSDPRYTISGGMLII 321

Query: 261 NDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPP 320
           ++P +  D  +YHCKASNKFG+IISESVQL FGFI EF LKR+PE G++NWGKA++CDPP
Sbjct: 322 HEPEEKRDHATYHCKASNKFGTIISESVQLNFGFIKEFVLKRSPESGDKNWGKAIYCDPP 381

Query: 321 TNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRN 380
            ++P V Y W+RDYFPNFVEED+RVFVSYDGALYFSALE ID  NYSC+VQS+ SD+GRN
Sbjct: 382 NHFPSVRYSWSRDYFPNFVEEDRRVFVSYDGALYFSALETIDKANYSCSVQSEFSDSGRN 441

Query: 381 GPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPL 440
           GPFFPL V PHS++QQLKFPNNFPK FP+AP AG +VRLEC+AFGYPVPSYNWTRRG+PL
Sbjct: 442 GPFFPLMVNPHSHYQQLKFPNNFPKAFPDAPIAGKEVRLECMAFGYPVPSYNWTRRGAPL 501

Query: 441 PRNAYFENFNRILTIPNVKM--RGPYF-----------------IKQPTDVVFDLSKRSI 481
           PR+A   +FNR+LTIP+V++  +G Y                  I+   +    L+ R  
Sbjct: 502 PRSAVLSSFNRVLTIPHVQVEDQGEYVCRAYNDRASTENSLILNIQAEPNFTIPLADRHA 561

Query: 482 --LNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQV 539
              +++  +C A G P+ +Y W+K      +LV   ++P    R  +    L I    Q 
Sbjct: 562 DSKSELVWTCEAFGIPDVNYTWWKNG---RQLVMGYMEPEERDRIRIQDNVLTIRYLDQE 618

Query: 540 EDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK--RAPEIGNQNWGKAMFCDPPTNYP 597
            D G Y C+A+N   +  S +      F   F      A     +     + C+P    P
Sbjct: 619 RDPGMYQCRATNSLKTKYSSAQLRVLAFRPTFKKHPLEAETYAAEGGSVTIKCNPEAA-P 677

Query: 598 GVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFF 657
              + W +D   N +       +  +G L  S++ + D G Y+C   ++       G   
Sbjct: 678 RPEFVWKKD--GNVLGSGGHRRILENGNLVISSVSRDDEGQYTCRASNQFGVDESKGRLI 735

Query: 658 PLKVFPHSNFQQLKFPNNFPKTFPE-APKAGDKVRLECVAFGYPV--PSYNWTRRGSPLP 714
                       L+ P       P+     G    L C+A    +   +Y W+  G  + 
Sbjct: 736 -----------VLRGPRLIESLTPKIVTTVGRYFDLRCLAETEEMLDIAYVWSHNGIKI- 783

Query: 715 RNAYFENFN---RI----LTIPNVKVEDQGEYICRASNDRSALES 752
           R+   +N N   RI    L++ N    D GEY C   +    + S
Sbjct: 784 RDIDIKNMNYRLRIDGGFLSVTNATFTDAGEYECTIKSTVGKISS 828

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	813
FB|FBgn0037240	1390	Cont "Contactin" [Drosophila m	0.795	0.465	0.411	2.3e-144
MGI|MGI:99534	1028	Cntn3 "contactin 3" [Mus muscu	0.404	0.320	0.358	1.1e-49
RGD|3253	1028	Cntn3 "contactin 3 (plasmacyto	0.404	0.320	0.352	1.4e-49
UNIPROTKB|F1P3U6	1016	CNTN4 "Uncharacterized protein	0.403	0.322	0.340	1.6e-47
UNIPROTKB|Q9P232	1028	CNTN3 "Contactin-3" [Homo sapi	0.403	0.319	0.342	1.6e-47
ZFIN|ZDB-GENE-030131-5640	1114	cntn5 "contactin 5" [Danio rer	0.402	0.293	0.332	2.1e-47
UNIPROTKB|Q90W79	1027	CNTN5 "Contactin-5" [Gallus ga	0.400	0.317	0.333	3.8e-47
UNIPROTKB|Q9UQ52	1028	CNTN6 "Contactin-6" [Homo sapi	0.398	0.315	0.350	1.3e-46
UNIPROTKB|F1STI0	1103	CNTN5 "Uncharacterized protein	0.400	0.295	0.324	2.1e-46
UNIPROTKB|O94779	1100	CNTN5 "Contactin-5" [Homo sapi	0.400	0.296	0.327	2.7e-46

FB|FBgn0037240 Cont "Contactin" [Drosophila melanogaster (taxid:7227)]

 Score = 1217 (433.5 bits), Expect = 2.3e-144, Sum P(2) = 2.3e-144
 Identities = 289/703 (41%), Positives = 385/703 (54%)

Query:    99 SPNLWVNE-DGT----NLNELDAAFLP-EP-ADN-VQRDYLAYSFSQSLKRWGFERVTGM 150
             +PN + N   GT    N N L     P +P  DN   RD + Y+FS+   RW F     +
Sbjct:   259 NPNQFYNSLPGTVNQRNQNNLRGFIGPNQPYGDNRYVRDRVVYAFSKKRDRWMFMPAYEI 318

Query:   151 EPLLFICEASI----QKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKR 206
             E  LFICE+ +      ++  L+D R Y YG+DI + ++IPRGPYF+KQP D  FD++K 
Sbjct:   319 ELNLFICESKVLYSSDNVNIKLDDKRPYHYGLDINDMERIPRGPYFVKQPNDTTFDVNKN 378

Query:   207 SILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQV 266
              ++ND+TLSC A GYP PSY W++E YV DRL    IDPL+  R+T+SGGNLII +P+Q 
Sbjct:   379 RLINDVTLSCLANGYPTPSYTWYREVYVDDRLEYQKIDPLAQDRYTISGGNLIIYEPKQA 438

Query:   267 EDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGV 326
              D+G+YHC A NKFG I SES  L FGFI EFNLKR+ E    NWGK++FCDPP +YP V
Sbjct:   439 LDQGAYHCVAENKFGRIRSESAHLNFGFIMEFNLKRSAETSEMNWGKSIFCDPPQHYPDV 498

Query:   327 NYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPL 386
              YYWARDYFPNFVEED+RVFVS DGALYFS +E +D  NYSC VQ+ VSDTGRNGPFFPL
Sbjct:   499 RYYWARDYFPNFVEEDQRVFVSRDGALYFSFIETVDRANYSCTVQTLVSDTGRNGPFFPL 558

Query:   387 KVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF 446
             +V P+SN+Q L F N FPK FPEAP AGD++RLEC+AFGYP+PSYNWTR+G PL RNAY 
Sbjct:   559 RVTPNSNYQALIFANTFPKVFPEAPVAGDEIRLECMAFGYPIPSYNWTRQGLPLQRNAYT 618

Query:   447 ENFNRILTIPNVKMR--GPYF--IKQPT-----DVVFDLSKRSILNDITLSCYAGGYPNP 497
              N+ R+L I N      G Y   I  P       +  ++  R     I L      Y N 
Sbjct:   619 INYGRVLIIQNATTNDNGEYSCTITNPRKTLMKSIYINIQMRPQFT-IPLKDMIKDY-NS 676

Query:   498 SYEWFKEDY-VQDRLV-----ANLIDP--LSDKRFTLSGGNLIINDPRQVEDRGSYHCKA 549
                +  E + + D        A  +DP  ++  R+ +    L I    + +D   Y C A
Sbjct:   677 DVTFICEAFAIPDANYTWYKNAERLDPANINRDRYIIQDNVLTIKFLEKDKDDAMYQCGA 736

Query:   550 SNKFGSIISESVQLAFGFIGEFNLKRAP---EIGNQNWGKAMFCDPPTNYPGVNYYWARD 606
              N+  +  S S QL    +   + K+ P   E+     G       P   P   + W +D
Sbjct:   737 QNQLKTSFS-SAQLRVLSMKP-SFKKHPLESEVYAVYNGNTTIVCDPEAAPRPKFQWKKD 794

Query:   607 YFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSN 666
                      +R+  S  G L  S   + D G Y+C + S  + T  +      +V     
Sbjct:   795 GQVIGSGGHRRILPS--GTLTISPTSRDDEGIYTC-IASNQAGTDESHA----RVIV--- 844

Query:   667 FQQLKFPNNFPKTFPEAPKAGDKVRLEC-VAFGYPVP-SYNWTRRGSPLPRN-----AYF 719
              Q+++F    P+      K  D + L C  AF   +  +Y W   G  L  N        
Sbjct:   845 LQEIRFIETPPQRI--VSKEHDLIFLHCEAAFDELLDIAYVWKHNGEVLKNNHDGTGRII 902

Query:   720 ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEP 762
              ++NR LT+ N  + D G+Y C   +  + + S  ++SI+  P
Sbjct:   903 VDWNR-LTVHNTSMRDAGDYECVVKSAVNEISSKTSVSIEGAP 944

GO:0007155 "cell adhesion" evidence=ISS

GO:0005918 "septate junction" evidence=IDA;NAS

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0019991 "septate junction assembly" evidence=IMP

GO:0005919 "pleated septate junction" evidence=IDA

GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=IC

GO:0021682 "nerve maturation" evidence=IMP

GO:0008366 "axon ensheathment" evidence=IMP

GO:0060857 "establishment of glial blood-brain barrier" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

MGI|MGI:99534 Cntn3 "contactin 3" [Mus musculus (taxid:10090)]

 Score = 544 (196.6 bits), Expect = 1.1e-49, P = 1.1e-49
 Identities = 124/346 (35%), Positives = 177/346 (51%)

Query:   460 MRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 519
             ++GP FIK+P++ +F +        ITL+C A G P+P Y W        +L  + ID  
Sbjct:    23 LQGPVFIKEPSNSIFPVDSED--KKITLNCEARGNPSPHYRW--------QLNGSDIDTS 72

Query:   520 SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEI 579
              D R+ L+GGNLI+ +P +  D GSY C A+N  G+I+S   +L F ++  F  +    +
Sbjct:    73 LDHRYKLNGGNLIVINPNRNWDTGSYQCFATNSLGTIVSREAKLQFAYLENFKTRMRSTV 132

Query:   580 G-NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD-GALYFSALEQIDAG 637
                +  G  + C PP +   ++Y W  + +P+FVEED R FVS + G LY + +E  D G
Sbjct:   133 SVREGQGVVLLCGPPPHSGELSYAWVFNEYPSFVEEDSRRFVSQETGHLYIAKVEPSDVG 192

Query:   638 NYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQL--KFPNNFPKTFPEAPKAGDKVRLECV 695
             NY+C V S V++T   G   PL +       +   K    FP+T P A   G  VRLEC 
Sbjct:   193 NYTCVVTSTVTNTRVLGSPTPLVLRSDGVMGEYEPKIEVQFPETLPAAK--GSTVRLECF 250

Query:   696 AFGYPVPSYNWTRR-GSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSV 754
             A G PVP  NW R  G P P       FN +L I N + ED G Y C A N R    +  
Sbjct:   251 ALGNPVPQINWRRSDGMPFPNKIKLRKFNGMLEIQNFQQEDTGSYECIAENSRGKNVARG 310

Query:   755 TISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
              ++  A+P +   L D  +  +  L W C A G P  +Y W +NG+
Sbjct:   311 RLTYYAKPYWLQLLRDVEIAVEDSLYWECRASGKPKPSYRWLKNGD 356

GO:0005886 "plasma membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007399 "nervous system development" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

RGD|3253 Cntn3 "contactin 3 (plasmacytoma associated)" [Rattus norvegicus (taxid:10116)]

 Score = 543 (196.2 bits), Expect = 1.4e-49, P = 1.4e-49
 Identities = 122/346 (35%), Positives = 176/346 (50%)

Query:   460 MRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 519
             ++GP F+K+P++ +F +        ITL+C A G P+P Y W        +L  + ID  
Sbjct:    23 LQGPVFVKEPSNSIFPVGSED--KKITLNCEARGNPSPHYRW--------QLNGSDIDTS 72

Query:   520 SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEI 579
              D R+ L+GGNLI+ +P +  D GSY C A+N  G+I+S   +L F ++  F  +    +
Sbjct:    73 LDHRYKLNGGNLIVINPNRNWDTGSYQCFATNSLGTIVSREAKLQFAYLENFKSRMRSRV 132

Query:   580 G-NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD-GALYFSALEQIDAG 637
                +  G  + C PP +   ++Y W  + +P+FVEED R FVS + G LY + +E  D G
Sbjct:   133 SVREGQGVVLLCGPPPHSGELSYAWVFNEYPSFVEEDSRRFVSQETGHLYIAKVEPSDVG 192

Query:   638 NYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQL--KFPNNFPKTFPEAPKAGDKVRLECV 695
             NY+C V S V++    G   PL +       +   K    FP+T P A   G  V+LEC 
Sbjct:   193 NYTCVVTSTVTNARVLGSPTPLVLRSDGVMGEYEPKIELQFPETLPAAK--GSTVKLECF 250

Query:   696 AFGYPVPSYNWTRR-GSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSV 754
             A G PVP  NW R  G P P       FN +L IPN + ED G Y C A N R    +  
Sbjct:   251 ALGNPVPQINWRRSDGMPFPTKIKLRKFNGVLEIPNFQQEDTGSYECIAENSRGKNVARG 310

Query:   755 TISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
              ++  A+P +   L D     +  L W C A G P  +Y W +NG+
Sbjct:   311 RLTYYAKPYWVQLLKDVETAVEDSLYWECRASGKPKPSYRWLKNGD 356

GO:0007399 "nervous system development" evidence=IDA

GO:0016337 "cell-cell adhesion" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=NAS

UNIPROTKB|F1P3U6 CNTN4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 525 (189.9 bits), Expect = 1.6e-47, P = 1.6e-47
 Identities = 118/347 (34%), Positives = 180/347 (51%)

Query:   460 MRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 519
             + GP F+++P+ V+F L        + L+C   G P P+  W        +L    ID  
Sbjct:    10 LHGPVFLQEPSSVIFPLDSEE--KKVKLNCEVKGNPRPTIGW--------KLNGTNIDIG 59

Query:   520 SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK-RAPE 578
              D R+++  GNL+IN+P + +D G+Y C A+N FG IIS   +L F ++  F  + R+  
Sbjct:    60 MDYRYSMVEGNLLINNPNRTQDTGTYQCVATNPFGRIISREAKLQFAYLENFKTRVRSTV 119

Query:   579 IGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD-GALYFSALEQIDAG 637
                Q  G  + C PP +   + Y W  + +P+FV +D R FVS + G LY + +E  D G
Sbjct:   120 SVRQGQGMVLLCGPPPHSGELTYAWIFNEYPSFVHQDNRRFVSQETGNLYIAKVEASDVG 179

Query:   638 NYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQ---QLKFPNNFPKTFPEAPKAGDKVRLEC 694
             NY+C V + V+++   GP  PL +  +       + K    FP+T P A   G  V+LEC
Sbjct:   180 NYTCVVTNTVTNSRVLGPPTPL-ILRNDGVMGEYEPKIEVQFPETVPSAK--GTAVKLEC 236

Query:   695 VAFGYPVPSYNWTRR-GSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESS 753
              A G PVP+ +W R  G  +PR A     N +L IPN + ED G Y C A N R    + 
Sbjct:   237 FALGNPVPTISWRRADGKQIPRKARRHRSNGLLEIPNFQQEDAGLYECVAENVRGKNVAR 296

Query:   754 VTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
               ++  A+PN+   ++D H   + ++ W C A G P  +Y W ++GE
Sbjct:   297 GQLTFYAQPNWIQKISDVHAAIEENVFWECHASGRPKPSYRWLKDGE 343

GO:0045665 "negative regulation of neuron differentiation" evidence=IEA

UNIPROTKB|Q9P232 CNTN3 "Contactin-3" [Homo sapiens (taxid:9606)]

 Score = 525 (189.9 bits), Expect = 1.6e-47, P = 1.6e-47
 Identities = 118/345 (34%), Positives = 175/345 (50%)

Query:   460 MRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 519
             ++GP FIK+P++ +F +        ITL C A G P+P Y W        +L  + ID  
Sbjct:    23 LQGPVFIKEPSNSIFPVGSED--KKITLHCEARGNPSPHYRW--------QLNGSDIDMS 72

Query:   520 SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEI 579
              + R+ L+GGNL++ +P +  D G+Y C A+N  G+I+S   +L F ++  F  K    +
Sbjct:    73 MEHRYKLNGGNLVVINPNRNWDTGTYQCFATNSLGTIVSREAKLQFAYLENFKTKMRSTV 132

Query:   580 G-NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD-GALYFSALEQIDAG 637
                +  G  + C PP +   ++Y W  + +P+FVEED R FVS + G LY S +E  D G
Sbjct:   133 SVREGQGVVLLCGPPPHSGELSYAWIFNEYPSFVEEDSRRFVSQETGHLYISKVEPSDVG 192

Query:   638 NYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQL--KFPNNFPKTFPEAPKAGDKVRLECV 695
             NY+C V S V++    G   PL +       +   K    FP+T P A   G  V+LEC 
Sbjct:   193 NYTCVVTSMVTNARVLGSPTPLVLRSDGVMGEYEPKIEVQFPETLPAAK--GSTVKLECF 250

Query:   696 AFGYPVPSYNWTRR-GSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSV 754
             A G P+P  NW R  G P         F+ +L IPN + ED G Y C A N R    +  
Sbjct:   251 ALGNPIPQINWRRSDGLPFSSKIKLRKFSGVLEIPNFQQEDAGSYECIAENSRGKNVARG 310

Query:   755 TISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNG 799
              ++  A+P++   + D  +  +  L W C A G P  +Y W +NG
Sbjct:   311 RLTYYAKPHWVQLIKDVEIAVEDSLYWECRASGKPKPSYRWLKNG 355

GO:0007155 "cell adhesion" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

ZFIN|ZDB-GENE-030131-5640 cntn5 "contactin 5" [Danio rerio (taxid:7955)]

 Score = 525 (189.9 bits), Expect = 2.1e-47, P = 2.1e-47
 Identities = 114/343 (33%), Positives = 170/343 (49%)

Query:   462 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 521
             GP FI++P D +F L        I ++C A G P P+Y W         +    +D  +D
Sbjct:   114 GPVFIQEPDDAIFSLDSDD--KKIIMNCEARGNPVPTYSWL--------INGTNVDTEAD 163

Query:   522 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIG- 580
              R++L  GNLII++  +V D G Y C+A N  G ++S    L F ++G F+ K    +  
Sbjct:   164 FRYSLIDGNLIIHNASEVIDYGRYQCRAENSIGIVLSRDALLQFAYLGPFSGKTRGAVSV 223

Query:   581 NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD-GALYFSALEQIDAGNY 639
              +  G  + C PP++ P + Y W  +  P+FV ED R F+S + G LY S ++  D G+Y
Sbjct:   224 REGQGVVLMCAPPSHSPEIIYSWVFNELPSFVAEDSRRFISQETGNLYISKVQPSDVGSY 283

Query:   640 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQL--KFPNNFPKTFPEAPKAGDKVRLECVAF 697
              C V++ V++     P  PL +       +   K   +FP+T   A   G  VRLEC A 
Sbjct:   284 VCQVKNTVTNARVLSPPTPLTLKTDGVMGEYEPKIEAHFPQTVLAAK--GVTVRLECFAL 341

Query:   698 GYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS 757
             G PVP+  W +    +P+ A       +L IPN+++ED G Y C+A N R        + 
Sbjct:   342 GNPVPTITWRKMSGNIPKKARLRKSQAVLEIPNIQLEDSGSYECKAENTRGGTAFRGHLQ 401

Query:   758 IQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
             +   P +   + D  +D+   L W C A G P  TY W RNGE
Sbjct:   402 VYTLPQWISMINDTQLDSGEQLRWECRATGKPRPTYRWLRNGE 444

GO:0007155 "cell adhesion" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|Q90W79 CNTN5 "Contactin-5" [Gallus gallus (taxid:9031)]

 Score = 529 (191.3 bits), Expect = 3.8e-47, Sum P(2) = 3.8e-47
 Identities = 114/342 (33%), Positives = 172/342 (50%)

Query:   462 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 521
             GP F+++P DV+F          ++L+C A G P P+Y W +            ID  SD
Sbjct:    25 GPVFVQEPDDVIFPTDSEE--KKVSLNCQAHGSPTPTYRWLRN--------GTEIDVESD 74

Query:   522 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIG- 580
              R++L  G+LII++P +++D G Y C  +N FGSI+S    L F ++G F+ +    +  
Sbjct:    75 YRYSLIEGSLIISNPNEMKDSGQYQCLTTNMFGSILSREAVLQFAYLGNFSGRTRSAVSV 134

Query:   581 NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD-GALYFSALEQIDAGNY 639
              +  G  + C PP + P + Y W  + FP+FV ED R F+S + G LY S ++  D G+Y
Sbjct:   135 REGQGVVLMCSPPLHSPEIIYSWVFNEFPSFVAEDSRRFISQETGNLYISKVQTSDVGSY 194

Query:   640 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQL--KFPNNFPKTFPEAPKAGDKVRLECVAF 697
              C V++ V++     P  PL +       +   K   +FP T   A   G  V++EC A 
Sbjct:   195 ICLVKNTVTNARVLSPPTPLTLRNDGVMGEYEPKIEVHFPYTVTAA--RGTTVKMECFAL 252

Query:   698 GYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS 757
             G PVP+ +W +     P  A       +L IPNV++ED G Y C+A N R        + 
Sbjct:   253 GNPVPTISWKKVNGHNPSKARLRKSQAVLEIPNVQLEDAGMYECKAENSRGRNVFRGQLQ 312

Query:   758 IQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNG 799
             +   P +   L D  +D+   L W C+A G P  TY W +NG
Sbjct:   313 VYTYPQWVEKLNDTELDSGEQLRWECKATGKPRPTYRWLKNG 354

GO:0007155 "cell adhesion" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|Q9UQ52 CNTN6 "Contactin-6" [Homo sapiens (taxid:9606)]

 Score = 517 (187.1 bits), Expect = 1.3e-46, P = 1.3e-46
 Identities = 121/345 (35%), Positives = 177/345 (51%)

Query:   463 PYFIKQPTDVVF--DLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 520
             P F ++P DV+F  DLSK    +++ L+C A GYP+P Y W K++          ID   
Sbjct:    26 PIFTQEPHDVIFPLDLSK----SEVILNCAANGYPSPHYRW-KQNGTD-------IDFTM 73

Query:   521 DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIG 580
                + L GG+L IN P   +D G Y C A+N  G+I+S   +L F +I +F  K    + 
Sbjct:    74 SYHYRLDGGSLAINSPHTDQDIGMYQCLATNLLGTILSRKAKLQFAYIEDFETKTRSTVS 133

Query:   581 -NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD-GALYFSALEQIDAGN 638
               +  G  + C PP ++  ++Y W  +  P +V+ED R FVS + G LY + +E  D GN
Sbjct:   134 VREGQGVVLLCGPPPHFGDLSYAWTFNDNPLYVQEDNRRFVSQETGNLYIAKVEPSDVGN 193

Query:   639 YSCNVQSKVSDTGRNGPFFPL--KVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVA 696
             Y+C + +K +     GP  PL  +        + K    FP+T  +A K    V+LEC A
Sbjct:   194 YTCFITNKEAQRSVQGPPTPLVQRTDGVMGEYEPKIEVRFPETI-QAAK-DSSVKLECFA 251

Query:   697 FGYPVPSYNWTRR-GSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVT 755
              G PVP  +W R  GSPLP    +     IL IPN + ED+G Y C ASN R    +   
Sbjct:   252 LGNPVPDISWRRLDGSPLPGKVKYSKSQAILEIPNFQQEDEGFYECIASNLRGRNLAKGQ 311

Query:   756 ISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
             +   A P +   + + H+    +L W C+A G P+  Y+W +NGE
Sbjct:   312 LIFYAPPEWEQKIQNTHLSIYDNLLWECKASGKPNPWYTWLKNGE 356

GO:0007155 "cell adhesion" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007417 "central nervous system development" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

UNIPROTKB|F1STI0 CNTN5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 516 (186.7 bits), Expect = 2.1e-46, P = 2.1e-46
 Identities = 111/342 (32%), Positives = 171/342 (50%)

Query:   462 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 521
             GP F+++P D++F          + L+C A G P P+Y W +            ID  SD
Sbjct:    99 GPVFLQEPDDIIFPTDSDE--KKVALNCEARGNPVPNYRWLRN--------GTEIDLESD 148

Query:   522 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIG- 580
              R++L  G  II++P + +D G Y C A+N FGS++S    L F ++G F+ +    +  
Sbjct:   149 YRYSLIDGTFIISNPSEAKDSGHYQCLAANTFGSVLSREAILQFAYLGNFSGRTRSAVSV 208

Query:   581 NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD-GALYFSALEQIDAGNY 639
              +  G  + C PP + P + Y W  + FP+FV ED R F+S + G LY S ++  D G+Y
Sbjct:   209 REGQGVVLMCSPPPHSPEIIYSWVFNEFPSFVAEDSRRFISQETGNLYISKVQTSDVGSY 268

Query:   640 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQL--KFPNNFPKTFPEAPKAGDKVRLECVAF 697
              C V++ V++     P  PL +       +   K   +FP T   A   G  V++EC A 
Sbjct:   269 ICLVKNTVTNARVLSPPTPLTLRNDGVMGEYEPKIEVHFPFTVTAAK--GTTVKMECFAL 326

Query:   698 GYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS 757
             G PVP+  W +    +P  +       +L IPNV+++D G Y CRA N R        + 
Sbjct:   327 GNPVPTITWMKVNGYIPSKSRLRKSQAVLEIPNVQLDDAGIYECRAENSRGKNSFRGQLQ 386

Query:   758 IQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNG 799
             +   P++   L D  +D+ + L W C+A G P  TY W +NG
Sbjct:   387 VYTYPHWVEKLNDTQLDSGSPLRWECKATGKPRPTYRWLKNG 428

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|O94779 CNTN5 "Contactin-5" [Homo sapiens (taxid:9606)]

 Score = 515 (186.3 bits), Expect = 2.7e-46, P = 2.7e-46
 Identities = 112/342 (32%), Positives = 169/342 (49%)

Query:   462 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 521
             GP F+++P D++F          + L+C   G P PSY W +            ID  SD
Sbjct:    98 GPVFVQEPDDIIFPTDSDE--KKVALNCEVRGNPVPSYRWLRN--------GTEIDLESD 147

Query:   522 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIG- 580
              R++L  G  II++P + +D G Y C A+N  GSI+S    L F ++G F+ +    +  
Sbjct:   148 YRYSLIDGTFIISNPSEAKDSGHYQCLATNTVGSILSREATLQFAYLGNFSGRTRSAVSV 207

Query:   581 NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD-GALYFSALEQIDAGNY 639
              +  G  + C PP + P + Y W  + FP+FV ED R F+S + G LY S ++  D G+Y
Sbjct:   208 REGQGVVLMCSPPPHSPEIIYSWVFNEFPSFVAEDSRRFISQETGNLYISKVQTSDVGSY 267

Query:   640 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQL--KFPNNFPKTFPEAPKAGDKVRLECVAF 697
              C V++ V++     P  PL +       +   K   +FP T   A   G  V++EC A 
Sbjct:   268 ICLVKNTVTNARVLSPPTPLTLRNDGVMGEYEPKIEVHFPFTVTAAK--GTTVKMECFAL 325

Query:   698 GYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS 757
             G PVP+  W +    +P  A       +L IPNV+++D G Y CRA N R        + 
Sbjct:   326 GNPVPTITWMKVNGYIPSKARLRKSQAVLEIPNVQLDDAGIYECRAENSRGKNSFRGQLQ 385

Query:   758 IQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNG 799
             +   P++   L D  +D+ + L W C+A G P  TY W +NG
Sbjct:   386 VYTYPHWVEKLNDTQLDSGSPLRWECKATGKPRPTYRWLKNG 427

GO:0007155 "cell adhesion" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	813
cd05727	96	cd05727, Ig2_Contactin-2-like, Second Ig domain of	1e-34
cd05727	96	cd05727, Ig2_Contactin-2-like, Second Ig domain of	1e-34
cd04967	91	cd04967, Ig1_Contactin, First Ig domain of contact	6e-18
cd04967	91	cd04967, Ig1_Contactin, First Ig domain of contact	6e-18
cd05848	94	cd05848, Ig1_Contactin-5, First Ig domain of conta	3e-17
cd05848	94	cd05848, Ig1_Contactin-5, First Ig domain of conta	3e-17
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	5e-15
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	7e-14
cd05849	93	cd05849, Ig1_Contactin-1, First Ig domain of conta	9e-14
cd05849	93	cd05849, Ig1_Contactin-1, First Ig domain of conta	9e-14
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	1e-13
smart00410	85	smart00410, IG_like, Immunoglobulin like	1e-13
smart00409	85	smart00409, IG, Immunoglobulin	1e-13
cd05850	94	cd05850, Ig1_Contactin-2, First Ig domain of conta	6e-13
cd05850	94	cd05850, Ig1_Contactin-2, First Ig domain of conta	6e-13
cd00096	74	cd00096, Ig, Immunoglobulin domain	3e-12
smart00034	124	smart00034, CLECT, C-type lectin (CTL) or carbohyd	4e-12
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	2e-11
cd05754	85	cd05754, Ig3_Perlecan_like, Third immunoglobulin (	2e-11
cd05876	71	cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik	3e-11
cd03593	116	cd03593, CLECT_NK_receptors_like, C-type lectin-li	2e-10
cd00037	116	cd00037, CLECT, C-type lectin (CTL)/C-type lectin-	3e-09
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	4e-09
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	4e-09
cd05851	88	cd05851, Ig3_Contactin-1, Third Ig domain of conta	7e-09
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	8e-09
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	8e-09
cd00096	74	cd00096, Ig, Immunoglobulin domain	1e-08
cd00096	74	cd00096, Ig, Immunoglobulin domain	1e-08
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	1e-08
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	2e-08
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	3e-08
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	7e-08
smart00410	85	smart00410, IG_like, Immunoglobulin like	1e-07
smart00410	85	smart00410, IG_like, Immunoglobulin like	1e-07
smart00409	85	smart00409, IG, Immunoglobulin	1e-07
smart00409	85	smart00409, IG, Immunoglobulin	1e-07
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	2e-07
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	2e-07
cd03590	126	cd03590, CLECT_DC-SIGN_like, C-type lectin-like do	2e-07
cd05743	78	cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-	2e-07
pfam00047	62	pfam00047, ig, Immunoglobulin domain	2e-07
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	3e-07
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	3e-07
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	4e-07
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	4e-07
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	7e-07
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	7e-07
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	7e-07
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	8e-07
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	8e-07
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	8e-07
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	8e-07
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	1e-06
cd05722	95	cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-l	2e-06
cd05722	95	cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-l	2e-06
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	3e-06
cd05742	84	cd05742, Ig1_VEGFR_like, First immunoglobulin (Ig)	5e-06
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	7e-06
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	8e-06
cd05760	77	cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like	1e-05
cd05760	77	cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like	1e-05
cd05760	77	cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like	1e-05
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	2e-05
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	2e-05
cd05733	77	cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig	2e-05
cd05733	77	cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig	2e-05
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	2e-05
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	2e-05
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	2e-05
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	2e-05
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	3e-05
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	3e-05
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	3e-05
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	4e-05
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	4e-05
cd05734	79	cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-li	6e-05
cd05734	79	cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-li	6e-05
cd05848	94	cd05848, Ig1_Contactin-5, First Ig domain of conta	8e-05
smart00410	85	smart00410, IG_like, Immunoglobulin like	1e-04
smart00409	85	smart00409, IG, Immunoglobulin	1e-04
cd05734	79	cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-li	1e-04
cd05740	91	cd05740, Ig_CEACAM_D4, Fourth immunoglobulin (Ig)-	1e-04
cd03589	137	cd03589, CLECT_CEL-1_like, C-type lectin-like doma	1e-04
cd05750	75	cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-li	1e-04
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	2e-04
cd05862	86	cd05862, Ig1_VEGFR, First immunoglobulin (Ig)-like	2e-04
cd05738	74	cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu	2e-04
cd05738	74	cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu	2e-04
cd05876	71	cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik	3e-04
cd05754	85	cd05754, Ig3_Perlecan_like, Third immunoglobulin (	5e-04
cd05867	76	cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (I	5e-04
cd05867	76	cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (I	5e-04
pfam05473	191	pfam05473, Herpes_UL45, UL45 protein	5e-04
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	5e-04
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	6e-04
cd04967	91	cd04967, Ig1_Contactin, First Ig domain of contact	7e-04
cd05733	77	cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig	7e-04
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	8e-04
cd05869	97	cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-lik	9e-04
cd00096	74	cd00096, Ig, Immunoglobulin domain	0.001
PHA03097	157	PHA03097, PHA03097, C-type lectin-like protein; Pr	0.001
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	0.002
cd05875	77	cd05875, Ig6_hNeurofascin_like, Sixth immunoglobul	0.002
cd05875	77	cd05875, Ig6_hNeurofascin_like, Sixth immunoglobul	0.002
cd05732	96	cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig	0.002
cd05852	73	cd05852, Ig5_Contactin-1, Fifth Ig domain of conta	0.002
cd05851	88	cd05851, Ig3_Contactin-1, Third Ig domain of conta	0.003
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	0.003
cd05771	139	cd05771, IgC_Tapasin_R, Tapasin-R immunoglobulin-l	0.003
cd05845	95	cd05845, Ig2_L1-CAM_like, Second immunoglobulin (I	0.003
cd05845	95	cd05845, Ig2_L1-CAM_like, Second immunoglobulin (I	0.003
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	0.004
cd03594	129	cd03594, CLECT_REG-1_like, C-type lectin-like doma	0.004

>gnl|CDD|143204 cd05727, Ig2_Contactin-2-like, Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score =  126 bits (319), Expect = 1e-34
 Identities = 42/95 (44%), Positives = 55/95 (57%), Gaps = 2/95 (2%)

Query: 294 FIGEFNLKRAPEIGNQN-WGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVS-YDG 351
           F+ EF L+   E+  +  WG  +FCDPP +YP ++Y W  + FPNF+ ED R FVS  +G
Sbjct: 1   FLDEFPLEERDEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNG 60

Query: 352 ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPL 386
            LY + +E  D GNYSC V S  S       F PL
Sbjct: 61  NLYIAKVEASDRGNYSCFVSSPSSTKSVFSKFIPL 95

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 96

>gnl|CDD|143204 cd05727, Ig2_Contactin-2-like, Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score =  126 bits (319), Expect = 1e-34
 Identities = 42/95 (44%), Positives = 55/95 (57%), Gaps = 2/95 (2%)

Query: 567 FIGEFNLKRAPEIGNQN-WGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVS-YDG 624
           F+ EF L+   E+  +  WG  +FCDPP +YP ++Y W  + FPNF+ ED R FVS  +G
Sbjct: 1   FLDEFPLEERDEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNG 60

Query: 625 ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPL 659
            LY + +E  D GNYSC V S  S       F PL
Sbjct: 61  NLYIAKVEASDRGNYSCFVSSPSSTKSVFSKFIPL 95

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 96

>gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin

 Score = 79.0 bits (195), Expect = 6e-18
 Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 10/97 (10%)

Query: 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
           GP F +QP D +F   + S    ++L+C A G P P+Y W         +    ID   D
Sbjct: 1   GPVFEEQPDDTIF--PEESDEGKVSLNCRARGSPPPTYRW--------LMNGTEIDDEPD 50

Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIIS 285
            R++L GGNL+I++P + +D G Y C ASN  G+++S
Sbjct: 51  SRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVLS 87

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal activity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 91

>gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin

 Score = 79.0 bits (195), Expect = 6e-18
 Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 10/97 (10%)

Query: 462 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 521
           GP F +QP D +F   + S    ++L+C A G P P+Y W         +    ID   D
Sbjct: 1   GPVFEEQPDDTIF--PEESDEGKVSLNCRARGSPPPTYRW--------LMNGTEIDDEPD 50

Query: 522 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIIS 558
            R++L GGNL+I++P + +D G Y C ASN  G+++S
Sbjct: 51  SRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVLS 87

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal activity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 91

>gnl|CDD|143256 cd05848, Ig1_Contactin-5, First Ig domain of contactin-5

 Score = 77.3 bits (190), Expect = 3e-17
 Identities = 40/104 (38%), Positives = 56/104 (53%), Gaps = 10/104 (9%)

Query: 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
           GP F+++P D +F     S    + L+C A G P P+Y W +            ID  SD
Sbjct: 1   GPVFVQEPDDAIFPTD--SDEKKVILNCEARGNPVPTYRWLRN--------GTEIDTESD 50

Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAF 292
            R++L  GNLII++P +V+D G Y C A+N  GSI+S    L F
Sbjct: 51  YRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILSREALLQF 94

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. Length = 94

>gnl|CDD|143256 cd05848, Ig1_Contactin-5, First Ig domain of contactin-5

 Score = 77.3 bits (190), Expect = 3e-17
 Identities = 40/104 (38%), Positives = 56/104 (53%), Gaps = 10/104 (9%)

Query: 462 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 521
           GP F+++P D +F     S    + L+C A G P P+Y W +            ID  SD
Sbjct: 1   GPVFVQEPDDAIFPTD--SDEKKVILNCEARGNPVPTYRWLRN--------GTEIDTESD 50

Query: 522 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAF 565
            R++L  GNLII++P +V+D G Y C A+N  GSI+S    L F
Sbjct: 51  YRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILSREALLQF 94

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. Length = 94

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 69.7 bits (171), Expect = 5e-15
 Identities = 26/59 (44%), Positives = 31/59 (52%)

Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASN 745
           G  V L C A G PVP+  W + G PLP +  F      LTI +V +ED G Y C A N
Sbjct: 2   GQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFVASGSTLTIKSVSLEDSGLYTCVAEN 60

Length = 63

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 67.0 bits (164), Expect = 7e-14
 Identities = 29/55 (52%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 692 LECVAFGYPVPSYNWTRRGSPLPRN-AYFENFNRILTIPNVKVEDQGEYICRASN 745
           LEC+A G P P  +W + G  LP +   FENFN+ L I NV  ED GEY C ASN
Sbjct: 3   LECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASN 57

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143257 cd05849, Ig1_Contactin-1, First Ig domain of contactin-1

 Score = 67.3 bits (164), Expect = 9e-14
 Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 11/104 (10%)

Query: 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
           GP F +QP D ++   + S    ++++C A   P P Y+W K +   D         L++
Sbjct: 1   GPVFEEQPIDTIY--PEESTEGKVSVNCRARANPFPIYKWRKNNLDID---------LTN 49

Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAF 292
            R+++ GGNL+IN+P + +D G Y C  SN +G + S    L+F
Sbjct: 50  DRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATLSF 93

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 93

>gnl|CDD|143257 cd05849, Ig1_Contactin-1, First Ig domain of contactin-1

 Score = 67.3 bits (164), Expect = 9e-14
 Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 11/104 (10%)

Query: 462 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 521
           GP F +QP D ++   + S    ++++C A   P P Y+W K +   D         L++
Sbjct: 1   GPVFEEQPIDTIY--PEESTEGKVSVNCRARANPFPIYKWRKNNLDID---------LTN 49

Query: 522 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAF 565
            R+++ GGNL+IN+P + +D G Y C  SN +G + S    L+F
Sbjct: 50  DRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATLSF 93

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 93

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 66.5 bits (163), Expect = 1e-13
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 4/78 (5%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYI 740
           + G+  R  C   G P P+ +W + G PL  +  F    E     LTI NV+ +D+G+Y 
Sbjct: 13  QEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTISNVQPDDEGKYT 72

Query: 741 CRASNDRSALESSVTISI 758
           C A+N     E+S  +++
Sbjct: 73  CVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 66.4 bits (162), Expect = 1e-13
 Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 5/79 (6%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRG-SPLPRNAYF----ENFNRILTIPNVKVEDQGEY 739
           K G+ V L C A G P P   W ++G   L  +  F          LTI NV  ED G Y
Sbjct: 7   KEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTY 66

Query: 740 ICRASNDRSALESSVTISI 758
            C A+N   +  S  T+++
Sbjct: 67  TCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 66.4 bits (162), Expect = 1e-13
 Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 5/79 (6%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRG-SPLPRNAYF----ENFNRILTIPNVKVEDQGEY 739
           K G+ V L C A G P P   W ++G   L  +  F          LTI NV  ED G Y
Sbjct: 7   KEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTY 66

Query: 740 ICRASNDRSALESSVTISI 758
            C A+N   +  S  T+++
Sbjct: 67  TCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|143258 cd05850, Ig1_Contactin-2, First Ig domain of contactin-2

 Score = 65.0 bits (158), Expect = 6e-13
 Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 10/104 (9%)

Query: 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
           GP F +QP+ ++F   + S    +TL C A   P  +Y W        ++    I    +
Sbjct: 1   GPVFEEQPSSLLF--PEGSPEEKVTLGCRARASPPATYRW--------KMNGTEIKFAPE 50

Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAF 292
            R+TL  GNL+IN+P++  D GSY C A N+ G+++S    L F
Sbjct: 51  SRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVVSREANLRF 94

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing chick retina, corresponding to the period of formation and maturation of AC processes. Length = 94

>gnl|CDD|143258 cd05850, Ig1_Contactin-2, First Ig domain of contactin-2

 Score = 65.0 bits (158), Expect = 6e-13
 Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 10/104 (9%)

Query: 462 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 521
           GP F +QP+ ++F   + S    +TL C A   P  +Y W        ++    I    +
Sbjct: 1   GPVFEEQPSSLLF--PEGSPEEKVTLGCRARASPPATYRW--------KMNGTEIKFAPE 50

Query: 522 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAF 565
            R+TL  GNL+IN+P++  D GSY C A N+ G+++S    L F
Sbjct: 51  SRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVVSREANLRF 94

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing chick retina, corresponding to the period of formation and maturation of AC processes. Length = 94

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 62.1 bits (150), Expect = 3e-12
 Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 8/74 (10%)

Query: 690 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI--------LTIPNVKVEDQGEYIC 741
           V L C+A G P P+  W + G PLP +      +          LTI NV +ED G Y C
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Query: 742 RASNDRSALESSVT 755
            ASN    + +SVT
Sbjct: 61  VASNSAGTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|214480 smart00034, CLECT, C-type lectin (CTL) or carbohydrate-recognition domain (CRD)

 Score = 63.4 bits (154), Expect = 4e-12
 Identities = 34/131 (25%), Positives = 48/131 (36%), Gaps = 8/131 (6%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
           CP  W+ Y   CY+F     KT  DA+  C+SL   LA+++   E+ F+   L       
Sbjct: 1   CPSGWISYGGKCYKFSTEK-KTWEDAQAFCQSLGGHLASIHSEAENDFVASLLKNSGSSD 59

Query: 89  RKWYFGGT-QQSPNLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERV 147
             W  G +   S   W   DG+       +       N          S S  +W     
Sbjct: 60  YYW-IGLSDPDSNGSWQWSDGSGPV--SYSNWAPGEPNNSSGDCVV-LSTSGGKWNDVSC 115

Query: 148 TGMEPLLFICE 158
           T    L F+CE
Sbjct: 116 T--SKLPFVCE 124

Many of these domains function as calcium-dependent carbohydrate binding modules. Length = 124

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 60.6 bits (147), Expect = 2e-11
 Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 2/74 (2%)

Query: 674 NNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKV 733
             FPK        G  V LEC A G PVP   W +    +P +A       +L IPN++ 
Sbjct: 5   VVFPKDTYAL--KGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQF 62

Query: 734 EDQGEYICRASNDR 747
           ED+G Y C A N +
Sbjct: 63  EDEGTYECEAENIK 76

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143231 cd05754, Ig3_Perlecan_like, Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

 Score = 60.3 bits (146), Expect = 2e-11
 Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 3/74 (4%)

Query: 685 KAGDKVRLECVAFGY-PVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRA 743
           + G  V   C A    P  +  WTR G  LP  A   +FN ILTI NV++ D G Y+C  
Sbjct: 14  RPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRAM--DFNGILTIRNVQLSDAGTYVCTG 71

Query: 744 SNDRSALESSVTIS 757
           SN     E++ T+ 
Sbjct: 72  SNMLDTDEATATLY 85

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. Length = 85

>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 59.2 bits (143), Expect = 3e-11
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 690 VRLECVAFGYPVPSYNWTRRGSPLPRN-AYFENFNRILTIPNVKVEDQGEYICRASNDRS 748
           + LEC+A G P P  +W R   PL  N     N N+ L + NV   D GEY+C A N   
Sbjct: 1   LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEG 60

Query: 749 ALESSVTISIQ 759
           +     T++++
Sbjct: 61  SARHHYTVTVE 71

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71

>gnl|CDD|153063 cd03593, CLECT_NK_receptors_like, C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 31/138 (22%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL----FW- 83
           CP+ W+ Y + CY F     KT N++K  C S +S L  ++D +E  F+  Q+    +W 
Sbjct: 1   CPKDWICYGNKCYYFSMEK-KTWNESKEACSSKNSSLLKIDDEEELEFLQSQIGSSSYWI 59

Query: 84  ---QDPQRRKWYFGGTQQSPNLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLK 140
              ++   + W           W   DG+ LN L          + +    AY     L 
Sbjct: 60  GLSREKSEKPW----------KW--IDGSPLNNLF-----NIRGSTKSGNCAY-----LS 97

Query: 141 RWGFERVTGMEPLLFICE 158
             G           +ICE
Sbjct: 98  STGIYSEDCSTKKRWICE 115

CLECT_NK_receptors_like: C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs), including proteins similar to oxidized low density lipoprotein (OxLDL) receptor (LOX-1), CD94, CD69, NKG2-A and -D, osteoclast inhibitory lectin (OCIL), dendritic cell-associated C-type lectin-1 (dectin-1), human myeloid inhibitory C-type lectin-like receptor (MICL), mast cell-associated functional antigen (MAFA), killer cell lectin-like receptors: subfamily F, member 1 (KLRF1) and subfamily B, member 1 (KLRB1), and lys49 receptors. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. NKRs are variously associated with activation or inhibition of natural killer (NK) cells. Activating NKRs stimulate cytolysis by NK cells of virally infected or transformed cells; inhibitory NKRs block cytolysis upon recognition of markers of healthy self cells. Most Lys49 receptors are inhibitory; some are stimulatory. OCIL inhibits NK cell function via binding to the receptor NKRP1D. Murine OCIL in addition to inhibiting NK cell function inhibits osteoclast differentiation. MAFA clusters with the type I Fc epsilon receptor (FcepsilonRI) and inhibits the mast cells secretory response to FcepsilonRI stimulus. CD72 is a negative regulator of B cell receptor signaling. NKG2D is an activating receptor for stress-induced antigens; human NKG2D ligands include the stress induced MHC-I homologs, MICA, MICB, and ULBP family of glycoproteins Several NKRs have a carbohydrate-binding capacity which is not mediated through calcium ions (e.g. OCIL binds a range of high molecular weight sulfated glycosaminoglycans including dextran sulfate, fucoidan, and gamma-carrageenan sugars). Dectin-1 binds fungal beta-glucans and in involved in the innate immune responses to fungal pathogens. MAFA binds saccharides having terminal alpha-D mannose residues in a calcium-dependent manner. LOX-1 is the major receptor for OxLDL in endothelial cells and thought to play a role in the pathology of atherosclerosis. Some NKRs exist as homodimers (e.g.Lys49, NKG2D, CD69, LOX-1) and some as heterodimers (e.g. CD94/NKG2A). Dectin-1 can function as a monomer in vitro. Length = 116

>gnl|CDD|153057 cd00037, CLECT, C-type lectin (CTL)/C-type lectin-like (CTLD) domain

 Score = 55.3 bits (133), Expect = 3e-09
 Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 7/121 (5%)

Query: 39  SCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGT-Q 97
           SCY+F      T  +A+  C+SL   LA+++  +E+ F+   L  +       + G    
Sbjct: 1   SCYKFSTEK-LTWEEAQEYCRSLGGHLASIHSEEENDFLASLL--KKSSSSDVWIGLNDL 57

Query: 98  QSPNLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFIC 157
            S   W   DG+ L +       EP      D +  S S       +  V+    L FIC
Sbjct: 58  SSEGTWKWSDGSPLVDYTNWAPGEPNPGGSEDCVVLSSSSD---GKWNDVSCSSKLPFIC 114

Query: 158 E 158
           E
Sbjct: 115 E 115

CLECT: C-type lectin (CTL)/C-type lectin-like (CTLD) domain; protein domains homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. This group is chiefly comprised of eukaryotic CTLDs, but contains some, as yet functionally uncharacterized, bacterial CTLDs. Many CTLDs are calcium-dependent carbohydrate binding modules; other CTLDs bind protein ligands, lipids, and inorganic surfaces, including CaCO3 and ice. Animal C-type lectins are involved in such functions as extracellular matrix organization, endocytosis, complement activation, pathogen recognition, and cell-cell interactions. For example: mannose-binding lectin and lung surfactant proteins A and D bind carbohydrates on surfaces (e.g. pathogens, allergens, necrotic, and apoptotic cells) and mediate functions associated with killing and phagocytosis; P (platlet)-, E (endothelial)-, and L (leukocyte)- selectins (sels) mediate the initial attachment, tethering, and rolling of lymphocytes on inflamed vascular walls enabling subsequent lymphocyte adhesion and transmigration. CTLDs may bind a variety of carbohydrate ligands including mannose, N-acetylglucosamine, galactose, N-acetylgalactosamine, and fucose. Several CTLDs bind to protein ligands, and only some of these binding interactions are Ca2+-dependent; including the CTLDs of Coagulation Factors IX/X (IX/X) and Von Willebrand Factor (VWF) binding proteins, and natural killer cell receptors. C-type lectins, such as lithostathine, and some type II antifreeze glycoproteins function in a Ca2+-independent manner to bind inorganic surfaces. Many proteins in this group contain a single CTLD; these CTLDs associate with each other through several different surfaces to form dimers, trimers, or tetramers, from which ligand-binding sites project in different orientations. Various vertebrate type 1 transmembrane proteins including macrophage mannose receptor, endo180, phospholipase A2 receptor, and dendritic and epithelial cell receptor (DEC205) have extracellular domains containing 8 or more CTLDs; these CTLDs remain in the parent model. In some members (IX/X and VWF binding proteins), a loop extends to the adjoining domain to form a loop-swapped dimer. A similar conformation is seen in the macrophage mannose receptor CRD4's putative non-sugar bound form of the domain in the acid environment of the endosome. Lineage specific expansions of CTLDs have occurred in several animal lineages including Drosophila melanogaster and Caenorhabditis elegans; these CTLDs also remain in the parent model. Length = 116

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 53.8 bits (130), Expect = 4e-09
 Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 20/97 (20%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           P F ++P DV     +         +C   G P+P+  WFK+               S  
Sbjct: 1   PKFTQKPKDVEVQEGE-----SARFTCTVTGDPDPTVSWFKDG----------QPLRSSD 45

Query: 250 RFTL--SGGN--LIINDPRQVEDRGSYHCKASNKFGS 282
           RF +   GG   L I++  Q +D G Y C A+N  G 
Sbjct: 46  RFKVTYEGGTYTLTISNV-QPDDEGKYTCVATNSAGE 81

Length = 90

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 53.8 bits (130), Expect = 4e-09
 Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 20/97 (20%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
           P F ++P DV     +         +C   G P+P+  WFK+               S  
Sbjct: 1   PKFTQKPKDVEVQEGE-----SARFTCTVTGDPDPTVSWFKDG----------QPLRSSD 45

Query: 523 RFTL--SGGN--LIINDPRQVEDRGSYHCKASNKFGS 555
           RF +   GG   L I++  Q +D G Y C A+N  G 
Sbjct: 46  RFKVTYEGGTYTLTISNV-QPDDEGKYTCVATNSAGE 81

Length = 90

>gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1

 Score = 53.1 bits (127), Expect = 7e-09
 Identities = 24/61 (39%), Positives = 31/61 (50%)

Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASND 746
           G  V LEC A G PVP   W +   P+P  A       +L I N++ ED+G Y C A N 
Sbjct: 16  GQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENI 75

Query: 747 R 747
           +
Sbjct: 76  K 76

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 52.4 bits (126), Expect = 8e-09
 Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 13/73 (17%)

Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK-RFTLSGGNLIINDPRQVED 268
             +TL+C A G P P+  W K+             PL +  RF  SG  L I     +ED
Sbjct: 3   QSVTLTCPAEGNPVPNITWLKDG-----------KPLPESNRFVASGSTLTIKS-VSLED 50

Query: 269 RGSYHCKASNKFG 281
            G Y C A N  G
Sbjct: 51  SGLYTCVAENSAG 63

Length = 63

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 52.4 bits (126), Expect = 8e-09
 Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 13/73 (17%)

Query: 483 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK-RFTLSGGNLIINDPRQVED 541
             +TL+C A G P P+  W K+             PL +  RF  SG  L I     +ED
Sbjct: 3   QSVTLTCPAEGNPVPNITWLKDG-----------KPLPESNRFVASGSTLTIKS-VSLED 50

Query: 542 RGSYHCKASNKFG 554
            G Y C A N  G
Sbjct: 51  SGLYTCVAENSAG 63

Length = 63

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 52.1 bits (124), Expect = 1e-08
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 271
           +TL+C A G P P+  W K    +    + L    S +  +     L I++   +ED G+
Sbjct: 1   VTLTCLASGPPPPTITWLKNG--KPLPSSVLTRVRSSRGTSSGSSTLTISNV-TLEDSGT 57

Query: 272 YHCKASNKFGSI 283
           Y C ASN  G++
Sbjct: 58  YTCVASNSAGTV 69

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 52.1 bits (124), Expect = 1e-08
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 485 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 544
           +TL+C A G P P+  W K    +    + L    S +  +     L I++   +ED G+
Sbjct: 1   VTLTCLASGPPPPTITWLKNG--KPLPSSVLTRVRSSRGTSSGSSTLTISNV-TLEDSGT 57

Query: 545 YHCKASNKFGSI 556
           Y C ASN  G++
Sbjct: 58  YTCVASNSAGTV 69

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 7/74 (9%)

Query: 686 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASN 745
            G+ V L C A G P P+Y W + G PL       + N     PNV  ED G Y C ASN
Sbjct: 13  EGEDVTLTCSAPGNPPPNYTWYKDGVPLS-----SSQNGFF-TPNVSAEDSGTYTCVASN 66

Query: 746 DR-SALESSVTISI 758
                  + VT+++
Sbjct: 67  GGGGKTSNPVTLTV 80

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 51.8 bits (124), Expect = 2e-08
 Identities = 23/72 (31%), Positives = 33/72 (45%)

Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASND 746
           G  +R EC A G P P+Y W + G PL      E     L I  + + D G Y C A N 
Sbjct: 14  GSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENK 73

Query: 747 RSALESSVTISI 758
              + +S  +++
Sbjct: 74  HGTIYASAELAV 85

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 686 AGDKVRLECVAFGYPVPSYNWTRRGSPL-----PRNAYFENFNRILTIPNVKVEDQGEYI 740
           AG  VRL+C A G P P+  W + G P                  L + +V   D G+Y 
Sbjct: 8   AGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYT 67

Query: 741 CRASN 745
           C   N
Sbjct: 68  CIVEN 72

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 50.1 bits (119), Expect = 7e-08
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 679 TFPEAPKAGDKVRLECVAFGYPVP-SYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQG 737
           +   +  +G  V L C A G P P + +W R GS    +    +    LT+ +V  ED G
Sbjct: 7   SPSPSVTSGGGVTLTCSAEGGPPPPTISWYRNGSISGGSGGLGSSGSTLTLSSVTSEDSG 66

Query: 738 EYICRASN 745
            Y C ASN
Sbjct: 67  TYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 49.8 bits (119), Expect = 1e-07
 Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 14/80 (17%)

Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGN----LIINDPRQV 266
            +TLSC A G P P   W+K+                  RF++S       L I++    
Sbjct: 11  SVTLSCEASGSPPPEVTWYKQG---------GKLLAESGRFSVSRSGSTSTLTISNV-TP 60

Query: 267 EDRGSYHCKASNKFGSIISE 286
           ED G+Y C A+N  GS  S 
Sbjct: 61  EDSGTYTCAATNSSGSASSG 80

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 49.8 bits (119), Expect = 1e-07
 Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 14/80 (17%)

Query: 484 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGN----LIINDPRQV 539
            +TLSC A G P P   W+K+                  RF++S       L I++    
Sbjct: 11  SVTLSCEASGSPPPEVTWYKQG---------GKLLAESGRFSVSRSGSTSTLTISNV-TP 60

Query: 540 EDRGSYHCKASNKFGSIISE 559
           ED G+Y C A+N  GS  S 
Sbjct: 61  EDSGTYTCAATNSSGSASSG 80

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 49.8 bits (119), Expect = 1e-07
 Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 14/80 (17%)

Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGN----LIINDPRQV 266
            +TLSC A G P P   W+K+                  RF++S       L I++    
Sbjct: 11  SVTLSCEASGSPPPEVTWYKQG---------GKLLAESGRFSVSRSGSTSTLTISNV-TP 60

Query: 267 EDRGSYHCKASNKFGSIISE 286
           ED G+Y C A+N  GS  S 
Sbjct: 61  EDSGTYTCAATNSSGSASSG 80

Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 49.8 bits (119), Expect = 1e-07
 Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 14/80 (17%)

Query: 484 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGN----LIINDPRQV 539
            +TLSC A G P P   W+K+                  RF++S       L I++    
Sbjct: 11  SVTLSCEASGSPPPEVTWYKQG---------GKLLAESGRFSVSRSGSTSTLTISNV-TP 60

Query: 540 EDRGSYHCKASNKFGSIISE 559
           ED G+Y C A+N  GS  S 
Sbjct: 61  EDSGTYTCAATNSSGSASSG 80

Length = 85

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNR--ILTIPNVKVEDQGEYICRAS 744
           G  VRL+CVA G P P   W +   PL      E+  +   L++ N+K ED G+Y C  S
Sbjct: 9   GSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVS 68

Query: 745 N 745
           N
Sbjct: 69  N 69

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI---LTIPNVKVEDQGEYICRA 743
           G  V L C A G+P P+  WT+ G P+       +FN     +TI +V   D+ EY C A
Sbjct: 18  GQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIA 77

Query: 744 SNDRSALESSVTISIQAE 761
            N     E+ + + + A+
Sbjct: 78  ENKAGEQEAEIHLKVFAK 95

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|153060 cd03590, CLECT_DC-SIGN_like, C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFW 83
          CP +W  ++ SCY F  +  K+  +++  C+ + + L  +N  +E  FI   L  
Sbjct: 1  CPTNWKSFQSSCY-FFSTEKKSWEESRQFCEDMGAHLVIINSQEEQEFISKILSG 54

CLECT_DC-SIGN_like: C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR). This group also contains proteins similar to hepatic asialoglycoprotein receptor (ASGP-R) and langerin in human. These proteins are type II membrane proteins with a CTLD ectodomain. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. DC-SIGN is thought to mediate the initial contact between dendritic cells and resting T cells, and may also mediate the rolling of DCs on epithelium. DC-SIGN and DC-SIGNR bind to oligosaccharides present on human tissues, as well as, on pathogens including parasites, bacteria, and viruses. DC-SIGN and DC-SIGNR bind to HIV enhancing viral infection of T cells. DC-SIGN and DC-SIGNR are homotetrameric, and contain four CTLDs stabilized by a coiled coil of alpha helices. The hepatic ASGP-R is an endocytic recycling receptor which binds and internalizes desialylated glycoproteins having a terminal galactose or N-acetylgalactosamine residues on their N-linked carbohydrate chains, via the clathrin-coated pit mediated endocytic pathway, and delivers them to lysosomes for degradation. It has been proposed that glycoproteins bearing terminal Sia (sialic acid) alpha2, 6GalNAc and Sia alpha2, 6Gal are endogenous ligands for ASGP-R and that ASGP-R participates in regulating the relative concentration of serum glycoproteins bearing alpha 2,6-linked Sia. The human ASGP-R is a hetero-oligomer composed of two subunits, both of which are found within this group. Langerin is expressed in a subset of dendritic leukocytes, the Langerhans cells (LC). Langerin induces the formation of Birbeck Granules (BGs) and associates with these BGs following internalization. Langerin binds, in a calcium-dependent manner, to glyco-conjugates containing mannose and related sugars mediating their uptake and degradation. Langerin molecules oligomerize as trimers with three CTLDs held together by a coiled-coil of alpha helices. Length = 126

>gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 26/65 (40%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYICR 742
           G+ V   CVA G P P  NW      +P +A      E     LTI +VK  DQG Y C 
Sbjct: 1   GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCE 60

Query: 743 ASNDR 747
           A N R
Sbjct: 61  AINTR 65

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. Length = 78

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 47.9 bits (114), Expect = 2e-07
 Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 5/62 (8%)

Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQGEYIC 741
           G  V L C   G P     W + G  L  +           +  LTI NV  ED G Y C
Sbjct: 1   GSSVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTC 60

Query: 742 RA 743
             
Sbjct: 61  VV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 47.8 bits (114), Expect = 3e-07
 Identities = 19/47 (40%), Positives = 24/47 (51%)

Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKM 460
           G  V L C A G PVP+  W + G PLP +  F      LTI +V +
Sbjct: 2   GQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFVASGSTLTIKSVSL 48

Length = 63

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 419 LECVAFGYPVPSYNWTRRGSPLPRN-AYFENFNRILTIPNV 458
           LEC+A G P P  +W + G  LP +   FENFN+ L I NV
Sbjct: 3   LECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNV 43

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 17/80 (21%)

Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
           D+TL+C A G P P+Y W+K+           +    +  FT +            ED G
Sbjct: 16  DVTLTCSAPGNPPPNYTWYKDG--------VPLSSSQNGFFTPN---------VSAEDSG 58

Query: 271 SYHCKASNKFGSIISESVQL 290
           +Y C ASN  G   S  V L
Sbjct: 59  TYTCVASNGGGGKTSNPVTL 78

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 17/80 (21%)

Query: 484 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 543
           D+TL+C A G P P+Y W+K+           +    +  FT +            ED G
Sbjct: 16  DVTLTCSAPGNPPPNYTWYKDG--------VPLSSSQNGFFTPN---------VSAEDSG 58

Query: 544 SYHCKASNKFGSIISESVQL 563
           +Y C ASN  G   S  V L
Sbjct: 59  TYTCVASNGGGGKTSNPVTL 78

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 47.0 bits (112), Expect = 7e-07
 Identities = 21/69 (30%), Positives = 34/69 (49%)

Query: 690 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSA 749
           V  +C   G PVP+  W +    LP+       ++ L I NV   D+G Y C A N    
Sbjct: 1   VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGK 60

Query: 750 LESSVTISI 758
           +E+S ++++
Sbjct: 61  IEASASLTV 69

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 47.4 bits (113), Expect = 7e-07
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 9/71 (12%)

Query: 220 GYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNK 279
           G+P P+  W K+           ++  +++   +  GNL+I + R+  D G+Y C A+N 
Sbjct: 23  GHPEPTVSWRKDG--------QPLNLDNERVRIVDDGNLLIAEARK-SDEGTYKCVATNM 73

Query: 280 FGSIISESVQL 290
            G   S + +L
Sbjct: 74  VGERESAAARL 84

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 47.4 bits (113), Expect = 7e-07
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 9/71 (12%)

Query: 493 GYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNK 552
           G+P P+  W K+           ++  +++   +  GNL+I + R+  D G+Y C A+N 
Sbjct: 23  GHPEPTVSWRKDG--------QPLNLDNERVRIVDDGNLLIAEARK-SDEGTYKCVATNM 73

Query: 553 FGSIISESVQL 563
            G   S + +L
Sbjct: 74  VGERESAAARL 84

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 47.2 bits (112), Expect = 8e-07
 Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 13/78 (16%)

Query: 207 SILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL-SDKRFTLSGGNLIINDPRQ 265
            I + +   C A G P P+Y W K              PL S+ R  +  G+L I     
Sbjct: 12  DIGSSLRWECKASGNPRPAYRWLKNG-----------QPLASENRIEVEAGDLRITK-LS 59

Query: 266 VEDRGSYHCKASNKFGSI 283
           + D G Y C A NK G+I
Sbjct: 60  LSDSGMYQCVAENKHGTI 77

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 47.2 bits (112), Expect = 8e-07
 Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 13/78 (16%)

Query: 480 SILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL-SDKRFTLSGGNLIINDPRQ 538
            I + +   C A G P P+Y W K              PL S+ R  +  G+L I     
Sbjct: 12  DIGSSLRWECKASGNPRPAYRWLKNG-----------QPLASENRIEVEAGDLRITK-LS 59

Query: 539 VEDRGSYHCKASNKFGSI 556
           + D G Y C A NK G+I
Sbjct: 60  LSDSGMYQCVAENKHGTI 77

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 47.9 bits (114), Expect = 8e-07
 Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 13/105 (12%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           P  ++ P+D++  +SK       TL+C A G P P+ +W K       L  +  DP S  
Sbjct: 2   PRIVEHPSDLI--VSKGD---PATLNCKAEGRPTPTIQWLKNG---QPLETDKDDPRS-H 52

Query: 250 RFTLSGGNL----IINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
           R  L  G+L    +++  +   D G Y C A N  G  +S +  L
Sbjct: 53  RIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSRNASL 97

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 47.9 bits (114), Expect = 8e-07
 Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 13/105 (12%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
           P  ++ P+D++  +SK       TL+C A G P P+ +W K       L  +  DP S  
Sbjct: 2   PRIVEHPSDLI--VSKGD---PATLNCKAEGRPTPTIQWLKNG---QPLETDKDDPRS-H 52

Query: 523 RFTLSGGNL----IINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
           R  L  G+L    +++  +   D G Y C A N  G  +S +  L
Sbjct: 53  RIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSRNASL 97

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 46.5 bits (110), Expect = 1e-06
 Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNR-ILTIPNVKVEDQGEYICRASN 745
           G  V   C A GYP P   WT+ GS L  +      +   L I  V + DQG+Y C+A N
Sbjct: 2   GQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVN 61

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 17/106 (16%)

Query: 191 YFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKR 250
           +F+ +P+D+V       +LN     C A G P P  EW K+D V   LV++      ++R
Sbjct: 1   WFLSEPSDIVAVRGGPVVLN-----CSAEGEPPPKIEW-KKDGVLLNLVSD------ERR 48

Query: 251 FTLSGGNLIINDPRQVE----DRGSYHCKASNK-FGSIISESVQLA 291
             L  G+L+I      +    D G Y C A N   GSI+S + +L 
Sbjct: 49  QQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVSRTARLT 94

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 95

>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 17/106 (16%)

Query: 464 YFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKR 523
           +F+ +P+D+V       +LN     C A G P P  EW K+D V   LV++      ++R
Sbjct: 1   WFLSEPSDIVAVRGGPVVLN-----CSAEGEPPPKIEW-KKDGVLLNLVSD------ERR 48

Query: 524 FTLSGGNLIINDPRQVE----DRGSYHCKASNK-FGSIISESVQLA 564
             L  G+L+I      +    D G Y C A N   GSI+S + +L 
Sbjct: 49  QQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVSRTARLT 94

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 95

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 4/66 (6%)

Query: 401 NNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKM 460
             FPK        G  V LEC A G PVP   W +    +P +A       +L IPN++ 
Sbjct: 5   VVFPKDTYAL--KGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQF 62

Query: 461 R--GPY 464
              G Y
Sbjct: 63  EDEGTY 68

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143219 cd05742, Ig1_VEGFR_like, First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

 Score = 45.1 bits (107), Expect = 5e-06
 Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 11/83 (13%)

Query: 687 GDKVRLECVAFG--YPVPSYNWT------RRGSPLPRNAYFENFNR---ILTIPNVKVED 735
           G+ + L C           + WT       RG  +               LTIPN  ++D
Sbjct: 1   GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKD 60

Query: 736 QGEYICRASNDRSALESSVTISI 758
            G Y C AS+     + S  ++I
Sbjct: 61  SGTYTCAASSGTMDQKESTKVNI 83

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. VEGFR-3 has been shown to be involved in tumor angiogenesis and growth. This group also contains alpha-type platelet-derived growth factor receptor precursor (PDGFR)-alpha (CD140a), and PDGFR-beta (CD140b). PDGFRs alpha and beta have an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion that has protein tyrosine kinase activity. Length = 84

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 44.2 bits (104), Expect = 7e-06
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 5/73 (6%)

Query: 691 RLECVAFGYPVPSYNWTRR-GSPLP----RNAYFENFNRILTIPNVKVEDQGEYICRASN 745
           RLEC A G+P P   W +  G+  P    R  +    + +  I +VK+ED G Y C A N
Sbjct: 2   RLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQN 61

Query: 746 DRSALESSVTISI 758
              ++ ++ T+++
Sbjct: 62  TAGSISANATLTV 74

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 44.6 bits (106), Expect = 8e-06
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKMR--GPYF 465
           + G+  R  C   G P P+ +W + G PL  +  F    E     LTI NV+    G Y 
Sbjct: 13  QEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTISNVQPDDEGKYT 72

Query: 466 IK 467
             
Sbjct: 73  CV 74

Length = 90

>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 16/79 (20%)

Query: 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKR--FTLSGG--NLIINDPRQVE 267
           +TL C+  G+P P+Y+WF++             PLSD +  +++S     L +      +
Sbjct: 1   VTLRCHIDGHPRPTYQWFRDG-----------TPLSDGQGNYSVSSKERTLTLR-SAGPD 48

Query: 268 DRGSYHCKASNKFGSIISE 286
           D G Y+C A N FGS+ S 
Sbjct: 49  DSGLYYCCAHNAFGSVCSS 67

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in several cancers, including melanoma and colon cancer lines. Length = 77

>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 16/79 (20%)

Query: 485 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKR--FTLSGG--NLIINDPRQVE 540
           +TL C+  G+P P+Y+WF++             PLSD +  +++S     L +      +
Sbjct: 1   VTLRCHIDGHPRPTYQWFRDG-----------TPLSDGQGNYSVSSKERTLTLR-SAGPD 48

Query: 541 DRGSYHCKASNKFGSIISE 559
           D G Y+C A N FGS+ S 
Sbjct: 49  DSGLYYCCAHNAFGSVCSS 67

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in several cancers, including melanoma and colon cancer lines. Length = 77

>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 5/77 (6%)

Query: 690 VRLECVAFGYPVPSYNWTRRGSPLP---RNAYFENFNRILTIPNVKVEDQGEYICRASND 746
           V L C   G+P P+Y W R G+PL     N    +  R LT+ +   +D G Y C A N 
Sbjct: 1   VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNA 60

Query: 747 RSALESS--VTISIQAE 761
             ++ SS   T+SI  E
Sbjct: 61  FGSVCSSQNFTLSIIDE 77

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in several cancers, including melanoma and colon cancer lines. Length = 77

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 10/76 (13%)

Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDP--LSDKRFTLSGGNLIINDPRQVE 267
           + + L C A G P P+  W K+   +     + I    +  K++TL   +++        
Sbjct: 10  STVRLKCPASGNPRPTITWLKDG--KPFKKEHRIGGYKVRKKKWTLILESVV------PS 61

Query: 268 DRGSYHCKASNKFGSI 283
           D G Y C   NK+GSI
Sbjct: 62  DSGKYTCIVENKYGSI 77

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 10/76 (13%)

Query: 483 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDP--LSDKRFTLSGGNLIINDPRQVE 540
           + + L C A G P P+  W K+   +     + I    +  K++TL   +++        
Sbjct: 10  STVRLKCPASGNPRPTITWLKDG--KPFKKEHRIGGYKVRKKKWTLILESVV------PS 61

Query: 541 DRGSYHCKASNKFGSI 556
           D G Y C   NK+GSI
Sbjct: 62  DSGKYTCIVENKYGSI 77

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143210 cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 13/84 (15%)

Query: 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS--GGNLII---NDPRQV 266
           I + C A G P P++ W +             DP  D R T+    G L+I   N  R  
Sbjct: 1   IVIKCEAKGNPPPTFSWTRN--------GTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAE 52

Query: 267 EDRGSYHCKASNKFGSIISESVQL 290
           +  G Y C ASN+ G+ IS  + L
Sbjct: 53  DYEGEYQCYASNELGTAISNEIHL 76

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. Length = 77

>gnl|CDD|143210 cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 13/84 (15%)

Query: 485 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS--GGNLII---NDPRQV 539
           I + C A G P P++ W +             DP  D R T+    G L+I   N  R  
Sbjct: 1   IVIKCEAKGNPPPTFSWTRN--------GTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAE 52

Query: 540 EDRGSYHCKASNKFGSIISESVQL 563
           +  G Y C ASN+ G+ IS  + L
Sbjct: 53  DYEGEYQCYASNELGTAISNEIHL 76

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. Length = 77

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 10/75 (13%)

Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS-DKRFTLSGGNLIINDPRQVEDR 269
              L C A G P P+  W        RL    I+ L  D R  + GG LI+++  Q  D 
Sbjct: 3   TGRLDCEAEGIPQPTITW--------RLNGVPIEELPPDPRRRVDGGTLILSN-VQPNDT 53

Query: 270 GSYHCKASNKFGSII 284
             Y C ASN  G ++
Sbjct: 54  AVYQCNASNVHGYLL 68

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 10/75 (13%)

Query: 484 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS-DKRFTLSGGNLIINDPRQVEDR 542
              L C A G P P+  W        RL    I+ L  D R  + GG LI+++  Q  D 
Sbjct: 3   TGRLDCEAEGIPQPTITW--------RLNGVPIEELPPDPRRRVDGGTLILSN-VQPNDT 53

Query: 543 GSYHCKASNKFGSII 557
             Y C ASN  G ++
Sbjct: 54  AVYQCNASNVHGYLL 68

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 11/71 (15%)

Query: 213 TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL--SGGNLIINDPRQVEDRG 270
           +L C+A G P P   W K            I P   K+ TL  +G  L I++ R  ED G
Sbjct: 2   SLRCHAEGIPLPRLTWLKNGMD--------ITPKLSKQLTLIANGSELHISNVR-YEDTG 52

Query: 271 SYHCKASNKFG 281
           +Y C A N+ G
Sbjct: 53  AYTCIAKNEAG 63

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 11/71 (15%)

Query: 486 TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL--SGGNLIINDPRQVEDRG 543
           +L C+A G P P   W K            I P   K+ TL  +G  L I++ R  ED G
Sbjct: 2   SLRCHAEGIPLPRLTWLKNGMD--------ITPKLSKQLTLIANGSELHISNVR-YEDTG 52

Query: 544 SYHCKASNKFG 554
           +Y C A N+ G
Sbjct: 53  AYTCIAKNEAG 63

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 9/78 (11%)

Query: 206 RSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQ 265
           R + + + L C A G P P   W K+      L    I     K++TLS  NL      +
Sbjct: 6   RPVGSSVRLKCVASGNPRPDITWLKD---NKPLTPTEIGESRKKKWTLSLKNL------K 56

Query: 266 VEDRGSYHCKASNKFGSI 283
            ED G Y C  SN+ G I
Sbjct: 57  PEDSGKYTCHVSNRAGEI 74

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 9/78 (11%)

Query: 479 RSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQ 538
           R + + + L C A G P P   W K+      L    I     K++TLS  NL      +
Sbjct: 6   RPVGSSVRLKCVASGNPRPDITWLKD---NKPLTPTEIGESRKKKWTLSLKNL------K 56

Query: 539 VEDRGSYHCKASNKFGSI 556
            ED G Y C  SN+ G I
Sbjct: 57  PEDSGKYTCHVSNRAGEI 74

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENF--NRILTIPNVKVEDQGEYICRAS 744
           G  V +EC     P P+ +W  +G+ L  N+       +  L I NV   D+G+Y C A 
Sbjct: 1   GGDVIIECKPKAAPKPTISW-SKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAE 59

Query: 745 NDRSALESSVTISI 758
           N      S+ ++S+
Sbjct: 60  NFFGKANSTGSLSV 73

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 315 MFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQS-- 372
           + C PP  +P     W +D  P    +++RV +  DG L  +   + D G Y C   +  
Sbjct: 16  LECSPPRGHPEPTVSWRKDGQP-LNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMV 74

Query: 373 --KVSDTGR 379
             + S   R
Sbjct: 75  GERESAAAR 83

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 588 MFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQS-- 645
           + C PP  +P     W +D  P    +++RV +  DG L  +   + D G Y C   +  
Sbjct: 16  LECSPPRGHPEPTVSWRKDGQP-LNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMV 74

Query: 646 --KVSDTGR 652
             + S   R
Sbjct: 75  GERESAAAR 83

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143211 cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

 Score = 41.8 bits (98), Expect = 6e-05
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 10/83 (12%)

Query: 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANL--IDPLSDKRFTLSGGNLIINDPRQV--E 267
           +TL+C A GYP P+  W    + + R          L+ +   LS G+L+I   + V  E
Sbjct: 1   VTLNCSAEGYPPPTIVW---KHSKGRGHPQHTHTCCLAGRIQLLSNGSLLI---KHVLEE 54

Query: 268 DRGSYHCKASNKFGSIISESVQL 290
           D G Y CK SN  G+  S+S+ L
Sbjct: 55  DSGYYLCKVSNDVGADASKSMVL 77

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. Length = 79

>gnl|CDD|143211 cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

 Score = 41.8 bits (98), Expect = 6e-05
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 10/83 (12%)

Query: 485 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANL--IDPLSDKRFTLSGGNLIINDPRQV--E 540
           +TL+C A GYP P+  W    + + R          L+ +   LS G+L+I   + V  E
Sbjct: 1   VTLNCSAEGYPPPTIVW---KHSKGRGHPQHTHTCCLAGRIQLLSNGSLLI---KHVLEE 54

Query: 541 DRGSYHCKASNKFGSIISESVQL 563
           D G Y CK SN  G+  S+S+ L
Sbjct: 55  DSGYYLCKVSNDVGADASKSMVL 77

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. Length = 79

>gnl|CDD|143256 cd05848, Ig1_Contactin-5, First Ig domain of contactin-5

 Score = 41.8 bits (98), Expect = 8e-05
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 5/61 (8%)

Query: 689 KVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----NFNRILTIPNVKVEDQGEYICRAS 744
           KV L C A G PVP+Y W R G+ +   + +     + N I++ P+ +V+D G Y C A+
Sbjct: 21  KVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPS-EVKDSGRYQCLAT 79

Query: 745 N 745
           N
Sbjct: 80  N 80

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. Length = 94

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 7/61 (11%)

Query: 412 KAGDKVRLECVAFGYPVPSYNWTR-RGSPLPRNAYF----ENFNRILTIPNVKMR--GPY 464
           K G+ V L C A G P P   W +  G  L  +  F          LTI NV     G Y
Sbjct: 7   KEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTY 66

Query: 465 F 465
            
Sbjct: 67  T 67

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 7/61 (11%)

Query: 412 KAGDKVRLECVAFGYPVPSYNWTR-RGSPLPRNAYF----ENFNRILTIPNVKMR--GPY 464
           K G+ V L C A G P P   W +  G  L  +  F          LTI NV     G Y
Sbjct: 7   KEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTY 66

Query: 465 F 465
            
Sbjct: 67  T 67

Length = 85

>gnl|CDD|143211 cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 9/69 (13%)

Query: 690 VRLECVAFGYPVPSYNWTR-RGSPLPRNAYFENFN-RILTIPN-------VKVEDQGEYI 740
           V L C A GYP P+  W   +G   P++ +      RI  + N       V  ED G Y+
Sbjct: 1   VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYL 60

Query: 741 CRASNDRSA 749
           C+ SND  A
Sbjct: 61  CKVSNDVGA 69

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. Length = 79

>gnl|CDD|143217 cd05740, Ig_CEACAM_D4, Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 27/74 (36%), Positives = 31/74 (41%), Gaps = 2/74 (2%)

Query: 684 PKAGDKVRLECVAFGYPVPSYNWTRRGS-PLPRNAYFENFNRILTIPNVKVEDQGEYICR 742
           P+    V L C A G       W   GS  +P      N NR LT  NV   D G Y C 
Sbjct: 15  PEDNQPVTLTCEAEG-QATYIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCE 73

Query: 743 ASNDRSALESSVTI 756
           ASN+ S + S   I
Sbjct: 74  ASNEVSNMTSDPYI 87

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D4 Ig-like domain. Length = 91

>gnl|CDD|153059 cd03589, CLECT_CEL-1_like, C-type lectin-like domain (CTLD) of the type found in CEL-1 from Cucumaria echinata and Echinoidin from Anthocidaris crassispina

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 13/94 (13%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDS-----DLANVNDADEHGFIMYQLF- 82
           CP  W  +   CYRF      T  +A+L C+S         L +++  +E+ F+ Y LF 
Sbjct: 1   CPTFWTAFGGYCYRFF-GDRLTWEEAELRCRSFSIPGLIAHLVSIHSQEENDFV-YDLFE 58

Query: 83  ---WQDPQRRKWYFGGTQQ-SPNLWVNEDGTNLN 112
                D     W  G   + S   +   DG+ ++
Sbjct: 59  SSRGPDTPYGLW-IGLHDRTSEGPFEWTDGSPVD 91

CLECT_CEL-1_like: C-type lectin-like domain (CTLD) of the type found in CEL-1 from Cucumaria echinata and Echinoidin from Anthocidaris crassispina. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. The CEL-1 CTLD binds three calcium ions and has a high specificity for N-acteylgalactosamine (GalNAc). CEL-1 exhibits strong cytotoxicity which is inhibited by GalNAc. This protein may play a role as a toxin defending against predation. Echinoidin is found in the coelomic fluid of the sea urchin and is specific for GalBeta1-3GalNAc. Echinoidin has a cell adhesive activity towards human cancer cells which is not mediated through the CTLD. Both CEL-1 and Echinoidin are multimeric proteins comprised of multiple dimers linked by disulfide bonds. Length = 137

>gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 8/62 (12%)

Query: 692 LECVAFG-YPVPSYNWTRRGSPL-----PRNAYFENF--NRILTIPNVKVEDQGEYICRA 743
           L+C A   YP   + W + G  L     PRN    N   N  L I   K+ D GEY C  
Sbjct: 3   LKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVV 62

Query: 744 SN 745
            N
Sbjct: 63  EN 64

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. There are many NRG-1 isoforms, which arise from the alternative splicing of mRNA. Less is known of the functions of the other NRGs. NRG-2 and -3 are expressed predominantly in the nervous system. NRG-2 is expressed by motor neurons and terminal Schwann cells, and is concentrated near synaptic sites and may be a signal that regulates synaptic differentiation. NRG-4 has been shown to direct pancreatic islet cell development towards the delta-cell lineage. Length = 75

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSP---LPRNAYFENFNRILTIPNVKVEDQGEYICRA 743
           G+  RL+C A G P P+  W   G P   LP +         L + NV+  D   Y C A
Sbjct: 1   GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNA 60

Query: 744 SN 745
           SN
Sbjct: 61  SN 62

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143270 cd05862, Ig1_VEGFR, First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 12/79 (15%)

Query: 687 GDKVRLECVA---------FGYPVPSYNWTRRGS-PLPRNAYFE--NFNRILTIPNVKVE 734
           G+K+ L C A         F +  P     R  S    R +  E    +  LTI NV + 
Sbjct: 1   GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLS 60

Query: 735 DQGEYICRASNDRSALESS 753
           D G Y C AS+ +   ++S
Sbjct: 61  DLGRYTCTASSGQMIAKNS 79

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. VEGFR-3 has been shown to be involved in tumor angiogenesis and growth. Length = 86

>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 8/78 (10%)

Query: 213 TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSY 272
           T+ C A G P+P   WFK D++        +D  S+ R        +  +  +  D+G Y
Sbjct: 2   TMLCAASGNPDPEITWFK-DFLP-------VDTTSNGRIKQLRSGALQIENSEESDQGKY 53

Query: 273 HCKASNKFGSIISESVQL 290
            C A+N  G+  S    L
Sbjct: 54  ECVATNSAGTRYSAPANL 71

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74

>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 8/78 (10%)

Query: 486 TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSY 545
           T+ C A G P+P   WFK D++        +D  S+ R        +  +  +  D+G Y
Sbjct: 2   TMLCAASGNPDPEITWFK-DFLP-------VDTTSNGRIKQLRSGALQIENSEESDQGKY 53

Query: 546 HCKASNKFGSIISESVQL 563
            C A+N  G+  S    L
Sbjct: 54  ECVATNSAGTRYSAPANL 71

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74

>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 417 VRLECVAFGYPVPSYNWTRRGSPLPRN-AYFENFNRILTIPNV 458
           + LEC+A G P P  +W R   PL  N     N N+ L + NV
Sbjct: 1   LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNV 43

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71

>gnl|CDD|143231 cd05754, Ig3_Perlecan_like, Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

 Score = 39.1 bits (91), Expect = 5e-04
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 412 KAGDKVRLECVAFGY-PVPSYNWTRRGSPLPRNAYFENFNRILTIPNVK 459
           + G  V   C A    P  +  WTR G  LP  A   +FN ILTI NV+
Sbjct: 14  RPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRAM--DFNGILTIRNVQ 60

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. Length = 85

>gnl|CDD|143275 cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 39.1 bits (91), Expect = 5e-04
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 10/72 (13%)

Query: 214 LSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS-DKRFTLSGGNLIINDPRQVEDRGSY 272
           L C   G P P+  W         +    I+    D R  +S G LI+ D  Q  D   Y
Sbjct: 6   LDCQVEGIPTPNITW--------SINGAPIEGTDPDPRRHVSSGALILTD-VQPSDTAVY 56

Query: 273 HCKASNKFGSII 284
            C+A N+ G+++
Sbjct: 57  QCEARNRHGNLL 68

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 76

>gnl|CDD|143275 cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 39.1 bits (91), Expect = 5e-04
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 10/72 (13%)

Query: 487 LSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS-DKRFTLSGGNLIINDPRQVEDRGSY 545
           L C   G P P+  W         +    I+    D R  +S G LI+ D  Q  D   Y
Sbjct: 6   LDCQVEGIPTPNITW--------SINGAPIEGTDPDPRRHVSSGALILTD-VQPSDTAVY 56

Query: 546 HCKASNKFGSII 557
            C+A N+ G+++
Sbjct: 57  QCEARNRHGNLL 68

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 76

>gnl|CDD|218599 pfam05473, Herpes_UL45, UL45 protein

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 8   LFIFV-SFHSVFSQTIDELEL-RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDL 65
           L +FV     VF+     LE   CP  W+   DSC R   +P  T  +A   C +  S L
Sbjct: 53  LTMFVIVATFVFTVPRMALESGPCPAEWIGLGDSCIRPDGTPADTYEEAVATCAAYPSKL 112

Query: 66  ANVNDA 71
              + A
Sbjct: 113 IPRSTA 118

This family consists several UL45 proteins. The herpes simplex virus UL45 gene encodes an 18 kDa virion envelope protein whose function remains unknown. It has been suggested that the 18 kDa UL45 gene product is required for efficient growth in the central nervous system at low doses and may play an important role under the conditions of a naturally acquired infection. This family also contains several Varicellovirus UL45 or gene 15 proteins. The Equine herpesvirus 1 UL45 protein represents a type II membrane glycoprotein which has found to be non-essential for EHV-1 growth in vitro but deletion reduces the viruses' replication efficiency. Length = 191

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 39.6 bits (92), Expect = 5e-04
 Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 4/75 (5%)

Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----NFNRILTIPNVKVEDQGEYICR 742
           G+  R  C   G P P+  W R G  +  +   +     +     I  V++ D+G Y   
Sbjct: 18  GESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVV 77

Query: 743 ASNDRSALESSVTIS 757
             N     E+  T++
Sbjct: 78  VENSEGKQEAQFTLT 92

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 39.1 bits (91), Expect = 6e-04
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA--YFENFNRILTIPNVKMRGPY 464
           G  +R EC A G P P+Y W + G PL        E  +  +T  ++   G Y
Sbjct: 14  GSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMY 66

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin

 Score = 39.0 bits (91), Expect = 7e-04
 Identities = 29/84 (34%), Positives = 34/84 (40%), Gaps = 12/84 (14%)

Query: 680 FPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI------LTIPN-VK 732
           FPE    G KV L C A G P P+Y W   G+        E  +R       L I N  K
Sbjct: 13  FPEESDEG-KVSLNCRARGSPPPTYRWLMNGT----EIDDEPDSRYSLVGGNLVISNPSK 67

Query: 733 VEDQGEYICRASNDRSALESSVTI 756
            +D G Y C ASN    + S    
Sbjct: 68  AKDAGRYQCLASNIVGTVLSREAT 91

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal activity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 91

>gnl|CDD|143210 cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 18/75 (24%)

Query: 692 LECVAFGYPVPSYNWTRRGSPL-----------PRNAYFENFNRILTIPN-VKVED-QGE 738
           ++C A G P P+++WTR G+             P +        ++   N  + ED +GE
Sbjct: 3   IKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTL-----VIDNMNGGRAEDYEGE 57

Query: 739 YICRASNDRSALESS 753
           Y C ASN+     S+
Sbjct: 58  YQCYASNELGTAISN 72

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. Length = 77

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 38.3 bits (89), Expect = 8e-04
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 690 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFE-NFNRILTIPNVKVEDQGEYICRASN 745
           V++ C A G P P+  W + G  +  +  F  +    L I +V V DQG Y C A N
Sbjct: 1   VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARN 57

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|143277 cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 39.2 bits (91), Expect = 9e-04
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 13/82 (15%)

Query: 677 PK-TFPE---APKAGDKVRLECVAFGYPVPSYNW-------TRRGSPLPRNAYFENFNRI 725
           PK T+ E   A +  +++ L C A G P+PS  W       +     L  +    +  R+
Sbjct: 3   PKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARV 62

Query: 726 --LTIPNVKVEDQGEYICRASN 745
             LT+  ++  D GEY+C ASN
Sbjct: 63  SSLTLKYIQYTDAGEYLCTASN 84

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 97

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 37.9 bits (87), Expect = 0.001
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 8/52 (15%)

Query: 417 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI--------LTIPNVKM 460
           V L C+A G P P+  W + G PLP +      +          LTI NV +
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTL 52

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|222982 PHA03097, PHA03097, C-type lectin-like protein; Provisional

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 8  LFIFVSFHSVFSQTIDELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLAN 67
          L   V   S      D   L C   WV Y + CY F ++ +  ++ A   C  +D  L  
Sbjct: 25 LIALVIILSCKLSPGDRSGLNCRSGWVGYNNKCYTFSEN-ITNKHLAIERCADMDGILTL 83

Query: 68 VNDADEHGFI 77
          ++D  E  F+
Sbjct: 84 IDDQKEVLFV 93

Length = 157

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 37.6 bits (87), Expect = 0.002
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 768 LTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
           ++D   D  + L W C+A G P   Y W +NG+
Sbjct: 6   ISDTEADIGSSLRWECKASGNPRPAYRWLKNGQ 38

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143283 cd05875, Ig6_hNeurofascin_like, Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

 Score = 37.6 bits (87), Expect = 0.002
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 13/84 (15%)

Query: 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS--GGNLIIN---DPRQV 266
           I + C A G P P+++W +             +   D R ++    G L+I+     R  
Sbjct: 1   IIIECEAKGNPVPTFQWTRN--------GKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPE 52

Query: 267 EDRGSYHCKASNKFGSIISESVQL 290
           +  G Y C A N  G+ +S  + L
Sbjct: 53  DYEGEYQCFARNNLGTALSNKILL 76

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms. Length = 77

>gnl|CDD|143283 cd05875, Ig6_hNeurofascin_like, Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

 Score = 37.6 bits (87), Expect = 0.002
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 13/84 (15%)

Query: 485 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS--GGNLIIN---DPRQV 539
           I + C A G P P+++W +             +   D R ++    G L+I+     R  
Sbjct: 1   IIIECEAKGNPVPTFQWTRN--------GKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPE 52

Query: 540 EDRGSYHCKASNKFGSIISESVQL 563
           +  G Y C A N  G+ +S  + L
Sbjct: 53  DYEGEYQCFARNNLGTALSNKILL 76

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms. Length = 77

>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 15/71 (21%)

Query: 687 GDKVRLECVAFGYPVPSYNWTRR------------GSPLPRNAYFENFNRILTIPNVKVE 734
            +++ L C A G P+P   W R             G  + R     +    LT+ +V++ 
Sbjct: 16  LEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVS---SLTLKDVQLT 72

Query: 735 DQGEYICRASN 745
           D G Y C ASN
Sbjct: 73  DAGRYDCEASN 83

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96

>gnl|CDD|143260 cd05852, Ig5_Contactin-1, Fifth Ig domain of contactin-1

 Score = 37.3 bits (86), Expect = 0.002
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 13/79 (16%)

Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI-------LTIPNVKVEDQGEY 739
           G +V +EC     P P ++W++ G+ L       N +RI       L I N+   D+G Y
Sbjct: 1   GGRVIIECKPKAAPKPKFSWSK-GTEL-----LVNNSRISIWDDGSLEILNITKLDEGSY 54

Query: 740 ICRASNDRSALESSVTISI 758
            C A N+R    S+  +S+
Sbjct: 55  TCFAENNRGKANSTGVLSV 73

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1

 Score = 37.3 bits (86), Expect = 0.003
 Identities = 17/46 (36%), Positives = 22/46 (47%)

Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVK 459
           G  V LEC A G PVP   W +   P+P  A       +L I N++
Sbjct: 16  GQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQ 61

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 7/73 (9%)

Query: 687 GDKVRLECVA-FGYPVPSYNWTRRGSPL----PRNAYFENFNRILTIPNVKVEDQGEYIC 741
           G+   LEC    G+P P+ +W + G PL     R    ++ N  L I   +  D+G Y C
Sbjct: 11  GEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGN--LLIAEARKSDEGTYKC 68

Query: 742 RASNDRSALESSV 754
            A+N     ES+ 
Sbjct: 69  VATNMVGERESAA 81

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143248 cd05771, IgC_Tapasin_R, Tapasin-R immunoglobulin-like domain

 Score = 38.3 bits (89), Expect = 0.003
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 2/74 (2%)

Query: 726 LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEA 785
           LT+P + V D+G YIC  S      +  + +S+   P   + L       +   T  C  
Sbjct: 3   LTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHI 62

Query: 786 FG-VP-DVTYSWFR 797
            G  P DV   W R
Sbjct: 63  AGYYPLDVQVEWTR 76

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal. Length = 139

>gnl|CDD|143253 cd05845, Ig2_L1-CAM_like, Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

 Score = 37.1 bits (86), Expect = 0.003
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 317 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGN-YSCNVQ 371
           C+PP +   +  YW      + + +D+RV +  +G LYF+ +E+ D+   Y C+  
Sbjct: 25  CNPPKSAVPLRIYWMNSDLLH-ITQDERVSMGQNGNLYFANVEEQDSHPDYICHAH 79

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 95

>gnl|CDD|143253 cd05845, Ig2_L1-CAM_like, Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

 Score = 37.1 bits (86), Expect = 0.003
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 590 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGN-YSCNVQ 644
           C+PP +   +  YW      + + +D+RV +  +G LYF+ +E+ D+   Y C+  
Sbjct: 25  CNPPKSAVPLRIYWMNSDLLH-ITQDERVSMGQNGNLYFANVEEQDSHPDYICHAH 79

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 95

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 36.8 bits (85), Expect = 0.004
 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 5/81 (6%)

Query: 683 APKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRN----AY-FENFNRILTIPNVKVEDQG 737
           A  A + V+  C A G P P+  W + G    +      Y   N +  L + +V   D+G
Sbjct: 5   AVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG 64

Query: 738 EYICRASNDRSALESSVTISI 758
            Y C   N+  ++  +  + +
Sbjct: 65  NYTCVVENEYGSINHTYHLDV 85

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|153064 cd03594, CLECT_REG-1_like, C-type lectin-like domain (CTLD) of the type found in Human REG-1 (lithostathine), REG-4, and avian eggshell-specific proteins: ansocalcin, structhiocalcin-1(SCA-1), and -2(SCA-2)

 Score = 37.7 bits (88), Expect = 0.004
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSL--DSDLANVNDADEHGFI 77
          CP+ W+ Y+ +CY + + P  + +DA+L C+     + LA+++   E   I
Sbjct: 1  CPKGWLPYKGNCYGYFRQP-LSWSDAELFCQKYGPGAHLASIHSPAEAAAI 50

CLECT_REG-1_like: C-type lectin-like domain (CTLD) of the type found in Human REG-1 (lithostathine), REG-4, and avian eggshell-specific proteins: ansocalcin, structhiocalcin-1(SCA-1), and -2(SCA-2). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. REG-1 is a proliferating factor which participates in various kinds of tissue regeneration including pancreatic beta-cell regeneration, regeneration of intestinal mucosa, regeneration of motor neurons, and perhaps in tissue regeneration of damaged heart. REG-1 may play a role on the pathophysiology of Alzheimer's disease and in the development of gastric cancers. Its expression is correlated with reduced survival from early-stage colorectal cancer. REG-1 also binds and aggregates several bacterial strains from the intestinal flora and it has been suggested that it is involved in the control of the intestinal bacterial ecosystem. Rat lithostathine has calcium carbonate crystal inhibitor activity in vitro. REG-IV is unregulated in pancreatic, gastric, hepatocellular, and prostrate adenocarcinomas. REG-IV activates the EGF receptor/Akt/AP-1 signaling pathway in colorectal carcinoma. Ansocalcin, SCA-1 and -2 are found at high concentration in the calcified egg shell layer of goose and ostrich, respectively and tend to form aggregates. Ansocalcin nucleates calcite crystal aggregates in vitro. Length = 129

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	813
KOG3513|consensus	1051		100.0
KOG3513|consensus	1051		100.0
KOG4222|consensus	1281		100.0
KOG4221|consensus	1381		100.0
KOG4221|consensus	1381		100.0
KOG4222|consensus	1281		100.0
KOG4194|consensus	873		99.97
PHA02785	326	IL-beta-binding protein; Provisional	99.97
KOG3515|consensus	741		99.97
KOG4194|consensus	873		99.96
PHA02785	326	IL-beta-binding protein; Provisional	99.96
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	99.92
cd03599	153	CLECT_DGCR2_like C-type lectin-like domain (CTLD)	99.91
cd03588	124	CLECT_CSPGs C-type lectin-like domain (CTLD) of th	99.91
cd03597	129	CLECT_attractin_like C-type lectin-like domain (CT	99.9
KOG3515|consensus	741		99.9
cd03589	137	CLECT_CEL-1_like C-type lectin-like domain (CTLD)	99.89
PHA02642	216	C-type lectin-like protein; Provisional	99.89
cd03590	126	CLECT_DC-SIGN_like C-type lectin-like domain (CTLD	99.89
cd03594	129	CLECT_REG-1_like C-type lectin-like domain (CTLD)	99.89
cd03593	116	CLECT_NK_receptors_like C-type lectin-like domain	99.88
cd03596	129	CLECT_tetranectin_like C-type lectin-like domain (	99.87
PHA02953	170	IEV and EEV membrane glycoprotein; Provisional	99.87
PHA03097	157	C-type lectin-like protein; Provisional	99.87
PHA02826	227	IL-1 receptor-like protein; Provisional	99.85
cd03598	117	CLECT_EMBP_like C-type lectin-like domain (CTLD) o	99.83
PHA02826	227	IL-1 receptor-like protein; Provisional	99.81
PHA02867	167	C-type lectin protein; Provisional	99.81
cd03591	114	CLECT_collectin_like C-type lectin-like domain (CT	99.81
cd03603	118	CLECT_VCBS A bacterial subgroup of the C-type lect	99.81
smart00034	126	CLECT C-type lectin (CTL) or carbohydrate-recognit	99.8
cd03592	115	CLECT_selectins_like C-type lectin-like domain (CT	99.78
cd03601	119	CLECT_TC14_like C-type lectin-like domain (CTLD) o	99.78
cd03595	149	CLECT_chondrolectin_like C-type lectin-like domain	99.76
cd03600	141	CLECT_thrombomodulin_like C-type lectin-like domai	99.75
cd03602	108	CLECT_1 C-type lectin (CTL)/C-type lectin-like (CT	99.74
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.73
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.7
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.67
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.66
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.66
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.66
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.64
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.64
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.64
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.63
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.63
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.63
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.63
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.63
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.62
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.61
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.61
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.61
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.61
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.6
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.6
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.6
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.6
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.59
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.59
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.58
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.58
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.58
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.58
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.57
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.57
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.57
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.57
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.57
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.57
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.56
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.56
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.56
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.56
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.56
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.56
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.56
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.55
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.54
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.54
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.53
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.53
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.53
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.53
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.52
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.52
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.52
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.52
PHA02911	213	C-type lectin-like protein; Provisional	99.51
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.51
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.51
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.51
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.51
cd00037	116	CLECT C-type lectin (CTL)/C-type lectin-like (CTLD	99.51
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.5
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.5
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.5
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.5
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.49
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.49
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.49
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.49
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.49
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.48
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.48
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.48
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.48
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.48
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.48
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.48
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.47
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.47
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.47
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.46
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.46
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.46
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.45
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.45
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.45
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.45
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.45
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.44
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.43
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.43
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.43
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.43
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.42
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.42
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.42
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.42
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.42
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.42
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.42
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.41
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.41
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.41
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.41
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.4
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.4
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.4
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.4
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.4
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.39
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.39
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.39
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.39
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.39
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.39
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.39
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.39
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.38
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.38
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.38
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.38
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.38
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.38
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.38
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.37
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.37
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.37
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.37
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.37
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.36
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.36
PF00059	105	Lectin_C: Lectin C-type domain; InterPro: IPR00130	99.36
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.35
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.35
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.35
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.34
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.34
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.34
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.33
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.33
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.33
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.33
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.32
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.32
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.31
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.31
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.31
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.31
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.31
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.3
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.3
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.3
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.29
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.29
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.28
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.28
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.28
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.28
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.28
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.27
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.26
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.26
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.26
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.26
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.25
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.24
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.23
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.22
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.21
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.21
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.21
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.19
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.17
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.17
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.15
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.15
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.14
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.14
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.14
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.12
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.11
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.1
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.09
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	99.07
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.05
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.04
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	99.04
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.03
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	99.03
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.03
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	99.02
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	99.01
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.01
PF05473	200	Herpes_UL45: UL45 protein; InterPro: IPR008646 Thi	98.98
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.97
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.95
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.95
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	98.95
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	98.95
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.92
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.92
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.91
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.91
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.87
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	98.87
smart00409	86	IG Immunoglobulin.	98.86
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.86
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.8
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.79
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.79
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.76
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.73
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.71
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.69
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.67
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.63
PHA03376	221	BARF1; Provisional	98.62
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.62
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.61
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.58
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.54
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.54
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.53
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.53
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.53
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.52
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.52
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.51
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.5
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.5
smart00409	86	IG Immunoglobulin.	98.45
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.45
PHA03376	221	BARF1; Provisional	98.42
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.41
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.39
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.37
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.36
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.35
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.34
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.31
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.31
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.31
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.27
KOG0613|consensus	1205		98.26
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.25
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.24
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.24
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.23
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.23
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.23
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.21
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.2
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.2
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.17
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.17
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.16
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.16
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.15
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.13
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.13
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.12
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.12
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.12
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.11
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.11
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.1
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.09
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.09
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.09
KOG1480|consensus	909		98.08
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.08
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.06
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.05
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.05
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.05
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.04
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.01
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.01
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	97.99
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	97.98
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	97.93
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	97.93
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	97.86
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.84
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	97.84
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	97.83
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	97.79
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	97.78
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	97.78
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	97.75
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	97.75
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	97.74
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	97.74
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	97.72
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.72
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	97.71
PHA02987	189	Ig domain OX-2-like protein; Provisional	97.71
KOG0613|consensus	1205		97.69
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.68
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	97.68
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	97.68
smart00407	75	IGc1 Immunoglobulin C-Type.	97.64
PHA03269	566	envelope glycoprotein C; Provisional	97.64
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.62
KOG1480|consensus	909		97.61
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.59
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.59
smart00407	75	IGc1 Immunoglobulin C-Type.	97.59
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	97.55
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	97.54
PHA03269	566	envelope glycoprotein C; Provisional	97.53
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.49
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.49
PHA03273	486	envelope glycoprotein C; Provisional	97.48
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	97.46
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	97.46
PHA03270	466	envelope glycoprotein C; Provisional	97.43
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.43
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.37
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.34
PHA03270	466	envelope glycoprotein C; Provisional	97.34
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	97.34
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	97.31
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.3
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.29
PHA03271	490	envelope glycoprotein C; Provisional	97.29
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.26
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.23
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.23
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.22
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.22
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.2
PHA02672	166	ORF110 EEV glycoprotein; Provisional	97.2
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.2
PHA03271	490	envelope glycoprotein C; Provisional	97.19
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.17
PHA03273	486	envelope glycoprotein C; Provisional	97.15
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.13
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.07
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.07
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.04
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.03
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.02
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.01
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	96.92
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	96.92
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	96.9
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	96.89
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	96.89
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	96.85
cd05770	93	IgC_beta2m Class I major histocompatibility comple	96.85
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	96.78
smart00406	81	IGv Immunoglobulin V-Type.	96.74
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	96.72
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	96.68
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	96.66
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	96.66
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	96.65
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	96.63
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	96.57
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	96.45
PHA02673	161	ORF109 EEV glycoprotein; Provisional	96.44
smart00406	81	IGv Immunoglobulin V-Type.	96.39
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	96.28
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	96.28
PHA02914	500	Immunoglobulin-like domain protein; Provisional	96.25
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	96.24
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	96.24
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	96.2
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	96.13
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	96.1
PHA02633	63	hypothetical protein; Provisional	96.09
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	95.97
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	95.85
PHA03093	185	EEV glycoprotein; Provisional	95.73
KOG4597|consensus	560		95.68
PHA02633	63	hypothetical protein; Provisional	95.5
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	95.23
PHA02982	251	hypothetical protein; Provisional	95.18
PHA03042	286	CD47-like protein; Provisional	95.07
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	94.95
PHA02914	500	Immunoglobulin-like domain protein; Provisional	94.76
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	94.33
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	94.3
PF05966	190	Chordopox_A33R: Chordopoxvirus A33R protein; Inter	94.19
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	94.18
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	94.11
PHA02982	251	hypothetical protein; Provisional	94.06
PHA03282	540	envelope glycoprotein E; Provisional	93.33
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	92.57
KOG4597|consensus	560		91.93
PHA03042	286	CD47-like protein; Provisional	91.47
cd03519	91	Link_domain_HAPLN_module_2 Link_domain_HAPLN_modul	91.22
PF02124	211	Marek_A: Marek's disease glycoprotein A; InterPro:	91.15
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	90.67
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	90.66
PF02480	439	Herpes_gE: Alphaherpesvirus glycoprotein E; InterP	90.17
KOG1026|consensus	774		89.42
KOG1026|consensus	774		88.38
PF06832	89	BiPBP_C: Penicillin-Binding Protein C-terminus Fam	88.27
PHA03286	492	envelope glycoprotein E; Provisional	88.13
PHA03283	542	envelope glycoprotein E; Provisional	88.09
PF08391	119	Ly49: Ly49-like protein, N-terminal region; InterP	87.98
cd03520	96	Link_domain_CSPGs_modules_2_4 Link_domain_CSPGs_mo	86.87
PHA03281	642	envelope glycoprotein E; Provisional	86.81
cd01102	92	Link_Domain The link domain is a hyaluronan (HA)-b	84.77
smart00445	94	LINK Link (Hyaluronan-binding).	84.0
PF06832	89	BiPBP_C: Penicillin-Binding Protein C-terminus Fam	83.55
PHA02865	338	MHC-like TNF binding protein; Provisional	83.13
cd05890	98	Ig2_Nectin-1_like Second immunoglobulin (Ig) domai	83.0
PF02010	440	REJ: REJ domain; InterPro: IPR002859 The REJ (Rece	82.83
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	82.47
cd03518	95	Link_domain_HAPLN_module_1 Link_domain_HAPLN_modul	81.44
PHA03052	69	Hypothetical protein; Provisional	81.37
PHA03283	542	envelope glycoprotein E; Provisional	81.32
KOG0200|consensus	609		81.12
cd03515	93	Link_domain_TSG_6_like This is the extracellular l	80.66

>KOG3513|consensus

Probab=100.00  E-value=4.7e-69  Score=582.98  Aligned_cols=544  Identities=31%  Similarity=0.566  Sum_probs=452.8

Q ss_pred             CceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCC
Q psy14896        190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR  269 (813)
Q Consensus       190 P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~  269 (813)
                      |+|+.+|.+..+.....  -..+.|.|++.|+|.|+++|+|||.++        ++....++.+..|+|.|.+.....|.
T Consensus        40 P~f~~q~~~~~~~~~~~--~~~v~l~C~A~G~P~Psy~W~kng~~~--------d~~~~~~~~~~~G~lvI~~p~~~~d~  109 (1051)
T KOG3513|consen   40 PVFVEQPNDVIVPFPSD--DSSVTLNCEANGNPEPSYRWTKNGTEF--------DPTEYPRVSVLGGTLVITNPDAALDQ  109 (1051)
T ss_pred             ceeeecCCceEEecccC--CccEEEEEEecCCCCceeEEEECCeec--------ccccccceeeecCceEecCCcchhhc
Confidence            89999998877766643  124999999999999999999999754        55666777777999999987558999


Q ss_pred             eeEEEEeecCceeeEeeeeEEeeeeeccccc-CCCCceeecCCCeEEEecCCCCCCcceEEEeecccccc-ccCCccEEE
Q psy14896        270 GSYHCKASNKFGSIISESVQLAFGFIGEFNL-KRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNF-VEEDKRVFV  347 (813)
Q Consensus       270 G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~-~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~-~~~~~~~~~  347 (813)
                      |.|.|.|+|..|+++|.++.|+..+.+.|.. ...+..+.+|+++.|.|.++.+.|.+.+.|..++.+.. ..+..|+.+
T Consensus       110 G~YqC~AsN~~Gta~S~~~~l~~~~i~~F~~e~~~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~~~~~~~~~~~~~r~~~  189 (1051)
T KOG3513|consen  110 GIYQCFASNKLGTAVSREARLQFGFIPKFKKEERSPVEVEEGDGVVLPCNPPAHFPPLRYYWMLNEFPHFVQIDNRRVFS  189 (1051)
T ss_pred             ceeEEEeecccceeeccceeecccccccCccccCCcEEEEeCCceEEeCCCCCCCCCccEEehhccCCcccccCcceeEe
Confidence            9999999999999999999999999999884 47888999999999999999999999999998877643 334479999


Q ss_pred             ccCccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEEEEeecC
Q psy14896        348 SYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYP  427 (813)
Q Consensus       348 ~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p  427 (813)
                      ..+|+|.|.+|..+|.+.|.|.|.+........+..+.|.+..........+.-..+.........|+.+.|+|.+.|+|
T Consensus       190 ~~~G~Lyfs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P  269 (1051)
T KOG3513|consen  190 QENGNLYFSNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECFALGNP  269 (1051)
T ss_pred             cccceEEEeecchhhcCceEEEEEchhhcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEEecCCC
Confidence            99999999999999999999999998877788888899998443222222111111222246788999999999999999


Q ss_pred             CCeeeEeecCC-cCCCCceeccccceEEEcccc--cccceEEeCCCceEec-------------------ccccccccCe
Q psy14896        428 VPSYNWTRRGS-PLPRNAYFENFNRILTIPNVK--MRGPYFIKQPTDVVFD-------------------LSKRSILNDI  485 (813)
Q Consensus       428 ~p~i~W~~~~~-~l~~~~~~~~~~~~l~i~~~~--~~g~y~~~~~~~~~~~-------------------~~~~~~g~~~  485 (813)
                      .|.|.|+|.++ +++....+...+.+|.|.++.  ++|.|.|.+.|.....                   ......|+++
T Consensus       270 ~P~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v  349 (1051)
T KOG3513|consen  270 TPQIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPYWLQKPQDTEADTGSNV  349 (1051)
T ss_pred             CCcEEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEecccccceeeEEEEEecCchhhcccceeEecCCCCe
Confidence            99999999888 777788888999999999986  4899999877653211                   1123678999


Q ss_pred             EEEEEeeccCCCcEEEeeccccccceeccccCCCCCceEEeeCCeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEE
Q psy14896        486 TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAF  565 (813)
Q Consensus       486 ~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v  565 (813)
                      +|.|.+.|.|.|.|+|+|||.++.       ......++.+.++.|.|.++ +..|+|+|.|.|+|..|...+. +.|.|
T Consensus       350 ~~eC~a~g~P~p~v~WlkNg~pl~-------~~~r~~~~~i~~g~L~is~v-~~~dsg~YQC~A~Nk~G~i~an-A~L~V  420 (1051)
T KOG3513|consen  350 TLECKASGKPNPTVKWLKNGEPLE-------PAERDPRYKIDDGTLIISNV-QESDSGVYQCIAENKYGTIYAN-AELKV  420 (1051)
T ss_pred             EEEEEecCCCCCceEEeeCCeecC-------ccCCCcceEEeCCEEEEEec-ccccCeEEEeeeecccceEeee-eEEEE
Confidence            999999999999999999998763       12334568899999999997 8999999999999999998665 78888


Q ss_pred             eec-ccccccCCCc--eeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEE
Q psy14896        566 GFI-GEFNLKRAPE--IGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCN  642 (813)
Q Consensus       566 ~~~-p~~~~~~~~~--~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  642 (813)
                      ... |.|...+...  .+..|..+.|.|.+ .+.|.+.++|.|++.  .+..+.|+.+..+|+|.|.+++.+|+|.|+|.
T Consensus       421 ~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~-~asP~p~~~W~k~~~--~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~  497 (1051)
T KOG3513|consen  421 LASAPVFPLNPVERKVMAVVGGTVTIDCKP-FASPKPKVSWLKGGE--KLLQSGRIRILEDGTLEISNVTRSDAGKYTCV  497 (1051)
T ss_pred             EccCCCCCCCccceEEEEEeCCeEEEeecc-CCCCcceEEEEcCCc--ccccCceEEECCCCcEEecccCcccCcEEEEE
Confidence            655 6666554444  56789999999999 899999999999997  36678899999999999999999999999999


Q ss_pred             EEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCC--CeEEEEeCCcccCCC---c
Q psy14896        643 VQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPV--PSYNWTRRGSPLPRN---A  717 (813)
Q Consensus       643 a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~--p~i~W~k~g~~l~~~---~  717 (813)
                      |+|..|.+...   ..|.|..++++..  .      +....+..|++++|+|++.-+|.  ..|.|.+||..+...   .
T Consensus       498 A~N~~G~a~~~---~~L~Vkd~tri~~--~------P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~  566 (1051)
T KOG3513|consen  498 AENKLGKAEST---GNLIVKDATRITL--A------PSNTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGD  566 (1051)
T ss_pred             EEcccCccceE---EEEEEecCceEEe--c------cchhhhccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCC
Confidence            99999987654   7899999888765  2      23367899999999999987775  589999999977533   3


Q ss_pred             eeeecc----eEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCCcccc
Q psy14896        718 YFENFN----RILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTI  766 (813)
Q Consensus       718 ~~~~~~----~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~~~~  766 (813)
                      ++...+    +.|+|.+++.+|+|.|+|+|.-.+-+.++.+.|.|.+||..+.
T Consensus       567 ~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~gpPgpP~  619 (1051)
T KOG3513|consen  567 HFEINDGSDSGRLTIANVSLEDSGKYTCVAQTALDSASARADLLVRGPPGPPP  619 (1051)
T ss_pred             ceEEeCCcCccceEEEeeccccCceEEEEEEEeecchhcccceEEecCCCCCC
Confidence            333222    3599999999999999999999888999999999999987654

>KOG3513|consensus

Probab=100.00  E-value=2.2e-55  Score=476.86  Aligned_cols=464  Identities=24%  Similarity=0.365  Sum_probs=373.0

Q ss_pred             CeEEEecCCCCCCcceEEEeeccccccccCCccEEEccCccEEEeeee-ecCCeeeEEEEeeeccccCCCCCceeeEEcc
Q psy14896        312 GKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALE-QIDAGNYSCNVQSKVSDTGRNGPFFPLKVFP  390 (813)
Q Consensus       312 ~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~v~-~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~  390 (813)
                      .++|.|. +.|+|.|+++|+|||..+......++.+. .|+|.|.+.. ..|.|.|+|.|+|..|..-  +..+.|....
T Consensus        59 ~v~l~C~-A~G~P~Psy~W~kng~~~d~~~~~~~~~~-~G~lvI~~p~~~~d~G~YqC~AsN~~Gta~--S~~~~l~~~~  134 (1051)
T KOG3513|consen   59 SVTLNCE-ANGNPEPSYRWTKNGTEFDPTEYPRVSVL-GGTLVITNPDAALDQGIYQCFASNKLGTAV--SREARLQFGF  134 (1051)
T ss_pred             cEEEEEE-ecCCCCceeEEEECCeecccccccceeee-cCceEecCCcchhhcceeEEEeecccceee--ccceeecccc
Confidence            3789999 58999999999999999877777777665 8899999988 8899999999999998543  3345555544


Q ss_pred             CCcccccccCCCCCCCCCcCCCCCCcEEEEEEEe-ecCCCeeeEeecCCcCCC----CceeccccceEEEccccc--ccc
Q psy14896        391 HSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF-GYPVPSYNWTRRGSPLPR----NAYFENFNRILTIPNVKM--RGP  463 (813)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~~-g~p~p~i~W~~~~~~l~~----~~~~~~~~~~l~i~~~~~--~g~  463 (813)
                      -+.+....       ..+..+.+|+.+.|.|... +.|.+.+.|..+..+-..    ...+....+.|-+.+++.  .+.
T Consensus       135 i~~F~~e~-------~~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~~~~~~~~~~~~~r~~~~~~G~Lyfs~V~~~D~~~  207 (1051)
T KOG3513|consen  135 IPKFKKEE-------RSPVEVEEGDGVVLPCNPPAHFPPLRYYWMLNEFPHFVQIDNRRVFSQENGNLYFSNVETSDFGN  207 (1051)
T ss_pred             cccCcccc-------CCcEEEEeCCceEEeCCCCCCCCCccEEehhccCCcccccCcceeEecccceEEEeecchhhcCc
Confidence            44333222       3345799999999999984 678899999987654321    233445567788877764  689


Q ss_pred             eEEeCCCc------------eEec------------------ccccccccCeEEEEEeeccCCCcEEEeeccccccceec
Q psy14896        464 YFIKQPTD------------VVFD------------------LSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVA  513 (813)
Q Consensus       464 y~~~~~~~------------~~~~------------------~~~~~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~~  513 (813)
                      |.|.+...            +.+.                  ......|+.+.|+|-+.|+|.|+|.|.|.|..      
T Consensus       208 Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~------  281 (1051)
T KOG3513|consen  208 YICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGK------  281 (1051)
T ss_pred             eEEEEEchhhcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCC------
Confidence            99965321            1110                  11235689999999999999999999998842      


Q ss_pred             cccCCCCCceEEeeCCeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEEeecccccccCCCceeccCCCceEEeCCC
Q psy14896        514 NLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPP  593 (813)
Q Consensus       514 ~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~  593 (813)
                         ......++.-.+..|.|.++ +.+|+|.|+|.|+|..|.. +....+.|..+|.+........+..|++++|.|.+ 
T Consensus       282 ---~~~~r~~~~~~~~vL~I~nv-~~~D~G~Y~C~AeN~~G~~-~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a-  355 (1051)
T KOG3513|consen  282 ---PPPRRATYSNYGKVLKIPNV-QYEDAGEYECIAENSRGSA-THSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKA-  355 (1051)
T ss_pred             ---CCCcceeeeccccEEEeccc-CcCCCeEEEEEEecccccc-eeeEEEEEecCchhhcccceeEecCCCCeEEEEEe-
Confidence               11222334445679999997 9999999999999999955 66689999999999998899999999999999999 


Q ss_pred             CCCCccEEEEccCCCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEEEEeeecCccccCceeeEEEccCCCccccccC
Q psy14896        594 TNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFP  673 (813)
Q Consensus       594 ~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p  673 (813)
                      .|.|.|+|+|+|||.++...+........+|+|+|.+++..|+|.|.|.|+|..|.....   +.|.|..........  
T Consensus       356 ~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~an---A~L~V~a~~P~f~~~--  430 (1051)
T KOG3513|consen  356 SGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYAN---AELKVLASAPVFPLN--  430 (1051)
T ss_pred             cCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeee---eEEEEEccCCCCCCC--
Confidence            799999999999999876444433344578999999999999999999999999886554   778887763222110  


Q ss_pred             CCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeee-cceEEEECCCCCCCCEEEEEEEEcCCCceEE
Q psy14896        674 NNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFEN-FNRILTIPNVKVEDQGEYICRASNDRSALES  752 (813)
Q Consensus       674 ~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~  752 (813)
                         +......+..|.++.|.|...+.|.|.++|.|+++.+..+.++.. .+++|.|.+++.+|+|.|+|.|+|.+|.++.
T Consensus       431 ---p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~  507 (1051)
T KOG3513|consen  431 ---PVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAES  507 (1051)
T ss_pred             ---ccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCCcEEecccCcccCcEEEEEEEcccCccce
Confidence               111224678999999999999999999999999997777776654 6899999999999999999999999999999


Q ss_pred             EEEEEEEcCCcccccCCceeecCCCeEEEEEEEcccC--CceEEEEECCEeccccc
Q psy14896        753 SVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVP--DVTYSWFRNGELGHQMT  806 (813)
Q Consensus       753 ~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p--~~~v~W~k~g~~l~~~~  806 (813)
                      ++.|.|+.+++|...|....+..|+.++|.|++.-+|  ...|.|.+||++|....
T Consensus       508 ~~~L~Vkd~tri~~~P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~  563 (1051)
T KOG3513|consen  508 TGNLIVKDATRITLAPSNTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNP  563 (1051)
T ss_pred             EEEEEEecCceEEeccchhhhccCceEEEEeecccCCCcceEEEEEECCEEhhccC
Confidence            9999999999999999999999999999999998776  55799999999886554

>KOG4222|consensus

Probab=100.00  E-value=3.5e-49  Score=422.07  Aligned_cols=466  Identities=23%  Similarity=0.367  Sum_probs=378.9

Q ss_pred             CCCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCcc--
Q psy14896        188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQ--  265 (813)
Q Consensus       188 ~~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--  265 (813)
                      .+|+|+..|.+..+..+     +.++|.|.++|.|+|+|+|||+|+...      -....+.|+.+.+|+|++...++  
T Consensus        30 ~~p~iiehp~d~vvs~~-----~patlnc~asG~ppPti~w~k~G~~~~------~~e~~shR~~lp~gsLf~l~~ahg~   98 (1281)
T KOG4222|consen   30 QPPRIIEHPHDLVVSKG-----EPATLNCKASGDPPPTIEWYKDGENVF------KGEPGSHRFLLPDGSLFLLRLAHGK   98 (1281)
T ss_pred             CCCceEecchhhhccCC-----CCceeecCCCCCCCCceecccCCcccC------CCCCCCcceecCCccEEEEecccCC
Confidence            57999999999998777     669999999999999999999997542      22466778889999987774322  


Q ss_pred             --ccCCeeEEEEeecCceeeEeeeeEEeeeeec-ccccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCC
Q psy14896        266 --VEDRGSYHCKASNKFGSIISESVQLAFGFIG-EFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEED  342 (813)
Q Consensus       266 --~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~-~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~  342 (813)
                        ..|.|.|+|+|+|..|.+.|..+.|.+.... .|.+.+.......|+.++|.|..+.|.|.+.++|.|||+++.+...
T Consensus        99 ~a~~d~G~y~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~  178 (1281)
T KOG4222|consen   99 KAGHDHGVYSCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDV  178 (1281)
T ss_pred             cccCCCceeEeeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccc
Confidence              3499999999999999999999999987765 4888888888889999999999999999999999999999877788


Q ss_pred             ccEEEccCccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEEE
Q psy14896        343 KRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECV  422 (813)
Q Consensus       343 ~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~  422 (813)
                      .++.+...|.|.|.++...|+|.|.|+++|..|.  ..+..+.|+|+++|.+...        .....+..|..+.+.|.
T Consensus       179 ~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~--ReS~~A~lsv~e~P~f~~r--------p~~~~v~~g~~~~f~c~  248 (1281)
T KOG4222|consen  179 PIIALISGGNLLISNVRKSDEGTYACVATNMVGE--RESIPARLSVQEKPWFWKR--------PKDLAVLVGAAAEFDCR  248 (1281)
T ss_pred             eeEEEecCCcEEEeccccCCCceeeeeecccccc--cccccceeeeccCCccccc--------cccceeecccccccccc
Confidence            8888889999999999999999999999999985  4456789999888765322        23356777888888888


Q ss_pred             EeecCCCeeeEeecCCcCCCCceeccccceEEEcccccccceEEeCCCceEecccccccccCeEEEEEeeccCCCcEEEe
Q psy14896        423 AFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWF  502 (813)
Q Consensus       423 ~~g~p~p~i~W~~~~~~l~~~~~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~  502 (813)
                      +.|.|.|.+.|.+++..++..                                                           
T Consensus       249 v~GdP~P~Vrwkk~~~~~P~~-----------------------------------------------------------  269 (1281)
T KOG4222|consen  249 VGGDPQPTVRWKKDDPSLPRS-----------------------------------------------------------  269 (1281)
T ss_pred             cCCCCCCceeeeccCCCCCcc-----------------------------------------------------------
Confidence            888888888888876665432                                                           


Q ss_pred             eccccccceeccccCCCCCceEEeeCCeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEEeecccccccCCCceecc
Q psy14896        503 KEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQ  582 (813)
Q Consensus       503 k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~p~~~~~~~~~~~~~  582 (813)
                                        ...+...+.+|.|.+. ...|.|.|.|.|+|..|... ....++|..+|.|...+.+..+..
T Consensus       270 ------------------ry~i~~d~qtl~i~r~-tp~deg~y~C~a~n~vG~l~-asa~ltV~apP~f~kkp~dq~v~l  329 (1281)
T KOG4222|consen  270 ------------------RYSILDDTQTLRIDRV-TPTDEGTYVCPAENLVGGLE-ASATLTVQAPPSFGKKPRDQKVAL  329 (1281)
T ss_pred             ------------------ceeeeecccccccccc-CCCcccceeeeccccccccc-cccceEEecCcccccccCcccccc
Confidence                              1112223467888885 88999999999999999974 448999999999999999999999


Q ss_pred             CCCceEEeCCCCCCCccEEEEccCCCCCc------ccCCCeEEEeeCccEEEEeecccCCeeEEEEEEeeecCccccCce
Q psy14896        583 NWGKAMFCDPPTNYPGVNYYWARDYFPNF------VEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPF  656 (813)
Q Consensus       583 g~~~~l~C~~~~~~p~~~v~W~k~~~~~~------~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~  656 (813)
                      |..++|.|++ .|+|.+.+.|.|.|....      ...+.+..+...|+|+|.++...|.|.|.|...+.+|........
T Consensus       330 g~~vt~pc~~-~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~  408 (1281)
T KOG4222|consen  330 GGTVTFPCET-LGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYL  408 (1281)
T ss_pred             CceEEeeeec-CCCCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeecccccccccccceeE
Confidence            9999999999 799999999999876432      234567788888999999999999999999999988876544333


Q ss_pred             eeEEEccC--CCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCc--eeeecceEEEECCCC
Q psy14896        657 FPLKVFPH--SNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA--YFENFNRILTIPNVK  732 (813)
Q Consensus       657 ~~l~v~~~--p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~--~~~~~~~~L~i~~v~  732 (813)
                      ..+.+...  |....      ......++..+|..+.|.|.+.|.|.|.+.|+++|-.+...+  ......++|+|.+..
T Consensus       409 ~qt~~~~~~rPpp~i------~~g~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~d~~~s~~~~~~l~i~dl~  482 (1281)
T KOG4222|consen  409 EQTDVLTDSRPPPII------EQGPANQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNPDSRISQQEIGSLRIRDLK  482 (1281)
T ss_pred             EEEeeeccCCCCcee------eecccccccccCcccccChhhhCCCCCCchhhhcccccccCCcccceeeeceeeeeeee
Confidence            33333221  21111      113334677789999999999999999999999987664333  222335789999999


Q ss_pred             CCCCEEEEEEEEcCCCceEEEEEEEEEc
Q psy14896        733 VEDQGEYICRASNDRSALESSVTISIQA  760 (813)
Q Consensus       733 ~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  760 (813)
                      ..|.|.|+|.|.+..|+..-++.|.|..
T Consensus       483 ~~DtG~YTc~as~~~ges~wSatl~v~~  510 (1281)
T KOG4222|consen  483 GPDTGRYTCIASDESGESTWSATLTVEK  510 (1281)
T ss_pred             cCCCcceeeeccCcccccccceeeEhhh
Confidence            9999999999999999999999999974

>KOG4221|consensus

Probab=100.00  E-value=3.3e-43  Score=378.64  Aligned_cols=502  Identities=21%  Similarity=0.269  Sum_probs=360.5

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeecc--CCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCc--
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGG--YPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPR--  264 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g--~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--  264 (813)
                      +-.|..+|.+.  .+|     ..+.|.|....  .+.+.|.|.|||..+.+.       ..+.+..+.+|+|.|.+..  
T Consensus        41 ~~~f~~ep~d~--~~~-----~svlLecs~~~~~~~~~~i~wkkDg~~l~e~-------~d~~~~~LsNgSl~i~~v~~~  106 (1381)
T KOG4221|consen   41 PLQFLLEPSDA--MEG-----SSVLLECSAYAAGGTSVKIEWKKDGSQLNEV-------YDDRRQLLSNGSLYISSVLAS  106 (1381)
T ss_pred             cceEEeccccc--ccc-----cceEEeccccccCCCCeeEEEccCchhhhhh-------hhhHHhhccCCceeEeeeccc
Confidence            34577788765  445     66999999843  357899999999866431       2245556789999998752  


Q ss_pred             --cccCCeeEEEEeecC-ceeeEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccC
Q psy14896        265 --QVEDRGSYHCKASNK-FGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEE  341 (813)
Q Consensus       265 --~~~d~G~Y~C~a~n~-~g~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~  341 (813)
                        ..-|+|.|+|.|+-. .|+..|..+.|.+...++|.....+..+..|+++.|.|.+ .+.|.+.+.|.||+.++  ..
T Consensus       107 kh~~~~eg~Yqc~atv~~~gsi~Sr~a~v~~a~~~~f~~~~~~~t~~~g~ta~f~c~v-n~e~~p~i~w~kn~~pl--~~  183 (1381)
T KOG4221|consen  107 KHNKVDEGVYQCLATVEDVGSILSRTAKVALAGLADFALQPESTTLLYGQTALFSCEV-NAEPVPTIMWLKNDQPL--PL  183 (1381)
T ss_pred             ccccccCceEEEEEEccccceeecceEEEEecccCccccCccceeEecCCcEEEEEEE-cCccCceeEEecccccc--cC
Confidence              237899999999965 8888999999999999999999999999999999999997 55899999999999985  44


Q ss_pred             CccEEEccCccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEE
Q psy14896        342 DKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC  421 (813)
Q Consensus       342 ~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C  421 (813)
                      +.|+.+..+|.|.|.++++.|.|.|+|.|+++..  ...+..+.|+|...+....-  -.++....+..+.+|+.+.|+|
T Consensus       184 ~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~--~r~S~~a~ltv~s~~~~~~~--~~fl~~p~~~~v~~g~~v~leC  259 (1381)
T KOG4221|consen  184 DSRVIVLPSGALEISGLQPSDTGEYRCVVTGGAS--QRTSNEAELTVLSDPGALNK--LVFLDEPSNAVVVEGDDVVLEC  259 (1381)
T ss_pred             CCcEEEcCCCcEEecccccCCCceEEEEEecCCc--CCccceeEEEecCCcccccc--eeeecCCCccccccCCcEEEEE
Confidence            4499999999999999999999999999998764  34467788988744331110  0112223334566677777777


Q ss_pred             EEeecCCCeeeEeecCCcCCCCceeccccceEEEcccccccceEEeCCCceEecccccccccCeEEEEEeeccCCCcEEE
Q psy14896        422 VAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEW  501 (813)
Q Consensus       422 ~~~g~p~p~i~W~~~~~~l~~~~~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W  501 (813)
                      .++|.|.|.|.|.+++..|.-+                                                          
T Consensus       260 vvs~~p~p~v~Wlrng~~i~~d----------------------------------------------------------  281 (1381)
T KOG4221|consen  260 VVSGVPKPSVKWLRNGEKISVD----------------------------------------------------------  281 (1381)
T ss_pred             EecCCCCCceEEeeCCeeeeec----------------------------------------------------------
Confidence            7776666666666665554211                                                          


Q ss_pred             eeccccccceeccccCCCCCceEEee-CCeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEEeecccccccCCCcee
Q psy14896        502 FKEDYVQDRLVANLIDPLSDKRFTLS-GGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIG  580 (813)
Q Consensus       502 ~k~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~p~~~~~~~~~~~  580 (813)
                                         ..++... .+.|.|.++ +.+|+|.|+|+|+|..... ...+.|.|..+|.|...+.....
T Consensus       282 -------------------s~rivl~g~~slliS~a-~~~dSg~YtC~Atn~~D~i-dasaev~V~a~P~~~~~p~~l~A  340 (1381)
T KOG4221|consen  282 -------------------SYRIVLVGGSSLLISNA-TDDDSGKYTCRATNTNDSI-DASAEVTVLAPPGFTKAPTTLVA  340 (1381)
T ss_pred             -------------------ceEEEEecccceEEecc-ccccCceEEEEecCCCccc-ccceEEEEEcCCCCCCCCcceee
Confidence                               1334333 578999997 9999999999999954443 33478999999999888888888


Q ss_pred             ccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEEEEeeecCccccCceeeEE
Q psy14896        581 NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLK  660 (813)
Q Consensus       581 ~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~  660 (813)
                      .++.++.|.|.+ .|.|.+.|.|||+|..+..  ++.+.+..++.|+|..+-..|+|.|.|.++|.+|.+...   ..|.
T Consensus       341 ~e~~die~ec~~-~g~p~p~v~w~kNgd~~ip--sdy~ki~~~~~lrIlgi~~sdeg~yQcvaen~~G~a~a~---a~l~  414 (1381)
T KOG4221|consen  341 HESMDIEFECPV-SGKPIPTVRWYKNGDRIIP--SDYFKIVGGGNLRILGIVKSDEGFYQCVAENDAGSAQAA---AQLE  414 (1381)
T ss_pred             eeccceeEeCCC-CCCCcceEEEEecCcccCc--ccceEecCCCCcEEEEEecccchhhhhhhccCcccccch---hhhe
Confidence            889999999999 7889999999999987433  566777777779999999999999999999999876544   3444


Q ss_pred             EccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEe-----cCCCCCeEEEEeCCcccCCCc--eeeecceEEEECCCCC
Q psy14896        661 VFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVA-----FGYPVPSYNWTRRGSPLPRNA--YFENFNRILTIPNVKV  733 (813)
Q Consensus       661 v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~-----~g~P~p~i~W~k~g~~l~~~~--~~~~~~~~L~i~~v~~  733 (813)
                      |...|.......  .--......+..-++--+.|..     .+.+-+.++|++-.......+  ...+.+-.+.+.+++.
T Consensus       415 vv~~p~~~~s~~--~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~~~rer~~~tss~g~~~tv~nl~p  492 (1381)
T KOG4221|consen  415 VVPQPASASSDL--LPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTYTVFYKVEGDVRERLQNTSSPGIQVTVQNLSP  492 (1381)
T ss_pred             eccCCcccccCc--cccCCcceecccccceeEEEeecCccccCCCcceEEEEEecCCchhhhheeccCCceEEEeeeccc
Confidence            433332222110  0001111233333333344443     344567899986433222221  1122233455555555


Q ss_pred             CCCEEEEEEEEcCCCceEEEEEEEEEcCCcccccCCceeecCCCeEEEEEEEcccCCc----eEEEEECCEecc
Q psy14896        734 EDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDV----TYSWFRNGELGH  803 (813)
Q Consensus       734 ~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~----~v~W~k~g~~l~  803 (813)
                      .-.-.+.|.|.|..|+...+..|.|..+|+   .+..  ...+.+--++|.+.+.|++    .|+|||.+....
T Consensus       493 ~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pE---gp~~--~~a~ats~~ti~v~WepP~~~n~~I~~yk~~ys~~  561 (1381)
T KOG4221|consen  493 LTMYFFRVRAKNEAGSGESSAPLKVTTQPE---GPVQ--LQAYATSPTTILVTWEPPPFGNGPITGYKLFYSED  561 (1381)
T ss_pred             ceeEEEEEeccCcccCCccCCceEEecCCC---CCcc--ccccccCcceEEEEecCCCCCCCCceEEEEEEEcC
Confidence            554555566679999999999999999998   2222  5556677889999999988    899999776655

>KOG4221|consensus

Probab=100.00  E-value=4.7e-38  Score=339.07  Aligned_cols=474  Identities=18%  Similarity=0.201  Sum_probs=325.2

Q ss_pred             CCceeeeeeecccccceEeeccccceeeeeeeCCCCCCCCCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEe
Q psy14896        150 MEPLLFICEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWF  229 (813)
Q Consensus       150 ~d~~~y~C~~~~~~~~~~~~~~~~~~~~l~v~~p~~~~~~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~  229 (813)
                      .+.|.|.|.+......    .-.+..+.|.+..      .+.|..++.+..+..|     +++.|.|.+.+.|.|.+.|.
T Consensus       111 ~~eg~Yqc~atv~~~g----si~Sr~a~v~~a~------~~~f~~~~~~~t~~~g-----~ta~f~c~vn~e~~p~i~w~  175 (1381)
T KOG4221|consen  111 VDEGVYQCLATVEDVG----SILSRTAKVALAG------LADFALQPESTTLLYG-----QTALFSCEVNAEPVPTIMWL  175 (1381)
T ss_pred             ccCceEEEEEEccccc----eeecceEEEEecc------cCccccCccceeEecC-----CcEEEEEEEcCccCceeEEe
Confidence            5889999999754222    2223333344433      3678888999998887     67999999999999999999


Q ss_pred             ecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeeeeEEeeeeecc------cccCCC
Q psy14896        230 KEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGE------FNLKRA  303 (813)
Q Consensus       230 k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~------~~~~~~  303 (813)
                      ||.+++         +..+......+|.|.|... +..|.|.|+|.|++..-...|..++|+|...+.      |...+.
T Consensus       176 kn~~pl---------~~~~r~i~lpsG~L~I~~~-qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~  245 (1381)
T KOG4221|consen  176 KNDQPL---------PLDSRVIVLPSGALEISGL-QPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPS  245 (1381)
T ss_pred             cccccc---------cCCCcEEEcCCCcEEeccc-ccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCC
Confidence            999866         2333444466999999996 999999999999998777668889998873332      445577


Q ss_pred             CceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCccEEEccCccEEEeeeeecCCeeeEEEEeeeccccCCCCCc
Q psy14896        304 PEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPF  383 (813)
Q Consensus       304 ~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~  383 (813)
                      +..+..|+.+.|.|.+ .|.|.|+|.|.|||..+.... .++.....+.|.|.+++.+|+|.|+|+|+|..-   .....
T Consensus       246 ~~~v~~g~~v~leCvv-s~~p~p~v~Wlrng~~i~~ds-~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D---~idas  320 (1381)
T KOG4221|consen  246 NAVVVEGDDVVLECVV-SGVPKPSVKWLRNGEKISVDS-YRIVLVGGSSLLISNATDDDSGKYTCRATNTND---SIDAS  320 (1381)
T ss_pred             ccccccCCcEEEEEEe-cCCCCCceEEeeCCeeeeecc-eEEEEecccceEEeccccccCceEEEEecCCCc---ccccc
Confidence            8889999999999995 899999999999999875554 777777788999999999999999999999432   22234


Q ss_pred             eeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEEEEeecCCCeeeEeecCCcCCCCceeccccceEEEcccccccc
Q psy14896        384 FPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGP  463 (813)
Q Consensus       384 ~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~~~~l~~~~~~~~~~~~l~i~~~~~~g~  463 (813)
                      +.|+|..+|.+...        .....+.++..+.|+|.+.|.|.|.+.|+|+|..+..+                    
T Consensus       321 aev~V~a~P~~~~~--------p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ips--------------------  372 (1381)
T KOG4221|consen  321 AEVTVLAPPGFTKA--------PTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPS--------------------  372 (1381)
T ss_pred             eEEEEEcCCCCCCC--------CcceeeeeccceeEeCCCCCCCcceEEEEecCcccCcc--------------------
Confidence            78888877554321        22234566667777777766666666666666554322                    


Q ss_pred             eEEeCCCceEecccccccccCeEEEEEeeccCCCcEEEeeccccccceeccccCCCCCceEEe-eCCeEEEeCCCCCCCC
Q psy14896        464 YFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL-SGGNLIINDPRQVEDR  542 (813)
Q Consensus       464 y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~d~  542 (813)
                                                                                ..+++ .++.|.|.-. -..|.
T Consensus       373 ----------------------------------------------------------dy~ki~~~~~lrIlgi-~~sde  393 (1381)
T KOG4221|consen  373 ----------------------------------------------------------DYFKIVGGGNLRILGI-VKSDE  393 (1381)
T ss_pred             ----------------------------------------------------------cceEecCCCCcEEEEE-ecccc
Confidence                                                                      12222 2223666664 68899


Q ss_pred             ceEEEEEEcCceeEEeecEEEEEeecccc------cccCCCceeccCCCceEEeCC--C--CCCCccEEEEccCCCCCcc
Q psy14896        543 GSYHCKASNKFGSIISESVQLAFGFIGEF------NLKRAPEIGNQNWGKAMFCDP--P--TNYPGVNYYWARDYFPNFV  612 (813)
Q Consensus       543 G~Y~C~a~n~~g~~~s~~~~l~v~~~p~~------~~~~~~~~~~~g~~~~l~C~~--~--~~~p~~~v~W~k~~~~~~~  612 (813)
                      |.|.|.++|..|..... +.+.+...|.+      ...+....+..-+...+.|+.  +  .+.+-+.++|++....  .
T Consensus       394 g~yQcvaen~~G~a~a~-a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~--~  470 (1381)
T KOG4221|consen  394 GFYQCVAENDAGSAQAA-AQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTYTVFYKVEG--D  470 (1381)
T ss_pred             hhhhhhhccCcccccch-hhheeccCCcccccCccccCCcceecccccceeEEEeecCccccCCCcceEEEEEecCC--c
Confidence            99999999999987444 45543322211      111111222222222233332  1  3445677889865321  1


Q ss_pred             cCCCeEEEeeCc-cEEEEeecccCCeeEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEE
Q psy14896        613 EEDKRVFVSYDG-ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVR  691 (813)
Q Consensus       613 ~~~~~~~~~~~~-~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~  691 (813)
                      ........+..| .+.+.++...-...++|.|.|..|....+   ..|.|..+|.-..            . ...+..--
T Consensus       471 ~rer~~~tss~g~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS---~pLkV~t~pEgp~------------~-~~a~ats~  534 (1381)
T KOG4221|consen  471 VRERLQNTSSPGIQVTVQNLSPLTMYFFRVRAKNEAGSGESS---APLKVTTQPEGPV------------Q-LQAYATSP  534 (1381)
T ss_pred             hhhhheeccCCceEEEeeecccceeEEEEEeccCcccCCccC---CceEEecCCCCCc------------c-ccccccCc
Confidence            111222233344 24455555555555566677888765443   6788888775211            2 45566677


Q ss_pred             EEEEecCCCCC----eEEEEeCCcccCCCc---eeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896        692 LECVAFGYPVP----SYNWTRRGSPLPRNA---YFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ  759 (813)
Q Consensus       692 l~C~~~g~P~p----~i~W~k~g~~l~~~~---~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  759 (813)
                      +.|.+...|++    .|+|||.........   +++.....++|.++...+...|.|+|.|..|...++..|.|.
T Consensus       535 ~ti~v~WepP~~~n~~I~~yk~~ys~~~~~~~~~~~~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~  609 (1381)
T KOG4221|consen  535 TTILVTWEPPPFGNGPITGYKLFYSEDDTGKELRVENNATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVR  609 (1381)
T ss_pred             ceEEEEecCCCCCCCCceEEEEEEEcCCCCceEEEecCccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEE
Confidence            89999988887    899999876554222   345556789999999999999999999999998888888887

>KOG4222|consensus

Probab=100.00  E-value=6.2e-38  Score=336.22  Aligned_cols=409  Identities=22%  Similarity=0.326  Sum_probs=302.6

Q ss_pred             cccCCCCceeecCCCeEEEecCCCCCCcceEEEeecccccc-ccCCccEEEccCccEEEeeee-----ecCCeeeEEEEe
Q psy14896        298 FNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNF-VEEDKRVFVSYDGALYFSALE-----QIDAGNYSCNVQ  371 (813)
Q Consensus       298 ~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~-~~~~~~~~~~~~~~L~i~~v~-----~~D~G~Y~C~a~  371 (813)
                      +...+....+..++.++|.|. +.|.|+|+|+|+|+|+... ...........+|+|.+..+.     ..|.|.|+|+|.
T Consensus        34 iiehp~d~vvs~~~patlnc~-asG~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~y~cvas  112 (1281)
T KOG4222|consen   34 IIEHPHDLVVSKGEPATLNCK-ASGDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGVYSCVAS  112 (1281)
T ss_pred             eEecchhhhccCCCCceeecC-CCCCCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCceeEeeec
Confidence            333456667778889999999 5899999999999996432 223333445577877765542     238999999999


Q ss_pred             eeccccCCCCCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEEEEeecCCCeeeEeecCCcCCCCceeccccc
Q psy14896        372 SKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNR  451 (813)
Q Consensus       372 n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~~~~l~~~~~~~~~~~  451 (813)
                      |..|..........+.+....  ..+       ......+..|+.+.|+|.-.                           
T Consensus       113 n~~g~avSr~a~L~vavlrdd--frv-------~prd~~~a~ge~avlEcgpP---------------------------  156 (1281)
T KOG4222|consen  113 NRLGEAVSRGASLIVAVLRDD--FRV-------SPRDVQAAVGEEAVLECGPP---------------------------  156 (1281)
T ss_pred             CccceeeecCceEEEEEechh--ccc-------CcccccccccceeEEeccCC---------------------------
Confidence            988864433322222222110  000       01112344455555555431                           


Q ss_pred             eEEEcccccccceEEeCCCceEecccccccccCeEEEEEeeccCCCcEEEeeccccccceeccccCCCCCceEEeeCCeE
Q psy14896        452 ILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNL  531 (813)
Q Consensus       452 ~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l  531 (813)
                                                              .|+|.|.++|.|+|+++.       ......+..+++|.|
T Consensus       157 ----------------------------------------~ghpeptvSw~Kdg~pl~-------~~~~~~~~lisgG~L  189 (1281)
T KOG4222|consen  157 ----------------------------------------RGHPEPTVSWVKDGKPLD-------HYDVPIIALISGGNL  189 (1281)
T ss_pred             ----------------------------------------CCCCCCcceeecCCCccc-------cccceeEEEecCCcE
Confidence                                                    344555555555554321       112234455788999


Q ss_pred             EEeCCCCCCCCceEEEEEEcCceeEEeecEEEEEeecccccccCCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCc
Q psy14896        532 IINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNF  611 (813)
Q Consensus       532 ~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~  611 (813)
                      .|.++ +..|+|.|.|+|.|.+|...+..+.|.|...|.|........+..|..+.+.|.+ .|.|.|.|.|.|++..  
T Consensus       190 lIsnv-rksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v-~GdP~P~Vrwkk~~~~--  265 (1281)
T KOG4222|consen  190 LISNV-RKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRV-GGDPQPTVRWKKDDPS--  265 (1281)
T ss_pred             EEecc-ccCCCceeeeeecccccccccccceeeeccCCccccccccceeeccccccccccc-CCCCCCceeeeccCCC--
Confidence            99997 9999999999999999999999999999999999999889999999999999999 8999999999997754  


Q ss_pred             ccCCCeEEEeeC-ccEEEEeecccCCeeEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeE
Q psy14896        612 VEEDKRVFVSYD-GALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKV  690 (813)
Q Consensus       612 ~~~~~~~~~~~~-~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v  690 (813)
                      +.. .++.+..+ .+|.|.+++..|.|.|.|.|.|..|..+..   ..++|..+|....        ...+..+..|..+
T Consensus       266 ~P~-~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~as---a~ltV~apP~f~k--------kp~dq~v~lg~~v  333 (1281)
T KOG4222|consen  266 LPR-SRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEAS---ATLTVQAPPSFGK--------KPRDQKVALGGTV  333 (1281)
T ss_pred             CCc-cceeeeeccccccccccCCCcccceeeeccccccccccc---cceEEecCccccc--------ccCccccccCceE
Confidence            333 45555555 889999999999999999999999987665   6788988886654        3444778899999


Q ss_pred             EEEEEecCCCCCeEEEEeCCcc-cCC-------Cce-eeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE--
Q psy14896        691 RLECVAFGYPVPSYNWTRRGSP-LPR-------NAY-FENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ--  759 (813)
Q Consensus       691 ~l~C~~~g~P~p~i~W~k~g~~-l~~-------~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~--  759 (813)
                      +|.|.+.|+|+|.+.|.|.|.. |..       +.+ .-...+.|+|.++...|.|.|.|...|..|+......+.+.  
T Consensus       334 t~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~  413 (1281)
T KOG4222|consen  334 TFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDV  413 (1281)
T ss_pred             EeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeecccccccccccceeEEEEee
Confidence            9999999999999999998752 211       111 11224589999999999999999999998876655555443  


Q ss_pred             -----cCCcccccCCceeecCCCeEEEEEEEcccCCceEEEEECCEeccccc
Q psy14896        760 -----AEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELGHQMT  806 (813)
Q Consensus       760 -----~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~g~~l~~~~  806 (813)
                           .+|.|...+.+.+..++..+.|.|.+.|.|.+.+.|+++|-.+...+
T Consensus       414 ~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~d  465 (1281)
T KOG4222|consen  414 LTDSRPPPIIEQGPANQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNPD  465 (1281)
T ss_pred             eccCCCCceeeecccccccccCcccccChhhhCCCCCCchhhhcccccccCC
Confidence                 23456677888888889999999999999999999999998876544

>KOG4194|consensus

Probab=99.97  E-value=2.1e-30  Score=260.50  Aligned_cols=272  Identities=23%  Similarity=0.384  Sum_probs=218.9

Q ss_pred             ccccCeEEEEEeec--cCCCcEEEeeccccccceeccccCC-CCCce---E---EeeCCeEEEeCCCCCCCCceEEEEEE
Q psy14896        480 SILNDITLSCYAGG--YPNPSYEWFKEDYVQDRLVANLIDP-LSDKR---F---TLSGGNLIINDPRQVEDRGSYHCKAS  550 (813)
Q Consensus       480 ~~g~~~~l~C~~~g--~p~~~v~W~k~~~~~~~~~~~~~~~-~~~~~---~---~~~~~~l~i~~~~~~~d~G~Y~C~a~  550 (813)
                      ..|++++|+|.+.+  ..+.++.|.++.+............ ....|   +   ....+.|.+.++ ...|.|.|.|+++
T Consensus       516 l~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nV-t~td~grYQCVvt  594 (873)
T KOG4194|consen  516 LIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNV-TFTDEGRYQCVVT  594 (873)
T ss_pred             hhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeee-ecccCceEEEEEe
Confidence            56899999999977  4556899999886433322221110 00110   0   011357899997 9999999999999


Q ss_pred             cCceeEEeecEEEEEeecccccccCCCceeccCCCceEEeCCCCCCCccEEEEccCCCCC-cccCCCeEEEee-CccEEE
Q psy14896        551 NKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPN-FVEEDKRVFVSY-DGALYF  628 (813)
Q Consensus       551 n~~g~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~-~~~~~~~~~~~~-~~~L~i  628 (813)
                      |..|+..+..+.|.|...|.|...+.......|+.+.|.|.+ .|+|.|+|.|.|+|.+. ......|..+.. +..+.|
T Consensus       595 N~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaA-tG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd~f~I  673 (873)
T KOG4194|consen  595 NHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAA-TGHPRPEIAWQKDGGTDFPAARERRLHVMPEDDVFFI  673 (873)
T ss_pred             cccCcchhheeEEEeeccCccccCcccceeecccceeeeeec-cCCCCcceeehhcCCCCCchhhhheeeecCCCCEEEE
Confidence            999999999999999999999999889999999999999999 89999999999998652 233344555554 556999


Q ss_pred             EeecccCCeeEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCC-CeEEEE
Q psy14896        629 SALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPV-PSYNWT  707 (813)
Q Consensus       629 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~-p~i~W~  707 (813)
                      .++..+|+|.|+|.|.|.+|+....   +.|.|.+.|....        +..+..|..|+++.|.|.+.|.|+ |.+.|+
T Consensus       674 tnvk~eD~GiYtC~A~n~AG~isan---AtL~V~e~p~f~~--------PL~~~~V~~get~vlqC~a~~~~a~pr~~W~  742 (873)
T KOG4194|consen  674 TNVKIEDQGIYTCTAQNVAGQISAN---ATLTVLETPSFSI--------PLEDQLVVVGETLVLQCLAEGAPADPRLEWF  742 (873)
T ss_pred             ecccccccceeEEeeeccccceeec---eEEEEecCCcccc--------cccceEEEecceEEEEEecCCCCCCcccccc
Confidence            9999999999999999999876554   7788888775432        455678999999999999999998 999999


Q ss_pred             eCCcccCCCc--eeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCCcc
Q psy14896        708 RRGSPLPRNA--YFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNF  764 (813)
Q Consensus       708 k~g~~l~~~~--~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~~  764 (813)
                      |+.++|.-..  .+...+..|++.+...+|+|.|+|+..|..|.....+.+.|...+..
T Consensus       743 k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~~~~  801 (873)
T KOG4194|consen  743 KEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQKKKC  801 (873)
T ss_pred             CCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEeecCCc
Confidence            9999986554  45667889999999999999999999999999988888888766653

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.97  E-value=2.9e-29  Score=256.55  Aligned_cols=246  Identities=21%  Similarity=0.299  Sum_probs=178.6

Q ss_pred             ccccCeEEEEEe-----eccCCCcEEEeeccccccceeccccCCCCCceEEeeCC-eEEEeCCCCCCCCceEEEEEEcCc
Q psy14896        480 SILNDITLSCYA-----GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGG-NLIINDPRQVEDRGSYHCKASNKF  553 (813)
Q Consensus       480 ~~g~~~~l~C~~-----~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~i~~~~~~~d~G~Y~C~a~n~~  553 (813)
                      .+|+.+.|.|.+     .|.|.++++|+|+|...            .......++ .|.|.++ ..+|+|.|+|.|.|..
T Consensus        39 ~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~------------~~~~~~~~g~~l~i~~~-~~~DsG~Y~C~a~N~~  105 (326)
T PHA02785         39 LENEPVILPCPQINTLSSGYNILDILWEKRGADN------------DRIIPIDNGSNMLILNP-TQSDSGIYICITKNET  105 (326)
T ss_pred             hcCCCEEEECCCccccccCCCCceEEEEECCCcc------------ceEEEccCCceEEEccc-CcccCeEEEEEEECCC
Confidence            579999999997     79999999999998321            122333344 5888886 8899999999999998


Q ss_pred             eeEEeecEEEEEeecc--cccccCCCceeccCCCceEEeCC----CCCCCccEEEEccCCCCCcccCCCeEEEeeCccEE
Q psy14896        554 GSIISESVQLAFGFIG--EFNLKRAPEIGNQNWGKAMFCDP----PTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALY  627 (813)
Q Consensus       554 g~~~s~~~~l~v~~~p--~~~~~~~~~~~~~g~~~~l~C~~----~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~  627 (813)
                      |... .++.|.|....  .+.....+..+.+|..+.|.|..    ..+.|++.|+|+++..   + ...++....++.|.
T Consensus       106 g~~~-~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~---~-~~~r~~~~~~~~L~  180 (326)
T PHA02785        106 YCDM-MSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR---L-RNKRLKQRTPGIIT  180 (326)
T ss_pred             cceE-EEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc---c-CCcceEecCCCeEE
Confidence            7653 33666664432  23334456667789999999973    1467899999998652   2 34566666678999


Q ss_pred             EEeecccCCeeEEEEEEeeecCcccc-CceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCC---e
Q psy14896        628 FSALEQIDAGNYSCNVQSKVSDTGRN-GPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVP---S  703 (813)
Q Consensus       628 i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p---~  703 (813)
                      |.+++.+|+|.|+|.|.|.+|..... ...+.|.|..+...+.+.      .+....+..|++++|.|.+.|.|.+   .
T Consensus       181 i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~------~p~~~~~~~G~~v~L~C~a~g~P~~~~~~  254 (326)
T PHA02785        181 IEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQ------LPEGVVTSIGSNLTIACRVSLRPPTTDAD  254 (326)
T ss_pred             EeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceec------CCCcEEecCCCcEEEEEEEECCCCCCCce
Confidence            99999999999999999998764322 223456664322111111      1233567789999999999998874   8


Q ss_pred             EEEEeCCcccCCCc-----eee------------ecceEEEECCCCCCCCEEEEEEEEcCCCc
Q psy14896        704 YNWTRRGSPLPRNA-----YFE------------NFNRILTIPNVKVEDQGEYICRASNDRSA  749 (813)
Q Consensus       704 i~W~k~g~~l~~~~-----~~~------------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~  749 (813)
                      |.|+|||..|....     ++.            .....|+|.+++.+|+|.|+|.|.|..|.
T Consensus       255 v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~  317 (326)
T PHA02785        255 VFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSI  317 (326)
T ss_pred             EEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCc
Confidence            99999999885421     110            01357999999999999999999998854

>KOG3515|consensus

Probab=99.97  E-value=2.1e-28  Score=260.53  Aligned_cols=570  Identities=15%  Similarity=0.160  Sum_probs=370.7

Q ss_pred             cccccEEEEeeeccC-CCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEe
Q psy14896        207 SILNDITLSCYAGGY-PNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIIS  285 (813)
Q Consensus       207 ~~g~~v~l~C~~~g~-P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s  285 (813)
                      .+|++|.|.|.+.++ |.+.+.||+.++.+           .+.+..+.+.+|..... ..+.-+.|.|+|.|..+....
T Consensus        20 ~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~~~~c~a~ns~~~~~~   87 (741)
T KOG3515|consen   20 RLGEDVPLPCRVNSNPPEIDVEWYHSTSGE-----------HGRYATIADPTLVTTGD-VRDTVAELNCRAFNSVGMPSR   87 (741)
T ss_pred             ccCCcceeeeecCCCCCCcceEEEecCccc-----------ccccccccCCceeeecc-hhhhhhhhhhhhcccccCcee
Confidence            345889999999765 56699999999753           24444455667776664 578888999999999888878


Q ss_pred             eeeEEeeeeecccccCCCCceeecCCCeEEEe-cCCCCCCcceEEEeeccccccccCCccEEE---------ccCccEEE
Q psy14896        286 ESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFC-DPPTNYPGVNYYWARDYFPNFVEEDKRVFV---------SYDGALYF  355 (813)
Q Consensus       286 ~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C-~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~---------~~~~~L~i  355 (813)
                      ..+.+.+.+++.-...........+..+.+.| ....+.|.+++.|..++.-.......+...         .....|.+
T Consensus        88 ~~~~l~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~  167 (741)
T KOG3515|consen   88 CPMILDVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQ  167 (741)
T ss_pred             cceeeccccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceee
Confidence            88889998888766666666667777788888 557888999999998876432222211111         11235889


Q ss_pred             eeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEEEEe-ecCCCeeeEe
Q psy14896        356 SALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF-GYPVPSYNWT  434 (813)
Q Consensus       356 ~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~~-g~p~p~i~W~  434 (813)
                      ...+.+|.|.|+|.|.|.............+.|..+.........     ..-..+.+|+.+.|.|.+. |+|.+.++|+
T Consensus       168 ~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~-----~~~qsF~~g~~inlvc~~~gg~P~~~~~w~  242 (741)
T KOG3515|consen  168 TVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGA-----QEQQSFTEGQTINLVCNAQGGNPSQQQTWY  242 (741)
T ss_pred             EEEEecCCceeEcccccccCccccccceeEeecccccccceecch-----hhcCcccccceEEEEehhhcCCcchhhhhc
Confidence            999999999999999985432222333344444443322222211     1225789999999999775 6899999999


Q ss_pred             ecCCcCCCCceeccccceEEEcc--------cccccceEEeCCC------ceEe-----------cccccccccCeEEEE
Q psy14896        435 RRGSPLPRNAYFENFNRILTIPN--------VKMRGPYFIKQPT------DVVF-----------DLSKRSILNDITLSC  489 (813)
Q Consensus       435 ~~~~~l~~~~~~~~~~~~l~i~~--------~~~~g~y~~~~~~------~~~~-----------~~~~~~~g~~~~l~C  489 (813)
                      ++..++...+.........++..        -...-...|.+.+      ...+           .......|+...+.|
T Consensus       243 ~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n~~~~~~~tav~~~~~~~~Ist~~~~ls~g~s~r~~c  322 (741)
T KOG3515|consen  243 KDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASNLLAASQITAVQVKPTAVPISTSDSGLSSGRSARSSC  322 (741)
T ss_pred             cccccchhhhcccCCCCCCcccccccccccccchhhhhhccccCccccceeeecccccccccccCcccccccccccccce
Confidence            99887765422222111111111        1112233365554      0000           001135678888888


Q ss_pred             Ee-eccCCCcEEEeeccccccceeccccCCCCCc-eEEeeCC-eEEEeCCCCCCCCceEEEEEEcCceeE-EeecEEEEE
Q psy14896        490 YA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDK-RFTLSGG-NLIINDPRQVEDRGSYHCKASNKFGSI-ISESVQLAF  565 (813)
Q Consensus       490 ~~-~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~-~~~~~~~-~l~i~~~~~~~d~G~Y~C~a~n~~g~~-~s~~~~l~v  565 (813)
                      .. .++|.+.+.|+|+.......    ....... ....... .+.... ....|.|.|+|.|.+..... .+....+.+
T Consensus       323 ~~sss~p~~~i~w~~~~~~~~~~----~~~~~~t~~~~~v~~~~~~~q~-~~~~~~g~v~c~a~~~~~~~~sss~~~l~~  397 (741)
T KOG3515|consen  323 VSSSSKPPAHIAWYKDTKMPKGS----QKASSKTSNMGGVAVISHYAQP-SSQQDGGQVTCPADNLELAHSSSSSFLLPV  397 (741)
T ss_pred             eccCCCCccceeeeccCcccccc----cCcccCCCcccceeeEEeeecc-cchhcCceEEccccccccccccccceeccc
Confidence            85 56888999999965321110    0000111 1111111 233334 48899999999999875432 233456667


Q ss_pred             eecccccccCCCceeccCCC-ceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCcc-EEEEeecccCCeeEEEEE
Q psy14896        566 GFIGEFNLKRAPEIGNQNWG-KAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA-LYFSALEQIDAGNYSCNV  643 (813)
Q Consensus       566 ~~~p~~~~~~~~~~~~~g~~-~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~-L~i~~~~~~d~G~Y~C~a  643 (813)
                      .+.|.+.....+..+..+.+ ....-.+....+.+.+.|.+++.++.......+.+...+- +.+.++.+.|.|.|.|+|
T Consensus       398 l~~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~y~~ta  477 (741)
T KOG3515|consen  398 LPSPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVVRVGAGAGLGSGVNVSRSDGGSYGLTA  477 (741)
T ss_pred             cCCchhhhhcccceeeccCccccccCcccCCCcccchhheecceecccccCceEEeeccccccccceeeeccCCcceeee
Confidence            77777665555544433333 2222222134456889999998775555555555555444 458889999999999999


Q ss_pred             EeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCC--CeEEEEeCCcccCCCcee--
Q psy14896        644 QSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPV--PSYNWTRRGSPLPRNAYF--  719 (813)
Q Consensus       644 ~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~--p~i~W~k~g~~l~~~~~~--  719 (813)
                      .|..|.+..   .+.+.+.+.|....+..        ......|+++.+.|.....|.  -.+.|.|.|.+.......  
T Consensus       478 tns~gg~~~---~~~~~~~~sp~~~~~~~--------~~~~~~~ns~~~~~~q~~~~~~~~m~~~~r~ge~~~~~~~~~~  546 (741)
T KOG3515|consen  478 TNSPGGAQA---YLLLGVHTSPHNHHLQD--------QVEGATGNSVDGECMQDEQPQDQQMHHEPRSGEPPSDQIDQDA  546 (741)
T ss_pred             ccCCCceee---EEeeccccCCccccccc--------ccccCCCCcccceeeccccccchhhhcccccCCCCcccccccc
Confidence            999986543   24567777776655422        245677888999999997774  379999999877443222  


Q ss_pred             ----eecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCCcccccCCce-eecCC-CeEEEEEEEcccCCceE
Q psy14896        720 ----ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDK-HMDNQ-ADLTWTCEAFGVPDVTY  793 (813)
Q Consensus       720 ----~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~~~~~~~~~-~~~~g-~~~~l~C~~~g~p~~~v  793 (813)
                          ......+.+.....--+|+|.|.+.|..-.+.....|.+..+|........+ +..+| ..++..|.+.|.|.+.+
T Consensus       547 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~pA~~~~~l~~~s~~~v~~~tp~~~~~~~g~v~as~~~~a~~~~~~~~  626 (741)
T KOG3515|consen  547 PQQQLMAHAQLLVSGNSSLQASETACVVDGSSPPAGLSLVLKAYSALIVTVRTPNMYTAQEGCVNASDDCVASGVPSTSF  626 (741)
T ss_pred             cccccCCccceeecccccccccceEEeecCCCCccccceEEEecccccccccCCceeeeccCcccccccceeccccccee
Confidence                2234568888877778899999999932335556777777777665433332 23333 37899999999999999


Q ss_pred             EEEECCEecccccccc
Q psy14896        794 SWFRNGELGHQMTDLL  809 (813)
Q Consensus       794 ~W~k~g~~l~~~~~~~  809 (813)
                      .|-|++.....+..+.
T Consensus       627 ~~~k~p~~~~~~~~~~  642 (741)
T KOG3515|consen  627 TTAKTPLQTTEGPHIR  642 (741)
T ss_pred             ecccCCCcccCCceEE
Confidence            9999999877766654

>KOG4194|consensus

Probab=99.96  E-value=4.3e-29  Score=251.13  Aligned_cols=229  Identities=23%  Similarity=0.382  Sum_probs=184.0

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeecc--CCCCeEEEeecccccccccccccccCCCccEEee------------
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGG--YPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS------------  254 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g--~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~------------  254 (813)
                      +|+|..+|.++....|     +.++|+|.+.+  .-+.++.|.|+++.+.+..     .....++...            
T Consensus       503 kpqI~~qPe~~~al~g-----~nirftC~a~sssasplsi~WR~dnevq~rv~-----ved~a~~~~q~r~~~~~e~~~~  572 (873)
T KOG4194|consen  503 KPQIVTQPETVSALIG-----ENIRFTCNAYSSSASPLSIEWRKDNEVQPRVD-----VEDFATFLSQNRNGTFGEREEY  572 (873)
T ss_pred             CcceecCchHhhhhhc-----cceEEEEEeccCCCCCceeEeeeccccCcccc-----hhcchhhhhhhccCccchhhhh
Confidence            5889999998887777     56999999966  3345899999987443221     1111111111            


Q ss_pred             CCeEEEcCCccccCCeeEEEEeecCceeeEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCcceEEEeecc
Q psy14896        255 GGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDY  334 (813)
Q Consensus       255 ~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~  334 (813)
                      .+-|.+.+ |+..|+|.|.|+++|.+|+..+..+.|+|...|.|...+.......|+.+.|.|. +.|.|.|+|.|-|+|
T Consensus       573 ~~~L~L~n-Vt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~Ca-AtG~P~PeIawqkdg  650 (873)
T KOG4194|consen  573 TAILHLDN-VTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECA-ATGHPRPEIAWQKDG  650 (873)
T ss_pred             hheeeeee-eecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeee-ccCCCCcceeehhcC
Confidence            23366667 4899999999999999999999999999999999999999999999999999998 589999999999998


Q ss_pred             cc-ccccCCccEEEccC-ccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCcccccccCCCCCCCCCcCCC
Q psy14896        335 FP-NFVEEDKRVFVSYD-GALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK  412 (813)
Q Consensus       335 ~~-~~~~~~~~~~~~~~-~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~  412 (813)
                      .+ .+.....|+.+..+ ..+.|.+|+.+|+|.|+|.|.|.+|+....   ++|+|.+.|.+..        +..+..|.
T Consensus       651 gtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isan---AtL~V~e~p~f~~--------PL~~~~V~  719 (873)
T KOG4194|consen  651 GTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISAN---ATLTVLETPSFSI--------PLEDQLVV  719 (873)
T ss_pred             CCCCchhhhheeeecCCCCEEEEecccccccceeEEeeeccccceeec---eEEEEecCCcccc--------cccceEEE
Confidence            76 44455566666664 589999999999999999999999875544   8999988765432        35567899


Q ss_pred             CCCcEEEEEEEeecCC-CeeeEeecCCcC
Q psy14896        413 AGDKVRLECVAFGYPV-PSYNWTRRGSPL  440 (813)
Q Consensus       413 ~g~~~~l~C~~~g~p~-p~i~W~~~~~~l  440 (813)
                      .|+++.|.|.+.+.|+ |.+.|+|++++|
T Consensus       720 ~get~vlqC~a~~~~a~pr~~W~k~d~pi  748 (873)
T KOG4194|consen  720 VGETLVLQCLAEGAPADPRLEWFKEDKPI  748 (873)
T ss_pred             ecceEEEEEecCCCCCCccccccCCCCce
Confidence            9999999999999887 899999988887

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.96  E-value=1.1e-27  Score=244.97  Aligned_cols=211  Identities=20%  Similarity=0.310  Sum_probs=150.4

Q ss_pred             ccccEEEEeee-----ccCCCCeEEEeecccccccccccccccCCCccEEeeCCe-EEEcCCccccCCeeEEEEeecCce
Q psy14896        208 ILNDITLSCYA-----GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGN-LIINDPRQVEDRGSYHCKASNKFG  281 (813)
Q Consensus       208 ~g~~v~l~C~~-----~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~-l~i~~~~~~~d~G~Y~C~a~n~~g  281 (813)
                      +|+.+.|.|.+     .|.|.++|.|||+|...            ...+...+|+ |+|.+. ..+|+|.|+|.|+|..|
T Consensus        40 ~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~------------~~~~~~~~g~~l~i~~~-~~~DsG~Y~C~a~N~~g  106 (326)
T PHA02785         40 ENEPVILPCPQINTLSSGYNILDILWEKRGADN------------DRIIPIDNGSNMLILNP-TQSDSGIYICITKNETY  106 (326)
T ss_pred             cCCCEEEECCCccccccCCCCceEEEEECCCcc------------ceEEEccCCceEEEccc-CcccCeEEEEEEECCCc
Confidence            34789999997     68899999999998532            1233344554 666664 88999999999999988


Q ss_pred             eeEeeeeEEeeeeecc--cccCCCCceeecCCCeEEEecC----CCCCCcceEEEeeccccccccCCccEEEccCccEEE
Q psy14896        282 SIISESVQLAFGFIGE--FNLKRAPEIGNQNWGKAMFCDP----PTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYF  355 (813)
Q Consensus       282 ~~~s~~~~l~v~~~~~--~~~~~~~~~~~~~~~~~l~C~~----~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i  355 (813)
                      .. +.++.|+|....+  +.....+..+.+|....|.|..    ..+.|.++++|+++..   + ...++....++.|.|
T Consensus       107 ~~-~~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~---~-~~~r~~~~~~~~L~i  181 (326)
T PHA02785        107 CD-MMSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR---L-RNKRLKQRTPGIITI  181 (326)
T ss_pred             ce-EEEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc---c-CCcceEecCCCeEEE
Confidence            65 4567777755432  2233455667788889999973    2467999999998653   2 345666666789999


Q ss_pred             eeeeecCCeeeEEEEeeeccccCCC-CCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEEEEeecCCC---ee
Q psy14896        356 SALEQIDAGNYSCNVQSKVSDTGRN-GPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVP---SY  431 (813)
Q Consensus       356 ~~v~~~D~G~Y~C~a~n~~g~~~~~-s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p---~i  431 (813)
                      .+++.+|+|.|+|.|.|..|..... +..+.|.|..+..     +|. +..+....+..|+.++|.|.+.|.|.+   .+
T Consensus       182 ~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~-----pp~-~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v  255 (326)
T PHA02785        182 EDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRII-----PPT-MQLPEGVVTSIGSNLTIACRVSLRPPTTDADV  255 (326)
T ss_pred             eecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCC-----Cce-ecCCCcEEecCCCcEEEEEEEECCCCCCCceE
Confidence            9999999999999999987754321 2224455543211     111 111234567789999999999998864   79


Q ss_pred             eEeecCCcCCC
Q psy14896        432 NWTRRGSPLPR  442 (813)
Q Consensus       432 ~W~~~~~~l~~  442 (813)
                      .|+++|..+..
T Consensus       256 ~W~kng~~i~~  266 (326)
T PHA02785        256 FWISNGMYYEE  266 (326)
T ss_pred             EEEECCEECCC
Confidence            99999988753

>TIGR00864 PCC polycystin cation channel protein

Probab=99.92  E-value=3.3e-21  Score=229.06  Aligned_cols=128  Identities=15%  Similarity=0.242  Sum_probs=108.3

Q ss_pred             CCCchhhhcc--CCeEEEEecCCcCCHHHHHhHcccC-CCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCC-
Q psy14896         27 LRCPQHWVQY--RDSCYRFVKSPLKTRNDAKLNCKSL-DSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNL-  102 (813)
Q Consensus        27 ~~Cp~~w~~~--~~~Cy~~~~~~~~~~~~a~~~C~~~-~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~-  102 (813)
                      ..||.||..|  +++||+|+.+. ++|.+|++.|+.+ |||||+|+|++|++||.+++.... ...+||||+|...++. 
T Consensus       316 ~~CP~GW~~f~~~g~CYk~~~e~-~TW~dAe~~C~s~GGAhLAsI~S~eEn~FL~~lv~~s~-~~~vWIGLsD~~~EG~g  393 (2740)
T TIGR00864       316 PHCPKDGEIFEENGHCFQIVPEE-AAWLDAQEQCLARAGAALAIVDNDALQNFLARKVTHSL-DRGVWIGFSDVNGAEKG  393 (2740)
T ss_pred             CCCCCCCeecCCCCEEEEEeCCc-cCHHHHHHHhhccCCeEEecCCCHHHHHHHHHHhhccC-CccEEEeeeCCCCCCce
Confidence            5799999755  89999999995 9999999999999 599999999999999999885432 3469999999988876 


Q ss_pred             -eEEcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeecc
Q psy14896        103 -WVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEASI  161 (813)
Q Consensus       103 -~~W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~~  161 (813)
                       |.|.||+.+..+.+|..+||++..+++|+.|... +  .  |+|..|.....|+|+...
T Consensus       394 ~WvWsDGS~l~~YtnW~pGEPNn~~~EdCV~l~~~-g--~--WND~~Cs~~~~FICE~~~  448 (2740)
T TIGR00864       394 PAHQGEAFEAEECEEGLAGEPHPARAEHCVRLDPR-G--Q--CNSDLCNAPHAYVCELNP  448 (2740)
T ss_pred             eeEECCCCcccCccCcCCCCCCCCCCCCCEEEcCC-C--C--EEccCCCCCeeEEeEECC
Confidence             9999999984336877789998777899988532 1  3  569999999999999864

Note: this model has been restricted to the amino half because for technical reasons.

>cd03599 CLECT_DGCR2_like C-type lectin-like domain (CTLD) of the type found in DGCR2, an integral membrane protein deleted in DiGeorge Syndrome (DGS)

Probab=99.91  E-value=3.3e-24  Score=188.86  Aligned_cols=128  Identities=20%  Similarity=0.257  Sum_probs=102.8

Q ss_pred             CchhhhccCC--eEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCC-------CCceEEEEecc--
Q psy14896         29 CPQHWVQYRD--SCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDP-------QRRKWYFGGTQ--   97 (813)
Q Consensus        29 Cp~~w~~~~~--~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~-------~~~~w~g~~~~--   97 (813)
                      ||.||..|++  +||+++.+. +||.+|+.+|+.+||+||+|++.+|++||..++.....       ...+||||.+.  
T Consensus         1 CP~gw~~~~~~~~CYk~~~~~-~tw~dA~~~C~~~Gg~Lasi~s~~e~~fl~~l~~~~~~~~~~~~~~~~~WIGL~~~~~   79 (153)
T cd03599           1 CPSGWHHYEGTASCYKVYLSG-ENYWDAVQTCQKVNGSLATFTTDQELQFILAQEWDFDERVFGRKDQCKFWVGYQYVIT   79 (153)
T ss_pred             CCCchhccCCCCeEEEEeCCc-CCHHHHHHHHHHcCCEEcCCCCHHHHHHHHHHHHhhcccccccccCCCEEEeeccccc
Confidence            9999999998  899999995 99999999999999999999999999999999854322       24689999532  


Q ss_pred             ----CCCCCeEEc-CCCCCCccccc----cCCCCCCcccCCeEEEEee-----ccccccceeeccCCCceeeeeee
Q psy14896         98 ----QSPNLWVNE-DGTNLNELDAA----FLPEPADNVQRDYLAYSFS-----QSLKRWGFERVTGMEPLLFICEA  159 (813)
Q Consensus        98 ----~~~~~~~W~-dgs~~~~~~~~----~~~~p~~~~~~~c~~~~~~-----~~~~~l~i~~~~~~d~~~y~C~~  159 (813)
                          ..+|.|.|+ ||+.+.| ..|    ..++|++ ++++|+.+...     .......|++..|.....|+|++
T Consensus        80 ~~~~~~eg~w~WsddGs~~~y-~~w~~~w~~gePn~-~~e~C~~~~~~~~~~~~~~~~~~W~d~~C~~~~~fiCq~  153 (153)
T cd03599          80 NRNHSLEGRWEVAYKGSMEVF-LPPEPIFATGMSTN-DNVFCAQLQCFQIPSLRERGLHSWHAENCYEKSSFLCKR  153 (153)
T ss_pred             ccCcccCCeEEEecCCcccee-cCccccCCCCCCCC-CCCCCeEEEeeccccccccccCeeeCccCCCCCcceeCC
Confidence                568899999 5999986 444    3337765 56899998531     11123456699999999999984

CLECT_DGCR2_like: C-type lectin-like domain (CTLD) of the type found in DGCR2, an integral membrane protein deleted in DiGeorge Syndrome (DGS). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. DGS is also known velo-cardio-facial syndrome (VCFS). DGS is a genetic abnormality that results in malformations of the heart, face, and limbs and is associated with schizophrenia and depressive disorders. DGCR2 is a candidate for involvement in the pathogenesis of DGS since the DGCR2 gene lies within the minimal DGS critical region (MDGRC) of 22q11, which when deleted gives rise to DGS, and the DGCR2 gene is in close proximity to the balanced translocation breakpoint in a DGS patient having a balanced translocation.

>cd03588 CLECT_CSPGs C-type lectin-like domain (CTLD) of the type found in chondroitin sulfate proteoglycan core proteins

Probab=99.91  E-value=5.3e-24  Score=185.98  Aligned_cols=121  Identities=19%  Similarity=0.369  Sum_probs=104.6

Q ss_pred             CchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcCC
Q psy14896         29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDG  108 (813)
Q Consensus        29 Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~dg  108 (813)
                      ||.||..|+++||+|+.+. ++|.+|++.|+.+||+||+|+|++|++||..++     ...+||||.+...++.|.|+||
T Consensus         1 Cp~gw~~~~~~Cy~~~~~~-~sw~~A~~~C~~~gg~La~i~s~~e~~fl~~~~-----~~~~WIGl~~~~~~~~~~W~dg   74 (124)
T cd03588           1 CEEGWDKFQGHCYRHFPDR-ETWEDAERRCREQQGHLSSIVTPEEQEFVNNNA-----QDYQWIGLNDRTIEGDFRWSDG   74 (124)
T ss_pred             CCccceecCCEEEEEECCc-cCHHHHHHHHHhcCCEEeccCCHHHHHHHHHhc-----cCcEEecceecCCCCceEeCCC
Confidence            9999999999999999995 999999999999999999999999999998874     2468999999888899999999


Q ss_pred             CCCCccccccCCCCCCc--ccCCeEEEEeeccccccceeeccCCCceeeeeee
Q psy14896        109 TNLNELDAAFLPEPADN--VQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEA  159 (813)
Q Consensus       109 s~~~~~~~~~~~~p~~~--~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~  159 (813)
                      +++.| .+|..++|++.  ..++|+.|....   ...|.+..|.....|+|++
T Consensus        75 ~~~~~-~~W~~~~p~~~~~~~~~Cv~~~~~~---~~~W~d~~C~~~~~fICe~  123 (124)
T cd03588          75 HPLQF-ENWRPNQPDNFFATGEDCVVMIWHE---EGEWNDVPCNYHLPFTCKK  123 (124)
T ss_pred             Ccccc-cCcCCCCCCCCCCCCCCeEEEecCC---CCeEcCCCCCCCCeeeeeC
Confidence            99987 67776688763  357899885432   2345599999999999986

CLECT_CSPGs: C-type lectin-like domain (CTLD) of the type found in chondroitin sulfate proteoglycan core proteins (CSPGs) in human and chicken aggrecan, frog brevican, and zebra fish dermacan. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Xenopus brevican is expressed in the notochord and the brain during early embryogenesis. Zebra fish dermacan is expressed in dermal bones and may play a role in dermal bone development. CSPGs do contain LINK domain(s) which bind HA. These LINK domains are considered by one classif

>cd03597 CLECT_attractin_like C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)

Probab=99.90  E-value=7.6e-24  Score=185.24  Aligned_cols=124  Identities=19%  Similarity=0.308  Sum_probs=103.5

Q ss_pred             CchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcC---CCCceEEEEeccCCCCCeEE
Q psy14896         29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQD---PQRRKWYFGGTQQSPNLWVN  105 (813)
Q Consensus        29 Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~---~~~~~w~g~~~~~~~~~~~W  105 (813)
                      ||.||..|+++||+|+... ++|.+|+.+|+.+||+||+|++++|++||.+++....   ....+||||.+.. ++.|.|
T Consensus         1 Cp~gw~~~~~~Cy~~~~~~-~tw~~A~~~C~~~g~~La~i~~~~E~~fi~~~~~~~~~~~~~~~~WIGl~d~~-~g~w~W   78 (129)
T cd03597           1 CGEGWHLVGNSCLKINTAR-ESYDNAKLYCRNLNAVLASLTTQKKVEFVLKELQKHQMTKQKLTPWVGLRKIN-VSYWCW   78 (129)
T ss_pred             CCCcCEEcCCEEEEEEcCC-CCHHHHHHHHHHcCCEEcCCCCHHHHHHHHHHHHhhcccCCCCceEEeeecCC-CCceEE
Confidence            9999999999999999995 9999999999999999999999999999998885431   2247899999875 678999


Q ss_pred             cCCCCCCc-cccccCCCCCCcccCCeEEEEeeccccccceeeccCCCc-eeeeeee
Q psy14896        106 EDGTNLNE-LDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEP-LLFICEA  159 (813)
Q Consensus       106 ~dgs~~~~-~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~-~~y~C~~  159 (813)
                      +||+++.+ +++|..++|++.  ++|+.|.....   ..|++..|... ..|+|++
T Consensus        79 ~Dgs~~~~~~~~W~~geP~~~--~~C~~~~~~~~---~~w~d~~C~~~~~~~iCe~  129 (129)
T cd03597          79 EDMSPFTNTTLQWLPGEPSDA--GFCGYLEEPAV---SGLKANPCTNPVNGSVCER  129 (129)
T ss_pred             CCCCCCCCccccCCCCCCCCc--ccEEEEccccc---CccccCCcCCCCcceeecC
Confidence            99999863 357777799863  79999854332   23559999998 6999974

CLECT_attractin_like: C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. Mouse AtrN (the product of the mahogany gene) has been shown to bind Agouti protein and to function in agouti-induced pigmentation and obesity. Mutations in AtrN have also been shown to cause spongiform encephalopathy and hypomyelination in rats and hamsters. The cytoplasmic region of mouse ALP has been shown to binds to melanocortin receptor (MCR4). Signaling through MCR4 plays a role in appetite suppression. Attractin may have therapeutic potential in the treatment of obesity. Human attractin (hAtrN) has been shown to be expressed on activated T cells and released extracellularly. The

>KOG3515|consensus

Probab=99.90  E-value=1.1e-22  Score=217.20  Aligned_cols=469  Identities=17%  Similarity=0.137  Sum_probs=312.6

Q ss_pred             CceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCccEEEccCccEEEeeeeecCCeeeEEEEeeeccccCCCCCc
Q psy14896        304 PEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPF  383 (813)
Q Consensus       304 ~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~  383 (813)
                      +..+..|+.+.|.|.+..+.|.+.+.|++.++.+.    .+.....+.+|......++.-+.|.|+|.|..+.  .....
T Consensus        16 ~~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~--~~~~~   89 (741)
T KOG3515|consen   16 TVGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH----GRYATIADPTLVTTGDVRDTVAELNCRAFNSVGM--PSRCP   89 (741)
T ss_pred             ChhhccCCcceeeeecCCCCCCcceEEEecCcccc----cccccccCCceeeecchhhhhhhhhhhhcccccC--ceecc
Confidence            33778899999999998888999999999998753    5556667778999998888889999999998543  33334


Q ss_pred             eeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEEEEe--ecCCCeeeEeecCCcCCCC--------------ceec
Q psy14896        384 FPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF--GYPVPSYNWTRRGSPLPRN--------------AYFE  447 (813)
Q Consensus       384 ~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~~--g~p~p~i~W~~~~~~l~~~--------------~~~~  447 (813)
                      ..+.+..++-        -.+.........+..+.+.|.+.  +.|.+.+.|..++......              ....
T Consensus        90 ~~l~v~~~pa--------~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~  161 (741)
T KOG3515|consen   90 MILDVDYPPA--------CLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTE  161 (741)
T ss_pred             eeeccccCcc--------ccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceecc
Confidence            5555555432        22223334567888999999664  5688899998876543221              1122


Q ss_pred             cccceEEEcccccccceEEeCCCceEec-------------------------ccccccccCeEEEEEee-ccCCCcEEE
Q psy14896        448 NFNRILTIPNVKMRGPYFIKQPTDVVFD-------------------------LSKRSILNDITLSCYAG-GYPNPSYEW  501 (813)
Q Consensus       448 ~~~~~l~i~~~~~~g~y~~~~~~~~~~~-------------------------~~~~~~g~~~~l~C~~~-g~p~~~v~W  501 (813)
                      .....+.+..-...|.|+|.+-+.....                         ...-.+|+.+.|.|.+. |+|.+.++|
T Consensus       162 ~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w  241 (741)
T KOG3515|consen  162 PSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTW  241 (741)
T ss_pred             ccceeeEEEEecCCceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhh
Confidence            2233444455556899999876531110                         01225678999999875 589999999


Q ss_pred             eeccccccceeccccCCCCCceEEeeCCeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEEeecccc-cccCCCcee
Q psy14896        502 FKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEF-NLKRAPEIG  580 (813)
Q Consensus       502 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~p~~-~~~~~~~~~  580 (813)
                      +++..+....   .......... ....++.+..- ..++.-...|.+.| .+.   ....+.+..++.. .+.......
T Consensus       242 ~~~s~~~~~~---sl~~~~~sg~-~v~~~~~~~~~-r~~~~~~~kc~a~n-~~~---~~~~tav~~~~~~~~Ist~~~~l  312 (741)
T KOG3515|consen  242 YKDSRPQSES---SLLSQEPSGD-TVSSTLVLRVG-RQDLQAQLKCKASN-LLA---ASQITAVQVKPTAVPISTSDSGL  312 (741)
T ss_pred             ccccccchhh---hcccCCCCCC-ccccccccccc-ccchhhhhhccccC-ccc---cceeeecccccccccccCccccc
Confidence            9998654221   0000000000 01123333332 44555677899998 221   2234444444432 233333446


Q ss_pred             ccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEE-EeeCc-----cEEEEeecccCCeeEEEEEEeeecCccccC
Q psy14896        581 NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVF-VSYDG-----ALYFSALEQIDAGNYSCNVQSKVSDTGRNG  654 (813)
Q Consensus       581 ~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~-~~~~~-----~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  654 (813)
                      ..|+...+.|....++|.+.+.|+|+.... .....-.. ....+     .+........|.|.|+|.|.|..+. ...+
T Consensus       313 s~g~s~r~~c~~sss~p~~~i~w~~~~~~~-~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~-~~ss  390 (741)
T KOG3515|consen  313 SSGRSARSSCVSSSSKPPAHIAWYKDTKMP-KGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELA-HSSS  390 (741)
T ss_pred             ccccccccceeccCCCCccceeeeccCccc-ccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccc-cccc
Confidence            778888999988789999999999965321 11100000 01111     2566677889999999999998844 4445


Q ss_pred             ceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCC-CCeEEEEeCCcccCCCce----eeecceEEEEC
Q psy14896        655 PFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYP-VPSYNWTRRGSPLPRNAY----FENFNRILTIP  729 (813)
Q Consensus       655 ~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P-~p~i~W~k~g~~l~~~~~----~~~~~~~L~i~  729 (813)
                      ..+.+.+.++|......++.       ....+++.....-.+.|.| .+.+.|.+++.++.....    .-.....+.+.
T Consensus       391 s~~~l~~l~~p~~L~~~~~~-------v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~~~~s~~  463 (741)
T KOG3515|consen  391 SSFLLPVLPSPAFLVRHKTA-------VVAMEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVVRVGAGAGLGSGV  463 (741)
T ss_pred             cceeccccCCchhhhhcccc-------eeeccCccccccCcccCCCcccchhheecceecccccCceEEeeccccccccc
Confidence            66778888888776554443       3345555555554455666 468999999988866542    12223345577


Q ss_pred             CCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCCcccccCCceeecCCCeEEEEEEEcccCC--ceEEEEECCEeccc
Q psy14896        730 NVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPD--VTYSWFRNGELGHQ  804 (813)
Q Consensus       730 ~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~--~~v~W~k~g~~l~~  804 (813)
                      ++...|.|.|.|.|+|..|.+...+.+.+...|.+......+....|+++-+.|.....|.  -.+.|.|.|.+...
T Consensus       464 ~v~~~d~g~y~~tatns~gg~~~~~~~~~~~sp~~~~~~~~~~~~~~ns~~~~~~q~~~~~~~~m~~~~r~ge~~~~  540 (741)
T KOG3515|consen  464 NVSRSDGGSYGLTATNSPGGAQAYLLLGVHTSPHNHHLQDQVEGATGNSVDGECMQDEQPQDQQMHHEPRSGEPPSD  540 (741)
T ss_pred             eeeeccCCcceeeeccCCCceeeEEeeccccCCcccccccccccCCCCcccceeeccccccchhhhcccccCCCCcc
Confidence            8999999999999999999999999999999999886666667778888999999988774  35999999988744

>cd03589 CLECT_CEL-1_like C-type lectin-like domain (CTLD) of the type found in CEL-1 from Cucumaria echinata and Echinoidin from Anthocidaris crassispina

Probab=99.89  E-value=3.5e-23  Score=185.69  Aligned_cols=128  Identities=19%  Similarity=0.346  Sum_probs=108.9

Q ss_pred             CchhhhccCCeEEEEecCCcCCHHHHHhHcccC-----CCeEeeeCCHhHHHHHHHHhhhc---CCCCceEEEEeccCCC
Q psy14896         29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSL-----DSDLANVNDADEHGFIMYQLFWQ---DPQRRKWYFGGTQQSP  100 (813)
Q Consensus        29 Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~-----~~~L~~i~~~~e~~~i~~~~~~~---~~~~~~w~g~~~~~~~  100 (813)
                      ||.||..|+++||+|+... ++|.+|++.|+.+     +|+||+|+|++|++||..++...   .....+||||.+...+
T Consensus         1 Cp~gw~~~~~~Cy~~~~~~-~~w~~A~~~C~~~~~~g~~~~La~i~s~~e~~~l~~~~~~~~~~~~~~~~WiGl~~~~~~   79 (137)
T cd03589           1 CPTFWTAFGGYCYRFFGDR-LTWEEAELRCRSFSIPGLIAHLVSIHSQEENDFVYDLFESSRGPDTPYGLWIGLHDRTSE   79 (137)
T ss_pred             CCcchhhhCCEEEEEeCCC-cCHHHHHHHHHhhcCCCCCceEcccCCHHHHHHHHHHHhhccccCCCCcEEEeeecCCcc
Confidence            9999999999999999995 9999999999997     69999999999999999988543   2345899999998889


Q ss_pred             CCeEEcCCCCCCccccccCCCCCCcc-cCCeEEEEeeccccccceeeccCCCceeeeeee
Q psy14896        101 NLWVNEDGTNLNELDAAFLPEPADNV-QRDYLAYSFSQSLKRWGFERVTGMEPLLFICEA  159 (813)
Q Consensus       101 ~~~~W~dgs~~~~~~~~~~~~p~~~~-~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~  159 (813)
                      +.|.|.||+++.| .+|..++|++.. .++|+.|..... ....|.+..|.....|+|+.
T Consensus        80 ~~~~W~dG~~~~~-~~W~~~~P~~~~~~~~C~~~~~~~~-~~~~W~d~~C~~~~~fIC~~  137 (137)
T cd03589          80 GPFEWTDGSPVDF-TKWAGGQPDNYGGNEDCVQMWRRGD-AGQSWNDMPCDAVFPYICKM  137 (137)
T ss_pred             CceEeCCcCcCCc-CCcCCCCCCCCCCCCCceeeecCCC-CCCeecCCCCCCCcceeeeC
Confidence            9999999999987 577666998754 679999866431 13456699999999999984

CLECT_CEL-1_like: C-type lectin-like domain (CTLD) of the type found in CEL-1 from Cucumaria echinata and Echinoidin from Anthocidaris crassispina. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. The CEL-1 CTLD binds three calcium ions and has a high specificity for N-acteylgalactosamine (GalNAc). CEL-1 exhibits strong cytotoxicity which is inhibited by GalNAc. This protein may play a role as a toxin defending against predation. Echinoidin is found in the coelomic fluid of the sea urchin and is specific for GalBeta1-3GalNAc. Echinoidin has a cell adhesive activity towards human cancer cells which is not mediated through the CTLD. Both CEL-1 and Echinoidin are multimeric proteins comprised of multiple dimers linked by disulfide bonds.

>PHA02642 C-type lectin-like protein; Provisional

Probab=99.89  E-value=9.5e-23  Score=185.64  Aligned_cols=124  Identities=18%  Similarity=0.307  Sum_probs=104.1

Q ss_pred             cccccccCCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCC
Q psy14896         20 QTIDELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQS   99 (813)
Q Consensus        20 ~~~~~~~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~   99 (813)
                      +........||.||..|+++||+|+.+. ++|.+|+..|+.+||+||+|++++|++||.++.    ....+||||++...
T Consensus        79 ~~~~~k~~~CP~gW~~~~~kCYyfs~~~-ksW~eA~~~C~s~ga~La~I~seeE~~FL~~~~----~~~~yWIGLsd~~~  153 (216)
T PHA02642         79 QEPTIKYVTCPKGWIGFGYKCFYFSEDS-KNWTFGNTFCTSLGATLVKVETEEELNFLKRYK----DSSDHWIGLNRESS  153 (216)
T ss_pred             cCCCcccCCCCCcCEEECCEEEEEeCcc-cCHHHHHHHHhhCCCeEeeECCHHHHHHHHHhh----cCCeEEEEeEeCCC
Confidence            3344567899999999999999999994 999999999999999999999999999998874    23469999999999


Q ss_pred             CCCeEEcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeecc
Q psy14896        100 PNLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEASI  161 (813)
Q Consensus       100 ~~~~~W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~~  161 (813)
                      ++.|.|+||++++. . +|..     +.++|+.+...      .|.+..|.....|+|+...
T Consensus       154 e~~W~WvDGS~~n~-~-~~i~-----G~g~CAyLs~~------~i~s~~C~~~~~wIC~K~l  202 (216)
T PHA02642        154 NHPWKWADNSNYNA-S-FVIT-----GTGECAYLNDI------RISSSRVYANRKWICSKTY  202 (216)
T ss_pred             CCceEECCCCccCc-c-eecc-----CCCceEEEeCC------ceEccCcCCCceEEeeeec
Confidence            99999999999986 2 3322     24789876432      3449999999999999964

>cd03590 CLECT_DC-SIGN_like C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)

Probab=99.89  E-value=1e-22  Score=179.95  Aligned_cols=122  Identities=25%  Similarity=0.465  Sum_probs=107.1

Q ss_pred             CchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcCC
Q psy14896         29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDG  108 (813)
Q Consensus        29 Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~dg  108 (813)
                      ||.||..|+++||+|+... ++|.+|+..|+.+||+||+|+|++|++||.+++.   ....+||||.+...++.|.|.||
T Consensus         1 Cp~~w~~~~~~Cy~~~~~~-~tw~~A~~~C~~~g~~La~i~s~~e~~~l~~~~~---~~~~~WiGl~~~~~~~~~~W~dg   76 (126)
T cd03590           1 CPTNWKSFQSSCYFFSTEK-KSWEESRQFCEDMGAHLVIINSQEEQEFISKILS---GNRSYWIGLSDEETEGEWKWVDG   76 (126)
T ss_pred             CCCCceEeCCEEEEEeCCC-cCHHHHHHHHHhCCCEEEeeCCHHHHHHHHHHhC---CCCCEEEeeecCCCcCCeEecCC
Confidence            9999999999999999994 9999999999999999999999999999999974   34689999999888899999999


Q ss_pred             CCC--CccccccCCCCCCcc--cCCeEEEEeeccccccceeeccCCCceeeeeee
Q psy14896        109 TNL--NELDAAFLPEPADNV--QRDYLAYSFSQSLKRWGFERVTGMEPLLFICEA  159 (813)
Q Consensus       109 s~~--~~~~~~~~~~p~~~~--~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~  159 (813)
                      +++  .+ .+|..++|++..  .++|+.|....    ..|.+..|.+...|+|++
T Consensus        77 ~~~~~~~-~~W~~~~p~~~~~~~~~C~~~~~~~----~~w~~~~C~~~~~fiCek  126 (126)
T cd03590          77 TPLNSSK-TFWHPGEPNNWGGGGEDCAELVYDS----GGWNDVPCNLEYRWICEK  126 (126)
T ss_pred             CCCCCcc-CCcCCCcCCCCCCCCCCCEEEECCC----CcEeCcCCCCCEeeeeeC
Confidence            999  55 566666888753  68999996643    445599999999999984

CLECT_DC-SIGN_like: C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR). This group also contains proteins similar to hepatic asialoglycoprotein receptor (ASGP-R) and langerin in human. These proteins are type II membrane proteins with a CTLD ectodomain. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. DC-SIGN is thought to mediate the initial contact between dendritic cells and resting T cells, and may also mediate the rolling of DCs on epithelium. DC-SIGN and DC-SIGNR bind to oligosaccharides present on human tissues, as well as, on path

>cd03594 CLECT_REG-1_like C-type lectin-like domain (CTLD) of the type found in Human REG-1 (lithostathine), REG-4, and avian eggshell-specific proteins: ansocalcin, structhiocalcin-1(SCA-1), and -2(SCA-2)

Probab=99.89  E-value=8.3e-23  Score=181.09  Aligned_cols=126  Identities=22%  Similarity=0.367  Sum_probs=107.4

Q ss_pred             CchhhhccCCeEEEEecCCcCCHHHHHhHcccC--CCeEeeeCCHhHHHHHHHHhhhcC-CCCceEEEEeccCCCCCeEE
Q psy14896         29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSL--DSDLANVNDADEHGFIMYQLFWQD-PQRRKWYFGGTQQSPNLWVN  105 (813)
Q Consensus        29 Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~--~~~L~~i~~~~e~~~i~~~~~~~~-~~~~~w~g~~~~~~~~~~~W  105 (813)
                      ||.||..|+++||+|+... ++|.+|+++|+.+  ||+||+|++++|++||..++.... ....+||||.+...++.|.|
T Consensus         1 Cp~gw~~~~~~Cy~~~~~~-~tw~~A~~~C~~~~~g~~La~i~s~~e~~~l~~~~~~~~~~~~~~WiGl~~~~~~~~~~W   79 (129)
T cd03594           1 CPKGWLPYKGNCYGYFRQP-LSWSDAELFCQKYGPGAHLASIHSPAEAAAIASLISSYQKAYQPVWIGLHDPQQSRGWEW   79 (129)
T ss_pred             CCCCCEecCCEeeeEeccC-cCHHHHHHHHHhcCCCceEcccCCHHHHHHHHHHHHhhccCCccEEEeeccCCCCCceEe
Confidence            9999999999999999995 9999999999999  499999999999999999886543 34579999999888889999


Q ss_pred             cCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeee
Q psy14896        106 EDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEA  159 (813)
Q Consensus       106 ~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~  159 (813)
                      .||+++.| .+|..++| ....++|+.|....+  .+.|.+..|.....|+|+.
T Consensus        80 ~dg~~~~~-~~W~~~~p-~~~~~~Cv~~~~~~~--~~~W~~~~C~~~~~fICe~  129 (129)
T cd03594          80 SDGSKLDY-RSWDRNPP-YARGGYCAELSRSTG--FLKWNDANCEERNPFICKY  129 (129)
T ss_pred             CCCCccee-cccCCCCC-CCCCCCceEEEecCC--CCeEECCCCCCCceeeeeC
Confidence            99999987 56666688 334689999976533  2456699999999999973

CLECT_REG-1_like: C-type lectin-like domain (CTLD) of the type found in Human REG-1 (lithostathine), REG-4, and avian eggshell-specific proteins: ansocalcin, structhiocalcin-1(SCA-1), and -2(SCA-2). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. REG-1 is a proliferating factor which participates in various kinds of tissue regeneration including pancreatic beta-cell regeneration, regeneration of intestinal mucosa, regeneration of motor neurons, and perhaps in tissue regeneration of damaged heart. REG-1 may play a role on the pathophysiology of Alzheimer's disease and in the development of gastric cancers. Its expression is correlated with reduced survival from early-stage colorectal cancer. REG-1 also binds and aggregates

>cd03593 CLECT_NK_receptors_like C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

Probab=99.88  E-value=2.8e-22  Score=173.99  Aligned_cols=116  Identities=28%  Similarity=0.482  Sum_probs=101.9

Q ss_pred             CchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcCC
Q psy14896         29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDG  108 (813)
Q Consensus        29 Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~dg  108 (813)
                      ||.||..|+++||+|+... ++|.+|+..|+.+||+||+|+|++|++||.+++    ....+|||+.+...++.|.|.||
T Consensus         1 Cp~gw~~~~~~Cy~~~~~~-~~w~~A~~~C~~~g~~La~i~s~~e~~~l~~~~----~~~~~WiGl~~~~~~~~~~W~dg   75 (116)
T cd03593           1 CPKDWICYGNKCYYFSMEK-KTWNESKEACSSKNSSLLKIDDEEELEFLQSQI----GSSSYWIGLSREKSEKPWKWIDG   75 (116)
T ss_pred             CCCcCEEeCCEEEEEEcCC-CCHHHHHHHHHhCCCcEEEECCHHHHHHHHHhc----CCCceEEEEeecCCCCCeEccCC
Confidence            9999999999999999995 999999999999999999999999999999987    34578999999988999999999


Q ss_pred             CCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeee
Q psy14896        109 TNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEA  159 (813)
Q Consensus       109 s~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~  159 (813)
                      +++.   +|+..+|++ ..++|+.|...      .|.+..|.....|+|++
T Consensus        76 ~~~~---~~~~~~~~~-~~~~C~~~~~~------~w~~~~C~~~~~~IC~k  116 (116)
T cd03593          76 SPLN---NLFNIRGST-KSGNCAYLSST------GIYSEDCSTKKRWICEK  116 (116)
T ss_pred             Cccc---ccccccCCC-CCCCceEEcCC------cEEcccCCcCceeeeeC
Confidence            9987   577776655 56899988543      34599999999999974

CLECT_NK_receptors_like: C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs), including proteins similar to oxidized low density lipoprotein (OxLDL) receptor (LOX-1), CD94, CD69, NKG2-A and -D, osteoclast inhibitory lectin (OCIL), dendritic cell-associated C-type lectin-1 (dectin-1), human myeloid inhibitory C-type lectin-like receptor (MICL), mast cell-associated functional antigen (MAFA), killer cell lectin-like receptors: subfamily F, member 1 (KLRF1) and subfamily B, member 1 (KLRB1), and lys49 receptors. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. NKRs are variously associated with activation or inhibition of natural killer (NK) cells. Activating NKRs stimulate cytolysis by NK cells of virally infected or transformed cells; inhibitory NKRs block cytolysis up

>cd03596 CLECT_tetranectin_like C-type lectin-like domain (CTLD) of the type found in the tetranectin (TN), cartilage derived C-type lectin (CLECSF1), and stem cell growth factor (SCGF)

Probab=99.87  E-value=3.5e-22  Score=176.08  Aligned_cols=124  Identities=17%  Similarity=0.221  Sum_probs=105.1

Q ss_pred             CchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcC-CCCceEEEEeccCCCCCeEEcC
Q psy14896         29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQD-PQRRKWYFGGTQQSPNLWVNED  107 (813)
Q Consensus        29 Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~-~~~~~w~g~~~~~~~~~~~W~d  107 (813)
                      ||.||.. +++||+|+... ++|.+|++.|+.+||+||+|+|.+|++||.+++.... ....+||||++...++.|.|.|
T Consensus         1 c~~g~~~-~~~CY~~~~~~-~~w~~A~~~C~~~g~~La~i~s~~e~~~l~~~~~~~~~~~~~~WiGl~~~~~~~~w~w~d   78 (129)
T cd03596           1 CLKGTKI-HKKCYLVSEET-KHYHEASEDCIARGGTLATPRDSDENDALRDYVKASVPGNWEVWLGINDMVAEGKWVDVN   78 (129)
T ss_pred             CCCCcEE-CCEEEEEeccc-CCHHHHHHHHHhcCCeEecCCCHHHHHHHHHHHHhccCCCCcEEEeccccCccCeEEeCC
Confidence            9999855 78999999995 9999999999999999999999999999998875432 3358999999999999999999


Q ss_pred             CCCCCccccccC---CCCCCcccCCeEEEEeeccccccceeeccCCCceeeeee
Q psy14896        108 GTNLNELDAAFL---PEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICE  158 (813)
Q Consensus       108 gs~~~~~~~~~~---~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~  158 (813)
                      |+++.| .+|..   ++|++...++|+.|....   ...|.+..|.....|+|+
T Consensus        79 G~~~~~-~~W~~~~~~~p~~~~~~~Cv~l~~~~---~~~W~d~~C~~~~~fICe  128 (129)
T cd03596          79 GSPISY-FNWEREITAQPDGGKRENCVALSSSA---QGKWFDEDCRREKPYVCE  128 (129)
T ss_pred             CCCccc-cccCCCCCCCCCCCCCCCCEEEccCC---CCcCcCccCCCCCceecc
Confidence            999997 67776   578765568999986542   234559999999999997

CLECT_tetranectin_like: C-type lectin-like domain (CTLD) of the type found in the tetranectin (TN), cartilage derived C-type lectin (CLECSF1), and stem cell growth factor (SCGF). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. TN binds to plasminogen and stimulates activation of plasminogen, playing a key role in the regulation of proteolytic processes. The TN CTLD binds two calcium ions. Its calcium free form binds to various kringle-like protein ligands. Two residues involved in the coordination of calcium are critical for the binding of TN to the fourth kringle (K4) domain of plasminogen (Plg K4). TN binds the kringle 1-4 form of angiostatin (AST K1-4). AST K1-4 is a fragment of Plg, commonly found in cancer tissues. TN inhibits the bin

>PHA02953 IEV and EEV membrane glycoprotein; Provisional

Probab=99.87  E-value=1e-21  Score=175.81  Aligned_cols=119  Identities=13%  Similarity=0.262  Sum_probs=94.9

Q ss_pred             ccCCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeE
Q psy14896         25 LELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWV  104 (813)
Q Consensus        25 ~~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~  104 (813)
                      ....||.||..|+++||+++... ++|.+|++.|+.+||+|++++  +|+.|+..+.    ....+||||+|  .++.|.
T Consensus        43 ~~~~CP~GW~~~~~~CYk~f~~~-~tW~~A~~~C~~~Gg~L~~~~--~e~~fv~~~~----~~~~~WIGL~d--~eg~W~  113 (170)
T PHA02953         43 FPSACAKGWIPYDNYCYLDTNIQ-LSTYGAVYLCNKYRARLPKPN--FRHLKVLSLT----YGKDFWVSLKK--KNNRWL  113 (170)
T ss_pred             ccCcCcccChhhCCEEEEEECCc-CCHHHHHHHHHhcCCCCCCCc--HHHHHHHHhc----cCCCEEEeEEC--CCCceE
Confidence            44679999999999999999995 999999999999999998877  6788887764    23468999998  678999


Q ss_pred             EcCC-CCCCccccc-----cCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        105 NEDG-TNLNELDAA-----FLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       105 W~dg-s~~~~~~~~-----~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      |.|| +.++| .+|     |.++|++ ..++|+.+..  +  .  |.+..|.....|+|+..
T Consensus       114 w~Dggs~~~y-~~~~~~~~w~~~~~~-~~e~C~~~~~--~--~--W~d~~C~~~~~fICqk~  167 (170)
T PHA02953        114 DINTNKTVDM-NKNTELKKIKSKTKN-DNEACYIYKS--G--E--LKETVCNSVNYIICVKR  167 (170)
T ss_pred             eCCCCeeecc-ccccccccccCCCCC-CCCCceEEeC--C--e--EEeccCCCCcEEEEEEe
Confidence            9996 55554 332     4455543 5789987742  1  3  55999999999999884

>PHA03097 C-type lectin-like protein; Provisional

Probab=99.87  E-value=2.2e-21  Score=172.77  Aligned_cols=118  Identities=18%  Similarity=0.284  Sum_probs=96.0

Q ss_pred             ccccccCCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCC
Q psy14896         21 TIDELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSP  100 (813)
Q Consensus        21 ~~~~~~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~  100 (813)
                      ..+.....||.||..|+++||+|+.+. ++|.+|+.+|+++||+||+|++++|++||.+++    ....+||||++... 
T Consensus        38 ~~~~~~~~CP~gW~~~~~~CY~~s~~~-~sW~~A~~~C~~~g~~La~I~~~~E~~fi~~~~----~~~~~WIGL~d~~~-  111 (157)
T PHA03097         38 PGDRSGLNCRSGWVGYNNKCYTFSENI-TNKHLAIERCADMDGILTLIDDQKEVLFVSRYK----GGQDLWIGIEKKKG-  111 (157)
T ss_pred             CCCCcCCCCCCCceeeCCEEEEEecCC-CcHHHHHHHHHhCCCEEeeeCCHHHHHHHHHhc----CCCCEEEeeecCCC-
Confidence            344455679999999999999999995 999999999999999999999999999999875    33479999998643 


Q ss_pred             CCeEEcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        101 NLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       101 ~~~~W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                          |.||+.+..  +|+..    ...++|+.+...    .  |.+..|.....|+|+..
T Consensus       112 ----W~dgs~~~~--~~~~~----~~~e~Cv~i~~~----~--w~d~~C~~~~~~ICek~  155 (157)
T PHA03097        112 ----DDDDREVLD--KVVKP----PKSGKCAYLKDK----T--IISSNCNATKGWICFDR  155 (157)
T ss_pred             ----ccCCCcccc--cccCC----CCCCCEEEEECC----c--EEeCCCCCCeeEEEeec
Confidence                999997653  44332    135789877442    2  55999999999999985

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.85  E-value=9.1e-21  Score=180.85  Aligned_cols=156  Identities=19%  Similarity=0.322  Sum_probs=114.1

Q ss_pred             CCceeccCCCceEEeCCCCCCC-----------ccEEEEccCCCCCcccC-CCe--------EE-EeeCccEEEEeeccc
Q psy14896        576 APEIGNQNWGKAMFCDPPTNYP-----------GVNYYWARDYFPNFVEE-DKR--------VF-VSYDGALYFSALEQI  634 (813)
Q Consensus       576 ~~~~~~~g~~~~l~C~~~~~~p-----------~~~v~W~k~~~~~~~~~-~~~--------~~-~~~~~~L~i~~~~~~  634 (813)
                      .+..+.+|+++.|.|.+ .+.|           .+.|.|+|++....... +.+        .. ...+++|.|.+++.+
T Consensus        30 ~~~~v~eGe~v~L~C~~-~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~  108 (227)
T PHA02826         30 TPVYAKFGDPMVLLCTG-KHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINI  108 (227)
T ss_pred             ceEEecCCCCEEEEccc-cccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChH
Confidence            34567889999999998 4444           35899999875321111 111        00 123568999999999


Q ss_pred             CCeeEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEec-----CCCCCeEEEEeC
Q psy14896        635 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF-----GYPVPSYNWTRR  709 (813)
Q Consensus       635 d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~-----g~P~p~i~W~k~  709 (813)
                      |+|.|+|+|.|..|..   ...+.|.|..++              .+..+.+|++++|.|.+.     |.|.|.|+|+||
T Consensus       109 DsG~Y~C~a~N~~~~~---~~~i~L~V~~~~--------------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKn  171 (227)
T PHA02826        109 DEGIYICTISSGNICE---ESTIRLTFDSGT--------------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKN  171 (227)
T ss_pred             HCEEEEEEEEECCcce---EEEEEEEEecCC--------------ccceEecCCCEEEEeeCCCCccccCCCceEEEEEC
Confidence            9999999999977543   334566664321              124567899999999986     346789999999


Q ss_pred             CcccCCCceee--ecceEEEECCCCCCCCEEEEEEEEcCCCc
Q psy14896        710 GSPLPRNAYFE--NFNRILTIPNVKVEDQGEYICRASNDRSA  749 (813)
Q Consensus       710 g~~l~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~  749 (813)
                      |++|..+.++.  ..+++|.|.+++.+|+|.|+|+|...++.
T Consensus       172 g~~l~~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~~g  213 (227)
T PHA02826        172 GNIVLYTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRFNKNS  213 (227)
T ss_pred             CEECCCCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEEeECC
Confidence            99997665543  34568999999999999999999987643

>cd03598 CLECT_EMBP_like C-type lectin-like domain (CTLD) of the type found in the human proteins, eosinophil major basic protein (EMBP) and prepro major basic protein homolog (MBPH)

Probab=99.83  E-value=4.7e-20  Score=159.17  Aligned_cols=113  Identities=23%  Similarity=0.310  Sum_probs=95.4

Q ss_pred             CeEEEEecCCcCCHHHHHhHcccC-CCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEecc--CCCCCeEEcCCCCCCcc
Q psy14896         38 DSCYRFVKSPLKTRNDAKLNCKSL-DSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQ--QSPNLWVNEDGTNLNEL  114 (813)
Q Consensus        38 ~~Cy~~~~~~~~~~~~a~~~C~~~-~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~--~~~~~~~W~dgs~~~~~  114 (813)
                      ++||+|+..+ ++|.+|++.|+.+ ||+||+|+|++|++||.+++... ....+||||.+.  ..++.|.|.||+++.| 
T Consensus         1 ~~Cy~~~~~~-~t~~~A~~~C~~~~g~~La~i~s~~e~~~l~~~~~~~-~~~~~WiGl~~~~~~~~~~~~W~dg~~~~y-   77 (117)
T cd03598           1 GRCYRFVKSP-RTFRDAQVICRRCYRGNLASIHSFAFNYRVQRLVSTL-NQAQVWIGGIITGKGRCRRFSWVDGSVWNY-   77 (117)
T ss_pred             CceEEEecCC-CCHHHHHHHhhcCCCceEeeecChhHhHHHHHHHhCC-CCCCEEEeeEcCCCCcCCeeEeCCCCccCc-
Confidence            5799999995 9999999999994 99999999999999999988543 345799999987  5678999999999998 


Q ss_pred             ccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeee
Q psy14896        115 DAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICE  158 (813)
Q Consensus       115 ~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~  158 (813)
                      .+|..++|++ ..++|+.|....+  .|  .+..|.....|+|+
T Consensus        78 ~~W~~g~p~~-~~~~Cv~~~~~~g--~W--~~~~C~~~~~fiC~  116 (117)
T cd03598          78 AYWAPGQPGN-RRGHCVELCTRGG--HW--RRAHCKLRRPFICS  116 (117)
T ss_pred             CCCCCCCCCC-CCCCcEEEeCCCC--eE--CCCcCCCCceeeec
Confidence            5766668887 5678999865422  44  49999999999997

CLECT_EMBP_like: C-type lectin-like domain (CTLD) of the type found in the human proteins, eosinophil major basic protein (EMBP) and prepro major basic protein homolog (MBPH). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. Eosinophils and basophils carry out various functions in allergic, parasitic, and inflammatory diseases. EMBP is stored in eosinophil crystalloid granules and is released upon degranulation. EMBP is also expressed in basophils. The proform of EMBP is expressed in placental X cells and breast tissue and increases significantly during human pregnancy. EMBP has cytotoxic properties and damages bacteria and mammalian cells, in vitro, as well as, helminth parasites. EMBP deposition has been observed in the inflamed tissue of all

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.81  E-value=2.8e-19  Score=170.65  Aligned_cols=162  Identities=17%  Similarity=0.240  Sum_probs=112.9

Q ss_pred             ceeecCCCccccccEEEEeeeccCC-----------CCeEEEeecccccc---cccccccccCCCccEEeeCCeEEEcCC
Q psy14896        198 DVVFDLSKRSILNDITLSCYAGGYP-----------NPSYEWFKEDYVQD---RLVANLIDPLSDKRFTLSGGNLIINDP  263 (813)
Q Consensus       198 ~~~v~~g~~~~g~~v~l~C~~~g~P-----------~p~v~W~k~g~~l~---~~~~~~~~~~~~~~~~~~~~~l~i~~~  263 (813)
                      ...+.+|     ++|.|.|.+.+.|           .+.|.|+|++...-   ....+.+.+....++...+++|.|.+.
T Consensus        31 ~~~v~eG-----e~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v  105 (227)
T PHA02826         31 PVYAKFG-----DPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNV  105 (227)
T ss_pred             eEEecCC-----CCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCC
Confidence            3455555     7799999997654           34899999985310   000000011111222233678999886


Q ss_pred             ccccCCeeEEEEeecCceeeEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCC----CCcceEEEeeccccccc
Q psy14896        264 RQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTN----YPGVNYYWARDYFPNFV  339 (813)
Q Consensus       264 ~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~----~p~~~v~W~k~~~~~~~  339 (813)
                       +.+|+|.|+|+|+|..+.. ...+.|.|...      ..+..+.+|+.+.|.|.+..+    .|.|+++|+|||+++. 
T Consensus       106 -~~~DsG~Y~C~a~N~~~~~-~~~i~L~V~~~------~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~-  176 (227)
T PHA02826        106 -INIDEGIYICTISSGNICE-ESTIRLTFDSG------TINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVL-  176 (227)
T ss_pred             -ChHHCEEEEEEEEECCcce-EEEEEEEEecC------CccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECC-
Confidence             8999999999999988765 55666776321      134456789999999987543    4679999999999853 


Q ss_pred             cCCccEEEccC-ccEEEeeeeecCCeeeEEEEeeec
Q psy14896        340 EEDKRVFVSYD-GALYFSALEQIDAGNYSCNVQSKV  374 (813)
Q Consensus       340 ~~~~~~~~~~~-~~L~i~~v~~~D~G~Y~C~a~n~~  374 (813)
                       ...++.+..+ ++|.|.+++.+|+|.|+|+|....
T Consensus       177 -~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~  211 (227)
T PHA02826        177 -YTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRFNK  211 (227)
T ss_pred             -CCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence             4446665544 489999999999999999999864

>PHA02867 C-type lectin protein; Provisional

Probab=99.81  E-value=1.1e-19  Score=159.53  Aligned_cols=114  Identities=18%  Similarity=0.320  Sum_probs=91.1

Q ss_pred             ccccCCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCC
Q psy14896         23 DELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNL  102 (813)
Q Consensus        23 ~~~~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~  102 (813)
                      ...+..||.||..|+++||+|+.+. ++|.+|+..|..+||+||+|++++|++||.++.     ...+||||++...   
T Consensus        43 ~~~~~~CP~gWi~~~~~CY~fs~~~-~tW~~A~~~C~~~ga~La~I~s~eE~~Fl~~~~-----~~~~WIGLs~~~~---  113 (167)
T PHA02867         43 PYFSKVCPDEWIGYNSKCYYFTINE-TNWNDSKKLCDVMDSSLIRFDNIETLNFVSRYG-----KGSYWIDINQNRK---  113 (167)
T ss_pred             CCcCCCCCCCCEEECCEEEEEeccc-cCHHHHHHHHhhCCCEECCcCCHHHHHHHHHcC-----CCCEEEEEEeCCC---
Confidence            3456789999999999999999995 999999999999999999999999999998763     3479999998753   


Q ss_pred             eEEcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeecc
Q psy14896        103 WVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEASI  161 (813)
Q Consensus       103 ~~W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~~  161 (813)
                      +.|.+++.+      + .   ..+.+.|+.+...      .+.+..|.....|+|++..
T Consensus       114 ~~~~~~s~~------~-~---~~~~~~Ca~i~~~------~i~s~~C~~~~~wIC~K~~  156 (167)
T PHA02867        114 IPGINFSLY------Y-E---QGVNDICLLFDTS------NIIEMSCIFHERTICVKED  156 (167)
T ss_pred             CCCccCcee------e-e---cCCCCcEEEEeCC------eEEeecccCCcEEEEEccC
Confidence            455555433      1 1   1235788876443      3449999999999999964

>cd03591 CLECT_collectin_like C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)

Probab=99.81  E-value=1.1e-19  Score=156.12  Aligned_cols=112  Identities=19%  Similarity=0.140  Sum_probs=96.6

Q ss_pred             CeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcCCCCCCccccc
Q psy14896         38 DSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDGTNLNELDAA  117 (813)
Q Consensus        38 ~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~dgs~~~~~~~~  117 (813)
                      .+||+++.+. ++|.+|+.+|+.+||+||+|+|.+|++||.+++..  ....+||||++...++.|.|.||+++.| .+|
T Consensus         1 ~k~y~~~~~~-~~w~~A~~~C~~~g~~La~i~s~~e~~~l~~~~~~--~~~~~WiGl~~~~~~~~~~w~dg~~~~y-~~W   76 (114)
T cd03591           1 EKIFVTNGEE-KNFDDAQKLCSEAGGTLAMPRNAAENAAIASYVKK--GNTYAFIGITDLETEGQFVYLDGGPLTY-TNW   76 (114)
T ss_pred             CcEEEeCCce-eCHHHHHHHHhhcCCEEecCCCHHHHHHHHHHHhc--CCccEEEecccCCcCCcEEeCCCCCccc-CCc
Confidence            3799999995 99999999999999999999999999999999865  3457999999998999999999999987 677


Q ss_pred             cCCCCCCcc-cCCeEEEEeeccccccceeeccCCCceeeeee
Q psy14896        118 FLPEPADNV-QRDYLAYSFSQSLKRWGFERVTGMEPLLFICE  158 (813)
Q Consensus       118 ~~~~p~~~~-~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~  158 (813)
                      ..++|++.+ .++|+.|.. .    ..|.+..|.....|+|+
T Consensus        77 ~~~ep~~~~~~~~Cv~~~~-~----~~W~~~~C~~~~~fICe  113 (114)
T cd03591          77 KPGEPNNAGGGEDCVEMYT-S----GKWNDVACNLTRLFVCE  113 (114)
T ss_pred             CCCCCCCCCCCCCeEEECC-C----CcCcCccCCCCeeEEee
Confidence            777888754 578999862 2    23459999999999997

CLECT_collectin_like: C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. The CTLDs of these collectins bind carbohydrates on surfaces (e.g. pathogens, allergens, necrotic, or apoptotic cells) and mediate functions associated with killing and phagocytosis. MBPs recognize high mannose oligosaccharides in a calcium dependent manner, bind to a broad range of pathogens, and trigger cell killing by activating the complement pathway. MBP also acts directly as an opsonin. SP-A and SP-D in addition to functioning as host defense components, a

>cd03603 CLECT_VCBS A bacterial subgroup of the C-type lectin-like (CTLD) domain; a subgroup of bacterial protein domains homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins

Probab=99.81  E-value=1.7e-19  Score=155.37  Aligned_cols=114  Identities=19%  Similarity=0.293  Sum_probs=95.1

Q ss_pred             eEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcCCCCCCcccccc
Q psy14896         39 SCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDGTNLNELDAAF  118 (813)
Q Consensus        39 ~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~dgs~~~~~~~~~  118 (813)
                      |||+|+... ++|.+|+..|+.+||+||+|+|++|++||..++.   ....+||||.+...++.|.|.||+++.| .+|.
T Consensus         1 ~~Y~~~~~~-~sw~~A~~~C~~~g~~La~I~s~~E~~fv~~~~~---~~~~~WiG~~~~~~~~~w~W~dg~~~~~-~~W~   75 (118)
T cd03603           1 HFYKFVDGG-MTWEAAQTLAESLGGHLVTINSAEENDWLLSNFG---GYGASWIGASDAATEGTWKWSDGEESTY-TNWG   75 (118)
T ss_pred             CeEEEeCCC-cCHHHHHHHHHHcCCEEcccCCHHHHHHHHHHhc---cCCCEEEeeecCCCCCceEeCCCCcCCC-CCcC
Confidence            699999995 9999999999999999999999999999999985   2457899999988899999999999987 6777


Q ss_pred             CCCC-CCc-ccCCeEEEEeeccccccceeeccCC-Cceeeeee
Q psy14896        119 LPEP-ADN-VQRDYLAYSFSQSLKRWGFERVTGM-EPLLFICE  158 (813)
Q Consensus       119 ~~~p-~~~-~~~~c~~~~~~~~~~~l~i~~~~~~-d~~~y~C~  158 (813)
                      .++| ++. ..++|+.|....+. ...|.+..|. ....|+|+
T Consensus        76 ~~eP~~~~~~~~~Cv~~~~~~~~-~~~W~d~~C~~~~~~~iCe  117 (118)
T cd03603          76 SGEPHNNGGGNEDYAAINHFPGI-SGKWNDLANSYNTLGYVIE  117 (118)
T ss_pred             CCCCCCCCCCCcCeEEeecCCCC-CCcCccCCCCccccceEEe
Confidence            7788 553 35789988542101 2345599999 99999997

CLECT_VCBS: A bacterial subgroup of the C-type lectin-like (CTLD) domain; a subgroup of bacterial protein domains homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. Many CTLDs are calcium-dependent carbohydrate binding modules; other CTLDs bind protein ligands, lipids, and inorganic surfaces including CaCO3 and ice. Bacterial CTLDs within this group are functionally uncharacterized. Animal C-type lectins are involved in such functions as extracellular matrix organization, endocytosis, complement activation, pathogen recognition, and cell-cell interactions. CTLDs may bind a variety of carbohydrate ligands including mannose, N-acetylglucosamine, galactose, N-acetylgalactosamine, and fucose. CTLDs associate with each other through several different surface

>smart00034 CLECT C-type lectin (CTL) or carbohydrate-recognition domain (CRD)

Probab=99.80  E-value=2.7e-19  Score=158.66  Aligned_cols=124  Identities=27%  Similarity=0.455  Sum_probs=104.3

Q ss_pred             CchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhc-CCCCceEEEEeccCCCCCeEEcC
Q psy14896         29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQ-DPQRRKWYFGGTQQSPNLWVNED  107 (813)
Q Consensus        29 Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~-~~~~~~w~g~~~~~~~~~~~W~d  107 (813)
                      ||.||..|+++||+++... ++|.+|+.+|+.++|+||+|++++|++||.+++... .....+||||.+....+.|.|.|
T Consensus         1 Cp~~w~~~~~~Cy~~~~~~-~~~~~A~~~C~~~~~~La~i~~~~e~~~i~~~~~~~~~~~~~~WiG~~~~~~~~~~~W~d   79 (126)
T smart00034        1 CPSGWISYGGKCYKFSTEK-KTWADAQAFCQSLGAHLASIHSEAENDFVASLLKNSGSNSDYYWIGLSDPDSNGSWQWSD   79 (126)
T ss_pred             CCcchhhhCCEEEEEECCc-cCHHHHHHHHHhcCCEEcccCCHHHHHHHHHHHHhhcCCCCCEEEecCccCcCCCeEECC
Confidence            9999999999999999995 999999999999999999999999999999998543 13458999999877788999999


Q ss_pred             CCC-CCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeee
Q psy14896        108 GTN-LNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICE  158 (813)
Q Consensus       108 gs~-~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~  158 (813)
                      |++ ..+ .+|..+ ++......|+.|.....   ..|.+..|.....|+|+
T Consensus        80 g~~~~~~-~~w~~~-~~~~~~~~C~~~~~~~~---~~w~~~~C~~~~~~ICe  126 (126)
T smart00034       80 GSGPVNY-SNWAPG-EPNGGSGDCVVLSTSGG---GKWNDVSCTSKLPFVCE  126 (126)
T ss_pred             CCCCCCc-cccCCC-CCCCCCCCCEEEecCCC---CcccCCCCCCCcccccC
Confidence            999 555 565555 44455789999876543   34559999999999995

Many of these domains function as calcium-dependent carbohydrate binding modules.

>cd03592 CLECT_selectins_like C-type lectin-like domain (CTLD) of the type found in the type 1 transmembrane proteins: P(platlet)-, E(endothelial)-, and L(leukocyte)- selectins (sels)

Probab=99.78  E-value=6.7e-19  Score=151.85  Aligned_cols=113  Identities=19%  Similarity=0.268  Sum_probs=95.6

Q ss_pred             EEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcCCCCCCccccccCC
Q psy14896         41 YRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDGTNLNELDAAFLP  120 (813)
Q Consensus        41 y~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~dgs~~~~~~~~~~~  120 (813)
                      |+|+.+. ++|.+|+.+|+.+||+||+|+|++|++||..++... ....+||||++...++.|.|.||+++.| .+|..+
T Consensus         3 Y~~~~~~-~~w~~A~~~C~~~g~~La~i~s~~e~~~i~~~~~~~-~~~~~WiG~~~~~~~~~W~~~dg~~~~y-~~W~~g   79 (115)
T cd03592           3 YHYSTEK-MTFNEAVKYCKSRGTDLVAIQNAEENALLNGFALKY-NLGYYWIDGNDINNEGTWVDTDKKELEY-KNWAPG   79 (115)
T ss_pred             EEEcCCc-cCHHHHHHHHHHcCCeEeecCCHHHHHHHHHHHHhc-CCCCEEEeCccCCccCeEEeCCCCcccc-cccCCC
Confidence            8899985 999999999999999999999999999999987443 2347999999988889999999999887 677777


Q ss_pred             CCCCcccCCeEEEEeeccccccceeeccCCCceeeeeee
Q psy14896        121 EPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEA  159 (813)
Q Consensus       121 ~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~  159 (813)
                      +|++...++|+.|.....   ..|.+..|.....|+|++
T Consensus        80 eP~~~~~~~Cv~~~~~~~---g~W~d~~C~~~~~fICe~  115 (115)
T cd03592          80 EPNNGRNENCLEIYIKDN---GKWNDEPCSKKKSAICYT  115 (115)
T ss_pred             CCCCCCCCCceEEccCCC---CCCcCcCCCCCccceeCC
Confidence            998766789999875422   234599999999999974

CLECT_selectins_like: C-type lectin-like domain (CTLD) of the type found in the type 1 transmembrane proteins: P(platlet)-, E(endothelial)-, and L(leukocyte)- selectins (sels). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. P- E- and L-sels are cell adhesion receptors that mediate the initial attachment, tethering, and rolling of lymphocytes on inflamed vascular walls enabling subsequent lymphocyte adhesion and transmigration. L- sel is expressed constitutively on most leukocytes. P-sel is stored in the Weibel-Palade bodies of endothelial cells and in the alpha granules of platlets. E- sels are present on endothelial cells. Following platelet and/or endothelial cell activation P- sel is rapidly translocated to the cell surface and E-sel exp

>cd03601 CLECT_TC14_like C-type lectin-like domain (CTLD) of the type found in lectins TC14, TC14-2, TC14-3, and TC14-4 from the budding tunicate Polyandrocarpa misakiensis and PfG6 from the Acorn worm

Probab=99.78  E-value=1.3e-18  Score=150.32  Aligned_cols=111  Identities=14%  Similarity=0.070  Sum_probs=87.3

Q ss_pred             EEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhc--CCCCceEEEEecc-CCCCCeEEcCCCCC--Cccc
Q psy14896         41 YRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQ--DPQRRKWYFGGTQ-QSPNLWVNEDGTNL--NELD  115 (813)
Q Consensus        41 y~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~--~~~~~~w~g~~~~-~~~~~~~W~dgs~~--~~~~  115 (813)
                      |+|+.+ .++|.+|+.+|+.+||+||+|+|++|  ++.+.+...  .....+||||++. ..++.|.|+||+++  .| .
T Consensus         3 ~~~~~~-~~~w~~A~~~C~~~G~~La~i~s~~e--~~~~~i~~~~~~~~~~~WIGl~d~~~~~g~~~W~dG~~~~~~y-~   78 (119)
T cd03601           3 ILCSDE-TMNYAKAGAFCRSRGMRLASLAMRDS--EMRDAILAFTLVKGHGYWVGADNLQDGEYDFLWNDGVSLPTDS-D   78 (119)
T ss_pred             EEEcCC-cCCHHHHHHHHHhcCCEEeeecCHHH--HHHHHHHhccccCCccEEEEeccCCCCCCCeEeCCCCCcCCCC-C
Confidence            788888 49999999999999999999999988  222333221  1234699999998 88999999999998  45 5


Q ss_pred             cccCCCCCCcc-cCCeEEEEeeccccccceeeccCCCceeeeeee
Q psy14896        116 AAFLPEPADNV-QRDYLAYSFSQSLKRWGFERVTGMEPLLFICEA  159 (813)
Q Consensus       116 ~~~~~~p~~~~-~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~  159 (813)
                      +|..++|++.. .++|+.|....    ..|.+..|.....|+|++
T Consensus        79 ~W~~geP~~~~~~e~Cv~~~~~~----~~W~d~~C~~~~~fICek  119 (119)
T cd03601          79 LWAPNEPSNPQSRQLCVQLWSKY----NLLDDEYCGRAKRVICEK  119 (119)
T ss_pred             ccCCCcCcCcCCCcCCeEEeCCC----CCEeCccCCCCceeeecC
Confidence            77777998754 57899986542    245599999999999974

CLECT_TC14_like: C-type lectin-like domain (CTLD) of the type found in lectins TC14, TC14-2, TC14-3, and TC14-4 from the budding tunicate Polyandrocarpa misakiensis and PfG6 from the Acorn worm. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. TC14 is homodimeric. The CTLD of TC14 binds D-galactose and D-fucose. TC14 is expressed constitutively by multipotent epithelial and mesenchymal cells and plays in role during budding, in inducing the aggregation of undifferentiated mesenchymal cells to give rise to epithelial forming tissue. TC14-2 and TC14-3 shows calcium-dependent galactose binding activity. TC14-3 is a cytostatic factor which blocks cell growth and dedifferentiation of the atrial epithelium during asexual reproducti

>cd03595 CLECT_chondrolectin_like C-type lectin-like domain (CTLD) of the type found in the human type-1A transmembrane proteins chondrolectin (CHODL) and layilin

Probab=99.76  E-value=3.3e-18  Score=153.88  Aligned_cols=120  Identities=14%  Similarity=0.184  Sum_probs=95.7

Q ss_pred             cCCeEEEEe-----cCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhc-CCCCceEEEEeccCCC--------C
Q psy14896         36 YRDSCYRFV-----KSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQ-DPQRRKWYFGGTQQSP--------N  101 (813)
Q Consensus        36 ~~~~Cy~~~-----~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~-~~~~~~w~g~~~~~~~--------~  101 (813)
                      |+++||+++     .. +++|.+|+..|+.+||+||+|+|++|++||..+++.. .....+||||.+...+        +
T Consensus         8 ~~~~Cy~~~~~~~~~~-~~tw~~A~~~C~~~g~~LasI~s~~E~~~i~~~i~~~~~~~~~~WIGl~~~~~~~~~~~~~~~   86 (149)
T cd03595           8 TEKPCYKIAYFQDSRR-RLNFEEARQACREDGGELLSIESENEQKLIERFIQTLRASDGDFWIGLRRSSQYNVTSSACSS   86 (149)
T ss_pred             CCCccEEEEEEecccc-ccCHHHHHHHHHHcCCEECccCCHHHHHHHHHHHHhhcCCCCcEEEEeECCCCccccccccCC
Confidence            558999964     55 5999999999999999999999999999999888543 2234799999987643        4


Q ss_pred             CeEEcCCCCCCccccccCCCCCCcccCCeEEEEeecc-------ccccceeeccCCCceeeeee
Q psy14896        102 LWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQS-------LKRWGFERVTGMEPLLFICE  158 (813)
Q Consensus       102 ~~~W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~-------~~~l~i~~~~~~d~~~y~C~  158 (813)
                      .|.|.||+++.| .+|..++|++ +.++|+.|.....       .....|.+..|.....|+|+
T Consensus        87 ~~~W~dG~~~~y-~~W~~~eP~~-~~~~Cv~l~~~~~~~~~~~~~~~~~W~d~~C~~~~~fICe  148 (149)
T cd03595          87 LYYWLDGSISTF-RNWYVDEPSC-GSEVCVVMYHQPSAPAGQGGPYLFQWNDDNCNMKNNFICK  148 (149)
T ss_pred             ccEEcCCCccCc-cCCCCCCCCC-cccCCEEEEecCCCCcCcCcccCCCccCCCCCCCcccccC
Confidence            699999999998 6777778875 5679999965321       11235669999999999997

CLECT_chondrolectin_like: C-type lectin-like domain (CTLD) of the type found in the human type-1A transmembrane proteins chondrolectin (CHODL) and layilin. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. CHODL is predominantly expressed in muscle cells and is associated with T-cell maturation. Various alternatively spliced isoforms have been of CHODL have been identified. The transmembrane form of CHODL is localized in the ER-Golgi apparatus. Layilin is widely expressed in different cell types. The extracellular CTLD of layilin binds hyaluronan (HA), a major constituent of the extracellular matrix (ECM). The cytoplasmic tail of layilin binds various members of the band 4.1/ERM superfamily (talin, radixin, and merlin). The ERM proteins are cytoskeleton-membrane l

>cd03600 CLECT_thrombomodulin_like C-type lectin-like domain (CTLD) of the type found in human thrombomodulin(TM), Endosialin, C14orf27, and C1qR

Probab=99.75  E-value=1.4e-17  Score=149.01  Aligned_cols=122  Identities=18%  Similarity=0.197  Sum_probs=95.1

Q ss_pred             cCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcC-----CCCceEEEEeccC--------CCCC
Q psy14896         36 YRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQD-----PQRRKWYFGGTQQ--------SPNL  102 (813)
Q Consensus        36 ~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~-----~~~~~w~g~~~~~--------~~~~  102 (813)
                      .+++||+++... ++|.+|+.+|+.+||+||+|+|.+|++||..++....     ....+||||.+..        .++.
T Consensus         2 ~~~~Cy~~~~~~-~sw~~A~~~C~~~gg~La~i~s~~E~~~v~~~l~~~~~~~~~~~~~~WIGl~~~~~~~~~~~~~~~~   80 (141)
T cd03600           2 VSDACYTLHPQK-LTFLEAQRSCIELGGNLATVRSGEEADVVSLLLAAGPGRHGRGSLRLWIGLQREPRQCSDPSLPLRG   80 (141)
T ss_pred             CCCceEEEeCCc-cCHHHHHHHHHhhCCEeeecCCHHHHHHHHHHHhhccccccCCCccEEEeEecCcccCccccccCCc
Confidence            368999999994 9999999999999999999999999999999885532     2457999999843        2467


Q ss_pred             eEEcCCCC-CCccccccCCCCCCc-ccCCeEEEEeecc-ccccceeeccCCCce-eeeeeec
Q psy14896        103 WVNEDGTN-LNELDAAFLPEPADN-VQRDYLAYSFSQS-LKRWGFERVTGMEPL-LFICEAS  160 (813)
Q Consensus       103 ~~W~dgs~-~~~~~~~~~~~p~~~-~~~~c~~~~~~~~-~~~l~i~~~~~~d~~-~y~C~~~  160 (813)
                      |.|.||+. .+| .+|..+ |++. ..++|+.|....+ ...+.|.+..|.... .|+|+..
T Consensus        81 f~W~d~~~~~~y-~~W~~~-p~n~~~~~~Cv~l~~~~~~~~~~~W~d~~C~~~~~~fIC~~~  140 (141)
T cd03600          81 FSWVTGDQDTDF-SNWLQE-PAGTCTSPRCVALSAAGSTPDNLKWKDGPCSARADGYLCKFS  140 (141)
T ss_pred             cEECCCCCCCCc-cccccC-CCCCCCCCccEEEEccCCCCCCCccccCCcCCCCCCeEEeee
Confidence            99999865 455 566555 6654 4689999977542 113556699999874 7999973

CLECT_thrombomodulin_like: C-type lectin-like domain (CTLD) of the type found in human thrombomodulin(TM), Endosialin, C14orf27, and C1qR. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. In these thrombomodulin-like proteins the residues involved in coordinating Ca2+ in the classical MBP-A CTLD are not conserved. TM exerts anti-fibrinolytic and anti-inflammatory activity. TM also regulates blood coagulation in the anticoagulant protein C pathway. In this pathway, the procoagulant properties of thrombin (T) are lost when it binds TM. TM also plays a key role in tumor biology. It is expressed on endothelial cells and on several type of tumor cell including squamous cell carcinoma. Loss of TM expression correlates with advanced stage and poor prognosis. Loss of function of TM func

>cd03602 CLECT_1 C-type lectin (CTL)/C-type lectin-like (CTLD) domain subgroup 1; a subgroup of protein domains homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins

Probab=99.74  E-value=6.6e-18  Score=143.77  Aligned_cols=108  Identities=20%  Similarity=0.253  Sum_probs=90.3

Q ss_pred             eEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcCCCCCCcccccc
Q psy14896         39 SCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDGTNLNELDAAF  118 (813)
Q Consensus        39 ~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~dgs~~~~~~~~~  118 (813)
                      .||+|+... ++|.+|+.+|+.+||+||+|+|++|++||..++.  .....+||||.+.  ++.|.|+||+++.| .+|.
T Consensus         1 ~~y~~~~~~-~~w~~A~~~C~~~g~~La~i~s~~e~~~l~~~~~--~~~~~~WiGl~~~--~~~~~W~dg~~~~~-~~w~   74 (108)
T cd03602           1 RTFYLVNES-KTWSEAQQYCRENYTDLATVQNQEDNALLSNLSR--VSNSAAWIGLYRD--VDSWRWSDGSESSF-RNWN   74 (108)
T ss_pred             CceEEeccc-cCHHHHHHHHHHHCCccCeecCHHHHHHHHHHHh--ccCCcEEEEEECC--CCceEEcCCCCCcc-CccC
Confidence            379999995 9999999999999999999999999999999885  2345799999987  77899999999887 5665


Q ss_pred             CCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeee
Q psy14896        119 LPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEA  159 (813)
Q Consensus       119 ~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~  159 (813)
                      .++|.+  .++|+.|... +  .|.  +..|.....|+|+.
T Consensus        75 ~~~~~~--~~~C~~~~~~-~--~w~--~~~C~~~~~fIC~~  108 (108)
T cd03602          75 TFQPFG--QGDCATMYSS-G--RWY--AALCSALKPFICYD  108 (108)
T ss_pred             CCCCCC--CCCeeEECcC-C--eEC--cccCCCCcCEeccC
Confidence            557543  5899988653 2  455  99999999999973

CLECT_1: C-type lectin (CTL)/C-type lectin-like (CTLD) domain subgroup 1; a subgroup of protein domains homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. Many CTLDs are calcium-dependent carbohydrate binding modules; other CTLDs bind protein ligands, lipids, and inorganic surfaces including CaCO3 and ice. Animal C-type lectins are involved in such functions as extracellular matrix organization, endocytosis, complement activation, pathogen recognition, and cell-cell interactions. CTLDs may bind a variety of carbohydrate ligands including mannose, N-acetylglucosamine, galactose, N-acetylgalactosamine, and fucose. CTLDs associate with each other through several different surfaces to form dimers, trimers, or tetramers from which ligand-binding sites project in differe

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.73  E-value=1.8e-17  Score=136.69  Aligned_cols=86  Identities=19%  Similarity=0.273  Sum_probs=76.2

Q ss_pred             CCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceee----ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEE
Q psy14896        680 FPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----NFNRILTIPNVKVEDQGEYICRASNDRSALESSVT  755 (813)
Q Consensus       680 ~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~  755 (813)
                      ....+..|+.+.|.|.+.|.|+|.++|+|||.+|..+.++.    ...+.|+|.++..+|+|.|+|.|.|.+|.+++++.
T Consensus         8 ~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~   87 (98)
T cd05762           8 EDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVN   87 (98)
T ss_pred             cCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEE
Confidence            34678999999999999999999999999999997665442    23578999999999999999999999999999999


Q ss_pred             EEEEcCCccc
Q psy14896        756 ISIQAEPNFT  765 (813)
Q Consensus       756 l~V~~~P~~~  765 (813)
                      |.|.++|..+
T Consensus        88 l~V~~~P~pP   97 (98)
T cd05762          88 LTVVDKPDPP   97 (98)
T ss_pred             EEEecCCCCC
Confidence            9999988643

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.70  E-value=7.5e-17  Score=130.40  Aligned_cols=79  Identities=32%  Similarity=0.561  Sum_probs=71.8

Q ss_pred             CcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896        681 PEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ  759 (813)
Q Consensus       681 ~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  759 (813)
                      +..+.+|+.+.|.|.+.|.|.|.|+|+|++.++....++...+..|.|.+++.+|+|.|+|.|.|.+|..+..+.|.|+
T Consensus        10 ~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~   88 (88)
T cd05851          10 DTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGKDKHQARVYVQ   88 (88)
T ss_pred             cEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCCCceEEEEEEEEC
Confidence            4667899999999999999999999999999987766665556789999999999999999999999999999999884

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.67  E-value=5e-16  Score=127.38  Aligned_cols=93  Identities=34%  Similarity=0.673  Sum_probs=78.6

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccC
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED  268 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d  268 (813)
                      +|.|..+|.++.+.+|.  +|++++|.|.+.|+|.|.|+|+|||..+.        ...+.++.+.+++|+|.+.+..+|
T Consensus         1 ~P~f~~~P~~~~~~~~~--~g~~v~l~C~a~g~P~p~i~W~~~g~~l~--------~~~~~~~~~~~g~L~I~~~~~~~D   70 (94)
T cd05850           1 GPVFEEQPSSLLFPEGS--PEEKVTLGCRARASPPATYRWKMNGTEIK--------FAPESRYTLVAGNLVINNPQKARD   70 (94)
T ss_pred             CCeeEECCCCEEecCCC--CCCeEEEEeEceeCCCCEEEEEECCEECc--------cCCCceEEEECCeEEEccCCccCc
Confidence            37899999999998874  47889999999999999999999998662        233456777789999988655799


Q ss_pred             CeeEEEEeecCceeeEeeeeEEe
Q psy14896        269 RGSYHCKASNKFGSIISESVQLA  291 (813)
Q Consensus       269 ~G~Y~C~a~n~~g~~~s~~~~l~  291 (813)
                      +|.|+|.|+|..|...|..+.|+
T Consensus        71 ~G~Y~C~A~N~~G~~~s~~a~l~   93 (94)
T cd05850          71 AGSYQCLAINRCGTVVSREANLR   93 (94)
T ss_pred             CEEEEEEEEcCcCcEEEEEEEEe
Confidence            99999999999999988877775

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.66  E-value=7.6e-16  Score=126.20  Aligned_cols=93  Identities=41%  Similarity=0.797  Sum_probs=75.7

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccC
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED  268 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d  268 (813)
                      .|.|+.+|.++.+..+  .+|++++|.|.+.|.|.|+|+|+|||..|.        ...+.++...+++|+|.+....+|
T Consensus         1 ~P~f~~~p~~~~~~~~--~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~--------~~~~~~~~~~~g~L~i~~~~~~~D   70 (94)
T cd05848           1 GPVFVQEPDDAIFPTD--SDEKKVILNCEARGNPVPTYRWLRNGTEID--------TESDYRYSLIDGNLIISNPSEVKD   70 (94)
T ss_pred             CCeeEECCCcEEccCC--CCCCEEEEEEEeeecCCCEEEEEECCeECc--------cCCCceEEeeCCeEEEccCCccCc
Confidence            3789999999877655  356889999999999999999999998663        123345666788999988544799


Q ss_pred             CeeEEEEeecCceeeEeeeeEEe
Q psy14896        269 RGSYHCKASNKFGSIISESVQLA  291 (813)
Q Consensus       269 ~G~Y~C~a~n~~g~~~s~~~~l~  291 (813)
                      +|.|+|.|+|..|.+.|..+.|.
T Consensus        71 ~G~Y~C~A~N~~G~~~S~~~~l~   93 (94)
T cd05848          71 SGRYQCLATNSIGSILSREALLQ   93 (94)
T ss_pred             CEEEEEEEEcCCCeEEeccEEEe
Confidence            99999999999999988777664

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.66  E-value=4.3e-16  Score=120.34  Aligned_cols=72  Identities=29%  Similarity=0.523  Sum_probs=65.2

Q ss_pred             CCeEEEEEEecCCCCCeEEEEeCCcccCCCceeee-cceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896        687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFEN-FNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI  758 (813)
Q Consensus       687 G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  758 (813)
                      |+++.|.|.+.|.|.|.|+|+|++..+..+.++.. .+++|.|.+++.+|+|.|+|.|.|.+|+++.++.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            78999999999999999999999998877666543 4578999999999999999999999999999999875

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.66  E-value=9.3e-16  Score=124.96  Aligned_cols=92  Identities=35%  Similarity=0.739  Sum_probs=75.8

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccC
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED  268 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d  268 (813)
                      +|.|+.+|.+..+.++.  .|..+.|.|.+.|+|.|+|+|||++..+.         ....++.+.++.|.|.+....+|
T Consensus         1 ~P~f~~~P~~~~~~~~~--~~~~v~l~C~a~G~P~P~i~W~k~~~~i~---------~~~~~~~~~~g~L~I~~~~~~~D   69 (93)
T cd05849           1 GPVFEEQPIDTIYPEES--TEGKVSVNCRARANPFPIYKWRKNNLDID---------LTNDRYSMVGGNLVINNPDKYKD   69 (93)
T ss_pred             CCEEEECCCCEEecCCc--cCCeEEEeCcCccCCCCEEEEEECCEEcc---------CCCCeEEEECCEEEECcCCcCCC
Confidence            48899999998887763  24679999999999999999999997652         22346677789999987634699


Q ss_pred             CeeEEEEeecCceeeEeeeeEEe
Q psy14896        269 RGSYHCKASNKFGSIISESVQLA  291 (813)
Q Consensus       269 ~G~Y~C~a~n~~g~~~s~~~~l~  291 (813)
                      +|.|+|.|+|..|.+.+..+.|.
T Consensus        70 ~G~Y~C~A~N~~G~~~s~~a~l~   92 (93)
T cd05849          70 AGRYVCIVSNIYGKVRSREATLS   92 (93)
T ss_pred             CEEEEEEEEeCcceEEEccEEEe
Confidence            99999999999999988777765

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.64  E-value=6.3e-16  Score=120.86  Aligned_cols=73  Identities=32%  Similarity=0.555  Sum_probs=65.1

Q ss_pred             CCCeEEEEEEecCCCCCeEEEEeCCcccCCCcee-eecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896        686 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI  758 (813)
Q Consensus       686 ~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  758 (813)
                      +|+++.|.|.+.|.|.|.|+|+|+|.++..+.++ ....++|+|.+++.+|+|.|+|.|.|.+|..+.++.|.|
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   74 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV   74 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence            5899999999999999999999999988765433 234568999999999999999999999999999999876

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.64  E-value=1.8e-15  Score=122.28  Aligned_cols=78  Identities=21%  Similarity=0.334  Sum_probs=67.7

Q ss_pred             CCeEEEEEEecCCCCCeEEEEeCCcccCCCc-eeee--------cceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEE
Q psy14896        687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-YFEN--------FNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS  757 (813)
Q Consensus       687 G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~-~~~~--------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~  757 (813)
                      |+.++|.|.+.|.|+|.++|+|++..+..+. ++..        ..++|.|.++..+|+|.|+|.|.|.+|..+..+.|.
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~   80 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT   80 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence            7899999999999999999999998885432 3311        126799999999999999999999999999999999


Q ss_pred             EEcCCcc
Q psy14896        758 IQAEPNF  764 (813)
Q Consensus       758 V~~~P~~  764 (813)
                      |..+|..
T Consensus        81 V~~~P~~   87 (88)
T cd05735          81 VQEPPDP   87 (88)
T ss_pred             EeCCCCC
Confidence            9998863

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.64  E-value=1e-15  Score=123.19  Aligned_cols=79  Identities=29%  Similarity=0.562  Sum_probs=72.3

Q ss_pred             CCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896        680 FPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI  758 (813)
Q Consensus       680 ~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  758 (813)
                      .+..+..|++++|.|.+.|.|.|.++|+|+|.++....++...++.|.|.++..+|+|.|+|.|.|.+|...+++.|.|
T Consensus         7 ~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   85 (85)
T cd05728           7 SDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTIYASAELAV   85 (85)
T ss_pred             CccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEEEEC
Confidence            3467889999999999999999999999999999877767666789999999999999999999999999999999876

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.63  E-value=2e-15  Score=122.13  Aligned_cols=87  Identities=26%  Similarity=0.353  Sum_probs=72.2

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccC
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED  268 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d  268 (813)
                      ||.|+..|.+..+.+|     +.++|.|.+.|+|.|.|+|+|++..+.          ...++...++.|.|.+. +.+|
T Consensus         1 ~p~i~~~~~~~~~~~G-----~~v~l~C~~~G~P~P~v~W~k~~~~~~----------~~~~~~~~~~~L~I~~v-~~~D   64 (88)
T cd05851           1 PADINVKFKDTYALKG-----QNVTLECFALGNPVPVIRWRKILEPMP----------ATAEISMSGAVLKIFNI-QPED   64 (88)
T ss_pred             CCceEEccccEEEeCC-----CcEEEEEEecccCCCEEEEEECCcCCC----------CCCEEecCCCEEEECcC-Chhh
Confidence            5889999999998887     669999999999999999999997652          22345555678888885 8999


Q ss_pred             CeeEEEEeecCceeeEeeeeEEee
Q psy14896        269 RGSYHCKASNKFGSIISESVQLAF  292 (813)
Q Consensus       269 ~G~Y~C~a~n~~g~~~s~~~~l~v  292 (813)
                      +|.|+|.|.|..|.. +..+.|.|
T Consensus        65 ~G~Y~C~A~N~~G~~-~~~~~l~V   87 (88)
T cd05851          65 EGTYECEAENIKGKD-KHQARVYV   87 (88)
T ss_pred             CEEEEEEEEcCCCce-EEEEEEEE
Confidence            999999999999987 56666665

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.63  E-value=9.3e-16  Score=126.37  Aligned_cols=78  Identities=19%  Similarity=0.275  Sum_probs=68.6

Q ss_pred             cCCCCCCeEEEEEEecC-CCCCeEEEEeCCcccCCCcee--ee-------cceEEEECCCCCCCCEEEEEEEEcCCCceE
Q psy14896        682 EAPKAGDKVRLECVAFG-YPVPSYNWTRRGSPLPRNAYF--EN-------FNRILTIPNVKVEDQGEYICRASNDRSALE  751 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g-~P~p~i~W~k~g~~l~~~~~~--~~-------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~  751 (813)
                      +.+.+|++++|.|.+.| .|+|.++|+|||.+|......  ..       ..+.|.|.++..+|+|.|+|.|+|..|.++
T Consensus        13 ~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~   92 (101)
T cd04975          13 IFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASKS   92 (101)
T ss_pred             EEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccEE
Confidence            56789999999999999 899999999999999754332  11       247899999999999999999999999999


Q ss_pred             EEEEEEEE
Q psy14896        752 SSVTISIQ  759 (813)
Q Consensus       752 ~~~~l~V~  759 (813)
                      .++.|.|+
T Consensus        93 ~t~~L~V~  100 (101)
T cd04975          93 LTFELYVN  100 (101)
T ss_pred             EEEEEEEE
Confidence            99999986

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.63  E-value=1e-15  Score=114.82  Aligned_cols=66  Identities=23%  Similarity=0.465  Sum_probs=58.2

Q ss_pred             EEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896        690 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ  759 (813)
Q Consensus       690 v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  759 (813)
                      ++|.|.+.|.|+|.++|||||++|...    ...+.|.|.++..+|+|.|+|+|+|..|..++++.|.|.
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~----~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~   66 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGK----HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI   66 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECccc----CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence            479999999999999999999999632    235689999999999999999999999988888877764

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.63  E-value=1.2e-15  Score=118.13  Aligned_cols=69  Identities=26%  Similarity=0.395  Sum_probs=59.4

Q ss_pred             EEEEEEecCCCCCeEEEEeCCcccCCC-ceeee---c--ceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896        690 VRLECVAFGYPVPSYNWTRRGSPLPRN-AYFEN---F--NRILTIPNVKVEDQGEYICRASNDRSALESSVTISI  758 (813)
Q Consensus       690 v~l~C~~~g~P~p~i~W~k~g~~l~~~-~~~~~---~--~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  758 (813)
                      |.|.|.+.|.|.|.|+|+|+|..|..+ .++..   .  ..+|.|.++..+|+|.|+|.|.|.+|++++++.|.|
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            579999999999999999999998743 34321   1  237999999999999999999999999999999976

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.63  E-value=2.3e-15  Score=118.37  Aligned_cols=72  Identities=25%  Similarity=0.543  Sum_probs=64.4

Q ss_pred             CCeEEEEEEecCCCCCeEEEEeCCcccCCCc---eeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896        687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA---YFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI  758 (813)
Q Consensus       687 G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~---~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  758 (813)
                      |++++|.|.+.|.|.|.|+|+|+|.++....   ++....+.|.|.+++.+|+|.|+|.|.|..|...+++.|.|
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence            7899999999999999999999999886532   44445678999999999999999999999999999999987

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.62  E-value=2.3e-15  Score=120.81  Aligned_cols=77  Identities=22%  Similarity=0.365  Sum_probs=67.2

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCC-ceee----ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRN-AYFE----NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI  756 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~-~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l  756 (813)
                      +.+.+|+.+.|.|.+.|.|+|.++|+|++.++... .++.    ...+.|.|.++..+|+|.|+|.|.|..|+++.++.|
T Consensus         5 ~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l   84 (86)
T cd05894           5 IVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFV   84 (86)
T ss_pred             EEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEE
Confidence            45788999999999999999999999999999754 2332    234689999999999999999999999999999998


Q ss_pred             EE
Q psy14896        757 SI  758 (813)
Q Consensus       757 ~V  758 (813)
                      .|
T Consensus        85 ~V   86 (86)
T cd05894          85 KV   86 (86)
T ss_pred             EC
Confidence            76

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.61  E-value=4.3e-15  Score=118.98  Aligned_cols=75  Identities=23%  Similarity=0.458  Sum_probs=64.6

Q ss_pred             CeEEEEEEecCCCCC--eEEEEeCCcccCCCc---ee---e--ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEE
Q psy14896        688 DKVRLECVAFGYPVP--SYNWTRRGSPLPRNA---YF---E--NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS  757 (813)
Q Consensus       688 ~~v~l~C~~~g~P~p--~i~W~k~g~~l~~~~---~~---~--~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~  757 (813)
                      ++++|.|.+.|+|.|  .|+|+|||.+|....   ++   .  ...+.|+|.+++.+|+|.|+|.|.|.+|+.++++.|.
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~   80 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence            478999999999987  689999999885432   22   1  1346899999999999999999999999999999999


Q ss_pred             EEcCC
Q psy14896        758 IQAEP  762 (813)
Q Consensus       758 V~~~P  762 (813)
                      |.+||
T Consensus        81 V~~~P   85 (85)
T cd05854          81 VRGPP   85 (85)
T ss_pred             EECCC
Confidence            99987

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.61  E-value=3.5e-15  Score=116.92  Aligned_cols=73  Identities=25%  Similarity=0.418  Sum_probs=63.6

Q ss_pred             CCeEEEEEEecCCCCCeEEEEeCCcccCCCc---eeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896        687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA---YFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ  759 (813)
Q Consensus       687 G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~---~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  759 (813)
                      |++++|.|.+.|+|.|.|+|+|+|+++....   ......+.|.|.+++.+|+|.|+|.|.|.+|...+++.|.|.
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~   76 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL   76 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence            7899999999999999999999999986331   223345689999999999999999999999999999999883

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.61  E-value=5.7e-15  Score=121.83  Aligned_cols=91  Identities=23%  Similarity=0.351  Sum_probs=74.3

Q ss_pred             CceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEee----CCeEEEcCCcc
Q psy14896        190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS----GGNLIINDPRQ  265 (813)
Q Consensus       190 P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~  265 (813)
                      |.|+..|.+..+..|     +.+.|.|.+.|.|.|.+.|+|||.+|..          +.++...    ...|+|.+. .
T Consensus         1 p~~~~~p~~~~v~~G-----~~v~l~C~~~G~p~p~v~W~kdg~~l~~----------~~~~~~~~~~~~s~L~I~~~-~   64 (98)
T cd05762           1 PQIIQFPEDMKVRAG-----ESVELFCKVTGTQPITCTWMKFRKQIQE----------GEGIKIENTENSSKLTITEG-Q   64 (98)
T ss_pred             CceEECCcCEEEECC-----CEEEEEEEEcccCCCceEEEECCEEecC----------CCcEEEEecCCeeEEEECCC-C
Confidence            678899999999887     6699999999999999999999987632          2233322    456788775 8


Q ss_pred             ccCCeeEEEEeecCceeeEeeeeEEeeeeecc
Q psy14896        266 VEDRGSYHCKASNKFGSIISESVQLAFGFIGE  297 (813)
Q Consensus       266 ~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~  297 (813)
                      .+|+|.|+|.|.|..|.. ..++.|.|...|.
T Consensus        65 ~~D~G~Ytc~a~N~~G~~-~~~~~l~V~~~P~   95 (98)
T cd05762          65 QEHCGCYTLEVENKLGSR-QAQVNLTVVDKPD   95 (98)
T ss_pred             hhhCEEEEEEEEcCCCce-eEEEEEEEecCCC
Confidence            999999999999999998 6678888876654

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.61  E-value=3e-15  Score=115.40  Aligned_cols=70  Identities=29%  Similarity=0.495  Sum_probs=63.4

Q ss_pred             EEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896        690 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ  759 (813)
Q Consensus       690 v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  759 (813)
                      +.|.|.+.|.|+|.++|+|||.+|..+.++....++|.|.+++.+|+|.|+|.|.|..|..+.++.+.|.
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~   70 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV   70 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence            4799999999999999999999998877776667899999999999999999999999998888877764

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.60  E-value=2.4e-15  Score=116.68  Aligned_cols=69  Identities=28%  Similarity=0.466  Sum_probs=59.1

Q ss_pred             EEEEEEecCCCCCeEEEEeCCcccCCC-ceeeec-----ceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896        690 VRLECVAFGYPVPSYNWTRRGSPLPRN-AYFENF-----NRILTIPNVKVEDQGEYICRASNDRSALESSVTISI  758 (813)
Q Consensus       690 v~l~C~~~g~P~p~i~W~k~g~~l~~~-~~~~~~-----~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  758 (813)
                      |+|.|.+.|.|.|.|+|+|++.++..+ .++...     ..+|.|.++..+|+|.|+|.|.|.+|+.++++.|.|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            579999999999999999999998753 333221     126999999999999999999999999999999876

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.60  E-value=3.8e-15  Score=117.25  Aligned_cols=75  Identities=17%  Similarity=0.392  Sum_probs=64.5

Q ss_pred             CeEEEEEEecCCC--CCeEEEEeCCcccCC---Cceeee-----cceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEE
Q psy14896        688 DKVRLECVAFGYP--VPSYNWTRRGSPLPR---NAYFEN-----FNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS  757 (813)
Q Consensus       688 ~~v~l~C~~~g~P--~p~i~W~k~g~~l~~---~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~  757 (813)
                      +++.|.|.+.++|  ++.|+|+|||++|..   +.++..     ..+.|.|.+++.+|+|.|+|.|+|.+++.++++.|.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~   80 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI   80 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence            4789999998755  779999999999962   224332     356899999999999999999999999999999999


Q ss_pred             EEcCC
Q psy14896        758 IQAEP  762 (813)
Q Consensus       758 V~~~P  762 (813)
                      |++||
T Consensus        81 V~~pP   85 (85)
T cd05853          81 VRGPP   85 (85)
T ss_pred             EecCC
Confidence            99998

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.60  E-value=3.3e-15  Score=122.46  Aligned_cols=77  Identities=27%  Similarity=0.446  Sum_probs=67.6

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceee-----ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE-----NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI  756 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l  756 (813)
                      ..+.+|++++|.|.+.|.|.|.|.|+|+|.++..+.++.     ....+|+|.+++.+|+|.|+|.|.|.+|.++..+.|
T Consensus        11 v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v   90 (92)
T cd05737          11 VTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTV   90 (92)
T ss_pred             EEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEEEE
Confidence            567899999999999999999999999999987655332     123579999999999999999999999999999988


Q ss_pred             EE
Q psy14896        757 SI  758 (813)
Q Consensus       757 ~V  758 (813)
                      .|
T Consensus        91 ~v   92 (92)
T cd05737          91 SV   92 (92)
T ss_pred             eC
Confidence            76

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.60  E-value=2.9e-15  Score=123.80  Aligned_cols=78  Identities=22%  Similarity=0.299  Sum_probs=68.7

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceee----------ecceEEEECCCCCCCCEEEEEEEEcCCCceE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----------NFNRILTIPNVKVEDQGEYICRASNDRSALE  751 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~----------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~  751 (813)
                      ..+..|+.++|.|.+.|+|+|.|+|+|||.+|..+....          ...++|+|.+++.+|+|.|+|.|.|..|..+
T Consensus        13 ~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~   92 (101)
T cd05859          13 EFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVKS   92 (101)
T ss_pred             EEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceEE
Confidence            567889999999999999999999999999997654211          1236899999999999999999999999999


Q ss_pred             EEEEEEEE
Q psy14896        752 SSVTISIQ  759 (813)
Q Consensus       752 ~~~~l~V~  759 (813)
                      .++.|.|+
T Consensus        93 ~t~~l~V~  100 (101)
T cd05859          93 YTFALQIQ  100 (101)
T ss_pred             EEEEEEEE
Confidence            99999986

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.59  E-value=6.5e-15  Score=112.42  Aligned_cols=69  Identities=26%  Similarity=0.582  Sum_probs=60.6

Q ss_pred             CCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEE
Q psy14896        687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS  757 (813)
Q Consensus       687 G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~  757 (813)
                      |++++|.|.+.|.|.|.|+|+|+|.++....++......|+|.+++  |+|.|+|.|.|.+|..++++.|+
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l~   69 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNIY--ESANYTCVAISSLGMIEATAQVT   69 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccceecCccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEEC
Confidence            7899999999999999999999999987766555556689999974  89999999999999999888773

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.59  E-value=5.2e-15  Score=114.36  Aligned_cols=70  Identities=29%  Similarity=0.546  Sum_probs=61.3

Q ss_pred             eEEEEEEecCCCCCeEEEEeCCcccCCCceee-ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896        689 KVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE-NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI  758 (813)
Q Consensus       689 ~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  758 (813)
                      ++.|.|.+.|.|.|.|+|+|+|..+..+.++. .....|.|.+++.+|+|.|+|.|.|.+|+.++++.|.|
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            47899999999999999999999887665443 23557899999999999999999999999999999875

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.58  E-value=8.8e-15  Score=119.05  Aligned_cols=78  Identities=33%  Similarity=0.614  Sum_probs=69.6

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ  759 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  759 (813)
                      ..+.+|+++.|.|.+.|.|.|.++|+|++..+.........+..|.|.+++.+|+|.|+|.|.|..|..+.++.|.|+
T Consensus        11 ~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   88 (88)
T cd04968          11 TYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRIYVQ   88 (88)
T ss_pred             eEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCCcEEEEEEEEEC
Confidence            557899999999999999999999999988776655444557899999999999999999999999999999999884

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.58  E-value=5.9e-15  Score=112.34  Aligned_cols=69  Identities=28%  Similarity=0.447  Sum_probs=58.8

Q ss_pred             EEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896        690 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ  759 (813)
Q Consensus       690 v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  759 (813)
                      +.|.|.+.|.|.|.++|+|||++|....++. ....|.|.++..+|+|.|+|.|.|.+|+.+...++.+.
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~~-~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~   69 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTFK-RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV   69 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEc-cCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence            4799999999999999999999997665443 34689999999999999999999999987776666553

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.58  E-value=9.4e-15  Score=115.47  Aligned_cols=72  Identities=29%  Similarity=0.492  Sum_probs=64.6

Q ss_pred             CCeEEEEEEecCCCCCeEEEEeCCcccCCCc---eeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896        687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA---YFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI  758 (813)
Q Consensus       687 G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~---~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  758 (813)
                      |++++|.|.+.|.|.|.|+|+++|..+....   ........|+|.+++.+|+|.|+|.|.|..|...+++.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence            7899999999999999999999999886543   23445678999999999999999999999999999999987

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.58  E-value=1.3e-14  Score=120.13  Aligned_cols=79  Identities=29%  Similarity=0.576  Sum_probs=69.4

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCC-cee--eecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRN-AYF--ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI  758 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~-~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  758 (813)
                      ..+..|++++|.|.+.|.|.|.|+|+|+|..+... .++  ....+.|+|.+++.+|+|.|+|.|.|.+|..+.++.|.|
T Consensus        13 ~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V   92 (95)
T cd05730          13 ATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKV   92 (95)
T ss_pred             eEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            46789999999999999999999999999988765 333  233467999999999999999999999999999999998


Q ss_pred             Ec
Q psy14896        759 QA  760 (813)
Q Consensus       759 ~~  760 (813)
                      ..
T Consensus        93 ~~   94 (95)
T cd05730          93 FA   94 (95)
T ss_pred             Ee
Confidence            64

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.57  E-value=9.5e-15  Score=113.20  Aligned_cols=67  Identities=22%  Similarity=0.381  Sum_probs=58.2

Q ss_pred             EEEEEecCCCCCeEEEEeCCcccCCCceee---------ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEE
Q psy14896        691 RLECVAFGYPVPSYNWTRRGSPLPRNAYFE---------NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS  757 (813)
Q Consensus       691 ~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~---------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~  757 (813)
                      .|.|.+.|+|+|.|+|+|||++|..+.+..         ...+.|.|.++..+|+|.|+|+|+|.+|++++++.+.
T Consensus         2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            478999999999999999999998765421         1245899999999999999999999999999988875

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.57  E-value=1.1e-14  Score=113.47  Aligned_cols=72  Identities=28%  Similarity=0.436  Sum_probs=64.2

Q ss_pred             CCeEEEEEEecCCCCCeEEEEeCCcccCCCceeee-cceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896        687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFEN-FNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI  758 (813)
Q Consensus       687 G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  758 (813)
                      |+++.|.|.+.|.|.|.++|+|++..+..+.++.. ....|.|.+++.+|+|.|+|.|.|.+|..+.++.|.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            78999999999999999999999999876654432 3468999999999999999999999999999999876

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.57  E-value=1.5e-14  Score=117.14  Aligned_cols=77  Identities=23%  Similarity=0.533  Sum_probs=67.2

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCcee-----eecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI  756 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~-----~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l  756 (813)
                      ..+.+|+.+.|.|.+.|.|.|.++|+|+|..+..+.+.     .....+|.|.++..+|+|.|+|.|.|.+|+.+.++.|
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   83 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL   83 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence            45788999999999999999999999999998765432     2234579999999999999999999999999999998


Q ss_pred             EE
Q psy14896        757 SI  758 (813)
Q Consensus       757 ~V  758 (813)
                      .|
T Consensus        84 ~v   85 (85)
T cd05857          84 DV   85 (85)
T ss_pred             EC
Confidence            76

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.57  E-value=1.1e-14  Score=112.57  Aligned_cols=70  Identities=36%  Similarity=0.659  Sum_probs=61.2

Q ss_pred             EEEEEEecCCCCCeEEEEeCCcccCCCce-eeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896        690 VRLECVAFGYPVPSYNWTRRGSPLPRNAY-FENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ  759 (813)
Q Consensus       690 v~l~C~~~g~P~p~i~W~k~g~~l~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  759 (813)
                      +.|.|.+.|.|.|.|+|+|++..+..+.. ......+|.|.+++.+|+|.|+|.|.|.+|..+.++.|.|.
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~Ve   71 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTVE   71 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEEC
Confidence            47999999999999999999988865432 33456799999999999999999999999999999999873

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.57  E-value=1.8e-14  Score=117.71  Aligned_cols=77  Identities=25%  Similarity=0.457  Sum_probs=64.5

Q ss_pred             cCCCCCCeEEEEEEecCCCC-CeEEEEe-CCcccCC-Cceee-----ecceEEEECCCCCCCCEEEEEEEEcCC-CceEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPV-PSYNWTR-RGSPLPR-NAYFE-----NFNRILTIPNVKVEDQGEYICRASNDR-SALES  752 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~-p~i~W~k-~g~~l~~-~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~N~~-G~~~~  752 (813)
                      ..+.+|++++|.|.+.|.|. |.|+|++ +|..+.. +.++.     ...++|+|.+++.+|+|.|+|.|+|.+ |..++
T Consensus        10 ~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~   89 (96)
T cd05865          10 GEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEA   89 (96)
T ss_pred             cEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEE
Confidence            45788999999999999995 7999998 7877755 33332     123689999999999999999999997 88999


Q ss_pred             EEEEEE
Q psy14896        753 SVTISI  758 (813)
Q Consensus       753 ~~~l~V  758 (813)
                      ++.|.|
T Consensus        90 s~~l~v   95 (96)
T cd05865          90 TVNVKI   95 (96)
T ss_pred             EEEEEE
Confidence            999887

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.57  E-value=1.3e-14  Score=111.82  Aligned_cols=69  Identities=30%  Similarity=0.561  Sum_probs=60.8

Q ss_pred             EEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896        690 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI  758 (813)
Q Consensus       690 v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  758 (813)
                      ++|.|.+.|.|+|.++|+|++..+..+.........|+|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            579999999999999999998887665443345678999999999999999999999999999998876

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.56  E-value=1.8e-14  Score=112.85  Aligned_cols=70  Identities=26%  Similarity=0.493  Sum_probs=61.5

Q ss_pred             eEEEEEEecCCCCCeEEEEeCCcccCCCceee----ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896        689 KVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI  758 (813)
Q Consensus       689 ~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  758 (813)
                      .+.|.|.+.|.|.|.++|+|+|..+..+.++.    ...+.|.|.++..+|+|.|+|.|.|.+|.++.++.|.|
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            47899999999999999999999986655432    23568999999999999999999999999999999876

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.56  E-value=1.8e-14  Score=117.55  Aligned_cols=77  Identities=22%  Similarity=0.321  Sum_probs=67.0

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCcee----eecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS  757 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~----~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~  757 (813)
                      ..+.+|+.+.|.|.+.|.|.|.|+|+|+|..+......    ......|+|.++..+|.|.|+|.|.|.+|+.++++.|.
T Consensus        10 ~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L~   89 (90)
T cd04972          10 TVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQVT   89 (90)
T ss_pred             EEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEEe
Confidence            45889999999999999999999999999988655431    12245899999999999999999999999999999987


Q ss_pred             E
Q psy14896        758 I  758 (813)
Q Consensus       758 V  758 (813)
                      |
T Consensus        90 v   90 (90)
T cd04972          90 V   90 (90)
T ss_pred             C
Confidence            5

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.56  E-value=1.5e-14  Score=112.86  Aligned_cols=69  Identities=28%  Similarity=0.414  Sum_probs=58.9

Q ss_pred             EEEEEEecCCCCCeEEEEeCCcccCCC-ceeee-----cceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896        690 VRLECVAFGYPVPSYNWTRRGSPLPRN-AYFEN-----FNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI  758 (813)
Q Consensus       690 v~l~C~~~g~P~p~i~W~k~g~~l~~~-~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  758 (813)
                      ++|.|.+.|.|.|.|+|+|+|..+..+ .++..     ...+|.|.+++.+|+|.|+|.|.|.+|+.++++.|.|
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            579999999999999999999998743 33321     1237999999999999999999999999999999875

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.56  E-value=2.2e-14  Score=121.01  Aligned_cols=79  Identities=27%  Similarity=0.482  Sum_probs=67.5

Q ss_pred             CCCCeEEEEEEecCCCCCeEEEEeCCcccCCC-ceee--------ecceEEEECCCC-CCCCEEEEEEEEcCCCceEEEE
Q psy14896        685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRN-AYFE--------NFNRILTIPNVK-VEDQGEYICRASNDRSALESSV  754 (813)
Q Consensus       685 ~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~-~~~~--------~~~~~L~i~~v~-~~d~G~Y~C~a~N~~G~~~~~~  754 (813)
                      ..|..++|.|.+.|.|.|.++|+|||..|... .++.        ...++|+|.++. .+|.|.|+|.|.|.+|.++.++
T Consensus        21 ~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i  100 (109)
T cd05773          21 DGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDI  100 (109)
T ss_pred             CCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEE
Confidence            35789999999999999999999999988643 2321        114689999997 6999999999999999999999


Q ss_pred             EEEEEcCCc
Q psy14896        755 TISIQAEPN  763 (813)
Q Consensus       755 ~l~V~~~P~  763 (813)
                      .|.|..+|.
T Consensus       101 ~L~~~~~p~  109 (109)
T cd05773         101 QLVSTSRPD  109 (109)
T ss_pred             EEEecCCCC
Confidence            999999884

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.56  E-value=2e-14  Score=113.77  Aligned_cols=76  Identities=24%  Similarity=0.378  Sum_probs=67.3

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI  758 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  758 (813)
                      ..+.+|+.++|.|.+.|. .|.|+|+|||.+|..+.++......|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         4 ~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~V   79 (79)
T cd04973           4 YSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVNV   79 (79)
T ss_pred             EEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCcccEEEEEeC
Confidence            467899999999999996 5699999999999877666555678999999999999999999999999988888765

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.56  E-value=2e-14  Score=117.84  Aligned_cols=79  Identities=22%  Similarity=0.475  Sum_probs=68.3

Q ss_pred             CCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceee----ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEE
Q psy14896        679 TFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----NFNRILTIPNVKVEDQGEYICRASNDRSALESSV  754 (813)
Q Consensus       679 ~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~  754 (813)
                      +....+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..+.++.    ...++|.|.++..+|+|.|+|.|.|..|..+.++
T Consensus        10 p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~   89 (92)
T cd05747          10 PRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQF   89 (92)
T ss_pred             CccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEE
Confidence            344778999999999999999999999999999887655432    2246899999999999999999999999999988


Q ss_pred             EEE
Q psy14896        755 TIS  757 (813)
Q Consensus       755 ~l~  757 (813)
                      .|+
T Consensus        90 ~l~   92 (92)
T cd05747          90 TLT   92 (92)
T ss_pred             EeC
Confidence            874

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.56  E-value=1.1e-14  Score=111.91  Aligned_cols=68  Identities=32%  Similarity=0.574  Sum_probs=60.0

Q ss_pred             EEEEEEecCCCCCeEEEEeCCcccCCCceee-ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEE
Q psy14896        690 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFE-NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS  757 (813)
Q Consensus       690 v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~  757 (813)
                      |+|.|.+.|.|.|.|+|+|+|..+..+.++. ...+.|.|.+++.+|+|.|+|.|.|.+|.++.++.|+
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~Lt   69 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVLS   69 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEeC
Confidence            5799999999999999999999887665443 2367899999999999999999999999999988874

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.55  E-value=2.2e-14  Score=115.72  Aligned_cols=75  Identities=24%  Similarity=0.534  Sum_probs=64.4

Q ss_pred             CeEEEEEEecCCCCC--eEEEEeCCcccCCCc---ee-----eecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEE
Q psy14896        688 DKVRLECVAFGYPVP--SYNWTRRGSPLPRNA---YF-----ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS  757 (813)
Q Consensus       688 ~~v~l~C~~~g~P~p--~i~W~k~g~~l~~~~---~~-----~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~  757 (813)
                      ++++|.|.+.|.|.|  .++|+|+|.+|....   ++     ....+.|.|.+++.+|+|.|+|.|.|.+|..++++.|.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~   80 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence            478999999999988  679999999886332   11     12357899999999999999999999999999999999


Q ss_pred             EEcCC
Q psy14896        758 IQAEP  762 (813)
Q Consensus       758 V~~~P  762 (813)
                      |.+||
T Consensus        81 V~~pP   85 (85)
T cd04970          81 VRGPP   85 (85)
T ss_pred             EECCC
Confidence            99987

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.54  E-value=2.5e-14  Score=110.52  Aligned_cols=72  Identities=25%  Similarity=0.481  Sum_probs=59.4

Q ss_pred             cccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe-eCCeEEEcCCccccCCeeEEEEeecCceeeEeee
Q psy14896        209 LNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL-SGGNLIINDPRQVEDRGSYHCKASNKFGSIISES  287 (813)
Q Consensus       209 g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~  287 (813)
                      |++++|.|.+.|.|.|+|.|+|++..+          ..+.++.+ .+++|.|.+. +.+|+|.|+|.|+|..|.+ +.+
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l----------~~~~r~~~~~~g~L~I~~v-~~~D~G~Y~C~A~N~~G~~-~~~   68 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELL----------VNNSRISIWDDGSLEILNI-TKLDEGSYTCFAENNRGKA-NST   68 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEec----------ccCCCEEEcCCCEEEECcC-ChhHCEEEEEEEECCCCce-eEE
Confidence            578999999999999999999999755          22345554 5789999986 8999999999999999988 556


Q ss_pred             eEEee
Q psy14896        288 VQLAF  292 (813)
Q Consensus       288 ~~l~v  292 (813)
                      +.|.|
T Consensus        69 ~~l~~   73 (73)
T cd05852          69 GVLSV   73 (73)
T ss_pred             EEEEC
Confidence            66653

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.54  E-value=3.8e-14  Score=117.82  Aligned_cols=78  Identities=24%  Similarity=0.439  Sum_probs=66.2

Q ss_pred             CcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCc-----eee----ecceEEEECCCCCCCCEEEEEEEEcCCCceE
Q psy14896        681 PEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-----YFE----NFNRILTIPNVKVEDQGEYICRASNDRSALE  751 (813)
Q Consensus       681 ~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~-----~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~  751 (813)
                      +..+.+|++++|.|.+.|.|.|.|+|+|++..+....     ++.    ...+.|+|.+++.+|+|.|+|.|.|.+|.++
T Consensus        10 ~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   89 (96)
T cd05732          10 NQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQ   89 (96)
T ss_pred             ceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcE
Confidence            3678899999999999999999999999997765432     221    2245899999999999999999999999999


Q ss_pred             EEEEEEE
Q psy14896        752 SSVTISI  758 (813)
Q Consensus       752 ~~~~l~V  758 (813)
                      .++.|.|
T Consensus        90 ~s~~l~v   96 (96)
T cd05732          90 QSMYLEV   96 (96)
T ss_pred             EEEEEeC
Confidence            9998875

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.53  E-value=2.3e-14  Score=111.95  Aligned_cols=73  Identities=34%  Similarity=0.580  Sum_probs=59.2

Q ss_pred             ccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccE-EeeCCeEEEcCCccccCCeeEEEEeecCceeeEee
Q psy14896        208 ILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRF-TLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE  286 (813)
Q Consensus       208 ~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~  286 (813)
                      ||+++.|.|.+.|.|.|.|.|+|+|..+.          .+.++ ...+++|.|.+. +.+|+|.|+|.|.|..|.. +.
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~----------~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~A~N~~G~~-~~   68 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLS----------VDRRHLVLSSGTLRISRV-ALHDQGQYECQAVNIVGSQ-RT   68 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECC----------CCCCeEEccCCeEEEeeC-CHHhCEEEEEEEEeCCCce-eE
Confidence            57889999999999999999999998652          12233 345778988886 8999999999999999987 55


Q ss_pred             eeEEee
Q psy14896        287 SVQLAF  292 (813)
Q Consensus       287 ~~~l~v  292 (813)
                      ++.|.|
T Consensus        69 ~~~L~V   74 (74)
T cd05745          69 VAQLTV   74 (74)
T ss_pred             EEEEeC
Confidence            666654

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.53  E-value=3.3e-14  Score=117.88  Aligned_cols=75  Identities=25%  Similarity=0.461  Sum_probs=63.4

Q ss_pred             CCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCc-----eee----ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEE
Q psy14896        684 PKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-----YFE----NFNRILTIPNVKVEDQGEYICRASNDRSALESSV  754 (813)
Q Consensus       684 ~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~-----~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~  754 (813)
                      +..|+.++|.|.+.|.|.|.|+|++++..+....     ++.    ...+.|.|.+++.+|+|.|+|.|.|.+|.++.++
T Consensus        14 ~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~   93 (97)
T cd05869          14 MELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSM   93 (97)
T ss_pred             EEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeEEE
Confidence            4568999999999999999999999998775432     111    1235899999999999999999999999999999


Q ss_pred             EEEE
Q psy14896        755 TISI  758 (813)
Q Consensus       755 ~l~V  758 (813)
                      .|.|
T Consensus        94 ~l~v   97 (97)
T cd05869          94 YLEV   97 (97)
T ss_pred             EEEC
Confidence            9876

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.53  E-value=3.3e-14  Score=111.79  Aligned_cols=70  Identities=36%  Similarity=0.604  Sum_probs=57.9

Q ss_pred             EEEEEEecCCCCCeEEEEeCCcccCCCc---eeeecceEEEECCCCCCCCEEEEEEEEcCCCceEE--EEEEEEE
Q psy14896        690 VRLECVAFGYPVPSYNWTRRGSPLPRNA---YFENFNRILTIPNVKVEDQGEYICRASNDRSALES--SVTISIQ  759 (813)
Q Consensus       690 v~l~C~~~g~P~p~i~W~k~g~~l~~~~---~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~--~~~l~V~  759 (813)
                      ++|.|.+.|.|.|.|+|+|+|.+|..+.   .+....+.|.|.+++.+|+|.|.|.|.|.+|...+  .++|.|.
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~   75 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII   75 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence            5799999999999999999999986553   22334568999999999999999999999998754  5566553

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.53  E-value=4.2e-14  Score=111.53  Aligned_cols=68  Identities=22%  Similarity=0.411  Sum_probs=58.2

Q ss_pred             EEEEEecCCCCCeEEEEeCCcccCCCceee-----------ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896        691 RLECVAFGYPVPSYNWTRRGSPLPRNAYFE-----------NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI  758 (813)
Q Consensus       691 ~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~-----------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  758 (813)
                      .|.|.+.|.|+|.|+|+|||++|..+.+..           ...+.|+|.+++.+|+|.|+|.|+|.+|++++++.|..
T Consensus         2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~~   80 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAHF   80 (81)
T ss_pred             eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEeee
Confidence            478999999999999999999997665321           12457999999999999999999999999999888764

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.52  E-value=7.7e-14  Score=113.13  Aligned_cols=78  Identities=32%  Similarity=0.502  Sum_probs=66.2

Q ss_pred             CcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCce-eeecceEEEECCCCCCCCEEEEEEEEcCCCce-EEEEEEEE
Q psy14896        681 PEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAY-FENFNRILTIPNVKVEDQGEYICRASNDRSAL-ESSVTISI  758 (813)
Q Consensus       681 ~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V  758 (813)
                      .+.+.+|++++|.|.+.|. .|.|.|+|+|..+..... +....++|+|.+++.+|+|.|.|.|.|.+|.. +..+.|.|
T Consensus        12 ~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V   90 (91)
T cd05740          12 NQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNV   90 (91)
T ss_pred             ccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence            3678999999999999999 999999999998865542 23345689999999999999999999999985 55788877


Q ss_pred             E
Q psy14896        759 Q  759 (813)
Q Consensus       759 ~  759 (813)
                      .
T Consensus        91 ~   91 (91)
T cd05740          91 N   91 (91)
T ss_pred             C
Confidence            3

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.52  E-value=6.3e-14  Score=112.76  Aligned_cols=84  Identities=33%  Similarity=0.647  Sum_probs=69.1

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCee
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS  271 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~  271 (813)
                      |+..|.+..+..|     ++++|.|.+.|.|.|.+.|+|+|..+          ..+.++...++.|.|.+. +.+|+|.
T Consensus         2 ~~~~p~~~~~~~G-----~~~~l~C~~~g~p~p~v~W~k~g~~~----------~~~~~~~~~~~~L~i~~~-~~~D~G~   65 (85)
T cd05728           2 WLKVISDTEADIG-----SSLRWECKASGNPRPAYRWLKNGQPL----------ASENRIEVEAGDLRITKL-SLSDSGM   65 (85)
T ss_pred             ccccCCccEEcCC-----CcEEEEEEeeEeCCCEEEEEECCEEC----------CCCCeEEEeCCEEEEeeC-CHHHCEE
Confidence            5566788888777     66999999999999999999999865          233456667888998885 8999999


Q ss_pred             EEEEeecCceeeEeeeeEEee
Q psy14896        272 YHCKASNKFGSIISESVQLAF  292 (813)
Q Consensus       272 Y~C~a~n~~g~~~s~~~~l~v  292 (813)
                      |+|.|.|..|.. +.++.|.|
T Consensus        66 Y~C~a~N~~G~~-~~~~~l~V   85 (85)
T cd05728          66 YQCVAENKHGTI-YASAELAV   85 (85)
T ss_pred             EEEEEECCCCeE-EEEEEEEC
Confidence            999999999987 55666653

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.52  E-value=8.7e-14  Score=113.82  Aligned_cols=89  Identities=38%  Similarity=0.764  Sum_probs=72.0

Q ss_pred             CceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCC
Q psy14896        190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR  269 (813)
Q Consensus       190 P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~  269 (813)
                      |.|+.+|.+..+.++  ..|+.++|.|.+.|+|.|.|+|+|++..+.        .....++...++.|.|.+....+|+
T Consensus         2 P~f~~~p~~~~~~~~--~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~--------~~~~~~~~~~~~~L~i~~~~~~~d~   71 (91)
T cd04967           2 PVFEEQPDDTIFPEE--SDEGKVSLNCRARGSPPPTYRWLMNGTEID--------DEPDSRYSLVGGNLVISNPSKAKDA   71 (91)
T ss_pred             CeeEeCCCCEEccCC--CCCCEEEEEEeeeEcCCCEEEEEECCEECC--------CCCCCCEEEECCEEEEecCCccCCC
Confidence            789999999887765  335779999999999999999999997652        2234566677889999876446999


Q ss_pred             eeEEEEeecCceeeEeeee
Q psy14896        270 GSYHCKASNKFGSIISESV  288 (813)
Q Consensus       270 G~Y~C~a~n~~g~~~s~~~  288 (813)
                      |.|+|.|+|..|.+.|..+
T Consensus        72 G~Y~C~a~N~~G~~~S~~~   90 (91)
T cd04967          72 GRYQCLASNIVGTVLSREA   90 (91)
T ss_pred             EEEEEEEEcCCCEEEeccc
Confidence            9999999999999877644

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.52  E-value=4.6e-14  Score=117.25  Aligned_cols=78  Identities=28%  Similarity=0.507  Sum_probs=64.3

Q ss_pred             CcCCCCCCeEEEEEEecCCCCCeEEEEeC--CcccCC-----Cceeee----cceEEEECCCCCCCCEEEEEEEEcCCCc
Q psy14896        681 PEAPKAGDKVRLECVAFGYPVPSYNWTRR--GSPLPR-----NAYFEN----FNRILTIPNVKVEDQGEYICRASNDRSA  749 (813)
Q Consensus       681 ~~~~~~G~~v~l~C~~~g~P~p~i~W~k~--g~~l~~-----~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~N~~G~  749 (813)
                      +..+.+|++++|.|.+.|.|.|.|+|+|+  |..+..     +.++..    ...+|+|.+++.+|+|.|+|.|.|.+|.
T Consensus        10 ~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   89 (98)
T cd05870          10 NETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIGG   89 (98)
T ss_pred             cEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCCc
Confidence            46788999999999999999999999994  444432     123321    2468999999999999999999999999


Q ss_pred             eEEEEEEEE
Q psy14896        750 LESSVTISI  758 (813)
Q Consensus       750 ~~~~~~l~V  758 (813)
                      .+.++.|.|
T Consensus        90 ~~~~~~l~~   98 (98)
T cd05870          90 HQKSMYLDI   98 (98)
T ss_pred             ceeEEEEeC
Confidence            999999875

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>PHA02911 C-type lectin-like protein; Provisional

Probab=99.51  E-value=6.4e-14  Score=122.34  Aligned_cols=108  Identities=15%  Similarity=0.121  Sum_probs=79.4

Q ss_pred             CCCchhhhccCCeEEEEecCCcCCH--HHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeE
Q psy14896         27 LRCPQHWVQYRDSCYRFVKSPLKTR--NDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWV  104 (813)
Q Consensus        27 ~~Cp~~w~~~~~~Cy~~~~~~~~~~--~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~  104 (813)
                      .+||.+|+.|+++||+|+... ++|  +.|+++|..+||+|+. ++.||++||+++          |.|+.     +.|.
T Consensus       101 ~pC~~nW~~H~nkCYlFS~~s-~sWsW~~Srr~C~~kGATLLk-~sdEELeFIqn~----------wkGks-----~~~f  163 (213)
T PHA02911        101 PICSRDWINHMGICLLSLGEE-VGFRMEIAKRFCEKKDADLIG-KIDEEKKALENI----------WTGND-----HSRF  163 (213)
T ss_pred             CCCchhhHhhCCEEEEEeccc-cccchhHHHHHHHhcCCEecc-CcHHHHHHHHHH----------Hhccc-----cceE
Confidence            458899999999999999984 555  9999999999999999 777999999864          44432     3567


Q ss_pred             EcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        105 NEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       105 W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      |+||..-..  .       .+..+.|+.+....-...-.+..-.|+....++|++.
T Consensus       164 WID~r~ngS--t-------~n~s~sCA~Is~~~~~~~~~V~sesCs~~~~wICqK~  210 (213)
T PHA02911        164 WIDNRAAAS--T-------FDPVNECAIGTQNHIPEVPEVLKSPCDERHSFICIKK  210 (213)
T ss_pred             EecCccccc--e-------ecCCCCeEEEEcccccCCCceEccccCCCceEEEEec
Confidence            776631110  0       0125688888654222234666899999999999985

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.51  E-value=6.6e-14  Score=112.76  Aligned_cols=76  Identities=33%  Similarity=0.630  Sum_probs=65.5

Q ss_pred             CCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceee--ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896        683 APKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE--NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI  758 (813)
Q Consensus       683 ~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  758 (813)
                      .+..|++++|.|.+.|.|.|.++|+|+|..+.......  ....+|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus         5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v   82 (82)
T cd05856           5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV   82 (82)
T ss_pred             eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence            45679999999999999999999999999886554332  23468999999999999999999999999999888875

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.51  E-value=8.7e-14  Score=109.38  Aligned_cols=75  Identities=27%  Similarity=0.486  Sum_probs=61.3

Q ss_pred             cccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeeee
Q psy14896        209 LNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESV  288 (813)
Q Consensus       209 g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~  288 (813)
                      |++++|.|.+.|.|.|+|+|||+|..+...       ....++...+++|.|.+. +.+|+|.|+|.|.|..|.. ...+
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~-------~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a~N~~G~~-~~~~   71 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGT-------DPDPRRHVSSGALILTDV-QPSDTAVYQCEARNRHGNL-LANA   71 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCC-------CCCceEEeeCCEEEECCC-ChhhCEEEEEEEECCCCeE-EEEE
Confidence            578999999999999999999999866321       123356667888999886 8999999999999999987 5567


Q ss_pred             EEee
Q psy14896        289 QLAF  292 (813)
Q Consensus       289 ~l~v  292 (813)
                      .|.|
T Consensus        72 ~l~V   75 (76)
T cd05867          72 HVHV   75 (76)
T ss_pred             EEEE
Confidence            6665

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.51  E-value=1.7e-14  Score=118.49  Aligned_cols=78  Identities=36%  Similarity=0.632  Sum_probs=69.9

Q ss_pred             CcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceee----ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEE
Q psy14896        681 PEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI  756 (813)
Q Consensus       681 ~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l  756 (813)
                      ...+.+|++++|.|.+.|.|.|.++|+++|..+..+.++.    ....+|.|.++..+|+|.|+|.|.|..|..++++.|
T Consensus         9 ~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l   88 (90)
T PF07679_consen    9 DVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATASVNL   88 (90)
T ss_dssp             EEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEEEE
T ss_pred             CEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEEEEE
Confidence            3678899999999999999999999999999998765432    346789999999999999999999999999999999


Q ss_pred             EE
Q psy14896        757 SI  758 (813)
Q Consensus       757 ~V  758 (813)
                      .|
T Consensus        89 ~V   90 (90)
T PF07679_consen   89 TV   90 (90)
T ss_dssp             EE
T ss_pred             EC
Confidence            87

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.51  E-value=9.7e-14  Score=113.29  Aligned_cols=75  Identities=29%  Similarity=0.519  Sum_probs=63.8

Q ss_pred             CCeEEEEEEecCCCCCeEEEEeCCccc--------CCCceee-ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEE
Q psy14896        687 GDKVRLECVAFGYPVPSYNWTRRGSPL--------PRNAYFE-NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS  757 (813)
Q Consensus       687 G~~v~l~C~~~g~P~p~i~W~k~g~~l--------~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~  757 (813)
                      |++++|.|.+.|.|.|.|.|+|+|..+        ....++. ..++.|+|.+++.+|+|.|+|.|.|.+|.....+.|.
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   80 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLE   80 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEE
Confidence            789999999999999999999998753        1222333 2356899999999999999999999999999999999


Q ss_pred             EEcC
Q psy14896        758 IQAE  761 (813)
Q Consensus       758 V~~~  761 (813)
                      |.+.
T Consensus        81 V~~~   84 (90)
T cd05726          81 VTDV   84 (90)
T ss_pred             Eeec
Confidence            9864

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd00037 CLECT C-type lectin (CTL)/C-type lectin-like (CTLD) domain

Probab=99.51  E-value=7.9e-14  Score=121.33  Aligned_cols=115  Identities=26%  Similarity=0.384  Sum_probs=95.8

Q ss_pred             eEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcCCCC-CCccccc
Q psy14896         39 SCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDGTN-LNELDAA  117 (813)
Q Consensus        39 ~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~dgs~-~~~~~~~  117 (813)
                      .||+++.. .++|.+|+..|+.+||+|++|++.+|++||.+.+.. .....+|+|+.+....+.|.|.||+. ..+ ..|
T Consensus         1 ~Cy~~~~~-~~~~~~A~~~C~~~~~~L~~~~~~~e~~~i~~~~~~-~~~~~~wvg~~~~~~~~~~~~~~~~~~~~~-~~w   77 (116)
T cd00037           1 SCYKFSTE-KLTWEEAQEYCRSLGGHLASIHSEEENDFLASLLKK-SSSSDVWIGLNDLSSEGTWKWSDGSPLVDY-TNW   77 (116)
T ss_pred             CCEEEcCC-ccCHHHHHHHHHHcCCEEcccCCHHHHHHHHHHHhC-CCCCCEEEcccccCcCCCeEecCCCccccc-cCC
Confidence            49999998 599999999999999999999999999999999854 24568999999887788999999999 555 466


Q ss_pred             cCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeee
Q psy14896        118 FLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEA  159 (813)
Q Consensus       118 ~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~  159 (813)
                      ..++|.......|+.+....   ...|.+..|.....|+|+.
T Consensus        78 ~~~~~~~~~~~~C~~~~~~~---~~~~~~~~C~~~~~~iC~~  116 (116)
T cd00037          78 APGEPNPGGSEDCVVLSSSS---DGKWNDVSCSSKLPFICEK  116 (116)
T ss_pred             CCCCcCCCCCCCeeEEccCC---CCCccCCCCCCCceeeecC
Confidence            66676455578999986654   3445599999999999974

CLECT: C-type lectin (CTL)/C-type lectin-like (CTLD) domain; protein domains homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. This group is chiefly comprised of eukaryotic CTLDs, but contains some, as yet functionally uncharacterized, bacterial CTLDs. Many CTLDs are calcium-dependent carbohydrate binding modules; other CTLDs bind protein ligands, lipids, and inorganic surfaces, including CaCO3 and ice. Animal C-type lectins are involved in such functions as extracellular matrix organization, endocytosis, complement activation, pathogen recognition, and cell-cell interactions. For example: mannose-binding lectin and lung surfactant proteins A and D bind carbohydrates on surfaces (e.g. pathogens, allergens, necrotic, and apoptotic cells) and mediate functions associated with killing and phagocytosis; P (platlet)-, E (endothelial)-, and L (leukocyte)- selectins (sels) mediate the initia

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.50  E-value=8.8e-14  Score=113.56  Aligned_cols=77  Identities=26%  Similarity=0.440  Sum_probs=66.9

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceee----e-cceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----N-FNRILTIPNVKVEDQGEYICRASNDRSALESSVTI  756 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~----~-~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l  756 (813)
                      +.+.+|+.+.|.|.+.|.|.|.+.|||+|..+..+.++.    . ...+|.|.+++.+|+|.|+|.|.|.+|.++.++.|
T Consensus        11 v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v   90 (92)
T cd05891          11 VTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVTV   90 (92)
T ss_pred             EEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEEE
Confidence            678999999999999999999999999999887654331    1 12479999999999999999999999999999988


Q ss_pred             EE
Q psy14896        757 SI  758 (813)
Q Consensus       757 ~V  758 (813)
                      .|
T Consensus        91 ~~   92 (92)
T cd05891          91 SV   92 (92)
T ss_pred             EC
Confidence            75

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.50  E-value=8.3e-14  Score=110.06  Aligned_cols=72  Identities=35%  Similarity=0.522  Sum_probs=61.9

Q ss_pred             CCeEEEEEEecCCCCCeEEEEeCCcccCCCceee----ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896        687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI  758 (813)
Q Consensus       687 G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  758 (813)
                      |++++|.|.+.|.|.|.|+|+|++..+....++.    .....|+|.+++.+|+|.|+|.|.|..|...+.+.+.+
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~   76 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL   76 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence            7899999999999999999999998887655432    22468999999999999999999999999887776655

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.50  E-value=6.1e-14  Score=109.15  Aligned_cols=70  Identities=41%  Similarity=0.820  Sum_probs=60.6

Q ss_pred             EEEEEEecCCCCCeEEEEeCCcccCCCc-eeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896        690 VRLECVAFGYPVPSYNWTRRGSPLPRNA-YFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ  759 (813)
Q Consensus       690 v~l~C~~~g~P~p~i~W~k~g~~l~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  759 (813)
                      ++|.|.+.|.|.|.++|+|++..+..+. ........|.|.+++.+|+|.|+|.|.|..|..+.++.|.|+
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   71 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTVE   71 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEEC
Confidence            4799999999999999999998876543 223345789999999999999999999999999999999873

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.50  E-value=2.1e-13  Score=110.91  Aligned_cols=87  Identities=30%  Similarity=0.471  Sum_probs=69.6

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccC
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED  268 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d  268 (813)
                      ||.|...|.+..+.+|     ++++|.|.+.|.|.|.++|+|++..+.          ........+++|.|.+. +.+|
T Consensus         1 p~~~~~~p~~~~~~~g-----~~v~l~C~~~g~P~p~v~W~k~~~~~~----------~~~~~~~~~~~L~i~~v-~~~D   64 (88)
T cd04968           1 PSIIVVFPKDTYALKG-----QNVTLECFALGNPVPQIKWRKVDGSMP----------SSAEISMSGAVLKIPNI-QFED   64 (88)
T ss_pred             CCcEEECCCceEEeCC-----CcEEEEEEeeEeCCCEEEEEECCCcCC----------CccEEEEeCCEEEECCC-Cccc
Confidence            4667778888888777     669999999999999999999987541          12223356788888885 8999


Q ss_pred             CeeEEEEeecCceeeEeeeeEEee
Q psy14896        269 RGSYHCKASNKFGSIISESVQLAF  292 (813)
Q Consensus       269 ~G~Y~C~a~n~~g~~~s~~~~l~v  292 (813)
                      +|.|+|.|.|..|.. +..+.|.|
T Consensus        65 ~G~Y~C~a~N~~G~~-~~~~~l~V   87 (88)
T cd04968          65 EGTYECEAENIKGKD-THQGRIYV   87 (88)
T ss_pred             CEEEEEEEEECCCcE-EEEEEEEE
Confidence            999999999999986 55666665

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.49  E-value=9.4e-14  Score=105.73  Aligned_cols=68  Identities=25%  Similarity=0.362  Sum_probs=56.7

Q ss_pred             EEEEEEecCCCCCeEEEEeCCcccCCC-ceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEE
Q psy14896        690 VRLECVAFGYPVPSYNWTRRGSPLPRN-AYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS  757 (813)
Q Consensus       690 v~l~C~~~g~P~p~i~W~k~g~~l~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~  757 (813)
                      +.|.|.+.|.|+|.++|+|||.++..+ .++.....+|.|.+++.+|+|.|+|.|+|..........++
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~   69 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTIT   69 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEE
Confidence            479999999999999999999998765 44544566899999999999999999999877655555444

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.49  E-value=1.2e-13  Score=108.44  Aligned_cols=70  Identities=31%  Similarity=0.604  Sum_probs=58.2

Q ss_pred             EEEEEEecCCCCCeEEEEeCCcccC---CCcee--eecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896        690 VRLECVAFGYPVPSYNWTRRGSPLP---RNAYF--ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ  759 (813)
Q Consensus       690 v~l~C~~~g~P~p~i~W~k~g~~l~---~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  759 (813)
                      ++|.|.+.|.|.|.|+|+|+|....   ...++  ....+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V~   75 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTVL   75 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEEC
Confidence            4799999999999999999986432   12222  2335689999999999999999999999999999999883

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.49  E-value=8.5e-14  Score=113.31  Aligned_cols=73  Identities=26%  Similarity=0.518  Sum_probs=59.0

Q ss_pred             CCeEEEEEEecCCCCCeEEEEeCC----cccCCCc--e-----------eeecceEEEECCCCCCCCEEEEEEEEcCCCc
Q psy14896        687 GDKVRLECVAFGYPVPSYNWTRRG----SPLPRNA--Y-----------FENFNRILTIPNVKVEDQGEYICRASNDRSA  749 (813)
Q Consensus       687 G~~v~l~C~~~g~P~p~i~W~k~g----~~l~~~~--~-----------~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~  749 (813)
                      |++++|.|.+.|.|.|.|+|+|++    ..+....  .           +......|.|.+++.+|+|.|+|.|.|.+|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            789999999999999999999963    3332111  0           1122357999999999999999999999999


Q ss_pred             eEEEEEEEEE
Q psy14896        750 LESSVTISIQ  759 (813)
Q Consensus       750 ~~~~~~l~V~  759 (813)
                      ..+++.|.|.
T Consensus        81 ~~~sa~L~V~   90 (90)
T cd04974          81 SHHSAWLTVL   90 (90)
T ss_pred             ccCCEEEEeC
Confidence            9999999883

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.49  E-value=1.2e-13  Score=106.94  Aligned_cols=70  Identities=24%  Similarity=0.474  Sum_probs=54.9

Q ss_pred             EEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEee---CC--eEEEcCCccccCCeeEEEEeecCceeeEee
Q psy14896        212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS---GG--NLIINDPRQVEDRGSYHCKASNKFGSIISE  286 (813)
Q Consensus       212 v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~---~~--~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~  286 (813)
                      |+|+|.+.|.|.|.|.|||||+.|.         ..+.++.+.   +|  +|.|.+. +.+|+|.|+|.|.|..|.+ +.
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~---------~~~~r~~~~~~~~g~~~L~I~~~-~~~D~G~Y~C~A~N~~G~~-~~   69 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQ---------YNTDRISLYQDNSGRVTLLIKNV-NKKDAGWYTVSAVNEAGVA-TC   69 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECc---------CCCCeEEEEEcCCCcEEEEECCC-ChhhCEEEEEEEEcCcCeE-EE
Confidence            5799999999999999999998662         122344432   23  6888885 8999999999999999988 55


Q ss_pred             eeEEee
Q psy14896        287 SVQLAF  292 (813)
Q Consensus       287 ~~~l~v  292 (813)
                      .+.|.|
T Consensus        70 ~a~L~V   75 (75)
T cd05892          70 HARLDV   75 (75)
T ss_pred             EEEEeC
Confidence            677654

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.49  E-value=1.4e-13  Score=108.25  Aligned_cols=72  Identities=26%  Similarity=0.477  Sum_probs=59.4

Q ss_pred             CcCCCCCCeEEEEEEecCCCCC-eEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEE-EEEE
Q psy14896        681 PEAPKAGDKVRLECVAFGYPVP-SYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALES-SVTI  756 (813)
Q Consensus       681 ~~~~~~G~~v~l~C~~~g~P~p-~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~-~~~l  756 (813)
                      +..+.+|+++.|.|.+.|.|.| .|+|+|||.++...  .....+.|.|..+  .|+|.|.|+|+|.+|...+ .++|
T Consensus         7 ~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~--~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~a~~   80 (81)
T cd05749           7 DLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP--PAPSPSVLNVPGL--NETSKFSCEAHNAKGVTTSRTGTV   80 (81)
T ss_pred             ceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC--CCCCCCEEEEccc--cCCeEEEEEEEeccCcEEeeeEEe
Confidence            3678999999999999999999 79999999998651  2234568999887  5889999999999997654 5554

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.48  E-value=1.9e-13  Score=115.08  Aligned_cols=95  Identities=27%  Similarity=0.549  Sum_probs=71.0

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcC----Cc
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIIND----PR  264 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~----~~  264 (813)
                      ||.|+..|.+..+.+|     ++++|.|.+.|.|.|.|.|||+|..+....    ......+....++.+.+..    .+
T Consensus         1 ~P~i~~~p~~~~v~~G-----~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~   71 (100)
T cd07693           1 PPRIVEHPSDLIVSKG-----DPATLNCKAEGRPTPTIQWLKNGQPLETDK----DDPRSHRIVLPSGSLFFLRVVHGRK   71 (100)
T ss_pred             CCeEEecCceeEEcCC-----CeEEEEeeCCcCCCCEEEEEECCEECcccc----CCCCcceEEecCCcEEEEEeeccCC
Confidence            5889999999998887     669999999999999999999998764210    0011222334455543221    12


Q ss_pred             cccCCeeEEEEeecCceeeEeeeeEEee
Q psy14896        265 QVEDRGSYHCKASNKFGSIISESVQLAF  292 (813)
Q Consensus       265 ~~~d~G~Y~C~a~n~~g~~~s~~~~l~v  292 (813)
                      +.+|+|.|+|.|+|..|.+.+..+.|.|
T Consensus        72 ~~~D~G~Y~C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          72 GRSDEGVYVCVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             CcCcCEEEEEEEEccccceecceEEEEe
Confidence            6899999999999999997788888876

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.48  E-value=1.3e-13  Score=111.50  Aligned_cols=76  Identities=28%  Similarity=0.501  Sum_probs=63.2

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEe-CCcccCCCceeee----cceEEEECCCCCCCCEEEEEEEEcCCCce-EEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTR-RGSPLPRNAYFEN----FNRILTIPNVKVEDQGEYICRASNDRSAL-ESSVT  755 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k-~g~~l~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~  755 (813)
                      ..+.+|+++.|.|.+.|.|. .++|++ +|.++..+.++..    ....|+|.++..+|+|.|+|.|+|..|.. .+++.
T Consensus        10 ~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~   88 (92)
T cd05866          10 VELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVV   88 (92)
T ss_pred             eEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEE
Confidence            56789999999999999998 999998 4677765554432    12489999999999999999999999985 67788


Q ss_pred             EEE
Q psy14896        756 ISI  758 (813)
Q Consensus       756 l~V  758 (813)
                      |.|
T Consensus        89 l~~   91 (92)
T cd05866          89 LEI   91 (92)
T ss_pred             EEE
Confidence            776

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.48  E-value=1.4e-13  Score=107.45  Aligned_cols=70  Identities=26%  Similarity=0.459  Sum_probs=58.9

Q ss_pred             EEEEEEecCCCCCeEEEEeCCcccC--CCcee-eecceEEEECCCCCCCCEEEEEEEEcCCCce-EEEEEEEEE
Q psy14896        690 VRLECVAFGYPVPSYNWTRRGSPLP--RNAYF-ENFNRILTIPNVKVEDQGEYICRASNDRSAL-ESSVTISIQ  759 (813)
Q Consensus       690 v~l~C~~~g~P~p~i~W~k~g~~l~--~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~  759 (813)
                      ++|.|.+.|.|.|.|+|+|++.++.  .+.++ ...++.|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|+
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v~   74 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYVR   74 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEEC
Confidence            4799999999999999999999886  33333 2345689999999999999999999999984 778888873

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.48  E-value=2.4e-13  Score=111.45  Aligned_cols=85  Identities=21%  Similarity=0.432  Sum_probs=67.6

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEee----CCeEEEcCCc
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS----GGNLIINDPR  264 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~  264 (813)
                      ||.|+..|.+..+.+|     +.+.|.|.+.|+|.|.+.|+|+|..+.          .+.++.+.    .++|.|.+. 
T Consensus         3 ~~~~~~~p~~~~~~~G-----~~~~L~C~~~g~P~p~v~W~k~g~~l~----------~~~~~~~~~~~~~~~L~i~~~-   66 (92)
T cd05747           3 PATILTKPRSLTVSEG-----ESARFSCDVDGEPAPTVTWMREGQIIV----------SSQRHQITSTEYKSTFEISKV-   66 (92)
T ss_pred             CCcccccCccEEEeCC-----CcEEEEEEEeecCCCEEEEEECCEECC----------CCCcEEEEEcCCeeEEEECCC-
Confidence            6889999999998888     669999999999999999999997652          22233332    346788775 


Q ss_pred             cccCCeeEEEEeecCceeeEeeeeEE
Q psy14896        265 QVEDRGSYHCKASNKFGSIISESVQL  290 (813)
Q Consensus       265 ~~~d~G~Y~C~a~n~~g~~~s~~~~l  290 (813)
                      +.+|+|.|+|.|+|..|.. +..+.|
T Consensus        67 ~~~D~G~Y~C~a~N~~G~~-~~~~~l   91 (92)
T cd05747          67 QMSDEGNYTVVVENSEGKQ-EAQFTL   91 (92)
T ss_pred             CcccCEeEEEEEEcCCCCE-eEEEEe
Confidence            8999999999999999976 444443

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.48  E-value=1.4e-13  Score=106.84  Aligned_cols=70  Identities=30%  Similarity=0.528  Sum_probs=54.9

Q ss_pred             EEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEee-C--C--eEEEcCCccccCCeeEEEEeecCceeeEee
Q psy14896        212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS-G--G--NLIINDPRQVEDRGSYHCKASNKFGSIISE  286 (813)
Q Consensus       212 v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~-~--~--~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~  286 (813)
                      |+|+|.+.|.|.|.|.|+|++..+.         ....++.+. +  +  +|.|.+. +.+|+|.|+|.|.|..|.+ +.
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~---------~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~A~N~~G~~-~~   69 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLT---------HNTDRVSMHQDNCGYICLLIQGA-TKEDAGWYTVSAKNEAGIV-SC   69 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECC---------CCCCeEEEEEcCCCEEEEEECCC-CHHHCEEEEEEEEcCCCEE-EE
Confidence            5799999999999999999998662         122344443 2  2  4777775 8999999999999999998 66


Q ss_pred             eeEEee
Q psy14896        287 SVQLAF  292 (813)
Q Consensus       287 ~~~l~v  292 (813)
                      ++.|.|
T Consensus        70 ~a~L~V   75 (75)
T cd05893          70 TARLDV   75 (75)
T ss_pred             EEEEeC
Confidence            677764

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.48  E-value=2e-13  Score=106.89  Aligned_cols=75  Identities=27%  Similarity=0.479  Sum_probs=57.8

Q ss_pred             cccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeeee
Q psy14896        209 LNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESV  288 (813)
Q Consensus       209 g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~  288 (813)
                      |++++|.|.+.|+|.|+|+|+|||+++...       .........++.|.|.+ ++.+|+|.|+|.|+|..|.+ +.++
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~-------~~~~~~~~~~~~l~i~~-v~~~D~G~Y~C~A~N~~G~~-~~~~   71 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIA-------PTDPSRKVDGDTIIFSK-VQERSSAVYQCNASNEYGYL-LANA   71 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEcccc-------CCCceEEecCCEEEECC-CCHhhCEEEEEEEEcCCCEE-EEEE
Confidence            578999999999999999999999876311       11122234455666666 58999999999999999998 6667


Q ss_pred             EEee
Q psy14896        289 QLAF  292 (813)
Q Consensus       289 ~l~v  292 (813)
                      .|.|
T Consensus        72 ~l~v   75 (76)
T cd05868          72 FVNV   75 (76)
T ss_pred             EEEe
Confidence            7765

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.48  E-value=1.9e-13  Score=107.06  Aligned_cols=72  Identities=29%  Similarity=0.498  Sum_probs=61.3

Q ss_pred             CCeEEEEEEecCCCCCeEEEEe-CCcccCCCcee-eecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896        687 GDKVRLECVAFGYPVPSYNWTR-RGSPLPRNAYF-ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI  758 (813)
Q Consensus       687 G~~v~l~C~~~g~P~p~i~W~k-~g~~l~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  758 (813)
                      |+.+.|.|.+.|.|.|.++|++ ++..+....+. ....++|.|..+..+|+|.|+|.|.|..|.++.++.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   74 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI   74 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence            7899999999999999999997 56666554433 234578999999999999999999999999999988875

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.47  E-value=3e-13  Score=111.74  Aligned_cols=89  Identities=33%  Similarity=0.639  Sum_probs=69.3

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCc----ccc
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPR----QVE  267 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~----~~~  267 (813)
                      |+.+|.+..+.+|     +++.|.|.+.|.|.|.|.|+|||..+...       .........+++++|.+..    +.+
T Consensus         2 f~~~P~~~~~~~g-----~~v~l~C~v~g~P~p~i~W~k~g~~l~~~-------~~~~~~~~~~~~l~i~~v~~~~~~~~   69 (95)
T cd05722           2 FLSEPSDIVAVRG-----GPVVLNCSAEGEPPPKIEWKKDGVLLNLV-------SDERRQQLPNGSLLITSVVHSKHNKP   69 (95)
T ss_pred             cEECCCCeEEcCC-----CCEEEeeecccCCCCEEEEEECCeECccc-------cCcceEEccCCeEEEeeeeccCCCCC
Confidence            6677888888776     77999999999999999999999866321       1112334457777776531    579


Q ss_pred             CCeeEEEEeecC-ceeeEeeeeEEee
Q psy14896        268 DRGSYHCKASNK-FGSIISESVQLAF  292 (813)
Q Consensus       268 d~G~Y~C~a~n~-~g~~~s~~~~l~v  292 (813)
                      |+|.|+|.|.|. .|...+..+.|.|
T Consensus        70 D~G~Y~C~a~N~~~G~~~s~~~~l~v   95 (95)
T cd05722          70 DEGFYQCVAQNDSLGSIVSRTARLTV   95 (95)
T ss_pred             cCEEEEEEEECCccCcEEEeeeEEeC
Confidence            999999999999 9999888888875

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.47  E-value=1.3e-13  Score=103.40  Aligned_cols=65  Identities=22%  Similarity=0.456  Sum_probs=52.4

Q ss_pred             EEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeeeeEEe
Q psy14896        212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLA  291 (813)
Q Consensus       212 v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~  291 (813)
                      ++|.|.+.|.|.|.++|||||++|..              ....+.|.|.+. ..+|+|.|+|.|+|..|.. +.++.++
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~--------------~~~~~~L~i~~v-~~~D~G~YtC~a~N~~g~~-~~~~~~~   64 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISG--------------KHSQHSLQIKDV-TEASAGTYTLVLWNSAAGL-EKRISLE   64 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECcc--------------cCCcCEEEECCC-CHHHCEEEEEEEEECCccE-EEEEEEE
Confidence            57999999999999999999987621              012457888885 8999999999999999975 5556665


Q ss_pred             e
Q psy14896        292 F  292 (813)
Q Consensus       292 v  292 (813)
                      +
T Consensus        65 l   65 (67)
T cd05863          65 L   65 (67)
T ss_pred             E
Confidence            4

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.47  E-value=2.8e-13  Score=104.71  Aligned_cols=70  Identities=29%  Similarity=0.536  Sum_probs=56.2

Q ss_pred             cEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEE-eeCCeEEEcCCccccCCeeEEEEeecCceeeEeeeeE
Q psy14896        211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQ  289 (813)
Q Consensus       211 ~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~  289 (813)
                      +++|.|.+.|.|.|.|+|+|+|..+.          ...++. ..+++|.|.+. +.+|+|.|+|.|.|..|.+ +.++.
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~----------~~~~~~~~~~~~l~i~~v-~~~D~G~Y~C~A~N~~G~~-~~~~~   68 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVI----------PSDYFKIVKEHNLQVLGL-VKSDEGFYQCIAENDVGNV-QASAQ   68 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECC----------CCCCEEEEecCCEEEEcC-CcccCEEEEEEEEcCCCEE-EEEEE
Confidence            38999999999999999999997652          222333 34678888875 8999999999999999987 56666


Q ss_pred             Eee
Q psy14896        290 LAF  292 (813)
Q Consensus       290 l~v  292 (813)
                      |.|
T Consensus        69 L~V   71 (71)
T cd05723          69 LII   71 (71)
T ss_pred             EEC
Confidence            654

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.46  E-value=2.3e-13  Score=106.91  Aligned_cols=79  Identities=22%  Similarity=0.393  Sum_probs=62.2

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccCCCC-eEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCe
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG  270 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p-~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G  270 (813)
                      |+..|.++.+.+|     +++.|.|++.|.|.| +|.|+|||.++..            ......+.|.|..   ..|+|
T Consensus         1 f~~~P~~~~v~~G-----~~v~l~C~a~G~P~P~~I~W~k~g~~l~~------------~~~~~~s~L~i~~---~~d~g   60 (81)
T cd05749           1 FTVEPEDLSVTAN-----TPFNLTCQAVGPPEPVEILWWQGGSPLGD------------PPAPSPSVLNVPG---LNETS   60 (81)
T ss_pred             CcCCCCceEEcCC-----CCEEEEEEeeeecCCeEEEEEECCEECCC------------CCCCCCCEEEEcc---ccCCe
Confidence            5667888888887     669999999999999 7999999987631            1122345677765   36899


Q ss_pred             eEEEEeecCceeeEeeeeEE
Q psy14896        271 SYHCKASNKFGSIISESVQL  290 (813)
Q Consensus       271 ~Y~C~a~n~~g~~~s~~~~l  290 (813)
                      .|.|.|+|..|...+..++|
T Consensus        61 ~Y~C~A~N~~G~~~s~~a~~   80 (81)
T cd05749          61 KFSCEAHNAKGVTTSRTGTV   80 (81)
T ss_pred             EEEEEEEeccCcEEeeeEEe
Confidence            99999999999887777665

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.46  E-value=4.1e-13  Score=110.12  Aligned_cols=72  Identities=26%  Similarity=0.453  Sum_probs=59.0

Q ss_pred             CCCCeEEEEEEecCCCCCeEEEEeCCcccCCC--ceeeecceEEEECCCC-CCCCEEEEEEEEcCCCceEE-EEEE
Q psy14896        685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRN--AYFENFNRILTIPNVK-VEDQGEYICRASNDRSALES-SVTI  756 (813)
Q Consensus       685 ~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~--~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~N~~G~~~~-~~~l  756 (813)
                      ..|++++|.|.+.|+|.|.|+|+|||.+|...  .++...++.|.|.++. .+|+|.|+|.|+|.+|...+ .+.|
T Consensus        17 ~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l   92 (94)
T cd05850          17 SPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVVSREANL   92 (94)
T ss_pred             CCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEE
Confidence            34679999999999999999999999998633  3454456789998865 69999999999999998654 5555

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.46  E-value=2.3e-13  Score=112.11  Aligned_cols=80  Identities=18%  Similarity=0.225  Sum_probs=60.8

Q ss_pred             ceeecCCCccccccEEEEeeecc-CCCCeEEEeecccccccccccccccCCCccEEe--------eCCeEEEcCCccccC
Q psy14896        198 DVVFDLSKRSILNDITLSCYAGG-YPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL--------SGGNLIINDPRQVED  268 (813)
Q Consensus       198 ~~~v~~g~~~~g~~v~l~C~~~g-~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~--------~~~~l~i~~~~~~~d  268 (813)
                      .+.+.+|     +++.|.|.+.| .|+|.+.|+|||.+|...         ......        ...+|.|.+. +.+|
T Consensus        12 ~~~v~~G-----~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~---------~~~~~~~~~~~~~~~~~~L~i~~v-~~~D   76 (101)
T cd04975          12 TIFVNLG-----ENLNLVVEVEAYPPPPHINWTYDNRTLTNK---------LTEIVTSENESEYRYVSELKLVRL-KESE   76 (101)
T ss_pred             eEEEECC-----CCEEEEEEEEecCCCCccEEEeCCeeCCCC---------cceeEEEeccCcceEEEEEEEeec-CHhh
Confidence            4556555     77999999999 899999999999877421         111111        1356777775 8999


Q ss_pred             CeeEEEEeecCceeeEeeeeEEeee
Q psy14896        269 RGSYHCKASNKFGSIISESVQLAFG  293 (813)
Q Consensus       269 ~G~Y~C~a~n~~g~~~s~~~~l~v~  293 (813)
                      +|.|+|.|+|..|.+ +..+.|.|.
T Consensus        77 ~G~Ytc~A~N~~G~~-~~t~~L~V~  100 (101)
T cd04975          77 AGTYTFLASNSDASK-SLTFELYVN  100 (101)
T ss_pred             CeeEEEEEECCCccE-EEEEEEEEE
Confidence            999999999999987 677777764

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.45  E-value=2.6e-13  Score=110.59  Aligned_cols=77  Identities=19%  Similarity=0.397  Sum_probs=65.7

Q ss_pred             cCCCCCCeEEEEEEecC-----CCCCeEEEEeCCcccCC----CceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEE
Q psy14896        682 EAPKAGDKVRLECVAFG-----YPVPSYNWTRRGSPLPR----NAYFENFNRILTIPNVKVEDQGEYICRASNDRSALES  752 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g-----~P~p~i~W~k~g~~l~~----~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~  752 (813)
                      ..+.+|+.+.|.|.+.|     .|.|.|+|||+|..+..    ..++...+..|.|.++..+|+|.|+|.|.|..|..+.
T Consensus         9 ~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~   88 (94)
T cd05756           9 SYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCMKV   88 (94)
T ss_pred             EEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccEEE
Confidence            45678999999999999     68899999999976532    2344444678999999999999999999999999999


Q ss_pred             EEEEEE
Q psy14896        753 SVTISI  758 (813)
Q Consensus       753 ~~~l~V  758 (813)
                      ++.|.|
T Consensus        89 ~~~L~v   94 (94)
T cd05756          89 SISLTV   94 (94)
T ss_pred             EEEEEC
Confidence            998876

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.45  E-value=3.3e-13  Score=110.03  Aligned_cols=72  Identities=26%  Similarity=0.486  Sum_probs=58.9

Q ss_pred             CCeEEEEEEecCCCCCeEEEEeC----CcccCCCce----ee---------ecceEEEECCCCCCCCEEEEEEEEcCCCc
Q psy14896        687 GDKVRLECVAFGYPVPSYNWTRR----GSPLPRNAY----FE---------NFNRILTIPNVKVEDQGEYICRASNDRSA  749 (813)
Q Consensus       687 G~~v~l~C~~~g~P~p~i~W~k~----g~~l~~~~~----~~---------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~  749 (813)
                      |++++|.|.+.|.|.|.|+|+|+    |..+..+..    ..         ...+.|.|.+++.+|+|.|+|.|.|.+|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            78999999999999999999994    444432211    00         11257999999999999999999999999


Q ss_pred             eEEEEEEEE
Q psy14896        750 LESSVTISI  758 (813)
Q Consensus       750 ~~~~~~l~V  758 (813)
                      ...++.|.|
T Consensus        81 ~~~~a~L~V   89 (90)
T cd05858          81 SHHSAWLTV   89 (90)
T ss_pred             ccceEEEEE
Confidence            999999988

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.45  E-value=5.5e-13  Score=108.16  Aligned_cols=85  Identities=24%  Similarity=0.379  Sum_probs=65.9

Q ss_pred             CceeeC--CCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe--eCCeEEEcCCcc
Q psy14896        190 PYFIKQ--PTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL--SGGNLIINDPRQ  265 (813)
Q Consensus       190 P~~~~~--p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~  265 (813)
                      |.|...  +.++.+.+|     ++++|.|.+.|. .|.|.|||++..+.           ..++.+  .+++|.|.+. +
T Consensus         2 p~~~~~~~~~~~~v~~g-----~~v~l~C~a~g~-~p~i~W~kng~~l~-----------~~~~~~~~~~~~L~I~~v-~   63 (91)
T cd05740           2 PVINSNNSVGNQPPEDN-----QPVTLTCEAEGQ-ATYIWWVNNGSLLV-----------PPRLQLSNDNRTLTFNNV-T   63 (91)
T ss_pred             CEeecccccCccccccC-----CcEEEEEEeCCC-CCEEEEEECCEECC-----------CCCEEEeCCCCEEEECcC-C
Confidence            445433  345666666     779999999999 99999999997652           112333  3467888885 8


Q ss_pred             ccCCeeEEEEeecCceeeEeeeeEEee
Q psy14896        266 VEDRGSYHCKASNKFGSIISESVQLAF  292 (813)
Q Consensus       266 ~~d~G~Y~C~a~n~~g~~~s~~~~l~v  292 (813)
                      .+|+|.|+|.|.|..|...+..+.|.|
T Consensus        64 ~~D~G~Y~C~a~N~~G~~~S~~~~L~V   90 (91)
T cd05740          64 RSDTGHYQCEASNEVSNMTSDPYILNV   90 (91)
T ss_pred             hhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence            999999999999999998888888886

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.45  E-value=3.2e-13  Score=110.04  Aligned_cols=72  Identities=29%  Similarity=0.505  Sum_probs=59.3

Q ss_pred             CCCeEEEEEEecCCCCCeEEEEeCCcccCC-CceeeecceEEEECCCC-CCCCEEEEEEEEcCCCceEE-EEEEE
Q psy14896        686 AGDKVRLECVAFGYPVPSYNWTRRGSPLPR-NAYFENFNRILTIPNVK-VEDQGEYICRASNDRSALES-SVTIS  757 (813)
Q Consensus       686 ~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~-~~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~N~~G~~~~-~~~l~  757 (813)
                      .|..+.|.|.+.|.|.|.|+|+|++.++.. ..++...++.|.|.++. .+|+|.|+|.|+|.+|...+ .+.|+
T Consensus        18 ~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~   92 (93)
T cd05849          18 TEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATLS   92 (93)
T ss_pred             cCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEEe
Confidence            356899999999999999999999998853 34555556789999985 68999999999999998644 56654

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.45  E-value=4.5e-13  Score=108.23  Aligned_cols=78  Identities=27%  Similarity=0.322  Sum_probs=61.1

Q ss_pred             cccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEee--------CCeEEEcCCccccCCeeEEEEeecCc
Q psy14896        209 LNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS--------GGNLIINDPRQVEDRGSYHCKASNKF  280 (813)
Q Consensus       209 g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~--------~~~l~i~~~~~~~d~G~Y~C~a~n~~  280 (813)
                      |+.++|.|.+.|.|.|.+.|+|++..+..        . ..++.+.        ..+|.|.+. ..+|+|.|+|.|+|..
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~--------~-~~r~~~~~~~~~~~~~s~L~I~~~-~~~D~G~YtC~A~N~~   70 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINP--------E-MSRYLVSTKEVGDEVISTLQILPT-VREDSGFFSCHAINSY   70 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCC--------C-CCcEEEEEecCCCcEEEEEEECCC-CcccCEEEEEEEEcCC
Confidence            68899999999999999999999976521        1 2233321        146788875 8999999999999999


Q ss_pred             eeeEeeeeEEeeeeecc
Q psy14896        281 GSIISESVQLAFGFIGE  297 (813)
Q Consensus       281 g~~~s~~~~l~v~~~~~  297 (813)
                      |.. +..+.|.|..+|.
T Consensus        71 G~~-~~~~~L~V~~~P~   86 (88)
T cd05735          71 GED-RGIIQLTVQEPPD   86 (88)
T ss_pred             Ccc-eEEEEEEEeCCCC
Confidence            987 6778888876553

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.44  E-value=5.7e-13  Score=104.95  Aligned_cols=71  Identities=28%  Similarity=0.515  Sum_probs=61.1

Q ss_pred             EEEEEEecCCCCCeEEEEeCCcccCCCc--ee--eecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEc
Q psy14896        690 VRLECVAFGYPVPSYNWTRRGSPLPRNA--YF--ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQA  760 (813)
Q Consensus       690 v~l~C~~~g~P~p~i~W~k~g~~l~~~~--~~--~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  760 (813)
                      +.|.|.+.|.|+|.|+|+|++..|..+.  ++  ......|.|.++..+|+|.|+|.|.|..|.++.++.|.|+.
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~   75 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVED   75 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEEc
Confidence            4799999999999999999999886543  22  22345799999999999999999999999999999999963

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.43  E-value=5.5e-13  Score=108.31  Aligned_cols=77  Identities=26%  Similarity=0.480  Sum_probs=63.8

Q ss_pred             cCCCCCCeEEEEEEe-cCCCCCeEEEEeCCcccCCC-ceee-ecceEEEECCCCCCCCEEEEEEEEcCCCce-EEEEEEE
Q psy14896        682 EAPKAGDKVRLECVA-FGYPVPSYNWTRRGSPLPRN-AYFE-NFNRILTIPNVKVEDQGEYICRASNDRSAL-ESSVTIS  757 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~-~g~P~p~i~W~k~g~~l~~~-~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~  757 (813)
                      ..+.+|+++.|.|.+ .|.|.|.|.|+|+|..+... .++. ...+.|.|.+++.+|+|.|+|.|.|..|.. +..+.|.
T Consensus         6 ~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~   85 (86)
T cd05724           6 TQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAARLS   85 (86)
T ss_pred             EEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeeeEEEE
Confidence            567899999999998 79999999999999988763 2222 225689999999999999999999999985 4566665


Q ss_pred             E
Q psy14896        758 I  758 (813)
Q Consensus       758 V  758 (813)
                      |
T Consensus        86 V   86 (86)
T cd05724          86 V   86 (86)
T ss_pred             C
Confidence            4

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.43  E-value=1.8e-12  Score=106.28  Aligned_cols=92  Identities=41%  Similarity=0.806  Sum_probs=71.0

Q ss_pred             cceEEeCCCceEecccccccccCeEEEEEeeccCCCcEEEeeccccccceeccccCCCCCceEEeeCCeEEEeCCCCCCC
Q psy14896        462 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED  541 (813)
Q Consensus       462 g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d  541 (813)
                      |+++...|.++.+...  ..|+.++|.|.+.|.|.|.|+|+|+|.++.        .....++...++.|.|.++...+|
T Consensus         1 ~P~f~~~p~~~~~~~~--~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~--------~~~~~~~~~~~g~L~i~~~~~~~D   70 (94)
T cd05848           1 GPVFVQEPDDAIFPTD--SDEKKVILNCEARGNPVPTYRWLRNGTEID--------TESDYRYSLIDGNLIISNPSEVKD   70 (94)
T ss_pred             CCeeEECCCcEEccCC--CCCCEEEEEEEeeecCCCEEEEEECCeECc--------cCCCceEEeeCCeEEEccCCccCc
Confidence            5667777777665321  357899999999999999999999996642        222345666778999988634699


Q ss_pred             CceEEEEEEcCceeEEeecEEE
Q psy14896        542 RGSYHCKASNKFGSIISESVQL  563 (813)
Q Consensus       542 ~G~Y~C~a~n~~g~~~s~~~~l  563 (813)
                      +|.|+|.|.|..|...+..+.|
T Consensus        71 ~G~Y~C~A~N~~G~~~S~~~~l   92 (94)
T cd05848          71 SGRYQCLATNSIGSILSREALL   92 (94)
T ss_pred             CEEEEEEEEcCCCeEEeccEEE
Confidence            9999999999999987765554

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.43  E-value=5.3e-13  Score=110.28  Aligned_cols=77  Identities=29%  Similarity=0.442  Sum_probs=62.6

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCc---eeeecceEEEECCC-----CCCCCEEEEEEEEcC-CCce-E
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA---YFENFNRILTIPNV-----KVEDQGEYICRASND-RSAL-E  751 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~---~~~~~~~~L~i~~v-----~~~d~G~Y~C~a~N~-~G~~-~  751 (813)
                      ..+.+|+++.|.|.+.|.|.|.|+|+|||..+....   .....++.|.|.++     ..+|+|.|+|.|.|. .|.. +
T Consensus         9 ~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s   88 (95)
T cd05722           9 IVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVS   88 (95)
T ss_pred             eEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCcEEE
Confidence            556789999999999999999999999999886543   22223456777776     689999999999999 9986 6


Q ss_pred             EEEEEEE
Q psy14896        752 SSVTISI  758 (813)
Q Consensus       752 ~~~~l~V  758 (813)
                      ..+.|+|
T Consensus        89 ~~~~l~v   95 (95)
T cd05722          89 RTARLTV   95 (95)
T ss_pred             eeeEEeC
Confidence            6788765

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.43  E-value=5.9e-13  Score=106.89  Aligned_cols=73  Identities=22%  Similarity=0.387  Sum_probs=56.9

Q ss_pred             cccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEee----CCeEEEcCCccccCCeeEEEEeecCceeeE
Q psy14896        209 LNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS----GGNLIINDPRQVEDRGSYHCKASNKFGSII  284 (813)
Q Consensus       209 g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~  284 (813)
                      |+.+.|.|.+.|.|.|.+.|+|++.++..         .+.++...    .++|.|.+. ..+|+|.|+|.|.|..|.. 
T Consensus        10 G~~v~l~c~~~G~P~P~v~W~k~~~~i~~---------~~~r~~~~~~~~~~~L~I~~~-~~~D~G~Y~c~a~N~~G~~-   78 (86)
T cd05894          10 GNKLRLDVPISGEPAPTVTWSRGDKAFTE---------TEGRVRVESYKDLSSFVIEGA-EREDEGVYTITVTNPVGED-   78 (86)
T ss_pred             CCEEEEEeeEeecCCCeEEEEECCEECcc---------CCCeEEEEEcCCeEEEEECCC-ccCcCEEEEEEEEeCCCcE-
Confidence            47799999999999999999999987632         12234432    245777775 8999999999999999987 


Q ss_pred             eeeeEEee
Q psy14896        285 SESVQLAF  292 (813)
Q Consensus       285 s~~~~l~v  292 (813)
                      +.++.|.|
T Consensus        79 ~~~~~l~V   86 (86)
T cd05894          79 HASLFVKV   86 (86)
T ss_pred             EEEEEEEC
Confidence            56666654

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.42  E-value=7.1e-13  Score=110.08  Aligned_cols=75  Identities=28%  Similarity=0.425  Sum_probs=62.7

Q ss_pred             cCCCCCCeEEEEEEecCCCCC-eEEEEeCCcccCCC--ceeee--------cceEEEECCCCCC-CCEEEEEEEEcCCCc
Q psy14896        682 EAPKAGDKVRLECVAFGYPVP-SYNWTRRGSPLPRN--AYFEN--------FNRILTIPNVKVE-DQGEYICRASNDRSA  749 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p-~i~W~k~g~~l~~~--~~~~~--------~~~~L~i~~v~~~-d~G~Y~C~a~N~~G~  749 (813)
                      ..+.+|+++.|.|.+.|.|.| .|+|++++..+...  .++..        ..++|+|.++..+ |.|.|+|.|.|..|.
T Consensus        11 ~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~   90 (98)
T cd05758          11 QYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGS   90 (98)
T ss_pred             EEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCc
Confidence            557899999999999999999 69999999988653  23321        1247999999995 589999999999999


Q ss_pred             eEEEEEE
Q psy14896        750 LESSVTI  756 (813)
Q Consensus       750 ~~~~~~l  756 (813)
                      +...+.|
T Consensus        91 ~~~~~~L   97 (98)
T cd05758          91 GTAIISL   97 (98)
T ss_pred             ccEEEEe
Confidence            9998876

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.42  E-value=5.3e-13  Score=112.34  Aligned_cols=78  Identities=24%  Similarity=0.491  Sum_probs=60.4

Q ss_pred             CcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCC-----c-eeeecce---EEEE--CCCCCCCCEEEEEEEEcCCCc
Q psy14896        681 PEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRN-----A-YFENFNR---ILTI--PNVKVEDQGEYICRASNDRSA  749 (813)
Q Consensus       681 ~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~-----~-~~~~~~~---~L~i--~~v~~~d~G~Y~C~a~N~~G~  749 (813)
                      ...+.+|+++.|.|.+.|.|.|.|+|+|+|..+...     . .....++   .+.|  ..++.+|+|.|+|.|.|.+|.
T Consensus        10 ~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~   89 (100)
T cd07693          10 DLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGE   89 (100)
T ss_pred             eeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEccccc
Confidence            367889999999999999999999999999988652     1 1111122   2223  234789999999999999999


Q ss_pred             -eEEEEEEEE
Q psy14896        750 -LESSVTISI  758 (813)
Q Consensus       750 -~~~~~~l~V  758 (813)
                       .++.+.|.|
T Consensus        90 ~~s~~~~l~v   99 (100)
T cd07693          90 AVSRNASLEV   99 (100)
T ss_pred             eecceEEEEe
Confidence             778888877

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.42  E-value=8.3e-13  Score=105.83  Aligned_cols=82  Identities=44%  Similarity=0.859  Sum_probs=67.6

Q ss_pred             CCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCccEEEcc-CccEEEeeeeecCCeeeEEEEeeeccccCCC
Q psy14896        302 RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSY-DGALYFSALEQIDAGNYSCNVQSKVSDTGRN  380 (813)
Q Consensus       302 ~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~-~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~  380 (813)
                      ..+..+.+|+++.|.|..+.|.|.+.+.|++++.++.+..+.|..+.. +|.|.|.+|+.+|+|.|+|.|+|..+..+..
T Consensus        10 ~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~~~~   89 (96)
T cd05727          10 RDEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSSTKSVF   89 (96)
T ss_pred             cCceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccCCccc
Confidence            456678899999999999999999999999999876544445555554 8999999999999999999999988766554


Q ss_pred             CCc
Q psy14896        381 GPF  383 (813)
Q Consensus       381 s~~  383 (813)
                      +..
T Consensus        90 ~~~   92 (96)
T cd05727          90 SKF   92 (96)
T ss_pred             CCc
Confidence            433

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.42  E-value=6.2e-13  Score=103.62  Aligned_cols=72  Identities=26%  Similarity=0.502  Sum_probs=57.9

Q ss_pred             cccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe-eCCeEEEcCCccccCCeeEEEEeecCceeeEeee
Q psy14896        209 LNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL-SGGNLIINDPRQVEDRGSYHCKASNKFGSIISES  287 (813)
Q Consensus       209 g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~  287 (813)
                      |+++.|.|.+.|.|.|.+.|+|++..+.          .+.++.. .+++|.|.+. +.+|+|.|+|.|.|..|.. +.+
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~----------~~~~~~~~~~~~L~i~~v-~~~D~G~Y~C~a~N~~G~~-~~~   68 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLT----------NSSRICIWPDGSLEILNV-TKSDEGKYTCFAENFFGKA-NST   68 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcc----------cCCCEEECCCCeEEEccC-ChhHCEEEEEEEECCCCce-EEE
Confidence            5789999999999999999999998652          2233333 4678888885 8999999999999999987 556


Q ss_pred             eEEee
Q psy14896        288 VQLAF  292 (813)
Q Consensus       288 ~~l~v  292 (813)
                      +.|.|
T Consensus        69 ~~l~V   73 (73)
T cd04969          69 GSLSV   73 (73)
T ss_pred             EEEEC
Confidence            66654

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.42  E-value=7.6e-13  Score=108.68  Aligned_cols=86  Identities=34%  Similarity=0.662  Sum_probs=69.2

Q ss_pred             CceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe--e--CCeEEEcCCcc
Q psy14896        190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL--S--GGNLIINDPRQ  265 (813)
Q Consensus       190 P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~--~--~~~l~i~~~~~  265 (813)
                      |+|...|.++.+.+|     +++.|.|.+.|.|.|.+.|+++|..+..          +.++.+  .  ..+|.|.+. +
T Consensus         1 P~~~~~~~~~~v~~G-----~~~~l~c~~~~~p~~~v~W~~~~~~l~~----------~~~~~~~~~~~~~~L~I~~v-~   64 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEG-----ESVTLECEVSGNPPPTVTWYKNGRPLTS----------SQRYQIESDGGSSSLTIKNV-T   64 (90)
T ss_dssp             EEEEEESSEEEEETT-----SEEEEEEEEEESSSSEEEEEETTEEEES----------SSSEEEEEETTEEEEEESSE-S
T ss_pred             CEEEEecCCEEEeCC-----CEEEEEEEEEeCCCCcccccccccceee----------eeeeeeecccceeEEccCCC-C
Confidence            678999999999888     6699999999999999999999987742          223332  2  345777775 8


Q ss_pred             ccCCeeEEEEeecCceeeEeeeeEEee
Q psy14896        266 VEDRGSYHCKASNKFGSIISESVQLAF  292 (813)
Q Consensus       266 ~~d~G~Y~C~a~n~~g~~~s~~~~l~v  292 (813)
                      .+|+|.|+|.|.|..|.. +..+.|.|
T Consensus        65 ~~D~G~Y~C~~~n~~g~~-~~~~~l~V   90 (90)
T PF07679_consen   65 REDAGTYTCVASNSSGEA-TASVNLTV   90 (90)
T ss_dssp             GGGSEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             hhhCEEEEEEEEECCCEE-EEEEEEEC
Confidence            999999999999999987 56666654

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.42  E-value=6e-13  Score=102.52  Aligned_cols=69  Identities=26%  Similarity=0.513  Sum_probs=55.4

Q ss_pred             EEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeeeeEEe
Q psy14896        212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLA  291 (813)
Q Consensus       212 v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~  291 (813)
                      ++|.|.+.|.|.|.+.|||||.++.          .+.++...+++|.|.+. +.+|+|.|+|.|.|..|.. +..+.+.
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~----------~~~~~~~~~~~L~I~~v-~~~D~G~YtC~a~N~~g~~-~~~~~~~   68 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLIS----------EKNRTKKSGHSLTIKDV-TEEDAGNYTVVLTNKQAKL-EKRLTFT   68 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECC----------CCCEEEcCCCEEEECcC-CHHHCEEEEEEEEcCCccE-EEEEEEE
Confidence            4799999999999999999998762          22455566778888886 8999999999999999875 4445554


Q ss_pred             e
Q psy14896        292 F  292 (813)
Q Consensus       292 v  292 (813)
                      +
T Consensus        69 ~   69 (71)
T cd04976          69 L   69 (71)
T ss_pred             E
Confidence            4

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.42  E-value=6.2e-13  Score=104.76  Aligned_cols=67  Identities=28%  Similarity=0.488  Sum_probs=56.6

Q ss_pred             EEEEEEecC-CCCCeEEEEeCCcccCCCceee-------ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEE
Q psy14896        690 VRLECVAFG-YPVPSYNWTRRGSPLPRNAYFE-------NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI  756 (813)
Q Consensus       690 v~l~C~~~g-~P~p~i~W~k~g~~l~~~~~~~-------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l  756 (813)
                      +.|.|.+.| .|.|.++|+|+|.++..+.+..       .....|.|.+++.+|+|.|+|.|.|.+|.++.++.+
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~~   75 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTANV   75 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEeC
Confidence            479999999 9999999999999987654321       234689999999999999999999999998887753

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.41  E-value=7e-13  Score=103.39  Aligned_cols=72  Identities=33%  Similarity=0.599  Sum_probs=58.2

Q ss_pred             EEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe-eCCeEEEcCCccccCCeeEEEEeecCceeeEeeeeEE
Q psy14896        212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL-SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL  290 (813)
Q Consensus       212 v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l  290 (813)
                      ++|.|.+.|.|.|.|.|||++..+..        ..+.++.. .+++|.|.+. +.+|+|.|+|.|.|..|...+..+.|
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~--------~~~~~~~~~~~g~L~i~~~-~~~D~G~Y~C~a~N~~G~~~s~~a~l   71 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDT--------TSNGRIKQLRSGALQIENS-EESDQGKYECVATNSAGTRYSAPANL   71 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECcc--------CCCCCEEEcCCcEEEECCC-ChhhCEEEEEEEECCCCceEcccEEE
Confidence            47999999999999999999976521        22334443 4677888775 89999999999999999988888888


Q ss_pred             ee
Q psy14896        291 AF  292 (813)
Q Consensus       291 ~v  292 (813)
                      .|
T Consensus        72 ~v   73 (74)
T cd05738          72 YV   73 (74)
T ss_pred             EE
Confidence            76

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.41  E-value=1.4e-12  Score=108.24  Aligned_cols=91  Identities=27%  Similarity=0.448  Sum_probs=65.6

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeec--ccccccccccccccCCCccEEee----CCeEEEcC
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKE--DYVQDRLVANLIDPLSDKRFTLS----GGNLIIND  262 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~--g~~l~~~~~~~~~~~~~~~~~~~----~~~l~i~~  262 (813)
                      +|.|.. |.+..+.+|     ++++|.|.+.|.|.|.|.|||+  |..+..     .+...+.++...    .++|.|.+
T Consensus         2 ~p~i~~-~~~~~~~~G-----~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~-----~~~~~~~r~~v~~~~~~~~L~I~~   70 (98)
T cd05870           2 QPHIIQ-LKNETTVEN-----GAATLSCKAEGEPIPEITWKRASDGHTFSE-----GDKSPDGRIEVKGQHGESSLHIKD   70 (98)
T ss_pred             CCEEEe-eccEEEcCC-----CcEEEEEecccCCCCeEEEEECCCCceecc-----CCcCcCceEEEeecCCeeEEEEee
Confidence            466654 778888777     6799999999999999999995  333211     011223345543    24688877


Q ss_pred             CccccCCeeEEEEeecCceeeEeeeeEEee
Q psy14896        263 PRQVEDRGSYHCKASNKFGSIISESVQLAF  292 (813)
Q Consensus       263 ~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v  292 (813)
                      . +.+|+|.|+|.|.|..|.. +.++.|.|
T Consensus        71 v-~~~D~G~Y~C~A~N~~G~~-~~~~~l~~   98 (98)
T cd05870          71 V-KLSDSGRYDCEAASRIGGH-QKSMYLDI   98 (98)
T ss_pred             C-CcCCCEEEEEEEeccCCcc-eeEEEEeC
Confidence            5 8999999999999999987 56676654

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.41  E-value=7.1e-13  Score=109.55  Aligned_cols=82  Identities=18%  Similarity=0.217  Sum_probs=57.6

Q ss_pred             ccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeeeeE
Q psy14896        210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQ  289 (813)
Q Consensus       210 ~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~  289 (813)
                      +.+.|.|.+.|.|.|.|.|||||.+|.....................+|.|.+. +.+|+|.|+|.|+|..|.+ +.++.
T Consensus        19 ~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v-~~~D~G~Ytc~A~N~~g~~-~~t~~   96 (101)
T cd05859          19 EVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRA-KEEDSGLYTALAQNEDAVK-SYTFA   96 (101)
T ss_pred             CcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeC-CHHHCEEEEEEEEcCCceE-EEEEE
Confidence            669999999999999999999999874321110000000000011356888885 8999999999999999987 66677


Q ss_pred             Eeee
Q psy14896        290 LAFG  293 (813)
Q Consensus       290 l~v~  293 (813)
                      |.|.
T Consensus        97 l~V~  100 (101)
T cd05859          97 LQIQ  100 (101)
T ss_pred             EEEE
Confidence            7663

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.41  E-value=1.5e-12  Score=109.81  Aligned_cols=96  Identities=24%  Similarity=0.300  Sum_probs=66.1

Q ss_pred             CCceeeCCCceee-cCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe--------eCCeEE
Q psy14896        189 GPYFIKQPTDVVF-DLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL--------SGGNLI  259 (813)
Q Consensus       189 ~P~~~~~p~~~~v-~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~--------~~~~l~  259 (813)
                      +|.|...|....+ ..|  ..|++++|.|.+.|.|.|.+.|+|||..|..         .+.++..        ..++|.
T Consensus         4 ~P~~~~~~~~~~~~~~~--~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~---------~~~r~~~~~~~~~~~~~s~L~   72 (109)
T cd05773           4 APDLQKGPQLRKVASRG--DGSSDANLVCQAQGVPRVQFRWAKNGVPLDL---------GNPRYEETTEHTGTVHTSILT   72 (109)
T ss_pred             ccccccCCceEEEEEec--CCCCEEEEEEECcccCCCEEEEEECCEECCC---------CCCeEEEEeeccCccceeEEE
Confidence            4555544443222 222  2357899999999999999999999987631         1223321        134677


Q ss_pred             EcCCccccCCeeEEEEeecCceeeEeeeeEEeeeeec
Q psy14896        260 INDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIG  296 (813)
Q Consensus       260 i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~  296 (813)
                      |.+....+|.|.|+|.|.|..|.. +..+.|.|...|
T Consensus        73 I~~v~~~~D~G~Y~C~A~N~~G~~-~~~i~L~~~~~p  108 (109)
T cd05773          73 IINVSAALDYALFTCTAHNSLGED-SLDIQLVSTSRP  108 (109)
T ss_pred             ECcCCccCCCEEEEEEEEeCCccC-cEEEEEEecCCC
Confidence            777523689999999999999997 677888876554

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.40  E-value=1.1e-12  Score=100.11  Aligned_cols=68  Identities=22%  Similarity=0.439  Sum_probs=51.9

Q ss_pred             cccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeeee
Q psy14896        209 LNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESV  288 (813)
Q Consensus       209 g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~  288 (813)
                      |++++|.|.+.|.|.|.|+|+|+|+++.          ...++......|.|.+.   .|+|.|+|.|.|..|.. ..++
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~----------~~~~~~~~~~~L~i~~~---~d~G~Y~C~A~N~~G~~-~~~a   66 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELT----------KEDEMPVGRNVLELTNI---YESANYTCVAISSLGMI-EATA   66 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECC----------CccceecCccEEEEecc---ccCeeEEEEEEeCCCEE-EEEE
Confidence            5779999999999999999999998652          22233334456777663   58999999999999986 4445


Q ss_pred             EE
Q psy14896        289 QL  290 (813)
Q Consensus       289 ~l  290 (813)
                      .|
T Consensus        67 ~l   68 (69)
T cd05739          67 QV   68 (69)
T ss_pred             EE
Confidence            44

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.40  E-value=1.2e-12  Score=104.93  Aligned_cols=72  Identities=26%  Similarity=0.467  Sum_probs=58.5

Q ss_pred             CCeEEEEEEecCCCCCeEEEEeCCc---cc--CCCc----eeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEE
Q psy14896        687 GDKVRLECVAFGYPVPSYNWTRRGS---PL--PRNA----YFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS  757 (813)
Q Consensus       687 G~~v~l~C~~~g~P~p~i~W~k~g~---~l--~~~~----~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~  757 (813)
                      |++++|.|.+.|.|.|.|+|+|++.   .+  ....    ........|+|.+++.+|+|.|+|.|.|.+|.....+.|+
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   80 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS   80 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence            7899999999999999999999742   11  1111    1112346899999999999999999999999999999997


Q ss_pred             E
Q psy14896        758 I  758 (813)
Q Consensus       758 V  758 (813)
                      |
T Consensus        81 v   81 (81)
T cd05765          81 V   81 (81)
T ss_pred             C
Confidence            6

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.40  E-value=8.9e-13  Score=101.84  Aligned_cols=70  Identities=24%  Similarity=0.425  Sum_probs=55.3

Q ss_pred             EEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeeeeEEe
Q psy14896        212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLA  291 (813)
Q Consensus       212 v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~  291 (813)
                      ++|.|.+.|.|.|.|.|+|++..+..         ........+++|.|.+. +.+|+|.|+|.|.|..|.+ +.++.|.
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~---------~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~N~~G~~-~~~~~l~   69 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSP---------NRTKKLNNNKTLQLDNV-LESDDGEYVCTAENSEGSA-RHHYTVT   69 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCC---------CceeEEcCCCEEEEccc-CHHhCEEEEEEEEcCCCeE-EEEEEEE
Confidence            47999999999999999999976521         11223345678888885 8999999999999999987 5667766


Q ss_pred             e
Q psy14896        292 F  292 (813)
Q Consensus       292 v  292 (813)
                      |
T Consensus        70 V   70 (71)
T cd05876          70 V   70 (71)
T ss_pred             E
Confidence            5

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.40  E-value=2e-12  Score=107.09  Aligned_cols=92  Identities=28%  Similarity=0.398  Sum_probs=66.3

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEee----CCeEEEcCCc
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS----GGNLIINDPR  264 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~  264 (813)
                      .|.|...+....+..|     ++++|.|.+.|.|.|.|+|+|++..+....     .....++...    .++|.|.+. 
T Consensus         2 ~p~i~~~~~~~~~~~g-----~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~L~I~~v-   70 (97)
T cd05869           2 KPKITYVENQTAMELE-----EQITLTCEASGDPIPSITWRTSTRNISSEE-----KTLDGHIVVRSHARVSSLTLKYI-   70 (97)
T ss_pred             CceEEEccCceEEEcC-----CCEEEEEEeeEeCCCEEEEEECCccccCCc-----cccCccEEEEcCccEEEEEEecC-
Confidence            3677777666665445     779999999999999999999987653211     0112233332    246778775 


Q ss_pred             cccCCeeEEEEeecCceeeEeeeeEEee
Q psy14896        265 QVEDRGSYHCKASNKFGSIISESVQLAF  292 (813)
Q Consensus       265 ~~~d~G~Y~C~a~n~~g~~~s~~~~l~v  292 (813)
                      +.+|+|.|+|.|+|..|.. +.++.|.|
T Consensus        71 ~~~D~G~Y~C~A~N~~G~~-~~~~~l~v   97 (97)
T cd05869          71 QYTDAGEYLCTASNTIGQD-SQSMYLEV   97 (97)
T ss_pred             ccCcCEEEEEEEecCCCCe-eEEEEEEC
Confidence            8999999999999999987 66666654

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.40  E-value=1.3e-12  Score=103.23  Aligned_cols=75  Identities=29%  Similarity=0.499  Sum_probs=59.1

Q ss_pred             cccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeeee
Q psy14896        209 LNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESV  288 (813)
Q Consensus       209 g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~  288 (813)
                      |++++|.|.+.|.|.|.|.|+++|..+....       ...+....++.|.|.+. +.+|+|.|+|.|.|..|.. +..+
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~-------~~~~~~~~~~~L~i~~v-~~~D~G~Y~C~A~N~~G~~-~~~~   71 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELP-------PDPRRRVDGGTLILSNV-QPNDTAVYQCNASNVHGYL-LANA   71 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCC-------CcceEEccCCEEEECCC-ChhhCEEEEEEEEccCCeE-EEeE
Confidence            5789999999999999999999998763211       11234445677888775 8999999999999999987 5667


Q ss_pred             EEee
Q psy14896        289 QLAF  292 (813)
Q Consensus       289 ~l~v  292 (813)
                      .|.|
T Consensus        72 ~l~V   75 (76)
T cd04978          72 FVHV   75 (76)
T ss_pred             EEEE
Confidence            7765

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.39  E-value=1.7e-12  Score=106.31  Aligned_cols=81  Identities=25%  Similarity=0.430  Sum_probs=59.6

Q ss_pred             CCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeC---CeEEEcCCccccCCeeE
Q psy14896        196 PTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSG---GNLIINDPRQVEDRGSY  272 (813)
Q Consensus       196 p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~~d~G~Y  272 (813)
                      |..+.+.+|     +++.|.|.+.|.|.|+|.|||+|.++..        ....+....+   .+|.|.+. +.+|+|.|
T Consensus         8 p~~v~v~~G-----~~v~L~C~v~G~P~p~v~W~k~g~~l~~--------~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y   73 (92)
T cd05737           8 PDVVTIMEG-----KTLNLTCTVFGDPDPEVSWLKNDQALAL--------SDHYNVKVEQGKYASLTIKGV-SSEDSGKY   73 (92)
T ss_pred             CceEEEeCC-----CcEEEEEEEEecCCCeEEEEECCEECcc--------CCCEEEEEcCCCEEEEEEccC-ChhhCEEE
Confidence            455677666     6799999999999999999999987632        1111222221   25777775 89999999


Q ss_pred             EEEeecCceeeEeeeeEEe
Q psy14896        273 HCKASNKFGSIISESVQLA  291 (813)
Q Consensus       273 ~C~a~n~~g~~~s~~~~l~  291 (813)
                      +|.|.|..|.. +..+.|.
T Consensus        74 ~C~a~N~~G~~-~~~~~v~   91 (92)
T cd05737          74 GIVVKNKYGGE-TVDVTVS   91 (92)
T ss_pred             EEEEEECCCcc-eEEEEEe
Confidence            99999999976 4455554

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.39  E-value=1.5e-12  Score=101.53  Aligned_cols=70  Identities=29%  Similarity=0.512  Sum_probs=53.8

Q ss_pred             EEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe-eC--C--eEEEcCCccccCCeeEEEEeecCceeeEee
Q psy14896        212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL-SG--G--NLIINDPRQVEDRGSYHCKASNKFGSIISE  286 (813)
Q Consensus       212 v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~-~~--~--~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~  286 (813)
                      ++|.|.+.|.|.|.|.|+|+|..+..         ...++.+ .+  +  +|.|.+. +.+|+|.|+|.|.|..|.+ +.
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~---------~~~r~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a~N~~G~~-~~   69 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTY---------NTDRISLYQDNCGRICLLIQNA-NKEDAGWYTVSAVNEAGVV-SC   69 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCC---------CCCcEEEEEcCCCeEEEEECCC-CcccCEEEEEEEEcCCCcE-EE
Confidence            57999999999999999999987621         1223332 12  2  5788775 8999999999999999987 56


Q ss_pred             eeEEee
Q psy14896        287 SVQLAF  292 (813)
Q Consensus       287 ~~~l~v  292 (813)
                      .+.|.|
T Consensus        70 ~~~l~v   75 (75)
T cd05744          70 NARLDV   75 (75)
T ss_pred             EEEEeC
Confidence            676654

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.39  E-value=1.5e-12  Score=104.37  Aligned_cols=77  Identities=45%  Similarity=0.906  Sum_probs=64.3

Q ss_pred             CCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEe-eCccEEEEeecccCCeeEEEEEEeeecCcc
Q psy14896        575 RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVS-YDGALYFSALEQIDAGNYSCNVQSKVSDTG  651 (813)
Q Consensus       575 ~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  651 (813)
                      ..+..+.+|+.+.|.|..+.|.|.+.|.|+|++.+..+..+.+..+. .+|.|.|.+++.+|+|+|+|.|+|.++..+
T Consensus        10 ~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~~   87 (96)
T cd05727          10 RDEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSSTKS   87 (96)
T ss_pred             cCceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccCCc
Confidence            34566888999999999999999999999999987544444544455 489999999999999999999999986553

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.39  E-value=3.1e-12  Score=105.84  Aligned_cols=88  Identities=25%  Similarity=0.542  Sum_probs=64.4

Q ss_pred             CceeeCC--CceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEee--CCeEEEcCCcc
Q psy14896        190 PYFIKQP--TDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS--GGNLIINDPRQ  265 (813)
Q Consensus       190 P~~~~~p--~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~  265 (813)
                      |.|...+  .+..+..|     +++.|.|.+.|.|.|.|.|+|+|..+..         ...++...  ...|.|.+. +
T Consensus         2 p~i~~~~~~~~~~~~~G-----~~v~L~C~~~g~P~p~v~W~k~g~~~~~---------~~~~~~~~~~~~~L~I~~v-~   66 (95)
T cd05730           2 PTIRARQSEVNATANLG-----QSVTLACDADGFPEPTMTWTKDGEPIES---------GEEKYSFNEDGSEMTILDV-D   66 (95)
T ss_pred             CccccCCcccceEEeCC-----CCEEEEEeccEeCCCEEEEEECCEECcC---------CCCEEEEeCCCCEEEECCC-C
Confidence            4444433  34455555     7799999999999999999999986531         12334332  345777775 8


Q ss_pred             ccCCeeEEEEeecCceeeEeeeeEEeee
Q psy14896        266 VEDRGSYHCKASNKFGSIISESVQLAFG  293 (813)
Q Consensus       266 ~~d~G~Y~C~a~n~~g~~~s~~~~l~v~  293 (813)
                      .+|+|.|+|.|.|..|.. ...+.|.|.
T Consensus        67 ~~D~G~Y~C~a~N~~G~~-~~~~~L~V~   93 (95)
T cd05730          67 KLDEAEYTCIAENKAGEQ-EAEIHLKVF   93 (95)
T ss_pred             hhhCEEEEEEEEcCCCeE-EEEEEEEEE
Confidence            999999999999999987 667777764

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.39  E-value=2.6e-12  Score=101.60  Aligned_cols=77  Identities=21%  Similarity=0.321  Sum_probs=58.6

Q ss_pred             CceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEe
Q psy14896        197 TDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKA  276 (813)
Q Consensus       197 ~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a  276 (813)
                      .+..+.+|     +.+.|+|.+.|. .+.|.|+|||.+|.          .+.++.+.+++|.|.+. +.+|+|.|+|.|
T Consensus         2 ~~~~~~~G-----~~v~l~C~~~~~-~~~v~W~k~g~~l~----------~~~~~~~~~~~L~I~~~-~~~DsG~Y~C~a   64 (79)
T cd04973           2 ESYSAHPG-----DLLQLRCRLRDD-VQSINWTKDGVQLG----------ENNRTRITGEEVQIKDA-VPRDSGLYACVT   64 (79)
T ss_pred             CcEEecCC-----CCEEEEEEecCC-CceEEEeeCCcCCC----------CCceEEEeCCEEEECCC-ChhhCEEEEEEE
Confidence            44555555     779999999985 57899999998762          23455666778888886 899999999999


Q ss_pred             ecCceeeEeeeeEEe
Q psy14896        277 SNKFGSIISESVQLA  291 (813)
Q Consensus       277 ~n~~g~~~s~~~~l~  291 (813)
                      .|..|.. ...+.|+
T Consensus        65 ~n~~g~~-~~~~~v~   78 (79)
T cd04973          65 SSPSGSD-TTYFSVN   78 (79)
T ss_pred             eCCCCcc-cEEEEEe
Confidence            9999875 4444444

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.39  E-value=2e-12  Score=104.00  Aligned_cols=73  Identities=27%  Similarity=0.521  Sum_probs=60.8

Q ss_pred             CCeEEEEEEecCC--CCCeEEEEeCCcccCCCce---------eeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEE
Q psy14896        687 GDKVRLECVAFGY--PVPSYNWTRRGSPLPRNAY---------FENFNRILTIPNVKVEDQGEYICRASNDRSALESSVT  755 (813)
Q Consensus       687 G~~v~l~C~~~g~--P~p~i~W~k~g~~l~~~~~---------~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~  755 (813)
                      |++++|.|.+.|.  |.|.|+|++++..+.....         .....+.|+|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~   80 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK   80 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence            7899999999999  8899999998876543211         1123468999999999999999999999999999999


Q ss_pred             EEEE
Q psy14896        756 ISIQ  759 (813)
Q Consensus       756 l~V~  759 (813)
                      |.|.
T Consensus        81 v~v~   84 (84)
T cd05742          81 VNIH   84 (84)
T ss_pred             EEEC
Confidence            8773

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.39  E-value=3.3e-12  Score=104.43  Aligned_cols=82  Identities=20%  Similarity=0.422  Sum_probs=59.9

Q ss_pred             CCCceeecCCCccccccEEEEeeeccCCC-CeEEEee-cccccccccccccccCCCccEEee-----CCeEEEcCCcccc
Q psy14896        195 QPTDVVFDLSKRSILNDITLSCYAGGYPN-PSYEWFK-EDYVQDRLVANLIDPLSDKRFTLS-----GGNLIINDPRQVE  267 (813)
Q Consensus       195 ~p~~~~v~~g~~~~g~~v~l~C~~~g~P~-p~v~W~k-~g~~l~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~~  267 (813)
                      .|.+..+..|     ++++|.|.+.|.|. |.|+|+| ||..+.         ..+.++...     .++|.|.+. +.+
T Consensus         6 ~p~~~~v~~G-----~~v~l~C~v~G~P~~p~i~W~~~~g~~l~---------~~~~r~~v~~~~~~~~~L~I~~v-~~~   70 (96)
T cd05865           6 VPSQGEISVG-----ESKFFLCQVAGEAKDKDISWFSPNGEKLT---------PNQQRISVVRNDDYSSTLTIYNA-NID   70 (96)
T ss_pred             eCCccEECCC-----CeEEEEEEEeCCCCCCEEEEECCCCcCcc---------ccCCeEEEEeCCCCceEEEEecc-Chh
Confidence            4566666666     77999999999995 7999998 675442         112233321     257888885 899


Q ss_pred             CCeeEEEEeecCc-eeeEeeeeEEee
Q psy14896        268 DRGSYHCKASNKF-GSIISESVQLAF  292 (813)
Q Consensus       268 d~G~Y~C~a~n~~-g~~~s~~~~l~v  292 (813)
                      |+|.|+|.|+|.. |.+ +.++.|.|
T Consensus        71 D~G~YtC~A~N~~~g~~-~~s~~l~v   95 (96)
T cd05865          71 DAGIYKCVVSNEDEGES-EATVNVKI   95 (96)
T ss_pred             hCEEEEEEEEcCCCCcE-EEEEEEEE
Confidence            9999999999997 655 66677665

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.39  E-value=1.7e-12  Score=102.34  Aligned_cols=78  Identities=21%  Similarity=0.348  Sum_probs=61.5

Q ss_pred             ccEEEEeeecc--CCCCeEEEeecccccccccccccccCCCccEEe-----eCCeEEEcCCccccCCeeEEEEeecCcee
Q psy14896        210 NDITLSCYAGG--YPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL-----SGGNLIINDPRQVEDRGSYHCKASNKFGS  282 (813)
Q Consensus       210 ~~v~l~C~~~g--~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~  282 (813)
                      ++++|.|.+.+  .+.+.|.|+|||++|..      + ..+.++..     .++.|+|.+. +..|+|.|+|.|+|..+.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~------~-~~~~~~~~~~~~~~~~~L~I~nv-~~~dsG~YtC~a~n~~~~   72 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDF------Q-KDGDHFERVGGQDSAGDLMIRSI-QLKHAGKYVCMVQTSVDK   72 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcc------c-CCCccEEEeccCCCCCcEEEecC-CHHHCEEEEEEEEcccCc
Confidence            45999999976  45789999999987731      1 23334544     3568999986 999999999999999998


Q ss_pred             eEeeeeEEeeeeec
Q psy14896        283 IISESVQLAFGFIG  296 (813)
Q Consensus       283 ~~s~~~~l~v~~~~  296 (813)
                      . +.++.|.|..+|
T Consensus        73 ~-~a~a~L~V~~pP   85 (85)
T cd05853          73 L-SAAADLIVRGPP   85 (85)
T ss_pred             e-EEEEEEEEecCC
Confidence            8 788999987665

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.38  E-value=1.4e-12  Score=99.23  Aligned_cols=70  Identities=23%  Similarity=0.335  Sum_probs=52.3

Q ss_pred             EEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCce-eeEeeeeEE
Q psy14896        212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFG-SIISESVQL  290 (813)
Q Consensus       212 v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g-~~~s~~~~l  290 (813)
                      ++|.|.+.|.|.|++.|+|||.++.         ....++...+++|.|.+. +.+|+|.|+|.|+|... ......++|
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~---------~~~~~~~~~~~~L~I~~v-~~~D~G~YtC~a~~~~~~~~~~~~i~~   70 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAA---------EKCSRYHVDGYSLVIKDV-TEEDAGIYTILLGIKQYNLFKNLTITL   70 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECC---------CCCcEEEeCCCEEEECcC-CHHHCEEEEEEEEccccceEeeEEEEE
Confidence            4799999999999999999998762         122345555668888885 89999999999999743 333334444


Q ss_pred             e
Q psy14896        291 A  291 (813)
Q Consensus       291 ~  291 (813)
                      .
T Consensus        71 ~   71 (72)
T cd07702          71 I   71 (72)
T ss_pred             E
Confidence            3

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.38  E-value=1.3e-12  Score=99.44  Aligned_cols=67  Identities=21%  Similarity=0.406  Sum_probs=51.0

Q ss_pred             EEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeeeeEEe
Q psy14896        212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLA  291 (813)
Q Consensus       212 v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~  291 (813)
                      +.|.|.+.|.|.|.++|||||++|..          ..++ ..+++|.|.+. ..+|+|.|+|.|.|..|.. +...+++
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~----------~~~~-~~~~~L~I~~v-~~~D~G~YtC~a~N~~G~~-~~~~t~~   67 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVL----------NHTF-KRGVHLTIYEV-TEKDAGNYTVVLTNPITKE-EQRHTFQ   67 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCC----------CCEE-ccCCEEEECcC-CHHHCEEEEEEEEECCCce-eeEEEEE
Confidence            46999999999999999999987632          1122 23457888775 8999999999999999966 3334333

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.38  E-value=2.3e-12  Score=103.20  Aligned_cols=78  Identities=26%  Similarity=0.455  Sum_probs=59.5

Q ss_pred             ccEEEEeeeccCCCC--eEEEeecccccccccccccccCCCccE---Ee--eCCeEEEcCCccccCCeeEEEEeecCcee
Q psy14896        210 NDITLSCYAGGYPNP--SYEWFKEDYVQDRLVANLIDPLSDKRF---TL--SGGNLIINDPRQVEDRGSYHCKASNKFGS  282 (813)
Q Consensus       210 ~~v~l~C~~~g~P~p--~v~W~k~g~~l~~~~~~~~~~~~~~~~---~~--~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~  282 (813)
                      +.++|.|.+.|.|.|  .|.|+|||..|...       ..+.++   ..  ..++|.|.+. +.+|+|.|+|.|.|..|.
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~-------~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~YtC~A~n~~g~   72 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLD-------KPNGHYRRMEVKETIGDLVIVNA-QLSHAGTYTCTAQTVVDS   72 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEcccc-------CCCCcEEEEEecceEeEEEEccC-ChhhCeEEEEEEecCCCC
Confidence            359999999999987  68999999876321       112222   11  2468888886 899999999999999998


Q ss_pred             eEeeeeEEeeeeec
Q psy14896        283 IISESVQLAFGFIG  296 (813)
Q Consensus       283 ~~s~~~~l~v~~~~  296 (813)
                      . +.++.|.|..+|
T Consensus        73 ~-~~~~~L~V~~~P   85 (85)
T cd05854          73 A-SASATLVVRGPP   85 (85)
T ss_pred             E-EEEEEEEEECCC
Confidence            8 778888887644

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.38  E-value=1.7e-12  Score=101.66  Aligned_cols=70  Identities=31%  Similarity=0.582  Sum_probs=52.9

Q ss_pred             EEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe--eCCeEEEcCCccc----cCCeeEEEEeecCceeeEe
Q psy14896        212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL--SGGNLIINDPRQV----EDRGSYHCKASNKFGSIIS  285 (813)
Q Consensus       212 v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~----~d~G~Y~C~a~n~~g~~~s  285 (813)
                      +.|.|++.|+|.|+|+|+|||.++.        .....++.+  .+++|.|... ..    .|+|.|+|.|+|..|.+.+
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~--------~~~~~~~~~~~~~g~l~i~~~-~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFD--------IDKDPKVTMKPNTGTLVINIM-NGEKAEAYEGVYQCTARNERGAAVS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECC--------CcCCCCEEEeCCCceEEEecc-ccCCCCCCCEEEEEEEEcCCCeEEe
Confidence            5799999999999999999998652        122233333  4677777643 32    4899999999999999888


Q ss_pred             eeeEE
Q psy14896        286 ESVQL  290 (813)
Q Consensus       286 ~~~~l  290 (813)
                      ..+.|
T Consensus        72 ~~~~~   76 (77)
T cd05874          72 NNIVI   76 (77)
T ss_pred             eEEEE
Confidence            77765

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.38  E-value=2.8e-12  Score=104.69  Aligned_cols=84  Identities=24%  Similarity=0.373  Sum_probs=61.4

Q ss_pred             eCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEE--eeCCeEEEcCCccccCCee
Q psy14896        194 KQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFT--LSGGNLIINDPRQVEDRGS  271 (813)
Q Consensus       194 ~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~~d~G~  271 (813)
                      ..|.+..+.+|     +++.|.|.+.|+|.|.|.|+|+|..+...        ......  ...++|.|.+. +.+|.|.
T Consensus         5 ~~p~~~~v~~G-----~~v~l~C~~~G~P~p~v~W~~~g~~~~~~--------~~~~~~~~~~~~~L~I~~v-~~~D~g~   70 (90)
T cd04972           5 DGPNATVVYEG-----GTATIRCTAEGSPLPKVEWIIAGLIVIQT--------RTDTLETTVDIYNLQLSNI-TSETQTT   70 (90)
T ss_pred             cCCcCEEEcCC-----CcEEEEEEEEEcCCCeEEEEECCEEccCC--------ccEEEEecCCEEEEEEecC-CcccCEE
Confidence            34566666666     77999999999999999999999865211        110111  12346777775 8999999


Q ss_pred             EEEEeecCceeeEeeeeEEee
Q psy14896        272 YHCKASNKFGSIISESVQLAF  292 (813)
Q Consensus       272 Y~C~a~n~~g~~~s~~~~l~v  292 (813)
                      |+|.|.|..|.. +..+.|.|
T Consensus        71 Y~C~A~N~~G~~-~~~~~L~v   90 (90)
T cd04972          71 VTCTAENPVGQA-NVSVQVTV   90 (90)
T ss_pred             EEEEEECCCCce-eEEEEEeC
Confidence            999999999987 56666653

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.38  E-value=2.7e-12  Score=104.27  Aligned_cols=83  Identities=28%  Similarity=0.559  Sum_probs=65.1

Q ss_pred             CCCceeecCCCccccccEEEEeee-ccCCCCeEEEeecccccccccccccccCCCccEE-eeCCeEEEcCCccccCCeeE
Q psy14896        195 QPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFT-LSGGNLIINDPRQVEDRGSY  272 (813)
Q Consensus       195 ~p~~~~v~~g~~~~g~~v~l~C~~-~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~~d~G~Y  272 (813)
                      +|.+..+.+|     +++.|.|.+ .|.|.|.+.|+|+|..+..        . ..++. ..+++|.|.+. +.+|+|.|
T Consensus         2 ~p~~~~~~~G-----~~v~l~C~~~~g~p~p~i~W~k~g~~~~~--------~-~~~~~~~~~~~L~I~~~-~~~D~G~Y   66 (86)
T cd05724           2 EPSDTQVAVG-----EMAVLECSPPRGHPEPTVSWRKDGQPLNL--------D-NERVRIVDDGNLLIAEA-RKSDEGTY   66 (86)
T ss_pred             CCccEEEeCC-----CCEEEEEECCCCCCCCEEEEEECCEECCC--------C-CCCEEEccCCEEEEeEC-CcccCEEE
Confidence            3566777666     779999998 7999999999999986531        1 22333 34678888885 89999999


Q ss_pred             EEEeecCceeeEeeeeEEee
Q psy14896        273 HCKASNKFGSIISESVQLAF  292 (813)
Q Consensus       273 ~C~a~n~~g~~~s~~~~l~v  292 (813)
                      +|.|.|..|...+..+.|.|
T Consensus        67 ~C~a~N~~G~~~s~~~~l~V   86 (86)
T cd05724          67 KCVATNMVGERESAAARLSV   86 (86)
T ss_pred             EEEEEeccCceeeeeEEEEC
Confidence            99999999998777777764

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.38  E-value=2e-12  Score=101.26  Aligned_cols=72  Identities=28%  Similarity=0.618  Sum_probs=54.7

Q ss_pred             EEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe--eCCeEEEcCCc--c-ccCCeeEEEEeecCceeeEee
Q psy14896        212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL--SGGNLIINDPR--Q-VEDRGSYHCKASNKFGSIISE  286 (813)
Q Consensus       212 v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~--~-~~d~G~Y~C~a~n~~g~~~s~  286 (813)
                      +.|.|++.|+|.|.|+|+|+|..+.        ...+.++.+  .+++|.|....  . .+|+|.|+|.|+|..|.+.+.
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~--------~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFN--------VAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN   72 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEcc--------CcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence            4799999999999999999997542        123334443  47788887531  2 357999999999999999888


Q ss_pred             eeEEe
Q psy14896        287 SVQLA  291 (813)
Q Consensus       287 ~~~l~  291 (813)
                      .+.|+
T Consensus        73 ~~~~~   77 (77)
T cd05875          73 KILLQ   77 (77)
T ss_pred             EEEEC
Confidence            77763

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.37  E-value=3.5e-12  Score=103.12  Aligned_cols=82  Identities=26%  Similarity=0.499  Sum_probs=62.4

Q ss_pred             eCCCceeecCCCccccccEEEEeeeccCCCCeEEEeec-ccccccccccccccCCCccEEee-CC---eEEEcCCccccC
Q psy14896        194 KQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKE-DYVQDRLVANLIDPLSDKRFTLS-GG---NLIINDPRQVED  268 (813)
Q Consensus       194 ~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~-g~~l~~~~~~~~~~~~~~~~~~~-~~---~l~i~~~~~~~d  268 (813)
                      ..|.+..+.+|     +++.|.|.+.|.|. .+.|||+ |..+          ..+.++.+. ++   +|.|.+. +.+|
T Consensus         5 ~~~~~~~v~~G-----~~v~l~C~~~G~P~-~v~W~k~~g~~~----------~~~~r~~~~~~g~~~~L~I~~v-~~~D   67 (92)
T cd05866           5 ISLSKVELSVG-----ESKFFTCTAIGEPE-SIDWYNPQGEKI----------VSSQRVVVQKEGVRSRLTIYNA-NIED   67 (92)
T ss_pred             EEecceEEcCC-----CeEEEEEEEEEeCC-eEEEEeCCCeEe----------cCCCCEEEEeCCCeeEEEEecC-ChHH
Confidence            44667777777     67999999999998 9999985 5443          223344443 44   6888885 8999


Q ss_pred             CeeEEEEeecCceeeEeeeeEEee
Q psy14896        269 RGSYHCKASNKFGSIISESVQLAF  292 (813)
Q Consensus       269 ~G~Y~C~a~n~~g~~~s~~~~l~v  292 (813)
                      +|.|+|.|+|..|.....++.|.+
T Consensus        68 ~G~Y~C~A~N~~G~~~~~~i~l~~   91 (92)
T cd05866          68 AGIYRCQATDAKGQTQEATVVLEI   91 (92)
T ss_pred             CEEEEEEEEcCCCcEEEEEEEEEE
Confidence            999999999999987666777664

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.37  E-value=2e-12  Score=101.69  Aligned_cols=66  Identities=30%  Similarity=0.565  Sum_probs=52.7

Q ss_pred             EEEEEEecCCCCCeEEEEeCCcccCCCc--ee--eecceEEEECCCCC----CCCEEEEEEEEcCCCceEE-EEE
Q psy14896        690 VRLECVAFGYPVPSYNWTRRGSPLPRNA--YF--ENFNRILTIPNVKV----EDQGEYICRASNDRSALES-SVT  755 (813)
Q Consensus       690 v~l~C~~~g~P~p~i~W~k~g~~l~~~~--~~--~~~~~~L~i~~v~~----~d~G~Y~C~a~N~~G~~~~-~~~  755 (813)
                      ++|.|.+.|.|.|.|+|+|||.++....  ++  ....+.|.|.++..    +|+|.|+|+|.|.+|...+ .+.
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~   75 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIH   75 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccccE
Confidence            4799999999999999999999885432  22  23467899998854    7999999999999998654 444

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.37  E-value=1.6e-12  Score=102.19  Aligned_cols=71  Identities=34%  Similarity=0.691  Sum_probs=54.7

Q ss_pred             EEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe--eCCeEEEcCCc---cccCCeeEEEEeecCceeeEee
Q psy14896        212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL--SGGNLIINDPR---QVEDRGSYHCKASNKFGSIISE  286 (813)
Q Consensus       212 v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~---~~~d~G~Y~C~a~n~~g~~~s~  286 (813)
                      ++|.|.+.|+|.|+|+|+|||..+..        ..+.++..  .+++|.|....   ..+|+|.|+|.|+|..|.+.+.
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~--------~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDP--------EKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISN   72 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCC--------CCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEcc
Confidence            57999999999999999999986531        22333433  36888887641   2379999999999999998887


Q ss_pred             eeEE
Q psy14896        287 SVQL  290 (813)
Q Consensus       287 ~~~l  290 (813)
                      .+.|
T Consensus        73 ~~~l   76 (77)
T cd05733          73 EIHL   76 (77)
T ss_pred             ccEE
Confidence            7765

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.37  E-value=2.4e-12  Score=99.08  Aligned_cols=69  Identities=33%  Similarity=0.555  Sum_probs=53.7

Q ss_pred             EEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeeeeEEe
Q psy14896        212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLA  291 (813)
Q Consensus       212 v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~  291 (813)
                      ++|.|.+.|.|.|.+.|+|++..+.          .+......+++|.|.+. +.+|+|.|+|.|.|..|.. +..+.|.
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~----------~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~N~~G~~-~~~~~l~   68 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELP----------KGRAEILDDKSLKIRNV-TAGDEGSYTCEAENMVGKI-EASASLT   68 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCC----------CCcEEEeeCCEEEECcC-ChhHCEEEEEEEEcCCCcE-EEEEEEE
Confidence            5799999999999999999986541          12222235677888885 8999999999999999987 5566665


Q ss_pred             e
Q psy14896        292 F  292 (813)
Q Consensus       292 v  292 (813)
                      |
T Consensus        69 V   69 (69)
T cd05725          69 V   69 (69)
T ss_pred             C
Confidence            4

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.37  E-value=2.9e-12  Score=100.36  Aligned_cols=67  Identities=33%  Similarity=0.576  Sum_probs=52.0

Q ss_pred             EEEEEEecCCCCCeEEEEeCCcccCCC--cee--eecceEEEECCCCCC----CCEEEEEEEEcCCCceEE-EEEE
Q psy14896        690 VRLECVAFGYPVPSYNWTRRGSPLPRN--AYF--ENFNRILTIPNVKVE----DQGEYICRASNDRSALES-SVTI  756 (813)
Q Consensus       690 v~l~C~~~g~P~p~i~W~k~g~~l~~~--~~~--~~~~~~L~i~~v~~~----d~G~Y~C~a~N~~G~~~~-~~~l  756 (813)
                      +.|.|.+.|.|.|+|+|+|||.++...  .++  ...+++|.|..+..+    |.|.|+|.|.|.+|...+ .+.|
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~   76 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI   76 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence            479999999999999999999987422  222  334678889887643    789999999999998655 4443

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.36  E-value=2.4e-12  Score=102.18  Aligned_cols=69  Identities=33%  Similarity=0.523  Sum_probs=54.3

Q ss_pred             EEEEEEecCCCCCeEEEEeCCcccC--------CCceee-ecceEEEECCCCCCCCEEEEEEEEcCCCce-EEEEEEEE
Q psy14896        690 VRLECVAFGYPVPSYNWTRRGSPLP--------RNAYFE-NFNRILTIPNVKVEDQGEYICRASNDRSAL-ESSVTISI  758 (813)
Q Consensus       690 v~l~C~~~g~P~p~i~W~k~g~~l~--------~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V  758 (813)
                      |+|.|.+.|.|.|.|+|+|++....        .+.++. ..+++|.|.++..+|+|.|+|.|.|..|.+ +..+.|.|
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~   79 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV   79 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence            5799999999999999999754211        122222 235789999999999999999999999986 66777764

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.36  E-value=1.8e-12  Score=99.62  Aligned_cols=67  Identities=34%  Similarity=0.640  Sum_probs=53.7

Q ss_pred             EEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe-eCCeEEEcCCccccCCeeEEEEeecCceeeEeeeeEE
Q psy14896        212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL-SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL  290 (813)
Q Consensus       212 v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l  290 (813)
                      |.|.|.+.|.|.|.|+|+|+|..+.          ...++.+ .+++|.|.+. +.+|+|.|+|.|.|..|.+ +.++.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~----------~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a~N~~G~~-~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVT----------ESGKFHISPEGYLAIRDV-GVADQGRYECVARNTIGYA-SVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECC----------CCCCEEECCCCEEEECcC-ChhhCEEEEEEEECCCCcE-EEEEEe
Confidence            5799999999999999999997652          2334444 3678888885 8999999999999999987 555544

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>PF00059 Lectin_C: Lectin C-type domain; InterPro: IPR001304 Lectins occur in plants, animals, bacteria and viruses

Probab=99.36  E-value=2.8e-12  Score=109.11  Aligned_cols=102  Identities=23%  Similarity=0.317  Sum_probs=80.6

Q ss_pred             cCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcCCCCCCcc--ccccCCCCCCc
Q psy14896         48 LKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDGTNLNEL--DAAFLPEPADN  125 (813)
Q Consensus        48 ~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~dgs~~~~~--~~~~~~~p~~~  125 (813)
                      +++|.+|++.|+.+||+|+.|++.+|++||..++.   ....+|||+ +....+.|.|.||+.....  ...|   +...
T Consensus         2 ~~~~~~A~~~C~~~~~~L~~i~~~~e~~~i~~~~~---~~~~~Wig~-~~~~~~~~~w~~~~~~~~~~~~~~w---~~~~   74 (105)
T PF00059_consen    2 PMTWEEAQQYCQSMGAHLASINSEEENDFIQSQLK---SNESYWIGL-DSDNNGTWKWIDGSPNSPENFYTNW---NPPN   74 (105)
T ss_dssp             EEEHHHHHHHHHHTTSEEB-GSSHHHHHHHHHHHH---SSSEEEEEE-ESSSTSEEEETTSSBSSSTTBSGCB---SSGG
T ss_pred             CCCHHHHHHHHhcCCCEEeEeCCHHHhhhhhhccc---ccceeeeee-eccccceeccccCCCcccccccccc---ccCC
Confidence            37999999999999999999999999999999986   456899999 6667789999999988752  1123   3333


Q ss_pred             ccCCeEEEEeeccccccceeeccCCCceeeeeee
Q psy14896        126 VQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEA  159 (813)
Q Consensus       126 ~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~  159 (813)
                      ....|+.| .  ......|.+..|.....|+|++
T Consensus        75 ~~~~C~~~-~--~~~~~~w~~~~C~~~~~fiCek  105 (105)
T PF00059_consen   75 DSENCAYI-Y--YSSSGKWNDVPCSEKYPFICEK  105 (105)
T ss_dssp             SSEEEEEE-G--CSTTTEEEEEETTSEEEEEEEE
T ss_pred             CCCCeEEE-E--EcCCCeEEeeCCCCCeeEEeeC
Confidence            46899998 2  2224566699999999999985

Initially described for their carbohydrate-binding activity [], they are now recognised as a more diverse group of proteins, some of which are involved in protein-protein, protein-lipid or protein-nucleic acid interactions []. There are at least twelve structural families of lectins: C-type lectins, which are Ca+-dependent. S-type (galectins), a widespread family of glycan-binding proteins []. I-type, which have an immunoglobulin-like fold and can recognise sialic acids, other sugars and glycosaminoglycans []. P-type, which bind phosphomannosyl receptors []. Pentraxins []. (Trout) egg lectins. Calreticulin and calnexin, which act as molecular chaperones of the endoplasmic reticulum []. ERGIC-53 and VIP-36 []. Discoidins []. Eel aggutinins (fucolectins) []. Annexin lectins []. Fibrinogen-type lectins, which includes ficolins, tachylectins 5A and 5B, and Limax flavus (Spotted garden slug) agglutinin (these proteins have clear distinctions from one another, but they share a homologous fibrinogen-like domain used for carbohydrate binding). Also unclassified orphan lectins, including amphoterin, Cel-II, complement factor H, thrombospondin, sailic acid-binding lectins, adherence lectin, and cytokins (such as tumour necrosis factor and several interleukins). C-type lectins can be further divided into seven subgroups based on additional non-lectin domains and gene structure: (I) hyalectans, (II) asialoglycoprotein receptors, (III) collectins, (IV) selectins, (V) NK group transmembrane receptors, (VI) macrophage mannose receptors, and (VII) simple (single domain) lectins []. Therefore, lectins are a diverse group of proteins, both in terms of structure and activity. Carbohydrate binding ability may have evolved independently and sporadically in numerous unrelated families, where each evolved a structure that was conserved to fulfil some other activity and function. In general, animal lectins act as recognition molecules within the immune system, their functions involving defence against pathogens, cell trafficking, immune regulation and the prevention of autoimmunity [].; GO: 0005488 binding; PDB: 1T8D_A 2H2T_B 1T8C_A 2H2R_A 1TN3_A 1RJH_A 1HTN_A 3G8K_B 2E3X_B 1UMR_D ....

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.35  E-value=3.3e-12  Score=104.24  Aligned_cols=76  Identities=26%  Similarity=0.485  Sum_probs=60.3

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEe-CCcccCCCceee-----ecceEEEECCCCCCCCEEEEEEEEcCCC-ceEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTR-RGSPLPRNAYFE-----NFNRILTIPNVKVEDQGEYICRASNDRS-ALESSV  754 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k-~g~~l~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G-~~~~~~  754 (813)
                      ..+..|+++.|.|.+.|.|+ .++|++ +|..+....++.     ...++|+|.+++.+|+|.|+|.|.|..| ..++++
T Consensus        10 ~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv   88 (92)
T cd04977          10 GEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATV   88 (92)
T ss_pred             EEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEE
Confidence            56789999999999999974 999998 666665433221     1235899999999999999999999975 467777


Q ss_pred             EEEE
Q psy14896        755 TISI  758 (813)
Q Consensus       755 ~l~V  758 (813)
                      .|.|
T Consensus        89 ~l~~   92 (92)
T cd04977          89 NLKI   92 (92)
T ss_pred             EEEC
Confidence            7764

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.35  E-value=4.2e-12  Score=99.81  Aligned_cols=71  Identities=30%  Similarity=0.672  Sum_probs=53.9

Q ss_pred             EEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe--eCCeEEEcCCccccCCeeEEEEeecCceeeE-eeee
Q psy14896        212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL--SGGNLIINDPRQVEDRGSYHCKASNKFGSII-SESV  288 (813)
Q Consensus       212 v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~-s~~~  288 (813)
                      |+|.|.+.|.|.|.|+|||+|.++..         ...++..  .+++|.|.+. +.+|+|.|+|.|.|..|... +..+
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~---------~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a~N~~G~~~s~~~~   70 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSD---------GQGNYSVSSKERTLTLRSA-GPDDSGLYYCCAHNAFGSVCSSQNF   70 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCC---------CCccEEEeCCCCEEEEeeC-CcccCEEEEEEEEeCCCeEeeCceE
Confidence            57999999999999999999986621         1223333  2457888875 89999999999999999874 2355


Q ss_pred             EEee
Q psy14896        289 QLAF  292 (813)
Q Consensus       289 ~l~v  292 (813)
                      +|.|
T Consensus        71 ~l~v   74 (77)
T cd05760          71 TLSI   74 (77)
T ss_pred             EEEE
Confidence            5554

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.35  E-value=3.2e-12  Score=103.40  Aligned_cols=78  Identities=24%  Similarity=0.500  Sum_probs=56.8

Q ss_pred             ccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeee
Q psy14896        208 ILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISES  287 (813)
Q Consensus       208 ~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~  287 (813)
                      +|+.+.|.|.+.|.|.|.+.|||+|.++.....     ....+......+|.|.+. +.+|+|.|+|.|.|..|.+ ..+
T Consensus         8 ~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~-----~~~~~~~~~~~~l~i~~~-~~~D~G~Y~C~a~N~~G~~-~~~   80 (85)
T cd05857           8 AANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHR-----IGGYKVRNQHWSLIMESV-VPSDKGNYTCVVENEYGSI-NHT   80 (85)
T ss_pred             CCCEEEEEEEcCCCCCCEEEEEECCEECCCCCc-----eeeeEEeCCceEEEEccC-CcccCEEEEEEEEeCCCEE-EEE
Confidence            347799999999999999999999987632110     000111122456777775 8999999999999999987 566


Q ss_pred             eEEee
Q psy14896        288 VQLAF  292 (813)
Q Consensus       288 ~~l~v  292 (813)
                      ++|.|
T Consensus        81 ~~l~v   85 (85)
T cd05857          81 YHLDV   85 (85)
T ss_pred             EEEEC
Confidence            76654

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.34  E-value=6.5e-12  Score=104.34  Aligned_cols=91  Identities=27%  Similarity=0.386  Sum_probs=65.3

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEee----CCeEEEcCCc
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS----GGNLIINDPR  264 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~  264 (813)
                      +|.|. .+.+..+.+|     ++++|.|.+.|.|.|.|.|+|++..+....     .....++...    .++|.|.+. 
T Consensus         2 ~P~i~-~~~~~~~~~g-----~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~L~I~~v-   69 (96)
T cd05732           2 QPKIT-YLENQTAVEL-----EQITLTCEAEGDPIPEITWRRATRNFSEGD-----KSLDGRIVVRGHARVSSLTLKDV-   69 (96)
T ss_pred             Cccce-ecCceeEecC-----CcEEEEEEEeEcCCCcEEEEECCcccCCCC-----ccccceEEEeCCccEEEEEECcC-
Confidence            46664 4566777666     679999999999999999999986542211     0112233322    246777775 


Q ss_pred             cccCCeeEEEEeecCceeeEeeeeEEee
Q psy14896        265 QVEDRGSYHCKASNKFGSIISESVQLAF  292 (813)
Q Consensus       265 ~~~d~G~Y~C~a~n~~g~~~s~~~~l~v  292 (813)
                      +.+|+|.|+|.|+|..|.. +.++.|.|
T Consensus        70 ~~~D~G~Y~C~a~N~~G~~-~~s~~l~v   96 (96)
T cd05732          70 QLTDAGRYDCEASNRIGGD-QQSMYLEV   96 (96)
T ss_pred             CcCcCEEeEEEEEeCCCCc-EEEEEEeC
Confidence            8999999999999999987 66666654

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.34  E-value=5.1e-12  Score=98.90  Aligned_cols=69  Identities=22%  Similarity=0.422  Sum_probs=53.9

Q ss_pred             EEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEee----CCeEEEcCCccccCCeeEEEEeecCceeeEeee
Q psy14896        212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS----GGNLIINDPRQVEDRGSYHCKASNKFGSIISES  287 (813)
Q Consensus       212 v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~  287 (813)
                      +.|.|.+.|.|.|.+.|+|+|..+.          .+.++.+.    .++|.|.+. +.+|+|.|+|.|.|..|.+ +.+
T Consensus         2 ~~l~c~~~G~P~p~v~W~k~g~~l~----------~~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a~N~~G~~-~~~   69 (74)
T cd05748           2 VRLEVPISGRPTPTVTWSKDGKPLK----------LSGRVQIETTASSTSLVIKNA-ERSDSGKYTLTLKNPAGEK-SAT   69 (74)
T ss_pred             EEEEeeEeeeCCCeEEEEECCEEcC----------CCCeEEEEECCCeEEEEECCC-CcCcCEEEEEEEECCCccE-EEE
Confidence            7899999999999999999998762          22233322    345777775 8999999999999999987 666


Q ss_pred             eEEee
Q psy14896        288 VQLAF  292 (813)
Q Consensus       288 ~~l~v  292 (813)
                      +.|.|
T Consensus        70 ~~l~V   74 (74)
T cd05748          70 INVKV   74 (74)
T ss_pred             EEEEC
Confidence            66654

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.34  E-value=3.8e-12  Score=103.74  Aligned_cols=76  Identities=20%  Similarity=0.265  Sum_probs=57.9

Q ss_pred             cccEEEEeeecc-----CCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceee
Q psy14896        209 LNDITLSCYAGG-----YPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI  283 (813)
Q Consensus       209 g~~v~l~C~~~g-----~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~  283 (813)
                      |+.+.|.|.+.|     .|.|.|.|||+|..+..      ......++...+++|.|.+. +.+|+|.|+|.|+|..|..
T Consensus        14 G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~------~~~~~~r~~~~~~~L~I~~~-~~~DsG~Y~C~~~N~~g~~   86 (94)
T cd05756          14 GEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPI------PTEERSRMHQQKDLLWFLPA-ALEDSGLYTCVVRNSTYCM   86 (94)
T ss_pred             CCCeEEECCCCCcccccCCCceEEEEEcCCCCcc------cccccceeeecCCeEEEccC-CcccCeEEEEEEcCCCccE
Confidence            377999999998     79999999999975421      11233455555778888875 8999999999999999976


Q ss_pred             EeeeeEEee
Q psy14896        284 ISESVQLAF  292 (813)
Q Consensus       284 ~s~~~~l~v  292 (813)
                       +..+.|.|
T Consensus        87 -~~~~~L~v   94 (94)
T cd05756          87 -KVSISLTV   94 (94)
T ss_pred             -EEEEEEEC
Confidence             44566553

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.33  E-value=4.6e-12  Score=99.24  Aligned_cols=63  Identities=32%  Similarity=0.551  Sum_probs=49.9

Q ss_pred             EEEEEEecCCCCCeEEEEeCCcccC--CCceee--ecceEEEECCCC----CCCCEEEEEEEEcCCCceEE
Q psy14896        690 VRLECVAFGYPVPSYNWTRRGSPLP--RNAYFE--NFNRILTIPNVK----VEDQGEYICRASNDRSALES  752 (813)
Q Consensus       690 v~l~C~~~g~P~p~i~W~k~g~~l~--~~~~~~--~~~~~L~i~~v~----~~d~G~Y~C~a~N~~G~~~~  752 (813)
                      +.|.|.+.|+|.|.|+|+|+|.++.  .+.++.  ..+++|.|..+.    .+|+|.|+|.|.|.+|...+
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALS   71 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence            4799999999999999999998763  233332  346789998864    24799999999999997654

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.33  E-value=5.4e-12  Score=99.00  Aligned_cols=72  Identities=32%  Similarity=0.570  Sum_probs=54.3

Q ss_pred             EEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe--eCCeEEEcCCccccCCeeEEEEeecCceeeEeeeeE
Q psy14896        212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL--SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQ  289 (813)
Q Consensus       212 v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~  289 (813)
                      ++|.|.+.|.|.|.|+|+|+|.....       .....++..  .++.|.|.+. +.+|+|.|+|.|.|..|.. +..+.
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~-------~~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~A~N~~G~~-~~~~~   71 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFP-------AARERRMHVMPEDDVFFIVDV-KIEDTGVYSCTAQNTAGSI-SANAT   71 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCC-------cccccceEEecCCCEEEEeeC-CcccCEEEEEEEEcCCCEE-EeeEE
Confidence            47999999999999999999864211       122233333  3456777675 8999999999999999987 66777


Q ss_pred             Eee
Q psy14896        290 LAF  292 (813)
Q Consensus       290 l~v  292 (813)
                      |.|
T Consensus        72 l~V   74 (75)
T cd05763          72 LTV   74 (75)
T ss_pred             EEE
Confidence            776

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.33  E-value=3.9e-12  Score=98.62  Aligned_cols=75  Identities=21%  Similarity=0.325  Sum_probs=50.4

Q ss_pred             EEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeeeeEEe
Q psy14896        214 LSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLA  291 (813)
Q Consensus       214 l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~  291 (813)
                      |.|.+.|+|.|+|+|||||++|........... ........++|.|.++ ..+|+|.|+|+|+|..|++ +.++.+.
T Consensus         3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~-~~~~~~~~~~L~i~~~-~~~D~G~YtC~A~N~~G~~-~~~~~~~   77 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIH-VINNTEYHGCLQLDNP-THLNNGIYTLVAKNEYGED-EKNVSAH   77 (79)
T ss_pred             EEEEEeEeCCCceEEEECCEECCCCcceeeeeE-eecccceEEEEEECCC-CcccCEEEEEEEEcCCccc-ceEEEee
Confidence            789999999999999999998743210000000 0000012346777775 7999999999999999976 4445443

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.33  E-value=6.4e-12  Score=98.38  Aligned_cols=73  Identities=32%  Similarity=0.512  Sum_probs=55.8

Q ss_pred             cccEEEEeeeccCCCCeEEEeec-ccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeee
Q psy14896        209 LNDITLSCYAGGYPNPSYEWFKE-DYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISES  287 (813)
Q Consensus       209 g~~v~l~C~~~g~P~p~v~W~k~-g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~  287 (813)
                      |+++.|.|.+.|.|.|.+.|+++ +..+.         .........+++|.|... +.+|.|.|+|.|.|..|.+ +..
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~---------~~~~~~~~~~~~L~i~~~-~~~D~G~Y~C~a~N~~G~~-~~~   69 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLIS---------NSSRTLVYDNGTLDILIT-TVKDTGSFTCIASNAAGEA-TAT   69 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEec---------CCCeEEEecCCEEEEEEC-ChhhCEEEEEEEECCCCeE-EEE
Confidence            57899999999999999999985 44321         112222345788888875 8999999999999999987 666


Q ss_pred             eEEee
Q psy14896        288 VQLAF  292 (813)
Q Consensus       288 ~~l~v  292 (813)
                      +.|.|
T Consensus        70 ~~l~v   74 (74)
T cd05764          70 VELHI   74 (74)
T ss_pred             EEEEC
Confidence            66654

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.32  E-value=4.3e-12  Score=102.59  Aligned_cols=78  Identities=21%  Similarity=0.294  Sum_probs=64.4

Q ss_pred             cCCCCCCeEEEEEEecC-----CCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFG-----YPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI  756 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g-----~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l  756 (813)
                      +.+.+|+++.|.|...+     +|.|.++||||+.++....+....++.|.|.++..+|+|.|+|.|.|.+|.....++.
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t~   84 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNVTR   84 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCCCEEEEEEE
Confidence            56788999999998753     3578999999999998665443367899999999999999999999999987766655


Q ss_pred             EEE
Q psy14896        757 SIQ  759 (813)
Q Consensus       757 ~V~  759 (813)
                      ++.
T Consensus        85 t~~   87 (92)
T cd05757          85 TIS   87 (92)
T ss_pred             EEE
Confidence            553

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.32  E-value=6.3e-12  Score=98.92  Aligned_cols=67  Identities=21%  Similarity=0.473  Sum_probs=54.2

Q ss_pred             EEEEEEecC-CCCCeEEEEeCCcccCCCc----eee----ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEE
Q psy14896        690 VRLECVAFG-YPVPSYNWTRRGSPLPRNA----YFE----NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI  756 (813)
Q Consensus       690 v~l~C~~~g-~P~p~i~W~k~g~~l~~~~----~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l  756 (813)
                      +.|.|.+.+ .|.|.++|||+|++|....    ++.    ...+.|.|.++..+|+|.|+|.|+|..|.++.++.+
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~~   76 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTANV   76 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEeC
Confidence            479999875 6888999999999886432    111    234679999999999999999999999998887753

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.31  E-value=1.7e-11  Score=98.04  Aligned_cols=73  Identities=26%  Similarity=0.563  Sum_probs=58.8

Q ss_pred             CCeEEEEEEecCCCCCeEEEEeCCcccCCCc----e----eeecceEEEECCCCCCCCEEEEEEEEcCCC--ceEEEEEE
Q psy14896        687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA----Y----FENFNRILTIPNVKVEDQGEYICRASNDRS--ALESSVTI  756 (813)
Q Consensus       687 G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~----~----~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G--~~~~~~~l  756 (813)
                      |++++|.|.+.|.|.|.++|+++++......    .    .....++|+|.+++.+|+|.|+|.|+|..+  ..+.++.|
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i   80 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI   80 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence            7899999999999999999999876432211    1    112256899999999999999999999877  67888888


Q ss_pred             EEE
Q psy14896        757 SIQ  759 (813)
Q Consensus       757 ~V~  759 (813)
                      +|.
T Consensus        81 ~V~   83 (84)
T cd05861          81 TVH   83 (84)
T ss_pred             EEe
Confidence            885

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.31  E-value=9.5e-12  Score=100.30  Aligned_cols=78  Identities=27%  Similarity=0.404  Sum_probs=59.6

Q ss_pred             ccEEEEeeeccCCCC--eEEEeecccccccccccccccCCCccE-----EeeCCeEEEcCCccccCCeeEEEEeecCcee
Q psy14896        210 NDITLSCYAGGYPNP--SYEWFKEDYVQDRLVANLIDPLSDKRF-----TLSGGNLIINDPRQVEDRGSYHCKASNKFGS  282 (813)
Q Consensus       210 ~~v~l~C~~~g~P~p--~v~W~k~g~~l~~~~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~  282 (813)
                      ++++|.|.+.|.|.|  .+.|+|||..|...       ..+.++     ...+++|.|.+. +.+|+|.|+|.|.|..|.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~-------~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~n~~g~   72 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFD-------KDGGHYRRVGGKDSNGDLMIRNA-QLKHAGKYTCTAQTVVDS   72 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeecc-------CCCccEEEEecccccceEEEccC-CHHhCeeeEEEEecCCCc
Confidence            459999999999988  67999999876321       111111     123678999886 899999999999999998


Q ss_pred             eEeeeeEEeeeeec
Q psy14896        283 IISESVQLAFGFIG  296 (813)
Q Consensus       283 ~~s~~~~l~v~~~~  296 (813)
                      . +.++.|.|..+|
T Consensus        73 ~-~~~~~l~V~~pP   85 (85)
T cd04970          73 L-SASADLIVRGPP   85 (85)
T ss_pred             E-EEEEEEEEECCC
Confidence            7 778888887654

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.31  E-value=9.5e-12  Score=100.38  Aligned_cols=73  Identities=38%  Similarity=0.638  Sum_probs=62.6

Q ss_pred             cCCCCCCeEEEEEEecC-CCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFG-YPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI  756 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g-~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l  756 (813)
                      ..+.+|++++|.|.+.+ .|.|.|.|++++..+....  ...++.|.|.+++.+|+|.|.|.|.|..|..++++.|
T Consensus        11 ~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l   84 (85)
T cd05754          11 QEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA--MDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATATL   84 (85)
T ss_pred             eEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc--cccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEEEE
Confidence            56789999999999974 7889999999998765432  2235789999999999999999999999999998876

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.31  E-value=8.4e-12  Score=102.08  Aligned_cols=68  Identities=32%  Similarity=0.547  Sum_probs=56.4

Q ss_pred             CCCCeEEEEEEecCCCCCeEEEEeCCcccCC--CceeeecceEEEECCCC-CCCCEEEEEEEEcCCCceEE
Q psy14896        685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPR--NAYFENFNRILTIPNVK-VEDQGEYICRASNDRSALES  752 (813)
Q Consensus       685 ~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~--~~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~N~~G~~~~  752 (813)
                      ..|+++.|.|.+.|+|.|.|+|+|++..+..  ..++...++.|.|.++. .+|+|.|+|.|+|.+|...+
T Consensus        17 ~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S   87 (91)
T cd04967          17 SDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVLS   87 (91)
T ss_pred             CCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence            4567899999999999999999999998843  33444456789999887 49999999999999997654

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.31  E-value=6.9e-12  Score=98.91  Aligned_cols=76  Identities=22%  Similarity=0.347  Sum_probs=50.3

Q ss_pred             EEeeeccCCCCeEEEeecccccccccccccccCCC-ccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeeeeEEe
Q psy14896        214 LSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD-KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLA  291 (813)
Q Consensus       214 l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~  291 (813)
                      |.|.+.|+|.|+|+|||||++|............. .......+.|.|.++ +.+|+|.|+|.|+|..|.+ +.++.|.
T Consensus         3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~-~~~D~G~YtC~A~N~~G~~-~~~~~~~   79 (81)
T cd04971           3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNP-THVNNGNYTLVASNEYGQD-SKSISAH   79 (81)
T ss_pred             EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCC-CcccCeEEEEEEEeCCCCe-eeEEEee
Confidence            78999999999999999998774221000000000 000011346888775 8999999999999999987 4444443

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.30  E-value=1.7e-11  Score=109.46  Aligned_cols=112  Identities=21%  Similarity=0.303  Sum_probs=79.0

Q ss_pred             cEEEEeecccCCeeEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCC-CC-C
Q psy14896        625 ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGY-PV-P  702 (813)
Q Consensus       625 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~-P~-p  702 (813)
                      +|+|.+++.+|+|.|.|.+.+..|...   ..+.|.|..+|.+...  +      ......+|+.++|.|.+.|+ |+ +
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~---~~~~l~v~~~P~v~~~--~------~~~~~~~~~~~~L~C~a~g~~P~~~   70 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQ---QIIQLSVSEPPRVRLS--L------EKLVSMIEEPQTLICHIAGYYPLDV   70 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCccee---eEEEEEEecCCceEEe--C------CCceeecCCcEEEEEEECCCCCCCe
Confidence            689999999999999999998766543   3478888888765332  1      11223478999999999996 54 4


Q ss_pred             eEEEEeCCcccCC------Cce----e------eecceEEEECCCCCCCCEEEEEEEEcCC
Q psy14896        703 SYNWTRRGSPLPR------NAY----F------ENFNRILTIPNVKVEDQGEYICRASNDR  747 (813)
Q Consensus       703 ~i~W~k~g~~l~~------~~~----~------~~~~~~L~i~~v~~~d~G~Y~C~a~N~~  747 (813)
                      .|+|+|+|.....      +..    .      ..-.+.|.|..-..++.+.|+|++.+..
T Consensus        71 ~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~  131 (139)
T cd05771          71 QVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS  131 (139)
T ss_pred             EEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence            8999999865221      111    0      1113468887666667789999998753

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.30  E-value=6.7e-12  Score=97.58  Aligned_cols=70  Identities=30%  Similarity=0.565  Sum_probs=53.8

Q ss_pred             EEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeeeeEEe
Q psy14896        212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLA  291 (813)
Q Consensus       212 v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~  291 (813)
                      ++|.|.+.|.|.|.+.|+|++..+..         ........+++|.|.+. +.+|+|.|+|.|.|..|.. +..+.|.
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~---------~~~~~~~~~~~L~i~~v-~~~D~G~Y~C~a~N~~G~~-~~~~~l~   69 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPA---------DRTKFENFNKTLKIDNV-SEEDDGEYRCTASNSLGSA-RHTISVT   69 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCC---------CceeEecCCCEEEECCC-CHHHCEEEEEEEEeCCceE-EEEEEEE
Confidence            57999999999999999999975421         11122223567888875 8999999999999999987 6666666


Q ss_pred             e
Q psy14896        292 F  292 (813)
Q Consensus       292 v  292 (813)
                      |
T Consensus        70 V   70 (71)
T cd05731          70 V   70 (71)
T ss_pred             E
Confidence            5

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.30  E-value=3.9e-12  Score=99.36  Aligned_cols=68  Identities=28%  Similarity=0.518  Sum_probs=55.9

Q ss_pred             cCCCCCCeEEEEEEecCCCCC-eEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVP-SYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI  758 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p-~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  758 (813)
                      ..+.+|++++|.|.+.|.|.+ .+.|+|||..|..      ..+.|+|.++ .+|+|.|+|+|.|.  ..+..++|+|
T Consensus        10 ~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~------~~~~l~i~~~-~~dsG~Y~C~a~~~--~~S~~v~l~V   78 (78)
T cd05752          10 TTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET------TTNSYRIRAA-NNDSGEYRCQTQGS--SLSDPVHLEV   78 (78)
T ss_pred             eEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec------cCCeEEEeec-ccCCEEeEEECCCC--cCCCCEEEeC
Confidence            567899999999999998864 7999999998732      2568999999 99999999999985  4455555544

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.29  E-value=1.1e-11  Score=96.86  Aligned_cols=77  Identities=19%  Similarity=0.402  Sum_probs=59.6

Q ss_pred             CceeeCCCceeecCCCccccccEEEEeeeccCCCC-eEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccC
Q psy14896        190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED  268 (813)
Q Consensus       190 P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p-~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d  268 (813)
                      |+++..|....+.+|     ++++|+|.+.+.|.+ .+.|||||..+.                ..+++|.|.+.  .+|
T Consensus         1 ~vv~~~P~~~~v~~G-----~~V~L~C~~~~~p~~~~~~W~kng~~l~----------------~~~~~l~i~~~--~~d   57 (78)
T cd05752           1 AVVSLDPPWTTIFQG-----EKVTLTCNGFNSPEQNSTQWYHNGKLLE----------------TTTNSYRIRAA--NND   57 (78)
T ss_pred             CeEEeCCCCeEeeCC-----CCEEEEEeCCCCCCCccEEEEECCEEee----------------ccCCeEEEeec--ccC
Confidence            466777888888777     779999999998864 799999997541                12456777774  899


Q ss_pred             CeeEEEEeecCceeeEeeeeEEee
Q psy14896        269 RGSYHCKASNKFGSIISESVQLAF  292 (813)
Q Consensus       269 ~G~Y~C~a~n~~g~~~s~~~~l~v  292 (813)
                      +|.|+|+|.|.   ..|..++|+|
T Consensus        58 sG~Y~C~a~~~---~~S~~v~l~V   78 (78)
T cd05752          58 SGEYRCQTQGS---SLSDPVHLEV   78 (78)
T ss_pred             CEEeEEECCCC---cCCCCEEEeC
Confidence            99999999985   3366777764

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.29  E-value=1.8e-11  Score=99.95  Aligned_cols=81  Identities=27%  Similarity=0.464  Sum_probs=58.9

Q ss_pred             CCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeC---CeEEEcCCccccCCeeE
Q psy14896        196 PTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSG---GNLIINDPRQVEDRGSY  272 (813)
Q Consensus       196 p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~~d~G~Y  272 (813)
                      |..+.+.+|     +++.|.|.+.|.|.|.+.|||+|..+...        .........   .+|.|.+. +.+|+|.|
T Consensus         8 p~~v~v~eG-----~~v~L~C~v~g~P~p~i~W~k~~~~~~~~--------~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y   73 (92)
T cd05891           8 PDVVTIMEG-----KTLNLTCTVFGNPDPEVIWFKNDQDIELS--------EHYSVKLEQGKYASLTIKGV-TSEDSGKY   73 (92)
T ss_pred             CCcEEEcCC-----CEEEEEEEEEEeCCCeEEEEECCEECCCC--------CCEEEEEcCCCEEEEEECCC-ChhhCEEE
Confidence            456677666     77999999999999999999999865321        111111222   26777775 89999999


Q ss_pred             EEEeecCceeeEeeeeEEe
Q psy14896        273 HCKASNKFGSIISESVQLA  291 (813)
Q Consensus       273 ~C~a~n~~g~~~s~~~~l~  291 (813)
                      +|.|.|..|.. +..+.|.
T Consensus        74 ~C~a~N~~G~~-~~~~~v~   91 (92)
T cd05891          74 SINVKNKYGGE-TVDVTVS   91 (92)
T ss_pred             EEEEEeCCCce-eeEEEEE
Confidence            99999999976 4444444

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.28  E-value=1.1e-11  Score=97.79  Aligned_cols=66  Identities=27%  Similarity=0.502  Sum_probs=51.7

Q ss_pred             cccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe--e--CCeEEEcCCccccCCeeEEEEeecCceeeE
Q psy14896        209 LNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL--S--GGNLIINDPRQVEDRGSYHCKASNKFGSII  284 (813)
Q Consensus       209 g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~--~--~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~  284 (813)
                      |+++.|.|.+.|.|.|.|.|+|++..+.          ...++..  .  .++|.|.+. +.+|+|.|+|.|.|..|...
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~----------~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~N~~G~~~   69 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVP----------DSARVSITSEGGYGTLTIRDV-KESDQGAYTCEAINTRGMVF   69 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECC----------CCCCEEEEECCCEEEEEECCC-ChHHCEEEEEEEEecCCEEE
Confidence            5789999999999999999999987652          1223322  1  246777775 89999999999999999874


Q ss_pred             e
Q psy14896        285 S  285 (813)
Q Consensus       285 s  285 (813)
                      +
T Consensus        70 ~   70 (78)
T cd05743          70 G   70 (78)
T ss_pred             e
Confidence            3

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.28  E-value=1.7e-11  Score=99.51  Aligned_cols=77  Identities=27%  Similarity=0.569  Sum_probs=64.9

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceee-----ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE-----NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI  756 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l  756 (813)
                      ..+..|+.++|.|.+.|.|.|.+.|+|++..+.......     .....|.|.++..+|+|.|.|.|.|..|..+.++.|
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l   83 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV   83 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence            345689999999999999999999999998886543221     223579999999999999999999999999999888


Q ss_pred             EE
Q psy14896        757 SI  758 (813)
Q Consensus       757 ~V  758 (813)
                      .|
T Consensus        84 ~v   85 (85)
T cd05729          84 DV   85 (85)
T ss_pred             eC
Confidence            75

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.28  E-value=1e-11  Score=101.29  Aligned_cols=79  Identities=20%  Similarity=0.313  Sum_probs=64.2

Q ss_pred             CCCceEEeCCCCCCCccEEEEccCCCCCc------ccCCCeEEEeeCccEEEEeecccCCeeEEEEEEeeecCccccCce
Q psy14896        583 NWGKAMFCDPPTNYPGVNYYWARDYFPNF------VEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPF  656 (813)
Q Consensus       583 g~~~~l~C~~~~~~p~~~v~W~k~~~~~~------~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~  656 (813)
                      |+.++|.|.+ .|.|.|.+.|+|++....      .....++.+..+++|+|.++..+|+|.|+|.|.|..|....   .
T Consensus         1 G~~v~L~C~~-~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~---~   76 (90)
T cd05726           1 GRTVTFQCEA-TGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILT---K   76 (90)
T ss_pred             CCEEEEEEEC-CccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEE---E
Confidence            5788999999 899999999999986532      12345777777889999999999999999999999987544   3


Q ss_pred             eeEEEccCC
Q psy14896        657 FPLKVFPHS  665 (813)
Q Consensus       657 ~~l~v~~~p  665 (813)
                      +.|.|....
T Consensus        77 ~~l~V~~~~   85 (90)
T cd05726          77 AYLEVTDVI   85 (90)
T ss_pred             EEEEEeecc
Confidence            777777643

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.28  E-value=1.2e-11  Score=98.11  Aligned_cols=78  Identities=35%  Similarity=0.509  Sum_probs=57.3

Q ss_pred             EEEEeeeccCCCCeEEEeecccccccccccccccCCCccEE-eeCCeEEEcCCccccCCeeEEEEeecCceeeEeeeeEE
Q psy14896        212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL  290 (813)
Q Consensus       212 v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l  290 (813)
                      |+|.|.+.|.|.|.|.|+|++.......  ........++. ..+++|.|.+. +.+|+|.|+|.|.|..|...+..+.|
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~--~~~~~~~~r~~~~~~~~L~I~~v-~~~D~G~Y~C~a~N~~G~~~s~~~~l   77 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQH--THTCCLAGRIQLLSNGSLLIKHV-LEEDSGYYLCKVSNDVGADASKSMVL   77 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCcccccc--ccccccCCCEEEecCCeEEECcC-CcccCEEEEEEEEeCCCCCCceEEEE
Confidence            5799999999999999999864321100  00011233444 35788998885 89999999999999999987888877


Q ss_pred             ee
Q psy14896        291 AF  292 (813)
Q Consensus       291 ~v  292 (813)
                      +|
T Consensus        78 ~~   79 (79)
T cd05734          78 TV   79 (79)
T ss_pred             eC
Confidence            64

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.28  E-value=1.4e-11  Score=98.63  Aligned_cols=75  Identities=24%  Similarity=0.480  Sum_probs=66.3

Q ss_pred             CCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCccEEEccCccEEEeeeeecCCe-eeEEEEeeecccc
Q psy14896        302 RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAG-NYSCNVQSKVSDT  377 (813)
Q Consensus       302 ~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~a~n~~g~~  377 (813)
                      ..+..+.+|+++.|.|.++.|.|.|.|.|++++... +..+.|+.+..+|+|.|.+|+.+|+| .|.|.|.|.....
T Consensus        10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~-i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~~   85 (95)
T cd05845          10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLH-ITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGLRT   85 (95)
T ss_pred             cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCcc-ccccccEEECCCceEEEEEEehhhCCCCeEEEEEcccccc
Confidence            467788999999999998899999999999887654 45688999999999999999999999 8999999987544

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.27  E-value=1.2e-11  Score=100.65  Aligned_cols=78  Identities=22%  Similarity=0.346  Sum_probs=54.5

Q ss_pred             cccEEEEeeeccCCCCeEEEeecccccccccccccccCCCc-----------cEEeeCCeEEEcCCccccCCeeEEEEee
Q psy14896        209 LNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK-----------RFTLSGGNLIINDPRQVEDRGSYHCKAS  277 (813)
Q Consensus       209 g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~-----------~~~~~~~~l~i~~~~~~~d~G~Y~C~a~  277 (813)
                      |+.++|.|.+.|.|.|.|+|+|++..- .   ..+.+....           .+....+.|.|.+. +.+|+|.|+|.|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~-g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~A~   75 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVN-G---SKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNV-SFDDAGEYTCLAG   75 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccC-C---ceeCCCCCceEEEEEecCCcccccccceEEEecc-ccccCcEEEEEee
Confidence            577999999999999999999975210 0   001111111           11112346777775 8999999999999


Q ss_pred             cCceeeEeeeeEEee
Q psy14896        278 NKFGSIISESVQLAF  292 (813)
Q Consensus       278 n~~g~~~s~~~~l~v  292 (813)
                      |..|.. +.++.|.|
T Consensus        76 N~~G~~-~~sa~L~V   89 (90)
T cd04974          76 NSIGPS-HHSAWLTV   89 (90)
T ss_pred             cccCcc-cCCEEEEe
Confidence            999987 66788876

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.26  E-value=3.2e-11  Score=97.79  Aligned_cols=76  Identities=21%  Similarity=0.364  Sum_probs=63.2

Q ss_pred             CcCCCCCCeEEEEEEecCCCCC-eEEEEeCCcccCCC--ceee--------ecceEEEECCCCCCC-CEEEEEEEEcCCC
Q psy14896        681 PEAPKAGDKVRLECVAFGYPVP-SYNWTRRGSPLPRN--AYFE--------NFNRILTIPNVKVED-QGEYICRASNDRS  748 (813)
Q Consensus       681 ~~~~~~G~~v~l~C~~~g~P~p-~i~W~k~g~~l~~~--~~~~--------~~~~~L~i~~v~~~d-~G~Y~C~a~N~~G  748 (813)
                      .+.+.+|++++|.|.+.+.|+| .|.|.+++..|..+  .++.        ...+.|+|.++..+| .|.|.|.|.|.+|
T Consensus        10 s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G   89 (98)
T cd05898          10 VQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFG   89 (98)
T ss_pred             eEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCc
Confidence            4678899999999999999987 68999998887554  2331        235689999998877 7999999999999


Q ss_pred             ceEEEEEE
Q psy14896        749 ALESSVTI  756 (813)
Q Consensus       749 ~~~~~~~l  756 (813)
                      ++...+.|
T Consensus        90 ~d~~~i~L   97 (98)
T cd05898          90 SGTAIIQL   97 (98)
T ss_pred             cceEEEEe
Confidence            99998887

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.26  E-value=2.1e-11  Score=96.42  Aligned_cols=65  Identities=23%  Similarity=0.376  Sum_probs=56.0

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCC-ceeeecceEEEECCCCCCCCEEEEEEEEcCC
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRN-AYFENFNRILTIPNVKVEDQGEYICRASNDR  747 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~  747 (813)
                      ..+..|+++.|.|.+.+ |.|.|+|+|||.+|..+ .++...+..|.|.+++.+|+|.|+|.|.+..
T Consensus         6 ~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           6 RTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             EEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence            56789999999999865 77899999999999766 4555556789999999999999999999863

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.26  E-value=2.6e-11  Score=97.11  Aligned_cols=79  Identities=24%  Similarity=0.426  Sum_probs=55.6

Q ss_pred             cccEEEEeeeccCCCCeEEEeecccccccccccccccCC-CccEE-eeCCeEEEcCCccccCCeeEEEEeecCceeeEee
Q psy14896        209 LNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS-DKRFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE  286 (813)
Q Consensus       209 g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~-~~~~~-~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~  286 (813)
                      |++++|.|.+.|.|.|.|.|||++..-..   ..+.+.. ..++. ...++|.|.+. +.+|+|.|+|.|.|..|.. +.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~---~~~~~~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a~N~~G~~-~~   75 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKEN---LIMRPNHVRGNVVVTNIGQLVIYNA-QPQDAGLYTCTARNSGGLL-RA   75 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcc---eeecCCcccCCEEEccccEEEEccC-CcccCEEEEEEEecCCceE-EE
Confidence            57899999999999999999998531100   0111111 11222 23567888885 8999999999999999986 56


Q ss_pred             eeEEee
Q psy14896        287 SVQLAF  292 (813)
Q Consensus       287 ~~~l~v  292 (813)
                      .+.|.|
T Consensus        76 ~~~l~v   81 (81)
T cd05765          76 NFPLSV   81 (81)
T ss_pred             EEEEeC
Confidence            666654

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.26  E-value=3.7e-11  Score=98.04  Aligned_cols=83  Identities=20%  Similarity=0.364  Sum_probs=58.5

Q ss_pred             eCCCceeecCCCccccccEEEEeeeccCCCCeEEEee-cccccccccccccccCCCccEEeeC----CeEEEcCCccccC
Q psy14896        194 KQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFK-EDYVQDRLVANLIDPLSDKRFTLSG----GNLIINDPRQVED  268 (813)
Q Consensus       194 ~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k-~g~~l~~~~~~~~~~~~~~~~~~~~----~~l~i~~~~~~~d  268 (813)
                      ..|.+..+..|     +++.|.|.+.|.| +.+.|++ ++..+.         ..+......+    ++|.|.+. +.+|
T Consensus         5 v~p~~~~v~~G-----~~~~l~C~~~G~p-~~i~W~~~~~~~~~---------~~~~~~~~~~~~~~~~L~I~~v-~~~D   68 (92)
T cd04977           5 IVPSQGEISVG-----ESKFFLCQVIGEP-KDISWFSPNGEKLV---------TQQQISVVQNDDVRSTLTIYNA-NIED   68 (92)
T ss_pred             EecCcEEECCC-----CeEEEEEEeEeeC-CeEEEECCCCCEec---------cCCCEEEEeCCCCEEEEEEecC-Cccc
Confidence            44666777777     7799999999987 4999998 554431         1122222222    36888875 8999


Q ss_pred             CeeEEEEeecCceeeEeeeeEEee
Q psy14896        269 RGSYHCKASNKFGSIISESVQLAF  292 (813)
Q Consensus       269 ~G~Y~C~a~n~~g~~~s~~~~l~v  292 (813)
                      +|.|+|.|.|..|...+.++.|.|
T Consensus        69 ~G~Y~C~A~N~~g~~~~~sv~l~~   92 (92)
T cd04977          69 AGIYKCVATDAKGTESEATVNLKI   92 (92)
T ss_pred             CEEEEEEEEcCCCCcceeEEEEEC
Confidence            999999999998765466666653

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.25  E-value=2.1e-11  Score=98.11  Aligned_cols=75  Identities=24%  Similarity=0.467  Sum_probs=55.2

Q ss_pred             ccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeee
Q psy14896        208 ILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISES  287 (813)
Q Consensus       208 ~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~  287 (813)
                      .|+++.|.|.+.|.|.|.+.|+|+|..+...        ..........+|.|.+. +.+|+|.|+|.|.|..|.. +..
T Consensus         8 ~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~--------~~~~~~~~~~~L~i~~v-~~~D~G~Y~C~a~N~~G~~-~~~   77 (82)
T cd05856           8 VGSSVRLKCVASGNPRPDITWLKDNKPLTPT--------EIGESRKKKWTLSLKNL-KPEDSGKYTCHVSNRAGEI-NAT   77 (82)
T ss_pred             CCCeEEEEEEeeEeCCCcEEEEECCcCCcCC--------ccceecCceEEEEEccC-ChhhCEEEEEEEEcCCccE-EEE
Confidence            3578999999999999999999999865311        11111112356777775 8999999999999999976 555


Q ss_pred             eEEee
Q psy14896        288 VQLAF  292 (813)
Q Consensus       288 ~~l~v  292 (813)
                      +.|.|
T Consensus        78 ~~v~v   82 (82)
T cd05856          78 YKVDV   82 (82)
T ss_pred             EEEeC
Confidence            65543

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.24  E-value=3.3e-11  Score=98.15  Aligned_cols=78  Identities=23%  Similarity=0.370  Sum_probs=63.9

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCC----ceeeecceEEEECCCCCCCCEEEEEEEEcCC-CceEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRN----AYFENFNRILTIPNVKVEDQGEYICRASNDR-SALESSVTI  756 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~----~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~-G~~~~~~~l  756 (813)
                      ..+.+|+++.|.|.+.+ |.+.+.|+|++..+...    .++......|.|.+++.+|+|.|.|.|.|.. +....++.|
T Consensus         6 ~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l   84 (89)
T cd04979           6 VTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLATYSL   84 (89)
T ss_pred             EEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeEEEE
Confidence            45788999999999987 88899999999887654    2444445679999999999999999999764 557778888


Q ss_pred             EEEc
Q psy14896        757 SIQA  760 (813)
Q Consensus       757 ~V~~  760 (813)
                      .|.+
T Consensus        85 ~V~~   88 (89)
T cd04979          85 NVLE   88 (89)
T ss_pred             EEec
Confidence            8853

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.23  E-value=2.6e-11  Score=98.87  Aligned_cols=82  Identities=20%  Similarity=0.271  Sum_probs=54.0

Q ss_pred             cccEEEEeeeccCCCCeEEEeecc----cccccccccccccCCCccEEee---CCeEEEcCCccccCCeeEEEEeecCce
Q psy14896        209 LNDITLSCYAGGYPNPSYEWFKED----YVQDRLVANLIDPLSDKRFTLS---GGNLIINDPRQVEDRGSYHCKASNKFG  281 (813)
Q Consensus       209 g~~v~l~C~~~g~P~p~v~W~k~g----~~l~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~~d~G~Y~C~a~n~~g  281 (813)
                      |++++|.|.+.|.|.|.|+|+|++    ..+...............+...   .++|.|.+. +.+|+|.|+|.|.|..|
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~A~N~~G   79 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNV-TFEDAGEYTCLAGNSIG   79 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccC-CHHHCEEEEEEEEeCCC
Confidence            578999999999999999999953    3221000000000000000011   146888875 89999999999999999


Q ss_pred             eeEeeeeEEee
Q psy14896        282 SIISESVQLAF  292 (813)
Q Consensus       282 ~~~s~~~~l~v  292 (813)
                      .. +.++.|.|
T Consensus        80 ~~-~~~a~L~V   89 (90)
T cd05858          80 IS-HHSAWLTV   89 (90)
T ss_pred             cc-cceEEEEE
Confidence            87 66777776

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.22  E-value=8.6e-11  Score=97.56  Aligned_cols=86  Identities=24%  Similarity=0.380  Sum_probs=61.2

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCC-eEEEeecccccccccccccccCCCccEEeeC--------CeEE
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPLSDKRFTLSG--------GNLI  259 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p-~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~--------~~l~  259 (813)
                      ||.|. .+....+.+|     +++.|.|.+.|.|.| .|.|++++..+..        ..+.++.+..        ++|.
T Consensus         2 pp~i~-~~~~~~~~~G-----~~v~L~C~~~g~P~P~~v~W~~~~~~i~~--------~~~~r~~i~~~~~~~~~~s~L~   67 (98)
T cd05758           2 PPIIT-SEATQYAILG-----DKGRVECFIFSTPPPDRIVWTWKENELES--------GSSGRYTVETDPSPGGVLSTLT   67 (98)
T ss_pred             CCeEc-CCCcEEEeCC-----CcEEEEEEEcccCCCCEeEEEECCEEccC--------CCCCCEEEEEecCCCceEEEEE
Confidence            46664 3556666666     779999999999999 6999999976632        2223444321        2678


Q ss_pred             EcCCccc-cCCeeEEEEeecCceeeEeeeeEE
Q psy14896        260 INDPRQV-EDRGSYHCKASNKFGSIISESVQL  290 (813)
Q Consensus       260 i~~~~~~-~d~G~Y~C~a~n~~g~~~s~~~~l  290 (813)
                      |.+. +. +|.|.|+|.|.|..|.+ ...+.|
T Consensus        68 I~~v-~~~d~~G~Y~C~A~N~~G~~-~~~~~L   97 (98)
T cd05758          68 ISNT-QESDFQTSYNCTAWNSFGSG-TAIISL   97 (98)
T ss_pred             ECCc-cccccceeEEEEEEcCCCcc-cEEEEe
Confidence            8775 66 55999999999999986 444444

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.21  E-value=5.5e-11  Score=96.80  Aligned_cols=77  Identities=23%  Similarity=0.426  Sum_probs=58.6

Q ss_pred             CcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccC--------CCceee-----ecceEEEECCCCCCCCEEEEEEEEcCC
Q psy14896        681 PEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLP--------RNAYFE-----NFNRILTIPNVKVEDQGEYICRASNDR  747 (813)
Q Consensus       681 ~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~--------~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~N~~  747 (813)
                      +..+.+|+++.|.|.+.|.|.|.|.|+|++..+.        .+.++.     ....+|.|.+++.+|+|.|+|.|.. .
T Consensus         6 ~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t-~   84 (95)
T cd05882           6 DETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT-M   84 (95)
T ss_pred             cEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe-e
Confidence            3678899999999999999999999999876431        122222     1246899999999999999999987 3


Q ss_pred             CceEEEEEEEE
Q psy14896        748 SALESSVTISI  758 (813)
Q Consensus       748 G~~~~~~~l~V  758 (813)
                      -..++.++|+|
T Consensus        85 ~~~~~~~~~~v   95 (95)
T cd05882          85 PVRTAKATVTV   95 (95)
T ss_pred             ccccEEEEEEC
Confidence            34555555554

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.21  E-value=5.8e-11  Score=105.96  Aligned_cols=77  Identities=26%  Similarity=0.451  Sum_probs=68.3

Q ss_pred             EEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCCcccccCCceeecCCCeEEEEEEEccc-CC-ceEEEEECCEe
Q psy14896        725 ILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGV-PD-VTYSWFRNGEL  801 (813)
Q Consensus       725 ~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~-p~-~~v~W~k~g~~  801 (813)
                      +|+|.+++.+|+|.|.|.+.|..|..+..+.|.|..+|.+...+.......|..++|.|.+.|. |+ +.|+|+|+|..
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~   80 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG   80 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence            6999999999999999999999999999999999999998776666555588999999999996 54 58999999865

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.21  E-value=6.8e-11  Score=96.81  Aligned_cols=77  Identities=18%  Similarity=0.312  Sum_probs=59.1

Q ss_pred             CcCCCCCCeEEEEEEecCCCCCeEEEEeCC--------cccCCCceee-----ecceEEEECCCCCCCCEEEEEEEEcCC
Q psy14896        681 PEAPKAGDKVRLECVAFGYPVPSYNWTRRG--------SPLPRNAYFE-----NFNRILTIPNVKVEDQGEYICRASNDR  747 (813)
Q Consensus       681 ~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g--------~~l~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~N~~  747 (813)
                      +..+.+|++++|.|.+.+.|.|.|.|++.+        .....+.++.     ....+|+|.+++.+|+|.|+|.+.+. 
T Consensus         6 ~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~-   84 (95)
T cd07701           6 NVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTM-   84 (95)
T ss_pred             eEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEee-
Confidence            467899999999999999999999998632        2222223332     23468999999999999999999985 


Q ss_pred             CceEEEEEEEE
Q psy14896        748 SALESSVTISI  758 (813)
Q Consensus       748 G~~~~~~~l~V  758 (813)
                      ...+..+.|+|
T Consensus        85 ~~~~~~~~l~v   95 (95)
T cd07701          85 PVKTSKAYLTV   95 (95)
T ss_pred             cCccEEEEEEC
Confidence            44477777765

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.19  E-value=5.5e-11  Score=95.15  Aligned_cols=74  Identities=23%  Similarity=0.475  Sum_probs=64.3

Q ss_pred             CCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCccEEEEeecccCCe-eEEEEEEeeecC
Q psy14896        575 RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAG-NYSCNVQSKVSD  649 (813)
Q Consensus       575 ~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~a~n~~g~  649 (813)
                      ..+..+.+|+++.|.|..+.|.|.|.|.|++++... +..+.|+.+..+|+|.|.++..+|+| .|.|.|.|.+..
T Consensus        10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~-i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~   84 (95)
T cd05845          10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLH-ITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGLR   84 (95)
T ss_pred             cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCcc-ccccccEEECCCceEEEEEEehhhCCCCeEEEEEccccc
Confidence            356678899999999997799999999999887643 45678999999999999999999999 899999998743

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.17  E-value=9.9e-11  Score=92.63  Aligned_cols=70  Identities=23%  Similarity=0.409  Sum_probs=56.9

Q ss_pred             CCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEE
Q psy14896        195 QPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHC  274 (813)
Q Consensus       195 ~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C  274 (813)
                      +|.+..+..|     +++.|.|.+.+ |.|+|.|+|||.+|.         ....++.+.++.|+|.+. +.+|+|.|+|
T Consensus         2 ~P~~~~v~~G-----~~v~L~C~~~~-~~~~i~W~~ng~~i~---------~~~~r~~~~~~~L~I~nv-~~~DsG~Y~C   65 (87)
T cd05873           2 DPRQRTFKLG-----NNAELKCSPKS-NLARVVWKFDGKVLT---------PESAKYLLYRDGLLIFNA-SEADAGRYQC   65 (87)
T ss_pred             CcceEEEECC-----CCEEEEEECCC-CCCeEEEEECCEECC---------CCCceEEEECCcEEEeCC-CHHHCEEEEE
Confidence            4677788777     66999999876 788999999998763         122467778889999985 8999999999


Q ss_pred             EeecCc
Q psy14896        275 KASNKF  280 (813)
Q Consensus       275 ~a~n~~  280 (813)
                      .|.+..
T Consensus        66 ~a~e~~   71 (87)
T cd05873          66 LSVEKS   71 (87)
T ss_pred             EEEecc
Confidence            999763

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.17  E-value=7e-11  Score=92.98  Aligned_cols=73  Identities=18%  Similarity=0.279  Sum_probs=57.8

Q ss_pred             ceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCc-cEEEEeecccCCeeEEEEEEeeecCccccCceeeEEEc
Q psy14896        586 KAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDG-ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF  662 (813)
Q Consensus       586 ~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~-~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~  662 (813)
                      +.|.|.+ .|.|.|.+.|+|++..+......++....++ +|.|.++..+|.|.|+|.|.|..|.+..   .+.|.|.
T Consensus         1 ~~L~C~v-~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~---~~~l~V~   74 (76)
T cd05736           1 ASLRCHA-EGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDED---ISSLFVE   74 (76)
T ss_pred             CEeEeEe-eecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcce---EEEEEEE
Confidence            4689999 7999999999999987544434455555555 4999999999999999999999987644   3666664

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.15  E-value=8.7e-11  Score=93.45  Aligned_cols=73  Identities=23%  Similarity=0.427  Sum_probs=58.5

Q ss_pred             cCCCCCCeEEEEEEec-CCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCce-EEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAF-GYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSAL-ESSVTISI  758 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~-g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V  758 (813)
                      ..+.+|++++|.|.+. +.|.+.+.|+|+|..+...    .....|.|.+++.+|+|.|+|.|.|..|.. +..+.|+|
T Consensus         9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~----~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~~   83 (83)
T cd05753           9 RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS----HSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSITV   83 (83)
T ss_pred             ceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc----CCCceEEECccCHHHCEEEEEEEEeCCceecCCCEEEEC
Confidence            3578999999999986 4667789999999877532    235689999999999999999999998853 44555554

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.15  E-value=1.7e-10  Score=87.32  Aligned_cols=63  Identities=41%  Similarity=0.758  Sum_probs=54.4

Q ss_pred             CCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCC
Q psy14896        686 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRS  748 (813)
Q Consensus       686 ~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G  748 (813)
                      +|++++|.|.+.+.|.+.+.|++++..+............|.|.+++.+|+|.|+|.|.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            489999999999999999999999988874334445567899999999999999999999876

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.14  E-value=2.6e-10  Score=92.81  Aligned_cols=85  Identities=18%  Similarity=0.215  Sum_probs=62.4

Q ss_pred             CCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEE
Q psy14896        196 PTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCK  275 (813)
Q Consensus       196 p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~  275 (813)
                      |..+.+.+|     +++.|.|.+.+ |.+.+.|||++..+...      .....++....+.|.|.+. +.+|+|.|+|.
T Consensus         3 ~~~~~v~~g-----~~v~L~C~~~~-p~~~i~W~k~~~~~~~~------~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~   69 (89)
T cd04979           3 EKVVTVVEG-----NSVFLECSPKS-NLASVVWLFQGGPLQRK------EEPEERLLVTEDGLLIRSV-SPADAGVYTCQ   69 (89)
T ss_pred             ceEEEEECC-----CcEEEEEeCCC-CCceEEEEECCcccccc------cCcCceEEEcCCCEEEccC-CHHHCEEEEEE
Confidence            445566566     77999999988 88999999999765221      0112345555667888775 89999999999


Q ss_pred             eecCceeeEeeeeEEeee
Q psy14896        276 ASNKFGSIISESVQLAFG  293 (813)
Q Consensus       276 a~n~~g~~~s~~~~l~v~  293 (813)
                      |.|..+...+.++.|.|.
T Consensus        70 a~~~~~~~~~~~~~l~V~   87 (89)
T cd04979          70 SVEHGFKQTLATYSLNVL   87 (89)
T ss_pred             EecCccceeEeEEEEEEe
Confidence            998777666667777763

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.14  E-value=9.8e-11  Score=92.11  Aligned_cols=64  Identities=28%  Similarity=0.626  Sum_probs=48.3

Q ss_pred             EEEEeeecc-CCCCeEEEeecccccccccccccccCCCccEEe----eCCeEEEcCCccccCCeeEEEEeecCceee
Q psy14896        212 ITLSCYAGG-YPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL----SGGNLIINDPRQVEDRGSYHCKASNKFGSI  283 (813)
Q Consensus       212 v~l~C~~~g-~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~  283 (813)
                      ++|.|.+.| .|.|.+.|||+|+++....       ....+.+    ..++|.|.+. +.+|+|.|+|.|.|..|.+
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~-------~~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a~N~~G~~   69 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKN-------KPRNIKIRNKKKNSELQINKA-KLADSGEYTCVVENILGND   69 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccC-------CcceEEEEecCceEEEEEccC-CcccCeEEEEEEEEcCCce
Confidence            479999999 9999999999998764211       0011111    2356788775 8999999999999999976

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.14  E-value=2.3e-10  Score=92.59  Aligned_cols=78  Identities=19%  Similarity=0.290  Sum_probs=61.5

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCC--cc----cCCCceeeecceEEEECCCCCCCCEEEEEEEE-cCCCceEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRG--SP----LPRNAYFENFNRILTIPNVKVEDQGEYICRAS-NDRSALESSV  754 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g--~~----l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~-N~~G~~~~~~  754 (813)
                      +.+.+|+++.|.|.. +.|.|.++|||.+  ..    +..+.++....+.|.|.+++.+|+|.|+|.|. |..|.....+
T Consensus         6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~   84 (91)
T cd05871           6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAKY   84 (91)
T ss_pred             EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEccCCeEEEEEE
Confidence            446789999999997 5899999999843  22    12233444456779999999999999999998 5778788899


Q ss_pred             EEEEEc
Q psy14896        755 TISIQA  760 (813)
Q Consensus       755 ~l~V~~  760 (813)
                      +|.|..
T Consensus        85 ~l~v~~   90 (91)
T cd05871          85 TLHVIE   90 (91)
T ss_pred             EEEEec
Confidence            998864

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.12  E-value=3e-10  Score=91.08  Aligned_cols=74  Identities=27%  Similarity=0.455  Sum_probs=58.7

Q ss_pred             CCeEEEEEEecCCCC--CeEEEEeCCcccCCCc-----ee-----eecceEEEECCCCCCCCEEEEEEEEcCCCceEEEE
Q psy14896        687 GDKVRLECVAFGYPV--PSYNWTRRGSPLPRNA-----YF-----ENFNRILTIPNVKVEDQGEYICRASNDRSALESSV  754 (813)
Q Consensus       687 G~~v~l~C~~~g~P~--p~i~W~k~g~~l~~~~-----~~-----~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~  754 (813)
                      |+++.|.|.+.+.|.  ..+.|.++++.+....     +.     ....++|.|.+++.+|+|.|+|.|.|..|....+.
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t   80 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST   80 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence            789999999987664  4789999886442111     00     12356899999999999999999999999999999


Q ss_pred             EEEEEc
Q psy14896        755 TISIQA  760 (813)
Q Consensus       755 ~l~V~~  760 (813)
                      .|.|++
T Consensus        81 ~~~V~~   86 (86)
T cd05862          81 IVIVHE   86 (86)
T ss_pred             EEEEeC
Confidence            998863

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.11  E-value=2.2e-10  Score=91.17  Aligned_cols=74  Identities=23%  Similarity=0.359  Sum_probs=57.4

Q ss_pred             eeecCCCccccccEEEEeeec-cCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEee
Q psy14896        199 VVFDLSKRSILNDITLSCYAG-GYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKAS  277 (813)
Q Consensus       199 ~~v~~g~~~~g~~v~l~C~~~-g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~  277 (813)
                      ..+.+|     ++++|+|.+. +.|.+.+.|||+|..+.              +...+.+|.|.+. +.+|+|.|+|.|.
T Consensus         9 ~~V~~G-----~~vtL~C~~~~~~~~~~~~w~k~g~~~~--------------~~~~~~~l~I~~~-~~~dsG~Y~C~~~   68 (83)
T cd05753           9 RVVFEG-----EPLVLRCHGWKNKPVYKVTYYRDGKAKK--------------YSHSNSNLSIPQA-TLSDSGSYHCSGI   68 (83)
T ss_pred             ceecCC-----CCEEEEeeCCCCCcceEEEEEECCeEcc--------------ccCCCceEEECcc-CHHHCEEEEEEEE
Confidence            345555     7799999995 45677899999997541              1112457888875 8999999999999


Q ss_pred             cCceeeEeeeeEEee
Q psy14896        278 NKFGSIISESVQLAF  292 (813)
Q Consensus       278 n~~g~~~s~~~~l~v  292 (813)
                      |..|...|..+.|+|
T Consensus        69 ~~~~~~~s~~~~i~~   83 (83)
T cd05753          69 IGSYDYSSEPVSITV   83 (83)
T ss_pred             eCCceecCCCEEEEC
Confidence            999988888888765

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.10  E-value=3.2e-10  Score=89.18  Aligned_cols=65  Identities=26%  Similarity=0.575  Sum_probs=47.6

Q ss_pred             EEEEeeec-cCCCCeEEEeecccccccccccccccCCCccEEee----CCeEEEcCCccccCCeeEEEEeecCceee
Q psy14896        212 ITLSCYAG-GYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS----GGNLIINDPRQVEDRGSYHCKASNKFGSI  283 (813)
Q Consensus       212 v~l~C~~~-g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~  283 (813)
                      +.|+|.+. +.|.+.++|||+|+++...      .....++...    .++|.|.+. +.+|+|.|+|.|+|..|..
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~------~~~~~~~~~~~~~~~~~L~I~~~-~~~DsG~Y~C~a~N~~g~~   70 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAK------NKPDNKIKIRKKKKSSELQISKA-SLADNGEYKCMVSSKLGND   70 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccC------CCCCceEEEEeCCcEEEEEECcC-CcccCEEEEEEEEeCCCce
Confidence            47999986 4788999999999876321      1112223322    356888775 8999999999999999976

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.09  E-value=3.6e-10  Score=90.83  Aligned_cols=81  Identities=20%  Similarity=0.252  Sum_probs=55.4

Q ss_pred             cccEEEEeeeccC--CCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEee
Q psy14896        209 LNDITLSCYAGGY--PNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE  286 (813)
Q Consensus       209 g~~v~l~C~~~g~--P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~  286 (813)
                      |++++|.|.+.|.  |.|.|+|++++..+......... ..........++|.|.+. +.+|+|.|+|.|+|..|.. +.
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~-~~~~~~~~~~s~L~I~~v-~~~DsG~Y~C~a~n~~~~~-~~   77 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTR-QSLSEATELSSTLTIPNA-TLKDSGTYTCAASSGTMDQ-KE   77 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecc-cccccceEEEEEEEECCC-ChhhCEEEEEEEccCCCce-EE
Confidence            5889999999998  88999999998765322110000 000000112356888775 9999999999999999876 55


Q ss_pred             eeEEee
Q psy14896        287 SVQLAF  292 (813)
Q Consensus       287 ~~~l~v  292 (813)
                      ++.|.|
T Consensus        78 s~~v~v   83 (84)
T cd05742          78 STKVNI   83 (84)
T ss_pred             EEEEEE
Confidence            666654

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=99.07  E-value=3.1e-10  Score=91.29  Aligned_cols=77  Identities=17%  Similarity=0.275  Sum_probs=59.0

Q ss_pred             cCCCCCCeEEEEEEe-cC----CCCCeEEEEeCCcccCCCc-eeee--cceEEEECCCCCCCCEEEEEEEEcCCCce---
Q psy14896        682 EAPKAGDKVRLECVA-FG----YPVPSYNWTRRGSPLPRNA-YFEN--FNRILTIPNVKVEDQGEYICRASNDRSAL---  750 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~-~g----~P~p~i~W~k~g~~l~~~~-~~~~--~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~---  750 (813)
                      +.+..|.+..|.|.- .+    ++.|.|+||||+.+|.... ++..  ....|.|.++..+|+|.|+|+|.|.+|..   
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y~   84 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKKYN   84 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEEEE
Confidence            456789999999972 33    4677999999999987543 2222  34679999999999999999999998754   


Q ss_pred             -EEEEEEEE
Q psy14896        751 -ESSVTISI  758 (813)
Q Consensus       751 -~~~~~l~V  758 (813)
                       ++.+.|.|
T Consensus        85 vtr~~~l~v   93 (95)
T cd05897          85 ITRIIKLRI   93 (95)
T ss_pred             EEEEEEEEE
Confidence             44555555

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.05  E-value=1.1e-09  Score=88.18  Aligned_cols=77  Identities=23%  Similarity=0.356  Sum_probs=57.3

Q ss_pred             CCCceeecCCCccccccEEEEeeecc-CCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEE
Q psy14896        195 QPTDVVFDLSKRSILNDITLSCYAGG-YPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYH  273 (813)
Q Consensus       195 ~p~~~~v~~g~~~~g~~v~l~C~~~g-~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~  273 (813)
                      .|....+.+|     ++++|.|.+.+ .|.+.+.|+|++..+..            +....+++|.|.+. +.+|+|.|+
T Consensus         7 ~p~~~~v~~G-----~~v~L~C~~~~~~~~~~i~W~~~~~~~~~------------~~~~~~~~L~I~~v-~~~DsG~Y~   68 (85)
T cd05754           7 EPRSQEVRPG-----ADVSFICRAKSKSPAYTLVWTRVGGGLPS------------RAMDFNGILTIRNV-QLSDAGTYV   68 (85)
T ss_pred             CCCceEEcCC-----CCEEEEEEcCCCCCCcEEEEEECCCcCCC------------cccccCCEEEECCC-CHHHCEEEE
Confidence            3556677666     67999999964 78899999999965311            11223677888875 899999999


Q ss_pred             EEeecCceeeEeeeeEE
Q psy14896        274 CKASNKFGSIISESVQL  290 (813)
Q Consensus       274 C~a~n~~g~~~s~~~~l  290 (813)
                      |.|.|..|.. +..+.|
T Consensus        69 C~a~n~~g~~-~~~~~l   84 (85)
T cd05754          69 CTGSNMLDTD-EATATL   84 (85)
T ss_pred             EEEeccCCeE-eEEEEE
Confidence            9999999977 444443

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.04  E-value=5.1e-10  Score=90.48  Aligned_cols=72  Identities=19%  Similarity=0.284  Sum_probs=56.1

Q ss_pred             CceeccCCCceEEeCCCCC----CCccEEEEccCCCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEEEEeeecCcc
Q psy14896        577 PEIGNQNWGKAMFCDPPTN----YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTG  651 (813)
Q Consensus       577 ~~~~~~g~~~~l~C~~~~~----~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  651 (813)
                      .+.+.+|++..|.|....+    +|.|.+.||||+.++.  ...+.. ..+++|.|.++..+|+|.|+|.|.|..+...
T Consensus         4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~--~~~~~~-~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~   79 (92)
T cd05757           4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLE--GDRKRF-VKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQ   79 (92)
T ss_pred             eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECC--CCccEE-ecCCEEEEeeCChhhCEEEEEEEEecCCCEE
Confidence            3567789999999987433    3678999999998743  333332 3677899999999999999999999887643

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=99.04  E-value=1e-09  Score=84.70  Aligned_cols=70  Identities=17%  Similarity=0.334  Sum_probs=53.9

Q ss_pred             eEEEEEEec-CCCCCeEEEEeCCcccCCCce------eeecceEEEECCCCCCCCEEEEEEEEcCCCc---eEEEEEEEE
Q psy14896        689 KVRLECVAF-GYPVPSYNWTRRGSPLPRNAY------FENFNRILTIPNVKVEDQGEYICRASNDRSA---LESSVTISI  758 (813)
Q Consensus       689 ~v~l~C~~~-g~P~p~i~W~k~g~~l~~~~~------~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~---~~~~~~l~V  758 (813)
                      .++|+|.+. |.|++.|+|||||++|.....      .....++|.|.....+|++.|+|+|.|..+.   .+.+..|.|
T Consensus         1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~~~~~~~~~l~V   80 (80)
T cd05885           1 EVELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVSQKKQTQYSLDV   80 (80)
T ss_pred             CEEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCCCCeeEEEEEeC
Confidence            378999987 889999999999999965321      1122457999999999999999999999765   345555543

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.03  E-value=1.2e-09  Score=88.84  Aligned_cols=85  Identities=20%  Similarity=0.302  Sum_probs=56.8

Q ss_pred             CceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEee-----CCeEEEcCCccccCCee
Q psy14896        197 TDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS-----GGNLIINDPRQVEDRGS  271 (813)
Q Consensus       197 ~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~~d~G~  271 (813)
                      ++..+.+|     +++.|+|.+.|.|.|.|.|+|+++.+......  ....+.++.+.     +.+|.|.+. +.+|+|.
T Consensus         5 ~~~tv~~G-----~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~--~~~~~~r~~~~~~~~~~~~L~I~nV-~~~D~G~   76 (95)
T cd05882           5 QDETVAVG-----GTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEK--RALRDNRIQLVKSTPTELIISISNV-QLSDEGE   76 (95)
T ss_pred             ccEEEecC-----CcEEEEEEEeCCCCCeEEEeccCccEEEeCCe--EEEeCCeEEEEeCCCceEEEEECCC-CcccCEE
Confidence            45666666     77999999999999999999998754211100  01123344322     357888885 8999999


Q ss_pred             EEEEeecCceeeEeeeeEEe
Q psy14896        272 YHCKASNKFGSIISESVQLA  291 (813)
Q Consensus       272 Y~C~a~n~~g~~~s~~~~l~  291 (813)
                      |+|.|....  ..+..++|.
T Consensus        77 YtC~~~t~~--~~~~~~~~~   94 (95)
T cd05882          77 YTCSIFTMP--VRTAKATVT   94 (95)
T ss_pred             EEEEEEeec--cccEEEEEE
Confidence            999998722  224445544

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>TIGR00864 PCC polycystin cation channel protein

Probab=99.03  E-value=4.6e-05  Score=94.01  Aligned_cols=533  Identities=12%  Similarity=0.092  Sum_probs=274.4

Q ss_pred             ceeeeeeeCCCCCCCCCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe
Q psy14896        174 YQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL  253 (813)
Q Consensus       174 ~~~~l~v~~p~~~~~~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~  253 (813)
                      .+..+.|..|.     .-|...+....+..+     .++.|+=.........+.|...+....        ...      
T Consensus      1501 ~T~~VtV~~pV-----~~~tinas~~~vpl~-----~sV~Fta~~s~Gs~v~ysWdFGDg~ts--------~~~------ 1556 (2740)
T TIGR00864      1501 ATLNVAVKARV-----RGLTINASLTNVPLN-----GSVHFEAHLDAGDDVRFSWILCDHCTP--------IFG------ 1556 (2740)
T ss_pred             EEEEEEEeccc-----cceEEcCCCcccccc-----ceEEEEEEccCCCceeEEEEeCCCCcc--------ccC------
Confidence            34445555442     124444444444444     458888544322345899988764210        000      


Q ss_pred             eCCeEEEcCCccccCCeeEEEEee--cCceeeEeeeeEEeeeeecc-cccCCC-------------CceeecCCCeEEEe
Q psy14896        254 SGGNLIINDPRQVEDRGSYHCKAS--NKFGSIISESVQLAFGFIGE-FNLKRA-------------PEIGNQNWGKAMFC  317 (813)
Q Consensus       254 ~~~~l~i~~~~~~~d~G~Y~C~a~--n~~g~~~s~~~~l~v~~~~~-~~~~~~-------------~~~~~~~~~~~l~C  317 (813)
                       +.+  ...  +-...|.|+-..+  |..|.. .+++.+.|..+-. +.+...             ......+..+.|.=
T Consensus      1557 -npt--~~y--TY~spGtYtVtLTvtN~~Gs~-~~T~~i~V~~~I~GlqI~~~~~~gg~~~~~~~~~~~~~t~~~v~l~~ 1630 (2740)
T TIGR00864      1557 -GNT--IFY--TFRSVGTFNIIVTAENDVGAA-QASIFLFVLQEIEGLQILGETAEGGGGGVQELDGCYFETNHTVQFHA 1630 (2740)
T ss_pred             -CCc--eEE--eecCCceEEEEEEEecCCCcc-ceeEEEEEeecccceEEEeecccccCCcccccccceeccCCEEEeee
Confidence             111  011  2455688877655  888875 4455555543211 111110             01112222233333


Q ss_pred             cCCCCCCcceEEEeeccccccccCCccEEEccCccEEEeeeeecCCeeeEEE--EeeeccccCCCCCceeeEEccCCccc
Q psy14896        318 DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCN--VQSKVSDTGRNGPFFPLKVFPHSNFQ  395 (813)
Q Consensus       318 ~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~--a~n~~g~~~~~s~~~~l~v~~~~~~~  395 (813)
                      .+..| -...+.|...+..   ..+.... ...|  ....++..+.|.|...  |+|..|....   ...+.|..+-.-.
T Consensus      1631 ~~~~G-TnvsysW~~~~~n---~~dg~~~-~~tG--k~~~vt~~~pG~Y~VtL~aSN~vG~~t~---s~~i~v~epi~~L 1700 (2740)
T TIGR00864      1631 GFKDG-TNLSFSWNAILDN---EPDGPAF-AGSG--KGAKLNPLEAGPCDIFLQAANLLGQATA---DCTIDFLEPAGNL 1700 (2740)
T ss_pred             ccCCC-CeeEEEEEEecCC---CCCCccc-cccC--ceeEEecCCCceEEEEEEEeecccceee---EEEEEEEEEcCce
Confidence            33333 4467788652110   0000000 1112  2333445777887765  6677665432   2455554432222


Q ss_pred             ccccCCCCCCCCCcCCCCCCcEEEEEEEeecCCCeeeEeecCCcCC--CCceeccccceEEEcccccccceEEeC-----
Q psy14896        396 QLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLP--RNAYFENFNRILTIPNVKMRGPYFIKQ-----  468 (813)
Q Consensus       396 ~~~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~~~~l~--~~~~~~~~~~~l~i~~~~~~g~y~~~~-----  468 (813)
                      .+.       ..+..+..|+++.|.-...+-....+.|...+..-.  ....        ..+.....|.|.+..     
T Consensus      1701 ~L~-------aS~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~~s~p~--------~tHtf~~~G~y~VtVta~N~ 1765 (2740)
T TIGR00864      1701 MLQ-------ASDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDLETSEPF--------MSHSFPSAGLHLVTMKAFNE 1765 (2740)
T ss_pred             EEe-------ccCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCcccCCCc--------eEEEccCCceEEEEEEEEcc
Confidence            221       122356779999999877776777999987665311  1110        011122233333221     


Q ss_pred             ---------------CCceEeccc------ccccccCeEEEEEeeccCCCcEEEeeccccccceeccccCCCCCceEEee
Q psy14896        469 ---------------PTDVVFDLS------KRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS  527 (813)
Q Consensus       469 ---------------~~~~~~~~~------~~~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~  527 (813)
                                     ...+.+...      -...|..+.|.-.+.-.-+..+.|..++..          ..       .
T Consensus      1766 vss~~~s~~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~----------s~-------~ 1828 (2740)
T TIGR00864      1766 LGSANASEEVDVQEPISGLKIRAADAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGS----------SK-------M 1828 (2740)
T ss_pred             ccccceeEEEEEEeccccceEecCCCCcccceecCcEEEEEEEccCCCeeEEEEEeCCCC----------cc-------c
Confidence                           011111000      112345566665543333347888776521          00       0


Q ss_pred             CCeEEEeCCCCCCCCceEEE--EEEcCceeEEeecEEEEEeecc-cccccCCCceeccCCCceEEeCCCCCCCccEEEEc
Q psy14896        528 GGNLIINDPRQVEDRGSYHC--KASNKFGSIISESVQLAFGFIG-EFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWA  604 (813)
Q Consensus       528 ~~~l~i~~~~~~~d~G~Y~C--~a~n~~g~~~s~~~~l~v~~~p-~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~  604 (813)
                      +....    ....+.|.|+.  .|.|..+... .+..+.|+.+. .+.....+.....|+.++|++.+..| +...+.|.
T Consensus      1829 gk~v~----~Tf~~aG~ytV~L~AsN~vs~~~-~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~G-S~Vtf~w~ 1902 (2740)
T TIGR00864      1829 GKHAC----MTFPDAGTFAIRLNASNAVSGKS-ASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAG-SAVNFRLQ 1902 (2740)
T ss_pred             cceeE----EecCCCeEEEEEEEEEcccCcce-eeeeEEEEEecceEEEecccccccCCCEEEEEEEecCC-CceEEEEE
Confidence            11111    15668899964  5778887653 44667776665 34555666677889999999988444 47889998


Q ss_pred             cCCCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCC
Q psy14896        605 RDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP  684 (813)
Q Consensus       605 k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~  684 (813)
                      .++....+.        ..+....+.-.+-.....+..|.|..+....   .+.+.|..+-  ..+.++...    ...+
T Consensus      1903 fGdgs~~~~--------t~~~t~~HsY~~~G~Y~VtV~A~N~Vs~~~a---~~~V~Vle~V--~gL~I~~~c----~~~~ 1965 (2740)
T TIGR00864      1903 IGGAAPEVL--------QPGPRFSHSFPRVDDHMVNLRAKNEVSCAQA---NLHIEVLEAV--RGLQIPDCC----AAGI 1965 (2740)
T ss_pred             eCCCCceee--------cCCCeEEeecCCCCcEEEEEEEEeccceeee---eEEEEEEEec--cceEecCCc----ccce
Confidence            764321111        1111111222222333445567888876433   2455555442  223222211    1125


Q ss_pred             CCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEE--EEEcCCCceEEEEEEEEEcCC
Q psy14896        685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYIC--RASNDRSALESSVTISIQAEP  762 (813)
Q Consensus       685 ~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C--~a~N~~G~~~~~~~l~V~~~P  762 (813)
                      ..|+..+|...+...-+..+.|+.+-..+..+..+...+...+..   ....|.|+.  +|.|.+|+...+..|.|+.+.
T Consensus      1966 ~~g~~~tF~A~v~~g~~V~f~W~f~~~~~~g~~~~~~~G~~vty~---~~~~G~~~I~v~A~N~l~s~n~t~~i~VQ~~i 2042 (2740)
T TIGR00864      1966 ATGEEKNFTANVQRGKPVAFAWTFDLHHLHGDSLVIHMGKDVSYT---AEAAGLLEIQLGAFNALGAENITLQLEAQDAL 2042 (2740)
T ss_pred             ecCceEEEEEEEecCCceEEEEEeeecccCCCcceeecCCceEEc---cCCCcEEEEEEEEEcccCcccccEEEEEEehe
Confidence            789999999999743345899997644443333221111122221   246888865  567999999888899999876


Q ss_pred             ccc-ccCCceeecCCCeEEEEEEEcccC-CceEEEEE-CCEeccc
Q psy14896        763 NFT-IPLTDKHMDNQADLTWTCEAFGVP-DVTYSWFR-NGELGHQ  804 (813)
Q Consensus       763 ~~~-~~~~~~~~~~g~~~~l~C~~~g~p-~~~v~W~k-~g~~l~~  804 (813)
                      ... ..........+..++|+|.+...+ ...+.|=+ ||.....
T Consensus      2043 ~~~~L~~~p~~~~~n~~v~f~~~~~~~~~~v~~~WDFGDGt~~~~ 2087 (2740)
T TIGR00864      2043 MDAALQAGPQDCFTNKMAQFEAATSPKPNFMACHWDFGDGSAGQD 2087 (2740)
T ss_pred             eeEEEeecCcceecCceEEEEEEEccCCCcEEEEEEecCCCCccc
Confidence            532 111223345578899999987645 47899955 5776544

Note: this model has been restricted to the amino half because for technical reasons.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.03  E-value=1e-09  Score=87.75  Aligned_cols=78  Identities=18%  Similarity=0.289  Sum_probs=54.0

Q ss_pred             cccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEE----eeCCeEEEcCCccccCCeeEEEEeecCce-ee
Q psy14896        209 LNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFT----LSGGNLIINDPRQVEDRGSYHCKASNKFG-SI  283 (813)
Q Consensus       209 g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g-~~  283 (813)
                      |++++|+|.+.|.|.+.+.|+++++.......      ...+..    ....+|.|.+. +.+|+|.|+|.|+|..+ ..
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~------~~~~~~~~~~~~~s~L~I~~~-~~~DsG~Y~C~a~n~~~~~~   73 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIP------EVEEVKVPATTLRSTLTFPHA-TVEDSGTYECAAHESTQDQK   73 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCce------EEEEEecCCcEEEEEEEECCC-CcCCCEEEEEEEEECccCcc
Confidence            68899999999999999999998864321110      000111    12346788775 99999999999998765 22


Q ss_pred             EeeeeEEeee
Q psy14896        284 ISESVQLAFG  293 (813)
Q Consensus       284 ~s~~~~l~v~  293 (813)
                      .+.++.|+|.
T Consensus        74 ~~~sv~i~V~   83 (84)
T cd05861          74 AFKKVNITVH   83 (84)
T ss_pred             eeEEEEEEEe
Confidence            3666777663

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=99.02  E-value=1.6e-09  Score=86.81  Aligned_cols=78  Identities=18%  Similarity=0.309  Sum_probs=66.6

Q ss_pred             cCCCCCCeEEEEEEecCCCCCe-EEEEeCCcccCCCce--ee-------ecceEEEECCCCCCCCEEEEEEEEcCCCceE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPS-YNWTRRGSPLPRNAY--FE-------NFNRILTIPNVKVEDQGEYICRASNDRSALE  751 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~-i~W~k~g~~l~~~~~--~~-------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~  751 (813)
                      +.|.+|+++.|.|.+++.|+|. +.|.+++..+.....  ..       ...+.|.|..++.+|+|.|+|.|.|+.+..+
T Consensus        13 ~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s   92 (101)
T cd05860          13 IFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASAS   92 (101)
T ss_pred             EEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeEE
Confidence            6789999999999999999997 999999887643321  11       1346899999999999999999999999999


Q ss_pred             EEEEEEEE
Q psy14896        752 SSVTISIQ  759 (813)
Q Consensus       752 ~~~~l~V~  759 (813)
                      .++.|.|+
T Consensus        93 ~tF~l~v~  100 (101)
T cd05860          93 VTFNVYVN  100 (101)
T ss_pred             EEEEEEEe
Confidence            99999886

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=99.01  E-value=8.6e-10  Score=85.11  Aligned_cols=75  Identities=17%  Similarity=0.220  Sum_probs=56.1

Q ss_pred             ceEEeCCCCCCCccEEEEccCCCCCcccCC---CeEEEeeCccEEEEeecccCCeeEEEEEEeeecCccccCceeeEE
Q psy14896        586 KAMFCDPPTNYPGVNYYWARDYFPNFVEED---KRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLK  660 (813)
Q Consensus       586 ~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~---~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~  660 (813)
                      +.|+|....+.|++.|+||||+.++.....   ..-.....++|.|.....+|.+.|+|+|.|.++..+.......|.
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~~~~~~~~~l~   79 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVSQKKQTQYSLD   79 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCCCCeeEEEEEe
Confidence            689999999999999999999987532211   111122345699999999999999999999998766554444444

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.01  E-value=2.1e-09  Score=88.75  Aligned_cols=75  Identities=19%  Similarity=0.345  Sum_probs=57.0

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcc---------cCCCceeee-----cceEEEECCCCCCCCEEEEEEEEcCC
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSP---------LPRNAYFEN-----FNRILTIPNVKVEDQGEYICRASNDR  747 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~---------l~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~N~~  747 (813)
                      ..+.+|++++|.|.+.+.|.+.+.|++.+..         +. +.++..     ....|+|.+++.+|+|.|+|.+.+..
T Consensus         7 ~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~   85 (95)
T cd05717           7 VTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALR-DNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMP   85 (95)
T ss_pred             EEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccc-cCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCC
Confidence            5688999999999999999999999863321         22 123321     24579999999999999999999875


Q ss_pred             CceEEEEEEEE
Q psy14896        748 SALESSVTISI  758 (813)
Q Consensus       748 G~~~~~~~l~V  758 (813)
                      . .++++.|+|
T Consensus        86 ~-~~~~~~~~v   95 (95)
T cd05717          86 V-QTAKATVTV   95 (95)
T ss_pred             C-ceEEEEEEC
Confidence            3 466666665

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>PF05473 Herpes_UL45: UL45 protein; InterPro: IPR008646 This family consists several UL45 proteins and homologues found in the herpes simplex virus family

Probab=98.98  E-value=1.1e-09  Score=101.42  Aligned_cols=102  Identities=28%  Similarity=0.379  Sum_probs=74.4

Q ss_pred             ccCCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeE
Q psy14896         25 LELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWV  104 (813)
Q Consensus        25 ~~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~  104 (813)
                      ....||.||..|+++||+|+....++|++|+..|++++++|+..++...+.++...+...  ...+|+-.          
T Consensus        81 ~~~~CP~~Wi~~~~~Cy~~~~~~~~t~~eA~~~C~~~~s~L~~~~~~~~L~~ll~~~~~~--~~~~~~~~----------  148 (200)
T PF05473_consen   81 GCGPCPKGWIGYNNSCYRFSNSPKKTWEEARNICAAYNSTLANVNNAKSLLELLDVLNNW--SGEYWWNF----------  148 (200)
T ss_pred             cCCCCCccceeeCCEEEEEeCCCCcCHHHHHHHHHhcCCcCCCchhHHHHHHHHHHhccc--CcCCccee----------
Confidence            567899999999999999999863399999999999999999999988887777765221  12234322          


Q ss_pred             EcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeecc
Q psy14896        105 NEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEASI  161 (813)
Q Consensus       105 W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~~  161 (813)
                                       ..+++...|..+....    ..+.+  |.....++|.+..
T Consensus       149 -----------------~~~d~~~~C~~~~~~~----~~~~d--C~~~~~~IC~~~r  182 (200)
T PF05473_consen  149 -----------------RNDDSIYNCIRPSDGV----SIIED--CSKTATVICYSPR  182 (200)
T ss_pred             -----------------ECCCchhheeeeccCc----ccccc--cCCcceEEEcCCC
Confidence                             0112246777765542    23334  9999999999964

The herpes simplex virus UL45 gene encodes an 18 kDa virion envelope protein whose function remains unknown. It has been suggested that the 18 kDa UL45 gene product is required for efficient growth in the central nervous system at low doses and may play an important role under the conditions of a naturally acquired infection []. The Equine herpesvirus 1 UL45 protein represents a type II membrane glycoprotein which has found to be non-essential for EHV-1 growth in vitro but deletion reduces the viruses' replication efficiency [].

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.97  E-value=1.5e-09  Score=87.65  Aligned_cols=69  Identities=26%  Similarity=0.417  Sum_probs=53.0

Q ss_pred             CCCCCCeEEEEEEecCCCCCeEEEEeCCcccC--------------CCcee-------eecceEEEECCCCCCCCEEEEE
Q psy14896        683 APKAGDKVRLECVAFGYPVPSYNWTRRGSPLP--------------RNAYF-------ENFNRILTIPNVKVEDQGEYIC  741 (813)
Q Consensus       683 ~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~--------------~~~~~-------~~~~~~L~i~~v~~~d~G~Y~C  741 (813)
                      .+.+|++|+|.|.+.+.|.+.|.|+++++...              ...++       ......|+|.+++.+|+|+|.|
T Consensus         3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C   82 (94)
T cd07690           3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYIC   82 (94)
T ss_pred             EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEE
Confidence            46789999999999999999999997763321              01111       1223569999999999999999


Q ss_pred             EEEcCCCceE
Q psy14896        742 RASNDRSALE  751 (813)
Q Consensus       742 ~a~N~~G~~~  751 (813)
                      .|.|..++.+
T Consensus        83 ~v~~~~~~~~   92 (94)
T cd07690          83 EVEDKKEEVE   92 (94)
T ss_pred             EECCccceEE
Confidence            9999877643

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.95  E-value=5.7e-09  Score=83.37  Aligned_cols=79  Identities=33%  Similarity=0.606  Sum_probs=58.5

Q ss_pred             CceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCC
Q psy14896        190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR  269 (813)
Q Consensus       190 P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~  269 (813)
                      |.+...+  ..+.+|     +++.|.|.+.++|.+.+.|++++..+..                ..+.+++.+ ++.+|+
T Consensus         2 P~l~~~~--~~v~~g-----~~~~l~C~~~~~p~~~~~w~~~~~~~~~----------------~~~~~~~~~-~~~~~~   57 (80)
T PF13895_consen    2 PVLSSSP--QSVEEG-----DSVTLTCSVSGNPPPQVQWYKNGSPINS----------------SQNGLFIPN-VSPEDS   57 (80)
T ss_dssp             -EEEEES--SEEETT-----SEEEEEEEEESSSSSEEEEEETTEEEEE----------------ESSEEEESS-EEGGGT
T ss_pred             cEEEccc--eEEeCC-----CcEEEEEEEEcccceeeeeeeeeeeeee----------------eeeeeeeee-eccccC
Confidence            5666555  335555     7799999999999999999999876521                111256655 589999


Q ss_pred             eeEEEEeecCceeeEeeeeEEee
Q psy14896        270 GSYHCKASNKFGSIISESVQLAF  292 (813)
Q Consensus       270 G~Y~C~a~n~~g~~~s~~~~l~v  292 (813)
                      |.|+|.|.+..+...+..+.|.|
T Consensus        58 g~y~C~~~~~~~~~~s~~~~v~V   80 (80)
T PF13895_consen   58 GNYTCRASNGSGSNTSTSVNVTV   80 (80)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEEEeCCCCeEeeeEEeeC
Confidence            99999999977766677777765

...

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.95  E-value=1.4e-09  Score=86.90  Aligned_cols=71  Identities=39%  Similarity=0.745  Sum_probs=58.9

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCC-ceEEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRS-ALESSVTISI  758 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G-~~~~~~~l~V  758 (813)
                      ..+.+|++++|.|.+.+.|.+.+.|++++..+..+      ...|.|.+++.+|+|.|+|.|.|..| ..+.++.|+|
T Consensus         9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~------~~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V   80 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSS------QNGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV   80 (80)
T ss_dssp             SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEE------SSEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeee------eeeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence            45788999999999999999999999998777632      22288899999999999999999654 5667777776

...

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=98.95  E-value=2.9e-09  Score=86.38  Aligned_cols=86  Identities=26%  Similarity=0.435  Sum_probs=59.2

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCC-eEEEeecccccccccccccccCCCccEEeeC--------CeEE
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPLSDKRFTLSG--------GNLI  259 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p-~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~--------~~l~  259 (813)
                      ||.| ...+...+.+|     ++++|.|.+.+.|.| .|.|..++..|.        .....+|.+..        .+|.
T Consensus         2 pP~i-~~~~s~~~~~G-----~~~~L~C~~~s~P~P~~i~W~w~~~~i~--------~~~~~r~~I~~~~~~~g~~S~L~   67 (98)
T cd05898           2 PPII-SSEQVQYAVRG-----ERGKVKCFIGSTPPPDRIAWAWKENVLE--------SGTSERYTVERTSTGSGVLSTLT   67 (98)
T ss_pred             CCEE-ecCceEEEeCC-----CcEEEEEEEccCCCCcEEEEEEcccccc--------CCCCCCEEEEEEccCCCcEEEEE
Confidence            4655 44455666566     779999999777887 689988887553        22334555431        2477


Q ss_pred             EcCCccccC-CeeEEEEeecCceeeEeeeeEE
Q psy14896        260 INDPRQVED-RGSYHCKASNKFGSIISESVQL  290 (813)
Q Consensus       260 i~~~~~~~d-~G~Y~C~a~n~~g~~~s~~~~l  290 (813)
                      |.+. ..+| .|.|.|.|.|.+|.. +..++|
T Consensus        68 I~~~-~~~d~~g~Y~C~a~N~~G~d-~~~i~L   97 (98)
T cd05898          68 INNI-MEADFQTHYNCTAWNSFGSG-TAIIQL   97 (98)
T ss_pred             ECCC-ccccCCcEEEEEEEeCCccc-eEEEEe
Confidence            7775 5555 899999999999987 444444

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=98.95  E-value=3.8e-09  Score=85.52  Aligned_cols=78  Identities=24%  Similarity=0.433  Sum_probs=54.2

Q ss_pred             ccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeee
Q psy14896        208 ILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISES  287 (813)
Q Consensus       208 ~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~  287 (813)
                      +|+.+.|.|.+.+.|.+.+.|+|++..+.......     ..........|.|.+. +.+|+|.|.|.|.|..|.. +.+
T Consensus         8 ~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~-----~~~~~~~~~~l~i~~~-~~~d~g~Y~C~~~n~~g~~-~~~   80 (85)
T cd05729           8 AGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIG-----GYKVRKKKWTLILESV-VPSDSGKYTCIVENKYGSI-NHT   80 (85)
T ss_pred             CCCcEEEEEEcCCCCCCeEEEEECCEECcccCcee-----EEEccCcEEEEEEeEC-CcccCEEEEEEEEECCceE-EEE
Confidence            34779999999999999999999997663211000     0000111235666664 8999999999999999986 556


Q ss_pred             eEEee
Q psy14896        288 VQLAF  292 (813)
Q Consensus       288 ~~l~v  292 (813)
                      +.|+|
T Consensus        81 ~~l~v   85 (85)
T cd05729          81 YKVDV   85 (85)
T ss_pred             EEEeC
Confidence            66653

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.92  E-value=5.2e-09  Score=84.05  Aligned_cols=77  Identities=18%  Similarity=0.331  Sum_probs=60.2

Q ss_pred             cCCCCCCeEEEEEEec-----------CCCCCeEEEEeCCcccCCC-------ceeeecceEEEECCCCCCCCEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAF-----------GYPVPSYNWTRRGSPLPRN-------AYFENFNRILTIPNVKVEDQGEYICRA  743 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~-----------g~P~p~i~W~k~g~~l~~~-------~~~~~~~~~L~i~~v~~~d~G~Y~C~a  743 (813)
                      ..+.+|+.+.|.|..-           ..+...++|||++..+...       .++...+..|.|.++..+|+|.|+|++
T Consensus        10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~   89 (104)
T cd05896          10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVL   89 (104)
T ss_pred             EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEE
Confidence            4568999999999861           1123489999998655442       256666789999999999999999999


Q ss_pred             EcCCCceEEEEEEEE
Q psy14896        744 SNDRSALESSVTISI  758 (813)
Q Consensus       744 ~N~~G~~~~~~~l~V  758 (813)
                      .|.-.-...++.|+|
T Consensus        90 rN~t~C~~~~i~l~V  104 (104)
T cd05896          90 RNSTYCMKVSMSLTV  104 (104)
T ss_pred             CCCCcceEEEEEEEC
Confidence            998777777777765

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.92  E-value=3.9e-09  Score=79.73  Aligned_cols=63  Identities=35%  Similarity=0.626  Sum_probs=49.1

Q ss_pred             ccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCce
Q psy14896        208 ILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFG  281 (813)
Q Consensus       208 ~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g  281 (813)
                      +|+++.|.|.+.+.|.+.+.|++++..+.          ........+..|.|.+. +.+|+|.|+|.+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~----------~~~~~~~~~~~L~i~~~-~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP----------ESNRLSASGSTLTIKSV-SLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECC----------CCCEEecCCcEEEEeeC-CcccCEEEEEEEecCCC
Confidence            46889999999888999999999997652          12222334567888775 89999999999998764

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.91  E-value=8.1e-09  Score=83.59  Aligned_cols=79  Identities=22%  Similarity=0.339  Sum_probs=55.3

Q ss_pred             ccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEee-cCceeeEee
Q psy14896        208 ILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKAS-NKFGSIISE  286 (813)
Q Consensus       208 ~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~-n~~g~~~s~  286 (813)
                      +|+++.|.|.. +.|.|.+.|||++.....    ......+.++...++.|.|.+. +.+|+|.|+|.|. |..+.. ..
T Consensus        10 eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~----~~~~~~~~r~~~~~~~L~I~~~-~~~DsG~Y~C~a~~~~~~~~-~~   82 (91)
T cd05871          10 ENNSTFLECLP-KSPQASVKWLFQRGGDQR----KEEVKTEERLIHTERGLLLRSL-QRSDAGVYTCTAVEHSFSQT-LA   82 (91)
T ss_pred             cCCcEEEEEEC-CCCCceEEEEEECCCCCc----cccccccccEEEecCeEEEeeC-ChhHCEEEEEEEEccCCeEE-EE
Confidence            45789999997 479999999995421110    0011234566677788998886 8999999999998 566655 34


Q ss_pred             eeEEeee
Q psy14896        287 SVQLAFG  293 (813)
Q Consensus       287 ~~~l~v~  293 (813)
                      .++|.|.
T Consensus        83 ~~~l~v~   89 (91)
T cd05871          83 KYTLHVI   89 (91)
T ss_pred             EEEEEEe
Confidence            6777663

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.91  E-value=3.2e-09  Score=80.37  Aligned_cols=57  Identities=35%  Similarity=0.657  Sum_probs=46.4

Q ss_pred             CCeEEEEEEe-cCCCCCeEEEEeCCcccCCCceeee--cc-e---EEEECCCCCCCCEEEEEEE
Q psy14896        687 GDKVRLECVA-FGYPVPSYNWTRRGSPLPRNAYFEN--FN-R---ILTIPNVKVEDQGEYICRA  743 (813)
Q Consensus       687 G~~v~l~C~~-~g~P~p~i~W~k~g~~l~~~~~~~~--~~-~---~L~i~~v~~~d~G~Y~C~a  743 (813)
                      |++++|.|.+ .+.|.+.+.|+|++..+........  .. .   +|.|.+++.+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            7899999999 7778889999999988766543321  11 1   3999999999999999987

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.87  E-value=6.4e-09  Score=81.61  Aligned_cols=76  Identities=21%  Similarity=0.296  Sum_probs=60.6

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCce--EEEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSAL--ESSVTISIQ  759 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~--~~~~~l~V~  759 (813)
                      ..+..|+++.|.|...+. .+.+.|+++|.+|..+.++.....-|.|..++.+|+|.|.|.|. +.|-.  -..+.|.|.
T Consensus         6 ~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~-E~gf~~~~~~y~l~v~   83 (85)
T cd05872           6 RTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSE-EEGFQQLVASYSLNVV   83 (85)
T ss_pred             EEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEe-cCCCeEEEEEEEEEEe
Confidence            567899999999999875 56999999999998776666556668899999999999999997 34544  445555543

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.87  E-value=1.1e-08  Score=83.67  Aligned_cols=87  Identities=20%  Similarity=0.271  Sum_probs=57.3

Q ss_pred             CCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe-----eCCeEEEcCCccccCCe
Q psy14896        196 PTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL-----SGGNLIINDPRQVEDRG  270 (813)
Q Consensus       196 p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~~d~G  270 (813)
                      ++++.+.+|     +++.|+|.+.+.|.+.|.||+.++.+.-.....  ...+.|+..     .+.+|.|.+. +.+|+|
T Consensus         4 ~~~v~v~eG-----~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~--~~~~~r~~~~~~~~~~~sL~I~~v-~~~DsG   75 (95)
T cd07701           4 TQNVTVVEG-----GTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKK--ALRDNRIELVRASWHELSISISDV-SLSDEG   75 (95)
T ss_pred             cceEEEecC-----CcEEEEEEEecCCceEEEEeCCCCeEEEEcCcc--cccCCCEEEEECCCCcEEEEECcC-CcccCE
Confidence            456777666     779999999999999999998654321100000  112344432     1346888885 899999


Q ss_pred             eEEEEeecCceeeEeeeeEEee
Q psy14896        271 SYHCKASNKFGSIISESVQLAF  292 (813)
Q Consensus       271 ~Y~C~a~n~~g~~~s~~~~l~v  292 (813)
                      .|+|.+.+..+.  +..+.|.|
T Consensus        76 ~Y~C~~~t~~~~--~~~~~l~v   95 (95)
T cd07701          76 QYTCSLFTMPVK--TSKAYLTV   95 (95)
T ss_pred             EEEEEeEeecCc--cEEEEEEC
Confidence            999999975333  44555543

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>smart00409 IG Immunoglobulin

Probab=98.86  E-value=1.6e-08  Score=82.00  Aligned_cols=77  Identities=35%  Similarity=0.632  Sum_probs=63.6

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeC-CcccCCCcee--eec--ceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRR-GSPLPRNAYF--ENF--NRILTIPNVKVEDQGEYICRASNDRSALESSVTI  756 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~-g~~l~~~~~~--~~~--~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l  756 (813)
                      ..+..|+++.|.|.+.+.+.+.+.|+++ +..+....++  ...  ...|.|.++..+|+|.|.|.+.|..|.....+.|
T Consensus         4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l   83 (86)
T smart00409        4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTL   83 (86)
T ss_pred             EEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEE
Confidence            4567899999999999988889999998 8777533322  111  3689999999999999999999999988888888


Q ss_pred             EE
Q psy14896        757 SI  758 (813)
Q Consensus       757 ~V  758 (813)
                      .|
T Consensus        84 ~V   85 (86)
T smart00409       84 TV   85 (86)
T ss_pred             EE
Confidence            76

>smart00410 IG_like Immunoglobulin like

Probab=98.86  E-value=1.6e-08  Score=82.00  Aligned_cols=77  Identities=35%  Similarity=0.632  Sum_probs=63.6

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeC-CcccCCCcee--eec--ceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRR-GSPLPRNAYF--ENF--NRILTIPNVKVEDQGEYICRASNDRSALESSVTI  756 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~-g~~l~~~~~~--~~~--~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l  756 (813)
                      ..+..|+++.|.|.+.+.+.+.+.|+++ +..+....++  ...  ...|.|.++..+|+|.|.|.+.|..|.....+.|
T Consensus         4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l   83 (86)
T smart00410        4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTL   83 (86)
T ss_pred             EEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEE
Confidence            4567899999999999988889999998 8777533322  111  3689999999999999999999999988888888


Q ss_pred             EE
Q psy14896        757 SI  758 (813)
Q Consensus       757 ~V  758 (813)
                      .|
T Consensus        84 ~V   85 (86)
T smart00410       84 TV   85 (86)
T ss_pred             EE
Confidence            76

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.80  E-value=2.5e-08  Score=79.97  Aligned_cols=81  Identities=19%  Similarity=0.200  Sum_probs=52.6

Q ss_pred             cccEEEEeeeccCC--CCeEEEeeccccccccccccc-ccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEe
Q psy14896        209 LNDITLSCYAGGYP--NPSYEWFKEDYVQDRLVANLI-DPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIIS  285 (813)
Q Consensus       209 g~~v~l~C~~~g~P--~p~v~W~k~g~~l~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s  285 (813)
                      |+++.|.|.+.+.|  ...+.|.++++.+........ ..... .......+|.|.+. +.+|+|.|+|.|+|..|.. .
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~-~~~~~~s~L~I~~~-~~~DsG~Y~C~a~n~~~~~-~   77 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQ-EHTELSSTLTIENV-TLSDLGRYTCTASSGQMIA-K   77 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceeccccccccc-ccceeeeEEEEecC-CcccCEEEEEEEeecceEe-c
Confidence            58899999998755  458899998865422110000 00000 00112456888885 8999999999999998876 5


Q ss_pred             eeeEEee
Q psy14896        286 ESVQLAF  292 (813)
Q Consensus       286 ~~~~l~v  292 (813)
                      ..+.|.|
T Consensus        78 ~~t~~~V   84 (86)
T cd05862          78 NSTIVIV   84 (86)
T ss_pred             ccEEEEE
Confidence            5566665

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.79  E-value=1.2e-08  Score=82.23  Aligned_cols=72  Identities=18%  Similarity=0.291  Sum_probs=53.2

Q ss_pred             CceeccCCCceEEeCCCC----CCCccEEEEccCCCCCcccCCCeEEE-eeCccEEEEeecccCCeeEEEEEEeeecC
Q psy14896        577 PEIGNQNWGKAMFCDPPT----NYPGVNYYWARDYFPNFVEEDKRVFV-SYDGALYFSALEQIDAGNYSCNVQSKVSD  649 (813)
Q Consensus       577 ~~~~~~g~~~~l~C~~~~----~~p~~~v~W~k~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  649 (813)
                      ++.+.++....|.|.-..    ..+.+.|+||||+.++.. ...++.. ..+..|.|.++..+|+|.|+|+|.|..|.
T Consensus         4 ~~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~-~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g   80 (95)
T cd05897           4 PQILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDK-DNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEG   80 (95)
T ss_pred             eeEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcC-CCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCC
Confidence            355677889999997322    346789999999986432 2233333 23456999999999999999999998764

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.79  E-value=2.3e-08  Score=79.87  Aligned_cols=70  Identities=29%  Similarity=0.457  Sum_probs=52.0

Q ss_pred             eEEEEEEecC-CCCCeEEEEeCCcccCCCcee----e-----ecceEEEECCCCCCCCEEEEEEEEcCCCc--eEEEEEE
Q psy14896        689 KVRLECVAFG-YPVPSYNWTRRGSPLPRNAYF----E-----NFNRILTIPNVKVEDQGEYICRASNDRSA--LESSVTI  756 (813)
Q Consensus       689 ~v~l~C~~~g-~P~p~i~W~k~g~~l~~~~~~----~-----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~--~~~~~~l  756 (813)
                      .+.|.|.+.| .|.|.|+|+|+|++|......    .     ...+.|.|.....+|.|.|+|+|.|..-.  .+++++|
T Consensus         1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l   80 (82)
T cd05759           1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTL   80 (82)
T ss_pred             CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence            3689999987 688999999999988644211    1     11246889888888999999999998643  4556655


Q ss_pred             EE
Q psy14896        757 SI  758 (813)
Q Consensus       757 ~V  758 (813)
                      .|
T Consensus        81 ~v   82 (82)
T cd05759          81 DV   82 (82)
T ss_pred             cC
Confidence            43

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.76  E-value=2.1e-08  Score=80.95  Aligned_cols=75  Identities=17%  Similarity=0.257  Sum_probs=48.9

Q ss_pred             ccccEEEEeeeccCCCCeEEEeeccccccccccccc----ccCCCccEEe-----eC--CeEEEcCCccccCCeeEEEEe
Q psy14896        208 ILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLI----DPLSDKRFTL-----SG--GNLIINDPRQVEDRGSYHCKA  276 (813)
Q Consensus       208 ~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~----~~~~~~~~~~-----~~--~~l~i~~~~~~~d~G~Y~C~a  276 (813)
                      +|++|+|.|.+++.|.+.|.||++++.........+    ......++..     .+  -+|.|.+. +.+|+|.|+|.|
T Consensus         6 ~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l-~~sDsgtY~C~v   84 (94)
T cd07690           6 KGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNL-KIEDSDTYICEV   84 (94)
T ss_pred             CCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCC-CHHHCEEEEEEE
Confidence            468899999999989999999988743211000000    0011112111     12  24888886 899999999999


Q ss_pred             ecCceee
Q psy14896        277 SNKFGSI  283 (813)
Q Consensus       277 ~n~~g~~  283 (813)
                      .|..+++
T Consensus        85 ~~~~~~~   91 (94)
T cd07690          85 EDKKEEV   91 (94)
T ss_pred             CCccceE
Confidence            9987653

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.73  E-value=3.8e-08  Score=74.39  Aligned_cols=63  Identities=24%  Similarity=0.350  Sum_probs=42.0

Q ss_pred             cccEEEEeee-ccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEe
Q psy14896        209 LNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKA  276 (813)
Q Consensus       209 g~~v~l~C~~-~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a  276 (813)
                      |++++|.|.+ .+.|.+.+.|+|+++.+................    ..|.|.+. +.+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~----~~L~i~~v-~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSST----SRLTISNV-TPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEE----EEEEESSC-TGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceee----eEEEEccC-CHHHCEEEEEEC
Confidence            6889999999 777888999999997653221111100000000    02777775 899999999987

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.71  E-value=7.2e-08  Score=77.58  Aligned_cols=70  Identities=16%  Similarity=0.272  Sum_probs=49.8

Q ss_pred             ccccEEEEeee-c----------cCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEe
Q psy14896        208 ILNDITLSCYA-G----------GYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKA  276 (813)
Q Consensus       208 ~g~~v~l~C~~-~----------g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a  276 (813)
                      +||.+.|.|.. .          ..+...+.|||++..+.....  +. ..+.|+...+..|.|..+ ..+|+|.|+|++
T Consensus        14 ~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~--~~-~~~~Ri~~~~~~Lwf~Pa-~~eDSG~Y~C~~   89 (104)
T cd05896          14 AGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIE--II-FDGVRMSKEEDSIWFRPA-ELQDSGLYTCVL   89 (104)
T ss_pred             CCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCc--cc-ccceeEEEeCCEEEEEeC-ChhhCeEEEEEE
Confidence            34889999996 1          113348999999865432211  00 112477778889999986 899999999999


Q ss_pred             ecCce
Q psy14896        277 SNKFG  281 (813)
Q Consensus       277 ~n~~g  281 (813)
                      +|...
T Consensus        90 rN~t~   94 (104)
T cd05896          90 RNSTY   94 (104)
T ss_pred             CCCCc
Confidence            99865

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.69  E-value=1.7e-07  Score=75.69  Aligned_cols=65  Identities=14%  Similarity=0.274  Sum_probs=50.2

Q ss_pred             CcCCCCCCeEEEEEEecCCCCCeEEEEeCCccc--------CCCceee-----ecceEEEECCCCCCCCEEEEEEEEc
Q psy14896        681 PEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPL--------PRNAYFE-----NFNRILTIPNVKVEDQGEYICRASN  745 (813)
Q Consensus       681 ~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l--------~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~N  745 (813)
                      ++.+.+|++++|+|.+.+.....+.|++.+..+        ..+.++.     ....+|+|.+++.+|+|.|.|.+..
T Consensus         6 nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t   83 (95)
T cd05881           6 DVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT   83 (95)
T ss_pred             ceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence            367899999999999998877778888766432        2333332     2345799999999999999999975

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.67  E-value=1.6e-07  Score=77.51  Aligned_cols=86  Identities=20%  Similarity=0.290  Sum_probs=55.4

Q ss_pred             CceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe-----eCCeEEEcCCccccCCee
Q psy14896        197 TDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL-----SGGNLIINDPRQVEDRGS  271 (813)
Q Consensus       197 ~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~~d~G~  271 (813)
                      +++.+.+|     ++++|.|.+.+.|.+.+.|++.+..+.-...  .....+.++..     .+.+|.|.+. +.+|+|.
T Consensus         5 ~~~~v~~G-----~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~L~I~~v-~~~DsG~   76 (95)
T cd05717           5 QDVTVVEG-----GTATLKCRVKNNDNSSLQWSNPNQQTLYFND--KRALRDNRIQLVNFSANELSISISNV-SLSDEGR   76 (95)
T ss_pred             CcEEEcCC-----CCEEEEEEECCCCCceEEEeCCCCcEEEecc--ccccccCcEEEEcCCCCeeEEEEccC-CcccCEE
Confidence            45666666     7799999999888999999976543211000  00112345544     1346788775 9999999


Q ss_pred             EEEEeecCceeeEeeeeEEee
Q psy14896        272 YHCKASNKFGSIISESVQLAF  292 (813)
Q Consensus       272 Y~C~a~n~~g~~~s~~~~l~v  292 (813)
                      |+|.+.+....  +..+.|+|
T Consensus        77 Y~C~~~~~~~~--~~~~~~~v   95 (95)
T cd05717          77 YTCSLYTMPVQ--TAKATVTV   95 (95)
T ss_pred             EEEEEecCCCc--eEEEEEEC
Confidence            99999976532  34455543

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.63  E-value=1.5e-07  Score=76.56  Aligned_cols=76  Identities=21%  Similarity=0.299  Sum_probs=56.0

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCc-eeeecceEEEECCCCCCCCEEEEEEEEcCC-Cc--eEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-YFENFNRILTIPNVKVEDQGEYICRASNDR-SA--LESSVTIS  757 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~-G~--~~~~~~l~  757 (813)
                      ..|..|++|+|.|... .|...+.|+|+|....... ........|.|.+++.+|+|.|+|.+.|.. +.  .+..+.|.
T Consensus        11 ~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~~~~~S~~Sd~lel~   89 (91)
T cd05751          11 SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSGVALWSEPSDPLELV   89 (91)
T ss_pred             CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECCCCccCCCCCcEEEE
Confidence            4678999999999885 6677999999998654221 122335679999999999999999999862 21  23335555


Q ss_pred             E
Q psy14896        758 I  758 (813)
Q Consensus       758 V  758 (813)
                      |
T Consensus        90 V   90 (91)
T cd05751          90 V   90 (91)
T ss_pred             e
Confidence            4

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>PHA03376 BARF1; Provisional

Probab=98.62  E-value=3.8e-07  Score=79.95  Aligned_cols=108  Identities=21%  Similarity=0.381  Sum_probs=72.2

Q ss_pred             cCCCCCCeEEEEEEec---CCCCCeEEEEeCCc----cc-C-----------CCc-eee----ecceEEEECCCCCCCCE
Q psy14896        682 EAPKAGDKVRLECVAF---GYPVPSYNWTRRGS----PL-P-----------RNA-YFE----NFNRILTIPNVKVEDQG  737 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~---g~P~p~i~W~k~g~----~l-~-----------~~~-~~~----~~~~~L~i~~v~~~d~G  737 (813)
                      +.+..|+.+.|+|...   ..+...|.|+|.+.    .+ .           +.+ +++    .++-+|.|.+++.+|.|
T Consensus        21 Vta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdG  100 (221)
T PHA03376         21 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG  100 (221)
T ss_pred             hhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCc
Confidence            5678999999999875   22445899999532    11 0           000 111    23457999999999999


Q ss_pred             EEEEEEEcCCCceEE-----EEE---EEEEcC-CcccccCCceeecCCCeEEEEEEEcccCCceEEEEEC
Q psy14896        738 EYICRASNDRSALES-----SVT---ISIQAE-PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRN  798 (813)
Q Consensus       738 ~Y~C~a~N~~G~~~~-----~~~---l~V~~~-P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~  798 (813)
                      .|+|...-.......     ++.   |.|+.. -.|+.         -+...+.|.+-|.|.|.++|..|
T Consensus       101 tY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~dFp~---------~~~~~i~C~sggfP~P~~~Wle~  161 (221)
T PHA03376        101 NYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPD---------FSVLTVTCTVNAFPHPHVQWLMP  161 (221)
T ss_pred             eEEEEEEcCCCceeeeeeeeeeecceEEEEeccccCCC---------CCeeEEEEecCCcCCchheeccc
Confidence            999999865433322     222   555431 12221         45668999988999999999865

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.62  E-value=1.4e-07  Score=75.28  Aligned_cols=78  Identities=22%  Similarity=0.302  Sum_probs=46.9

Q ss_pred             EEEEeeecc-CCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceee-EeeeeE
Q psy14896        212 ITLSCYAGG-YPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI-ISESVQ  289 (813)
Q Consensus       212 v~l~C~~~g-~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~-~s~~~~  289 (813)
                      +.|+|.+.| .|.+.|.|||+|+.+............+ ........|.+... ..+|.|.|+|+|.|..... ...+++
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~-~~~~~~s~L~i~~~-~~~~~~~y~C~a~n~~l~~~~~~s~~   79 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDG-KRETTVSTLPITPS-DHDTGRTFTCRARNEALPTGKETSVT   79 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCC-CeEEEEEEEEEeCc-eecCCCEEEEEEcCccCCCCcEEEEE
Confidence            789999986 7999999999998764321111000111 11111234555543 6778889999999865432 234444


Q ss_pred             Ee
Q psy14896        290 LA  291 (813)
Q Consensus       290 l~  291 (813)
                      |.
T Consensus        80 l~   81 (82)
T cd05759          80 LD   81 (82)
T ss_pred             Ec
Confidence            44

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.61  E-value=2.3e-07  Score=72.90  Aligned_cols=63  Identities=17%  Similarity=0.301  Sum_probs=49.5

Q ss_pred             ceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEee
Q psy14896        198 DVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKAS  277 (813)
Q Consensus       198 ~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~  277 (813)
                      .+.+..|     +++.|.|...+ +.+.+.|++||..+          ..+.++......|+|... +.+|+|.|.|.+.
T Consensus         5 ~~tv~~g-----~~v~L~C~~~s-~~A~v~W~~ng~~l----------~~~~r~~~~~~GLlI~~~-~~~dsG~Y~C~s~   67 (85)
T cd05872           5 NRTVAPG-----ADVVLPCQLRS-NLASPVWLFNGTPL----------NAQFSYRVGTDGLLILVT-SPEHSGTYRCYSE   67 (85)
T ss_pred             EEEEecC-----CCEEEECCCCC-CCccEEEEECCccc----------CCCcceEEeCCCCEEEEC-CHhhCEEEEEEEe
Confidence            3555555     77999999988 57799999999865          234566666666888885 8999999999998

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.58  E-value=3.7e-07  Score=77.06  Aligned_cols=75  Identities=21%  Similarity=0.431  Sum_probs=57.1

Q ss_pred             CCCeEEEEEEecCCC------CCeEEEEeCC---cc---c--CCCc----------ee-----eecceEEEECCCCCCCC
Q psy14896        686 AGDKVRLECVAFGYP------VPSYNWTRRG---SP---L--PRNA----------YF-----ENFNRILTIPNVKVEDQ  736 (813)
Q Consensus       686 ~G~~v~l~C~~~g~P------~p~i~W~k~g---~~---l--~~~~----------~~-----~~~~~~L~i~~v~~~d~  736 (813)
                      .|++|+|.|.....|      .+.|.|+|..   ..   +  ..+.          +.     ...+.+|+|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            489999999998654      4699999973   11   1  0110          11     12356799999999999


Q ss_pred             EEEEEEEEcCCCceEEEEEEEEEc
Q psy14896        737 GEYICRASNDRSALESSVTISIQA  760 (813)
Q Consensus       737 G~Y~C~a~N~~G~~~~~~~l~V~~  760 (813)
                      |.|.|.+.|..+..+..+.|.|.+
T Consensus        81 G~Y~C~v~~~~~~~~~~v~L~V~~  104 (106)
T cd05714          81 GRYRCEVIDGIEDEQDTVELEVRG  104 (106)
T ss_pred             EEEEEEEEcCCCceEEEEEEEEEE
Confidence            999999999988889999999975

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.54  E-value=6e-07  Score=75.84  Aligned_cols=75  Identities=23%  Similarity=0.397  Sum_probs=56.4

Q ss_pred             CCCeEEEEEEecCCC------CCeEEEEeCCc---c----c-CC----------Cceee-----ecceEEEECCCCCCCC
Q psy14896        686 AGDKVRLECVAFGYP------VPSYNWTRRGS---P----L-PR----------NAYFE-----NFNRILTIPNVKVEDQ  736 (813)
Q Consensus       686 ~G~~v~l~C~~~g~P------~p~i~W~k~g~---~----l-~~----------~~~~~-----~~~~~L~i~~v~~~d~  736 (813)
                      .|++|+|.|.+...|      ...|.|+|...   +    + ..          ..++.     ....+|.|.+++.+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            489999999987653      34799999641   1    0 00          01111     1245799999999999


Q ss_pred             EEEEEEEEcCCCceEEEEEEEEEc
Q psy14896        737 GEYICRASNDRSALESSVTISIQA  760 (813)
Q Consensus       737 G~Y~C~a~N~~G~~~~~~~l~V~~  760 (813)
                      |.|.|.+.|..|..+..+.|.|.+
T Consensus        81 G~Y~C~v~~~~~~~~~~~~l~v~~  104 (106)
T cd05877          81 GRYRCEVIDGLEDESVVVALRLRG  104 (106)
T ss_pred             EEEEEEEEecccceEEEEEEEEEE
Confidence            999999999999999999999864

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.54  E-value=5.8e-07  Score=72.23  Aligned_cols=84  Identities=17%  Similarity=0.304  Sum_probs=57.3

Q ss_pred             eeecCCCccccccEEEEeeeccCCCCe-EEEeecccccccccccccccC--CCccEEeeCCeEEEcCCccccCCeeEEEE
Q psy14896        199 VVFDLSKRSILNDITLSCYAGGYPNPS-YEWFKEDYVQDRLVANLIDPL--SDKRFTLSGGNLIINDPRQVEDRGSYHCK  275 (813)
Q Consensus       199 ~~v~~g~~~~g~~v~l~C~~~g~P~p~-v~W~k~g~~l~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~  275 (813)
                      +.|.+|     +.+.|.|.+.+.|.|+ +.|.+++..+.......+...  ...+|   ...|.+... +.+|+|.|+|.
T Consensus        13 ~~v~~g-----E~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY---~S~L~L~Rl-k~~E~G~YTf~   83 (101)
T cd05860          13 IFVNAG-----ENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRY---VSELHLTRL-KGTEGGTYTFL   83 (101)
T ss_pred             EEEECC-----CCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEE---EEEEEEeec-ChhhCcEEEEE
Confidence            445555     7799999999999997 999999986543221111000  00111   135777775 89999999999


Q ss_pred             eecCceeeEeeeeEEee
Q psy14896        276 ASNKFGSIISESVQLAF  292 (813)
Q Consensus       276 a~n~~g~~~s~~~~l~v  292 (813)
                      |.|..+.+ +.++.|.|
T Consensus        84 a~N~~~~~-s~tF~l~v   99 (101)
T cd05860          84 VSNSDASA-SVTFNVYV   99 (101)
T ss_pred             EECCCCeE-EEEEEEEE
Confidence            99998876 55565554

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.53  E-value=2.8e-07  Score=74.97  Aligned_cols=87  Identities=21%  Similarity=0.336  Sum_probs=57.1

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccC
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED  268 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d  268 (813)
                      +|.|...|.. +|..|     ++|+|.|... .|...+.|||+|.....         .........+.+.|.+ ++.+|
T Consensus         2 kP~L~a~p~~-vV~~G-----~~VtL~C~~~-~~~~~f~l~k~g~~~~~---------~~~~~~~~~~~f~i~~-v~~~~   64 (91)
T cd05751           2 KPSLWAEPSS-VVPLG-----KPVTLRCQGP-YGAVEYRLYREGSTFAV---------KKPPEPQNKAKFFIPS-MKREH   64 (91)
T ss_pred             CCEEEecCCC-ccCCC-----CcEEEEEecC-CCCCEEEEEECCCCccc---------cccCCCceeEEEEccC-CChhH
Confidence            3667777753 55566     6699999986 47889999999974310         0000111234566666 58999


Q ss_pred             CeeEEEEeecCc-e-eeEeeeeEEee
Q psy14896        269 RGSYHCKASNKF-G-SIISESVQLAF  292 (813)
Q Consensus       269 ~G~Y~C~a~n~~-g-~~~s~~~~l~v  292 (813)
                      +|.|+|.+.+.. + +..|..+.|.|
T Consensus        65 ~G~Y~C~~~~~~~~~S~~Sd~lel~V   90 (91)
T cd05751          65 AGRYRCYYRSGVALWSEPSDPLELVV   90 (91)
T ss_pred             CEEEEEEEECCCCccCCCCCcEEEEe
Confidence            999999999862 2 33455566665

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.53  E-value=6.4e-07  Score=74.14  Aligned_cols=77  Identities=19%  Similarity=0.253  Sum_probs=53.6

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCC--------C-----------cee-eecceEEEECCCCCCCCEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPR--------N-----------AYF-ENFNRILTIPNVKVEDQGEYIC  741 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~--------~-----------~~~-~~~~~~L~i~~v~~~d~G~Y~C  741 (813)
                      ..+.+|+++.|.|.....+...++|||.......        .           .+. -..+++|.|.+++.+|+|.|+|
T Consensus         8 ~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~~   87 (105)
T cd05774           8 PQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYTL   87 (105)
T ss_pred             CcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEEE
Confidence            5678999999999654333349999996322110        0           011 1225689999999999999999


Q ss_pred             EEEcCC-CceEEEEEEEE
Q psy14896        742 RASNDR-SALESSVTISI  758 (813)
Q Consensus       742 ~a~N~~-G~~~~~~~l~V  758 (813)
                      .+.|.. ...+..+.|.|
T Consensus        88 ~v~~~~~~~~~~~v~l~V  105 (105)
T cd05774          88 QTITTNFQVEQATVHLQV  105 (105)
T ss_pred             EEEeCCccEEEEEEEEEC
Confidence            999986 45566666654

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.53  E-value=6.7e-07  Score=75.04  Aligned_cols=75  Identities=17%  Similarity=0.309  Sum_probs=56.0

Q ss_pred             CCCeEEEEEEecCCC------------CCeEEEEeC--Ccc---cC-C------C----cee-------eecceEEEECC
Q psy14896        686 AGDKVRLECVAFGYP------------VPSYNWTRR--GSP---LP-R------N----AYF-------ENFNRILTIPN  730 (813)
Q Consensus       686 ~G~~v~l~C~~~g~P------------~p~i~W~k~--g~~---l~-~------~----~~~-------~~~~~~L~i~~  730 (813)
                      .|++|+|.|.....+            .+.|.|+|-  |..   +. .      .    .++       ...+.+|+|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            489999999997432            369999984  211   10 0      0    111       12467899999


Q ss_pred             CCCCCCEEEEEEEEcCCCceEEEEEEEEEc
Q psy14896        731 VKVEDQGEYICRASNDRSALESSVTISIQA  760 (813)
Q Consensus       731 v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  760 (813)
                      ++.+|+|.|.|.+.+.....+..+.|.|.+
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g  110 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVKG  110 (112)
T ss_pred             cccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence            999999999999999888888888888875

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.52  E-value=6.8e-07  Score=73.99  Aligned_cols=83  Identities=19%  Similarity=0.256  Sum_probs=51.9

Q ss_pred             ccccEEEEeeeccCCCCeEEEeeccccc-----cccc----ccccccCCCccEEe-eCCeEEEcCCccccCCeeEEEEee
Q psy14896        208 ILNDITLSCYAGGYPNPSYEWFKEDYVQ-----DRLV----ANLIDPLSDKRFTL-SGGNLIINDPRQVEDRGSYHCKAS  277 (813)
Q Consensus       208 ~g~~v~l~C~~~g~P~p~v~W~k~g~~l-----~~~~----~~~~~~~~~~~~~~-~~~~l~i~~~~~~~d~G~Y~C~a~  277 (813)
                      +|++|.|.|.-.-.+...+.|||.....     ..-.    .....+....|..+ .+|+|+|.+. +.+|+|.|+|.+.
T Consensus        12 ~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v-~~~D~G~Y~~~v~   90 (105)
T cd05774          12 EGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNV-TQKDTGFYTLQTI   90 (105)
T ss_pred             CCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecC-CcccCEEEEEEEE
Confidence            3478999987533334499999964211     1000    00111223345444 4899999996 8999999999999


Q ss_pred             cCceeeEeeeeEEe
Q psy14896        278 NKFGSIISESVQLA  291 (813)
Q Consensus       278 n~~g~~~s~~~~l~  291 (813)
                      +.........+.|.
T Consensus        91 ~~~~~~~~~~v~l~  104 (105)
T cd05774          91 TTNFQVEQATVHLQ  104 (105)
T ss_pred             eCCccEEEEEEEEE
Confidence            87754434455554

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.52  E-value=4.9e-07  Score=70.09  Aligned_cols=79  Identities=16%  Similarity=0.227  Sum_probs=50.5

Q ss_pred             EEEEeeec-cCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeeeeEE
Q psy14896        212 ITLSCYAG-GYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL  290 (813)
Q Consensus       212 v~l~C~~~-g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l  290 (813)
                      +.|.|.+. ++|.+.|+|||++.++...... . ......+ ....+|.+... ..+|...|+|+|.|..-........|
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~-~-~~~~~~~-t~~S~L~~~p~-~eDdG~~~~C~a~~~~l~~~~~~~~L   77 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTV-E-ETWSRMF-TVTSQLMLKVT-KEDDGVPVICLVDHPAVKDLQTQRYL   77 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccc-e-eccCCCc-EEEEEEEEECc-hhhCCCEEEEEEcCcccCCceeeEEE
Confidence            78999996 5899999999999988532110 0 0111111 11234555543 46666689999999765445667777


Q ss_pred             eeee
Q psy14896        291 AFGF  294 (813)
Q Consensus       291 ~v~~  294 (813)
                      .|.|
T Consensus        78 ~V~y   81 (82)
T cd05883          78 EVQY   81 (82)
T ss_pred             EEEE
Confidence            7765

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.51  E-value=5.6e-07  Score=73.85  Aligned_cols=83  Identities=19%  Similarity=0.241  Sum_probs=57.3

Q ss_pred             cccEEEEeeeccCCCCeEEEeeccccccccc--------ccccccCCCccEEe-eCCeEEEcCCccccCCeeEEEEeecC
Q psy14896        209 LNDITLSCYAGGYPNPSYEWFKEDYVQDRLV--------ANLIDPLSDKRFTL-SGGNLIINDPRQVEDRGSYHCKASNK  279 (813)
Q Consensus       209 g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~--------~~~~~~~~~~~~~~-~~~~l~i~~~~~~~d~G~Y~C~a~n~  279 (813)
                      |++|+|.|.....+...|.|+|+........        ..........|..+ .+++|.|.+. +.+|+|.|+|.+...
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l-~~~DsG~Y~c~v~~~   79 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNL-TKEDSGTYTLQIIST   79 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccC-CchhcEEEEEEEEcC
Confidence            6889999998766667999999875432111        01111223344444 4788999996 899999999999988


Q ss_pred             ceeeEeeeeEEee
Q psy14896        280 FGSIISESVQLAF  292 (813)
Q Consensus       280 ~g~~~s~~~~l~v  292 (813)
                      .|......+.|.|
T Consensus        80 ~~~~~~~~~~l~v   92 (92)
T cd05741          80 NGVTENAKFFLRV   92 (92)
T ss_pred             CCcEEEEEEEEEC
Confidence            7765555665543

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.50  E-value=7.9e-07  Score=74.21  Aligned_cols=72  Identities=24%  Similarity=0.279  Sum_probs=51.4

Q ss_pred             CCeEEEEEEecCCCC---CeEEEEeCCc-----------ccCC--C----ceee-------ecceEEEECCCCCCCCEEE
Q psy14896        687 GDKVRLECVAFGYPV---PSYNWTRRGS-----------PLPR--N----AYFE-------NFNRILTIPNVKVEDQGEY  739 (813)
Q Consensus       687 G~~v~l~C~~~g~P~---p~i~W~k~g~-----------~l~~--~----~~~~-------~~~~~L~i~~v~~~d~G~Y  739 (813)
                      |++|+|.|.......   ..|.|+|...           ....  .    .++.       ....+|+|.+++.+|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            789999999863221   3688887542           1110  0    1211       1235799999999999999


Q ss_pred             EEEEEcCCCceEEEEEEEE
Q psy14896        740 ICRASNDRSALESSVTISI  758 (813)
Q Consensus       740 ~C~a~N~~G~~~~~~~l~V  758 (813)
                      +|.+.|..+..+..+.|.|
T Consensus        81 ~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          81 TCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEecCCcEEEEEEEEEE
Confidence            9999998888888888877

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.50  E-value=9.2e-07  Score=68.58  Aligned_cols=71  Identities=18%  Similarity=0.340  Sum_probs=52.6

Q ss_pred             EEEEEEec-CCCCCeEEEEeCCcccCCCcee-------eecceEEEECCCCCCCCEEEEEEEEcCCC-ceEEEEEEEEEc
Q psy14896        690 VRLECVAF-GYPVPSYNWTRRGSPLPRNAYF-------ENFNRILTIPNVKVEDQGEYICRASNDRS-ALESSVTISIQA  760 (813)
Q Consensus       690 v~l~C~~~-g~P~p~i~W~k~g~~l~~~~~~-------~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G-~~~~~~~l~V~~  760 (813)
                      ++|.|.+. +.|.+.|+|||+|.++......       ....++|.|..-..+|...|+|+|.|..= ..+.+..|.|..
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~y   81 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQY   81 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEEE
Confidence            68999998 5788899999999998764321       11235688866666777799999999742 356677777764

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>smart00409 IG Immunoglobulin

Probab=98.45  E-value=1.2e-06  Score=70.67  Aligned_cols=72  Identities=35%  Similarity=0.630  Sum_probs=52.3

Q ss_pred             cccEEEEeeeccCCCCeEEEeec-ccccccccccccccCCCccEEee----CCeEEEcCCccccCCeeEEEEeecCceee
Q psy14896        209 LNDITLSCYAGGYPNPSYEWFKE-DYVQDRLVANLIDPLSDKRFTLS----GGNLIINDPRQVEDRGSYHCKASNKFGSI  283 (813)
Q Consensus       209 g~~v~l~C~~~g~P~p~v~W~k~-g~~l~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~  283 (813)
                      |+++.|.|.+.+.+.+.+.|+++ +..+.          ...++...    ..+|.|.+. +.+|+|.|+|.+.+..+..
T Consensus         9 g~~~~l~C~~~~~~~~~~~W~~~~~~~v~----------~~~~~~~~~~~~~~~l~i~~~-~~~d~G~Y~C~v~~~~~~~   77 (86)
T smart00409        9 GESVTLSCEVSGSPPPEVTWYKQGGKLLA----------ESGRFSVSRSGSNSTLTISNV-TPEDSGTYTCAATNSSGSA   77 (86)
T ss_pred             CCeEEEEEEEccCCCCeEEEEECCCEEcC----------CCCcEEEEEcCCeeEEEEEee-ccccCeEEEEEEEcCCCeE
Confidence            37799999998878899999998 65542          12222322    246777775 8999999999999888776


Q ss_pred             EeeeeEEee
Q psy14896        284 ISESVQLAF  292 (813)
Q Consensus       284 ~s~~~~l~v  292 (813)
                      ... +.|.|
T Consensus        78 ~~~-~~l~V   85 (86)
T smart00409       78 SST-TTLTV   85 (86)
T ss_pred             EEE-EEEEE
Confidence            333 66554

>smart00410 IG_like Immunoglobulin like

Probab=98.45  E-value=1.2e-06  Score=70.67  Aligned_cols=72  Identities=35%  Similarity=0.630  Sum_probs=52.3

Q ss_pred             cccEEEEeeeccCCCCeEEEeec-ccccccccccccccCCCccEEee----CCeEEEcCCccccCCeeEEEEeecCceee
Q psy14896        209 LNDITLSCYAGGYPNPSYEWFKE-DYVQDRLVANLIDPLSDKRFTLS----GGNLIINDPRQVEDRGSYHCKASNKFGSI  283 (813)
Q Consensus       209 g~~v~l~C~~~g~P~p~v~W~k~-g~~l~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~  283 (813)
                      |+++.|.|.+.+.+.+.+.|+++ +..+.          ...++...    ..+|.|.+. +.+|+|.|+|.+.+..+..
T Consensus         9 g~~~~l~C~~~~~~~~~~~W~~~~~~~v~----------~~~~~~~~~~~~~~~l~i~~~-~~~d~G~Y~C~v~~~~~~~   77 (86)
T smart00410        9 GESVTLSCEVSGSPPPEVTWYKQGGKLLA----------ESGRFSVSRSGSNSTLTISNV-TPEDSGTYTCAATNSSGSA   77 (86)
T ss_pred             CCeEEEEEEEccCCCCeEEEEECCCEEcC----------CCCcEEEEEcCCeeEEEEEee-ccccCeEEEEEEEcCCCeE
Confidence            37799999998878899999998 65542          12222322    246777775 8999999999999888776


Q ss_pred             EeeeeEEee
Q psy14896        284 ISESVQLAF  292 (813)
Q Consensus       284 ~s~~~~l~v  292 (813)
                      ... +.|.|
T Consensus        78 ~~~-~~l~V   85 (86)
T smart00410       78 SST-TTLTV   85 (86)
T ss_pred             EEE-EEEEE
Confidence            333 66554

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>PHA03376 BARF1; Provisional

Probab=98.42  E-value=2.4e-06  Score=75.00  Aligned_cols=120  Identities=12%  Similarity=0.078  Sum_probs=76.1

Q ss_pred             CceeecCCCeEEEecCC--CCCCcceEEEeeccc---cc------------cccCCccEEE---ccCccEEEeeeeecCC
Q psy14896        304 PEIGNQNWGKAMFCDPP--TNYPGVNYYWARDYF---PN------------FVEEDKRVFV---SYDGALYFSALEQIDA  363 (813)
Q Consensus       304 ~~~~~~~~~~~l~C~~~--~~~p~~~v~W~k~~~---~~------------~~~~~~~~~~---~~~~~L~i~~v~~~D~  363 (813)
                      +.....|+.++|.|...  ...+..+|+|+|.+.   .+            ..+...+..+   ..+-+|.|.+++.+|.
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd   99 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   99 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence            56677899999999853  233668999999532   11            1123344444   2122799999999999


Q ss_pred             eeeEEEEeeeccccCCCC-----CceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEEEEeecCCCeeeEeecCC
Q psy14896        364 GNYSCNVQSKVSDTGRNG-----PFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGS  438 (813)
Q Consensus       364 G~Y~C~a~n~~g~~~~~s-----~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~~~  438 (813)
                      |.|+|...-...+.....     ...+|.|.....    .            ...-+..++.|.+.|.|.|.++|.-+.+
T Consensus       100 GtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~----d------------Fp~~~~~~i~C~sggfP~P~~~Wle~~~  163 (221)
T PHA03376        100 GNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERS----Q------------FPDFSVLTVTCTVNAFPHPHVQWLMPEG  163 (221)
T ss_pred             ceEEEEEEcCCCceeeeeeeeeeecceEEEEeccc----c------------CCCCCeeEEEEecCCcCCchheeccccC
Confidence            999999986543322221     111233332110    0            1114678999998899999999988755


Q ss_pred             c
Q psy14896        439 P  439 (813)
Q Consensus       439 ~  439 (813)
                      .
T Consensus       164 ~  164 (221)
T PHA03376        164 V  164 (221)
T ss_pred             C
Confidence            4

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.41  E-value=1.4e-06  Score=71.57  Aligned_cols=72  Identities=17%  Similarity=0.209  Sum_probs=52.4

Q ss_pred             CCeEEEEEEecCCCCCeEEEEeCCcccCCC------------------cee-eecceEEEECCCCCCCCEEEEEEEEcCC
Q psy14896        687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRN------------------AYF-ENFNRILTIPNVKVEDQGEYICRASNDR  747 (813)
Q Consensus       687 G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~------------------~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~  747 (813)
                      |++|+|.|.+...+...|.|+|+.......                  .++ ...+.+|.|.+++.+|+|.|.|.+.+..
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~   80 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN   80 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence            789999999987666799999976433111                  011 1224679999999999999999999876


Q ss_pred             Cc-eEEEEEEEE
Q psy14896        748 SA-LESSVTISI  758 (813)
Q Consensus       748 G~-~~~~~~l~V  758 (813)
                      |. ....+.|.|
T Consensus        81 ~~~~~~~~~l~v   92 (92)
T cd05741          81 GVTENAKFFLRV   92 (92)
T ss_pred             CcEEEEEEEEEC
Confidence            54 455666553

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.39  E-value=3.8e-07  Score=71.59  Aligned_cols=58  Identities=41%  Similarity=0.625  Sum_probs=43.0

Q ss_pred             CCeEEEEEEecCCC-CCeEEEEeCCccc--CCCceeeecceEEEECCCCCCCCEEEEEEEEc
Q psy14896        687 GDKVRLECVAFGYP-VPSYNWTRRGSPL--PRNAYFENFNRILTIPNVKVEDQGEYICRASN  745 (813)
Q Consensus       687 G~~v~l~C~~~g~P-~p~i~W~k~g~~l--~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N  745 (813)
                      +..++|.|.+.+.| .+.++|+ +....  ..........++|.|.++..+|.|.|+|.|.|
T Consensus        15 ~~~~~l~C~~~~~~~~~~~~W~-~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   15 GGSVTLTCSAEGGPPPPSISWY-DSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             TEEEEEEEEESSEESSEEEEEE-TEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             ceeEEEEEEEccccCCeEEEEE-ecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            33399999999888 7899999 11111  11112234467899999999999999999987

...

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.37  E-value=2.5e-06  Score=71.95  Aligned_cols=75  Identities=19%  Similarity=0.341  Sum_probs=56.1

Q ss_pred             CCCeEEEEEEecCCC----------CCeEEEEeC--CcccC-----C-----C----ceee-------ecceEEEECCCC
Q psy14896        686 AGDKVRLECVAFGYP----------VPSYNWTRR--GSPLP-----R-----N----AYFE-------NFNRILTIPNVK  732 (813)
Q Consensus       686 ~G~~v~l~C~~~g~P----------~p~i~W~k~--g~~l~-----~-----~----~~~~-------~~~~~L~i~~v~  732 (813)
                      .|++|+|.|.....+          ...|.|+|.  +..+.     .     .    .++.       .....|+|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            489999999997644          257999995  22210     0     0    1211       134679999999


Q ss_pred             CCCCEEEEEEEEcCCCceEEEEEEEEEc
Q psy14896        733 VEDQGEYICRASNDRSALESSVTISIQA  760 (813)
Q Consensus       733 ~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  760 (813)
                      .+|+|.|.|.+.......+..+.|.|.+
T Consensus        81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g  108 (110)
T cd05878          81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG  108 (110)
T ss_pred             hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence            9999999999999878889999999875

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.36  E-value=2.6e-06  Score=70.81  Aligned_cols=72  Identities=22%  Similarity=0.458  Sum_probs=52.8

Q ss_pred             CeEEEEEEecCCC---CCeEEEEeCCcc---------------cCC--Ccee--ee---cceEEEECCCCCCCCEEEEEE
Q psy14896        688 DKVRLECVAFGYP---VPSYNWTRRGSP---------------LPR--NAYF--EN---FNRILTIPNVKVEDQGEYICR  742 (813)
Q Consensus       688 ~~v~l~C~~~g~P---~p~i~W~k~g~~---------------l~~--~~~~--~~---~~~~L~i~~v~~~d~G~Y~C~  742 (813)
                      ++|+|.|.....+   ...|.|+|....               +..  ..+.  ..   .+.+|+|.+++.+|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            5789999998654   347999996531               000  0111  11   356899999999999999999


Q ss_pred             EEc-CCCceEEEEEEEEE
Q psy14896        743 ASN-DRSALESSVTISIQ  759 (813)
Q Consensus       743 a~N-~~G~~~~~~~l~V~  759 (813)
                      +.+ ..|.....+.|.|.
T Consensus        81 v~~~~~g~~~~~~~l~V~   98 (98)
T cd05718          81 FATFPQGNRQKVTTLTVL   98 (98)
T ss_pred             EEeCCCCcEEEEEEEEeC
Confidence            975 67889999999873

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.35  E-value=1.4e-06  Score=71.67  Aligned_cols=85  Identities=22%  Similarity=0.262  Sum_probs=57.9

Q ss_pred             cccccEEEEeeecc-CCCCeEEEeecccccccccc-------cccccCCCccEEee--CCeEEEcCCccccCCeeEEEEe
Q psy14896        207 SILNDITLSCYAGG-YPNPSYEWFKEDYVQDRLVA-------NLIDPLSDKRFTLS--GGNLIINDPRQVEDRGSYHCKA  276 (813)
Q Consensus       207 ~~g~~v~l~C~~~g-~P~p~v~W~k~g~~l~~~~~-------~~~~~~~~~~~~~~--~~~l~i~~~~~~~d~G~Y~C~a  276 (813)
                      .+|++|+|.|.... .....|.|+|....+.....       ...+..-..|+.+.  +.+|.|.+. +.+|+|.|.|.+
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~-~~~DsG~Y~c~v   80 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNL-KMEDAGSYRAEI   80 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCC-chHHCEEEEEEE
Confidence            35799999999864 45568999998543211110       01111222345543  467999886 899999999999


Q ss_pred             ecCceeeEeeeeEEee
Q psy14896        277 SNKFGSIISESVQLAF  292 (813)
Q Consensus       277 ~n~~g~~~s~~~~l~v  292 (813)
                      .+..|......+.|.|
T Consensus        81 ~~~~~~~~~~~f~L~v   96 (97)
T cd05775          81 NTKNGVTITKEFTLHI   96 (97)
T ss_pred             EcCCCCeEEEEEEEEe
Confidence            9888887777777765

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.34  E-value=1.3e-06  Score=74.26  Aligned_cols=67  Identities=19%  Similarity=0.297  Sum_probs=50.8

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcc--c------------CCCceee------ecceEEEECCCCCCCCEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSP--L------------PRNAYFE------NFNRILTIPNVKVEDQGEYIC  741 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~--l------------~~~~~~~------~~~~~L~i~~v~~~d~G~Y~C  741 (813)
                      ..+.+|++|+|.|.+.+.+.+.+.|||....  .            ....++.      .....|+|.+++.+|+|.|.|
T Consensus         8 v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C   87 (109)
T cd04983           8 LSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVYFC   87 (109)
T ss_pred             eEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEEEE
Confidence            6789999999999999878889999985321  0            0112221      134579999999999999999


Q ss_pred             EEEcCCC
Q psy14896        742 RASNDRS  748 (813)
Q Consensus       742 ~a~N~~G  748 (813)
                      .+.+..+
T Consensus        88 ~~~~~~~   94 (109)
T cd04983          88 ALSESGG   94 (109)
T ss_pred             EEecCCC
Confidence            9997643

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.31  E-value=5.6e-06  Score=66.87  Aligned_cols=75  Identities=19%  Similarity=0.334  Sum_probs=51.3

Q ss_pred             CceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeC--C---eEEEcCCccccCCee
Q psy14896        197 TDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSG--G---NLIINDPRQVEDRGS  271 (813)
Q Consensus       197 ~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~--~---~l~i~~~~~~~d~G~  271 (813)
                      +++.+.+|     +++.|+|.+.+.....+.|++.+..+.-....  .+..+.|+....  +   +|.|.+. +.+|+|.
T Consensus         5 ~nvtv~~G-----~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~--~~~~d~Rf~~~~~~~~~~tL~I~~v-q~~D~G~   76 (95)
T cd05881           5 EDVTVVEG-----EVAIISCRVKNNDDSVIQLLNPNRQTIYFRDV--RPLKDSRFQLVNFSSNELRVSLSNV-SLSDEGR   76 (95)
T ss_pred             CceEEcCC-----CcEEEEEEEccCCccEEEEEecCCcEEEecCc--cccCCcCEEEEeCCCCEEEEEECcC-CcccCEE
Confidence            34566555     77999999998777889999888554211111  123455555332  2   4788775 9999999


Q ss_pred             EEEEeecC
Q psy14896        272 YHCKASNK  279 (813)
Q Consensus       272 Y~C~a~n~  279 (813)
                      |+|.+...
T Consensus        77 Y~Cqv~t~   84 (95)
T cd05881          77 YFCQLYTD   84 (95)
T ss_pred             EEEEEEcc
Confidence            99999854

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.31  E-value=3.8e-06  Score=70.89  Aligned_cols=83  Identities=23%  Similarity=0.286  Sum_probs=53.2

Q ss_pred             cccEEEEeeeccCC------CCeEEEeecccc---c-----ccccccccccCCCccEEee-----CCeEEEcCCccccCC
Q psy14896        209 LNDITLSCYAGGYP------NPSYEWFKEDYV---Q-----DRLVANLIDPLSDKRFTLS-----GGNLIINDPRQVEDR  269 (813)
Q Consensus       209 g~~v~l~C~~~g~P------~p~v~W~k~g~~---l-----~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~~d~  269 (813)
                      |++|+|.|.....|      ...|.|||....   .     ..............|+.+.     +.+|.|.+. +.+|+
T Consensus         2 G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v-~~~Ds   80 (106)
T cd05877           2 GGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDL-RLEDY   80 (106)
T ss_pred             CCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccC-ChHHC
Confidence            68899999986543      357999997521   0     0000001111223455542     236788885 89999


Q ss_pred             eeEEEEeecCceeeEeeeeEEeee
Q psy14896        270 GSYHCKASNKFGSIISESVQLAFG  293 (813)
Q Consensus       270 G~Y~C~a~n~~g~~~s~~~~l~v~  293 (813)
                      |.|+|.+.+..+.. ...+.|.|.
T Consensus        81 G~Y~C~v~~~~~~~-~~~~~l~v~  103 (106)
T cd05877          81 GRYRCEVIDGLEDE-SVVVALRLR  103 (106)
T ss_pred             EEEEEEEEecccce-EEEEEEEEE
Confidence            99999999988865 666777764

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.31  E-value=3.8e-07  Score=71.56  Aligned_cols=70  Identities=17%  Similarity=0.293  Sum_probs=45.6

Q ss_pred             ccCCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEEEEe
Q psy14896        573 LKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQS  645 (813)
Q Consensus       573 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n  645 (813)
                      ..........+. ++|+|.+..+.+.+.++|+....  ............+++|.|.++..+|.|.|+|+|.|
T Consensus         6 ~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~~~~~--~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen    6 VPPPPVVTSGGS-VTLTCSAEGGPPPPSISWYDSNP--SFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EESTSEEETTEE-EEEEEEESSEESSEEEEEETEEE--EEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             EcCCCcEeecee-EEEEEEEccccCCeEEEEEecCC--ceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            333333333333 99999995444489999991110  01112223334456799999999999999999987

...

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.27  E-value=4.1e-06  Score=70.87  Aligned_cols=77  Identities=22%  Similarity=0.415  Sum_probs=53.2

Q ss_pred             cCCCCCCeEEEEEEecCC----CCCeEEE---------------EeCCcccCCC-----cee------eecceEEEECCC
Q psy14896        682 EAPKAGDKVRLECVAFGY----PVPSYNW---------------TRRGSPLPRN-----AYF------ENFNRILTIPNV  731 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~----P~p~i~W---------------~k~g~~l~~~-----~~~------~~~~~~L~i~~v  731 (813)
                      ..+..|++++|.|.....    +...|+|               |++|......     .++      ...+.+|.|.++
T Consensus         8 v~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~nv   87 (116)
T cd05879           8 VYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHNL   87 (116)
T ss_pred             EEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEccC
Confidence            457889999999999763    3458999               3344433211     122      134568999999


Q ss_pred             CCCCCEEEEEEEEcCCCc--eEEEEEEEE
Q psy14896        732 KVEDQGEYICRASNDRSA--LESSVTISI  758 (813)
Q Consensus       732 ~~~d~G~Y~C~a~N~~G~--~~~~~~l~V  758 (813)
                      +.+|.|.|+|.+.|.-+.  ....+.|.|
T Consensus        88 ~~sD~G~Y~C~v~n~p~~~~~~~~~~l~v  116 (116)
T cd05879          88 DYTDNGTFTCDVKNPPDIVGKSSQVTLYV  116 (116)
T ss_pred             CcccCEEEEEEEEcCCCcCCceeEEEEEC
Confidence            999999999999997553  334555543

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>KOG0613|consensus

Probab=98.26  E-value=2e-05  Score=89.77  Aligned_cols=278  Identities=11%  Similarity=0.003  Sum_probs=164.5

Q ss_pred             EEeecCCCeeeEeecCCcCCCCceeccccceEEEcccccccceEEeCCCceEecccccccccCeEEEEEeeccCCCcEEE
Q psy14896        422 VAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEW  501 (813)
Q Consensus       422 ~~~g~p~p~i~W~~~~~~l~~~~~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W  501 (813)
                      ...|.|.+.+.|+.++..+.......                            +.....++...+.|.+.+.+.+.+.|
T Consensus       212 ~s~gqp~~~~~~~~~g~~i~~~~~~~----------------------------~s~t~e~s~~~i~~~l~~~~G~~~~~  263 (1205)
T KOG0613|consen  212 VSAGQPEPLERWEILGELIAPGSAPS----------------------------MSVTLEASDRKIQLTLRAPRGPYSAH  263 (1205)
T ss_pred             EecCCCccchhhhhcccccCCCCccc----------------------------cccccchhheeeeEEeecCCCchHHH
Confidence            33477999999999999886654322                            11224567888999999988898999


Q ss_pred             eeccccccceeccccCCCCCceEEeeCCeEEEeCCCCCCCCceEEEEEEcCceeEEeecEE-EEE--------------e
Q psy14896        502 FKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQ-LAF--------------G  566 (813)
Q Consensus       502 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~-l~v--------------~  566 (813)
                      +.+....+             .....+.+..+.+. ...+.+.|+|...+..+........ +.+              .
T Consensus       264 ~~~~l~e~-------------~~~~~~~t~~i~~~-~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa  329 (1205)
T KOG0613|consen  264 ILGYLIEQ-------------RKHKGGNTKTIQND-GPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAA  329 (1205)
T ss_pred             Hhcchhhh-------------cccCCCcccccccc-CCccccceeeecccCCcccceeeeEEeeccccccCchhhhhhcc
Confidence            88773211             11223345666665 6777888888887776664322111 111              1


Q ss_pred             ecccccc---cCCCceeccCCCceEEeCCCCCCCccE-EEEccCCCCCcccCCCeEEEee---CccEEEEeecccCCeeE
Q psy14896        567 FIGEFNL---KRAPEIGNQNWGKAMFCDPPTNYPGVN-YYWARDYFPNFVEEDKRVFVSY---DGALYFSALEQIDAGNY  639 (813)
Q Consensus       567 ~~p~~~~---~~~~~~~~~g~~~~l~C~~~~~~p~~~-v~W~k~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y  639 (813)
                      .++...+   .........+..+++.|.. .+.+.+. +.|++++...............   ...+.|..+...+.+.|
T Consensus       330 ~~~~~~v~~~~~~~v~a~d~~~v~m~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~  408 (1205)
T KOG0613|consen  330 RPPEVPVGLVRNLSVTARDNTLVEMPTAL-SGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFT  408 (1205)
T ss_pred             CCccccccccccceeccccCcceeecccc-cCCcCCchheeecccccccccccccccccccccCcchhhhhcCccccccc
Confidence            1111111   1111123345567899998 6777766 9999987543222221122222   23488999999999999


Q ss_pred             EEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCC--CeEEEEEEecCCCCC--eEEEEeCCcccCC
Q psy14896        640 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAG--DKVRLECVAFGYPVP--SYNWTRRGSPLPR  715 (813)
Q Consensus       640 ~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G--~~v~l~C~~~g~P~p--~i~W~k~g~~l~~  715 (813)
                      +|.|.|..|......   ...|.+.+...   .|..+..........+  +.+.+.|.+.++|.|  .++|++++-+...
T Consensus       409 ~~~a~n~~g~~~~~~---~~~vs~~~~gt---~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s~  482 (1205)
T KOG0613|consen  409 RVPAVNKGGTEQTIA---ESTVSEEMPGT---QPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPLSD  482 (1205)
T ss_pred             ccceeccCCcccccc---hhhcccccCCC---CCccccccccccccccCCcccccccCCCCccccceeEeeccCCccccc
Confidence            999999998754432   22333322111   1222222222333444  889999999988855  5556665554432


Q ss_pred             Cc--eeeecceEEEECCCCCCCCEEEEEEEEcCCC
Q psy14896        716 NA--YFENFNRILTIPNVKVEDQGEYICRASNDRS  748 (813)
Q Consensus       716 ~~--~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G  748 (813)
                      ..  -....-.+|.+.-....|+|.|.-...-..|
T Consensus       483 ~s~~l~r~~~tslLlk~~~~~~~A~~~~a~~~~~~  517 (1205)
T KOG0613|consen  483 RSVTLTRDVLTSLLLKVASLSDGAQYTRALRTLQG  517 (1205)
T ss_pred             ccccccccchhhheeeccCCCccchhhhhhhccCC
Confidence            21  1122244678888889999999655544333

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.25  E-value=3.6e-06  Score=71.76  Aligned_cols=76  Identities=20%  Similarity=0.361  Sum_probs=50.6

Q ss_pred             cCCCCCCeEEEEEEecCCC----CCeEEEEeC----Ccc--c---C------CCcee----------eecceEEEECCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYP----VPSYNWTRR----GSP--L---P------RNAYF----------ENFNRILTIPNVK  732 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P----~p~i~W~k~----g~~--l---~------~~~~~----------~~~~~~L~i~~v~  732 (813)
                      +.+.+|++++|.|.....+    ...|.|++.    +.+  +   .      ...++          ...+.+|+|.+++
T Consensus         8 v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~v~   87 (115)
T cd05880           8 VEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQLQ   87 (115)
T ss_pred             EEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEeeCC
Confidence            5678999999999987543    246999852    111  1   0      01111          1124579999999


Q ss_pred             CCCCEEEEEEEEcCCCc--eEEEEEEE
Q psy14896        733 VEDQGEYICRASNDRSA--LESSVTIS  757 (813)
Q Consensus       733 ~~d~G~Y~C~a~N~~G~--~~~~~~l~  757 (813)
                      .+|+|.|.|.+.|..+.  ....+.|.
T Consensus        88 ~~D~G~Y~C~v~~~~~~~~~~~~~~~~  114 (115)
T cd05880          88 PTDNGTYTCQVKNPPDVHGPIGEIRLR  114 (115)
T ss_pred             hhhCEEEEEEEEeCCCCCCCccEEEEe
Confidence            99999999999987553  23445544

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.24  E-value=4.8e-06  Score=67.57  Aligned_cols=67  Identities=24%  Similarity=0.343  Sum_probs=49.1

Q ss_pred             cCCCCCCeEEEEEEecC-CCCCe--EEEEeCCcccCCCcee------eecceEEEECCCCCCCCE-EEEEEEEcCCCc
Q psy14896        682 EAPKAGDKVRLECVAFG-YPVPS--YNWTRRGSPLPRNAYF------ENFNRILTIPNVKVEDQG-EYICRASNDRSA  749 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g-~P~p~--i~W~k~g~~l~~~~~~------~~~~~~L~i~~v~~~d~G-~Y~C~a~N~~G~  749 (813)
                      ..+.+|+.++|.|.+.| .|.+.  |+|||++..|......      .....+|++.. ..+|.| .|+|+|.++++.
T Consensus        11 ~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~-~r~D~g~~~sC~A~l~l~~   87 (100)
T cd05755          11 SWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITV-DREDHGANFSCETELDLRP   87 (100)
T ss_pred             CcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEec-chhhCCcEEEEEEEeccCc
Confidence            34689999999999994 77775  7999999998654322      11245677754 455555 999999998764

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.24  E-value=4.7e-06  Score=70.82  Aligned_cols=65  Identities=25%  Similarity=0.369  Sum_probs=48.9

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCc--ccC------------C----Cceee-----ecceEEEECCCCCCCCEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGS--PLP------------R----NAYFE-----NFNRILTIPNVKVEDQGE  738 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~--~l~------------~----~~~~~-----~~~~~L~i~~v~~~d~G~  738 (813)
                      ..+.+|++++|.|.+.+ +.+.+.|||...  .+.            .    ..++.     .....|.|.+++.+|+|.
T Consensus         8 ~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Dsg~   86 (110)
T cd05899           8 LIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDSAV   86 (110)
T ss_pred             eEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhCEE
Confidence            67899999999999988 778999999532  110            0    11221     124579999999999999


Q ss_pred             EEEEEEcCC
Q psy14896        739 YICRASNDR  747 (813)
Q Consensus       739 Y~C~a~N~~  747 (813)
                      |.|.+.+..
T Consensus        87 Y~Ca~~~~~   95 (110)
T cd05899          87 YLCASSLGG   95 (110)
T ss_pred             EEEEeeCCC
Confidence            999998753

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.23  E-value=3.7e-06  Score=71.01  Aligned_cols=66  Identities=26%  Similarity=0.370  Sum_probs=48.9

Q ss_pred             CCCCCCeEEEEEEecCC-CCCeEEEEeCCcc-----cC------------CCceee----e--cceEEEECCCCCCCCEE
Q psy14896        683 APKAGDKVRLECVAFGY-PVPSYNWTRRGSP-----LP------------RNAYFE----N--FNRILTIPNVKVEDQGE  738 (813)
Q Consensus       683 ~~~~G~~v~l~C~~~g~-P~p~i~W~k~g~~-----l~------------~~~~~~----~--~~~~L~i~~v~~~d~G~  738 (813)
                      .+.+|++++|.|.+.+. +...+.|+|....     +.            ...++.    .  ...+|+|.+++.+|+|.
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~   81 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV   81 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            46789999999999976 6679999995431     00            011111    1  34589999999999999


Q ss_pred             EEEEEEcCCC
Q psy14896        739 YICRASNDRS  748 (813)
Q Consensus       739 Y~C~a~N~~G  748 (813)
                      |.|.+.+..+
T Consensus        82 Y~C~v~~~~~   91 (105)
T cd00099          82 YYCAVSLSGG   91 (105)
T ss_pred             EEEEEecCCC
Confidence            9999998765

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.23  E-value=3e-06  Score=70.03  Aligned_cols=65  Identities=22%  Similarity=0.453  Sum_probs=49.9

Q ss_pred             CCCCeEEEEEEecCC-CC-CeEEEEeCCcccCCCce-e---e------ecceEEEECCCCCCCCEEEEEEEEcCCCc
Q psy14896        685 KAGDKVRLECVAFGY-PV-PSYNWTRRGSPLPRNAY-F---E------NFNRILTIPNVKVEDQGEYICRASNDRSA  749 (813)
Q Consensus       685 ~~G~~v~l~C~~~g~-P~-p~i~W~k~g~~l~~~~~-~---~------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~  749 (813)
                      ..|+.++|.|.+.|+ |. +.|+|++||..+..... .   .      ...+.|.|.....+|.|.|+|+|.|....
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~   87 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP   87 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            468999999999998 64 58999999998865542 1   1      11345778777778999999999997543

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.23  E-value=3.5e-06  Score=69.36  Aligned_cols=74  Identities=22%  Similarity=0.249  Sum_probs=53.7

Q ss_pred             CCCCeEEEEEEecC-CCCCeEEEEeCCcccC--C-----C----------cee--eecceEEEECCCCCCCCEEEEEEEE
Q psy14896        685 KAGDKVRLECVAFG-YPVPSYNWTRRGSPLP--R-----N----------AYF--ENFNRILTIPNVKVEDQGEYICRAS  744 (813)
Q Consensus       685 ~~G~~v~l~C~~~g-~P~p~i~W~k~g~~l~--~-----~----------~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~  744 (813)
                      ..|++|+|.|.... .....|.|+|....+.  .     .          .++  ...+.+|+|.+++.+|+|.|.|.+.
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~   81 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN   81 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence            36999999998864 4455899998643211  0     0          011  1234689999999999999999999


Q ss_pred             cCCCce-EEEEEEEE
Q psy14896        745 NDRSAL-ESSVTISI  758 (813)
Q Consensus       745 N~~G~~-~~~~~l~V  758 (813)
                      +..|.. ...+.|.|
T Consensus        82 ~~~~~~~~~~f~L~v   96 (97)
T cd05775          82 TKNGVTITKEFTLHI   96 (97)
T ss_pred             cCCCCeEEEEEEEEe
Confidence            887764 66777776

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.21  E-value=8e-06  Score=68.90  Aligned_cols=84  Identities=23%  Similarity=0.361  Sum_probs=53.0

Q ss_pred             cccEEEEeeeccCC------CCeEEEeecc---c-c--ccccccc--ccccCCCccEEe-----eCCeEEEcCCccccCC
Q psy14896        209 LNDITLSCYAGGYP------NPSYEWFKED---Y-V--QDRLVAN--LIDPLSDKRFTL-----SGGNLIINDPRQVEDR  269 (813)
Q Consensus       209 g~~v~l~C~~~g~P------~p~v~W~k~g---~-~--l~~~~~~--~~~~~~~~~~~~-----~~~~l~i~~~~~~~d~  269 (813)
                      |++|+|.|.....|      .+.|.|+|..   . +  +......  ........+...     .+.+|.|.+. +.+|+
T Consensus         2 G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v-~~sD~   80 (106)
T cd05714           2 GGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDL-RLEDS   80 (106)
T ss_pred             CCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCC-CHHHC
Confidence            68899999987643      4699999973   1 1  1000000  011112122322     2456888885 99999


Q ss_pred             eeEEEEeecCceeeEeeeeEEeeee
Q psy14896        270 GSYHCKASNKFGSIISESVQLAFGF  294 (813)
Q Consensus       270 G~Y~C~a~n~~g~~~s~~~~l~v~~  294 (813)
                      |.|+|.+.+..+.. +..++|.|..
T Consensus        81 G~Y~C~v~~~~~~~-~~~v~L~V~~  104 (106)
T cd05714          81 GRYRCEVIDGIEDE-QDTVELEVRG  104 (106)
T ss_pred             EEEEEEEEcCCCce-EEEEEEEEEE
Confidence            99999999876654 6778877753

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.20  E-value=3e-06  Score=67.28  Aligned_cols=64  Identities=14%  Similarity=0.136  Sum_probs=43.7

Q ss_pred             ceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEe-eCcc------EEEEeecccCCeeEEEEEEeeecCcc
Q psy14896        586 KAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVS-YDGA------LYFSALEQIDAGNYSCNVQSKVSDTG  651 (813)
Q Consensus       586 ~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~-~~~~------L~i~~~~~~d~G~Y~C~a~n~~g~~~  651 (813)
                      +.|.|.+..++|.+.|+|++++.++.  ........ .+++      |.+.....+|.+.|+|+|.|......
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~--~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~~   72 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELK--GVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKST   72 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEcc--CceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCCC
Confidence            57999998888999999999997643  22112221 2333      44444445667899999999886643

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.20  E-value=9e-06  Score=66.38  Aligned_cols=62  Identities=19%  Similarity=0.314  Sum_probs=47.1

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCC----ceeeecceEEEECCCCCCCCEEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRN----AYFENFNRILTIPNVKVEDQGEYICRAS  744 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~----~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  744 (813)
                      ..+.+|++|+|.|.... +.-.+.|+|+|......    .........+.|..++.+|+|.|.|...
T Consensus        10 ~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711          10 PVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             CccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence            46789999999998765 45589999998764321    1112234579999999999999999975

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.17  E-value=1.4e-05  Score=66.70  Aligned_cols=74  Identities=22%  Similarity=0.399  Sum_probs=55.2

Q ss_pred             CCeEEEEEEecCCC-----------CCeEEEEeC-----CcccCC-------Cc----------ee-------eecceEE
Q psy14896        687 GDKVRLECVAFGYP-----------VPSYNWTRR-----GSPLPR-------NA----------YF-------ENFNRIL  726 (813)
Q Consensus       687 G~~v~l~C~~~g~P-----------~p~i~W~k~-----g~~l~~-------~~----------~~-------~~~~~~L  726 (813)
                      |.+++|.|...-.|           .+.|.|+|-     |.....       +.          +.       ...+.+|
T Consensus         2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL   81 (117)
T cd05901           2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL   81 (117)
T ss_pred             CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence            78899999998544           238999984     221110       00          11       1235789


Q ss_pred             EECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEc
Q psy14896        727 TIPNVKVEDQGEYICRASNDRSALESSVTISIQA  760 (813)
Q Consensus       727 ~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  760 (813)
                      .|.+++.+|+|.|.|.+.+.....+..+.|.|.+
T Consensus        82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G  115 (117)
T cd05901          82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG  115 (117)
T ss_pred             EEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence            9999999999999999999998999999999874

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.17  E-value=1.8e-05  Score=64.75  Aligned_cols=71  Identities=20%  Similarity=0.396  Sum_probs=50.6

Q ss_pred             eEEEEEEecCC-CCC---eEEEEeCC--cc--c---CC-------C---cee-----eecceEEEECCCCCCCCEEEEEE
Q psy14896        689 KVRLECVAFGY-PVP---SYNWTRRG--SP--L---PR-------N---AYF-----ENFNRILTIPNVKVEDQGEYICR  742 (813)
Q Consensus       689 ~v~l~C~~~g~-P~p---~i~W~k~g--~~--l---~~-------~---~~~-----~~~~~~L~i~~v~~~d~G~Y~C~  742 (813)
                      +|+|.|..... |..   .|+|.|..  ..  +   ..       .   .+.     ...+.+|.|.+++.+|.|.|.|.
T Consensus         2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~   81 (99)
T cd05886           2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE   81 (99)
T ss_pred             cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence            68999999743 211   69998842  11  1   00       0   011     11246899999999999999999


Q ss_pred             EEc-CCCceEEEEEEEEE
Q psy14896        743 ASN-DRSALESSVTISIQ  759 (813)
Q Consensus       743 a~N-~~G~~~~~~~l~V~  759 (813)
                      +.| ..|..+..+.|+|.
T Consensus        82 v~t~P~g~~~~~~~L~V~   99 (99)
T cd05886          82 FATFPTGNRESQLNLTVY   99 (99)
T ss_pred             EEeCCCCCeEEEEEEEEC
Confidence            999 78989999999883

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.16  E-value=5e-06  Score=65.94  Aligned_cols=65  Identities=14%  Similarity=0.225  Sum_probs=44.6

Q ss_pred             ceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeC-cc------EEEEeecccCCeeEEEEEEeeecCcc
Q psy14896        586 KAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD-GA------LYFSALEQIDAGNYSCNVQSKVSDTG  651 (813)
Q Consensus       586 ~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~-~~------L~i~~~~~~d~G~Y~C~a~n~~g~~~  651 (813)
                      ++|+|.+..++|.+.|+|+++|.++... ........+ ++      |.|.....+|...|+|+|.|......
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~-~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~~   73 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGA-PTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHDS   73 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCc-ceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCCC
Confidence            5799999888899999999999764321 112222333 33      44444556678899999999886543

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.16  E-value=5.3e-06  Score=65.85  Aligned_cols=64  Identities=14%  Similarity=0.123  Sum_probs=43.0

Q ss_pred             eEEEecCCCCCCcceEEEeeccccccccCCccEEEc-cCcc------EEEeeeeecCCeeeEEEEeeeccccC
Q psy14896        313 KAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVS-YDGA------LYFSALEQIDAGNYSCNVQSKVSDTG  378 (813)
Q Consensus       313 ~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~-~~~~------L~i~~v~~~D~G~Y~C~a~n~~g~~~  378 (813)
                      +.|.|.+.+++|.++|+|+++++++..  ....... .+++      |.+.....+|.+.|+|+|.|......
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~--~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~~   72 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKG--VKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKST   72 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccC--ceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCCC
Confidence            479999988899999999999988632  1122222 2232      33433344556799999999876543

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.15  E-value=1.5e-05  Score=66.92  Aligned_cols=83  Identities=17%  Similarity=0.279  Sum_probs=51.7

Q ss_pred             cccEEEEeeeccCC------------CCeEEEeecc--cccc---cccc-cccccCCCccEEe-------eCCeEEEcCC
Q psy14896        209 LNDITLSCYAGGYP------------NPSYEWFKED--YVQD---RLVA-NLIDPLSDKRFTL-------SGGNLIINDP  263 (813)
Q Consensus       209 g~~v~l~C~~~g~P------------~p~v~W~k~g--~~l~---~~~~-~~~~~~~~~~~~~-------~~~~l~i~~~  263 (813)
                      |++|+|.|.....+            .+.|.|+|-.  ++..   .... ..+...-..|..+       .+.+|.|.+.
T Consensus         2 G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~nl   81 (112)
T cd05900           2 GSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITEL   81 (112)
T ss_pred             CCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEeec
Confidence            68899999986432            4699999953  2111   0000 0111222235554       2457888886


Q ss_pred             ccccCCeeEEEEeecCceeeEeeeeEEeee
Q psy14896        264 RQVEDRGSYHCKASNKFGSIISESVQLAFG  293 (813)
Q Consensus       264 ~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~  293 (813)
                       +.+|+|.|+|.+.+..... +..+.|.|.
T Consensus        82 -~~sDsG~Y~C~V~~g~~~~-~~~v~l~v~  109 (112)
T cd05900          82 -RSNDSGTYRCEVMHGIEDN-YDTVEVQVK  109 (112)
T ss_pred             -ccccCEEEEEEEecCCCCc-eeEEEEEEE
Confidence             8999999999999765544 555666654

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.13  E-value=8.1e-06  Score=64.74  Aligned_cols=68  Identities=13%  Similarity=0.223  Sum_probs=45.3

Q ss_pred             eEEEecCCCCCCcceEEEeeccccccccCCccEEEccC-ccEE------EeeeeecCCeeeEEEEeeeccccCCCC
Q psy14896        313 KAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD-GALY------FSALEQIDAGNYSCNVQSKVSDTGRNG  381 (813)
Q Consensus       313 ~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~-~~L~------i~~v~~~D~G~Y~C~a~n~~g~~~~~s  381 (813)
                      ++|.|.+.+++|.++|+|++||+++.... ..+....+ ++++      |.....+|...|+|+|.+........+
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~-~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~~~~~   76 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAP-TSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHDSDRS   76 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcc-eeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCCCCce
Confidence            57999998899999999999998753322 22333334 3433      333335566799999998876443333

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.13  E-value=1.3e-05  Score=66.89  Aligned_cols=75  Identities=21%  Similarity=0.403  Sum_probs=54.2

Q ss_pred             CCCeEEEEEEecCCC-------CCeEEEEeCC-----ccc----CCCc----------eee-------ecceEEEECCCC
Q psy14896        686 AGDKVRLECVAFGYP-------VPSYNWTRRG-----SPL----PRNA----------YFE-------NFNRILTIPNVK  732 (813)
Q Consensus       686 ~G~~v~l~C~~~g~P-------~p~i~W~k~g-----~~l----~~~~----------~~~-------~~~~~L~i~~v~  732 (813)
                      .|++|+|.|...-.|       .+.|.|.|..     ..+    ..+.          +..       ..+.+|.|.+++
T Consensus         1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~   80 (110)
T cd05902           1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR   80 (110)
T ss_pred             CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence            378999999966333       3689999851     111    0110          111       135689999999


Q ss_pred             CCCCEEEEEEEEcCCCceEEEEEEEEEc
Q psy14896        733 VEDQGEYICRASNDRSALESSVTISIQA  760 (813)
Q Consensus       733 ~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  760 (813)
                      .+|+|.|.|.+.......+..+.|.|.+
T Consensus        81 ~~D~G~Y~C~v~~g~~~~~~~v~L~V~g  108 (110)
T cd05902          81 YSDSGTYRCEVVLGINDEQDTVPLEVTG  108 (110)
T ss_pred             HHHCEEEEEEEEECCcccEEEEEEEEEE
Confidence            9999999999999777788899998874

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.12  E-value=1e-05  Score=69.39  Aligned_cols=77  Identities=21%  Similarity=0.430  Sum_probs=50.6

Q ss_pred             cCCCCCCeEEEEEEecCCC----CCeEEEEeCCc----c--c---------C-CCceee----------ecceEEEECCC
Q psy14896        682 EAPKAGDKVRLECVAFGYP----VPSYNWTRRGS----P--L---------P-RNAYFE----------NFNRILTIPNV  731 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P----~p~i~W~k~g~----~--l---------~-~~~~~~----------~~~~~L~i~~v  731 (813)
                      ..+.+|++|+|.|......    ...|.|++...    +  +         . ...++.          ..+.+|+|.++
T Consensus         8 v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   87 (116)
T cd05715           8 VYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIHNL   87 (116)
T ss_pred             EEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEeeC
Confidence            5678999999999986432    24699987321    0  0         0 111111          12357999999


Q ss_pred             CCCCCEEEEEEEEcCCCc--eEEEEEEEE
Q psy14896        732 KVEDQGEYICRASNDRSA--LESSVTISI  758 (813)
Q Consensus       732 ~~~d~G~Y~C~a~N~~G~--~~~~~~l~V  758 (813)
                      +.+|+|.|.|.+.|.-+.  ....+.|.|
T Consensus        88 ~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~  116 (116)
T cd05715          88 QFTDNGTYTCDVKNPPDIVGKPGEIRLRV  116 (116)
T ss_pred             CcccCEEEEEEEEeCCCCCCCccEEEEeC
Confidence            999999999999987443  233455543

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.12  E-value=5.5e-06  Score=65.53  Aligned_cols=66  Identities=12%  Similarity=0.110  Sum_probs=44.3

Q ss_pred             ceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCcc------EEEEeecccCCeeEEEEEEeeecCcc
Q psy14896        586 KAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA------LYFSALEQIDAGNYSCNVQSKVSDTG  651 (813)
Q Consensus       586 ~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~------L~i~~~~~~d~G~Y~C~a~n~~g~~~  651 (813)
                      ++|+|.+..++|.+.|+|+|+|.++.-..........+++      |.|..-..+|...|+|+|.|..-...
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~~~   73 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLNAT   73 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcCCC
Confidence            5799999888999999999999863211111111122333      55555556778899999999876543

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.12  E-value=2.2e-05  Score=66.72  Aligned_cols=79  Identities=19%  Similarity=0.299  Sum_probs=50.7

Q ss_pred             CCceeecCCCccccccEEEEeeeccCCCCeEEEeecccc--ccccccccc--ccCCCccEEee------CCeEEEcCCcc
Q psy14896        196 PTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYV--QDRLVANLI--DPLSDKRFTLS------GGNLIINDPRQ  265 (813)
Q Consensus       196 p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~--l~~~~~~~~--~~~~~~~~~~~------~~~l~i~~~~~  265 (813)
                      |..+.+.+|     ++|.|.|.+.+.+.+.+.|||....  .........  ......|+.+.      .-+|.|.+. +
T Consensus         5 ~~~v~~~~G-----~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~-~   78 (109)
T cd04983           5 PQSLSVQEG-----ENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAA-Q   78 (109)
T ss_pred             CCceEEcCC-----CCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCC-C
Confidence            455666666     7799999998878889999996421  100000000  01233455432      225777775 9


Q ss_pred             ccCCeeEEEEeecCc
Q psy14896        266 VEDRGSYHCKASNKF  280 (813)
Q Consensus       266 ~~d~G~Y~C~a~n~~  280 (813)
                      .+|+|.|.|.+.+..
T Consensus        79 ~~DsG~Y~C~~~~~~   93 (109)
T cd04983          79 LSDSAVYFCALSESG   93 (109)
T ss_pred             HHHCEEEEEEEecCC
Confidence            999999999999754

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.11  E-value=2.4e-05  Score=60.40  Aligned_cols=76  Identities=14%  Similarity=0.221  Sum_probs=54.2

Q ss_pred             cCCCCCCeEEEEEEecCCC--CCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYP--VPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ  759 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P--~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  759 (813)
                      ..+..|++++|+|+....+  .+.|+|.-.+.......  .....+|.+..++..|+|..+|.++-+.-.....+.|.|.
T Consensus         9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~--~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~Vl   86 (88)
T cd07694           9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQIL--NQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKVL   86 (88)
T ss_pred             CeeecCCcEEEEEecCCCCCCCccEEEeCCCCccceec--cCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeEEEE
Confidence            3467899999999997544  45999998766543211  2346789999999999999999997443333445555553

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.11  E-value=5.9e-06  Score=67.06  Aligned_cols=80  Identities=15%  Similarity=0.133  Sum_probs=53.3

Q ss_pred             ccccCCCceeccCCCceEEeCCCCCCCccE--EEEccCCCCCcccCCCe---EEEeeCccEEEEeecccCCeeEEEEEEe
Q psy14896        571 FNLKRAPEIGNQNWGKAMFCDPPTNYPGVN--YYWARDYFPNFVEEDKR---VFVSYDGALYFSALEQIDAGNYSCNVQS  645 (813)
Q Consensus       571 ~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~--v~W~k~~~~~~~~~~~~---~~~~~~~~L~i~~~~~~d~G~Y~C~a~n  645 (813)
                      +.+...+..+.+|+.++|+|.+..+.|.+.  |+|||++..+.......   -......+|++..-..+|.-.|+|+|.+
T Consensus         4 V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l   83 (100)
T cd05755           4 VELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETEL   83 (100)
T ss_pred             EEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEe
Confidence            334556667889999999999988999987  79999987642211000   0011223477664445555599999998


Q ss_pred             eecCc
Q psy14896        646 KVSDT  650 (813)
Q Consensus       646 ~~g~~  650 (813)
                      ..+..
T Consensus        84 ~l~~~   88 (100)
T cd05755          84 DLRPE   88 (100)
T ss_pred             ccCcc
Confidence            87653

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.10  E-value=5.7e-06  Score=68.33  Aligned_cols=71  Identities=21%  Similarity=0.415  Sum_probs=44.0

Q ss_pred             cccEEEEeeeccC-C-CCeEEEeecccccccccc-cccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCce
Q psy14896        209 LNDITLSCYAGGY-P-NPSYEWFKEDYVQDRLVA-NLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFG  281 (813)
Q Consensus       209 g~~v~l~C~~~g~-P-~p~v~W~k~g~~l~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g  281 (813)
                      |+.++|.|.+.|. | .+.|+|+|||..+..... .......+..+.. ...|.+... ..+|.|.|+|+|.+...
T Consensus        13 ~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~-~s~l~v~~~-~~~~~~~y~C~v~h~~~   86 (95)
T cd00098          13 GGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSV-SSQLTVSPS-DWNSGDTYTCVVTHESL   86 (95)
T ss_pred             CCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEE-EEEEEECHH-HhCCCCCEEEEEEeCCC
Confidence            4679999999986 6 468999999987743321 1111122222221 112333332 34699999999998654

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.09  E-value=1.7e-05  Score=65.83  Aligned_cols=81  Identities=20%  Similarity=0.304  Sum_probs=49.8

Q ss_pred             ccEEEEeeeccCC---CCeEEEeecccccccc-------cccccccCCCccEEee-----CCeEEEcCCccccCCeeEEE
Q psy14896        210 NDITLSCYAGGYP---NPSYEWFKEDYVQDRL-------VANLIDPLSDKRFTLS-----GGNLIINDPRQVEDRGSYHC  274 (813)
Q Consensus       210 ~~v~l~C~~~g~P---~p~v~W~k~g~~l~~~-------~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~~d~G~Y~C  274 (813)
                      ++|+|.|.....+   ...|.|+|....-...       ....+......|..+.     +.+|.|.+. +.+|+|.|.|
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v-~~~D~G~Y~C   79 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNL-RLEDEGNYIC   79 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccC-CcccCEEEEE
Confidence            4599999997644   4479999976420000       0011112223344332     457888885 8999999999


Q ss_pred             Eeec-CceeeEeeeeEEee
Q psy14896        275 KASN-KFGSIISESVQLAF  292 (813)
Q Consensus       275 ~a~n-~~g~~~s~~~~l~v  292 (813)
                      .+.+ ..|.. ...+.|.|
T Consensus        80 ~v~~~~~g~~-~~~~~l~V   97 (98)
T cd05718          80 EFATFPQGNR-QKVTTLTV   97 (98)
T ss_pred             EEEeCCCCcE-EEEEEEEe
Confidence            9975 45554 55566665

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.09  E-value=1.8e-05  Score=70.55  Aligned_cols=81  Identities=15%  Similarity=0.302  Sum_probs=61.3

Q ss_pred             cCCCCCCeEEEEEEec-CCCCCeEEEEeCCcccC----------C--Cceeee-----cceEEEECCCCCCCCEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAF-GYPVPSYNWTRRGSPLP----------R--NAYFEN-----FNRILTIPNVKVEDQGEYICRA  743 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~-g~P~p~i~W~k~g~~l~----------~--~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a  743 (813)
                      ..|.+|++|+|.|... +...+.|+|+|....+.          +  .++.+.     ....|+|.+++.+|+|.|.|..
T Consensus        25 v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F  104 (189)
T PHA02987         25 ITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIF  104 (189)
T ss_pred             EEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEE
Confidence            4578999999999985 66678999999754321          0  012221     3568999999999999999998


Q ss_pred             Ec-CCC-ceEEEEEEEEEcCC
Q psy14896        744 SN-DRS-ALESSVTISIQAEP  762 (813)
Q Consensus       744 ~N-~~G-~~~~~~~l~V~~~P  762 (813)
                      .- +.| ..+....|+|..+-
T Consensus       105 ~tfp~G~~~~gt~CLtVt~~~  125 (189)
T PHA02987        105 NTLLSKNNEKGVVCLNVTTDS  125 (189)
T ss_pred             EecCCCCCceeEEEEEEEchh
Confidence            63 346 78899999998753

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.09  E-value=9.7e-06  Score=68.63  Aligned_cols=75  Identities=17%  Similarity=0.336  Sum_probs=50.8

Q ss_pred             ceeccCCCceEEeCCCCC---CCccEEEEc---------------cCCCCCc---ccCCCeEEEe-----eCccEEEEee
Q psy14896        578 EIGNQNWGKAMFCDPPTN---YPGVNYYWA---------------RDYFPNF---VEEDKRVFVS-----YDGALYFSAL  631 (813)
Q Consensus       578 ~~~~~g~~~~l~C~~~~~---~p~~~v~W~---------------k~~~~~~---~~~~~~~~~~-----~~~~L~i~~~  631 (813)
                      ..+..|+.++|.|.....   .+...|+|.               ++|.+..   ..-..|+...     .+.+|.|.++
T Consensus         8 v~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~nv   87 (116)
T cd05879           8 VYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHNL   87 (116)
T ss_pred             EEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEccC
Confidence            456789999999998432   245789993               2333211   0111355442     3457999999


Q ss_pred             cccCCeeEEEEEEeeecCccc
Q psy14896        632 EQIDAGNYSCNVQSKVSDTGR  652 (813)
Q Consensus       632 ~~~d~G~Y~C~a~n~~g~~~~  652 (813)
                      +.+|.|.|+|.+.|.-+..+.
T Consensus        88 ~~sD~G~Y~C~v~n~p~~~~~  108 (116)
T cd05879          88 DYTDNGTFTCDVKNPPDIVGK  108 (116)
T ss_pred             CcccCEEEEEEEEcCCCcCCc
Confidence            999999999999998765443

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>KOG1480|consensus

Probab=98.08  E-value=2.5e-06  Score=90.70  Aligned_cols=186  Identities=19%  Similarity=0.293  Sum_probs=117.8

Q ss_pred             CceeeCCCceeecCCCccccccEEEEeeeccCCCC----eEEEeecccccccccccccccCCCccEEeeCCeEEEcCCcc
Q psy14896        190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP----SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQ  265 (813)
Q Consensus       190 P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p----~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~  265 (813)
                      |.|+.+|.+..+..+     .++.|.|.+...|..    .=.|..+.+-...   ...++.++..+.  .-...|... +
T Consensus        25 ~~~~~~p~~~yii~~-----~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~---~~~d~tsg~~~~--~~si~Isr~-~   93 (909)
T KOG1480|consen   25 PHFTTEPKSAYIIKN-----KPLRLQCKANPATQIRFKCNSEWVHQSRHEKL---EGTDETSGLGVR--EVSIDISRQ-Q   93 (909)
T ss_pred             ceeeecCCccceecC-----CCccceecCCcccccccccChhhhcCccceee---eccCcccceeEE--eeeeeeehh-h
Confidence            689999998888777     559999998643322    2235444432100   011111111111  112233322 2


Q ss_pred             ccCCe-----eEEEEeecCceeeEeeeeEEeeeeeccccc-CCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccc
Q psy14896        266 VEDRG-----SYHCKASNKFGSIISESVQLAFGFIGEFNL-KRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFV  339 (813)
Q Consensus       266 ~~d~G-----~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~-~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~  339 (813)
                      .++.|     .-.|.|....|...+..+.+++.+...+.. .+.-..+..+...++.|..+.+.|...++|+|++..+  
T Consensus        94 v~~~~~~~d~~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~--  171 (909)
T KOG1480|consen   94 VETSGGPEDYWCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVI--  171 (909)
T ss_pred             hhcccCccceeeeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCC--
Confidence            23322     345667778886666666666666555333 3555667777778999999999999999999999874  


Q ss_pred             cCCccEEEccCccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEE
Q psy14896        340 EEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKV  388 (813)
Q Consensus       340 ~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v  388 (813)
                      ..+..+....+..|.|..+...|.|+|+|+|.|..+........+.+.|
T Consensus       172 ~pd~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vyv  220 (909)
T KOG1480|consen  172 DPDANVIRASDHNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVYV  220 (909)
T ss_pred             CccccchhhhcCCccccchhhhhcccceeeeehhhccccccceEEEEEE
Confidence            3355666667889999999999999999999998875444333333333

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.08  E-value=2.3e-05  Score=66.14  Aligned_cols=84  Identities=21%  Similarity=0.351  Sum_probs=52.1

Q ss_pred             cccEEEEeeeccCC----------CCeEEEeecc--cccccc--cccc--cccCCCccEEee-------CCeEEEcCCcc
Q psy14896        209 LNDITLSCYAGGYP----------NPSYEWFKED--YVQDRL--VANL--IDPLSDKRFTLS-------GGNLIINDPRQ  265 (813)
Q Consensus       209 g~~v~l~C~~~g~P----------~p~v~W~k~g--~~l~~~--~~~~--~~~~~~~~~~~~-------~~~l~i~~~~~  265 (813)
                      |++|+|.|.....+          ...|.|||..  +...-.  ....  ....-..|..+.       +.+|.|.+. +
T Consensus         2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l-~   80 (110)
T cd05878           2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRL-R   80 (110)
T ss_pred             CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCC-C
Confidence            68899999997543          2579999963  221100  0001  112222355541       345888885 9


Q ss_pred             ccCCeeEEEEeecCceeeEeeeeEEeeee
Q psy14896        266 VEDRGSYHCKASNKFGSIISESVQLAFGF  294 (813)
Q Consensus       266 ~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~  294 (813)
                      .+|+|.|.|.+....... ...++|.|..
T Consensus        81 ~sD~G~Y~C~v~~~~~~~-~~~v~l~V~g  108 (110)
T cd05878          81 SSDSGVYRCEVMHGIEDE-QDTVPLEVTG  108 (110)
T ss_pred             hhhCEEEEEEEEeCCCcc-eEEEEEEEEE
Confidence            999999999998754433 5567777653

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.06  E-value=2.8e-05  Score=64.44  Aligned_cols=70  Identities=23%  Similarity=0.419  Sum_probs=50.2

Q ss_pred             eEEEEEEecCCC---CCeEEEEeCCc---c--cC-----------C---Cc-eee----ecceEEEECCCCCCCCEEEEE
Q psy14896        689 KVRLECVAFGYP---VPSYNWTRRGS---P--LP-----------R---NA-YFE----NFNRILTIPNVKVEDQGEYIC  741 (813)
Q Consensus       689 ~v~l~C~~~g~P---~p~i~W~k~g~---~--l~-----------~---~~-~~~----~~~~~L~i~~v~~~d~G~Y~C  741 (813)
                      +|+|.|.....+   ...|.|+|...   +  +.           .   ++ ++.    ..+..|+|.+++.+|+|.|.|
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C   81 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC   81 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence            689999987544   34899999421   1  10           0   00 111    125579999999999999999


Q ss_pred             EEEc-CCCceEEEEEEEE
Q psy14896        742 RASN-DRSALESSVTISI  758 (813)
Q Consensus       742 ~a~N-~~G~~~~~~~l~V  758 (813)
                      .+.| ..|..+..+.|.|
T Consensus        82 ~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          82 RVITFPAGNFEAELVLTV   99 (100)
T ss_pred             EEEeCCCCCeeeEEEEEe
Confidence            9998 6787788888887

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.05  E-value=3.1e-05  Score=65.26  Aligned_cols=81  Identities=20%  Similarity=0.341  Sum_probs=49.4

Q ss_pred             eeCCCceeecCCCccccccEEEEeeeccCC-CCeEEEeecc--cccccccc--cccccCCCccEEee----CCeEEEcCC
Q psy14896        193 IKQPTDVVFDLSKRSILNDITLSCYAGGYP-NPSYEWFKED--YVQDRLVA--NLIDPLSDKRFTLS----GGNLIINDP  263 (813)
Q Consensus       193 ~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P-~p~v~W~k~g--~~l~~~~~--~~~~~~~~~~~~~~----~~~l~i~~~  263 (813)
                      ...|..+.+.+|     ++|+|.|.+.+.+ ...+.|||..  +.......  .........++...    ..+|.|.+.
T Consensus         4 ~Q~p~~~~v~~G-----~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~   78 (106)
T cd04980           4 TQSPATLSVSPG-----ESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRV   78 (106)
T ss_pred             EECCCcEEECCC-----CCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCC
Confidence            344566777666     7799999997755 6789999864  21111000  00011112344432    124777775


Q ss_pred             ccccCCeeEEEEeecC
Q psy14896        264 RQVEDRGSYHCKASNK  279 (813)
Q Consensus       264 ~~~~d~G~Y~C~a~n~  279 (813)
                       +.+|+|.|.|.+.+.
T Consensus        79 -~~~Dsg~Y~Ca~~~~   93 (106)
T cd04980          79 -EPEDAAVYYCQQYGT   93 (106)
T ss_pred             -ChHHCEEEEEEEeCC
Confidence             899999999999754

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.05  E-value=2.9e-05  Score=64.08  Aligned_cols=72  Identities=19%  Similarity=0.308  Sum_probs=51.6

Q ss_pred             CCeEEEEEEecCCCCC-eEEEEeCCcc----cC-----CCc----ee---------eecceEEEECCCCCCCCEEEEEEE
Q psy14896        687 GDKVRLECVAFGYPVP-SYNWTRRGSP----LP-----RNA----YF---------ENFNRILTIPNVKVEDQGEYICRA  743 (813)
Q Consensus       687 G~~v~l~C~~~g~P~p-~i~W~k~g~~----l~-----~~~----~~---------~~~~~~L~i~~v~~~d~G~Y~C~a  743 (813)
                      |++|+|.|........ .|.|+|....    +.     .+.    .+         ...+.+|+|.+++.+|+|.|.|..
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            7899999987654333 6999985321    00     000    01         113457999999999999999998


Q ss_pred             E-cCCCceEEEEEEEE
Q psy14896        744 S-NDRSALESSVTISI  758 (813)
Q Consensus       744 ~-N~~G~~~~~~~l~V  758 (813)
                      . .+.|..+..+.|+|
T Consensus        81 ~~~p~g~~~~~~~L~v   96 (97)
T cd05846          81 NTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EeCCCCCeeeEEEEEE
Confidence            7 45788888888887

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.05  E-value=2e-05  Score=64.30  Aligned_cols=74  Identities=19%  Similarity=0.345  Sum_probs=45.0

Q ss_pred             CceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCC
Q psy14896        190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR  269 (813)
Q Consensus       190 P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~  269 (813)
                      |.+...| ..+|.+|     ++|+|.|.... +.-.+.|||+|......   ........++   ...+.|.. ++.+|+
T Consensus         2 P~l~a~p-~~vV~~G-----~~VTL~C~~~~-~~~~f~l~k~g~~~~~~---~~~~~~~~~~---~a~f~I~~-~~~~~~   67 (94)
T cd05711           2 PFLSAHP-SPVVPSG-----ENVTLQCHSDI-RFDRFILYKEGRSKPVL---HLYEKHHGGF---QASFPLGP-VTPAHA   67 (94)
T ss_pred             CEEEecC-CCccCCC-----CeEEEEEecCC-CCCEEEEEECCCCCCce---ecccccCCeE---EEEEEecC-CCcccC
Confidence            4455544 3445555     77999998865 56689999999642100   0000000111   12456666 599999


Q ss_pred             eeEEEEee
Q psy14896        270 GSYHCKAS  277 (813)
Q Consensus       270 G~Y~C~a~  277 (813)
                      |.|+|...
T Consensus        68 G~Y~C~~~   75 (94)
T cd05711          68 GTYRCYGS   75 (94)
T ss_pred             EEEEEEEE
Confidence            99999975

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.04  E-value=1.3e-05  Score=67.55  Aligned_cols=65  Identities=20%  Similarity=0.313  Sum_probs=47.1

Q ss_pred             cCCCCCCeEEEEEEecCCC-CCeEEEEeCC--ccc---C-------C--Cceeee----cceEEEECCCCCCCCEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYP-VPSYNWTRRG--SPL---P-------R--NAYFEN----FNRILTIPNVKVEDQGEYICR  742 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P-~p~i~W~k~g--~~l---~-------~--~~~~~~----~~~~L~i~~v~~~d~G~Y~C~  742 (813)
                      ..+.+|++|+|.|.+.+.+ ...+.|||..  ...   .       .  ..++..    ....|+|.+++.+|+|.|.|.
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca   89 (106)
T cd04980          10 LSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYYCQ   89 (106)
T ss_pred             EEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEEEE
Confidence            5678999999999998765 5689999842  211   0       0  112221    234699999999999999999


Q ss_pred             EEcC
Q psy14896        743 ASND  746 (813)
Q Consensus       743 a~N~  746 (813)
                      +.+.
T Consensus        90 ~~~~   93 (106)
T cd04980          90 QYGT   93 (106)
T ss_pred             EeCC
Confidence            9764

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.01  E-value=3.7e-05  Score=64.05  Aligned_cols=82  Identities=20%  Similarity=0.217  Sum_probs=49.0

Q ss_pred             cccEEEEeeeccCC---CCeEEEeecccccc--cccc-cc----cccCCCccEEee-------CCeEEEcCCccccCCee
Q psy14896        209 LNDITLSCYAGGYP---NPSYEWFKEDYVQD--RLVA-NL----IDPLSDKRFTLS-------GGNLIINDPRQVEDRGS  271 (813)
Q Consensus       209 g~~v~l~C~~~g~P---~p~v~W~k~g~~l~--~~~~-~~----~~~~~~~~~~~~-------~~~l~i~~~~~~~d~G~  271 (813)
                      |++|+|.|......   ...|.|||......  -... ..    .......|..+.       +.+|.|.+. +.+|+|.
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v-~~~D~G~   79 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNV-RASDEGL   79 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcC-ChhhCEE
Confidence            57899999986322   23688988652110  0000 00    001112344432       236888885 9999999


Q ss_pred             EEEEeecCceeeEeeeeEEee
Q psy14896        272 YHCKASNKFGSIISESVQLAF  292 (813)
Q Consensus       272 Y~C~a~n~~g~~~s~~~~l~v  292 (813)
                      |+|.+.|..+.. ...+.|.|
T Consensus        80 Y~C~v~~~~~~~-~~~i~l~v   99 (100)
T cd05713          80 YTCFFQSDGFYE-EATVELKV   99 (100)
T ss_pred             EEEEEecCCcEE-EEEEEEEE
Confidence            999999877653 55666665

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.01  E-value=1.6e-05  Score=62.90  Aligned_cols=67  Identities=12%  Similarity=0.104  Sum_probs=43.8

Q ss_pred             eEEEecCCCCCCcceEEEeeccccccccCCccEEEccCc------cEEEeeeeecCCeeeEEEEeeeccccCC
Q psy14896        313 KAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDG------ALYFSALEQIDAGNYSCNVQSKVSDTGR  379 (813)
Q Consensus       313 ~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~------~L~i~~v~~~D~G~Y~C~a~n~~g~~~~  379 (813)
                      ++|.|.+.+++|.+.|+|+|||+++.-..........++      .|.+..-..+|...|+|+|.+.......
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~~~~   74 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLNATP   74 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcCCCC
Confidence            478999989999999999999998522111111122233      3455444455667999999987654433

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=97.99  E-value=6.6e-05  Score=60.83  Aligned_cols=72  Identities=22%  Similarity=0.379  Sum_probs=51.3

Q ss_pred             CeEEEEEEecCCC-CCeEEEEeCCc----ccC-----CC--------cee-----eecceEEEECCCCCCCCEEEEEEEE
Q psy14896        688 DKVRLECVAFGYP-VPSYNWTRRGS----PLP-----RN--------AYF-----ENFNRILTIPNVKVEDQGEYICRAS  744 (813)
Q Consensus       688 ~~v~l~C~~~g~P-~p~i~W~k~g~----~l~-----~~--------~~~-----~~~~~~L~i~~v~~~d~G~Y~C~a~  744 (813)
                      ++|+|.|.....+ ...|+|.|...    .+.     .+        .+.     ...+.+|.|.+++.+|+|.|+|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~   80 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV   80 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence            4789999987433 34899988521    110     00        011     1225689999999999999999975


Q ss_pred             -cCCCceEEEEEEEEE
Q psy14896        745 -NDRSALESSVTISIQ  759 (813)
Q Consensus       745 -N~~G~~~~~~~l~V~  759 (813)
                       .+.|+.+++..|.|.
T Consensus        81 tfP~G~~~~~~~l~~~   96 (96)
T cd05887          81 TFPLGNTQSSTTVTVL   96 (96)
T ss_pred             eCCCCCeeEEEEEEEC
Confidence             568999999999873

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=97.98  E-value=4.5e-05  Score=64.77  Aligned_cols=79  Identities=22%  Similarity=0.330  Sum_probs=50.3

Q ss_pred             CCCceeecCCCccccccEEEEeeeccCCCCeEEEeeccc--cccccccc------ccccCCCccEEee-----CCeEEEc
Q psy14896        195 QPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDY--VQDRLVAN------LIDPLSDKRFTLS-----GGNLIIN  261 (813)
Q Consensus       195 ~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~--~l~~~~~~------~~~~~~~~~~~~~-----~~~l~i~  261 (813)
                      .|..+.+.+|     ++|+|.|.+.+ +.+.+.|||...  .+.-....      ........++...     ..+|.|.
T Consensus         4 ~p~~~~v~~G-----~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~   77 (110)
T cd05899           4 SPRYLIKGRG-----QSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIK   77 (110)
T ss_pred             CCCceEEcCC-----CcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEEC
Confidence            4566777666     77999999988 778999999753  21100000      0001112344432     2357887


Q ss_pred             CCccccCCeeEEEEeecCc
Q psy14896        262 DPRQVEDRGSYHCKASNKF  280 (813)
Q Consensus       262 ~~~~~~d~G~Y~C~a~n~~  280 (813)
                      +. +.+|+|.|.|.+.+..
T Consensus        78 ~~-~~~Dsg~Y~Ca~~~~~   95 (110)
T cd05899          78 SA-EPEDSAVYLCASSLGG   95 (110)
T ss_pred             CC-ChhhCEEEEEEeeCCC
Confidence            75 8999999999998653

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=97.93  E-value=3.2e-05  Score=64.04  Aligned_cols=63  Identities=21%  Similarity=0.381  Sum_probs=45.5

Q ss_pred             CCCCCCeEEEEEEecCC--CCCeEEEEeCCc--ccC------------CCceee----ecceEEEECCCCCCCCEEEEEE
Q psy14896        683 APKAGDKVRLECVAFGY--PVPSYNWTRRGS--PLP------------RNAYFE----NFNRILTIPNVKVEDQGEYICR  742 (813)
Q Consensus       683 ~~~~G~~v~l~C~~~g~--P~p~i~W~k~g~--~l~------------~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~  742 (813)
                      .+.+|++|+|.|.+.+.  ....+.|||...  .+.            ...++.    .....|+|.+++.+|+|.|.|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~   81 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ   81 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence            46789999999999765  456799998432  111            011221    1235699999999999999999


Q ss_pred             EEc
Q psy14896        743 ASN  745 (813)
Q Consensus       743 a~N  745 (813)
                      +.+
T Consensus        82 ~~~   84 (98)
T cd04984          82 VWD   84 (98)
T ss_pred             Ecc
Confidence            875

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=97.93  E-value=1.6e-05  Score=68.45  Aligned_cols=64  Identities=27%  Similarity=0.488  Sum_probs=47.8

Q ss_pred             cCCCCCCeEEEEEEecC--CCCCeEEEEeC--CcccC-----------------CCceee----e--cceEEEECCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFG--YPVPSYNWTRR--GSPLP-----------------RNAYFE----N--FNRILTIPNVKVE  734 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g--~P~p~i~W~k~--g~~l~-----------------~~~~~~----~--~~~~L~i~~v~~~  734 (813)
                      +.+.+|++|+|.|.+.+  .+.+.+.|||.  |..+.                 ...++.    .  ....|+|.+++.+
T Consensus         8 ~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~   87 (116)
T cd04982           8 ITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEKE   87 (116)
T ss_pred             EEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCHH
Confidence            56789999999999987  67789999995  22110                 011221    1  2457999999999


Q ss_pred             CCEEEEEEEEc
Q psy14896        735 DQGEYICRASN  745 (813)
Q Consensus       735 d~G~Y~C~a~N  745 (813)
                      |+|.|.|.+..
T Consensus        88 Dsg~Y~C~~~~   98 (116)
T cd04982          88 DSATYYCAYWE   98 (116)
T ss_pred             HCEEEEEEEec
Confidence            99999999964

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=97.86  E-value=9e-05  Score=61.15  Aligned_cols=82  Identities=23%  Similarity=0.272  Sum_probs=49.0

Q ss_pred             cccEEEEeeeccCCC-CeEEEeecccccccc-------cccccccCCCccEEe-----eCCeEEEcCCccccCCeeEEEE
Q psy14896        209 LNDITLSCYAGGYPN-PSYEWFKEDYVQDRL-------VANLIDPLSDKRFTL-----SGGNLIINDPRQVEDRGSYHCK  275 (813)
Q Consensus       209 g~~v~l~C~~~g~P~-p~v~W~k~g~~l~~~-------~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~~d~G~Y~C~  275 (813)
                      |++|+|.|....... -.|.|+|....-...       ....+...-..+..+     .+.+|.|.+. +.+|+|.|+|.
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv-~~~D~G~Y~C~   79 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNV-TLEDEGCYKCI   79 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCC-ceeeeEEEEEE
Confidence            588999999754333 369999964311000       011111121222222     2456888885 99999999999


Q ss_pred             eec-CceeeEeeeeEEee
Q psy14896        276 ASN-KFGSIISESVQLAF  292 (813)
Q Consensus       276 a~n-~~g~~~s~~~~l~v  292 (813)
                      ... ..|.. +..+.|+|
T Consensus        80 ~~~~p~g~~-~~~~~L~v   96 (97)
T cd05846          80 FNTFPDGSK-SGTMCLTV   96 (97)
T ss_pred             EEeCCCCCe-eeEEEEEE
Confidence            874 44543 56676765

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd00096 Ig Immunoglobulin domain

Probab=97.84  E-value=7.6e-05  Score=57.39  Aligned_cols=59  Identities=42%  Similarity=0.740  Sum_probs=46.7

Q ss_pred             EEEEEEecCCCCCeEEEEeCCcccCCCc--------eeeecceEEEECCCCCCCCEEEEEEEEcCCC
Q psy14896        690 VRLECVAFGYPVPSYNWTRRGSPLPRNA--------YFENFNRILTIPNVKVEDQGEYICRASNDRS  748 (813)
Q Consensus       690 v~l~C~~~g~P~p~i~W~k~g~~l~~~~--------~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G  748 (813)
                      ++|.|.+.+.|.+.+.|++++.......        ........|.|.++..+|.|.|.|.+.+..+
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~   67 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAG   67 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCcC
Confidence            4799999997788999999887654332        1233456799999999999999999998763

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=97.84  E-value=0.00014  Score=59.51  Aligned_cols=80  Identities=21%  Similarity=0.355  Sum_probs=49.6

Q ss_pred             cEEEEeeecc-CCCC---eEEEeeccc--c--ccccc---ccccccCCCccEEee-----CCeEEEcCCccccCCeeEEE
Q psy14896        211 DITLSCYAGG-YPNP---SYEWFKEDY--V--QDRLV---ANLIDPLSDKRFTLS-----GGNLIINDPRQVEDRGSYHC  274 (813)
Q Consensus       211 ~v~l~C~~~g-~P~p---~v~W~k~g~--~--l~~~~---~~~~~~~~~~~~~~~-----~~~l~i~~~~~~~d~G~Y~C  274 (813)
                      +|+|.|.... .|..   +|.|.|...  .  +.-..   ...+...-..|..+.     +.+|.|.+. +.+|+|.|+|
T Consensus         2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl-~~~D~G~Y~C   80 (99)
T cd05886           2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRL-ELEDEGVYIC   80 (99)
T ss_pred             cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCC-ccccCEEEEE
Confidence            4899999864 2322   699988521  1  10000   001122223444443     478999996 8999999999


Q ss_pred             Eeec-CceeeEeeeeEEee
Q psy14896        275 KASN-KFGSIISESVQLAF  292 (813)
Q Consensus       275 ~a~n-~~g~~~s~~~~l~v  292 (813)
                      .+.+ ..|.. +..+.|.|
T Consensus        81 ~v~t~P~g~~-~~~~~L~V   98 (99)
T cd05886          81 EFATFPTGNR-ESQLNLTV   98 (99)
T ss_pred             EEEeCCCCCe-EEEEEEEE
Confidence            9998 56653 66777776

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=97.83  E-value=7.6e-05  Score=63.62  Aligned_cols=81  Identities=17%  Similarity=0.165  Sum_probs=46.4

Q ss_pred             CCceeecCCCccccccEEEEeeeccCC----CCeEEEeec---ccc---cccccc-c--ccccCCCccEEee------CC
Q psy14896        196 PTDVVFDLSKRSILNDITLSCYAGGYP----NPSYEWFKE---DYV---QDRLVA-N--LIDPLSDKRFTLS------GG  256 (813)
Q Consensus       196 p~~~~v~~g~~~~g~~v~l~C~~~g~P----~p~v~W~k~---g~~---l~~~~~-~--~~~~~~~~~~~~~------~~  256 (813)
                      |..+.+.+|     ++++|.|.....+    ...|.||+.   +..   +-.... .  .....-..|..+.      +.
T Consensus         5 ~~~v~~~~G-----~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~   79 (115)
T cd05880           5 SKEVEAVNG-----TDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDA   79 (115)
T ss_pred             CceEEEEcC-----CCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCce
Confidence            455666666     6699999985432    246999852   111   100000 0  0001111233221      34


Q ss_pred             eEEEcCCccccCCeeEEEEeecCcee
Q psy14896        257 NLIINDPRQVEDRGSYHCKASNKFGS  282 (813)
Q Consensus       257 ~l~i~~~~~~~d~G~Y~C~a~n~~g~  282 (813)
                      +|.|.+. +.+|+|.|+|.+.|..+.
T Consensus        80 sL~I~~v-~~~D~G~Y~C~v~~~~~~  104 (115)
T cd05880          80 SILIWQL-QPTDNGTYTCQVKNPPDV  104 (115)
T ss_pred             EEEEeeC-ChhhCEEEEEEEEeCCCC
Confidence            5888885 999999999999986553

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.79  E-value=0.00012  Score=62.71  Aligned_cols=91  Identities=23%  Similarity=0.384  Sum_probs=55.7

Q ss_pred             CCceeecCCCccccccEEEEeeec-cCCCCeEEEeeccc-----ccc----cccccccccCCCccEEee-C-----CeEE
Q psy14896        196 PTDVVFDLSKRSILNDITLSCYAG-GYPNPSYEWFKEDY-----VQD----RLVANLIDPLSDKRFTLS-G-----GNLI  259 (813)
Q Consensus       196 p~~~~v~~g~~~~g~~v~l~C~~~-g~P~p~v~W~k~g~-----~l~----~~~~~~~~~~~~~~~~~~-~-----~~l~  259 (813)
                      |..+.+.+|     +++.|.|... ......+.|++...     .+.    .............+..+. +     .+|.
T Consensus         8 ~~~v~~~~G-----~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~   82 (114)
T PF07686_consen    8 PSPVTVQEG-----ESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLT   82 (114)
T ss_dssp             ESEEEEETT-----SEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEE
T ss_pred             CCeEEEecC-----CCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEE
Confidence            455666666     6799999998 55667999999654     111    000111222223333322 1     2588


Q ss_pred             EcCCccccCCeeEEEEeecCceeeEeeeeEEee
Q psy14896        260 INDPRQVEDRGSYHCKASNKFGSIISESVQLAF  292 (813)
Q Consensus       260 i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v  292 (813)
                      |.+. +.+|+|.|.|.+...........+.|.|
T Consensus        83 i~~l-~~~DsG~Y~C~v~~~~~~~~~~~~~L~V  114 (114)
T PF07686_consen   83 IKNL-QPSDSGTYFCQVSTSNEQSFGNGTKLTV  114 (114)
T ss_dssp             ESSE-SGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred             ECCC-CcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence            8885 9999999999999774443345555554

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.78  E-value=4.6e-05  Score=65.46  Aligned_cols=77  Identities=23%  Similarity=0.426  Sum_probs=53.0

Q ss_pred             cCCCCCCeEEEEEEec-CCCCCeEEEEeCCc-----ccC---CC-c----------e--ee----ecceEEEECCCCCCC
Q psy14896        682 EAPKAGDKVRLECVAF-GYPVPSYNWTRRGS-----PLP---RN-A----------Y--FE----NFNRILTIPNVKVED  735 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~-g~P~p~i~W~k~g~-----~l~---~~-~----------~--~~----~~~~~L~i~~v~~~d  735 (813)
                      ..+.+|+++.|.|... ......+.|++...     .+.   .. .          +  +.    ....+|.|.+++.+|
T Consensus        11 v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~D   90 (114)
T PF07686_consen   11 VTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPSD   90 (114)
T ss_dssp             EEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGGG
T ss_pred             EEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcCc
Confidence            5678999999999998 55566999999433     111   00 0          0  01    123479999999999


Q ss_pred             CEEEEEEEEcC-CCceEEEEEEEE
Q psy14896        736 QGEYICRASND-RSALESSVTISI  758 (813)
Q Consensus       736 ~G~Y~C~a~N~-~G~~~~~~~l~V  758 (813)
                      +|.|.|.+... .+.....+.|.|
T Consensus        91 sG~Y~C~v~~~~~~~~~~~~~L~V  114 (114)
T PF07686_consen   91 SGTYFCQVSTSNEQSFGNGTKLTV  114 (114)
T ss_dssp             EEEEEEEEEESSEEEEEEEEEEEE
T ss_pred             CEEEEEEEEECCCCEECCcEEEEC
Confidence            99999999986 233344555554

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=97.78  E-value=6.1e-05  Score=63.52  Aligned_cols=70  Identities=19%  Similarity=0.252  Sum_probs=48.7

Q ss_pred             eeecCCCeEEEecCCCCCCcceEEEeeccc---ccc------------ccCCccEEEccC-----ccEEEeeeeecCCee
Q psy14896        306 IGNQNWGKAMFCDPPTNYPGVNYYWARDYF---PNF------------VEEDKRVFVSYD-----GALYFSALEQIDAGN  365 (813)
Q Consensus       306 ~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~---~~~------------~~~~~~~~~~~~-----~~L~i~~v~~~D~G~  365 (813)
                      .+.+|+.++|.|.+....+...+.|+|...   +..            .....|+.+..+     .+|.|.+++.+|+|.
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~   81 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV   81 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            456899999999974333678999998543   100            112344444332     279999999999999


Q ss_pred             eEEEEeeecc
Q psy14896        366 YSCNVQSKVS  375 (813)
Q Consensus       366 Y~C~a~n~~g  375 (813)
                      |.|.+.+..+
T Consensus        82 Y~C~v~~~~~   91 (105)
T cd00099          82 YYCAVSLSGG   91 (105)
T ss_pred             EEEEEecCCC
Confidence            9999987653

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=97.75  E-value=5.6e-05  Score=62.65  Aligned_cols=64  Identities=22%  Similarity=0.331  Sum_probs=45.9

Q ss_pred             CCCCCCeEEEEEEecC-CCCCeEEEEeCCcc-----cC--------CCceee------ecceEEEECCCCCCCCEEEEEE
Q psy14896        683 APKAGDKVRLECVAFG-YPVPSYNWTRRGSP-----LP--------RNAYFE------NFNRILTIPNVKVEDQGEYICR  742 (813)
Q Consensus       683 ~~~~G~~v~l~C~~~g-~P~p~i~W~k~g~~-----l~--------~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~  742 (813)
                      .+.+|++|+|.|.... .+...+.|+|....     |.        ...++.      .....|+|.+++.+|+|.|.|.
T Consensus         3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   82 (98)
T cd05716           3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCG   82 (98)
T ss_pred             EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence            4678999999999875 35568999986421     10        011121      1235799999999999999999


Q ss_pred             EEcC
Q psy14896        743 ASND  746 (813)
Q Consensus       743 a~N~  746 (813)
                      +.+.
T Consensus        83 ~~~~   86 (98)
T cd05716          83 VGDD   86 (98)
T ss_pred             cccC
Confidence            9875

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=97.75  E-value=0.00014  Score=60.82  Aligned_cols=83  Identities=19%  Similarity=0.332  Sum_probs=51.2

Q ss_pred             cccEEEEeeeccCC-------CCeEEEeecc-----cccc----cccccccccCCCccEEee-------CCeEEEcCCcc
Q psy14896        209 LNDITLSCYAGGYP-------NPSYEWFKED-----YVQD----RLVANLIDPLSDKRFTLS-------GGNLIINDPRQ  265 (813)
Q Consensus       209 g~~v~l~C~~~g~P-------~p~v~W~k~g-----~~l~----~~~~~~~~~~~~~~~~~~-------~~~l~i~~~~~  265 (813)
                      |++|.|.|...-.|       .+.|.|+|..     +.+.    ......+...-..|..+.       +-+|.|.+. +
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv-~   80 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRL-R   80 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCC-C
Confidence            57799999965323       3689999862     1110    000011233444455553       235778775 8


Q ss_pred             ccCCeeEEEEeecCceeeEeeeeEEeee
Q psy14896        266 VEDRGSYHCKASNKFGSIISESVQLAFG  293 (813)
Q Consensus       266 ~~d~G~Y~C~a~n~~g~~~s~~~~l~v~  293 (813)
                      .+|+|.|.|.+....... ...+.|.|.
T Consensus        81 ~~D~G~Y~C~v~~g~~~~-~~~v~L~V~  107 (110)
T cd05902          81 YSDSGTYRCEVVLGINDE-QDTVPLEVT  107 (110)
T ss_pred             HHHCEEEEEEEEECCccc-EEEEEEEEE
Confidence            999999999999755333 556777764

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=97.74  E-value=0.00021  Score=61.21  Aligned_cols=81  Identities=20%  Similarity=0.267  Sum_probs=47.0

Q ss_pred             CCceeecCCCccccccEEEEeeeccCC----CCeEEEeecccc------cccc-cccc---cccCCCccEEee------C
Q psy14896        196 PTDVVFDLSKRSILNDITLSCYAGGYP----NPSYEWFKEDYV------QDRL-VANL---IDPLSDKRFTLS------G  255 (813)
Q Consensus       196 p~~~~v~~g~~~~g~~v~l~C~~~g~P----~p~v~W~k~g~~------l~~~-~~~~---~~~~~~~~~~~~------~  255 (813)
                      |..+.+.+|     ++|+|.|......    ...|.||+....      +-.. ....   ....-..|+.+.      +
T Consensus         5 p~~v~v~~G-----~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~   79 (116)
T cd05715           5 PREVYAVNG-----SDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKD   79 (116)
T ss_pred             CCeEEEEcC-----CCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCe
Confidence            455666666     7799999985422    256999874321      0000 0000   011111233332      2


Q ss_pred             CeEEEcCCccccCCeeEEEEeecCcee
Q psy14896        256 GNLIINDPRQVEDRGSYHCKASNKFGS  282 (813)
Q Consensus       256 ~~l~i~~~~~~~d~G~Y~C~a~n~~g~  282 (813)
                      .+|.|.+. +.+|+|.|.|.+.|..+.
T Consensus        80 ~sL~I~~v-~~~D~G~Y~C~v~~~~~~  105 (116)
T cd05715          80 ASIVIHNL-QFTDNGTYTCDVKNPPDI  105 (116)
T ss_pred             eEEEEeeC-CcccCEEEEEEEEeCCCC
Confidence            45788775 999999999999986553

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=97.74  E-value=0.00024  Score=57.63  Aligned_cols=80  Identities=20%  Similarity=0.299  Sum_probs=49.9

Q ss_pred             cEEEEeeeccC-CCCeEEEeeccc----ccccc---cccccccCCCccEEee-----CCeEEEcCCccccCCeeEEEEee
Q psy14896        211 DITLSCYAGGY-PNPSYEWFKEDY----VQDRL---VANLIDPLSDKRFTLS-----GGNLIINDPRQVEDRGSYHCKAS  277 (813)
Q Consensus       211 ~v~l~C~~~g~-P~p~v~W~k~g~----~l~~~---~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~~d~G~Y~C~a~  277 (813)
                      +++|.|..... ...+|+|.|-..    .+..-   .+..+...-..|..+.     +.+|.|.+. +.+|+|.|+|.+.
T Consensus         2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv-~~~D~G~Y~C~v~   80 (96)
T cd05887           2 NVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENV-GFSDIGVYICKAV   80 (96)
T ss_pred             CEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCC-CccccEEEEEEEE
Confidence            48999998642 344899988532    11100   0111222333455543     678999986 8999999999986


Q ss_pred             -cCceeeEeeeeEEee
Q psy14896        278 -NKFGSIISESVQLAF  292 (813)
Q Consensus       278 -n~~g~~~s~~~~l~v  292 (813)
                       ...|.. +.++.|+|
T Consensus        81 tfP~G~~-~~~~~l~~   95 (96)
T cd05887          81 TFPLGNT-QSSTTVTV   95 (96)
T ss_pred             eCCCCCe-eEEEEEEE
Confidence             466655 55566665

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=97.72  E-value=0.00011  Score=63.22  Aligned_cols=77  Identities=19%  Similarity=0.421  Sum_probs=47.9

Q ss_pred             CCceeecCCCccccccEEEEeeecc--CCCCeEEEeecc--ccccccccc-------ccccCCCccEEee--C----CeE
Q psy14896        196 PTDVVFDLSKRSILNDITLSCYAGG--YPNPSYEWFKED--YVQDRLVAN-------LIDPLSDKRFTLS--G----GNL  258 (813)
Q Consensus       196 p~~~~v~~g~~~~g~~v~l~C~~~g--~P~p~v~W~k~g--~~l~~~~~~-------~~~~~~~~~~~~~--~----~~l  258 (813)
                      |..+.+.+|     ++|+|.|.+.+  .+.+.+.|||..  .........       ........++...  .    .+|
T Consensus         5 p~~~~~~~G-----~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   79 (116)
T cd04982           5 QLSITREES-----KSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTL   79 (116)
T ss_pred             CCeEEeCCC-----CCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEE
Confidence            455666555     77999999977  678899999963  221110000       0011123455432  1    247


Q ss_pred             EEcCCccccCCeeEEEEeec
Q psy14896        259 IINDPRQVEDRGSYHCKASN  278 (813)
Q Consensus       259 ~i~~~~~~~d~G~Y~C~a~n  278 (813)
                      .|.+. +.+|+|.|.|.+..
T Consensus        80 ~I~~~-~~~Dsg~Y~C~~~~   98 (116)
T cd04982          80 TIQNL-EKEDSATYYCAYWE   98 (116)
T ss_pred             EEEEC-CHHHCEEEEEEEec
Confidence            77775 89999999999874

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.72  E-value=7e-05  Score=54.12  Aligned_cols=52  Identities=21%  Similarity=0.359  Sum_probs=38.8

Q ss_pred             CCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcC
Q psy14896        685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASND  746 (813)
Q Consensus       685 ~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~  746 (813)
                      ..|.+|+|+|...+.   .+.|++|+..+..+      +..+.+.+-. +++|.|.|.+.+.
T Consensus         5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~------~~~~~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692           5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGS------DEKYLSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             EeccEEEEECCCCCC---CceEEeCCccCCCC------CceEEeeccC-CCCceEEEEeCCC
Confidence            358999999987633   39999999766542      3355566666 9999999999653

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=97.71  E-value=0.00017  Score=59.65  Aligned_cols=72  Identities=21%  Similarity=0.331  Sum_probs=43.7

Q ss_pred             cccccEEEEeeeccC--CCCeEEEeeccc--ccccccccc--cccCCCccEEee----CCeEEEcCCccccCCeeEEEEe
Q psy14896        207 SILNDITLSCYAGGY--PNPSYEWFKEDY--VQDRLVANL--IDPLSDKRFTLS----GGNLIINDPRQVEDRGSYHCKA  276 (813)
Q Consensus       207 ~~g~~v~l~C~~~g~--P~p~v~W~k~g~--~l~~~~~~~--~~~~~~~~~~~~----~~~l~i~~~~~~~d~G~Y~C~a  276 (813)
                      ++|++|+|.|.+.+.  ....+.|||...  .........  .......++...    ..+|.|.+. +.+|+|.|.|.+
T Consensus         4 ~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~-~~~Dsg~Y~C~~   82 (98)
T cd04984           4 SPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGA-QTEDEADYYCQV   82 (98)
T ss_pred             CCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCC-ChhhCEEEEEEE
Confidence            356889999999764  556899999753  111100000  000112344432    124677775 899999999998


Q ss_pred             ecC
Q psy14896        277 SNK  279 (813)
Q Consensus       277 ~n~  279 (813)
                      .+.
T Consensus        83 ~~~   85 (98)
T cd04984          83 WDS   85 (98)
T ss_pred             ccC
Confidence            753

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=97.71  E-value=0.00019  Score=64.12  Aligned_cols=85  Identities=14%  Similarity=0.222  Sum_probs=54.1

Q ss_pred             cccEEEEeeec-cCCCCeEEEeeccccccccccc--ccccCCCccEEe-----eCCeEEEcCCccccCCeeEEEEeec-C
Q psy14896        209 LNDITLSCYAG-GYPNPSYEWFKEDYVQDRLVAN--LIDPLSDKRFTL-----SGGNLIINDPRQVEDRGSYHCKASN-K  279 (813)
Q Consensus       209 g~~v~l~C~~~-g~P~p~v~W~k~g~~l~~~~~~--~~~~~~~~~~~~-----~~~~l~i~~~~~~~d~G~Y~C~a~n-~  279 (813)
                      |++|.|.|... +...+.|.|+|..+.+..-...  .+...-..|..+     .+.+|.|.+. +.+|+|.|+|...- .
T Consensus        30 ge~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknV-t~sDeGcY~C~F~tfp  108 (189)
T PHA02987         30 HVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNV-SLKDNGCYTCIFNTLL  108 (189)
T ss_pred             CCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeC-ChhhCeEEEEEEEecC
Confidence            37799999984 6667899999986544311111  111112235543     4567888885 89999999999863 3


Q ss_pred             ceeeEeeeeEEeeee
Q psy14896        280 FGSIISESVQLAFGF  294 (813)
Q Consensus       280 ~g~~~s~~~~l~v~~  294 (813)
                      .|...+..+-|+|..
T Consensus       109 ~G~~~~gt~CLtVt~  123 (189)
T PHA02987        109 SKNNEKGVVCLNVTT  123 (189)
T ss_pred             CCCCceeEEEEEEEc
Confidence            342335566677643

>KOG0613|consensus

Probab=97.69  E-value=0.00087  Score=76.98  Aligned_cols=215  Identities=8%  Similarity=-0.079  Sum_probs=133.3

Q ss_pred             ccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEEEEeeecCccccCceeeEE
Q psy14896        581 NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLK  660 (813)
Q Consensus       581 ~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~  660 (813)
                      ..+....|.|.+ ...+.+.+.|+.+......   .   .....+..|.+....+.+.|+|...+..|........ ...
T Consensus       242 ~e~s~~~i~~~l-~~~~G~~~~~~~~~l~e~~---~---~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~-~~~  313 (1205)
T KOG0613|consen  242 LEASDRKIQLTL-RAPRGPYSAHILGYLIEQR---K---HKGGNTKTIQNDGPEPELSWTVADKRQGCQDRFKVTE-EAP  313 (1205)
T ss_pred             cchhheeeeEEe-ecCCCchHHHHhcchhhhc---c---cCCCccccccccCCccccceeeecccCCcccceeeeE-Eee
Confidence            344455677777 5667777777776532111   0   1122246777777888888888888877765433111 111


Q ss_pred             Ec---cCCCccc------cccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCe-EEEEeCCcccCCCc------eeeecce
Q psy14896        661 VF---PHSNFQQ------LKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPS-YNWTRRGSPLPRNA------YFENFNR  724 (813)
Q Consensus       661 v~---~~p~~~~------~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~-i~W~k~g~~l~~~~------~~~~~~~  724 (813)
                      +.   ..|....      ...|..........+..+..+++.|...+.+.|. ++||+++.....+.      .......
T Consensus       314 i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~  393 (1205)
T KOG0613|consen  314 IGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSH  393 (1205)
T ss_pred             ccccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcCCchheeecccccccccccccccccccccCc
Confidence            11   1111100      1122233333445678888999999999999986 99999876554432      1122345


Q ss_pred             EEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCC-c----ccccCCceeecCC--CeEEEEEEEcccC--CceEEE
Q psy14896        725 ILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEP-N----FTIPLTDKHMDNQ--ADLTWTCEAFGVP--DVTYSW  795 (813)
Q Consensus       725 ~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P-~----~~~~~~~~~~~~g--~~~~l~C~~~g~p--~~~v~W  795 (813)
                      .+.|..+...+.+.|.|.|.|..|........+|...+ .    +...........+  +.+.+.|.+.++|  ...++|
T Consensus       394 ~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt  473 (1205)
T KOG0613|consen  394 TYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPGTQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTT  473 (1205)
T ss_pred             chhhhhcCcccccccccceeccCCcccccchhhcccccCCCCCccccccccccccccCCcccccccCCCCccccceeEee
Confidence            79999999999999999999999987766655555432 2    2222233333333  7788999998887  455777


Q ss_pred             EECCEecc
Q psy14896        796 FRNGELGH  803 (813)
Q Consensus       796 ~k~g~~l~  803 (813)
                      ++++-+..
T Consensus       474 ~~~~~~~s  481 (1205)
T KOG0613|consen  474 IKDGLPLS  481 (1205)
T ss_pred             ccCCcccc
Confidence            77776553

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.68  E-value=0.00012  Score=59.36  Aligned_cols=63  Identities=27%  Similarity=0.544  Sum_probs=45.3

Q ss_pred             CCeEEEEEEec-CCCCCeEEEEeCCcccCCCc---------eeeecceEEEECCCCCCCCEEEEEEEEcCCCc
Q psy14896        687 GDKVRLECVAF-GYPVPSYNWTRRGSPLPRNA---------YFENFNRILTIPNVKVEDQGEYICRASNDRSA  749 (813)
Q Consensus       687 G~~v~l~C~~~-g~P~p~i~W~k~g~~l~~~~---------~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~  749 (813)
                      |+.+.|+|.+. |+|+|.|+|+.++..+....         ......++|.+..-..+|...++|.|.|..-+
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~   86 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS   86 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence            78999999776 89999999999998872111         11122356877665556777999999997544

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=97.68  E-value=0.00034  Score=58.54  Aligned_cols=83  Identities=18%  Similarity=0.284  Sum_probs=51.6

Q ss_pred             cccEEEEeeeccCC-----------CCeEEEeec-----cccccccc-------ccccccCCCccEEee-------CCeE
Q psy14896        209 LNDITLSCYAGGYP-----------NPSYEWFKE-----DYVQDRLV-------ANLIDPLSDKRFTLS-------GGNL  258 (813)
Q Consensus       209 g~~v~l~C~~~g~P-----------~p~v~W~k~-----g~~l~~~~-------~~~~~~~~~~~~~~~-------~~~l  258 (813)
                      |++++|.|...-.|           .+.|+|+|-     |....+..       ...+......|..+.       +-+|
T Consensus         2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL   81 (117)
T cd05901           2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL   81 (117)
T ss_pred             CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence            46799999997433           238999985     11110000       001122333444442       3468


Q ss_pred             EEcCCccccCCeeEEEEeecCceeeEeeeeEEeee
Q psy14896        259 IINDPRQVEDRGSYHCKASNKFGSIISESVQLAFG  293 (813)
Q Consensus       259 ~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~  293 (813)
                      .|.+. +.+|+|.|+|.+.+..... ...+.|.|.
T Consensus        82 ~i~~v-~~sD~G~Y~C~V~~g~~~~-~~~v~L~V~  114 (117)
T cd05901          82 TIVKL-RASDAGVYRCEVMHGIEDT-QDTVSLDVS  114 (117)
T ss_pred             EEccc-ccccCEEEEEEEEECCccc-EEEEEEEEE
Confidence            88885 8999999999999876655 566777764

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=97.68  E-value=0.00027  Score=58.56  Aligned_cols=80  Identities=20%  Similarity=0.320  Sum_probs=48.6

Q ss_pred             cEEEEeeeccCC---CCeEEEeecccc-----ccccc---ccccccCCCccEEee------CCeEEEcCCccccCCeeEE
Q psy14896        211 DITLSCYAGGYP---NPSYEWFKEDYV-----QDRLV---ANLIDPLSDKRFTLS------GGNLIINDPRQVEDRGSYH  273 (813)
Q Consensus       211 ~v~l~C~~~g~P---~p~v~W~k~g~~-----l~~~~---~~~~~~~~~~~~~~~------~~~l~i~~~~~~~d~G~Y~  273 (813)
                      +|+|.|.....+   ...|.|+|....     +.-..   +.........|..+.      +.+|.|.+. +.+|+|.|.
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv-~~sD~GtY~   80 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNA-VQADEGKYK   80 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecC-ccccceEEE
Confidence            489999986433   348999995321     11000   011111112343432      557888886 899999999


Q ss_pred             EEeec-CceeeEeeeeEEee
Q psy14896        274 CKASN-KFGSIISESVQLAF  292 (813)
Q Consensus       274 C~a~n-~~g~~~s~~~~l~v  292 (813)
                      |.+.+ ..|.. +..+.|.|
T Consensus        81 C~v~~~p~g~~-~~~~~L~V   99 (100)
T cd05888          81 CRVITFPAGNF-EAELVLTV   99 (100)
T ss_pred             EEEEeCCCCCe-eeEEEEEe
Confidence            99997 55654 56666665

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.64  E-value=0.00023  Score=55.30  Aligned_cols=57  Identities=21%  Similarity=0.480  Sum_probs=41.0

Q ss_pred             EEEEEEecCC-CC-CeEEEEeCCcccCCCcee----------eecceEEEECCCCCCCCEEEEEEEEcC
Q psy14896        690 VRLECVAFGY-PV-PSYNWTRRGSPLPRNAYF----------ENFNRILTIPNVKVEDQGEYICRASND  746 (813)
Q Consensus       690 v~l~C~~~g~-P~-p~i~W~k~g~~l~~~~~~----------~~~~~~L~i~~v~~~d~G~Y~C~a~N~  746 (813)
                      ++|.|.+.|+ |+ ..|+|+|||+++..+...          ....+.|.|.....++...|+|+|.+.
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~   70 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE   70 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence            6899999986 54 589999999975443211          111345777666777788999999875

>PHA03269 envelope glycoprotein C; Provisional

Probab=97.64  E-value=0.0082  Score=61.40  Aligned_cols=197  Identities=16%  Similarity=0.186  Sum_probs=114.1

Q ss_pred             eEEEeCCCCCCCCceEEEEEEcCc--eeEEeecEEEEEeecccccccCCCceeccCCCceEEeCCCCCCCc--cEEEEcc
Q psy14896        530 NLIINDPRQVEDRGSYHCKASNKF--GSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPG--VNYYWAR  605 (813)
Q Consensus       530 ~l~i~~~~~~~d~G~Y~C~a~n~~--g~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~v~W~k  605 (813)
                      .|.|.++ ...++|.|.=+..+..  .......+.+.+..+|.+.  ..+.-+.+|++..-.|.+..-+|+  ..++|++
T Consensus       290 pL~I~sl-taATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVs--V~p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~  366 (566)
T PHA03269        290 SLHILSL-DASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNIT--VIGDPVLLGNPYAAYCKVNKYYPPHSVIVKWTS  366 (566)
T ss_pred             ceEEeec-ccccCceEEEEEecCCCCceeeeeEEEEEEecCCCcc--ccCCccccCCCceEEEEeeeecCCCceEEEEEe
Confidence            5899997 9999999987765432  1222344566666666544  445557889999999999666665  5699999


Q ss_pred             CCCCCcccC-CCeEEEeeCccEEEEe-ecc-cC-Ce-----eEEEEEEeeecCcccc--CceeeEEEccCCCccccccCC
Q psy14896        606 DYFPNFVEE-DKRVFVSYDGALYFSA-LEQ-ID-AG-----NYSCNVQSKVSDTGRN--GPFFPLKVFPHSNFQQLKFPN  674 (813)
Q Consensus       606 ~~~~~~~~~-~~~~~~~~~~~L~i~~-~~~-~d-~G-----~Y~C~a~n~~g~~~~~--~~~~~l~v~~~p~~~~~~~p~  674 (813)
                      ||.++.... ........+|.++..+ ++. ++ .+     +.+|.+.=-.+....+  .....-.|..+|.+.      
T Consensus       367 ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY~~PtIS------  440 (566)
T PHA03269        367 NFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYPFPNVS------  440 (566)
T ss_pred             CCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCccccCCeEE------
Confidence            987754211 1223445566543222 222 22 34     4599986443332222  222334455554332      


Q ss_pred             CCCCCCCcCCCCCCeEEEEEEecCCCC--CeEEEEeCCcccCCCceee-----ecceEEEECC---CCCCCC-EEEEEEE
Q psy14896        675 NFPKTFPEAPKAGDKVRLECVAFGYPV--PSYNWTRRGSPLPRNAYFE-----NFNRILTIPN---VKVEDQ-GEYICRA  743 (813)
Q Consensus       675 ~~~~~~~~~~~~G~~v~l~C~~~g~P~--p~i~W~k~g~~l~~~~~~~-----~~~~~L~i~~---v~~~d~-G~Y~C~a  743 (813)
                             +....|.   -.|.+.-.|.  ..+.|+-++..........     ...+...|.+   +..+|. -+|+|++
T Consensus       441 -------m~FedG~---AVCtA~CVP~~~V~l~WlVgD~p~~~~~t~itG~C~ehPGLVNLRS~~pLS~~dgpveYTCrL  510 (566)
T PHA03269        441 -------IEIIDGH---IVCLAKCVPRGVVHFNWWINDIPIEHENSEILGVCDNNKRFVNLQSSCDTSELDGPITYSCHL  510 (566)
T ss_pred             -------EEEeCCE---EEEecccccCCCceEEEEecCCCCCCccceeeccCCCCCCceeecccccccccCCceeEEEEE
Confidence                   2233343   3477777775  4899998877644333221     1123455655   344442 4999998


Q ss_pred             Ec
Q psy14896        744 SN  745 (813)
Q Consensus       744 ~N  745 (813)
                      .-
T Consensus       511 ~G  512 (566)
T PHA03269        511 DG  512 (566)
T ss_pred             ee
Confidence            63

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.62  E-value=0.00042  Score=58.10  Aligned_cols=64  Identities=19%  Similarity=0.439  Sum_probs=43.3

Q ss_pred             CCCCCCeEEEEEEecCC-CC-CeEEEEeCCcccCCCce-e--eec------ceEEEECCCCCCCCE-EEEEEEEcCC
Q psy14896        683 APKAGDKVRLECVAFGY-PV-PSYNWTRRGSPLPRNAY-F--ENF------NRILTIPNVKVEDQG-EYICRASNDR  747 (813)
Q Consensus       683 ~~~~G~~v~l~C~~~g~-P~-p~i~W~k~g~~l~~~~~-~--~~~------~~~L~i~~v~~~d~G-~Y~C~a~N~~  747 (813)
                      .+..|+.++|.|.+.|+ |. ..|+|+|||+.+..... .  ..+      .+.|.+.. ...|.| .|+|.+.+..
T Consensus        17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~   92 (111)
T cd05772          17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT   92 (111)
T ss_pred             ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence            45578899999999975 53 58999999998864311 1  111      23466654 444545 5999999864

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>KOG1480|consensus

Probab=97.61  E-value=2.4e-05  Score=83.57  Aligned_cols=174  Identities=19%  Similarity=0.321  Sum_probs=104.5

Q ss_pred             ccccCeEEEEEeeccCCC----cEEEeeccccccceeccccCCCCCceEEeeCCeEEEeCCCCCCCCc---eE--EEEEE
Q psy14896        480 SILNDITLSCYAGGYPNP----SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG---SY--HCKAS  550 (813)
Q Consensus       480 ~~g~~~~l~C~~~g~p~~----~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G---~Y--~C~a~  550 (813)
                      ..+.++.|.|.+...+..    .=.|..+.+....     .............-.+.|... ..++.|   .|  .|.|.
T Consensus        37 i~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~-----~~~d~tsg~~~~~~si~Isr~-~v~~~~~~~d~~cQc~a~  110 (909)
T KOG1480|consen   37 IKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKL-----EGTDETSGLGVREVSIDISRQ-QVETSGGPEDYWCQCVAW  110 (909)
T ss_pred             ecCCCccceecCCcccccccccChhhhcCccceee-----eccCcccceeEEeeeeeeehh-hhhcccCccceeeeeeee
Confidence            346788889988654433    2346665533110     000111111111223333331 223322   34  56677


Q ss_pred             cCceeEEeecEEEEEeeccc-ccccCCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCccEEEE
Q psy14896        551 NKFGSIISESVQLAFGFIGE-FNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFS  629 (813)
Q Consensus       551 n~~g~~~s~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~  629 (813)
                      ...|...+....+.+.+.-. |...+.-..+..+....|.|..+.+.|...++|+|++..  +..+.......++.|.|.
T Consensus       111 ~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~--~~pd~n~~~~~d~~li~~  188 (909)
T KOG1480|consen  111 SDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVV--IDPDANVIRASDHNLIIS  188 (909)
T ss_pred             cCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCC--CCccccchhhhcCCcccc
Confidence            77775544444444333332 222233345666777899999989999999999999875  333666777788899999


Q ss_pred             eecccCCeeEEEEEEeeecCccccCceeeEEE
Q psy14896        630 ALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKV  661 (813)
Q Consensus       630 ~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v  661 (813)
                      .+...|.|+|+|+|.|.++........+.+.|
T Consensus       189 ~arlsd~~nytc~a~ni~~~r~~~~~~v~vyv  220 (909)
T KOG1480|consen  189 QARLSDSGNYTCEATNIVAKRKSDPATVQVYV  220 (909)
T ss_pred             chhhhhcccceeeeehhhccccccceEEEEEE
Confidence            99999999999999999876554443344443

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.59  E-value=0.0006  Score=55.35  Aligned_cols=70  Identities=21%  Similarity=0.362  Sum_probs=47.3

Q ss_pred             CeEEEEEEecCC-CCCeEEEEeCCc----ccC-----CC--------ceee-----ecceEEEECCCCCCCCEEEEEEEE
Q psy14896        688 DKVRLECVAFGY-PVPSYNWTRRGS----PLP-----RN--------AYFE-----NFNRILTIPNVKVEDQGEYICRAS  744 (813)
Q Consensus       688 ~~v~l~C~~~g~-P~p~i~W~k~g~----~l~-----~~--------~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~  744 (813)
                      +.++|.|..... ....|+|.|...    .+.     .+        ++..     ..+.+|+|.+++.+|+|.|+|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~   80 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV   80 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence            468999998632 345899998532    110     00        1111     124689999999999999999998


Q ss_pred             cC-CCceEEEEEEE
Q psy14896        745 ND-RSALESSVTIS  757 (813)
Q Consensus       745 N~-~G~~~~~~~l~  757 (813)
                      +- .|..++.+.|.
T Consensus        81 t~P~g~~~~~i~~~   94 (96)
T cd05889          81 TYPQGSWEKVIEVV   94 (96)
T ss_pred             eCCCCCeEEEEEEE
Confidence            75 67777766653

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.59  E-value=0.00015  Score=58.80  Aligned_cols=70  Identities=21%  Similarity=0.448  Sum_probs=42.6

Q ss_pred             ccEEEEeee-ccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCce
Q psy14896        210 NDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFG  281 (813)
Q Consensus       210 ~~v~l~C~~-~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g  281 (813)
                      +.+.|+|.+ .|+|.|.|+|+.++..+............+..+.. ..+|.+... ..++...++|.|.+...
T Consensus        15 ~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~-~S~l~~~~~-~~~~~~~~~C~~~~~~~   85 (89)
T PF08205_consen   15 EEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTV-SSTLTLTPT-REDHGKTLTCRASHPAL   85 (89)
T ss_dssp             EEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEE-EEEEEEETT-GGGTTEEEEEEEEETTC
T ss_pred             eEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceE-EEEEEEEcC-hHHCCeEEEEEEECCcc
Confidence            679999988 57999999999999876211111111122222221 224555443 45677789999998654

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.59  E-value=0.00021  Score=55.57  Aligned_cols=67  Identities=21%  Similarity=0.372  Sum_probs=39.2

Q ss_pred             EEEEeeeccC-CC-CeEEEeecccccccccc-cccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCc
Q psy14896        212 ITLSCYAGGY-PN-PSYEWFKEDYVQDRLVA-NLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKF  280 (813)
Q Consensus       212 v~l~C~~~g~-P~-p~v~W~k~g~~l~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~  280 (813)
                      ++|.|.+.|. |. ..|+|+|||+++..... ....+..+..+.. ...|.+... ..++...|+|+|.+..
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~-~s~L~v~~~-~~~~~~~~tC~V~H~~   71 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFL-SSYLTVSAS-TWESGDTYTCQVTHEG   71 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEE-EEEEEEccc-cCCCCCEEEEEEEEcC
Confidence            7899999884 65 69999999986432211 1111112222222 223444332 4567789999998653

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=97.55  E-value=0.00025  Score=60.94  Aligned_cols=64  Identities=20%  Similarity=0.380  Sum_probs=46.3

Q ss_pred             cCCCCCCeEEEEEEecCC-CCCeEEEEeC--Cccc------------CCCceee------ecceEEEECCCCCCCCEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGY-PVPSYNWTRR--GSPL------------PRNAYFE------NFNRILTIPNVKVEDQGEYI  740 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~-P~p~i~W~k~--g~~l------------~~~~~~~------~~~~~L~i~~v~~~d~G~Y~  740 (813)
                      +.+.+|++|+|.|..... ....+.|||.  +..+            ....++.      .....|+|.+++.+|+|.|.
T Consensus         9 v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~   88 (116)
T cd07706           9 VSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKYF   88 (116)
T ss_pred             eEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEEE
Confidence            567899999999998753 4568999984  2211            0012222      12357999999999999999


Q ss_pred             EEEEc
Q psy14896        741 CRASN  745 (813)
Q Consensus       741 C~a~N  745 (813)
                      |.+.+
T Consensus        89 C~~~~   93 (116)
T cd07706          89 CALST   93 (116)
T ss_pred             EEEEC
Confidence            99985

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=97.54  E-value=0.00015  Score=61.07  Aligned_cols=63  Identities=27%  Similarity=0.430  Sum_probs=43.6

Q ss_pred             CCCCCCeEEEEEEecCCC-CCeEEEEeCCcc---c--------CC-----------Cceee------ecceEEEECCCCC
Q psy14896        683 APKAGDKVRLECVAFGYP-VPSYNWTRRGSP---L--------PR-----------NAYFE------NFNRILTIPNVKV  733 (813)
Q Consensus       683 ~~~~G~~v~l~C~~~g~P-~p~i~W~k~g~~---l--------~~-----------~~~~~------~~~~~L~i~~v~~  733 (813)
                      .+.+|++|+|.|.+.+.. ...+.|||-...   .        ..           ..++.      .....|+|.+++.
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   81 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP   81 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence            367899999999987643 458999984321   0        00           11221      1123599999999


Q ss_pred             CCCEEEEEEEEc
Q psy14896        734 EDQGEYICRASN  745 (813)
Q Consensus       734 ~d~G~Y~C~a~N  745 (813)
                      +|+|.|.|...+
T Consensus        82 ~Dsg~YyCa~~~   93 (107)
T cd07700          82 EDSGTYFCMTVG   93 (107)
T ss_pred             HHCEEEEEeEcC
Confidence            999999999864

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>PHA03269 envelope glycoprotein C; Provisional

Probab=97.53  E-value=0.02  Score=58.69  Aligned_cols=165  Identities=18%  Similarity=0.196  Sum_probs=97.5

Q ss_pred             EEEcCCccccCCeeEEEEeecC-cee-eEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCc--ceEEEeec
Q psy14896        258 LIINDPRQVEDRGSYHCKASNK-FGS-IISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPG--VNYYWARD  333 (813)
Q Consensus       258 l~i~~~~~~~d~G~Y~C~a~n~-~g~-~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~--~~v~W~k~  333 (813)
                      |.|.+. +..++|.|+=++.+. .+. ..+..++|.+...|  .+...+.-+-+|++..-.|.+..-+|+  ..++|++|
T Consensus       291 L~I~sl-taATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~P--sVsV~p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~n  367 (566)
T PHA03269        291 LHILSL-DASTEGTYIWRVIHTANKNVINEHHITVMSYKRP--NITVIGDPVLLGNPYAAYCKVNKYYPPHSVIVKWTSN  367 (566)
T ss_pred             eEEeec-ccccCceEEEEEecCCCCceeeeeEEEEEEecCC--CccccCCccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence            677775 899999998776532 222 22455666665556  445555667789999999998777777  68899999


Q ss_pred             cccccccC-CccEEEccCccEEE-eeeee-cC-Cee-----eEEEEeeeccccCCC--CCceeeEEccCCcccccccCCC
Q psy14896        334 YFPNFVEE-DKRVFVSYDGALYF-SALEQ-ID-AGN-----YSCNVQSKVSDTGRN--GPFFPLKVFPHSNFQQLKFPNN  402 (813)
Q Consensus       334 ~~~~~~~~-~~~~~~~~~~~L~i-~~v~~-~D-~G~-----Y~C~a~n~~g~~~~~--s~~~~l~v~~~~~~~~~~~~~~  402 (813)
                      |.++.... ........+|.++. +-++. ++ ++.     .+|.+.-..+.....  +....-.|+.+|.+        
T Consensus       368 g~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY~~PtI--------  439 (566)
T PHA03269        368 FGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYPFPNV--------  439 (566)
T ss_pred             CcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCccccCCeE--------
Confidence            98864211 22233455664442 23323 22 344     599988654432222  22333344433321        


Q ss_pred             CCCCCCcCCCCCCcEEEEEEEeecCC--CeeeEeecCCcCC
Q psy14896        403 FPKTFPEAPKAGDKVRLECVAFGYPV--PSYNWTRRGSPLP  441 (813)
Q Consensus       403 ~~~~~~~~v~~g~~~~l~C~~~g~p~--p~i~W~~~~~~l~  441 (813)
                           +..+..|.-   .|.+.-.|.  ..+.|+-++.+..
T Consensus       440 -----Sm~FedG~A---VCtA~CVP~~~V~l~WlVgD~p~~  472 (566)
T PHA03269        440 -----SIEIIDGHI---VCLAKCVPRGVVHFNWWINDIPIE  472 (566)
T ss_pred             -----EEEEeCCEE---EEecccccCCCceEEEEecCCCCC
Confidence                 233444443   366665554  3789998887743

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.49  E-value=0.00029  Score=57.13  Aligned_cols=63  Identities=21%  Similarity=0.269  Sum_probs=42.8

Q ss_pred             CCceEEeCCCCCCCccEEEEccCCC----CCc---------cc--CCCeEEEe----eCccEEEEeecccCCeeEEEEEE
Q psy14896        584 WGKAMFCDPPTNYPGVNYYWARDYF----PNF---------VE--EDKRVFVS----YDGALYFSALEQIDAGNYSCNVQ  644 (813)
Q Consensus       584 ~~~~l~C~~~~~~p~~~v~W~k~~~----~~~---------~~--~~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~a~  644 (813)
                      ++++|.|..........|+|.|...    .+.         +.  -.+|+...    .+.+|+|.+++.+|+|.|+|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~   80 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV   80 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence            4688999985444567899998532    010         11  11344433    35679999999999999999997


Q ss_pred             ee
Q psy14896        645 SK  646 (813)
Q Consensus       645 n~  646 (813)
                      .-
T Consensus        81 t~   82 (96)
T cd05889          81 TY   82 (96)
T ss_pred             eC
Confidence            64

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.49  E-value=0.00039  Score=58.08  Aligned_cols=63  Identities=22%  Similarity=0.460  Sum_probs=44.0

Q ss_pred             CCCCCCeEEEEEEecCCCCCeEEEEeCC----ccc------CC------------Cceee----ecceEEEECCCCCCCC
Q psy14896        683 APKAGDKVRLECVAFGYPVPSYNWTRRG----SPL------PR------------NAYFE----NFNRILTIPNVKVEDQ  736 (813)
Q Consensus       683 ~~~~G~~v~l~C~~~g~P~p~i~W~k~g----~~l------~~------------~~~~~----~~~~~L~i~~v~~~d~  736 (813)
                      .+.+|++|+|+|.+...-...+.|||..    ..+      ..            ..++.    .....|+|.+++.+|+
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs   81 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE   81 (104)
T ss_pred             cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence            3678999999999875544579999843    211      00            01121    1234699999999999


Q ss_pred             EEEEEEEEc
Q psy14896        737 GEYICRASN  745 (813)
Q Consensus       737 G~Y~C~a~N  745 (813)
                      |.|.|.+.+
T Consensus        82 gtY~Ca~~~   90 (104)
T cd05720          82 GYYFCSVAS   90 (104)
T ss_pred             EEEEEEEcc
Confidence            999998864

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>PHA03273 envelope glycoprotein C; Provisional

Probab=97.48  E-value=0.0047  Score=63.00  Aligned_cols=195  Identities=17%  Similarity=0.216  Sum_probs=110.4

Q ss_pred             eEEEeCCCCCCCCceEEEEEEcCceeEE-eecEEEEEeecccccccCCCceeccCCCceEEeCCCCCCCc--cEEEEccC
Q psy14896        530 NLIINDPRQVEDRGSYHCKASNKFGSII-SESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPG--VNYYWARD  606 (813)
Q Consensus       530 ~l~i~~~~~~~d~G~Y~C~a~n~~g~~~-s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~v~W~k~  606 (813)
                      .|.|..+ ....+|.|+=...+..|... ...+.+....+|.+.+  .+.-+.+|++..-.|.+..-+|+  ..++|++|
T Consensus       199 ~LtI~sl-taaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv--~~~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~d  275 (486)
T PHA03273        199 PLTIKSV-DWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDL--SVHPSLKGENYRAVCVVASYFPHSSVKLRWYKN  275 (486)
T ss_pred             ceEEEec-chhhceEEEEEEecCCCceeeeeEEEEEEecCCcccc--cCCccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence            4899997 99999999877655444322 2234444456665444  45557889999999999666665  56999999


Q ss_pred             CCCCcccC--CCeEEEeeCcc------EEEEeecc-cCCeeEEEEEEeeecCcccc--CceeeEEEccCCCccccccCCC
Q psy14896        607 YFPNFVEE--DKRVFVSYDGA------LYFSALEQ-IDAGNYSCNVQSKVSDTGRN--GPFFPLKVFPHSNFQQLKFPNN  675 (813)
Q Consensus       607 ~~~~~~~~--~~~~~~~~~~~------L~i~~~~~-~d~G~Y~C~a~n~~g~~~~~--~~~~~l~v~~~p~~~~~~~p~~  675 (813)
                      |.++....  ........+|-      |++..... +..=+.+|.+.=-.+....+  .....-.|..+|.+.       
T Consensus       276 g~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy~~P~Is-------  348 (486)
T PHA03273        276 AKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVFVAPTVS-------  348 (486)
T ss_pred             CeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeeccccccCccccCCeEE-------
Confidence            98755211  12233333443      33332211 22347899986433332221  122334455555332       


Q ss_pred             CCCCCCcCCCCCCeEEEEEEecCCCC--CeEEEEeCCcccC--CCce-e----eecceEEEECC---CCCCCCE--EEEE
Q psy14896        676 FPKTFPEAPKAGDKVRLECVAFGYPV--PSYNWTRRGSPLP--RNAY-F----ENFNRILTIPN---VKVEDQG--EYIC  741 (813)
Q Consensus       676 ~~~~~~~~~~~G~~v~l~C~~~g~P~--p~i~W~k~g~~l~--~~~~-~----~~~~~~L~i~~---v~~~d~G--~Y~C  741 (813)
                            +....|+   -.|.+.-.|.  ..+.|+-++ .++  .... .    ...-+...|.+   +..+| |  +|+|
T Consensus       349 ------~~F~~G~---AVCtA~CVP~egV~l~W~v~D-~~p~a~~~~~~tG~C~~~PglvNlrS~~pls~~d-gp~eYTC  417 (486)
T PHA03273        349 ------VTVEDGD---AVCTAKCVPSTGVFVSWSVND-HLPGVPSQDMTTGVCSSHPGLVNMQSRRPLSEEN-GEREYSC  417 (486)
T ss_pred             ------EEEeCCE---EEEecccccCCCeeEEEEccC-CCCCCcccccccccCCCCCCceeeeccccccccC-CceeEEE
Confidence                  2233333   3577777776  689998766 321  1111 1    11123455655   44444 6  9999


Q ss_pred             EEEc
Q psy14896        742 RASN  745 (813)
Q Consensus       742 ~a~N  745 (813)
                      ++.-
T Consensus       418 rl~G  421 (486)
T PHA03273        418 IIEG  421 (486)
T ss_pred             EEee
Confidence            9963

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=97.46  E-value=0.00092  Score=57.36  Aligned_cols=78  Identities=23%  Similarity=0.388  Sum_probs=48.3

Q ss_pred             CCCceeecCCCccccccEEEEeeeccC-CCCeEEEeecc--cccccccc--cccccCCCccEEee------CCeEEEcCC
Q psy14896        195 QPTDVVFDLSKRSILNDITLSCYAGGY-PNPSYEWFKED--YVQDRLVA--NLIDPLSDKRFTLS------GGNLIINDP  263 (813)
Q Consensus       195 ~p~~~~v~~g~~~~g~~v~l~C~~~g~-P~p~v~W~k~g--~~l~~~~~--~~~~~~~~~~~~~~------~~~l~i~~~  263 (813)
                      .|..+.+.+|     ++|+|+|..... ....+.|||..  ..+.-...  .........|+.+.      +-+|.|.+.
T Consensus         5 ~~~~v~~~~G-----~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~   79 (116)
T cd07706           5 AQPDVSVQVG-----EEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISAL   79 (116)
T ss_pred             eCCceEEcCC-----CCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCC
Confidence            3556666666     779999998653 45689999953  22111000  00111223555543      124777775


Q ss_pred             ccccCCeeEEEEeec
Q psy14896        264 RQVEDRGSYHCKASN  278 (813)
Q Consensus       264 ~~~~d~G~Y~C~a~n  278 (813)
                       +.+|+|.|.|.+..
T Consensus        80 -~~~Dsg~Y~C~~~~   93 (116)
T cd07706          80 -QLEDSAKYFCALST   93 (116)
T ss_pred             -CHHHCEEEEEEEEC
Confidence             89999999999985

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=97.46  E-value=0.00098  Score=51.66  Aligned_cols=58  Identities=17%  Similarity=0.258  Sum_probs=40.8

Q ss_pred             cccEEEEeeecc--CCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecC
Q psy14896        209 LNDITLSCYAGG--YPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNK  279 (813)
Q Consensus       209 g~~v~l~C~~~g--~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~  279 (813)
                      |++++|+|+...  .|.+.|+|+-.+....            ........+|.+.+. ...|+|.++|.++-.
T Consensus        14 G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~------------~~~~~~~ktL~~~qv-~~qdSG~WtC~V~~~   73 (88)
T cd07694          14 GTNLTLTLHGSSNSLPAFKVEWRGPGNKSK------------QILNQDKKTLNLVQL-GPNDSGTWDCIVSVN   73 (88)
T ss_pred             CCcEEEEEecCCCCCCCccEEEeCCCCccc------------eeccCCccEEEecee-CcccCCEEEEEEEEC
Confidence            488999999954  4555999998875321            001123456777775 899999999999743

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>PHA03270 envelope glycoprotein C; Provisional

Probab=97.43  E-value=0.01  Score=59.98  Aligned_cols=197  Identities=17%  Similarity=0.221  Sum_probs=112.8

Q ss_pred             CCeEEEeCCCCCCCCceEEEEEEcCcee-EEeecEEEEEeecccccccCCCceeccCCCceEEeCCCCCCCc--cEEEEc
Q psy14896        528 GGNLIINDPRQVEDRGSYHCKASNKFGS-IISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPG--VNYYWA  604 (813)
Q Consensus       528 ~~~l~i~~~~~~~d~G~Y~C~a~n~~g~-~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~v~W~  604 (813)
                      ...|.|..+ +...+|.|+=...+..+. ...+.+.+....+|.+.+  .+.-+.+|++..-+|.+..-+|+  ..++||
T Consensus       181 ~~~L~I~sl-t~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv--~~~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf  257 (466)
T PHA03270        181 TQRLVIQEL-TLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSI--RPHAVLEGEPFGATCVAANYYPGDRAAFRWF  257 (466)
T ss_pred             cceEEEEEc-ccccceEEEEEEecCCCceeeeeEEEEEEecCCcccc--cCCccccCCCceEEEEeeeecCCCceEEEEE
Confidence            347999997 899999999887665443 223345555566666544  44557789999999999666665  569999


Q ss_pred             cCCCCCcccC--CCeEEEeeCccEEEEeecccCCe------eEEEEEEeeecCccc--cCceeeEEEccCCCccccccCC
Q psy14896        605 RDYFPNFVEE--DKRVFVSYDGALYFSALEQIDAG------NYSCNVQSKVSDTGR--NGPFFPLKVFPHSNFQQLKFPN  674 (813)
Q Consensus       605 k~~~~~~~~~--~~~~~~~~~~~L~i~~~~~~d~G------~Y~C~a~n~~g~~~~--~~~~~~l~v~~~p~~~~~~~p~  674 (813)
                      +||.++....  +.......+|-..+.-++..+.+      +.+|.+.=-.+....  ......-.|..+|.+.      
T Consensus       258 ~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY~~P~Is------  331 (466)
T PHA03270        258 EGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVLPRPTIE------  331 (466)
T ss_pred             eCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeecccccCccccCCeEE------
Confidence            9998753222  22333344553344444444433      789998643332211  1222333444444332      


Q ss_pred             CCCCCCCcCCCCCCeEEEEEEecCCCC-CeEEEEeCCcccCCCce-ee-----ecceEEEEC---CCCCCCCEEEEEEEE
Q psy14896        675 NFPKTFPEAPKAGDKVRLECVAFGYPV-PSYNWTRRGSPLPRNAY-FE-----NFNRILTIP---NVKVEDQGEYICRAS  744 (813)
Q Consensus       675 ~~~~~~~~~~~~G~~v~l~C~~~g~P~-p~i~W~k~g~~l~~~~~-~~-----~~~~~L~i~---~v~~~d~G~Y~C~a~  744 (813)
                             +.+..|.   -.|.+.-.|. ..+.|+-++......+. +.     ...+...|.   .++.+ ..+|+|.+.
T Consensus       332 -------v~F~dG~---AVCtA~CVPegV~l~W~V~D~~~pa~~~~v~~G~C~~~PGlvNlrS~~plSd~-~~eYTCrl~  400 (466)
T PHA03270        332 -------MEFGGDE---AVCTAACVPEGVTLAWLLGADPAPAEKAAVAGGPCPGRPGLARVRSALPLSRE-HSEYTCRLV  400 (466)
T ss_pred             -------EEEeCCE---EEEeccccCCCCEEEEEecCCCCCCccceeecccCCCCCCceeeecccccccC-CceEEEEEe
Confidence                   2233343   3466665553 48999987766543321 11     011223332   23333 369999985

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.43  E-value=0.00038  Score=50.67  Aligned_cols=59  Identities=22%  Similarity=0.469  Sum_probs=43.6

Q ss_pred             CCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896        687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ  759 (813)
Q Consensus       687 G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  759 (813)
                      .+.|.|+|.+.    -.|+|+| |..+....     +.+|.+.....+-.|.|.|.++|    .+....|.|.
T Consensus         6 ~~~V~L~C~~~----tsi~W~k-G~~~~~~~-----~~tlnLGs~~~DPRG~Y~C~~s~----~~~~~~LQVy   64 (69)
T cd07691           6 EGKVFLKCNGA----TNITWKK-GKEILEVS-----NTLLDLGSRINDPRGTYSCKESE----PNKEKTLQVY   64 (69)
T ss_pred             CceEEEEecCC----CcEEEec-Cccccccc-----ccEEeccCcccCCCcceEecCcc----CCCcEEEEEE
Confidence            46899999762    4699999 66654332     56899999999999999999987    2344445443

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd00096 Ig Immunoglobulin domain

Probab=97.37  E-value=0.00044  Score=52.95  Aligned_cols=66  Identities=32%  Similarity=0.545  Sum_probs=43.0

Q ss_pred             EEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCc
Q psy14896        212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKF  280 (813)
Q Consensus       212 v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~  280 (813)
                      +.|.|.+.+.|.+.+.|++++.........  ..............|.|.+. +.+|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~-~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLT--RVRSSRGTSSGSSTLTISNV-TLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccE--EeccccCcceeEEEEEECcc-CcccCcEEEEEEecCc
Confidence            469999988788899999998654221100  00011111222445777765 7899999999998765

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.34  E-value=0.0014  Score=53.16  Aligned_cols=71  Identities=15%  Similarity=0.177  Sum_probs=45.4

Q ss_pred             CCeEEEEEEec-CCCCCeEEEEeCCcccCCCcee------eecceEEEECCCCCCCCEEEEEEEEcCCCc--eEEEEEEE
Q psy14896        687 GDKVRLECVAF-GYPVPSYNWTRRGSPLPRNAYF------ENFNRILTIPNVKVEDQGEYICRASNDRSA--LESSVTIS  757 (813)
Q Consensus       687 G~~v~l~C~~~-g~P~p~i~W~k~g~~l~~~~~~------~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~--~~~~~~l~  757 (813)
                      .....+.|.+. |.|.+.|+|+++..........      ..-.+.|.+.....+|.-.|+|+|.|..-.  ...++.|.
T Consensus        15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~~~~L~   94 (95)
T cd05719          15 EPVTVATCVSANGKPPATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQRFSVTLN   94 (95)
T ss_pred             CccEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEEee
Confidence            44678999995 8999999999972111111111      111346777666666667999999998643  34445544

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>PHA03270 envelope glycoprotein C; Provisional

Probab=97.34  E-value=0.02  Score=57.97  Aligned_cols=168  Identities=18%  Similarity=0.221  Sum_probs=102.4

Q ss_pred             CeEEEcCCccccCCeeEEEEeecCceee-EeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCc--ceEEEee
Q psy14896        256 GNLIINDPRQVEDRGSYHCKASNKFGSI-ISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPG--VNYYWAR  332 (813)
Q Consensus       256 ~~l~i~~~~~~~d~G~Y~C~a~n~~g~~-~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~--~~v~W~k  332 (813)
                      ..|.|... +...+|.|+=..-+..+.. .++.++|.....|.+  ...+..+-+|++..-.|.+..-+|+  ..++|++
T Consensus       182 ~~L~I~sl-t~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psv--sv~~~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~  258 (466)
T PHA03270        182 QRLVIQEL-TLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSL--SIRPHAVLEGEPFGATCVAANYYPGDRAAFRWFE  258 (466)
T ss_pred             ceEEEEEc-ccccceEEEEEEecCCCceeeeeEEEEEEecCCcc--cccCCccccCCCceEEEEeeeecCCCceEEEEEe
Confidence            35777775 8999999999977655533 244566555555554  4445566789999999998777777  6899999


Q ss_pred             ccccccccC--CccEEEccCccEEEeeeeecCCe------eeEEEEeeeccccC--CCCCceeeEEccCCcccccccCCC
Q psy14896        333 DYFPNFVEE--DKRVFVSYDGALYFSALEQIDAG------NYSCNVQSKVSDTG--RNGPFFPLKVFPHSNFQQLKFPNN  402 (813)
Q Consensus       333 ~~~~~~~~~--~~~~~~~~~~~L~i~~v~~~D~G------~Y~C~a~n~~g~~~--~~s~~~~l~v~~~~~~~~~~~~~~  402 (813)
                      ||.++....  +.......+|--.++-++.++.+      ..+|.+.-......  +.+....-.|+.+|.+        
T Consensus       259 ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY~~P~I--------  330 (466)
T PHA03270        259 GGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVLPRPTI--------  330 (466)
T ss_pred             CCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeecccccCccccCCeE--------
Confidence            999853222  23333444553455555655543      78999876544321  1222333334433321        


Q ss_pred             CCCCCCcCCCCCCcEEEEEEEeecCC-CeeeEeecCCcCCC
Q psy14896        403 FPKTFPEAPKAGDKVRLECVAFGYPV-PSYNWTRRGSPLPR  442 (813)
Q Consensus       403 ~~~~~~~~v~~g~~~~l~C~~~g~p~-p~i~W~~~~~~l~~  442 (813)
                           ...+..|.-+   |.+.-.|. ..+.|.-++.+.+.
T Consensus       331 -----sv~F~dG~AV---CtA~CVPegV~l~W~V~D~~~pa  363 (466)
T PHA03270        331 -----EMEFGGDEAV---CTAACVPEGVTLAWLLGADPAPA  363 (466)
T ss_pred             -----EEEEeCCEEE---EeccccCCCCEEEEEecCCCCCC
Confidence                 2234444433   55554443 38999988877654

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=97.34  E-value=0.0011  Score=55.69  Aligned_cols=71  Identities=27%  Similarity=0.474  Sum_probs=41.5

Q ss_pred             cccccEEEEeeeccC-CCCeEEEeecccc-----ccccc-----c-cccc-cCCCccEEe--e-CC---eEEEcCCcccc
Q psy14896        207 SILNDITLSCYAGGY-PNPSYEWFKEDYV-----QDRLV-----A-NLID-PLSDKRFTL--S-GG---NLIINDPRQVE  267 (813)
Q Consensus       207 ~~g~~v~l~C~~~g~-P~p~v~W~k~g~~-----l~~~~-----~-~~~~-~~~~~~~~~--~-~~---~l~i~~~~~~~  267 (813)
                      ++|++|+|.|.+.+. ....+.|||....     +.-..     . .... .....++..  . ++   +|.|.+. +.+
T Consensus         4 ~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~-~~~   82 (107)
T cd07700           4 QTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRV-KPE   82 (107)
T ss_pred             cCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCC-CHH
Confidence            346889999998653 3458999997532     10000     0 0000 001234432  1 12   4777775 999


Q ss_pred             CCeeEEEEeec
Q psy14896        268 DRGSYHCKASN  278 (813)
Q Consensus       268 d~G~Y~C~a~n  278 (813)
                      |+|.|.|...+
T Consensus        83 Dsg~YyCa~~~   93 (107)
T cd07700          83 DSGTYFCMTVG   93 (107)
T ss_pred             HCEEEEEeEcC
Confidence            99999999864

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=97.31  E-value=0.00055  Score=56.70  Aligned_cols=68  Identities=22%  Similarity=0.317  Sum_probs=47.5

Q ss_pred             eeecCCCeEEEecCCCCCCcceEEEeecccc---cc--------ccCCccEEEccC-----ccEEEeeeeecCCeeeEEE
Q psy14896        306 IGNQNWGKAMFCDPPTNYPGVNYYWARDYFP---NF--------VEEDKRVFVSYD-----GALYFSALEQIDAGNYSCN  369 (813)
Q Consensus       306 ~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~---~~--------~~~~~~~~~~~~-----~~L~i~~v~~~D~G~Y~C~  369 (813)
                      .+.+|+.++|.|......+...+.|+|....   ..        .....|+.+..+     .+|.|.+++.+|+|.|.|.
T Consensus         3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   82 (98)
T cd05716           3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCG   82 (98)
T ss_pred             EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence            5678999999998654456678999976421   11        112344444321     2699999999999999999


Q ss_pred             Eeee
Q psy14896        370 VQSK  373 (813)
Q Consensus       370 a~n~  373 (813)
                      +...
T Consensus        83 ~~~~   86 (98)
T cd05716          83 VGDD   86 (98)
T ss_pred             cccC
Confidence            8754

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.30  E-value=0.00044  Score=57.09  Aligned_cols=69  Identities=19%  Similarity=0.393  Sum_probs=40.2

Q ss_pred             ccEEEEeeecc-CC-CCeEEEeecccccccccc-cccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCc
Q psy14896        210 NDITLSCYAGG-YP-NPSYEWFKEDYVQDRLVA-NLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKF  280 (813)
Q Consensus       210 ~~v~l~C~~~g-~P-~p~v~W~k~g~~l~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~  280 (813)
                      +.++|.|.|.| +| ...|+|+|||+++..... .......+..|+. ...|.+... .-++...|+|++.+..
T Consensus        18 ~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~-~s~L~v~~~-~w~~~~~~sC~V~H~~   89 (100)
T cd07699          18 GKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSL-SSYLTLTKS-DWNKHKVYTCEVTHEG   89 (100)
T ss_pred             CCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEE-EEEEEEcHH-HhCCCCeEEEEEEecC
Confidence            55999999987 56 569999999998743211 0111111222222 112333321 2345678999998754

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.29  E-value=0.0006  Score=55.61  Aligned_cols=65  Identities=22%  Similarity=0.322  Sum_probs=42.6

Q ss_pred             CCCceEEeCCCCCCCc-cEEEEccCCCCC-cccCCCeEEEeeCccEE---EEeecccCCeeEEEEEEeee
Q psy14896        583 NWGKAMFCDPPTNYPG-VNYYWARDYFPN-FVEEDKRVFVSYDGALY---FSALEQIDAGNYSCNVQSKV  647 (813)
Q Consensus       583 g~~~~l~C~~~~~~p~-~~v~W~k~~~~~-~~~~~~~~~~~~~~~L~---i~~~~~~d~G~Y~C~a~n~~  647 (813)
                      ++.++|.|.+..-+|. ..++|+|+|... ............+|++.   ...+...+.+.|+|.+.+..
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~   83 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG   83 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence            6779999999444565 489999998521 11111233344556533   33455678999999998875

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>PHA03271 envelope glycoprotein C; Provisional

Probab=97.29  E-value=0.0093  Score=59.70  Aligned_cols=197  Identities=18%  Similarity=0.211  Sum_probs=106.3

Q ss_pred             eEEEeCCCCCCCCceEEEEEEcCceeEEe-ecEEEEEeecc-cccccCCCceeccCCCceEEeCCCCCCCc--cEEEEcc
Q psy14896        530 NLIINDPRQVEDRGSYHCKASNKFGSIIS-ESVQLAFGFIG-EFNLKRAPEIGNQNWGKAMFCDPPTNYPG--VNYYWAR  605 (813)
Q Consensus       530 ~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s-~~~~l~v~~~p-~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~v~W~k  605 (813)
                      .|.|.++ ...++|.|+....+....... +.+.+.+.+.| .+.+.  +.-+..|++..-+|.+..-+|+  ..++|++
T Consensus       208 ~v~I~sv-D~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~--a~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~  284 (490)
T PHA03271        208 GVEIRNV-DYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVL--APPVLSGENYKASCIVRHFYPPGSVYVSWRQ  284 (490)
T ss_pred             eEEEEEe-ecccceEEEEEecCCCCCccccceEEEEEEecCCCcccc--CCccccCCCceEEEEeeeecCCCceEEEEEe
Confidence            6889997 899999887766654443322 23444444443 34443  4456789999999999666665  5699999


Q ss_pred             CCCCCcccCCCeEEE----eeCcc-----EEEEeecccCCeeEEEEEEeeecCc-cccCceeeEEEccCCCccccccCCC
Q psy14896        606 DYFPNFVEEDKRVFV----SYDGA-----LYFSALEQIDAGNYSCNVQSKVSDT-GRNGPFFPLKVFPHSNFQQLKFPNN  675 (813)
Q Consensus       606 ~~~~~~~~~~~~~~~----~~~~~-----L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~~~~l~v~~~p~~~~~~~p~~  675 (813)
                      ||.+...........    ..++.     |.+.+...+..=+.+|.+.=-.+.. .+......-.|..+|.+.       
T Consensus       285 nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~rnAaatP~VY~~P~IS-------  357 (490)
T PHA03271        285 NGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTTNATAIPTVYHHPRIS-------  357 (490)
T ss_pred             CCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeeeecccCCccccCCeEE-------
Confidence            998754333222221    11221     2332222222338999986433321 111222333344444332       


Q ss_pred             CCCCCCcCCCCCCeEEEEEEecCCCC-CeEEEEeCCcccCCCce---ee----ecceEEEECC-CCCCCC---EEEEEEE
Q psy14896        676 FPKTFPEAPKAGDKVRLECVAFGYPV-PSYNWTRRGSPLPRNAY---FE----NFNRILTIPN-VKVEDQ---GEYICRA  743 (813)
Q Consensus       676 ~~~~~~~~~~~G~~v~l~C~~~g~P~-p~i~W~k~g~~l~~~~~---~~----~~~~~L~i~~-v~~~d~---G~Y~C~a  743 (813)
                            +....|+.   .|.+.-.|. ..+.|+-++.++.....   ..    ...+...|.+ ...+|.   -+|+|++
T Consensus       358 ------v~FedG~A---VCtA~CVP~gV~lrWlVgD~p~pn~t~d~~itGvC~erPGlVNLrS~lPlSd~dgpveYTCrL  428 (490)
T PHA03271        358 ------LAFKDGYA---ICTIECVPSGITVRWLVHDEPQPNTTYDTVVTGLCRTIDRHRNLISRIPVQDNWQKTKYTCRL  428 (490)
T ss_pred             ------EEEeCCEE---EEeccccCCCcEEEEEecCCCCCCcccccccccccCCCCCceeeeccCCchhcCCceeEEEEE
Confidence                  23334443   366655553 48999987766433211   11    1123445544 333433   4999998


Q ss_pred             Ec
Q psy14896        744 SN  745 (813)
Q Consensus       744 ~N  745 (813)
                      .-
T Consensus       429 ~G  430 (490)
T PHA03271        429 IG  430 (490)
T ss_pred             ee
Confidence            63

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.26  E-value=0.0011  Score=53.93  Aligned_cols=62  Identities=11%  Similarity=0.194  Sum_probs=42.4

Q ss_pred             CceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCcc------EEEEeecccCCeeEEEEEEeeecC
Q psy14896        585 GKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA------LYFSALEQIDAGNYSCNVQSKVSD  649 (813)
Q Consensus       585 ~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~------L~i~~~~~~d~G~Y~C~a~n~~g~  649 (813)
                      ...+.|.+..|+|.+.|+|+++...   ..........+|+      |.+.....+|.-.|+|+|.|..-.
T Consensus        17 ~~va~C~s~~gkP~a~ItW~~~~~~---~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~   84 (95)
T cd05719          17 VTVATCVSANGKPPATISWETTLGG---EAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQ   84 (95)
T ss_pred             cEEEEEECCCCcCCCEEEEEeCCCC---cceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence            4579999989999999999997211   1112222334443      566656667778999999998743

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.23  E-value=0.0021  Score=52.08  Aligned_cols=67  Identities=12%  Similarity=0.127  Sum_probs=38.3

Q ss_pred             ccEEEEeeec-cCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCce
Q psy14896        210 NDITLSCYAG-GYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFG  281 (813)
Q Consensus       210 ~~v~l~C~~~-g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g  281 (813)
                      ..+.++|.+. |+|.+.|+|+++......   .......+..++. ...|.+... ..+|...|+|+|.|..-
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~---~~~~~~~~gt~tv-~S~l~~~P~-~~d~Gk~ltC~v~h~al   83 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWSSTLGGNAN---TTSKENGDGTVTV-TSEYSLVPT-PEANGKEVTCKVEHETL   83 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEEcCCCCCee---EEEEeCCCCCEEE-EEEEEEecC-HHHCCCEEEEEEeCccc
Confidence            4589999885 899999999998321110   0111111222221 123444332 45566689999998653

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.23  E-value=0.001  Score=55.54  Aligned_cols=71  Identities=25%  Similarity=0.342  Sum_probs=43.0

Q ss_pred             cccccEEEEeeeccCCCCeEEEeecccc----ccccccc----cc----ccCCCccEEee----CCeEEEcCCccccCCe
Q psy14896        207 SILNDITLSCYAGGYPNPSYEWFKEDYV----QDRLVAN----LI----DPLSDKRFTLS----GGNLIINDPRQVEDRG  270 (813)
Q Consensus       207 ~~g~~v~l~C~~~g~P~p~v~W~k~g~~----l~~~~~~----~~----~~~~~~~~~~~----~~~l~i~~~~~~~d~G  270 (813)
                      ++|++|+|+|.+...-...+.|||....    +.-....    ..    ......++...    ..+|.|.+. +.+|+|
T Consensus         4 ~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~-~~sDsg   82 (104)
T cd05720           4 ELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNF-QKENEG   82 (104)
T ss_pred             cCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCC-CHHHCE
Confidence            4568899999986544567999997632    1100000    00    00112344432    224778775 899999


Q ss_pred             eEEEEeec
Q psy14896        271 SYHCKASN  278 (813)
Q Consensus       271 ~Y~C~a~n  278 (813)
                      .|.|.+.+
T Consensus        83 tY~Ca~~~   90 (104)
T cd05720          83 YYFCSVAS   90 (104)
T ss_pred             EEEEEEcc
Confidence            99998764

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.22  E-value=0.0014  Score=53.09  Aligned_cols=63  Identities=13%  Similarity=0.201  Sum_probs=41.7

Q ss_pred             CeEEEEEEec-CCCCCeEEEEeCCcccCCCceee------ecceEEEECCCCCCCCEEEEEEEEcCCCce
Q psy14896        688 DKVRLECVAF-GYPVPSYNWTRRGSPLPRNAYFE------NFNRILTIPNVKVEDQGEYICRASNDRSAL  750 (813)
Q Consensus       688 ~~v~l~C~~~-g~P~p~i~W~k~g~~l~~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~  750 (813)
                      ..+.+.|.+. |.|.+.|+|+++...........      .-.+.|.+..-..+|.-.|+|+|.|..-..
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~   85 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQE   85 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCC
Confidence            4678999887 89999999999832221111111      113467776666667779999999986433

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.22  E-value=0.0011  Score=54.09  Aligned_cols=58  Identities=28%  Similarity=0.543  Sum_probs=39.1

Q ss_pred             CCeEEEEEEecCC-CCC-eEEEEeCCcccCCCc----eeeec------ceEEEECCCCCCCCEEEEEEEEcCC
Q psy14896        687 GDKVRLECVAFGY-PVP-SYNWTRRGSPLPRNA----YFENF------NRILTIPNVKVEDQGEYICRASNDR  747 (813)
Q Consensus       687 G~~v~l~C~~~g~-P~p-~i~W~k~g~~l~~~~----~~~~~------~~~L~i~~v~~~d~G~Y~C~a~N~~  747 (813)
                      |+.++|.|.+.|+ |++ .++|+|+|+.+..+.    .....      .+.|.|..   .|.+.|+|++.+..
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~---~~~~~ytC~V~H~~   83 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPP---EDKARYSCRVEHSG   83 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECC---CCCCEEEEEEEeCC
Confidence            7889999999996 543 899999996433221    11111      22455543   47899999998864

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.20  E-value=0.00066  Score=56.94  Aligned_cols=68  Identities=16%  Similarity=0.223  Sum_probs=43.8

Q ss_pred             eeccCCCceEEeCCCCCCCc-cEEEEccCCCCCcccCCCeEEEeeCc-c------EEEEeecccCCe-eEEEEEEeeec
Q psy14896        579 IGNQNWGKAMFCDPPTNYPG-VNYYWARDYFPNFVEEDKRVFVSYDG-A------LYFSALEQIDAG-NYSCNVQSKVS  648 (813)
Q Consensus       579 ~~~~g~~~~l~C~~~~~~p~-~~v~W~k~~~~~~~~~~~~~~~~~~~-~------L~i~~~~~~d~G-~Y~C~a~n~~g  648 (813)
                      ....|+.++|.|.+...+|. ..|+|+|||.++.. .........++ +      |.+. +...|.| .|+|.+.+...
T Consensus        17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~-~~~~~~p~~d~~ty~~~S~L~~~-~~~~d~~~~ytC~V~H~~l   93 (111)
T cd05772          17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSA-EQPNITPEGDSVSYNVTSTVQVK-LTEDDVHSQVTCEVQHRTL   93 (111)
T ss_pred             ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcc-cccceeeCCCCCcEEEEEEEEEE-CccccccCceEEEEEeCCC
Confidence            34567789999999777885 79999999987432 11222223343 4      3333 3344545 49999999753

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>PHA02672 ORF110 EEV glycoprotein; Provisional

Probab=97.20  E-value=0.00031  Score=58.58  Aligned_cols=81  Identities=20%  Similarity=0.302  Sum_probs=60.8

Q ss_pred             CCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEc
Q psy14896         27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNE  106 (813)
Q Consensus        27 ~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~  106 (813)
                      .-|..||.+|++.||.-..- ..+-..|...|+++.|+|--|-+..-+.-++.+.    ....+|.+-++.- ...|.=.
T Consensus        48 ~AC~~GWvp~dd~CyLnT~~-q~s~~~A~~iC~~~~a~lP~~pn~~hLKgVm~lt----~~r~FW~thh~~y-~~vy~~~  121 (166)
T PHA02672         48 EACENGWVPIKDLCVLNTHV-ITNVTLAHDICASMDGDPPATPNTMLLKGIMFLT----GERSFWMTHHDAY-TSVYEPK  121 (166)
T ss_pred             hhhhcCCeeccCEEEEecce-eecccHHHHHHHhccCCCCCCCCHhHhhheeeEe----cccEEEEEccccc-eeeeecC
Confidence            44999999999999987777 4899999999999999999988855444343432    4457888877653 3456666


Q ss_pred             CCCCCCc
Q psy14896        107 DGTNLNE  113 (813)
Q Consensus       107 dgs~~~~  113 (813)
                      +|+.+.+
T Consensus       122 ~~~~~~~  128 (166)
T PHA02672        122 RGSYLPS  128 (166)
T ss_pred             CCCcccc
Confidence            7776653

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.20  E-value=0.0012  Score=53.88  Aligned_cols=66  Identities=14%  Similarity=0.273  Sum_probs=42.1

Q ss_pred             cCCCCCCeEEEEEEecCC--CC-CeEEEEeCCcccCCC---ceeee------cceEEEECCCCCCCCEEEEEEEEcCC
Q psy14896        682 EAPKAGDKVRLECVAFGY--PV-PSYNWTRRGSPLPRN---AYFEN------FNRILTIPNVKVEDQGEYICRASNDR  747 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~--P~-p~i~W~k~g~~l~~~---~~~~~------~~~~L~i~~v~~~d~G~Y~C~a~N~~  747 (813)
                      ..+..|+.++|.|.+.|+  |+ ..|+|+|||+.....   .....      -.+.|.+..-...+.-.|+|.+....
T Consensus         9 ~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~   86 (96)
T cd07696           9 KQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPD   86 (96)
T ss_pred             HHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCC
Confidence            345678999999999998  54 379999997432111   00111      12346665544444558999998763

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA03271 envelope glycoprotein C; Provisional

Probab=97.19  E-value=0.037  Score=55.66  Aligned_cols=161  Identities=11%  Similarity=0.224  Sum_probs=94.3

Q ss_pred             cEEEEeecccCCeeEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCC--
Q psy14896        625 ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVP--  702 (813)
Q Consensus       625 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p--  702 (813)
                      .|.|.++...|+|.|+....+.... ......+.+.+.+.|....+..         ..+..|+...=.|.+..+=+|  
T Consensus       208 ~v~I~svD~~t~Gy~~v~~~d~~N~-~i~e~~~~~~v~~RPPsVsV~a---------~PVL~Ge~YkAtC~vAnYYPP~S  277 (490)
T PHA03271        208 GVEIRNVDYADNGYIQVIMRDPFNR-PLLDKHIYIRVCQRPASVDVLA---------PPVLSGENYKASCIVRHFYPPGS  277 (490)
T ss_pred             eEEEEEeecccceEEEEEecCCCCC-ccccceEEEEEEecCCCccccC---------CccccCCCceEEEEeeeecCCCc
Confidence            4899999999999886665543332 2334456666666654333322         346789999999999854333  


Q ss_pred             -eEEEEeCCcccCCCceee------------ecceEEEECCCCCCCCEEEEEEEEcCCCceE----EEEEEEEEcCCccc
Q psy14896        703 -SYNWTRRGSPLPRNAYFE------------NFNRILTIPNVKVEDQGEYICRASNDRSALE----SSVTISIQAEPNFT  765 (813)
Q Consensus       703 -~i~W~k~g~~l~~~~~~~------------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~----~~~~l~V~~~P~~~  765 (813)
                       .++|++||.++......+            ...++|++.+...+..=..+|.+.=.-+...    +++.-.|..+|.+.
T Consensus       278 vrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~rnAaatP~VY~~P~IS  357 (490)
T PHA03271        278 VYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTTNATAIPTVYHHPRIS  357 (490)
T ss_pred             eEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeeeecccCCccccCCeEE
Confidence             799999998875432111            1123455544433333489999973323222    22233344445443


Q ss_pred             ccCCceeecCCCeEEEEEEEcccC-CceEEEEECCEecc
Q psy14896        766 IPLTDKHMDNQADLTWTCEAFGVP-DVTYSWFRNGELGH  803 (813)
Q Consensus       766 ~~~~~~~~~~g~~~~l~C~~~g~p-~~~v~W~k~g~~l~  803 (813)
                           +.+..|..   .|.+.-.| ...+.|+-++.++.
T Consensus       358 -----v~FedG~A---VCtA~CVP~gV~lrWlVgD~p~p  388 (490)
T PHA03271        358 -----LAFKDGYA---ICTIECVPSGITVRWLVHDEPQP  388 (490)
T ss_pred             -----EEEeCCEE---EEeccccCCCcEEEEEecCCCCC
Confidence                 33444543   25544333 56899998776653

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.17  E-value=0.0012  Score=53.47  Aligned_cols=64  Identities=19%  Similarity=0.381  Sum_probs=43.8

Q ss_pred             CCCeEEEEEEecCC-CC-CeEEEEeCCcccCCCcee-----e-----ecceEEEECCCCCCCCEEEEEEEEcCCCc
Q psy14896        686 AGDKVRLECVAFGY-PV-PSYNWTRRGSPLPRNAYF-----E-----NFNRILTIPNVKVEDQGEYICRASNDRSA  749 (813)
Q Consensus       686 ~G~~v~l~C~~~g~-P~-p~i~W~k~g~~l~~~~~~-----~-----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~  749 (813)
                      .++.++|.|.|.|+ |. ..|+|+|||..+..+...     .     ...+.|.|..-...+...|+|++.+....
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~   88 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT   88 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence            45679999999984 54 489999999987433211     1     11345777655556778999999886443

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>PHA03273 envelope glycoprotein C; Provisional

Probab=97.15  E-value=0.024  Score=58.05  Aligned_cols=161  Identities=17%  Similarity=0.175  Sum_probs=93.8

Q ss_pred             EEEcCCccccCCeeEEEEeecCceeeE-eeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCc--ceEEEeecc
Q psy14896        258 LIINDPRQVEDRGSYHCKASNKFGSII-SESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPG--VNYYWARDY  334 (813)
Q Consensus       258 l~i~~~~~~~d~G~Y~C~a~n~~g~~~-s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~--~~v~W~k~~  334 (813)
                      |.|... +..++|.|+=+..+..|... +..++|....+|.  +...+..+-+|++..-.|.+..-+|+  ..++|++||
T Consensus       200 LtI~sl-taaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Ps--vsv~~~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg  276 (486)
T PHA03273        200 LTIKSV-DWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPL--VDLSVHPSLKGENYRAVCVVASYFPHSSVKLRWYKNA  276 (486)
T ss_pred             eEEEec-chhhceEEEEEEecCCCceeeeeEEEEEEecCCc--ccccCCccccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence            777775 89999999977666555431 2334444344454  44555667789999999998777777  689999999


Q ss_pred             ccccccC--CccEEEccCccE-EEeeeeecCC------eeeEEEEeeeccccCCC--CCceeeEEccCCcccccccCCCC
Q psy14896        335 FPNFVEE--DKRVFVSYDGAL-YFSALEQIDA------GNYSCNVQSKVSDTGRN--GPFFPLKVFPHSNFQQLKFPNNF  403 (813)
Q Consensus       335 ~~~~~~~--~~~~~~~~~~~L-~i~~v~~~D~------G~Y~C~a~n~~g~~~~~--s~~~~l~v~~~~~~~~~~~~~~~  403 (813)
                      .++....  ........+|-+ .++-++.++.      =..+|.+.-........  +....-.|+.+|.+         
T Consensus       277 ~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy~~P~I---------  347 (486)
T PHA03273        277 KEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVFVAPTV---------  347 (486)
T ss_pred             eeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeeccccccCccccCCeE---------
Confidence            9865211  222333334422 2222323322      37899988654432221  22233334433321         


Q ss_pred             CCCCCcCCCCCCcEEEEEEEeecCC--CeeeEeecC
Q psy14896        404 PKTFPEAPKAGDKVRLECVAFGYPV--PSYNWTRRG  437 (813)
Q Consensus       404 ~~~~~~~v~~g~~~~l~C~~~g~p~--p~i~W~~~~  437 (813)
                          ...+..|.-   .|.+.-.|.  ..+.|+-++
T Consensus       348 ----s~~F~~G~A---VCtA~CVP~egV~l~W~v~D  376 (486)
T PHA03273        348 ----SVTVEDGDA---VCTAKCVPSTGVFVSWSVND  376 (486)
T ss_pred             ----EEEEeCCEE---EEecccccCCCeeEEEEccC
Confidence                223444443   376666665  589998877

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.13  E-value=0.00036  Score=57.56  Aligned_cols=69  Identities=13%  Similarity=0.095  Sum_probs=43.9

Q ss_pred             eccCCCceEEeCCCCCCC-ccEEEEccCCCCCcccC-CCeEEEeeCccEE------EEeecccCCeeEEEEEEeeec
Q psy14896        580 GNQNWGKAMFCDPPTNYP-GVNYYWARDYFPNFVEE-DKRVFVSYDGALY------FSALEQIDAGNYSCNVQSKVS  648 (813)
Q Consensus       580 ~~~g~~~~l~C~~~~~~p-~~~v~W~k~~~~~~~~~-~~~~~~~~~~~L~------i~~~~~~d~G~Y~C~a~n~~g  648 (813)
                      ...+..++|.|.+...+| ...|+|+|||.++.... ........+|++.      +..-..++...|+|.+.+...
T Consensus        14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l   90 (100)
T cd07699          14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGL   90 (100)
T ss_pred             HccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCC
Confidence            335677899999966677 57899999997642111 1112223466643      333333457899999998753

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.07  E-value=0.0016  Score=52.87  Aligned_cols=68  Identities=12%  Similarity=0.146  Sum_probs=45.3

Q ss_pred             ccCCCceEEeCCCCCCCcc-EEEEccCCCCCccc-CCCeEEEeeCccEEE---EeecccCCeeEEEEEEeeec
Q psy14896        581 NQNWGKAMFCDPPTNYPGV-NYYWARDYFPNFVE-EDKRVFVSYDGALYF---SALEQIDAGNYSCNVQSKVS  648 (813)
Q Consensus       581 ~~g~~~~l~C~~~~~~p~~-~v~W~k~~~~~~~~-~~~~~~~~~~~~L~i---~~~~~~d~G~Y~C~a~n~~g  648 (813)
                      ..++.++|.|.+.+-+|.. .++|+|||.++... .........+|++.+   -.+...+...|+|.+.+...
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l   84 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSL   84 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCC
Confidence            3578899999996667764 89999999764321 112233345566433   23455677799999998764

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.07  E-value=0.0011  Score=54.90  Aligned_cols=63  Identities=19%  Similarity=0.448  Sum_probs=42.1

Q ss_pred             CCCCCeEEEEEEecCCCCC--eEEEEeCCcccCCCce------eee-------cceEEEECCCCCCCCEEEEEEEEcC
Q psy14896        684 PKAGDKVRLECVAFGYPVP--SYNWTRRGSPLPRNAY------FEN-------FNRILTIPNVKVEDQGEYICRASND  746 (813)
Q Consensus       684 ~~~G~~v~l~C~~~g~P~p--~i~W~k~g~~l~~~~~------~~~-------~~~~L~i~~v~~~d~G~Y~C~a~N~  746 (813)
                      +..|+.++|.|.|.|+-++  .++|+|||+++.....      ...       -.+.|.|..-...+...|+|++...
T Consensus        13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~   90 (102)
T cd05768          13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHE   90 (102)
T ss_pred             hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeC
Confidence            3457889999999996543  6899999998754321      011       1234666444445666899999875

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.04  E-value=0.0019  Score=55.51  Aligned_cols=65  Identities=22%  Similarity=0.228  Sum_probs=44.3

Q ss_pred             cCCCCCCeEEEEEEecCCC------CCeEEEEeCCc-----ccC---C-C--------cee------eecceEEEECCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYP------VPSYNWTRRGS-----PLP---R-N--------AYF------ENFNRILTIPNVK  732 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P------~p~i~W~k~g~-----~l~---~-~--------~~~------~~~~~~L~i~~v~  732 (813)
                      +.+.+|++|+|.|.....+      ...+.|||...     .+.   . .        .++      ...+..|+|.+++
T Consensus         9 v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~l~   88 (119)
T cd05712           9 VSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISDAQ   88 (119)
T ss_pred             EEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEccCC
Confidence            5678999999999875321      24699998532     100   0 0        111      1123579999999


Q ss_pred             CCCCEEEEEEEEcC
Q psy14896        733 VEDQGEYICRASND  746 (813)
Q Consensus       733 ~~d~G~Y~C~a~N~  746 (813)
                      .+|+|.|.|.+...
T Consensus        89 ~~Dsg~Y~C~~~~~  102 (119)
T cd05712          89 PEDSGKYFFRVELG  102 (119)
T ss_pred             hhhCeEEEEEEEcC
Confidence            99999999988653

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.03  E-value=0.0014  Score=52.93  Aligned_cols=67  Identities=13%  Similarity=0.185  Sum_probs=45.0

Q ss_pred             ccCCCceEEeCCCCCCCc-cEEEEccCCCCCcccCCCeEEEeeCccEEEE---eecccCCeeEEEEEEeee
Q psy14896        581 NQNWGKAMFCDPPTNYPG-VNYYWARDYFPNFVEEDKRVFVSYDGALYFS---ALEQIDAGNYSCNVQSKV  647 (813)
Q Consensus       581 ~~g~~~~l~C~~~~~~p~-~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~---~~~~~d~G~Y~C~a~n~~  647 (813)
                      ..|...+|.|.+..-+|. ..|+|+|||.++.-..........|++..+.   .+...+...|+|.+.+..
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~   83 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS   83 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence            346667899999554664 6899999998743111122334556775433   456778889999999854

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.02  E-value=0.0038  Score=50.73  Aligned_cols=60  Identities=17%  Similarity=0.354  Sum_probs=40.8

Q ss_pred             CCCCeEEEEEEecCC-CCC-eEEEEeCCcccCCCc----eeeec------ceEEEECCCCCCCCEEEEEEEEcCC
Q psy14896        685 KAGDKVRLECVAFGY-PVP-SYNWTRRGSPLPRNA----YFENF------NRILTIPNVKVEDQGEYICRASNDR  747 (813)
Q Consensus       685 ~~G~~v~l~C~~~g~-P~p-~i~W~k~g~~l~~~~----~~~~~------~~~L~i~~v~~~d~G~Y~C~a~N~~  747 (813)
                      ..|+.++|.|.+.|+ |.. .++|+|||+++..+.    .....      .+.|.+.   ..+...|+|++....
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~---~~~~~~ysC~V~H~~   83 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETT---PSRGDTYTCVVEHSS   83 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEc---CCCCCEEEEEEEeCC
Confidence            468899999999984 543 899999999876541    11111      2234443   345669999998764

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.01  E-value=0.004  Score=53.57  Aligned_cols=78  Identities=22%  Similarity=0.289  Sum_probs=46.4

Q ss_pred             CCceeecCCCccccccEEEEeeeccCC------CCeEEEeecccc-----cccccc--cccccCCCccEEee------CC
Q psy14896        196 PTDVVFDLSKRSILNDITLSCYAGGYP------NPSYEWFKEDYV-----QDRLVA--NLIDPLSDKRFTLS------GG  256 (813)
Q Consensus       196 p~~~~v~~g~~~~g~~v~l~C~~~g~P------~p~v~W~k~g~~-----l~~~~~--~~~~~~~~~~~~~~------~~  256 (813)
                      |..+.+.+|     +.|+|.|.....+      ...+.|||....     +.....  .........|+...      +.
T Consensus         6 P~~v~~~~G-----~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~   80 (119)
T cd05712           6 PKSVSVQEG-----LCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNC   80 (119)
T ss_pred             CCEEEEecc-----ccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEE
Confidence            455666666     7799999865311      246999997531     100000  01111222355441      23


Q ss_pred             eEEEcCCccccCCeeEEEEeecC
Q psy14896        257 NLIINDPRQVEDRGSYHCKASNK  279 (813)
Q Consensus       257 ~l~i~~~~~~~d~G~Y~C~a~n~  279 (813)
                      +|.|.+. +.+|+|.|.|.+...
T Consensus        81 sL~I~~l-~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          81 SLLISDA-QPEDSGKYFFRVELG  102 (119)
T ss_pred             EEEEccC-ChhhCeEEEEEEEcC
Confidence            5888885 999999999998653

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=96.92  E-value=0.0018  Score=47.01  Aligned_cols=50  Identities=28%  Similarity=0.505  Sum_probs=33.4

Q ss_pred             cccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecC
Q psy14896        209 LNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNK  279 (813)
Q Consensus       209 g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~  279 (813)
                      |.+|+|+|...+.   .+.|++|+..+.           +     .+..+++.+- . ++.|.|.|.+.+.
T Consensus         7 GTtVtlTCP~~~~---~i~W~~n~~~~~-----------g-----~~~~~~~~~~-~-e~~G~Y~C~~~~~   56 (65)
T cd07692           7 GTTVTVTCPLSGD---DIKWKKNDQVSQ-----------G-----SDEKYLSLNH-F-SSSGYYHCTADNA   56 (65)
T ss_pred             ccEEEEECCCCCC---CceEEeCCccCC-----------C-----CCceEEeecc-C-CCCceEEEEeCCC
Confidence            4669999987542   399999996431           1     1223334343 4 8999999999754

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.92  E-value=0.0025  Score=51.91  Aligned_cols=25  Identities=16%  Similarity=0.478  Sum_probs=20.4

Q ss_pred             ccEEEEeeeccC--CC-CeEEEeecccc
Q psy14896        210 NDITLSCYAGGY--PN-PSYEWFKEDYV  234 (813)
Q Consensus       210 ~~v~l~C~~~g~--P~-p~v~W~k~g~~  234 (813)
                      +.++|.|.+.|.  |. ..|+|.|||++
T Consensus        15 ~~~tLtC~v~gf~yP~~i~v~W~r~~~~   42 (96)
T cd07696          15 KSVKLTCLVTNLTSPEGVNVTWTRGSGE   42 (96)
T ss_pred             CCeEEEEEEeCCCCCCCcEEEEEECCeE
Confidence            669999999987  53 48999999753

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=96.90  E-value=0.0056  Score=49.58  Aligned_cols=66  Identities=21%  Similarity=0.312  Sum_probs=40.5

Q ss_pred             ccEEEEeeecc-CCC-CeEEEeeccccccccc-ccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCc
Q psy14896        210 NDITLSCYAGG-YPN-PSYEWFKEDYVQDRLV-ANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKF  280 (813)
Q Consensus       210 ~~v~l~C~~~g-~P~-p~v~W~k~g~~l~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~  280 (813)
                      +.++|.|.|.| .|. ..++|.|||+++.... ...+.+..+..|... ..|.+.    .++...|+|.+....
T Consensus        16 ~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~-s~L~v~----~~~~~~ytC~V~H~~   84 (94)
T cd05767          16 EPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKF-SYLNFT----PEEGDIYSCIVEHWG   84 (94)
T ss_pred             CCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEE-EEEEEE----CCCCCeEEEEEEeCC
Confidence            55899999998 464 5899999998764321 111222333333332 223332    346679999998753

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=96.89  E-value=0.0035  Score=53.62  Aligned_cols=64  Identities=25%  Similarity=0.466  Sum_probs=44.2

Q ss_pred             cCCCCCCeEEEEEEecCCC--CCeEEEEeC--Cc-c--c---CC-----------Cceeee------cceEEEECCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYP--VPSYNWTRR--GS-P--L---PR-----------NAYFEN------FNRILTIPNVKVE  734 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P--~p~i~W~k~--g~-~--l---~~-----------~~~~~~------~~~~L~i~~v~~~  734 (813)
                      ..+.+|++|+|.|...+.-  ...+.|||-  |+ +  |   ..           ..++..      ....|+|.+++.+
T Consensus         7 ~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~   86 (117)
T cd04981           7 GLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTPE   86 (117)
T ss_pred             eEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCHH
Confidence            5678999999999886533  357999983  22 2  1   00           112211      1236999999999


Q ss_pred             CCEEEEEEEEc
Q psy14896        735 DQGEYICRASN  745 (813)
Q Consensus       735 d~G~Y~C~a~N  745 (813)
                      |+|.|.|.+..
T Consensus        87 Dsa~YyCa~~~   97 (117)
T cd04981          87 DTAVYYCARGL   97 (117)
T ss_pred             HCEEEEEEEEc
Confidence            99999998864

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=96.89  E-value=0.0012  Score=53.63  Aligned_cols=67  Identities=13%  Similarity=0.174  Sum_probs=41.6

Q ss_pred             cCCCceEEeCCCCCCCc-cEEEEccCCCCCccc-CCCeEEEeeCcc------EEEEeecccCCeeEEEEEEeeec
Q psy14896        582 QNWGKAMFCDPPTNYPG-VNYYWARDYFPNFVE-EDKRVFVSYDGA------LYFSALEQIDAGNYSCNVQSKVS  648 (813)
Q Consensus       582 ~g~~~~l~C~~~~~~p~-~~v~W~k~~~~~~~~-~~~~~~~~~~~~------L~i~~~~~~d~G~Y~C~a~n~~g  648 (813)
                      ....++|.|.+..-+|. ..|+|+|||.+.... .........+++      |.|..-...+...|+|.+.+...
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~   87 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGT   87 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCe
Confidence            34568999999655775 789999999763111 111122334455      33333333466799999998764

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=96.85  E-value=0.0032  Score=45.94  Aligned_cols=59  Identities=22%  Similarity=0.376  Sum_probs=38.4

Q ss_pred             ccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeeeeE
Q psy14896        210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQ  289 (813)
Q Consensus       210 ~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~  289 (813)
                      ++|.|+|.+.    .+|.|+| |.++..               ..+.+|-+-+. ..+-.|.|.|.+++.     +.+..
T Consensus         7 ~~V~L~C~~~----tsi~W~k-G~~~~~---------------~~~~tlnLGs~-~~DPRG~Y~C~~s~~-----~~~~~   60 (69)
T cd07691           7 GKVFLKCNGA----TNITWKK-GKEILE---------------VSNTLLDLGSR-INDPRGTYSCKESEP-----NKEKT   60 (69)
T ss_pred             ceEEEEecCC----CcEEEec-Cccccc---------------ccccEEeccCc-ccCCCcceEecCccC-----CCcEE
Confidence            4599999762    4699999 654421               11334544443 567799999999872     34566


Q ss_pred             Eeeee
Q psy14896        290 LAFGF  294 (813)
Q Consensus       290 l~v~~  294 (813)
                      |+|.+
T Consensus        61 LQVyY   65 (69)
T cd07691          61 LQVYY   65 (69)
T ss_pred             EEEEE
Confidence            66655

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=96.85  E-value=0.0024  Score=51.54  Aligned_cols=65  Identities=14%  Similarity=0.180  Sum_probs=44.0

Q ss_pred             CCCeEEEecCCCCCCc-ceEEEeeccccccccCCccEEEccCccEEEee---eeecCCeeeEEEEeeec
Q psy14896        310 NWGKAMFCDPPTNYPG-VNYYWARDYFPNFVEEDKRVFVSYDGALYFSA---LEQIDAGNYSCNVQSKV  374 (813)
Q Consensus       310 ~~~~~l~C~~~~~~p~-~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~---v~~~D~G~Y~C~a~n~~  374 (813)
                      |...+|.|.+.+-+|. ..++|+|||+++.-.....+....+++..+..   +.+.+...|+|.+....
T Consensus        15 g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~   83 (93)
T cd05770          15 GKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS   83 (93)
T ss_pred             CCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence            4556899998776776 79999999998641112233344566655433   45677789999998743

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=96.78  E-value=0.0051  Score=48.88  Aligned_cols=61  Identities=25%  Similarity=0.538  Sum_probs=42.9

Q ss_pred             CCCCeEEEEEEecCC-CCC-eEEEEeCCcccCCCceee----ec------ceEEEECCCCCCCCEEEEEEEEcCCC
Q psy14896        685 KAGDKVRLECVAFGY-PVP-SYNWTRRGSPLPRNAYFE----NF------NRILTIPNVKVEDQGEYICRASNDRS  748 (813)
Q Consensus       685 ~~G~~v~l~C~~~g~-P~p-~i~W~k~g~~l~~~~~~~----~~------~~~L~i~~v~~~d~G~Y~C~a~N~~G  748 (813)
                      ..++.++|.|.+.|+ |.. .|+|+++|..+.......    ..      .+.|.+.   ..+...|+|++.+...
T Consensus         6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l   78 (83)
T PF07654_consen    6 ELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL   78 (83)
T ss_dssp             HSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred             cCCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence            348999999999985 543 799999999876543211    11      2346665   5666699999988643

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>smart00406 IGv Immunoglobulin V-Type

Probab=96.74  E-value=0.0036  Score=49.50  Aligned_cols=55  Identities=33%  Similarity=0.585  Sum_probs=37.1

Q ss_pred             eEEEEEEecCCCCC--eEEEEeCCc--c---cC-------------CCceee------ecceEEEECCCCCCCCEEEEEE
Q psy14896        689 KVRLECVAFGYPVP--SYNWTRRGS--P---LP-------------RNAYFE------NFNRILTIPNVKVEDQGEYICR  742 (813)
Q Consensus       689 ~v~l~C~~~g~P~p--~i~W~k~g~--~---l~-------------~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~  742 (813)
                      +|+|.|.+.....+  .+.|++...  .   +.             ...++.      ....+|+|.+++.+|+|.|.|.
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            47899999865543  899998542  1   00             011111      2235699999999999999996


Q ss_pred             E
Q psy14896        743 A  743 (813)
Q Consensus       743 a  743 (813)
                      +
T Consensus        81 v   81 (81)
T smart00406       81 V   81 (81)
T ss_pred             C
Confidence            3

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=96.72  E-value=0.0035  Score=49.85  Aligned_cols=68  Identities=22%  Similarity=0.478  Sum_probs=40.2

Q ss_pred             cccEEEEeeecc-CCCC-eEEEeeccccccccccccccc-CCCccEEeeCCeEEEcCCccccCCeeEEEEeecCce
Q psy14896        209 LNDITLSCYAGG-YPNP-SYEWFKEDYVQDRLVANLIDP-LSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFG  281 (813)
Q Consensus       209 g~~v~l~C~~~g-~P~p-~v~W~k~g~~l~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g  281 (813)
                      ++.++|.|.+.| .|.. .|.|++||+.+.......... ..+..|... ..|.+.    ..+...|+|++.+...
T Consensus         8 ~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~-s~l~v~----~~~~~~ysC~V~H~~l   78 (83)
T PF07654_consen    8 GGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVT-SSLTVT----WNSGDEYSCRVTHESL   78 (83)
T ss_dssp             TSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEE-EEEEEE----TTTTGGEEEEEEETTS
T ss_pred             CCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeee-EEEEec----CCCCCEEEEEEEECCC
Confidence            367999999987 5654 899999998764322111111 122222221 122222    4566689999987644

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=96.68  E-value=0.0031  Score=51.04  Aligned_cols=66  Identities=17%  Similarity=0.242  Sum_probs=41.7

Q ss_pred             cCCCceEEeCCCCCCCc-cEEEEccCCCCCccc-CCCeEEEeeCccEEE---EeecccCCeeEEEEEEeee
Q psy14896        582 QNWGKAMFCDPPTNYPG-VNYYWARDYFPNFVE-EDKRVFVSYDGALYF---SALEQIDAGNYSCNVQSKV  647 (813)
Q Consensus       582 ~g~~~~l~C~~~~~~p~-~~v~W~k~~~~~~~~-~~~~~~~~~~~~L~i---~~~~~~d~G~Y~C~a~n~~  647 (813)
                      .++..+|.|.+..-+|. ..++|.|||.++... .........||+..+   ..+.+++...|+|.+.+..
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~~~~~~ytC~V~H~~   84 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTPEEGDIYSCIVEHWG   84 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEECCCCCeEEEEEEeCC
Confidence            35567999999655664 789999999763211 111223345665322   1334567779999998864

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=96.66  E-value=0.0075  Score=48.66  Aligned_cols=68  Identities=10%  Similarity=0.258  Sum_probs=45.2

Q ss_pred             ceeecCCCeEE-EecCCCCCCcceEEEeeccccccccCCccEEEccCcc------EEEeeeeecCCeeeEEEEeeecc
Q psy14896        305 EIGNQNWGKAM-FCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA------LYFSALEQIDAGNYSCNVQSKVS  375 (813)
Q Consensus       305 ~~~~~~~~~~l-~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~------L~i~~v~~~D~G~Y~C~a~n~~g  375 (813)
                      ..+.+|+...+ .|.+..|.|.++|+|+.+....   .........+|+      |.+..-..+|.-.++|++.+...
T Consensus        11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~---~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al   85 (97)
T cd07704          11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGT---SESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL   85 (97)
T ss_pred             eEeecCcceeEEEEEccCCccCCEeEEeCCCCCc---cceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence            34556677777 8999999999999999874432   112223334443      44444445566699999998754

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=96.66  E-value=0.0052  Score=51.77  Aligned_cols=67  Identities=16%  Similarity=0.341  Sum_probs=45.5

Q ss_pred             CCCCeEEEEEEecCC-CC-CeEEEEeCCcccCCCce-----ee------ecceEEEECCCCCCC-CEEEEEEEEcCCCce
Q psy14896        685 KAGDKVRLECVAFGY-PV-PSYNWTRRGSPLPRNAY-----FE------NFNRILTIPNVKVED-QGEYICRASNDRSAL  750 (813)
Q Consensus       685 ~~G~~v~l~C~~~g~-P~-p~i~W~k~g~~l~~~~~-----~~------~~~~~L~i~~v~~~d-~G~Y~C~a~N~~G~~  750 (813)
                      ..++.++|.|.+.|+ |. ..|+|+|||+.+..+..     ..      ...+.|.|......| .-.|+|.+.......
T Consensus        16 ~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~~   95 (115)
T cd05769          16 RNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGTD   95 (115)
T ss_pred             ccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCcc
Confidence            456789999999985 54 38999999988764421     11      113457776655544 569999998874443


Q ss_pred             E
Q psy14896        751 E  751 (813)
Q Consensus       751 ~  751 (813)
                      .
T Consensus        96 ~   96 (115)
T cd05769          96 T   96 (115)
T ss_pred             c
Confidence            3

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=96.65  E-value=0.0069  Score=48.85  Aligned_cols=68  Identities=10%  Similarity=0.258  Sum_probs=47.5

Q ss_pred             ceeccCCCceE-EeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCcc------EEEEeecccCCeeEEEEEEeeec
Q psy14896        578 EIGNQNWGKAM-FCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA------LYFSALEQIDAGNYSCNVQSKVS  648 (813)
Q Consensus       578 ~~~~~g~~~~l-~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~------L~i~~~~~~d~G~Y~C~a~n~~g  648 (813)
                      ..+.+|..+.+ .|.+..|.|++.|+|+.+....  . ........+|+      |.+.....+|.-.++|.+.+..-
T Consensus        11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~--~-~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al   85 (97)
T cd07704          11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGT--S-ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL   85 (97)
T ss_pred             eEeecCcceeEEEEEccCCccCCEeEEeCCCCCc--c-ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence            34567788888 9999899999999999874321  1 12223334554      55555566788899999998864

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=96.63  E-value=0.0041  Score=53.19  Aligned_cols=70  Identities=16%  Similarity=0.250  Sum_probs=46.2

Q ss_pred             CCceeccCCCceEEeCCCCCC-CccEEEEccCC---CCCcc--------------cCCCeEEEeeCc-----cEEEEeec
Q psy14896        576 APEIGNQNWGKAMFCDPPTNY-PGVNYYWARDY---FPNFV--------------EEDKRVFVSYDG-----ALYFSALE  632 (813)
Q Consensus       576 ~~~~~~~g~~~~l~C~~~~~~-p~~~v~W~k~~---~~~~~--------------~~~~~~~~~~~~-----~L~i~~~~  632 (813)
                      ....+.+|+.++|.|...... -...+.|||-.   .+..+              ....|+....+.     .|+|.++.
T Consensus         5 ~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   84 (117)
T cd04981           5 GPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLT   84 (117)
T ss_pred             CCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCC
Confidence            445678899999999863221 24569999842   22110              012355554322     49999999


Q ss_pred             ccCCeeEEEEEEe
Q psy14896        633 QIDAGNYSCNVQS  645 (813)
Q Consensus       633 ~~d~G~Y~C~a~n  645 (813)
                      .+|+|.|.|.+..
T Consensus        85 ~~Dsa~YyCa~~~   97 (117)
T cd04981          85 PEDTAVYYCARGL   97 (117)
T ss_pred             HHHCEEEEEEEEc
Confidence            9999999998854

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.57  E-value=0.015  Score=46.59  Aligned_cols=66  Identities=23%  Similarity=0.399  Sum_probs=45.2

Q ss_pred             cCCCCCCeEEEEEEec-CCCC--CeEEEEeCCcccCCCceee--------ecceEEEECCCCCCCCE-EEEEEEEcCCC
Q psy14896        682 EAPKAGDKVRLECVAF-GYPV--PSYNWTRRGSPLPRNAYFE--------NFNRILTIPNVKVEDQG-EYICRASNDRS  748 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~-g~P~--p~i~W~k~g~~l~~~~~~~--------~~~~~L~i~~v~~~d~G-~Y~C~a~N~~G  748 (813)
                      ..+.+|..+++.|.+. +.|.  ..|.|+|+...+.......        .....+++.. +.+|.| .|+|.|.-.++
T Consensus        10 ~~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~l~   87 (99)
T cd07689          10 GPLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLHID   87 (99)
T ss_pred             CcccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEeec
Confidence            3457899999999998 4554  5899999777665443222        1224566655 477777 99999975543

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.45  E-value=0.0068  Score=50.13  Aligned_cols=71  Identities=13%  Similarity=0.341  Sum_probs=42.2

Q ss_pred             cccCeEEEEEeeccCCC--cEEEeeccccccceeccccCCCC----CceEEeeCCeEEEeCCCCCCCCceEEEEEEcCc
Q psy14896        481 ILNDITLSCYAGGYPNP--SYEWFKEDYVQDRLVANLIDPLS----DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKF  553 (813)
Q Consensus       481 ~g~~~~l~C~~~g~p~~--~v~W~k~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~  553 (813)
                      .++.++|.|.+.|+-+.  .++|+|||+++.........+..    +..+.. ...|.+... ...+...|+|.+....
T Consensus        15 ~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~-~s~L~v~~~-~w~~~~~ytC~V~H~~   91 (102)
T cd05768          15 LQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFL-YSKLTVSAE-DWNAGDVFTCVVGHEA   91 (102)
T ss_pred             cCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEE-EEEEEEcHH-HhcCCCcEEEEeEeCC
Confidence            46789999999995443  67999999875432111111211    122222 234555442 3345678999998764

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA02673 ORF109 EEV glycoprotein; Provisional

Probab=96.44  E-value=0.0027  Score=54.44  Aligned_cols=51  Identities=20%  Similarity=0.359  Sum_probs=39.7

Q ss_pred             CCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHh
Q psy14896         27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL   81 (813)
Q Consensus        27 ~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~   81 (813)
                      ..|..  ..|+++||.+. ++ ++|++|...|...|+.|-+..-.+..-+|..++
T Consensus        75 ~tC~G--I~~~~~Cltl~-~p-~tf~eAn~~C~~~g~~LPs~~l~~~~pWL~dYL  125 (161)
T PHA02673         75 RTCDG--INAGNKCLTLK-YP-DTWTNANERCKELGQRLPSPSINKKYPWLTDYL  125 (161)
T ss_pred             CcCCC--cccCCeeEEeC-CC-CcHHHHHHHHHhcCCcCCCCcccccCcHHHHHh
Confidence            45653  36689999999 65 899999999999999999866554445666665

>smart00406 IGv Immunoglobulin V-Type

Probab=96.39  E-value=0.0085  Score=47.31  Aligned_cols=64  Identities=30%  Similarity=0.457  Sum_probs=37.9

Q ss_pred             EEEEeeeccCCC--CeEEEeeccc--ccccccc-----ccc-ccCCCccEEee-C-----CeEEEcCCccccCCeeEEEE
Q psy14896        212 ITLSCYAGGYPN--PSYEWFKEDY--VQDRLVA-----NLI-DPLSDKRFTLS-G-----GNLIINDPRQVEDRGSYHCK  275 (813)
Q Consensus       212 v~l~C~~~g~P~--p~v~W~k~g~--~l~~~~~-----~~~-~~~~~~~~~~~-~-----~~l~i~~~~~~~d~G~Y~C~  275 (813)
                      |.|.|.+.....  ..+.||+...  ...-...     ... ......|+... .     .+|.|.+. +.+|+|.|.|.
T Consensus         2 v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~-~~~D~G~Y~C~   80 (81)
T smart00406        2 VTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNL-RVEDTGTYYCA   80 (81)
T ss_pred             EEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCC-CHHHCEEEEEc
Confidence            889999976444  3899999763  1110000     011 11223455432 1     34777775 89999999996


Q ss_pred             e
Q psy14896        276 A  276 (813)
Q Consensus       276 a  276 (813)
                      +
T Consensus        81 v   81 (81)
T smart00406       81 V   81 (81)
T ss_pred             C
Confidence            4

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=96.28  E-value=0.021  Score=46.37  Aligned_cols=60  Identities=13%  Similarity=0.203  Sum_probs=38.4

Q ss_pred             CCCCeEEEEEEecCC-CC-CeEEEEeCCcccCCCce----eeec-----ceEEEECCCCCCCCEEEEEEEEcC
Q psy14896        685 KAGDKVRLECVAFGY-PV-PSYNWTRRGSPLPRNAY----FENF-----NRILTIPNVKVEDQGEYICRASND  746 (813)
Q Consensus       685 ~~G~~v~l~C~~~g~-P~-p~i~W~k~g~~l~~~~~----~~~~-----~~~L~i~~v~~~d~G~Y~C~a~N~  746 (813)
                      ..+..++|.|.|.|+ |. ..++|.|||..+..+..    ....     .+.|+|..-.  ....|+|.+...
T Consensus        14 ~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~   84 (96)
T cd07697          14 EKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHE   84 (96)
T ss_pred             ccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEEC
Confidence            346789999999985 53 37899999998754321    1111     2345554332  233599999874

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.28  E-value=0.011  Score=48.13  Aligned_cols=63  Identities=16%  Similarity=0.301  Sum_probs=40.8

Q ss_pred             CCCCCeEEEEEEecCC--CC-CeEEEEeCCcccCCC--------ceeeecceEEEECCCCCCCCEEEEEEEEcCC
Q psy14896        684 PKAGDKVRLECVAFGY--PV-PSYNWTRRGSPLPRN--------AYFENFNRILTIPNVKVEDQGEYICRASNDR  747 (813)
Q Consensus       684 ~~~G~~v~l~C~~~g~--P~-p~i~W~k~g~~l~~~--------~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~  747 (813)
                      ...+..++|.|.+.|+  |. ..|+|.++|+. ...        +..-.-.+.|.|..-...-...|+|++.+..
T Consensus        16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~   89 (99)
T cd04986          16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPE   89 (99)
T ss_pred             hCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCC
Confidence            4468899999999984  43 48999999875 110        0001113457766444444557999998864

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=96.25  E-value=1.5  Score=44.38  Aligned_cols=116  Identities=19%  Similarity=0.236  Sum_probs=75.3

Q ss_pred             cCCCCCCeEEEEEEec--CCCC-CeEEEEeCCcccCCC-----------------cee----------eecceEEEECCC
Q psy14896        682 EAPKAGDKVRLECVAF--GYPV-PSYNWTRRGSPLPRN-----------------AYF----------ENFNRILTIPNV  731 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~--g~P~-p~i~W~k~g~~l~~~-----------------~~~----------~~~~~~L~i~~v  731 (813)
                      ..+..|.+|.|.|..+  |+-. ..++|+--|-++.+-                 ..+          ....++|+|+++
T Consensus       274 ~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka  353 (500)
T PHA02914        274 VMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKA  353 (500)
T ss_pred             eEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeE
Confidence            4567799999999986  5443 479999776654311                 000          122568999999


Q ss_pred             CCCCCEEEEEEEEcCCCceEEEEEEEEEcCCcccccCCceeecCC-CeEEEEEEEccc--CCceEEEEECCEecc
Q psy14896        732 KVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQ-ADLTWTCEAFGV--PDVTYSWFRNGELGH  803 (813)
Q Consensus       732 ~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~~~~~~~~~~~~~g-~~~~l~C~~~g~--p~~~v~W~k~g~~l~  803 (813)
                      ..+.+|-|+|+|.-+.-..+..--|.|...-.+.-      -.+| ..-...|-+...  -++.+.|.-+|....
T Consensus       354 ~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~V~f~W------~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~  422 (500)
T PHA02914        354 HINNAGCYEAQAFMGKFKEECRHCFKVADHVFFKW------NTEGDNETKVACYAAQYDMQPFSILWKSNGVSFG  422 (500)
T ss_pred             EEEcCCceEEEEecCcchhhhhhheEeccEEEEEE------EeccCceEEEEEEEEecccCCceeEEEEccEEec
Confidence            99999999999987654555555666654332221      1122 233566877543  356799998886543

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.24  E-value=0.012  Score=47.79  Aligned_cols=61  Identities=20%  Similarity=0.525  Sum_probs=39.0

Q ss_pred             CCCeEEEEEEecCC-CC-CeEEEEeCCcccCCCce-----ee-ec----ceEEEECCCCCCCCEEEEEEEEcCC
Q psy14896        686 AGDKVRLECVAFGY-PV-PSYNWTRRGSPLPRNAY-----FE-NF----NRILTIPNVKVEDQGEYICRASNDR  747 (813)
Q Consensus       686 ~G~~v~l~C~~~g~-P~-p~i~W~k~g~~l~~~~~-----~~-~~----~~~L~i~~v~~~d~G~Y~C~a~N~~  747 (813)
                      .++.++|.|.|.|+ |. ..|+|+|||++ ..+..     .. +.    .+.|++..-.....-.|+|++....
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            46679999999985 43 48899999997 33211     11 11    2345555443333568999998753

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=96.24  E-value=0.019  Score=46.67  Aligned_cols=65  Identities=11%  Similarity=0.141  Sum_probs=36.8

Q ss_pred             ccEEEEeeecc-CC-CCeEEEeecccccccccc-cccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecC
Q psy14896        210 NDITLSCYAGG-YP-NPSYEWFKEDYVQDRLVA-NLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNK  279 (813)
Q Consensus       210 ~~v~l~C~~~g-~P-~p~v~W~k~g~~l~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~  279 (813)
                      +.++|.|.|.| .| ...|+|.|||+.+..... ....+..+ .|.. ...|.+...   +....|+|.+...
T Consensus        17 ~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~d-ty~~-~S~L~vt~~---~~~~~ysC~V~H~   84 (96)
T cd07697          17 GQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDND-VYST-TSWLTVTKD---SLGKKFRCIYKHE   84 (96)
T ss_pred             CCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCC-EEEE-EEEEEECch---hCCCeEEEEEEEC
Confidence            45999999998 46 448999999987643221 11112222 2222 122333221   2344599999874

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=96.20  E-value=0.01  Score=50.02  Aligned_cols=71  Identities=21%  Similarity=0.334  Sum_probs=39.9

Q ss_pred             ccEEEEeeecc-CCC-CeEEEeecccccccccccc-cccCC-CccEEeeCCeEEEcCCccccC-CeeEEEEeecCcee
Q psy14896        210 NDITLSCYAGG-YPN-PSYEWFKEDYVQDRLVANL-IDPLS-DKRFTLSGGNLIINDPRQVED-RGSYHCKASNKFGS  282 (813)
Q Consensus       210 ~~v~l~C~~~g-~P~-p~v~W~k~g~~l~~~~~~~-~~~~~-~~~~~~~~~~l~i~~~~~~~d-~G~Y~C~a~n~~g~  282 (813)
                      +.++|.|.+.| .|. ..|+|+|||+++....... ..... +..|.. ...|.+... ...| ...|+|.+......
T Consensus        19 ~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~-~S~L~v~~~-~w~~~~~~ytC~V~H~g~~   94 (115)
T cd05769          19 RKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSI-SSRLRVSAT-EWFNPRNTFTCIVQFYGGT   94 (115)
T ss_pred             CCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEE-EEEEEEChH-HhccCCCeEEEEEEEeCCc
Confidence            55999999988 466 4899999998775332110 00111 112221 222343321 2223 67899999876443

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=96.13  E-value=0.0039  Score=52.80  Aligned_cols=75  Identities=13%  Similarity=0.227  Sum_probs=47.6

Q ss_pred             CCCCCeEEEEEEecCC-----CCCeEEEEeCCcccCCCc-----------------eeeecceEEEECCCCCCCCEEEEE
Q psy14896        684 PKAGDKVRLECVAFGY-----PVPSYNWTRRGSPLPRNA-----------------YFENFNRILTIPNVKVEDQGEYIC  741 (813)
Q Consensus       684 ~~~G~~v~l~C~~~g~-----P~p~i~W~k~g~~l~~~~-----------------~~~~~~~~L~i~~v~~~d~G~Y~C  741 (813)
                      ..-+++|.|.|.+...     +...|+|.++|..+-.-+                 .+..++.+|.+...+.- .|.|+|
T Consensus        24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTC  102 (130)
T PF08204_consen   24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTC  102 (130)
T ss_dssp             -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEE
T ss_pred             EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEE
Confidence            4578999999999752     234799999988662111                 01123456888775555 899999


Q ss_pred             EEEcCCCceEEEEEEEEE
Q psy14896        742 RASNDRSALESSVTISIQ  759 (813)
Q Consensus       742 ~a~N~~G~~~~~~~l~V~  759 (813)
                      .|.+...+.+..+.|...
T Consensus       103 eVt~~~~ege~~i~Lk~~  120 (130)
T PF08204_consen  103 EVTELSREGETTIELKYR  120 (130)
T ss_dssp             EEEETTEEEEEEEEEEE-
T ss_pred             EEEecCCCceEEEEEEEE
Confidence            999887778888888774

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.10  E-value=0.013  Score=47.57  Aligned_cols=67  Identities=13%  Similarity=0.155  Sum_probs=41.4

Q ss_pred             eccCCCceEEeCCCCCC-C-ccEEEEccCCCCCcccCCCeEEEeeCccEEEEee---cc---cCCeeEEEEEEeeec
Q psy14896        580 GNQNWGKAMFCDPPTNY-P-GVNYYWARDYFPNFVEEDKRVFVSYDGALYFSAL---EQ---IDAGNYSCNVQSKVS  648 (813)
Q Consensus       580 ~~~g~~~~l~C~~~~~~-p-~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~---~~---~d~G~Y~C~a~n~~g  648 (813)
                      ...+..++|.|.+.+-+ | ...|+|.++|.+....  .......+|++.+...   ..   .-...|+|.+.+...
T Consensus        16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~~~~~--t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l   90 (99)
T cd04986          16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGKEAVQ--TSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG   90 (99)
T ss_pred             hCcCCccEEEEEEeccCCCCCeEEEEEECCccCcEE--cCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence            34577899999996545 5 4789999998651111  1122234666444332   22   333569999998764

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA02633 hypothetical protein; Provisional

Probab=96.09  E-value=0.016  Score=41.17  Aligned_cols=41  Identities=20%  Similarity=0.237  Sum_probs=34.5

Q ss_pred             ceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCCc
Q psy14896        723 NRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPN  763 (813)
Q Consensus       723 ~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~  763 (813)
                      ...|-|-++..+|+|.|.|+..|+-=....++.|.|...+.
T Consensus        17 ~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~~   57 (63)
T PHA02633         17 CNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRIE   57 (63)
T ss_pred             cccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeeccc
Confidence            45788999999999999999999866778888888876543

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=95.97  E-value=0.02  Score=45.83  Aligned_cols=68  Identities=12%  Similarity=0.057  Sum_probs=44.7

Q ss_pred             eeecCCCeEEEecCCCCCCc--ceEEEeeccccccccCCccEE------EccCccEEEeeeeecCCe-eeEEEEeeecc
Q psy14896        306 IGNQNWGKAMFCDPPTNYPG--VNYYWARDYFPNFVEEDKRVF------VSYDGALYFSALEQIDAG-NYSCNVQSKVS  375 (813)
Q Consensus       306 ~~~~~~~~~l~C~~~~~~p~--~~v~W~k~~~~~~~~~~~~~~------~~~~~~L~i~~v~~~D~G-~Y~C~a~n~~g  375 (813)
                      ...+|..+++.|.+..+.|.  .++.|+|++..+.... ..-.      ......+++.. +++|.| .|+|.|.-...
T Consensus        11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~-f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~l~   87 (99)
T cd07689          11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKS-FLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLHID   87 (99)
T ss_pred             cccCCceEEEEEEecCcccCCceEEEEecCcceecccc-cccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEeec
Confidence            34789999999999888888  8999999776532221 1100      00112455555 477776 99999975543

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=95.85  E-value=0.012  Score=47.76  Aligned_cols=65  Identities=12%  Similarity=0.184  Sum_probs=39.3

Q ss_pred             cCCCceEEeCCCCCCCc-cEEEEccCCCCCcccC-CCeEEEeeCccEEEE---eecccC---CeeEEEEEEeee
Q psy14896        582 QNWGKAMFCDPPTNYPG-VNYYWARDYFPNFVEE-DKRVFVSYDGALYFS---ALEQID---AGNYSCNVQSKV  647 (813)
Q Consensus       582 ~g~~~~l~C~~~~~~p~-~~v~W~k~~~~~~~~~-~~~~~~~~~~~L~i~---~~~~~d---~G~Y~C~a~n~~  647 (813)
                      .++.++|.|.+.+-+|. ..|+|+|||.+ .... ........+|+..+.   .+...|   .-.|+|.+.+..
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            45668999999655664 67999999975 2111 011112225653221   344444   668999999864

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA03093 EEV glycoprotein; Provisional

Probab=95.73  E-value=0.013  Score=51.83  Aligned_cols=51  Identities=33%  Similarity=0.562  Sum_probs=40.5

Q ss_pred             cCCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHh
Q psy14896         26 ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL   81 (813)
Q Consensus        26 ~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~   81 (813)
                      ...|.-  ..|+++||.|..++ ++|+||...|...|+.|-+ .+.. ..+|..++
T Consensus        98 ~~~C~G--I~~~~~C~~~~~ep-kTf~dA~~~C~~~g~~LPs-~~l~-~~WL~dYL  148 (185)
T PHA03093         98 KESCKG--IVYDGSCYIFHSEP-KTFSDAKADCAKKSSTLPN-SNLM-TTWLSDYL  148 (185)
T ss_pred             cCcCCC--eecCCEeEEecCCC-cCHHHHHHHHHhcCCcCCC-cchH-HHHHHHHh
Confidence            445753  26789999999997 9999999999999999999 3322 23887776

>KOG4597|consensus

Probab=95.68  E-value=0.021  Score=58.29  Aligned_cols=82  Identities=18%  Similarity=0.073  Sum_probs=63.5

Q ss_pred             CCCCcCCCCCCeEEEEEEecCCCCCeEEEEe---CCccc--CCCceee----ecceEEEECCCCCCCCEEEEEEEEcCCC
Q psy14896        678 KTFPEAPKAGDKVRLECVAFGYPVPSYNWTR---RGSPL--PRNAYFE----NFNRILTIPNVKVEDQGEYICRASNDRS  748 (813)
Q Consensus       678 ~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k---~g~~l--~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G  748 (813)
                      -+....+..|+++.++|-+.|.|.+.|+|.+   |+..+  ..+..+.    .....|.|.+....|+|.|+|.|.|..|
T Consensus       202 cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g  281 (560)
T KOG4597|consen  202 CPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAG  281 (560)
T ss_pred             CcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccc
Confidence            3344667899999999999999999999976   33322  2221111    1234699999999999999999999999


Q ss_pred             ceEEEEEEEEE
Q psy14896        749 ALESSVTISIQ  759 (813)
Q Consensus       749 ~~~~~~~l~V~  759 (813)
                      ...+.+.+.+.
T Consensus       282 ~~~rdv~c~s~  292 (560)
T KOG4597|consen  282 FLRRDVPCSSV  292 (560)
T ss_pred             eeeccceeeee
Confidence            99998888875

>PHA02633 hypothetical protein; Provisional

Probab=95.50  E-value=0.046  Score=38.97  Aligned_cols=38  Identities=26%  Similarity=0.374  Sum_probs=27.4

Q ss_pred             eCCeEEEcCCccccCCeeEEEEeecCceeeEeeeeEEeee
Q psy14896        254 SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFG  293 (813)
Q Consensus       254 ~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~  293 (813)
                      .+..|.|.++ ..+|+|.|.|..+|..--. ..++.|+|.
T Consensus        16 ~~~nLwilpa-~~sDSGiYiC~~rn~t~c~-~~si~l~V~   53 (63)
T PHA02633         16 NCNNMLILNP-TQSDSGIYMCITKNETYSD-MMKFDLCIC   53 (63)
T ss_pred             ccccEEEecc-ccccCcEEEEEEcCCCeeE-EEEEEEEEe
Confidence            3557888886 7999999999999865433 334555554

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=95.23  E-value=0.034  Score=52.74  Aligned_cols=50  Identities=20%  Similarity=0.393  Sum_probs=42.7

Q ss_pred             CccEEEEccCCCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEEEEeee
Q psy14896        597 PGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV  647 (813)
Q Consensus       597 p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~  647 (813)
                      ..|.+.|..++.. .+..+.++.+...|.|.+.+...+++|.|+|..+...
T Consensus        11 iDP~y~W~GP~g~-~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   11 IDPTYLWTGPNGK-PLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             CCCceEEECCCCc-ccCCCCeEEEccCceEEeeccccccCCceEEEEEEEe
Confidence            4688999987553 3667788999999999999999999999999997755

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PHA02982 hypothetical protein; Provisional

Probab=95.18  E-value=0.14  Score=46.36  Aligned_cols=114  Identities=13%  Similarity=0.210  Sum_probs=70.9

Q ss_pred             cCCCCCCeEEEEEEec-CCCCCeEEEEeCCcccCC----------------Cc-------eeeecceEEEECCCCCCCCE
Q psy14896        682 EAPKAGDKVRLECVAF-GYPVPSYNWTRRGSPLPR----------------NA-------YFENFNRILTIPNVKVEDQG  737 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~-g~P~p~i~W~k~g~~l~~----------------~~-------~~~~~~~~L~i~~v~~~d~G  737 (813)
                      +.+..|+.|.|+|... +.--....|+++......                +.       .++...++|+|+++..+..|
T Consensus        34 v~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~G  113 (251)
T PHA02982         34 VNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLG  113 (251)
T ss_pred             hhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCC
Confidence            4567899999999853 222347899986432211                00       12345678999999999999


Q ss_pred             EEEEEEEcCCCceEE-EEEEEEEcCCcccccCCceeecCC-CeEEEEEEEcccCCceEEEEECCEe
Q psy14896        738 EYICRASNDRSALES-SVTISIQAEPNFTIPLTDKHMDNQ-ADLTWTCEAFGVPDVTYSWFRNGEL  801 (813)
Q Consensus       738 ~Y~C~a~N~~G~~~~-~~~l~V~~~P~~~~~~~~~~~~~g-~~~~l~C~~~g~p~~~v~W~k~g~~  801 (813)
                      -|+|+|....|..+. .--|.|+.--.+-      .+.++ ..-...|-+-+.-.+-..|.-+|..
T Consensus       114 CYtc~~ks~~~k~E~c~kCl~V~~~~V~~------~W~e~nNeT~V~CyVgS~~~dvp~W~V~GVv  173 (251)
T PHA02982        114 CFTCEAKDAEGKEETCEKCLEIQKEDILY------VVEEHNNETIITCFVGSKHGDVPRFIVAGIV  173 (251)
T ss_pred             ceEEEEecCCCchheeheeeeEecceEEE------EEEecCCeEEEEEEEEeccCCCccEEEeeEE
Confidence            999999987766544 6667774322221      11222 3346678774322221288877763

>PHA03042 CD47-like protein; Provisional

Probab=95.07  E-value=0.077  Score=50.47  Aligned_cols=72  Identities=14%  Similarity=0.201  Sum_probs=49.7

Q ss_pred             CCCCeEEEEEEecCC-----CCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896        685 KAGDKVRLECVAFGY-----PVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ  759 (813)
Q Consensus       685 ~~G~~v~l~C~~~g~-----P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  759 (813)
                      .-.+++.+.|.+..-     -.-.+.|..+|..+-..+..  ..++|.+..... =.|+|+|+|.+...+.+..+.|.-.
T Consensus        29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t--n~aSL~~~f~~~-l~GNYTCEv~~l~n~gk~~IeLk~~  105 (286)
T PHA03042         29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT--NTSSLKFNFSKN-LSGNYTCEAINKFNKIKNTIELQYV  105 (286)
T ss_pred             ecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC--cceEEEEecccc-CCCceeEEEeecccCccEEEEEEEE
Confidence            468899999999742     23479999999987554433  246677755443 3799999999876555555555443

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=94.95  E-value=0.036  Score=52.58  Aligned_cols=50  Identities=20%  Similarity=0.412  Sum_probs=42.7

Q ss_pred             CcceEEEeeccccccccCCccEEEccCccEEEeeeeecCCeeeEEEEeeec
Q psy14896        324 PGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV  374 (813)
Q Consensus       324 p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~  374 (813)
                      ..|.+.|..++... +....++.+..+|.|.+.+...+++|.|+|..+...
T Consensus        11 iDP~y~W~GP~g~~-l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   11 IDPTYLWTGPNGKP-LSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             CCCceEEECCCCcc-cCCCCeEEEccCceEEeeccccccCCceEEEEEEEe
Confidence            45799999775543 678889999999999999999999999999997654

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=94.76  E-value=3.6  Score=41.68  Aligned_cols=121  Identities=13%  Similarity=0.240  Sum_probs=69.6

Q ss_pred             ccccCeEEEEEee--ccCC-CcEEEeeccccccceecc----c---cCCCCCceEEe----------eCCeEEEeCCCCC
Q psy14896        480 SILNDITLSCYAG--GYPN-PSYEWFKEDYVQDRLVAN----L---IDPLSDKRFTL----------SGGNLIINDPRQV  539 (813)
Q Consensus       480 ~~g~~~~l~C~~~--g~p~-~~v~W~k~~~~~~~~~~~----~---~~~~~~~~~~~----------~~~~l~i~~~~~~  539 (813)
                      .+|..+.|.|..+  |+.. ..+.|+-.|-++..+.+.    .   ........+.+          ..++|+|.++ ..
T Consensus       277 ~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka-~I  355 (500)
T PHA02914        277 EVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKA-HI  355 (500)
T ss_pred             ccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeE-EE
Confidence            6799999999985  3433 468999988776543332    1   11112222222          2468999997 99


Q ss_pred             CCCceEEEEEEcCceeEEeecEEEEEeecccccccCCCceeccCCCc-eEEeCCCCC-CCccEEEEccCCC
Q psy14896        540 EDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGK-AMFCDPPTN-YPGVNYYWARDYF  608 (813)
Q Consensus       540 ~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~-~l~C~~~~~-~p~~~v~W~k~~~  608 (813)
                      ++.|=|.|+|....-....... |.|...--+.      -..++... ...|-+-.. ..++++.|.-+|.
T Consensus       356 ~N~GCY~~~a~~g~~~~ec~~C-l~V~d~V~f~------W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV  419 (500)
T PHA02914        356 NNAGCYEAQAFMGKFKEECRHC-FKVADHVFFK------WNTEGDNETKVACYAAQYDMQPFSILWKSNGV  419 (500)
T ss_pred             EcCCceEEEEecCcchhhhhhh-eEeccEEEEE------EEeccCceEEEEEEEEecccCCceeEEEEccE
Confidence            9999999999865322222211 1111000000      01233343 477887322 3456799998873

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=94.33  E-value=0.18  Score=40.71  Aligned_cols=71  Identities=17%  Similarity=0.247  Sum_probs=46.2

Q ss_pred             eEEEEEEecCCCCCe--EEEEeCCcccCCC---c--eeeecceEEEECCCCCCCCEEEEEEEEcCCCce-EEEEEEEEE
Q psy14896        689 KVRLECVAFGYPVPS--YNWTRRGSPLPRN---A--YFENFNRILTIPNVKVEDQGEYICRASNDRSAL-ESSVTISIQ  759 (813)
Q Consensus       689 ~v~l~C~~~g~P~p~--i~W~k~g~~l~~~---~--~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~  759 (813)
                      +++=.-...+.+...  ++|..+..+....   .  .++..+-.|.|+.++..|+|.|.-+++|.-|.. ...+++.|-
T Consensus        29 sv~WK~~l~s~~~~~~IltW~n~~~~~~~~~~n~r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF  107 (108)
T PF11465_consen   29 SVQWKMQLPSQKKFEVILTWKNDSTPSYNSSFNNRFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF  107 (108)
T ss_dssp             EEEEEEEETSSSEEE-EEEEETTEEEESSTTHHHHEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred             EEEEEEEcccCCceEEEEEEcCCCcccccccccceEeeeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence            455455555566554  6665444333221   1  345567789999999999999999999999986 456777664

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=94.30  E-value=0.13  Score=42.76  Aligned_cols=62  Identities=13%  Similarity=0.161  Sum_probs=42.2

Q ss_pred             cCCCCCCeEEEEEEecCCCC---CeEEEEeCCc-ccC-------CC-------cee------eecceEEEECCCCCCCCE
Q psy14896        682 EAPKAGDKVRLECVAFGYPV---PSYNWTRRGS-PLP-------RN-------AYF------ENFNRILTIPNVKVEDQG  737 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~---p~i~W~k~g~-~l~-------~~-------~~~------~~~~~~L~i~~v~~~d~G  737 (813)
                      ..+..|+.++|+|.++|.-.   -.+.|+|... .+.       .+       .++      ....-.|.|.+++.+|++
T Consensus         8 ~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa   87 (115)
T cd05721           8 VLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTD   87 (115)
T ss_pred             eEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCe
Confidence            45678999999999987543   4689998421 210       00       011      111236999999999999


Q ss_pred             EEEEEE
Q psy14896        738 EYICRA  743 (813)
Q Consensus       738 ~Y~C~a  743 (813)
                      .|.|..
T Consensus        88 ~Y~Ca~   93 (115)
T cd05721          88 IYFCKI   93 (115)
T ss_pred             EEEEEe
Confidence            999976

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>PF05966 Chordopox_A33R: Chordopoxvirus A33R protein; InterPro: IPR009238 This family consists of several Chordopoxvirus A33R proteins

Probab=94.19  E-value=0.022  Score=51.01  Aligned_cols=50  Identities=22%  Similarity=0.444  Sum_probs=32.1

Q ss_pred             CCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHh
Q psy14896         27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL   81 (813)
Q Consensus        27 ~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~   81 (813)
                      ..|..  ..|+++||.+-.++ ++|++|...|...|++|.+ .+ -...+|..++
T Consensus       103 ~tC~G--I~~~n~Cl~~~~~p-~T~~~A~~~C~~~g~~LPs-~~-l~~~WL~dYL  152 (190)
T PF05966_consen  103 STCDG--IVYDNKCLTLNYEP-KTFDEANSDCNNKGQTLPS-KD-LMKTWLSDYL  152 (190)
T ss_dssp             S--SS--EEETTEEEEEEEEE-EEHHHHHHHHHHTT-B----HH-HTTSTTHHHH
T ss_pred             CcCCC--cccCCEEEEecCCC-CCHHHHHHHHHhcCCcCCC-cc-hHHHHHHHHh
Confidence            34543  45688999999886 8999999999999999998 11 1223555554

A33R plays a role in promoting Ab-resistant cell-to-cell spread of virus [] and interacts with A36R to incorporate the protein into the outer membrane of intracellular enveloped virions (IEV) [].; PDB: 3K7B_A.

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=94.18  E-value=0.075  Score=45.21  Aligned_cols=80  Identities=13%  Similarity=0.290  Sum_probs=41.6

Q ss_pred             ccEEEEeeecc-----CCCCeEEEeeccccccccccccc----ccCCCccE-EeeCC--eEEEcCCccccCCeeEEEEee
Q psy14896        210 NDITLSCYAGG-----YPNPSYEWFKEDYVQDRLVANLI----DPLSDKRF-TLSGG--NLIINDPRQVEDRGSYHCKAS  277 (813)
Q Consensus       210 ~~v~l~C~~~g-----~P~p~v~W~k~g~~l~~~~~~~~----~~~~~~~~-~~~~~--~l~i~~~~~~~d~G~Y~C~a~  277 (813)
                      ++|.|.|.+..     .+...|+|.++|..+-...+..-    +...+.++ .+..|  +|.+...  ..-.|.|+|.|.
T Consensus        28 ~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~--~a~~GnYTCeVt  105 (130)
T PF08204_consen   28 DTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKS--DAVEGNYTCEVT  105 (130)
T ss_dssp             SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHH--HHH-EEEEEEEE
T ss_pred             CCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcch--hccccceEEEEE
Confidence            77999999964     23446999999986522111000    00001111 01122  3655542  333999999999


Q ss_pred             cCceeeEeeeeEEee
Q psy14896        278 NKFGSIISESVQLAF  292 (813)
Q Consensus       278 n~~g~~~s~~~~l~v  292 (813)
                      ....+. ...+.|..
T Consensus       106 ~~~~eg-e~~i~Lk~  119 (130)
T PF08204_consen  106 ELSREG-ETTIELKY  119 (130)
T ss_dssp             ETTEEE-EEEEEEEE
T ss_pred             ecCCCc-eEEEEEEE
Confidence            766655 55666665

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=94.11  E-value=0.3  Score=40.61  Aligned_cols=66  Identities=15%  Similarity=0.109  Sum_probs=37.1

Q ss_pred             ccEEEEeeeccCC--C-CeEEEeeccccccccccc-----ccccCCCccEEee----CC--eEEEcCCccccCCeeEEEE
Q psy14896        210 NDITLSCYAGGYP--N-PSYEWFKEDYVQDRLVAN-----LIDPLSDKRFTLS----GG--NLIINDPRQVEDRGSYHCK  275 (813)
Q Consensus       210 ~~v~l~C~~~g~P--~-p~v~W~k~g~~l~~~~~~-----~~~~~~~~~~~~~----~~--~l~i~~~~~~~d~G~Y~C~  275 (813)
                      +.++|.|+++|.-  . -.+.|+|.-.-..+-...     ........+++.+    +.  +|.+.+. +.+|++.|.|.
T Consensus        14 ~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L-~a~DTa~Y~Ca   92 (115)
T cd05721          14 GAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNL-RANQTDIYFCK   92 (115)
T ss_pred             CCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCC-CHHHCeEEEEE
Confidence            5599999997743  3 468999864221010000     0111122332221    22  3666675 89999999997


Q ss_pred             e
Q psy14896        276 A  276 (813)
Q Consensus       276 a  276 (813)
                      .
T Consensus        93 ~   93 (115)
T cd05721          93 I   93 (115)
T ss_pred             e
Confidence            5

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>PHA02982 hypothetical protein; Provisional

Probab=94.06  E-value=0.27  Score=44.69  Aligned_cols=118  Identities=8%  Similarity=0.020  Sum_probs=70.5

Q ss_pred             eeccCCCceEEeCCCCCCCccEEEEccCCCC-Cc--------c--------cCCCeEEEee---CccEEEEeecccCCee
Q psy14896        579 IGNQNWGKAMFCDPPTNYPGVNYYWARDYFP-NF--------V--------EEDKRVFVSY---DGALYFSALEQIDAGN  638 (813)
Q Consensus       579 ~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~-~~--------~--------~~~~~~~~~~---~~~L~i~~~~~~d~G~  638 (813)
                      ....++.+.|.|..+.+..-....|++++.- +.        +        +....+.++-   .++|+|+++..+..|-
T Consensus        35 ~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~GC  114 (251)
T PHA02982         35 NATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLGC  114 (251)
T ss_pred             hccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCCc
Confidence            4456888999999877777788999986421 00        0        0012223332   2369999999999999


Q ss_pred             EEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCC-CeEEEEEEecCCCCCeEEEEeCCcc
Q psy14896        639 YSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAG-DKVRLECVAFGYPVPSYNWTRRGSP  712 (813)
Q Consensus       639 Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G-~~v~l~C~~~g~P~p~i~W~k~g~~  712 (813)
                      |+|+|....+....  ..--|.|+..-...              ...++ ....+.|-+-+.-.+-..|.-+|..
T Consensus       115 Ytc~~ks~~~k~E~--c~kCl~V~~~~V~~--------------~W~e~nNeT~V~CyVgS~~~dvp~W~V~GVv  173 (251)
T PHA02982        115 FTCEAKDAEGKEET--CEKCLEIQKEDILY--------------VVEEHNNETIITCFVGSKHGDVPRFIVAGIV  173 (251)
T ss_pred             eEEEEecCCCchhe--eheeeeEecceEEE--------------EEEecCCeEEEEEEEEeccCCCccEEEeeEE
Confidence            99999876654332  12234442211110              11123 3457889886544443489877763

>PHA03282 envelope glycoprotein E; Provisional

Probab=93.33  E-value=2.6  Score=43.72  Aligned_cols=48  Identities=23%  Similarity=0.289  Sum_probs=33.0

Q ss_pred             CceEEeeCCeEEEeCCCCCCCCceEEEEEEcCceeE-EeecEEEEEeecc
Q psy14896        521 DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI-ISESVQLAFGFIG  569 (813)
Q Consensus       521 ~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~-~s~~~~l~v~~~p  569 (813)
                      ..+....+++|.|.++ +.+|+|.|+..+....... ....+.|.|...+
T Consensus       116 ~~rvs~~n~tl~l~~a-~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~p~~  164 (540)
T PHA03282        116 PPRVAVVNGTLVLREA-RETDSGMYVLSVSRAPNSTAARAVVFLVVGPRP  164 (540)
T ss_pred             CcceeEecceEEEeec-cccCCceEEEEecCCCCchhheEEEEEEecCCC
Confidence            4566777899999997 9999999999875432222 2233566665543

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=92.57  E-value=0.6  Score=36.33  Aligned_cols=52  Identities=23%  Similarity=0.394  Sum_probs=35.5

Q ss_pred             CCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEE-EcCCCceEEEEEEEE
Q psy14896        701 VPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRA-SNDRSALESSVTISI  758 (813)
Q Consensus       701 ~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a-~N~~G~~~~~~~l~V  758 (813)
                      .+.+.|+-.+..+..      ....+.......+|+|...|.| .|+.-.....+.|.|
T Consensus        26 ~~~~~l~~~~~k~~~------~~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v   78 (80)
T PF05790_consen   26 KPSLFLENPGKKSLE------TKKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV   78 (80)
T ss_dssp             CEEEEEECSSCEEEE------ESSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred             ChhheeeccCccccc------cceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence            467888766554422      2456777888999999999999 665544555555554

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>KOG4597|consensus

Probab=91.93  E-value=0.34  Score=49.92  Aligned_cols=92  Identities=14%  Similarity=0.086  Sum_probs=61.6

Q ss_pred             CceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeec---ccccccccccccccCCCccEEeeCCeEEEcCCccc
Q psy14896        190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKE---DYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQV  266 (813)
Q Consensus       190 P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~---g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  266 (813)
                      |.+...|....+..+     ++..++|-+.|.|.+.|.|.+-   ++.+.    ..-+...+.....+...|.|-+. ..
T Consensus       197 c~l~~cpa~w~vg~w-----etcS~tCg~~G~q~r~V~c~qv~anr~~vv----~~~nq~~e~p~vtstcql~ic~e-wq  266 (560)
T KOG4597|consen  197 CALVDCPAEWFVGDW-----ETCSSTCGVQGRQYRVVTCEQVFANRENVV----MRPNQTVENPVVTSTCQLVICNE-WQ  266 (560)
T ss_pred             cccccCcchhhcccc-----hhhcccccccCCcCceeeeehhhcccccee----ecCccccCCcceeeeeeEEEcch-hh
Confidence            455555666665555     7799999999999999999764   22210    01111122222334566888886 89


Q ss_pred             cCCeeEEEEeecCceeeEeeeeEEee
Q psy14896        267 EDRGSYHCKASNKFGSIISESVQLAF  292 (813)
Q Consensus       267 ~d~G~Y~C~a~n~~g~~~s~~~~l~v  292 (813)
                      .|+|.|+|.|.|..|-. ...+.+.+
T Consensus       267 ~~a~w~tCs~rcg~g~~-~rdv~c~s  291 (560)
T KOG4597|consen  267 ADAGWYTCSARCGAGFL-RRDVPCSS  291 (560)
T ss_pred             cCCCceeecccccccee-eccceeee
Confidence            99999999999999876 44555554

>PHA03042 CD47-like protein; Provisional

Probab=91.47  E-value=0.64  Score=44.49  Aligned_cols=67  Identities=24%  Similarity=0.403  Sum_probs=41.8

Q ss_pred             ccEEEEeeeccC-----CCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeE
Q psy14896        210 NDITLSCYAGGY-----PNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSII  284 (813)
Q Consensus       210 ~~v~l~C~~~g~-----P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~  284 (813)
                      +++.+.|.++.-     -...++|..||..+-.         .+..   ...+|....  ..+-.|.|+|+|.+...+. 
T Consensus        32 ~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~---------~n~t---n~aSL~~~f--~~~l~GNYTCEv~~l~n~g-   96 (286)
T PHA03042         32 KTIVIVCNLNLLIYYNISNIHINWKFNNKVIFK---------KNNT---NTSSLKFNF--SKNLSGNYTCEAINKFNKI-   96 (286)
T ss_pred             ceEEEEeecCChhhcCccceEEEEEeCCeeEEE---------ecCC---cceEEEEec--cccCCCceeEEEeecccCc-
Confidence            669999999751     2457999999976521         1111   012344443  4566999999999765543 


Q ss_pred             eeeeEEe
Q psy14896        285 SESVQLA  291 (813)
Q Consensus       285 s~~~~l~  291 (813)
                      ...+.|+
T Consensus        97 k~~IeLk  103 (286)
T PHA03042         97 KNTIELQ  103 (286)
T ss_pred             cEEEEEE
Confidence            3445554

>cd03519 Link_domain_HAPLN_module_2 Link_domain_HAPLN_module_2; this link domain is found in the second link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein

Probab=91.22  E-value=0.14  Score=40.05  Aligned_cols=23  Identities=22%  Similarity=0.284  Sum_probs=21.0

Q ss_pred             cCCHHHHHhHcccCCCeEeeeCC
Q psy14896         48 LKTRNDAKLNCKSLDSDLANVND   70 (813)
Q Consensus        48 ~~~~~~a~~~C~~~~~~L~~i~~   70 (813)
                      +.||+||++.|+..||+||+..-
T Consensus        10 ~l~f~eA~~aC~~~ga~lAs~~Q   32 (91)
T cd03519          10 KLTFSEAVAACQRDGAQIAKVGQ   32 (91)
T ss_pred             ccCHHHHHHHHHHcCCEeCCHHH
Confidence            69999999999999999998754

The link domain is a HA-binding domain. HAPLNs contain two contiguous link modules. Both link modules of cartilage link protein are involved in interaction with HA. In cartilage, a chondroitin sulfate proteoglycan core protein (CSPG) aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggregates with other CSPGs substituting for aggregan may contribute to the structural integrity of many different tissues. Members of the vertebrate HAPLN gene family are physically linked adjacent to CSPG genes.

>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []

Probab=91.15  E-value=3.5  Score=38.54  Aligned_cols=130  Identities=14%  Similarity=0.270  Sum_probs=61.6

Q ss_pred             eEEEeecccccccccccccccCCCccEEeeCC------eEEEcCCccccCCeeEEEEeecCceee----EeeeeEEeeee
Q psy14896        225 SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGG------NLIINDPRQVEDRGSYHCKASNKFGSI----ISESVQLAFGF  294 (813)
Q Consensus       225 ~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~~d~G~Y~C~a~n~~g~~----~s~~~~l~v~~  294 (813)
                      .++||.||.++....      ..+......+|      +|.+......+-.-..+|++.=..+..    .+.++.-.|..
T Consensus         8 ~~~Wf~dg~~v~~~~------~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~   81 (211)
T PF02124_consen    8 RFRWFEDGNPVEPRF------IRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYP   81 (211)
T ss_pred             EEEEEECCEeCCccc------eeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceec
Confidence            789999998664211      11111112234      344432223344557999987322221    12222223333


Q ss_pred             ecccccCCCCceeecCCCeEEEecCCCCCC--cceEEEeeccccccccCCccEEEc-----cCccEEEeeeeec--CCe-
Q psy14896        295 IGEFNLKRAPEIGNQNWGKAMFCDPPTNYP--GVNYYWARDYFPNFVEEDKRVFVS-----YDGALYFSALEQI--DAG-  364 (813)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p--~~~v~W~k~~~~~~~~~~~~~~~~-----~~~~L~i~~v~~~--D~G-  364 (813)
                      +|.+.+.       . .+-...|.+ .-.|  ...+.|.-++...  .........     ..|...|.+..+.  ..| 
T Consensus        82 ~P~vsv~-------F-~~g~AVC~A-~CVP~~~v~l~W~v~d~~~--~~~~~~~~~g~C~~~pglvnirs~~pls~~~~~  150 (211)
T PF02124_consen   82 KPRVSVR-------F-EDGYAVCTA-RCVPRGNVTLRWSVGDDPS--PAPAATEITGVCAEHPGLVNIRSRRPLSDEDGP  150 (211)
T ss_pred             CCEEEEE-------e-cCCEEEEEc-ceeeCCCeEEEEEECCccC--CCCCceeecCcccCCcceeEeecccCCCccCCc
Confidence            3333322       2 222334553 2223  2799999887653  222222222     2345666665533  235 


Q ss_pred             -eeEEEEe
Q psy14896        365 -NYSCNVQ  371 (813)
Q Consensus       365 -~Y~C~a~  371 (813)
                       +|+|.+.
T Consensus       151 ~~YtC~l~  158 (211)
T PF02124_consen  151 VEYTCRLI  158 (211)
T ss_pred             eeEEEEEe
Confidence             9999986

EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=90.67  E-value=0.73  Score=37.33  Aligned_cols=44  Identities=25%  Similarity=0.499  Sum_probs=32.6

Q ss_pred             CccEEee--CCeEEEcCCccccCCeeEEEEeecCceeeEeeeeEEee
Q psy14896        248 DKRFTLS--GGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAF  292 (813)
Q Consensus       248 ~~~~~~~--~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v  292 (813)
                      ..++.+.  +-+|+|..+ +..|+|.|.-++++..|.+......+.|
T Consensus        61 n~r~~F~~enlaLlIkaA-q~qDSG~Y~LEvT~~sG~V~~~~FqVsV  106 (108)
T PF11465_consen   61 NNRFNFTSENLALLIKAA-QPQDSGLYCLEVTNESGKVCTKNFQVSV  106 (108)
T ss_dssp             HHHEEEETTTTEEEESS--SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred             cceEeeeccCceEEEeec-CcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence            4566665  667888775 9999999999999999998655555544

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=90.66  E-value=1.9  Score=33.58  Aligned_cols=33  Identities=24%  Similarity=0.438  Sum_probs=20.1

Q ss_pred             EEEcCCccccCCeeEEEEee-cCceeeEeeeeEEee
Q psy14896        258 LIINDPRQVEDRGSYHCKAS-NKFGSIISESVQLAF  292 (813)
Q Consensus       258 l~i~~~~~~~d~G~Y~C~a~-n~~g~~~s~~~~l~v  292 (813)
                      +.+... ..+|+|.+.|.|+ +..-.. ...+.|.|
T Consensus        45 ~~~~~~-~~~d~G~w~C~a~~~~~k~~-~s~~~i~v   78 (80)
T PF05790_consen   45 VSTFTP-TTEDSGTWVCTASDNEPKER-ESKIEILV   78 (80)
T ss_dssp             EEEESB-TCGGSEEEEEEEEECTTEEE-EEEEEEEE
T ss_pred             EEEecC-CCCCCEEEEEEEcCCceEEE-EEEEEEEc
Confidence            344443 6899999999994 443332 33344443

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein

Probab=90.17  E-value=0.5  Score=50.39  Aligned_cols=86  Identities=15%  Similarity=0.136  Sum_probs=12.6

Q ss_pred             CccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCcccccccCC--CCCC----------CCCcCCCCCCcE
Q psy14896        350 DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPN--NFPK----------TFPEAPKAGDKV  417 (813)
Q Consensus       350 ~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~--~~~~----------~~~~~v~~g~~~  417 (813)
                      ++.|.|.+++.+|+|.|+-...+..+.....  .+.|.|..+........|.  ..+.          .......+|+++
T Consensus        88 ~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~--~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf  165 (439)
T PF02480_consen   88 KGGLSILNATEQDSGVYTLYVRNDSGWAHQS--VVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTF  165 (439)
T ss_dssp             ------------------------------------------------------------SEEEEEE--SEEE--TT--E
T ss_pred             CCceEEeccccccCeeEEEEecCCCCceEEE--EEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcE
Confidence            4679999999999999999998766543332  2666666543331122221  1111          111125889998


Q ss_pred             EEEEEEeec--C-C---CeeeEeecC
Q psy14896        418 RLECVAFGY--P-V---PSYNWTRRG  437 (813)
Q Consensus       418 ~l~C~~~g~--p-~---p~i~W~~~~  437 (813)
                      .|.-.+...  . .   .+|.|+.-.
T Consensus       166 ~~~v~l~~~~~d~~~f~~~i~W~~~~  191 (439)
T PF02480_consen  166 HLSVHLQSEAHDDPPFSLEIDWYYMP  191 (439)
T ss_dssp             E---EEEEEESSS--EEEEEEEEEE-
T ss_pred             EEeEEEEeccCCCCCeeEEEEEEEec
Confidence            888777432  2 1   278898754

gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.

>KOG1026|consensus

Probab=89.42  E-value=0.93  Score=50.92  Aligned_cols=148  Identities=19%  Similarity=0.184  Sum_probs=84.2

Q ss_pred             cccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeeee
Q psy14896        209 LNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESV  288 (813)
Q Consensus       209 g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~  288 (813)
                      |..+++.|.+.+.|.|.+.|+.++-...+.        ...+..-.+-..++.+         ++|.+.|..|.. -..+
T Consensus       207 ~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~--------~~~~~~c~~~~~~~~~---------~~c~~E~~~~~~-~~~v  268 (774)
T KOG1026|consen  207 GSSITLKCSQAGIPVPCHYWFPNCLASSNT--------NQTSSLCRSECEVLEN---------DLCIAENAVARS-NPSI  268 (774)
T ss_pred             cchheeeeecccCCCcceeeecccccccCC--------Ccccccccccceeeec---------hhhHHHHhhhhc-Ccee
Confidence            366999999999999999999998543211        0000000011111111         999999998875 3344


Q ss_pred             EEeeeeecccccCCCCceeecCCCeEEEecC--CCCCCcceEEEeeccccccccCCccEEEccC-ccEEEeeeeecCCee
Q psy14896        289 QLAFGFIGEFNLKRAPEIGNQNWGKAMFCDP--PTNYPGVNYYWARDYFPNFVEEDKRVFVSYD-GALYFSALEQIDAGN  365 (813)
Q Consensus       289 ~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~--~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~-~~L~i~~v~~~D~G~  365 (813)
                      .+.+..+........+...      .-.|..  ..++|.+...|..++..+............. +-+....-+..+.|.
T Consensus       269 ~~~~~~p~~~~~~~~~~~~------~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~~~C~~~~~~~h~~~~~  342 (774)
T KOG1026|consen  269 LLVVDLPKAEVLLCSPLSD------HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGKEQCLPWNDPPHSHNGN  342 (774)
T ss_pred             eeEEecccccccCCCCccc------cCceeeeeccCCCCCceeeeecCccceEecccccccccCcCCcccCcCcccccCc
Confidence            5554443221111111100      222332  2467889999999987644433333333332 334444446778899


Q ss_pred             eEEEEeeeccccCCC
Q psy14896        366 YSCNVQSKVSDTGRN  380 (813)
Q Consensus       366 Y~C~a~n~~g~~~~~  380 (813)
                      |+|.+.+..|.....
T Consensus       343 ~~~~~e~~~g~~~~r  357 (774)
T KOG1026|consen  343 YTLFPELPGGKNYCR  357 (774)
T ss_pred             ceeeecccCcccccc
Confidence            999999998765443

>KOG1026|consensus

Probab=88.38  E-value=0.62  Score=52.23  Aligned_cols=115  Identities=15%  Similarity=0.154  Sum_probs=73.4

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcC
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAE  761 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~  761 (813)
                      ..+..|..+++.|.+.+.|.|.+.|+.++............-..+.....+      ++|.++|..|....++.+.+..|
T Consensus       202 ~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~------~~c~~E~~~~~~~~~v~~~~~~p  275 (774)
T KOG1026|consen  202 LTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCRSECEVLEN------DLCIAENAVARSNPSILLVVDLP  275 (774)
T ss_pred             hhhcccchheeeeecccCCCcceeeecccccccCCCcccccccccceeeec------hhhHHHHhhhhcCceeeeEEecc
Confidence            457889999999999999999999998876554433211111111111111      99999999999999999999888


Q ss_pred             CcccccCCceeecCCCeEEEEEEEcccCCceEEEEECCEecccc
Q psy14896        762 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELGHQM  805 (813)
Q Consensus       762 P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~g~~l~~~  805 (813)
                      +..........-   ...-+.-.+.++|.+.-.|..+|..++..
T Consensus       276 ~~~~~~~~~~~~---~~~C~~~~~~~~~~~~~~~~~~~~~~~~~  316 (774)
T KOG1026|consen  276 KAEVLLCSPLSD---HHNCIPIGITANPGPALHWCYNGSGLNYR  316 (774)
T ss_pred             cccccCCCCccc---cCceeeeeccCCCCCceeeeecCccceEe
Confidence            654322111111   11111112236777888999988776543

>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs)

Probab=88.27  E-value=4.4  Score=32.46  Aligned_cols=54  Identities=19%  Similarity=0.178  Sum_probs=33.7

Q ss_pred             EEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeE
Q psy14896        212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSII  284 (813)
Q Consensus       212 v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~  284 (813)
                      ..|.+++.+. .+.+.||.||+.+...       ..       ...+.+    .....|.|+-.+....|...
T Consensus        32 ~~l~l~a~~~-~~~~~W~vdg~~~g~~-------~~-------~~~~~~----~~~~~G~h~l~vvD~~G~~~   85 (89)
T PF06832_consen   32 QPLVLKAAGG-RGPVYWFVDGEPLGTT-------QP-------GHQLFW----QPDRPGEHTLTVVDAQGRSA   85 (89)
T ss_pred             ceEEEEEeCC-CCcEEEEECCEEcccC-------CC-------CCeEEe----CCCCCeeEEEEEEcCCCCEE
Confidence            4455555443 4499999999865211       01       122322    34678999999998888753

A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.

>PHA03286 envelope glycoprotein E; Provisional

Probab=88.13  E-value=24  Score=36.91  Aligned_cols=38  Identities=16%  Similarity=0.225  Sum_probs=32.3

Q ss_pred             CCeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEEe
Q psy14896        528 GGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFG  566 (813)
Q Consensus       528 ~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~  566 (813)
                      .+.|.|.++ +..++|.|+-...|..|......+.+.|.
T Consensus       126 ~~~L~I~nA-t~qnaGiYtly~rnd~~~~~~~vflVtV~  163 (492)
T PHA03286        126 GKELTILNA-SSQNAGIYIRYSRNGTRTAVMDVLVVWVS  163 (492)
T ss_pred             CCceEEeec-cccccceEEEEEcCCCCcEEEEEEEEEEe
Confidence            357999997 99999999999999988877777777774

>PHA03283 envelope glycoprotein E; Provisional

Probab=88.09  E-value=6.5  Score=41.74  Aligned_cols=86  Identities=16%  Similarity=0.106  Sum_probs=51.7

Q ss_pred             CccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCcccccccCCCCC---CC----------CCcCCCCCCc
Q psy14896        350 DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFP---KT----------FPEAPKAGDK  416 (813)
Q Consensus       350 ~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~---~~----------~~~~v~~g~~  416 (813)
                      .+.|.|.+++.+++|.|+--..+..+  .. ...+.|+|+.++......+|...+   ..          .+....+|++
T Consensus       133 ~~~l~I~~at~~~aGVYtly~r~d~~--~~-~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDt  209 (542)
T PHA03283        133 RSVLQIQRATPNIAGVYTLHVSSDGM--MK-HSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDS  209 (542)
T ss_pred             CCeeEEEecccccCeEEEEEecCCCc--eE-EEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCc
Confidence            35799999999999999999887544  22 234667776643322221221111   11          1122578999


Q ss_pred             EEEEEEEeecC--C---CeeeEeecCC
Q psy14896        417 VRLECVAFGYP--V---PSYNWTRRGS  438 (813)
Q Consensus       417 ~~l~C~~~g~p--~---p~i~W~~~~~  438 (813)
                      +.++-......  .   .+|.|+.-.-
T Consensus       210 f~lsi~l~s~~~d~~fs~~i~Wyy~p~  236 (542)
T PHA03283        210 FDLSVHLESDIGDPSFSATIDWYYMNT  236 (542)
T ss_pred             eeEeEEEeeccCCCCceEEEEEEEecC
Confidence            98877664322  1   2789987543

>PF08391 Ly49: Ly49-like protein, N-terminal region; InterPro: IPR013600 The sequences making up this entry are annotated as, or are similar to, Ly49 receptors (e

Probab=87.98  E-value=0.21  Score=41.71  Aligned_cols=22  Identities=32%  Similarity=0.807  Sum_probs=17.8

Q ss_pred             cccccCCCchhhhccCCeEEEE
Q psy14896         22 IDELELRCPQHWVQYRDSCYRF   43 (813)
Q Consensus        22 ~~~~~~~Cp~~w~~~~~~Cy~~   43 (813)
                      ..+....||..|.+|+.+||||
T Consensus        98 ~q~~g~~~e~~W~cyg~kCYYF  119 (119)
T PF08391_consen   98 SQHTGKPCEKHWFCYGVKCYYF  119 (119)
T ss_dssp             TTSTT-EEECEEEEETTEEEEE
T ss_pred             hhcCCCCCCCceeeeCceeeeC
Confidence            3455677999999999999998

g. P20937 from SWISSPROT). These are type II transmembrane receptors expressed by mouse natural killer (NK) cells. They are classified as being activating (e.g.Ly49D and H) or inhibitory (e.g. Ly49A and G), depending on their effect on NK cell function []. They are members of the C-type lectin receptor superfamily [], and in fact in many family members this region is found immediately N-terminal to a lectin C-type domain (IPR001304 from INTERPRO). ; PDB: 1QO3_D 3C8J_D 1P4L_D 3C8K_D 3G8K_B 1JA3_B 3CAD_A 3G8L_A.

>cd03520 Link_domain_CSPGs_modules_2_4 Link_domain_CSPGs_modules_2_4; this link domain is found in the second and fourth link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan and, in the second link module of three other CSPGs: versican, neurocan, and brevican

Probab=86.87  E-value=0.42  Score=38.01  Aligned_cols=23  Identities=30%  Similarity=0.421  Sum_probs=20.8

Q ss_pred             cCCHHHHHhHcccCCCeEeeeCC
Q psy14896         48 LKTRNDAKLNCKSLDSDLANVND   70 (813)
Q Consensus        48 ~~~~~~a~~~C~~~~~~L~~i~~   70 (813)
                      +.+|++|++.|+..||+||+..-
T Consensus        10 ~l~f~eA~~aC~~~ga~lAs~~Q   32 (96)
T cd03520          10 KFTFQEARAECRSLGAVLATTGQ   32 (96)
T ss_pred             CcCHHHHHHHHHHcCCEeCCHHH
Confidence            68999999999999999998654

The link domain is a hyaluronan (HA)-binding domain. CSPGs are characterized by an N-terminal globular domain (G1 domain) containing two contiguous link modules (modules 1 and 2). Both link modules of the G1 domain of aggrecan are involved in interaction with HA. Aggrecan in addition contains a second globular domain (G2) having link modules 3 and 4 which lack HA-binding activity. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggregan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and

>PHA03281 envelope glycoprotein E; Provisional

Probab=86.81  E-value=16  Score=38.95  Aligned_cols=87  Identities=22%  Similarity=0.259  Sum_probs=51.9

Q ss_pred             cCccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCcccccccCCCCCCCC----------CcCCCCCCcEE
Q psy14896        349 YDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTF----------PEAPKAGDKVR  418 (813)
Q Consensus       349 ~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~----------~~~v~~g~~~~  418 (813)
                      ..+.|.|.+++..++|.|+--.....|....  ..+.|+|+..+. ..+..|...++..          +....+|+++.
T Consensus       296 ~~~vL~I~nAT~~naGVYtly~rg~~G~s~~--svfLVtVkg~~~-~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFs  372 (642)
T PHA03281        296 EPGVLKFEHMEAHHAGVYIWNLQGSDGENMY--ATFLVKLKGDEE-NHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFS  372 (642)
T ss_pred             cCCeeEEEecccccceeEEEEecCCCCccee--EEEEEEecCCcc-cCCCCCCccccccCceEEEeccceeEecCCCeeE
Confidence            3468999999999999999877644332111  145677765432 1122222322222          12357899998


Q ss_pred             EEEEEeec--CCC---eeeEeecCC
Q psy14896        419 LECVAFGY--PVP---SYNWTRRGS  438 (813)
Q Consensus       419 l~C~~~g~--p~p---~i~W~~~~~  438 (813)
                      |.-.....  ..+   .|.|+.-.-
T Consensus       373 l~v~L~s~ihD~pFsleI~Wyy~p~  397 (642)
T PHA03281        373 LAMHLQYKIHDAPFDLLLEWLYVPI  397 (642)
T ss_pred             EEEEEeeeccCCCceeEEEEEEecC
Confidence            88777532  222   789987543

>cd01102 Link_Domain The link domain is a hyaluronan (HA)-binding domain

Probab=84.77  E-value=0.45  Score=37.74  Aligned_cols=23  Identities=30%  Similarity=0.361  Sum_probs=20.8

Q ss_pred             cCCHHHHHhHcccCCCeEeeeCC
Q psy14896         48 LKTRNDAKLNCKSLDSDLANVND   70 (813)
Q Consensus        48 ~~~~~~a~~~C~~~~~~L~~i~~   70 (813)
                      +.++.+|++.|+..||+||+..-
T Consensus        13 ~l~f~eA~~aC~~~ga~lAs~~Q   35 (92)
T cd01102          13 KLTFAEAALACKARGAHLATPGQ   35 (92)
T ss_pred             ccCHHHHHHHHHHcCCEeCCHHH
Confidence            58999999999999999998654

It functions to mediate adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It is found in the CD44 receptor and in human TSG-6. TSG-6 is the protein product of the tumor necrosis factor-stimulated gene-6. TSG-6 has a strong anti-inflammatory effect in models of acute inflammation and autoimmune arthritis and plays an essential role in female fertility. This group also contains the link domains of the chondroitin sulfate proteoglycan core proteins (CSPG) including aggrecan, versican, neurocan, and brevican and the link domains of the vertebrate HAPLN (HA and proteoglycan binding link) protein family. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggregates in which other CSPGs substitute for aggregan might contribute to the structural integrity of many different tissues. Members of

>smart00445 LINK Link (Hyaluronan-binding)

Probab=84.00  E-value=0.52  Score=37.56  Aligned_cols=23  Identities=26%  Similarity=0.378  Sum_probs=20.8

Q ss_pred             cCCHHHHHhHcccCCCeEeeeCC
Q psy14896         48 LKTRNDAKLNCKSLDSDLANVND   70 (813)
Q Consensus        48 ~~~~~~a~~~C~~~~~~L~~i~~   70 (813)
                      +.+|+||++.|+..||+||+..-
T Consensus        14 ~l~f~eA~~aC~~~ga~lAs~~Q   36 (94)
T smart00445       14 KLTFAEAREACRAQGATLATVGQ   36 (94)
T ss_pred             ccCHHHHHHHHHHcCCEeCCHHH
Confidence            58999999999999999998754

>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs)

Probab=83.55  E-value=12  Score=29.93  Aligned_cols=56  Identities=20%  Similarity=0.169  Sum_probs=37.4

Q ss_pred             eEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEE
Q psy14896        689 KVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALES  752 (813)
Q Consensus       689 ~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~  752 (813)
                      ...|.+.+.+. .+.+.||-||..+.....    ...+.+..   ...|.|+..+....|...+
T Consensus        31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~----~~~~~~~~---~~~G~h~l~vvD~~G~~~~   86 (89)
T PF06832_consen   31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQP----GHQLFWQP---DRPGEHTLTVVDAQGRSAS   86 (89)
T ss_pred             cceEEEEEeCC-CCcEEEEECCEEcccCCC----CCeEEeCC---CCCeeEEEEEEcCCCCEEE
Confidence            34455555544 448999999999943321    23444432   5689999999999997654

A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=83.13  E-value=2.5  Score=42.71  Aligned_cols=21  Identities=14%  Similarity=0.145  Sum_probs=17.7

Q ss_pred             eEEEEEEecCCCC--CeEEEEeC
Q psy14896        689 KVRLECVAFGYPV--PSYNWTRR  709 (813)
Q Consensus       689 ~v~l~C~~~g~P~--p~i~W~k~  709 (813)
                      .++|.|.|.|+=+  ..++|.||
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            6799999999754  37899999

>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=83.00  E-value=10  Score=30.20  Aligned_cols=76  Identities=12%  Similarity=0.156  Sum_probs=39.4

Q ss_pred             ccEEEEeee-ccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeeee
Q psy14896        210 NDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESV  288 (813)
Q Consensus       210 ~~v~l~C~~-~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~  288 (813)
                      +.+.-+|.+ .|+|++.|.|.-+=.-   ..........+...+......++..  ...|.-..+|+++...... ..++
T Consensus        21 ~v~VA~CiSa~GrPpa~ItW~t~l~G---~~etq~~~~~~GT~TV~S~y~lVPs--~~~~gk~lTCvV~h~~~~~-~~~~   94 (98)
T cd05890          21 KMLVATCVSANGKPPSVVRWDTRLKG---EAEFQEIRNQNGTVTVISRYRLVPS--REAHKQKLTCIVNYRNDRF-TDSV   94 (98)
T ss_pred             eEEEEEEEcCCCcCCcEeEEEccCCC---ceeeeeeCCCCCCEEEEEEEEEeEC--HHHcCCEeEEEEEeccccc-cccE
Confidence            447788995 7999999999744210   0000011111222222222223322  5677778999998653322 3345


Q ss_pred             EEe
Q psy14896        289 QLA  291 (813)
Q Consensus       289 ~l~  291 (813)
                      .|+
T Consensus        95 ~L~   97 (98)
T cd05890          95 TLN   97 (98)
T ss_pred             Eec
Confidence            444

Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ

>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT

Probab=82.83  E-value=1.9  Score=47.09  Aligned_cols=294  Identities=14%  Similarity=0.193  Sum_probs=25.7

Q ss_pred             eEEEEEeeccCCCcEEEeeccccccceeccccCCCCCceEEeeCCeEEEeCCCCCCCCce--EEEEEE--cCceeEEeec
Q psy14896        485 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS--YHCKAS--NKFGSIISES  560 (813)
Q Consensus       485 ~~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~--Y~C~a~--n~~g~~~s~~  560 (813)
                      +.|.|..  .-...+.|.....+....     ......  ......|.|... .+ ..|.  |...++  +..+......
T Consensus         3 ~~~~C~~--~~~~~y~W~~~~~~~~~~-----~~~~~~--~~~~~~l~ip~~-~L-~~G~y~~~~~Vt~~~~~~~~~~~~   71 (440)
T PF02010_consen    3 VSLNCND--ASTVTYNWTVFSGPSNSI-----VQDMDN--SSNTPQLTIPPY-TL-PPGDYTFTLTVTASSNPGLSSTDS   71 (440)
T ss_dssp             ---------------BEEEEES-TT-E-----EESTTT----SSSECEEECE-S---SCEEEEEEEEE--BCTTEEEEEE
T ss_pred             ccccccc--ccceEEEEEEEecCCcCc-----cccccc--cCCceEEEeCcc-cC-CCCCEEEEEEEEEECCCCceEEEE
Confidence            5667832  234678897754221000     000000  122356777763 33 3454  556666  4444444556


Q ss_pred             EEEEEeecccccccCC--CceeccCCCceEEeCCCCCCC-------ccEEEEccCCCCCc-----ccCCCeEEEeeCccE
Q psy14896        561 VQLAFGFIGEFNLKRA--PEIGNQNWGKAMFCDPPTNYP-------GVNYYWARDYFPNF-----VEEDKRVFVSYDGAL  626 (813)
Q Consensus       561 ~~l~v~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~~p-------~~~v~W~k~~~~~~-----~~~~~~~~~~~~~~L  626 (813)
                      +.|.|...|.......  ......+..+.|.... ..+|       ...+.|.-......     ............+.|
T Consensus        72 ~~v~V~~s~l~~~I~gG~~~~~~~~~~i~ldgs~-S~Dpd~~~~~~~l~y~W~C~~~~~~~~C~~~~~~~~~~~~~~~~l  150 (440)
T PF02010_consen   72 VTVTVEPSPLVAVIKGGSSRTVGYNSDITLDGSQ-SYDPDGPPGDSGLTYSWSCTDLSSNSACSTPSTNITLLNSSSSSL  150 (440)
T ss_dssp             EEEEEE--------------------------------------------------------------------------
T ss_pred             EEEEEeeccceeEEcCCccceeecCceEEEeeEE-EecccccccCCceEEEEEEeCCceeccccccccccccCCCCCEEE
Confidence            6777766553322211  1222223456666543 2233       35788876543211     000011112233457


Q ss_pred             EEEeec--ccCCeeEEEEEEeeecCccccCceeeEEEccCC-CccccccCCCCCCCCCcCCCCCCeEEEEEEecCCC---
Q psy14896        627 YFSALE--QIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHS-NFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYP---  700 (813)
Q Consensus       627 ~i~~~~--~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p-~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P---  700 (813)
                      .|..-.  ......++.++....+....  ....+.+...+ ....+..+    ......+..++.+.|...+.+.+   
T Consensus       151 ~i~~~~l~~~~~y~f~ltv~k~~r~s~s--~~~~v~v~~~~~p~v~I~~~----~n~~~~vn~~~~l~L~~~~~~~~~~~  224 (440)
T PF02010_consen  151 TIPASTLSPGSTYTFTLTVSKGSRSSSS--ASQTVTVVSGDPPTVSISCV----SNCKGKVNPSERLVLQASCSSCDSDS  224 (440)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEhHHcCCCceEEEEEEEEeCCCCcee--eEEEEEeccCCCCceeEccc----cccccccCCCCCEEEEEEEeCCCCcC
Confidence            775333  33333444444443331222  22333333221 11111111    11112367788887776666432   


Q ss_pred             -CCeEEEEe--------CCcccCCC--c-eeeecceEEEECCCCCCCCEEEEE--EEEcCCCce-EEEEEEEEEcCCcc-
Q psy14896        701 -VPSYNWTR--------RGSPLPRN--A-YFENFNRILTIPNVKVEDQGEYIC--RASNDRSAL-ESSVTISIQAEPNF-  764 (813)
Q Consensus       701 -~p~i~W~k--------~g~~l~~~--~-~~~~~~~~L~i~~v~~~d~G~Y~C--~a~N~~G~~-~~~~~l~V~~~P~~-  764 (813)
                       ...+.|..        ....+...  . ........|.|..-..+..+.|..  .|.+..+.. .+++.+.+..||.. 
T Consensus       225 ~~~~y~Wsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lvi~~~~l~~g~~Y~~~l~v~~~~~~~~~a~~~~~~n~pP~~g  304 (440)
T PF02010_consen  225 SNVSYSWSLFSLDGVSDSNSELPDWSSMTTTGSSSSNLVIDPGVLEPGSTYTFRLTVTDSSGSSGSASISFTVNAPPSGG  304 (440)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCEEEEEEEeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence             35799987        11122111  1 111224568887666666667765  555554443 77888888888863 


Q ss_pred             --cccCCceeecCCCeEEEEEEEcccC--CceEEEEE
Q psy14896        765 --TIPLTDKHMDNQADLTWTCEAFGVP--DVTYSWFR  797 (813)
Q Consensus       765 --~~~~~~~~~~~g~~~~l~C~~~g~p--~~~v~W~k  797 (813)
                        ...|..- ......+++.|.-..++  +-.+.++.
T Consensus       305 ~c~v~P~~G-~al~T~Ft~~c~~~~d~~~pL~Y~f~~  340 (440)
T PF02010_consen  305 SCSVSPSSG-YALETTFTITCSGWTDDDQPLTYQFYY  340 (440)
T ss_dssp             -------------------------------------
T ss_pred             ccccccccc-ccccccccccccccccccccccccccc
Confidence              3333221 33346678999764333  34677766

The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=82.47  E-value=5.4  Score=31.85  Aligned_cols=62  Identities=19%  Similarity=0.400  Sum_probs=42.3

Q ss_pred             cCCCCCCeEEEEEEecC-----CCCCeEEEEeCCcccCCCcee--eecceEEEECCCCCCCCEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFG-----YPVPSYNWTRRGSPLPRNAYF--ENFNRILTIPNVKVEDQGEYICRA  743 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g-----~P~p~i~W~k~g~~l~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~a  743 (813)
                      ..+..|++++..|.+.-     .+...|.|..|+..++.+.+.  ....+.+++.+.....+-.|.|..
T Consensus        13 pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l   81 (89)
T PF06328_consen   13 PVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVINDTVSSVTLPNLNPTGATLFCCKL   81 (89)
T ss_dssp             SEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEESTTEEEEEESS--SSEEEEEEEEE
T ss_pred             CEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeCCeEEEEEEccCCCCCceEEEEEE
Confidence            35678999999999862     245689999999977766533  333467888888777767787774

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>cd03518 Link_domain_HAPLN_module_1 Link_domain_HAPLN_module_1; this link domain is found in the first link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein

Probab=81.44  E-value=0.71  Score=36.74  Aligned_cols=23  Identities=22%  Similarity=0.355  Sum_probs=20.7

Q ss_pred             cCCHHHHHhHcccCCCeEeeeCC
Q psy14896         48 LKTRNDAKLNCKSLDSDLANVND   70 (813)
Q Consensus        48 ~~~~~~a~~~C~~~~~~L~~i~~   70 (813)
                      +.||.+|++.|+..||.||+..-
T Consensus        13 ~l~f~eA~~aC~~~ga~lAs~~Q   35 (95)
T cd03518          13 NLNFHEAQQACEEQDATLASFEQ   35 (95)
T ss_pred             ccCHHHHHHHHHHcCCeeCCHHH
Confidence            58999999999999999998654

The link domain is a HA-binding domain. HAPLNs contain two contiguous link modules. Both link modules of cartilage link protein are involved in interaction with HA. In cartilage, a chondroitin sulfate proteoglycan core protein (CSPG) aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggregates with other CSPGs substituting for aggregan may contribute to the structural integrity of many different tissues. Members of the vertebrate HAPLN gene family are physically linked adjacent to CSPG genes.

>PHA03052 Hypothetical protein; Provisional

Probab=81.37  E-value=3.7  Score=30.03  Aligned_cols=38  Identities=21%  Similarity=0.256  Sum_probs=29.9

Q ss_pred             CceeecCCCeEEEEEEEc-cc--CCceEEEEECCEeccccc
Q psy14896        769 TDKHMDNQADLTWTCEAF-GV--PDVTYSWFRNGELGHQMT  806 (813)
Q Consensus       769 ~~~~~~~g~~~~l~C~~~-g~--p~~~v~W~k~g~~l~~~~  806 (813)
                      ..+.+.-|..+++.|.+. |.  ..+.|.|.-||..+..++
T Consensus         5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e~~d   45 (69)
T PHA03052          5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYEEDD   45 (69)
T ss_pred             ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEeccc
Confidence            556788899999999996 33  356799999999994443

>PHA03283 envelope glycoprotein E; Provisional

Probab=81.32  E-value=9.3  Score=40.66  Aligned_cols=75  Identities=15%  Similarity=0.238  Sum_probs=53.9

Q ss_pred             ceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCCccc---------------------ccCCceeecCCCeEEE
Q psy14896        723 NRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFT---------------------IPLTDKHMDNQADLTW  781 (813)
Q Consensus       723 ~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~~~---------------------~~~~~~~~~~g~~~~l  781 (813)
                      .+.|.|.+++.+++|.|+--..|+.|.....+.|+|+.++.-.                     .+-.......|+++.+
T Consensus       133 ~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~l  212 (542)
T PHA03283        133 RSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFDL  212 (542)
T ss_pred             CCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCceeE
Confidence            5679999999999999999999988877778888998732211                     1112234568998887


Q ss_pred             EEEEcc---cC--CceEEEEE
Q psy14896        782 TCEAFG---VP--DVTYSWFR  797 (813)
Q Consensus       782 ~C~~~g---~p--~~~v~W~k  797 (813)
                      .-....   ++  ..+|.||+
T Consensus       213 si~l~s~~~d~~fs~~i~Wyy  233 (542)
T PHA03283        213 SVHLESDIGDPSFSATIDWYY  233 (542)
T ss_pred             eEEEeeccCCCCceEEEEEEE
Confidence            666543   22  35799986

>KOG0200|consensus

Probab=81.12  E-value=16  Score=41.75  Aligned_cols=123  Identities=17%  Similarity=0.191  Sum_probs=69.9

Q ss_pred             eCccEEEEeecccCCeeEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCC
Q psy14896        622 YDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPV  701 (813)
Q Consensus       622 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~  701 (813)
                      ..+.+.+..+...|.|.|+|.+.|  .  .   ..+.+.  ..+ ........  .......+..+....+   +...+.
T Consensus        11 ~~~~~~~~~~~~~~~~~y~~~~~~--~--~---~~~~~~--~~~-~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~   75 (609)
T KOG0200|consen   11 NHWFLIIDSVVPGDKGFYTCLVSN--I--N---LIISLD--DIV-IHRPILLA--GENANPNTVVTVGVPL---AFSIPQ   75 (609)
T ss_pred             ccceEEEEEEEecCCccEEEEEec--C--c---eeeEee--ccc-Cccccccc--CCCCCcceeeccccee---eeecCC
Confidence            456788999999999999999999  1  1   112222  111 11100111  1111233445555666   344446


Q ss_pred             CeEEEEeCCccc-----CCC--------------ceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896        702 PSYNWTRRGSPL-----PRN--------------AYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ  759 (813)
Q Consensus       702 p~i~W~k~g~~l-----~~~--------------~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  759 (813)
                      +.+.|.+.....     ...              .........+.+.++...+.|.|.|.+.+..+.......+.+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (609)
T KOG0200|consen   76 PFIKWGTNLEIECEDGLFEYKTKKTLSFVEIEYNRLVDGTFESGLIYNVSLTEAGEYLCWTGRTVGDGPNKAFLEVS  152 (609)
T ss_pred             CcceeeeeecccccccCcchhheeeeeeeeccccccccCceEeeeeeccChhhcceeeccCCCcccccccceEEecc
Confidence            788888765321     100              0011234468999999999999999998855555444444443

>cd03515 Link_domain_TSG_6_like This is the extracellular link domain of the type found in human TSG-6

Probab=80.66  E-value=0.7  Score=36.62  Aligned_cols=23  Identities=26%  Similarity=0.349  Sum_probs=20.6

Q ss_pred             cCCHHHHHhHcccCCCeEeeeCC
Q psy14896         48 LKTRNDAKLNCKSLDSDLANVND   70 (813)
Q Consensus        48 ~~~~~~a~~~C~~~~~~L~~i~~   70 (813)
                      +.|+.||++.|+..||.||+..-
T Consensus        13 ~l~f~eA~~aC~~~ga~lAs~~Q   35 (93)
T cd03515          13 KLTYTEAKAACEAEGAHLATYSQ   35 (93)
T ss_pred             ccCHHHHHHHHHHcCCccCCHHH
Confidence            48999999999999999998754

The link domain is a hyaluronan (HA)-binding domain. TSG-6 is the protein product of tumor necrosis factor-stimulated gene-6. TSG-6 is up-regulated in inflammatory lesions and in the ovary during ovulation. It has a strong anti-inflammatory and chondroprotective effect in models of acute inflammation and autoimmune arthritis and plays an essential role in female fertility. Also included in this group are the stabilins: stabilin-1 (FEEL-1, CLEVER-1) and stabilin-2 (FEEL-2). Stabilin-2 functions as the major liver and lymph node-scavenging receptor for HA and related glycosaminoglycans. Stabilin-2 is a scavenger receptor with a broad range of ligands including advanced glycation end (AGE) products, acetylated low density lipoprotein and procollagen peptides. In contrast, stabilin-1 does not bind HA, but binds acetylated low density lipoprotein and AGEs with lower affinity. As AGEs accum

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	813
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		5e-50
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		4e-07
3kld_A	384	Ptprg Cntn4 Complex Length = 384		6e-50
3kld_A	384	Ptprg Cntn4 Complex Length = 384		4e-07
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		1e-48
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		1e-46
3p3y_A	404	Crystal Structure Of Neurofascin Homophilic Adhesio		9e-31
3p3y_A	404	Crystal Structure Of Neurofascin Homophilic Adhesio		4e-04
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		5e-23
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		7e-17
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		7e-04
3s97_C	201	Ptprz Cntn1 Complex Length = 201		6e-23
2v5r_A	391	Structural Basis For Dscam Isoform Specificity Leng		6e-18
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		6e-16
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		6e-16
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		2e-15
2v9q_A	212	First And Second Ig Domains From Human Robo1 Length		3e-10
2v9q_A	212	First And Second Ig Domains From Human Robo1 Length		3e-10
2vra_A	208	Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20		3e-10
2vra_A	208	Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20		3e-10
2vra_A	208	Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20		4e-04
2vr9_A	217	Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21		3e-10
2vr9_A	217	Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21		3e-10
2vr9_A	217	Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21		4e-04
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		7e-10
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		8e-04
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		1e-09
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		2e-08
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		8e-07
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		5e-09
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		1e-08
3k0w_A	218	Crystal Structure Of The Tandem Ig-Like C2-Type 2 D		1e-07
3k0w_A	218	Crystal Structure Of The Tandem Ig-Like C2-Type 2 D		4e-05
3lcy_A	197	Titin Ig Tandem Domains A164-A165 Length = 197		8e-07
2wim_A	291	Crystal Structure Of Ncam2 Ig1-3 Length = 291		1e-06
2wim_A	291	Crystal Structure Of Ncam2 Ig1-3 Length = 291		2e-05
3v2a_R	772	Vegfr-2VEGF-A Complex Structure Length = 772		2e-06
3v2a_R	772	Vegfr-2VEGF-A Complex Structure Length = 772		2e-04
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		3e-06
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		4e-05
1e07_A	642	Model Of Human Carcinoembryonic Antigen By Homology		4e-06
1e07_A	642	Model Of Human Carcinoembryonic Antigen By Homology		4e-04
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		4e-06
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		4e-05
3bfo_A	91	Crystal Structure Of Ig-Like C2-Type 2 Domain Of Th		8e-06
2yd1_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		9e-05
2yd1_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		7e-04
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		9e-05
2a38_A	194	Crystal Structure Of The N-Terminus Of Titin Length		1e-04
1ya5_A	201	Crystal Structure Of The Titin Domains Z1z2 In Comp		1e-04
2yd3_A	202	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-04
2yd3_A	202	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-04
2v5t_A	189	Crystal Structure Of Ncam2 Ig2-3 Length = 189		1e-04
2yd2_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-04
2yd2_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-04
1bih_A	395	Crystal Structure Of The Insect Immune Protein Hemo		1e-04
1bih_A	395	Crystal Structure Of The Insect Immune Protein Hemo		9e-04
3pxj_A	210	Tandem Ig Repeats Of Dlar Length = 210		1e-04
2v9t_A	117	Complex Between The Second Lrr Domain Of Slit2 And		2e-04
2v9t_A	117	Complex Between The Second Lrr Domain Of Slit2 And		2e-04
3v6b_R	424	Vegfr-2VEGF-E Complex Structure Length = 424		2e-04
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		2e-04
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		2e-04
1nct_A	106	Titin Module M5, N-Terminally Extended, Nmr Length		3e-04
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		3e-04
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		3e-04
1rhf_A	182	Crystal Structure Of Human Tyro3-D1d2 Length = 182		3e-04
1tnm_A	100	Tertiary Structure Of An Immunoglobulin-Like Domain		3e-04
1nbq_A	209	Crystal Structure Of Human Junctional Adhesion Mole		4e-04
1nbq_A	209	Crystal Structure Of Human Junctional Adhesion Mole		4e-04
1ie5_A	107	Nmr Structure Of The Third Immunoglobulin Domain Fr		7e-04

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score =  196 bits (497), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 113/344 (32%), Positives = 176/344 (51%), Gaps = 19/344 (5%)
Query: 462 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 521
           GP F+++P+ V+F L        + LSC   G P P   W        +L    +D   D
Sbjct: 4   GPVFVQEPSHVMFPLDSEE--KKVKLSCEVKGNPKPHIRW--------KLNGTDVDIGMD 53
Query: 522 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIG- 580
            R+++  G+L+IN+P + +D G+Y C A+N FG+I+S   +L F ++  F  +    +  
Sbjct: 54  FRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSV 113
Query: 581 NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD-GALYFSALEQIDAGNY 639
            +  G  + C PP +   ++Y W  + +P++  +D R FVS + G LY + +E+ D GNY
Sbjct: 114 RRGQGMVLLCGPPPHSGELSYAWIFNEYPSY--QDNRRFVSQETGNLYIAKVEKSDVGNY 171
Query: 640 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQL--KFPNNFPKTFPEAPKAGDKVRLECVAF 697
           +C V + V++    GP  PL +       +   K    FP+T P   + G  V+LEC A 
Sbjct: 172 TCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPA--EKGTTVKLECFAL 229
Query: 698 GYPVPSYNWTRR-GSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI 756
           G PVP+  W R  G P+ R A     N IL IPN + ED G Y C A N R    +   +
Sbjct: 230 GNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQL 289
Query: 757 SIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
           +  A+PN+   + D H+  +  + W C+A G P  TY W +NG+
Sbjct: 290 TFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGD 333

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 59/139 (42%), Gaps = 11/139 (7%)
Query: 623 DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPE 682
           +G L     +Q DAG+Y C  ++     G+N     L  +   N+ Q+   N+      E
Sbjct: 256 NGILEIPNFQQEDAGSYECVAEN---SRGKNVAKGQLTFYAQPNWVQII--NDIHVAMEE 310
Query: 683 APKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICR 742
           +      V  EC A G P P+Y W + G PL      +     L I  V + D G Y C 
Sbjct: 311 S------VFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCV 364
Query: 743 ASNDRSALESSVTISIQAE 761
           A N    + SS  +S+ AE
Sbjct: 365 AENKHGVIFSSAELSVIAE 383

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score =  196 bits (497), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 113/344 (32%), Positives = 176/344 (51%), Gaps = 19/344 (5%)
Query: 462 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 521
           GP F+++P+ V+F L        + LSC   G P P   W        +L    +D   D
Sbjct: 5   GPVFVQEPSHVMFPLDSEE--KKVKLSCEVKGNPKPHIRW--------KLNGTDVDIGMD 54
Query: 522 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIG- 580
            R+++  G+L+IN+P + +D G+Y C A+N FG+I+S   +L F ++  F  +    +  
Sbjct: 55  FRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSV 114
Query: 581 NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD-GALYFSALEQIDAGNY 639
            +  G  + C PP +   ++Y W  + +P++  +D R FVS + G LY + +E+ D GNY
Sbjct: 115 RRGQGMVLLCGPPPHSGELSYAWIFNEYPSY--QDNRRFVSQETGNLYIAKVEKSDVGNY 172
Query: 640 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQL--KFPNNFPKTFPEAPKAGDKVRLECVAF 697
           +C V + V++    GP  PL +       +   K    FP+T P   + G  V+LEC A 
Sbjct: 173 TCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPA--EKGTTVKLECFAL 230
Query: 698 GYPVPSYNWTRR-GSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI 756
           G PVP+  W R  G P+ R A     N IL IPN + ED G Y C A N R    +   +
Sbjct: 231 GNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQL 290
Query: 757 SIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
           +  A+PN+   + D H+  +  + W C+A G P  TY W +NG+
Sbjct: 291 TFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGD 334

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 59/139 (42%), Gaps = 11/139 (7%)
Query: 623 DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPE 682
           +G L     +Q DAG+Y C  ++     G+N     L  +   N+ Q+   N+      E
Sbjct: 257 NGILEIPNFQQEDAGSYECVAEN---SRGKNVAKGQLTFYAQPNWVQII--NDIHVAMEE 311
Query: 683 APKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICR 742
           +      V  EC A G P P+Y W + G PL      +     L I  V + D G Y C 
Sbjct: 312 S------VFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCV 365
Query: 743 ASNDRSALESSVTISIQAE 761
           A N    + SS  +S+ AE
Sbjct: 366 AENKHGVIFSSAELSVIAE 384

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score =  191 bits (486), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 124/351 (35%), Positives = 170/351 (48%), Gaps = 33/351 (9%)
Query: 462 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 521
           GP F  QP  V+F   + S    + L+C A   P  +Y W K +  + +L     +P S 
Sbjct: 3   GPVFEDQPLSVLF--PEESTEEQVLLACRARASPPATYRW-KMNGTEMKL-----EPGS- 53
Query: 522 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK-RAPEIG 580
            R  L GGNL+I +P + +D G Y C ASN  G+++S    L FGF+ EF+ + R P   
Sbjct: 54  -RHQLVGGNLVIMNPTKAQDAGVYQCLASNPVGTVVSREAILRFGFLQEFSKEERDPVKA 112
Query: 581 NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVS-YDGALYFSALEQIDAGNY 639
           ++ WG  + C+PP +YPG++Y W  + FPNF+  D R FVS   G LY +     D GNY
Sbjct: 113 HEGWGVMLPCNPPAHYPGLSYRWLLNEFPNFIPTDGRHFVSQTTGNLYIARTNASDLGNY 172
Query: 640 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA----------GDK 689
           SC   S +        F    VF  S F QL       + F  + KA          G +
Sbjct: 173 SCLATSHMD-------FSTKSVF--SKFAQLNLAAEDTRLFAPSIKARFPAETYALVGQQ 223
Query: 690 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSA 749
           V LEC AFG PVP   W +    L  +  +      L IP+V  ED+G Y C A N +  
Sbjct: 224 VTLECFAFGNPVPRIKWRKVDGSL--SPQWTTAEPTLQIPSVSFEDEGTYECEAENSKGR 281
Query: 750 LESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
                 I +QA+P +   ++D   D  ++L W C A G P  T  W RNGE
Sbjct: 282 DTVQGRIIVQAQPEWLKVISDTEADIGSNLRWGCAAAGKPRPTVRWLRNGE 332

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score =  184 bits (468), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 116/351 (33%), Positives = 166/351 (47%), Gaps = 33/351 (9%)
Query: 462 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 521
           GP F +QP   +F   + S    +TL+C A   P  +Y W        ++    +    D
Sbjct: 4   GPVFEEQPAHTLF--PEGSAEEKVTLTCRARANPPATYRW--------KMNGTELKMGPD 53
Query: 522 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK-RAPEIG 580
            R+ L  G+L+I++P + +D GSY C A+N  G+++S    L FGF+ EF+ + R P   
Sbjct: 54  SRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKI 113
Query: 581 NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVS-YDGALYFSALEQIDAGNY 639
            + WG    C PP +YP ++Y W  + FPNF+  D R FVS   G LY +  E  D GNY
Sbjct: 114 TEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNY 173
Query: 640 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA----------GDK 689
           SC   S +        F    VF  S F QL       + +  + KA          G  
Sbjct: 174 SCFATSHID-------FITKSVF--SKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQM 224
Query: 690 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSA 749
           V LEC AFG PVP   W +      + + + +   +L I NV  ED+G Y C A N +  
Sbjct: 225 VTLECFAFGNPVPQIKWRKLDGS--QTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGR 282
Query: 750 LESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
                 I I A+P++   +TD   D  +DL W+C A G P     W R+G+
Sbjct: 283 DTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQ 333

>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404

Iteration: 1
 Score =  132 bits (331), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 102/348 (29%), Positives = 153/348 (43%), Gaps = 22/348 (6%)
Query: 466 IKQPTDVVFDLSKRSILN---DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
           + QP  +    +K  I++   +I + C A G P PS+ W +      R      DP    
Sbjct: 13  LTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTR----NSRFFNIAKDPRVSM 68
Query: 523 RFTLSGGNLIIN---DPRQVEDRGSYHCKASNKFGSIISESVQLAFG---FIGEFNLKRA 576
           R     G L+I+     R  E  G Y C A NKFG+ +S  ++L         + NL   
Sbjct: 69  R--RRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLD-- 124
Query: 577 PEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFS-ALEQID 635
           P +  +     + C+PP   P    +W        + +DKRV   ++G LYFS  + Q  
Sbjct: 125 PVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSM-EPITQDKRVSQGHNGDLYFSNVMLQDM 183
Query: 636 AGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA--GDKVRLE 693
             +YSCN +   + T +    F LKV       +      +P+    +     G  + LE
Sbjct: 184 QTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLE 243
Query: 694 CVAFGYPVPSYNWTRRGSPLPRN-AYFENFNRILTIPNVKVEDQGEYICRASNDRSALES 752
           C+A G P P   W ++G  LP + A FENFN+ L I NV  ED GEY C ASN   ++  
Sbjct: 244 CIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRH 303
Query: 753 SVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
           ++++ ++A P +     +  +    D    C A G P  T  W  NGE
Sbjct: 304 TISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGE 351

>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 14/147 (9%)
Query: 615 DKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPN 674
           DK  F +++ AL  + + + D+G Y C   +K+    R+     +K  P+   +      
Sbjct: 266 DKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSI-RHTISVRVKAAPYWLDE------ 318
Query: 675 NFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPL---PRNAYFENFNRILTIPNV 731
             PK    AP  G+  RL C A G P P+  W   G PL   P N   E     +   + 
Sbjct: 319 --PKNLILAP--GEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDT 374
Query: 732 KVEDQGEYICRASNDRSALESSVTISI 758
           ++  +  Y C  SN+   L ++  +S+
Sbjct: 375 QISSRAVYQCNTSNEHGYLLANAFVSV 401

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score =  106 bits (264), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 146/613 (23%), Positives = 239/613 (38%), Gaps = 110/613 (17%)
Query: 201 FDLSKRSILNDITLSCYAGGYPNPSYEWFK--EDYVQDRLVANLIDPLSDKRFTLSGGNL 258
           FD+   S  + + L C A GYP P + W+K  E   + + V      L+D+   +SG  L
Sbjct: 255 FDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVV-----LNDRVKQVSG-TL 308
Query: 259 IINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGK-AMFC 317
           II D   VED G Y C  +N  G    ESV+         + K  P     ++G+ A+F 
Sbjct: 309 IIKDA-VVEDSGKYLCVVNNSVGG---ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFT 364
Query: 318 DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQ-----S 372
              T  P     W +D          +     +  L   ++++ D G Y C V+     +
Sbjct: 365 CQYTGNPIKTVSWMKD---------GKAIGHSESVLRIESVKKEDKGMYQCFVRNDRESA 415
Query: 373 KVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYN 432
           + S   + G  F   V   + FQ+            E  + G  V L+CVA G P P  +
Sbjct: 416 EASAELKLGGRFDPPVIRQA-FQE------------ETMEPGPSVFLKCVAGGNPTPEIS 462
Query: 433 WTRRGSPLPRNAYFENFNRI---------LTIPNVKMR--GPYFIKQPTDV--------- 472
           W   G  +  N  ++    +         L I +V     G Y     + V         
Sbjct: 463 WELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKL 522
Query: 473 -------VFDLSKRSILNDITL--SCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKR 523
                  +  + K++I+   TL  +C   GYP  S  W ++         N   P++ K+
Sbjct: 523 NVYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERD---------NRALPINRKQ 573
Query: 524 FTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQN 583
                G LII +  +  D+ +Y C A N+ G     S+++    +    +  A E G   
Sbjct: 574 KVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRI-IPFAFEEGPAQ 632
Query: 584 WGK--AMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDG----ALYFSALEQIDAG 637
            G+   + C  P     +N  W  D     + ED  +  S  G     L   A+E   AG
Sbjct: 633 VGQYLTLHCSVPGGDLPLNIDWTLD--GQAISEDLGITTSRVGRRGSVLTIEAVEASHAG 690
Query: 638 NYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF 697
           N++C+ ++     G      PL V+    +  +  P +  K F +    G   ++EC A 
Sbjct: 691 NFTCHARNL---AGHQQFTTPLNVYVPPRW--ILEPTD--KAFAQ----GSDAKVECKAD 739
Query: 698 GYPVPSYNWTRRGSPLPRNAYFENFNR---------ILTIPNVKVEDQGEYICRASND-R 747
           G+P P   W +     P    +++  +          L + N++  ++G Y+C A N   
Sbjct: 740 GFPKPQVTWKKAVGDTP--GEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIG 797
Query: 748 SALESSVTISIQA 760
           S L + + IS+QA
Sbjct: 798 SGLSAVIMISVQA 810

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 86.3 bits (212), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 148/378 (39%), Gaps = 33/378 (8%)
Query: 456 PNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANL 515
           P+   +GP F+K+PT+ + D S  +      + C A G P P   W + D          
Sbjct: 32  PDADQKGPVFLKEPTNRI-DFSNST---GAEIECKASGNPMPEIIWIRSD-------GTA 80
Query: 516 IDPLSDKRFTLSGGNLI-----INDPRQVEDRGSYHCKASNKFGSIISESVQL--AFGFI 568
           +  +   R   S G L+       D RQ      Y C A N+FGSIIS  V +       
Sbjct: 81  VGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQY 140
Query: 569 GEFNLKRAPEI-GNQNWGKAMFCDPPTNYPGVNYYWARD----YFPNFVEEDKRVFVSYD 623
            E ++ +   I GN    K +      ++  V   W  D    YFP   E D +  V   
Sbjct: 141 YEADVNKEHVIRGNSAVIKCLIPSFVADFVEV-VSWHTDEEENYFPG-AEYDGKYLVLPS 198
Query: 624 GALYFSALEQIDA-GNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPE 682
           G L+   +   D   +Y C  + +++   R        V        +    +  K   +
Sbjct: 199 GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMK 258
Query: 683 APKAGDKVRLECVAFGYPVPSYNW------TRRGSPLPRNAYFENFNRILTIPNVKVEDQ 736
                  + L C A GYPVP + W      T R   +  N   +  +  L I +  VED 
Sbjct: 259 TYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDS 318
Query: 737 GEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWF 796
           G+Y+C  +N          +++ A  +  I    + +D      +TC+  G P  T SW 
Sbjct: 319 GKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWM 378
Query: 797 RNGE-LGHQMTDLLLKAV 813
           ++G+ +GH  + L +++V
Sbjct: 379 KDGKAIGHSESVLRIESV 396

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 9/110 (8%)
Query: 694 CVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESS 753
           C   G P+ + +W + G  +  +        +L I +VK ED+G Y C   NDR + E+S
Sbjct: 365 CQYTGNPIKTVSWMKDGKAIGHS------ESVLRIESVKKEDKGMYQCFVRNDRESAEAS 418
Query: 754 VTISIQAE---PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
             + +      P       ++ M+    +   C A G P    SW  +G+
Sbjct: 419 AELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGK 468

>pdb|3S97|C Chain C, Ptprz Cntn1 Complex Length = 201

Iteration: 1
 Score =  106 bits (264), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 67/199 (33%), Positives = 95/199 (47%), Gaps = 6/199 (3%)
Query: 566 GFIGEFNLKRAPEIG-NQNWGKAMFCDPPTNYPG-VNYYWARDYFPNFVEEDKRVFVS-Y 622
           G++  F  +  PE+   +  G  + CDPP ++P  ++Y W  + FP F+  DKR FVS  
Sbjct: 5   GYLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQT 64
Query: 623 DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPE 682
           +G LY + +E  D GNYSC V S          F PL   P    +   +P +    F +
Sbjct: 65  NGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTK--PYPADIVVQFKD 122
Query: 683 A-PKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYIC 741
                G  V LEC A G PVP   W +   P+P  A       +L I N+++ED+G Y C
Sbjct: 123 VYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYEC 182
Query: 742 RASNDRSALESSVTISIQA 760
            A N R   +    I +QA
Sbjct: 183 EAENIRGKDKHQARIYVQA 201

>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391

Iteration: 1
 Score = 89.7 bits (221), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 152/386 (39%), Gaps = 57/386 (14%)
Query: 461 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 520
           +GP F+K+PT+ + D S  +      + C A G P P   W + D          +  + 
Sbjct: 2   KGPVFLKEPTNRI-DFSNST---GAEIECKASGNPMPEIIWIRSD-------GTAVGDVP 50
Query: 521 DKRFTLSGGNLII-----NDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKR 575
             R   S G L+       D RQ      Y C A N+FGSIIS  V +    I  +  + 
Sbjct: 51  GLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVIQSYESEA 110
Query: 576 APEIGNQNWGKAMFCDPPT---NYPGVNYYW---ARDYFPN-FVEEDKRVFVSYDGALYF 628
             E   +     M C+ P+   ++  V+ +     R+Y+PN   E D +  V   G L+ 
Sbjct: 111 DNEYVIRGNSVVMKCEIPSYVADFVFVDLWLDSEGRNYYPNNAAETDGKYLVLPSGELHI 170
Query: 629 SALEQIDA-GNYSCNVQSKVSDTGR-------------NGPFFPLKVFPHSNFQQLKFPN 674
             +   D   +Y C  + +++   R              G   P KV P    Q +    
Sbjct: 171 REVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPVGSVRP-KVNPQDKHQFIDV-- 227
Query: 675 NFPKTFPEAPKAGDKVRLECVAFGYPVPSYNW------TRRGSPLPRNAYFENFNRILTI 728
                     +      L C+A  YP PS+ W      T R   +  N   +  +  L I
Sbjct: 228 ----------ELASSYSLLCMAQSYPTPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLII 277
Query: 729 PNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGV 788
            +  VED G+Y+C  +N          +++ A  +  I    + +D      +TC+  G 
Sbjct: 278 KDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGN 337
Query: 789 PDVTYSWFRNGE-LGHQMTDLLLKAV 813
           P  T SW ++G+ +GH  + L +++V
Sbjct: 338 PIKTVSWMKDGKAIGHSESVLRIESV 363

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score = 83.2 bits (204), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 148/382 (38%), Gaps = 52/382 (13%)
Query: 461 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 520
           +GP F+K+PT+ + D S  +      + C A G P P   W + D          +  + 
Sbjct: 2   KGPVFLKEPTNRI-DFSNST---GAEIECKASGNPMPEIIWIRSD-------GTAVGDVP 50
Query: 521 DKRFTLSGGNLII-----NDPRQVEDRGSYHCKASNKFGSIISESVQL--AFGFIGEFNL 573
             R   S G L+       D RQ      Y C A N+FGSIIS  V +        E ++
Sbjct: 51  GLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADV 110
Query: 574 KRAPEI-GNQNWGKAMFCDPPTNYPGVNYYWARD----YFPNFVEEDKRVFVSYDGALYF 628
            +   I GN    K +      ++  V   W  D    YFP   E D +  V   G L+ 
Sbjct: 111 NKEHVIRGNSAVIKCLIPSFVADFVEV-VSWHTDEEENYFPG-AEYDGKYLVLPSGELHI 168
Query: 629 SALEQIDA-GNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAG 687
             +   D   +Y C  + +++   R            +   +L        + P  P   
Sbjct: 169 REVGPEDGYKSYQCRTKHRLTGETRLS----------ATKGRLVITEPISSSAPRTPALV 218
Query: 688 DK---------VRLECVAFGYPVPSYNW------TRRGSPLPRNAYFENFNRILTIPNVK 732
            K         + L C A G+P PS+ W      T R   +  N   +  +  L I +  
Sbjct: 219 QKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAV 278
Query: 733 VEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVT 792
           VED G+Y+C  +N          +++ A  +  I    + +D      +TC+  G P  T
Sbjct: 279 VEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKT 338
Query: 793 YSWFRNGE-LGHQMTDLLLKAV 813
            SW ++G+ +GH  + L +++V
Sbjct: 339 VSWMKDGKAIGHSESVLRIESV 360

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score = 83.2 bits (204), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 148/382 (38%), Gaps = 52/382 (13%)
Query: 461 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 520
           +GP F+K+PT+ + D S  +      + C A G P P   W + D          +  + 
Sbjct: 8   KGPVFLKEPTNRI-DFSNST---GAEIECKASGNPMPEIIWIRSD-------GTAVGDVP 56
Query: 521 DKRFTLSGGNLII-----NDPRQVEDRGSYHCKASNKFGSIISESVQL--AFGFIGEFNL 573
             R   S G L+       D RQ      Y C A N+FGSIIS  V +        E ++
Sbjct: 57  GLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADV 116
Query: 574 KRAPEI-GNQNWGKAMFCDPPTNYPGVNYYWARD----YFPNFVEEDKRVFVSYDGALYF 628
            +   I GN    K +      ++  V   W  D    YFP   E D +  V   G L+ 
Sbjct: 117 NKEHVIRGNSAVIKCLIPSFVADFVEV-VSWHTDEEENYFPG-AEYDGKYLVLPSGELHI 174
Query: 629 SALEQIDA-GNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAG 687
             +   D   +Y C  + +++   R            +   +L        + P  P   
Sbjct: 175 REVGPEDGYKSYQCRTKHRLTGETRLS----------ATKGRLVITEPISSSAPRTPALV 224
Query: 688 DK---------VRLECVAFGYPVPSYNW------TRRGSPLPRNAYFENFNRILTIPNVK 732
            K         + L C A G+P PS+ W      T R   +  N   +  +  L I +  
Sbjct: 225 QKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAV 284
Query: 733 VEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVT 792
           VED G+Y+C  +N          +++ A  +  I    + +D      +TC+  G P  T
Sbjct: 285 VEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKT 344
Query: 793 YSWFRNGE-LGHQMTDLLLKAV 813
            SW ++G+ +GH  + L +++V
Sbjct: 345 VSWMKDGKAIGHSESVLRIESV 366

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 144/365 (39%), Gaps = 62/365 (16%)
Query: 464 YFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
           +F+ +P+D V   + R    ++ L+C A      P  +W K+  +       L   + D+
Sbjct: 23  HFVSEPSDAV---TMRG--GNVLLNCSAESDRGVPVIKWKKDGLI-------LALGMDDR 70
Query: 523 RFTLSGGNLIINDPRQVE----DRGSYHCKAS-NKFGSIISESVQLAFG----------- 566
           +  L  G+L+I +         D G Y C+AS    GSIIS + ++              
Sbjct: 71  KQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTES 130
Query: 567 ---FIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFP-NFVEEDKRVFVSY 622
              F+G+  L +   IG+               P    +W ++    N +  D RV V  
Sbjct: 131 ITAFMGDTVLLKCEVIGD---------------PMPTIHWQKNQQDLNPIPGDSRVVVLP 175
Query: 623 DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFP----HSNFQQLKFPNNFPK 678
            GAL  S L+  D+G Y C+ ++  S   R G    +++      H     L+ P+N   
Sbjct: 176 SGALQISRLQPGDSGVYRCSARNPAST--RTGNEAEVRILSDPGLHRQLYFLQRPSNVIA 233
Query: 679 TFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGS--PLPRNAYFENFNRILTIPNVKVEDQ 736
                   G    LEC   GYP PS+ W R      L    Y       L I NV  +D 
Sbjct: 234 I------EGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDS 287
Query: 737 GEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWF 796
           G Y C  +     + +S  +++   P F    ++ +     D+ + C   G P  T +W 
Sbjct: 288 GTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWM 347
Query: 797 RNGEL 801
           +NG++
Sbjct: 348 KNGDV 352

>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 18/185 (9%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           P  ++ P+D++    + +     TL+C A G P P+ EW+K     +R+  +  DP S  
Sbjct: 10  PRIVEHPSDLIVSKGEPA-----TLNCKAEGRPTPTIEWYKGG---ERVETDKDDPRS-H 60
Query: 250 RFTLSGGNL----IINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPE 305
           R  L  G+L    I++  +   D G Y C A N  G  +S    L    + + + ++ P 
Sbjct: 61  RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRD-DFRQNPS 119
Query: 306 IGNQNWGK--AMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDA 363
                 G+   M C PP  +P     W +D  P   ++D+R+ +   G L  +   + DA
Sbjct: 120 DVMVAVGEPAVMECQPPRGHPEPTISWKKDGSP-LDDKDERITIR-GGKLMITYTRKSDA 177
Query: 364 GNYSC 368
           G Y C
Sbjct: 178 GKYVC 182

>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 18/185 (9%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
           P  ++ P+D++    + +     TL+C A G P P+ EW+K     +R+  +  DP S  
Sbjct: 10  PRIVEHPSDLIVSKGEPA-----TLNCKAEGRPTPTIEWYKGG---ERVETDKDDPRS-H 60
Query: 523 RFTLSGGNL----IINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPE 578
           R  L  G+L    I++  +   D G Y C A N  G  +S    L    + + + ++ P 
Sbjct: 61  RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRD-DFRQNPS 119
Query: 579 IGNQNWGK--AMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDA 636
                 G+   M C PP  +P     W +D  P   ++D+R+ +   G L  +   + DA
Sbjct: 120 DVMVAVGEPAVMECQPPRGHPEPTISWKKDGSP-LDDKDERITIR-GGKLMITYTRKSDA 177
Query: 637 GNYSC 641
           G Y C
Sbjct: 178 GKYVC 182

>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 78/204 (38%), Gaps = 33/204 (16%)
Query: 188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 247
           + P  I+ PTD+V   ++ + LN     C   G P P+ EWFK+            +P+S
Sbjct: 8   QSPRIIEHPTDLVVKKNEPATLN-----CKVEGKPEPTIEWFKDG-----------EPVS 51
Query: 248 -----DKRFTLSGGNLI---INDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFN 299
                  R     G L        ++ +D G Y C A N+ G  +S    L    + + +
Sbjct: 52  TNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRD-D 110
Query: 300 LKRAPEIGNQNWGKAMF--CDPPTNYPGVNYYWARDYFP------NFVEEDKRVFVSYDG 351
            +  P+      G+     C PP   P     W +D  P             RV +   G
Sbjct: 111 FRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGG 170
Query: 352 ALYFSALEQIDAGNYSCNVQSKVS 375
            L  S +E ID GNY C  Q+ V 
Sbjct: 171 NLLISNVEPIDEGNYKCIAQNLVG 194

>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 78/204 (38%), Gaps = 33/204 (16%)
Query: 461 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 520
           + P  I+ PTD+V   ++ + LN     C   G P P+ EWFK+            +P+S
Sbjct: 8   QSPRIIEHPTDLVVKKNEPATLN-----CKVEGKPEPTIEWFKDG-----------EPVS 51
Query: 521 -----DKRFTLSGGNLI---INDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFN 572
                  R     G L        ++ +D G Y C A N+ G  +S    L    + + +
Sbjct: 52  TNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRD-D 110
Query: 573 LKRAPEIGNQNWGKAMF--CDPPTNYPGVNYYWARDYFP------NFVEEDKRVFVSYDG 624
            +  P+      G+     C PP   P     W +D  P             RV +   G
Sbjct: 111 FRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGG 170
Query: 625 ALYFSALEQIDAGNYSCNVQSKVS 648
            L  S +E ID GNY C  Q+ V 
Sbjct: 171 NLLISNVEPIDEGNYKCIAQNLVG 194

>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 70/168 (41%), Gaps = 28/168 (16%)
Query: 603 WARDYFPNFVEEDKRVFVSY-DGALYF----SALEQIDAGNYSCNVQSKVSDTGRNGPFF 657
           W +D  P    E K   V + DGAL+F       ++ D G Y C  +++V          
Sbjct: 43  WFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQA------- 95
Query: 658 PLKVFPHSNFQQLKFPNNFPKTFPEAPKA--GDKVRLECVA-FGYPVPSYNWTRRGSPLP 714
              V  H++ Q     ++F +  P+  +   G+   LEC    G P P+  W + G PL 
Sbjct: 96  ---VSRHASLQIAVLRDDF-RVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLD 151
Query: 715 --RNAYFENFNRI-------LTIPNVKVEDQGEYICRASNDRSALESS 753
             +   F   +R+       L I NV+  D+G Y C A N     ESS
Sbjct: 152 DLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESS 199

>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 78/204 (38%), Gaps = 33/204 (16%)
Query: 188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 247
           + P  I+ PTD+V   ++ + LN     C   G P P+ EWFK+            +P+S
Sbjct: 8   QSPRIIEHPTDLVVKKNEPATLN-----CKVEGKPEPTIEWFKDG-----------EPVS 51
Query: 248 -----DKRFTLSGGNLI---INDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFN 299
                  R     G L        ++ +D G Y C A N+ G  +S    L    + + +
Sbjct: 52  TNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRD-D 110
Query: 300 LKRAPEIGNQNWGKAMF--CDPPTNYPGVNYYWARDYFP------NFVEEDKRVFVSYDG 351
            +  P+      G+     C PP   P     W +D  P             RV +   G
Sbjct: 111 FRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGG 170
Query: 352 ALYFSALEQIDAGNYSCNVQSKVS 375
            L  S +E ID GNY C  Q+ V 
Sbjct: 171 NLLISNVEPIDEGNYKCIAQNLVG 194

>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 78/204 (38%), Gaps = 33/204 (16%)
Query: 461 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 520
           + P  I+ PTD+V   ++ + LN     C   G P P+ EWFK+            +P+S
Sbjct: 8   QSPRIIEHPTDLVVKKNEPATLN-----CKVEGKPEPTIEWFKDG-----------EPVS 51
Query: 521 -----DKRFTLSGGNLI---INDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFN 572
                  R     G L        ++ +D G Y C A N+ G  +S    L    + + +
Sbjct: 52  TNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRD-D 110
Query: 573 LKRAPEIGNQNWGKAMF--CDPPTNYPGVNYYWARDYFP------NFVEEDKRVFVSYDG 624
            +  P+      G+     C PP   P     W +D  P             RV +   G
Sbjct: 111 FRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGG 170
Query: 625 ALYFSALEQIDAGNYSCNVQSKVS 648
            L  S +E ID GNY C  Q+ V 
Sbjct: 171 NLLISNVEPIDEGNYKCIAQNLVG 194

>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 70/168 (41%), Gaps = 28/168 (16%)
Query: 603 WARDYFPNFVEEDKRVFVSY-DGALYF----SALEQIDAGNYSCNVQSKVSDTGRNGPFF 657
           W +D  P    E K   V + DGAL+F       ++ D G Y C  +++V          
Sbjct: 43  WFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQA------- 95
Query: 658 PLKVFPHSNFQQLKFPNNFPKTFPEAPKA--GDKVRLECVA-FGYPVPSYNWTRRGSPLP 714
              V  H++ Q     ++F +  P+  +   G+   LEC    G P P+  W + G PL 
Sbjct: 96  ---VSRHASLQIAVLRDDF-RVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLD 151
Query: 715 --RNAYFENFNRI-------LTIPNVKVEDQGEYICRASNDRSALESS 753
             +   F   +R+       L I NV+  D+G Y C A N     ESS
Sbjct: 152 DLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESS 199

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 89/233 (38%), Gaps = 28/233 (12%)
Query: 539 VEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPG 598
           ++D G Y C  + + G+    +V +       F     P+   +     + CD  ++ P 
Sbjct: 71  IDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPP 130
Query: 599 VNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFP 658
               W        +++D R  V  +  L    +++ D G Y C         GR      
Sbjct: 131 -TIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCE--------GR------ 175
Query: 659 LKVFPHSNFQQLKFPNNFPKTFPE-------APKAGDKVRLECVAFGYPVPSYNWTRRGS 711
           +      NF+ ++   N P T              G  V L C A G+P P+ +WT+ G 
Sbjct: 176 ILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGE 235
Query: 712 PLP------RNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 758
           P+           F + +  LTI NV   D+ EY+C A N     ++S+ + +
Sbjct: 236 PIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 69/173 (39%), Gaps = 17/173 (9%)
Query: 635 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC 694
           DAG Y C V ++  D  ++     +K+F    F+    P  F        K G+   + C
Sbjct: 73  DAGIYKCVVTAE--DGTQSEATVNVKIFQKLMFKNAPTPQEF--------KEGEDAVIVC 122
Query: 695 VAFGYPVPSYNWTRRGSP--LPRNAYFENF-NRILTIPNVKVEDQGEYICR----ASNDR 747
                  P+  W  +G    L ++  F    N  L I  +K  D+G Y C     A  + 
Sbjct: 123 DVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEI 182
Query: 748 SALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
           +  +  V +++         + +   +    +T  C+A G P+ T SW ++GE
Sbjct: 183 NFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGE 235

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 103/496 (20%), Positives = 170/496 (34%), Gaps = 83/496 (16%)
Query: 351 GALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEA 410
            +L  + ++  D G Y+C  ++ V     +              ++ K P +F +   + 
Sbjct: 61  ASLVINKVDHSDVGEYTCKAENSVGAVASSAVLV---------IKERKLPPSFARKLKDV 111
Query: 411 PKA-GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFEN--FNRILTIPNVKMRG----- 462
            +  G  V  EC   G      +W + G  L  +A  +    + + T+  ++        
Sbjct: 112 HETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQ 171
Query: 463 --------------------------PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPN 496
                                     P+F  +P  V   L +       T  C+  G   
Sbjct: 172 YNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESG-----TFKCHVTGTAP 226
Query: 497 PSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE-DRGSYHCKASNKFGS 555
               W K++          I P  + + TL      +   +  + D G Y C ASN  G 
Sbjct: 227 IKITWAKDN--------REIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGK 278
Query: 556 IISESVQLAFGFIGEFNLKRAP-EIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEE 614
             S S QL       F  K  P  I  Q+      C    + P +   W +D     ++E
Sbjct: 279 D-SCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGS-PEIKVLWYKD--ETEIQE 334
Query: 615 DKR---VFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLK 671
             +    FV     L    L   D+G+Y+C   +       +               ++K
Sbjct: 335 SSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSL------------KVK 382
Query: 672 FPNNFPKT-FPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRIL 726
            P  F K   P     G  V LEC   G P    +W +    L     +    ENF   +
Sbjct: 383 EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSI 442
Query: 727 TIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAF 786
            I NV   D GEY C+ASND  +     +I+++A P F   L+D       ++       
Sbjct: 443 HILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIE 502
Query: 787 GVPDVTYSWFRN-GEL 801
           G   ++ +WF++ GE+
Sbjct: 503 GAEPISVAWFKDKGEI 518

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 85/364 (23%), Positives = 135/364 (37%), Gaps = 63/364 (17%)
Query: 460 MRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 519
           M  PYFI +P + V    + +I   ITL C   G P     W+KE + + R       P 
Sbjct: 3   MEPPYFI-EPLEHV----EAAIGEPITLQCKVDGTPEIRIAWYKE-HTKLRSA-----PA 51
Query: 520 SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNL----KR 575
              +F  +  +L+IN      D G Y CKA N  G++ S +V +    I E  L     R
Sbjct: 52  YKMQFKNNVASLVINKVDH-SDVGEYTCKAENSVGAVASSAVLV----IKERKLPPSFAR 106
Query: 576 APEIGNQNWG--KAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRV---FVSYDGALYFSA 630
             +  ++  G   A  C    + P +   W +D     +++D  +   F+     L    
Sbjct: 107 KLKDVHETLGFPVAFECRINGSEP-LQVSWYKD--GELLKDDANLQTSFIHNVATLQILQ 163
Query: 631 LEQIDAGNYSCNVQSKVSDTGRNG----------PFFPLKVFPHSNFQQLKFPNNFPKTF 680
            +Q   G Y+C+  + +     +           PFF LK  P S    L          
Sbjct: 164 TDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLK--PVSVDLAL---------- 211
Query: 681 PEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLP-----RNAYFENFNRILTIPNVKVED 735
                 G+    +C   G       W +    +      +    EN    LT+  V   D
Sbjct: 212 ------GESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVEN-TATLTVLKVTKGD 264
Query: 736 QGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLT-WTCEAFGVPDVTYS 794
            G+Y C ASN       S  + +Q  P F   L    +  Q + T + C+  G P++   
Sbjct: 265 AGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVL 324
Query: 795 WFRN 798
           W+++
Sbjct: 325 WYKD 328

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 9/123 (7%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-----YFENFNRILTIPNVKVEDQGEYIC 741
           G+ + L+C   G P     W +  + L R+A      F+N    L I  V   D GEY C
Sbjct: 20  GEPITLQCKVDGTPEIRIAWYKEHTKL-RSAPAYKMQFKNNVASLVINKVDHSDVGEYTC 78
Query: 742 RASNDRSALESSVTISIQAE---PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRN 798
           +A N   A+ SS  + I+     P+F   L D H      + + C   G   +  SW+++
Sbjct: 79  KAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKD 138
Query: 799 GEL 801
           GEL
Sbjct: 139 GEL 141

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 114/313 (36%), Gaps = 39/313 (12%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
           P FIK+P D +      +     +  C A G P P   W K+    +      I+     
Sbjct: 7   PRFIKEPKDQIGVSGGVA-----SFVCQATGDPKPRVTWNKKGKKVNSQRFETIE----- 56
Query: 523 RFTLSGGNLIINDP-RQVEDRGSYHCKASNKFGSIISESV-------QLAFGFIGEFNLK 574
            F  S G ++   P R   D   Y C A N  G I   +        QL  GF    N+ 
Sbjct: 57  -FDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGF---PNID 112
Query: 575 RAPEIG--NQNWGKAMFCDPPTNYPGVNYYWARDYFP-NFVEEDKRVFVSYDGALYFSAL 631
             P++    +     M C    N P     W +D+ P +    + R+     GAL   + 
Sbjct: 113 MGPQLKVVERTRTATMLCAASGN-PDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESS 171
Query: 632 EQIDAGNYSCNVQSKVSDTGRNGPFF--PLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDK 689
           E+ D G Y C        T   G  +  P  ++        +F +  P +    P  G  
Sbjct: 172 EETDQGKYECVA------TNSAGVRYSSPANLYVRVQNVAPRF-SILPMSHEIMP--GGN 222
Query: 690 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSA 749
           V + CVA G P+P   W +    L           +L + +VK  D   Y C A +    
Sbjct: 223 VNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRNVLELTDVK--DSANYTCVAMSSLGV 280
Query: 750 LESSVTISIQAEP 762
           +E+   I++++ P
Sbjct: 281 IEAVAQITVKSLP 293

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 678 KTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF--ENFNRILTIPNVKVED 735
           K+F    + G+++   C A G P P+ +W R G  +  N  +  +  N  LT+ N+   D
Sbjct: 10  KSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSD 69
Query: 736 QGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSW 795
            G Y+CRA+N     E    + +  +P+  I L ++       +T  C+A G P    +W
Sbjct: 70  GGPYVCRATNKAGEDEKQAFLQVFVQPHI-IQLKNETTYENGQVTLVCDAEGEPIPEITW 128
Query: 796 FR 797
            R
Sbjct: 129 KR 130

>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma Translocation Protein 1 Length = 218

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 78/207 (37%), Gaps = 45/207 (21%)
Query: 589 FCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVS 648
            C   T +P V Y W +         +K +       L F+A+   DAG Y C V +  +
Sbjct: 38  LCCRATGHPFVQYQWFK--------MNKEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFT 89
Query: 649 DTGRNGPFFPLKVFPHSNFQQLK---FPNNFPKTF-------------PEAPKA--GDKV 690
                        F  S + QL     P +F ++              P + K   G  +
Sbjct: 90  -------------FEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTL 136
Query: 691 RLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSAL 750
            L+CVA G P+P Y W +   PL          ++  +P V +E QG Y C   NDR + 
Sbjct: 137 VLQCVAVGSPIPHYQWFKNELPLTHET-----KKLYMVPYVDLEHQGTYWCHVYNDRDSQ 191
Query: 751 ES-SVTISIQAEPNFTIPLTDKHMDNQ 776
           +S  V I I    N   P   +   +Q
Sbjct: 192 DSKKVEIIIDELNNLGHPDNKEQTTDQ 218

>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma Translocation Protein 1 Length = 218

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 59/146 (40%), Gaps = 22/146 (15%)
Query: 682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYIC 741
           +A  AG  V+L C A G+P   Y W +    +P     E     L    V V+D G Y+C
Sbjct: 28  KAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSE-----LIFNAVHVKDAGFYVC 82
Query: 742 RASNDRS----------------ALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEA 785
           R +N+ +                + + SV    +++    +  T + +   + L   C A
Sbjct: 83  RVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVA 142
Query: 786 FGVPDVTYSWFRNG-ELGHQMTDLLL 810
            G P   Y WF+N   L H+   L +
Sbjct: 143 VGSPIPHYQWFKNELPLTHETKKLYM 168

>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 7/124 (5%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYI 740
           K G+  +L C   G P+P   W R G  L ++  +    +     LT+   + ED+G Y 
Sbjct: 20  KLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYT 79
Query: 741 CRASNDRSALESSVTISIQAEPNF--TIPLTDKHMDN-QADLTWTCEAFGVPDVTYSWFR 797
           C A+N+   +E+S  + +QA P F    PL +K+     + L       G P    +WF 
Sbjct: 80  CIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFH 139
Query: 798 NGEL 801
             +L
Sbjct: 140 GQKL 143

>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 106/271 (39%), Gaps = 39/271 (14%)
Query: 488 SCYAGGYPNPSYEWFK---EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 544
           +C A G P  S +W+    E  +  + V    + +   R T+   N        +ED G 
Sbjct: 25  TCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRS-RLTIYNAN--------IEDAGI 74
Query: 545 YHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTN-YPGVNYYW 603
           Y C+A++  G     +V L       F    +P+   Q     + C   ++  P V++ +
Sbjct: 75  YRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLY 134
Query: 604 ARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFP 663
             +        D R  +  +  L    + + D G Y C  + +V   G            
Sbjct: 135 HNEEVTTI--SDNRFAMLANNNLQILNINKSDEGIYRC--EGRVEARG------------ 178
Query: 664 HSNFQQLKFPNNFP-------KTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRN 716
             +F+ +    N P       K+F    + G+++   C A G P P+ +W R G  +  N
Sbjct: 179 EIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEEN 238
Query: 717 AYF--ENFNRILTIPNVKVEDQGEYICRASN 745
             +  +  N  LT+ N+   D G Y+CRA+N
Sbjct: 239 EKYILKGSNTELTVRNIINSDGGPYVCRATN 269

>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 86/209 (41%), Gaps = 24/209 (11%)
Query: 616 KRVFVSYDGA-----LYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQL 670
           +RV V  +G      +Y + +E  DAG Y C        T        L+++    F+++
Sbjct: 49  QRVVVQKEGVRSRLTIYNANIE--DAGIYRCQATDAKGQT--QEATVVLEIYQKLTFREV 104
Query: 671 KFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNW---TRRGSPLPRNAYFENFNRILT 727
             P  F        K G+   + C     P P+ +W       + +  N +    N  L 
Sbjct: 105 VSPQEF--------KQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQ 156
Query: 728 IPNVKVEDQGEYICRASND-RSALE-SSVTISIQAEPNFTIPLT--DKHMDNQADLTWTC 783
           I N+   D+G Y C    + R  ++   + + +   P  ++P    +   +   ++T++C
Sbjct: 157 ILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSC 216
Query: 784 EAFGVPDVTYSWFRNGELGHQMTDLLLKA 812
            A G P+   SWFRNG+L  +    +LK 
Sbjct: 217 RASGSPEPAISWFRNGKLIEENEKYILKG 245

>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure Length = 772

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 95/483 (19%), Positives = 168/483 (34%), Gaps = 121/483 (25%)
Query: 352 ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP 411
            L    + + D G Y+C   S +  T +N  F  +   P   F       +  ++  EA 
Sbjct: 291 TLTIDGVTRSDQGLYTCAASSGLM-TKKNSTFVRVHEKPFVAF------GSGMESLVEA- 342
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----------------NFNRILTI 455
             G++VR+     GYP P   W + G PL  N   +                N+  ILT 
Sbjct: 343 TVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNYTVILTN 402
Query: 456 PNVKMRGPYFIKQPTDVVFDLSKRSILNDI---------TLSCYAGGYPNPSY-EWF--- 502
           P  K +  + +     V   + ++S+++ +         TL+C     P P +  W+   
Sbjct: 403 PISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQL 462
Query: 503 -KEDYVQDRLVANLIDPLSDKRFT----LSGGNLIINDPRQ---VEDRGS---------- 544
            +E   +     ++ +P   + +       GGN I  +  Q   +E +            
Sbjct: 463 EEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAA 522
Query: 545 -----YHCKASNKFGS---IISESVQLAFGFIGEFNLKRAPEIGNQ-------NWGKAMF 589
                Y C+A NK G    +IS            F++ R PEI  Q           +++
Sbjct: 523 NVSALYKCEAVNKVGRGERVIS------------FHVTRGPEITLQPDMQPTEQESVSLW 570
Query: 590 CDPP-TNYPGVNYY--------WARDYFPNFVEEDKRVFVSYDGALYFSALEQI------ 634
           C    + +  + +Y              P  V ++       +  ++ ++   I      
Sbjct: 571 CTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELK 630
Query: 635 -----DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFP-----EAP 684
                D G+Y C  Q + +               H   +QL        T       +  
Sbjct: 631 NASLQDQGDYVCLAQDRKTKKR------------HCVVRQLTVLERVAPTITGNLENQTT 678
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA--YFENFNRILTIPNVKVEDQGEYICR 742
             G+ + + C A G P P   W +    L  ++    ++ NR LTI  V+ ED+G Y C+
Sbjct: 679 SIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQ 738
Query: 743 ASN 745
           A +
Sbjct: 739 ACS 741

>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure Length = 772

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 65/172 (37%), Gaps = 18/172 (10%)
Query: 625 ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP 684
            L    + + D G Y+C   S +  T +N  F  +   P   F       +  ++  EA 
Sbjct: 291 TLTIDGVTRSDQGLYTCAASSGLM-TKKNSTFVRVHEKPFVAF------GSGMESLVEA- 342
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRAS 744
             G++VR+     GYP P   W + G PL  N   +    +LTI  V   D G Y    +
Sbjct: 343 TVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIK-AGHVLTIMEVSERDTGNYTVILT 401
Query: 745 NDRSALESSVTISIQ-------AEPNFTIPLTDKHMDNQADLTWTCEAFGVP 789
           N  S  + S  +S+         E +   P+          L  TC  + +P
Sbjct: 402 NPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTL--TCTVYAIP 451

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 112/310 (36%), Gaps = 37/310 (11%)
Query: 460 MRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 519
           M  P+F  +P  V   L +       T  C+  G       W K++          I P 
Sbjct: 3   MAPPFFDLKPVSVDLALGESG-----TFKCHVTGTAPIKITWAKDN--------REIRPG 49
Query: 520 SDKRFTLSGGNLIINDPRQVE-DRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAP- 577
            + + TL      +   +  + D G Y C ASN  G   S S QL       F  K  P 
Sbjct: 50  GNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKD-SCSAQLGVQAPPRFIKKLEPS 108
Query: 578 EIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKR---VFVSYDGALYFSALEQI 634
            I  Q+      C    + P +   W +D     ++E  +    FV     L    L   
Sbjct: 109 RIVKQDEHTRYECKIGGS-PEIKVLWYKD--ETEIQESSKFRMSFVESVAVLEMYNLSVE 165
Query: 635 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC 694
           D+G+Y+C   +       +     LKV     F++        K  P     G  V LEC
Sbjct: 166 DSGDYTCEAHNAAGSASSS---TSLKVKEPPVFRK--------KPHPVETLKGADVHLEC 214
Query: 695 VAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYICRASNDRSAL 750
              G P    +W +    L     +    ENF   + I NV   D GEY C+ASND  + 
Sbjct: 215 ELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSY 274
Query: 751 ESSVTISIQA 760
               +I+++A
Sbjct: 275 TCVGSITLKA 284

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 88/253 (34%), Gaps = 51/253 (20%)
Query: 560 SVQLAFGFIGEFNLK---RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDK 616
           SV LA G  G F       AP      W K    D     PG NY              K
Sbjct: 14  SVDLALGESGTFKCHVTGTAPI--KITWAK----DNREIRPGGNY--------------K 53
Query: 617 RVFVSYDGALYFSALEQIDAGNYSC---NVQSKVSDTGRNG----PFFPLKVFPHSNFQQ 669
              V     L    + + DAG Y+C   NV  K S + + G    P F  K+ P    +Q
Sbjct: 54  MTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQAPPRFIKKLEPSRIVKQ 113
Query: 670 LKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----NFNRI 725
                             +  R EC   G P     W +  + +  ++ F         +
Sbjct: 114 -----------------DEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAV 156
Query: 726 LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEA 785
           L + N+ VED G+Y C A N   +  SS ++ ++  P F            AD+   CE 
Sbjct: 157 LEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECEL 216
Query: 786 FGVPDVTYSWFRN 798
            G P    SW ++
Sbjct: 217 QGTPPFQVSWHKD 229

>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology Modelling And Curve-Fitting To Experimental Solution Scattering Data Length = 642

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 96/430 (22%), Positives = 162/430 (37%), Gaps = 65/430 (15%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGP-YFIKQPT 470
           ++G+ + L C A   P   Y+W   G+       F+   + L IPN+ +     +  Q  
Sbjct: 216 RSGENLNLSCHAASNPPAQYSWFVNGT-------FQQSTQELFIPNITVNNSGSYTCQAH 268
Query: 471 DVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDR-LVANLIDP----------L 519
           +    L++ ++    T++ YA   P P       + V+D   VA   +P          +
Sbjct: 269 NSDTGLNRTTV---TTITVYAEP-PKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWV 324
Query: 520 SDKRFTLSGGNLIINDPRQV-------EDRGSYHCKASNKFGSIISESVQLAFGFIGEFN 572
           +++   +S    + ND R +        D G Y C   N+     S+ V L   + G  +
Sbjct: 325 NNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLY-GPDD 383
Query: 573 LKRAPEIGNQNWGK--AMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSA 630
              +P       G   ++ C   +N P   Y W  D   N  +  + +F+S         
Sbjct: 384 PTISPSYTYYRPGVNLSLSCHAASN-PPAQYSWLIDG--NIQQHTQELFIS--------N 432
Query: 631 LEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKV 690
           + + ++G Y+C   +  S   R            +  + +      PK    +  +    
Sbjct: 433 ITEKNSGLYTCQANNSASGHSR------------TTVKTITVSAELPKPSISSNNSKPVE 480
Query: 691 RLECVAFGYPVPSYN----WTRRGSPLPRNAYFE--NFNRILTIPNVKVEDQGEYICRAS 744
             + VAF     + N    W   G  LP +   +  N NR LT+ NV   D   Y+C   
Sbjct: 481 DKDAVAFTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQ 540
Query: 745 NDRSALESS-VTISIQAEPNF-TIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELG 802
           N  SA  S  VT+ +   P+   I   D    + A+L  +C +   P   YSW  NG + 
Sbjct: 541 NSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRING-IP 599
Query: 803 HQMTDLLLKA 812
            Q T +L  A
Sbjct: 600 QQHTQVLFIA 609

>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology Modelling And Curve-Fitting To Experimental Solution Scattering Data Length = 642

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Query: 703 SYNWTRRGSPLPRNAYFE--NFNRILTIPNVKVEDQGEYICRASNDRSALES-SVTISIQ 759
           +Y W      LP +   +  N NR LT+ NV   D   Y C   N  SA  S SV +++ 
Sbjct: 141 TYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVL 200
Query: 760 AEPNF-TIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELGHQMTDLLLKAV 813
             P+  TI   +    +  +L  +C A   P   YSWF NG       +L +  +
Sbjct: 201 YGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQELFIPNI 255

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 112/310 (36%), Gaps = 37/310 (11%)
Query: 460 MRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 519
           M  P+F  +P  V   L +       T  C+  G       W K++          I P 
Sbjct: 3   MAPPFFDLKPVSVDLALGESG-----TFKCHVTGTAPIKITWAKDN--------REIRPG 49
Query: 520 SDKRFTLSGGNLIINDPRQVE-DRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAP- 577
            + + TL      +   +  + D G Y C ASN  G   S S QL       F  K  P 
Sbjct: 50  GNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKD-SCSAQLGVQEPPRFIKKLEPS 108
Query: 578 EIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKR---VFVSYDGALYFSALEQI 634
            I  Q+      C    + P +   W +D     ++E  +    FV     L    L   
Sbjct: 109 RIVKQDEHTRYECKIGGS-PEIKVLWYKD--ETEIQESSKFRMSFVESVAVLEMYNLSVE 165
Query: 635 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC 694
           D+G+Y+C   +       +     LKV     F++        K  P     G  V LEC
Sbjct: 166 DSGDYTCEAHNAAGSASSS---TSLKVKEPPVFRK--------KPHPVETLKGADVHLEC 214
Query: 695 VAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYICRASNDRSAL 750
              G P    +W +    L     +    ENF   + I NV   D GEY C+ASND  + 
Sbjct: 215 ELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSY 274
Query: 751 ESSVTISIQA 760
               +I+++A
Sbjct: 275 TCVGSITLKA 284

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 88/253 (34%), Gaps = 51/253 (20%)
Query: 560 SVQLAFGFIGEFNLK---RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDK 616
           SV LA G  G F       AP      W K    D     PG NY              K
Sbjct: 14  SVDLALGESGTFKCHVTGTAPI--KITWAK----DNREIRPGGNY--------------K 53
Query: 617 RVFVSYDGALYFSALEQIDAGNYSC---NVQSKVSDTGRNG----PFFPLKVFPHSNFQQ 669
              V     L    + + DAG Y+C   NV  K S + + G    P F  K+ P    +Q
Sbjct: 54  MTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQ 113
Query: 670 LKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----NFNRI 725
                             +  R EC   G P     W +  + +  ++ F         +
Sbjct: 114 -----------------DEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAV 156
Query: 726 LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEA 785
           L + N+ VED G+Y C A N   +  SS ++ ++  P F            AD+   CE 
Sbjct: 157 LEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECEL 216
Query: 786 FGVPDVTYSWFRN 798
            G P    SW ++
Sbjct: 217 QGTPPFQVSWHKD 229

>pdb|3BFO|A Chain A, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma Translocation Protein 1 Length = 91

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASND 746
           G  + L+CVA G P+P Y W +   PL          ++  +P V +E QG Y C   ND
Sbjct: 18  GSTLVLQCVAVGSPIPHYQWFKNELPLTHET-----KKLYMVPYVDLEHQGTYWCHVYND 72
Query: 747 RSALES 752
           R + +S
Sbjct: 73  RDSQDS 78

>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 16/114 (14%)
Query: 178 MDIENPDKIPRG-PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQD 236
           + I   DK P G P   + P   V ++      + + ++C A G P P+  W K     D
Sbjct: 98  LTIYEGDKTPAGFPVITQGPGTRVIEVG-----HTVLMTCKAIGNPTPNIYWIKNQTKVD 152
Query: 237 RLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
                    +S+ R++L  G L I + R+ ED+G Y C A N  G+  S++  L
Sbjct: 153 ---------MSNPRYSLKDGFLQIENSRE-EDQGKYECVAENSMGTEHSKATNL 196

>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 10/79 (12%)
Query: 485 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 544
           + ++C A G P P+  W K     D         +S+ R++L  G L I + R+ ED+G 
Sbjct: 128 VLMTCKAIGNPTPNIYWIKNQTKVD---------MSNPRYSLKDGFLQIENSRE-EDQGK 177
Query: 545 YHCKASNKFGSIISESVQL 563
           Y C A N  G+  S++  L
Sbjct: 178 YECVAENSMGTEHSKATNL 196

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 6/109 (5%)
Query: 694 CVAFGYPVPSYNWTRRGSPLP----RNAYFENFNRILTIPNVKVEDQGEYICRASND-RS 748
           C    YP P  +WTR    +     R +  EN  ++LTI +V+  D G Y C A+N    
Sbjct: 29  CAVESYPQPEISWTRNKILIKLFDTRYSIREN-GQLLTILSVEDSDDGIYCCTANNGVGG 87
Query: 749 ALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFR 797
           A+ES   + ++ +P  T P  +  +         C   G P  + SW +
Sbjct: 88  AVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIK 136

>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 9/122 (7%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRG-----SPLPR-NAYFENFNRILTIPNVKVEDQGEYI 740
           G     E    G+PVP  +W R G     S LP     F +    LTIP V   + G Y 
Sbjct: 20  GSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYS 79
Query: 741 CRASNDRSALESSVTISIQAE---PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFR 797
            +A+N      S+  + ++AE   PNF   L    +   + +       G+P     ++R
Sbjct: 80  LKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYR 139
Query: 798 NG 799
           +G
Sbjct: 140 DG 141

>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 9/122 (7%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRG-----SPLPR-NAYFENFNRILTIPNVKVEDQGEYI 740
           G     E    G+PVP  +W R G     S LP     F +    LTIP V   + G Y 
Sbjct: 20  GSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYS 79
Query: 741 CRASNDRSALESSVTISIQAE---PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFR 797
            +A+N      S+  + ++AE   PNF   L    +   + +       G+P     ++R
Sbjct: 80  LKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYR 139
Query: 798 NG 799
           +G
Sbjct: 140 DG 141

>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 70/191 (36%), Gaps = 28/191 (14%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDI-TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
           P FIK+P D +       +   + +  C A G P P   W K+    +      I+    
Sbjct: 7   PRFIKEPKDQI------GVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIE---- 56
Query: 249 KRFTLSGGNLIINDP-RQVEDRGSYHCKASNKFGSIISESV-------QLAFGFIGEFNL 300
             F  S G ++   P R   D   Y C A N  G I   +        QL  GF    N+
Sbjct: 57  --FDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFP---NI 111
Query: 301 KRAPEIG--NQNWGKAMFCDPPTNYPGVNYYWARDYFP-NFVEEDKRVFVSYDGALYFSA 357
              P++    +     M C    N P     W +D+ P +    + R+     GAL   +
Sbjct: 112 DMGPQLKVVERTRTATMLCAASGN-PDPEITWFKDFLPVDPSASNGRIKQLRSGALQIES 170
Query: 358 LEQIDAGNYSC 368
            E+ D G Y C
Sbjct: 171 SEETDQGKYEC 181

>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 70/191 (36%), Gaps = 28/191 (14%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDI-TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 521
           P FIK+P D +       +   + +  C A G P P   W K+    +      I+    
Sbjct: 7   PRFIKEPKDQI------GVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIE---- 56
Query: 522 KRFTLSGGNLIINDP-RQVEDRGSYHCKASNKFGSIISESV-------QLAFGFIGEFNL 573
             F  S G ++   P R   D   Y C A N  G I   +        QL  GF    N+
Sbjct: 57  --FDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFP---NI 111
Query: 574 KRAPEIG--NQNWGKAMFCDPPTNYPGVNYYWARDYFP-NFVEEDKRVFVSYDGALYFSA 630
              P++    +     M C    N P     W +D+ P +    + R+     GAL   +
Sbjct: 112 DMGPQLKVVERTRTATMLCAASGN-PDPEITWFKDFLPVDPSASNGRIKQLRSGALQIES 170
Query: 631 LEQIDAGNYSC 641
            E+ D G Y C
Sbjct: 171 SEETDQGKYEC 181

>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 678 KTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF--ENFNRILTIPNVKVED 735
           K+F    + G+++   C A G P P+ +W R G  +  N  +  +  N  LT+ N+   D
Sbjct: 104 KSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSD 163
Query: 736 QGEYICRASN 745
            G Y+CRA+N
Sbjct: 164 GGPYVCRATN 173

>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 70/191 (36%), Gaps = 28/191 (14%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDI-TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
           P FIK+P D +       +   + +  C A G P P   W K+    +      I+    
Sbjct: 7   PRFIKEPKDQI------GVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIE---- 56
Query: 249 KRFTLSGGNLIINDP-RQVEDRGSYHCKASNKFGSIISESV-------QLAFGFIGEFNL 300
             F  S G ++   P R   D   Y C A N  G I   +        QL  GF    N+
Sbjct: 57  --FDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFP---NI 111
Query: 301 KRAPEIG--NQNWGKAMFCDPPTNYPGVNYYWARDYFP-NFVEEDKRVFVSYDGALYFSA 357
              P++    +     M C    N P     W +D+ P +    + R+     GAL   +
Sbjct: 112 DMGPQLKVVERTRTATMLCAASGN-PDPEITWFKDFLPVDPSASNGRIKQLRSGALQIES 170
Query: 358 LEQIDAGNYSC 368
            E+ D G Y C
Sbjct: 171 SEETDQGKYEC 181

>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 70/191 (36%), Gaps = 28/191 (14%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDI-TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 521
           P FIK+P D +       +   + +  C A G P P   W K+    +      I+    
Sbjct: 7   PRFIKEPKDQI------GVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIE---- 56
Query: 522 KRFTLSGGNLIINDP-RQVEDRGSYHCKASNKFGSIISESV-------QLAFGFIGEFNL 573
             F  S G ++   P R   D   Y C A N  G I   +        QL  GF    N+
Sbjct: 57  --FDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFP---NI 111
Query: 574 KRAPEIG--NQNWGKAMFCDPPTNYPGVNYYWARDYFP-NFVEEDKRVFVSYDGALYFSA 630
              P++    +     M C    N P     W +D+ P +    + R+     GAL   +
Sbjct: 112 DMGPQLKVVERTRTATMLCAASGN-PDPEITWFKDFLPVDPSASNGRIKQLRSGALQIES 170
Query: 631 LEQIDAGNYSC 641
            E+ D G Y C
Sbjct: 171 SEETDQGKYEC 181

>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A New Domain Arrangement With Implications For Homophilic Adhesion Length = 395

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 71/342 (20%), Positives = 121/342 (35%), Gaps = 62/342 (18%)
Query: 256 GNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAM 315
           G+L+   P Q  D G Y C A    G   S  +     ++     K   +   +     +
Sbjct: 62  GSLVFLRP-QASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQL 120
Query: 316 FCDPPTNYPGVNYYWAR-----DYFPNFVEEDKRVFVSYDGALYFSALEQIDAGN---YS 367
            C  P  YP     W +     D   +  + D+R+    DG LYF+ + + D  +   Y 
Sbjct: 121 DCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYV 180
Query: 368 CNVQSKVSDTGRNGPFFPLKVFPHSN--FQQLKFPNNFPKTFPEAPKAGDKVRLECVAFG 425
           C  ++   D       + +K     N  ++    P    K      KAGD   + C+   
Sbjct: 181 CTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDM--MAKAGDVTMIYCMYGS 238
Query: 426 YPVPSYNWTRRGSPLPRNA--YFENFNRI--------LTIPN------------------ 457
            P+   N+ + G  +  N        NR          T+P                   
Sbjct: 239 NPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQK 298
Query: 458 -----VKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLV 512
                  +  P + ++P  V+  + K+    D+T+ C   G P P+  W           
Sbjct: 299 HSLKLTVVSAPKYEQKPEKVI--VVKQG--QDVTIPCKVTGLPAPNVVW----------- 343
Query: 513 ANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFG 554
           ++   PLS  R T++   L+I   +   D+G Y C+A+N+ G
Sbjct: 344 SHNAKPLSGGRATVTDSGLVIKGVKN-GDKGYYGCRATNEHG 384

>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A New Domain Arrangement With Implications For Homophilic Adhesion Length = 395

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 98/279 (35%), Gaps = 44/279 (15%)
Query: 493 GYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS-GGNL--IINDPRQVEDRGSYHCKA 549
            YP P   W K     D   A++ D   D+R T    GNL   I     V D   Y C A
Sbjct: 127 AYPKPLITWKKRLSGADPN-ADVTD--FDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTA 183
Query: 550 SNKFGSIISESVQLA-----------FGFIGE-----FNLKRAPEIGNQNWGKAMFCDPP 593
            N   + + E V L             G+ GE      +     + G+      M+   P
Sbjct: 184 KN---AAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNP 240
Query: 594 TNYPGVNYYW-ARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGR 652
             YP  NY+   +D   N  +   R   +    L F      D G Y+C V + V    +
Sbjct: 241 MGYP--NYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQK 298
Query: 653 NGPFFPLKVFPHSNFQQLKFPNNFPKTFPE---APKAGDKVRLECVAFGYPVPSYNWTRR 709
           +     L V     ++Q           PE     K G  V + C   G P P+  W+  
Sbjct: 299 HS--LKLTVVSAPKYEQK----------PEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHN 346
Query: 710 GSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRS 748
             PL         +  L I  VK  D+G Y CRA+N+  
Sbjct: 347 AKPL-SGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHG 384

>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 16/114 (14%)
Query: 178 MDIENPDKIPRG-PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQD 236
           + I   DK P G P   + P   V ++      + + ++C A G P P+  W K     D
Sbjct: 100 LTIYEGDKTPAGFPVITQGPGTRVIEVG-----HTVLMTCKAIGNPTPNIYWIKNQTKVD 154
Query: 237 RLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
                    +S+ R++L  G L I + R+ ED+G Y C A N  G+  S++  L
Sbjct: 155 ---------MSNPRYSLKDGFLQIENSRE-EDQGKYECVAENSMGTEHSKATNL 198

>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 117

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 13/105 (12%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           P  ++ P+D++    + +     TL+C A G P P+ EW+K     +R+  +  DP S  
Sbjct: 10  PRIVEHPSDLIVSKGEPA-----TLNCKAEGRPTPTIEWYKGG---ERVETDKDDPRS-H 60
Query: 250 RFTLSGGNL----IINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
           R  L  G+L    I++  +   D G Y C A N  G  +S    L
Sbjct: 61  RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASL 105

>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 117

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 13/105 (12%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
           P  ++ P+D++    + +     TL+C A G P P+ EW+K     +R+  +  DP S  
Sbjct: 10  PRIVEHPSDLIVSKGEPA-----TLNCKAEGRPTPTIEWYKGG---ERVETDKDDPRS-H 60
Query: 523 RFTLSGGNL----IINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
           R  L  G+L    I++  +   D G Y C A N  G  +S    L
Sbjct: 61  RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASL 105

>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure Length = 424

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 65/172 (37%), Gaps = 18/172 (10%)
Query: 625 ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP 684
            L    + + D G Y+C   S +  T +N  F  +   P   F       +  ++  EA 
Sbjct: 161 TLTIDGVTRSDQGLYTCAASSGLM-TKKNSTFVRVHEKPFVAF------GSGMESLVEA- 212
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRAS 744
             G++VR+     GYP P   W + G PL  N   +    +LTI  V   D G Y    +
Sbjct: 213 TVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKA-GHVLTIMEVSERDTGNYTVILT 271
Query: 745 NDRSALESSVTISIQ-------AEPNFTIPLTDKHMDNQADLTWTCEAFGVP 789
           N  S  + S  +S+         E +   P+          L  TC  + +P
Sbjct: 272 NPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTL--TCTVYAIP 321

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 72/196 (36%), Gaps = 38/196 (19%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDI-TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
           P F+K P D      +  +   + +  C A G P P   W K+              +S 
Sbjct: 8   PVFVKVPED------QTGLSGGVASFVCQATGEPKPRITWMKKG-----------KKVSS 50
Query: 249 KRFTL------SGGNLIINDPRQVEDRGSYHCKASNKFGSI-------ISESVQLAFGFI 295
           +RF +      +G  L I   R   D   Y C A+N  G I       + E  QL  GF 
Sbjct: 51  QRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFP 110
Query: 296 GEFNLKRAPEIGNQNWGK--AMFCDPPTNYPGVNYYWARDYFP-NFVEEDKRVFVSYDGA 352
               +   P++     G+   M C    N P     W +D+ P +    + R+     GA
Sbjct: 111 ---TIDMGPQLKVVEKGRTATMLCAAGGN-PDPEISWFKDFLPVDPAASNGRIKQLRSGA 166
Query: 353 LYFSALEQIDAGNYSC 368
           L   + E+ D G Y C
Sbjct: 167 LQIESSEESDQGKYEC 182

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 72/196 (36%), Gaps = 38/196 (19%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDI-TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 521
           P F+K P D      +  +   + +  C A G P P   W K+              +S 
Sbjct: 8   PVFVKVPED------QTGLSGGVASFVCQATGEPKPRITWMKKG-----------KKVSS 50
Query: 522 KRFTL------SGGNLIINDPRQVEDRGSYHCKASNKFGSI-------ISESVQLAFGFI 568
           +RF +      +G  L I   R   D   Y C A+N  G I       + E  QL  GF 
Sbjct: 51  QRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFP 110
Query: 569 GEFNLKRAPEIGNQNWGK--AMFCDPPTNYPGVNYYWARDYFP-NFVEEDKRVFVSYDGA 625
               +   P++     G+   M C    N P     W +D+ P +    + R+     GA
Sbjct: 111 ---TIDMGPQLKVVEKGRTATMLCAAGGN-PDPEISWFKDFLPVDPAASNGRIKQLRSGA 166
Query: 626 LYFSALEQIDAGNYSC 641
           L   + E+ D G Y C
Sbjct: 167 LQIESSEESDQGKYEC 182

>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr Length = 106

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----NFNRILTIPNVKVEDQGEYICR 742
           G+  R  C   G PVP+  W R+G  L  +A  +     +     I +V+  D+G Y   
Sbjct: 29  GESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVV 88
Query: 743 ASNDRSALESSVTISIQ 759
             N     E+  T++IQ
Sbjct: 89  VENSEGKQEAEFTLTIQ 105

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 48/194 (24%), Positives = 71/194 (36%), Gaps = 34/194 (17%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDI-TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
           P FIK P D      +  +   + +  C A G P P   W K+              +S 
Sbjct: 7   PVFIKVPED------QTGLSGGVASFVCQATGEPKPRITWMKKG-----------KKVSS 49
Query: 249 KRFTL------SGGNLIINDPRQVEDRGSYHCKASNKFGSI-------ISESVQLAFGFI 295
           +RF +      +G  L I   R   D   Y C A+N  G I       + E  QL  GF 
Sbjct: 50  QRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGF- 108
Query: 296 GEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFP-NFVEEDKRVFVSYDGALY 354
              ++    ++  +     M C    N P     W +D+ P +    + R+     GAL 
Sbjct: 109 PSIDMGPQLKVVEKARTATMLCAAGGN-PDPEISWFKDFLPVDPATSNGRIKQLRSGALQ 167
Query: 355 FSALEQIDAGNYSC 368
             + E+ D G Y C
Sbjct: 168 IESSEESDQGKYEC 181

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 48/194 (24%), Positives = 71/194 (36%), Gaps = 34/194 (17%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDI-TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 521
           P FIK P D      +  +   + +  C A G P P   W K+              +S 
Sbjct: 7   PVFIKVPED------QTGLSGGVASFVCQATGEPKPRITWMKKG-----------KKVSS 49
Query: 522 KRFTL------SGGNLIINDPRQVEDRGSYHCKASNKFGSI-------ISESVQLAFGFI 568
           +RF +      +G  L I   R   D   Y C A+N  G I       + E  QL  GF 
Sbjct: 50  QRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGF- 108
Query: 569 GEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFP-NFVEEDKRVFVSYDGALY 627
              ++    ++  +     M C    N P     W +D+ P +    + R+     GAL 
Sbjct: 109 PSIDMGPQLKVVEKARTATMLCAAGGN-PDPEISWFKDFLPVDPATSNGRIKQLRSGALQ 167
Query: 628 FSALEQIDAGNYSC 641
             + E+ D G Y C
Sbjct: 168 IESSEESDQGKYEC 181

>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2 Length = 182

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 20/125 (16%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI------------LTIPNVKVE 734
           G  V+L C   G   P   W + G      A  +N +++            L++ +V+  
Sbjct: 17  GQPVKLNCSVEGXEEPDIQWVKDG------AVVQNLDQLYIPVSEQHWIGFLSLKSVERS 70
Query: 735 DQGEYICRASND-RSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPD-VT 792
           D G Y C+  +   + +   V ++++  P FT+   D  +   A    +CEA G P+ VT
Sbjct: 71  DAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVT 130
Query: 793 YSWFR 797
             W+R
Sbjct: 131 IVWWR 135

>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From The Muscle Protein Titin: A New Member Of The I Set Length = 100

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----NFNRILTIPNVKVEDQGEYICR 742
           G+  R  C   G PVP+  W R+G  L  +A  +     +     I +V+  D+G Y   
Sbjct: 23  GESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVV 82
Query: 743 ASNDRSALESSVTISIQ 759
             N     E+  T++IQ
Sbjct: 83  VENSEGKQEAEFTLTIQ 99

>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule Type 1 Length = 209

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 64/176 (36%), Gaps = 18/176 (10%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVA--NLIDPLSDKRFTLSGGNLIINDPRQVE 267
           N + LSC   G+ +P  EW  +     RLV   N I    + R T     +      + E
Sbjct: 20  NPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTR-E 78
Query: 268 DRGSYHCKAS----NKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNY 323
           D G+Y C  S    N +G +  + + L        N+  +  IGN+     + C      
Sbjct: 79  DTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNR---AVLTCSEQDGS 135
Query: 324 PGVNYYWARD--YFPNFVEEDKR------VFVSYDGALYFSALEQIDAGNYSCNVQ 371
           P   Y W +D    P   +  +       V     G L F  L   D G YSC  +
Sbjct: 136 PPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEAR 191

>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule Type 1 Length = 209

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 64/176 (36%), Gaps = 18/176 (10%)
Query: 483 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVA--NLIDPLSDKRFTLSGGNLIINDPRQVE 540
           N + LSC   G+ +P  EW  +     RLV   N I    + R T     +      + E
Sbjct: 20  NPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTR-E 78
Query: 541 DRGSYHCKAS----NKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNY 596
           D G+Y C  S    N +G +  + + L        N+  +  IGN+     + C      
Sbjct: 79  DTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNR---AVLTCSEQDGS 135
Query: 597 PGVNYYWARD--YFPNFVEEDKR------VFVSYDGALYFSALEQIDAGNYSCNVQ 644
           P   Y W +D    P   +  +       V     G L F  L   D G YSC  +
Sbjct: 136 PPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEAR 191

>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The Neural Cell Adhesion Molecule Length = 107

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 690 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFN-----RILTIPNVKVEDQGEYICRAS 744
           V L C A G+P P+  WT+ G P+ +    E ++       L I  V   D+ EYIC A 
Sbjct: 31  VTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELIIKKVDKSDEAEYICIAE 90
Query: 745 NDRSALESSVTISIQAE 761
           N     ++++ + + A+
Sbjct: 91  NKAGEQDATIHLKVFAK 107

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	813
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-105
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-83
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	6e-65
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-63
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	8e-53
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	9e-12
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	5e-98
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	8e-90
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	7e-42
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	3e-95
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-86
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	3e-42
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	5e-90
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	6e-82
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	9e-41
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	1e-86
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	1e-75
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-36
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-86
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-55
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-52
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	8e-81
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-77
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	4e-40
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	6e-71
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-70
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-55
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	3e-60
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-54
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	7e-46
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	3e-04
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-58
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-50
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-38
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-35
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-12
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-52
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-44
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	5e-38
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	3e-37
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	5e-23
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	5e-09
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	1e-51
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	2e-39
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	3e-17
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	1e-13
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	4e-12
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	4e-12
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	4e-48
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-38
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	2e-37
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	5e-31
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	5e-27
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-26
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	4e-42
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	1e-30
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	3e-25
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	2e-23
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	2e-22
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	5e-15
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	2e-09
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	3e-38
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	6e-27
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-26
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	7e-26
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	8e-26
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-23
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-17
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-11
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	6e-38
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-33
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-33
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	3e-31
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	8e-29
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-17
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	7e-38
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	7e-29
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-22
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	1e-18
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	1e-10
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	1e-08
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	2e-37
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	6e-28
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-27
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	7e-26
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-25
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-20
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	2e-20
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	2e-10
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	9e-37
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	4e-31
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	6e-27
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	5e-26
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	3e-25
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	2e-16
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	1e-10
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-32
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-23
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	6e-22
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	5e-09
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-07
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	9e-32
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-29
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	7e-25
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-23
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	4e-22
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	2e-21
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	7e-13
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	2e-08
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	4e-30
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	6e-20
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	4e-19
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	1e-17
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	1e-10
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-08
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	9e-30
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	1e-20
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	4e-20
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	5e-09
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	3e-07
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	4e-29
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	2e-20
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	2e-18
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	1e-09
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	5e-08
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-28
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-22
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	2e-20
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-14
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	4e-14
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	6e-05
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	3e-28
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	9e-24
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	3e-19
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	2e-15
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	2e-12
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	4e-28
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	8e-22
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	6e-16
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	8e-15
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	5e-28
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	1e-25
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	3e-20
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	5e-20
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	3e-19
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	3e-16
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	2e-11
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	8e-28
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	1e-19
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	4e-17
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	1e-16
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	4e-11
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	4e-07
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	3e-27
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-22
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-20
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	1e-17
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	1e-04
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	3e-26
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	7e-26
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	4e-20
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	5e-20
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	2e-13
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	4e-06
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	3e-26
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	4e-23
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	2e-17
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	1e-16
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	3e-12
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	8e-11
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	3e-10
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	4e-26
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	2e-23
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	8e-17
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	1e-14
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	1e-12
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	5e-09
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	8e-26
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	3e-24
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	4e-23
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-21
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	7e-20
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	3e-15
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	3e-11
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	3e-05
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	8e-26
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	1e-22
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	2e-18
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	7e-18
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	7e-18
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	9e-14
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	4e-04
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	9e-26
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	3e-20
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	1e-16
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	3e-16
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	2e-11
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	4e-08
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	9e-26
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	3e-22
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	2e-16
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	3e-16
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	4e-16
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	1e-08
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	1e-07
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	3e-25
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	2e-20
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	4e-18
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	1e-14
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	1e-14
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	2e-11
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	2e-10
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	2e-04
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	3e-25
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	3e-24
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-21
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	2e-16
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	5e-16
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	5e-25
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	9e-16
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	3e-15
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	6e-15
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	5e-11
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	9e-07
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	8e-25
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	8e-25
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	3e-22
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	3e-18
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	7e-17
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	1e-14
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	2e-07
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	1e-24
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	1e-24
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	3e-21
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	8e-19
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	7e-16
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-14
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-05
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	4e-24
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	3e-21
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	3e-20
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	2e-18
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	2e-11
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	4e-24
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	4e-19
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	5e-18
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	3e-15
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	3e-15
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	8e-11
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	4e-09
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	6e-24
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	4e-22
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	1e-21
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	1e-19
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	1e-19
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	1e-12
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	6e-12
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	4e-04
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	6e-23
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	2e-22
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	5e-21
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	5e-21
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	1e-18
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	7e-17
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	5e-11
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	6e-23
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	8e-20
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	2e-18
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	9e-15
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	9e-15
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	2e-11
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	4e-10
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	7e-06
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	8e-23
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	5e-18
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	1e-17
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	5e-14
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	5e-14
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	6e-09
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	4e-08
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	2e-22
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	3e-16
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	6e-15
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	5e-12
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	3e-09
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-22
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	6e-20
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-19
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	8e-19
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	8e-19
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	3e-13
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	4e-11
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-22
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	3e-18
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	1e-17
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	3e-14
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	6e-14
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-09
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-07
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	3e-22
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	1e-18
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	2e-18
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	3e-13
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	1e-12
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	5e-12
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	3e-09
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	4e-22
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	7e-15
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	2e-14
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	2e-13
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	5e-09
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	3e-06
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	4e-22
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	3e-20
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	3e-20
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	1e-17
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	1e-17
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	3e-10
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	5e-22
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	5e-21
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-17
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-15
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-15
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-14
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	1e-07
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	8e-22
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	5e-15
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	5e-15
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	6e-10
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	6e-06
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	1e-21
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	7e-12
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	1e-10
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	1e-08
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	1e-08
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	2e-20
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	1e-15
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	2e-11
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	3e-11
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	1e-09
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	4e-09
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	4e-09
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	2e-20
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	2e-17
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	8e-17
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	9e-15
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	9e-15
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	2e-13
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	6e-11
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-20
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-18
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-16
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	3e-10
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	3e-08
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	3e-20
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	5e-15
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	1e-11
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	1e-11
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	3e-11
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	1e-09
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	1e-09
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	9e-20
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	1e-17
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	1e-16
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	2e-09
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	4e-09
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	1e-08
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	2e-19
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	2e-15
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	5e-14
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	1e-09
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	6e-09
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	1e-07
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	3e-19
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	4e-14
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	4e-14
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	4e-07
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	3e-05
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	1e-18
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	9e-18
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	2e-15
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	1e-09
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	9e-09
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	3e-08
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	1e-18
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	1e-12
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	1e-12
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	2e-08
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	2e-18
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	1e-16
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	1e-13
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	2e-08
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	2e-07
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	3e-18
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	4e-15
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	8e-11
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	8e-09
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	8e-09
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	2e-08
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	4e-08
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	4e-18
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	2e-15
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	4e-11
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	5e-11
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	1e-09
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	1e-06
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	3e-04
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	4e-18
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	2e-16
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	2e-13
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	2e-13
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	4e-09
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	1e-08
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	5e-18
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	2e-12
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	2e-12
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	2e-07
2ens_A	96	Advanced glycosylation END product-specific recept	9e-18
2ens_A	96	Advanced glycosylation END product-specific recept	8e-12
2ens_A	96	Advanced glycosylation END product-specific recept	8e-12
2ens_A	96	Advanced glycosylation END product-specific recept	3e-07
2ens_A	96	Advanced glycosylation END product-specific recept	3e-04
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	1e-17
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	1e-17
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	8e-14
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	4e-05
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	1e-17
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	3e-16
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	3e-12
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	4e-08
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	6e-07
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	3e-06
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	1e-17
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	5e-17
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	2e-14
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	4e-10
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	1e-06
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	1e-06
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	2e-17
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	3e-11
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	3e-11
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	1e-07
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	3e-17
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	1e-15
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	8e-14
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	8e-10
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	3e-06
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	3e-17
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	1e-11
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	1e-11
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	9e-04
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	4e-17
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	3e-14
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	3e-14
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	1e-05
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	6e-17
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	8e-12
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	8e-12
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	3e-06
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	2e-16
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	9e-09
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	9e-09
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	8e-08
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	2e-16
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	4e-16
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	2e-10
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	3e-10
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	3e-10
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	3e-09
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	8e-06
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	3e-16
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	8e-14
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	9e-11
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	7e-10
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	2e-07
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	2e-07
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	6e-07
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	4e-16
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	3e-10
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	3e-10
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	1e-05
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	5e-16
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	4e-14
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	4e-14
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	2e-06
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	8e-06
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	5e-16
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	2e-13
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	3e-13
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	3e-05
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	7e-16
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	5e-09
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	5e-09
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	2e-07
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	8e-16
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	1e-13
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	1e-13
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	2e-06
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	2e-15
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	5e-08
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	5e-08
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	2e-04
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	2e-15
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	1e-11
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	1e-11
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	4e-05
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	5e-04
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	3e-15
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	4e-10
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	4e-10
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	2e-05
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	3e-15
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	3e-10
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	5e-09
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	1e-08
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	4e-06
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	4e-06
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	3e-15
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	3e-11
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	5e-11
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	1e-06
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	3e-15
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	3e-12
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	3e-12
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	3e-05
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	4e-15
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	7e-13
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	7e-13
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	8e-05
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	2e-04
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	4e-15
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	5e-09
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	5e-09
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	1e-05
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	5e-15
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	6e-12
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	6e-12
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	7e-05
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	1e-14
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	3e-11
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	2e-10
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	4e-05
3vpp_A	132	C-type lectin domain family 9 member A; dendritic	1e-14
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-14
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-08
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	2e-14
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	2e-10
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	3e-10
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	6e-10
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	3e-08
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	3e-08
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	2e-07
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	2e-14
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	6e-14
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	4e-09
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	3e-08
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	6e-07
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	3e-04
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	2e-14
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	7e-14
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	6e-11
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	7e-08
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	8e-06
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	2e-05
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	5e-14
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	1e-09
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	1e-09
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	3e-04
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	5e-14
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	5e-11
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	5e-11
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	2e-04
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	7e-14
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	1e-10
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	1e-10
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	6e-07
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	2e-04
1tdq_B	130	Aggrecan core protein; extracellular matrix, lecti	7e-14
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	9e-14
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	3e-05
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	3e-05
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	6e-04
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	9e-14
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	3e-07
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	6e-07
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	2e-05
1sl6_A	184	C-type lectin DC-signr; sugar binding protein; HET	1e-13
1ypq_A	135	Oxidised low density lipoprotein (lectin-like) rec	1e-13
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	2e-13
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	3e-09
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	3e-09
1fm5_A	199	Early activation antigen CD69; C-type lectin-like	2e-13
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	2e-13
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	2e-12
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	4e-12
2xr6_A	170	CD209 antigen; sugar binding protein, carbohydrate	2e-13
3hup_A	130	Early activation antigen CD69; C-type lectin-like	3e-13
2b6b_D	175	CD209 antigen; cryo EM dengue CRD DC-SIGN, icosahe	3e-13
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	3e-13
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	1e-10
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	2e-10
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	3e-13
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	3e-10
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	3e-07
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	4e-13
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	1e-08
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	2e-05
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	2e-05
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	2e-05
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	2e-05
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	3e-05
3rs1_A	122	C-type lectin domain family 2 member I; C-type lec	4e-13
2bpd_A	142	Dectin-1; receptor, beta-glucan, fungal recognitio	4e-13
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	5e-13
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	1e-08
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	3e-08
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	3e-08
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	3e-05
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	3e-05
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	5e-04
2zib_A	133	Type II antifreeze protein; thermal hysteresis, le	7e-13
2py2_A	136	Antifreeze protein type II; type II antifreeze pro	7e-13
2ls8_A	156	C-type lectin domain family 4 member D; structural	1e-12
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	1e-12
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	5e-04
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	5e-04
3m9z_A	139	Killer cell lectin-like receptor subfamily B MEMB;	1e-12
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	1e-12
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	3e-04
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	3e-04
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	1e-12
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	2e-04
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	2e-04
2c6u_A	122	CLEC1B protein; lectin, rhodocytin, aggretin, C-ty	2e-12
2afp_A	129	Protein (SEA raven type II antifreeze protein); re	2e-12
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	2e-12
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	2e-06
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	2e-06
3bdw_B	120	NKG2-A/NKG2-B type II integral membrane protein; N	2e-12
2vuv_A	129	Codakine; sugar-binding protein, C-type, lectin, m	2e-12
3bdw_A	123	Natural killer cells antigen CD94; NK cells, recep	2e-12
3ff7_C	112	Killer cell lectin-like receptor subfamily G membe	2e-12
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	2e-12
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	2e-04
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	4e-04
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	4e-04
3kqg_A	182	Langerin, C-type lectin domain family 4 member K;	2e-12
2yhf_A	118	C-type lectin domain family 5 member A; immune sys	3e-12
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	3e-12
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	6e-04
3c22_A	156	C-type lectin domain family 4 member K; coiled coi	3e-12
2ox9_A	140	Collectin placenta 1; C-type lectin, sugar binding	3e-12
3g8k_A	130	Lectin-related NK cell receptor LY49L1; natural ki	3e-12
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	4e-12
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	1e-08
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	1e-08
1hq8_A	123	NKG2-D; homodimer, CIS-proline, apoptosis; 1.95A {	4e-12
3ff9_A	115	Killer cell lectin-like receptor subfamily G membe	4e-12
1mpu_A	138	NKG2-D type II integral membrane protein; C-type l	4e-12
1dv8_A	128	Asialoglycoprotein receptor 1; C-type lectin CRD,	5e-12
2h2t_B	175	Low affinity immunoglobulin epsilon FC receptor (	5e-12
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	5e-12
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	3e-04
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	3e-04
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	5e-12
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	2e-05
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	3e-05
1jwi_B	125	Platelet aggregation inducer; domain swapping, C-t	6e-12
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	7e-12
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	6e-05
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	6e-05
3c8j_A	203	Natural killer cell receptor LY49C; MHC, virus, im	8e-12
1qdd_A	144	Lithostathine; pancreatic stone inhibitor, metal b	8e-12
2e3x_C	122	Coagulation factor X-activating enzyme light CHAI;	9e-12
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	1e-11
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	1e-05
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	1e-05
3ubu_B	126	Agglucetin subunit beta-2; platelet inhibiting, ag	1e-11
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	1e-11
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	9e-05
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	2e-04
1htn_A	182	Tetranectin; plasminogen binding, kringle 4, alpha	1e-11
1wmz_A	140	Lectin CEL-I, N-acetyl-D-galactosamine-specific C-	1e-11
1tn3_A	137	Tetranectin; plasminogen binding, kringle 4, C-typ	1e-11
3gpr_D	124	Rhodocetin subunit delta; disulfide bond, lectin,	2e-11
1umr_C	125	Convulxin beta, CVX beta; lectin, C-type lectin, p	2e-11
3pbf_A	148	Pulmonary surfactant-associated protein A; collect	2e-11
3bx4_B	146	Aggretin beta chain; toxin; 1.70A {Agkistrodon rho	2e-11
1pwb_A	177	SP-D, PSP-D, pulmonary surfactant-associated prote	2e-11
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	2e-11
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	2e-09
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	5e-06
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	5e-06
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	1e-05
1jwi_A	131	Bitiscetin; domain swapping, C-type lectin, toxin;	2e-11
1j34_B	123	Coagulation factor IX-binding protein B chain; mag	3e-11
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	3e-11
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	3e-11
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	9e-08
2kv3_A	131	Regenerating islet-derived protein 4; GISP, C-type	3e-11
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	3e-11
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	5e-06
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	5e-06
3g8l_A	190	Lectin-related NK cell receptor LY49L1; natural ki	3e-11
1c3a_B	125	Flavocetin-A: beta subunit; C-type lectin-like dom	3e-11
1fvu_B	125	Botrocetin beta chain; VON WILLBRAND factor modula	4e-11
1ukm_B	128	EMS16 B chain, EMS16 subunit B; domain swapping, C	4e-11
3ubu_A	131	Agglucetin subunit alpha-1; platelet inhibiting, a	4e-11
1egg_A	147	Macrophage mannose receptor; C-type lectin, sugar	4e-11
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	6e-11
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	1e-04
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	1e-04
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	7e-11
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	3e-08
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	2e-05
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	2e-04
1oz7_B	123	Echicetin B-chain; platelet aggregation, dimer, to	7e-11
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	8e-11
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	1e-05
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	2e-05
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	9e-11
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	6e-09
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	2e-05
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	3e-04
1oz7_A	131	Echicetin A-chain; platelet aggregation, dimer, to	9e-11
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	1e-10
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	2e-05
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	1e-04
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	8e-04
1he7_A	126	High affinity nerve growth factor receptor; transf	1e-10
1he7_A	126	High affinity nerve growth factor receptor; transf	2e-08
1he7_A	126	High affinity nerve growth factor receptor; transf	2e-08
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	1e-10
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	1e-10
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	4e-09
1jzn_A	135	Galactose-specific lectin; C-type lectin, protein-	1e-10
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	2e-10
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	2e-04
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	3e-04
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	2e-10
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	1e-09
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	4e-05
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	5e-05
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	6e-04
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	2e-10
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	2e-09
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	2e-09
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	9e-09
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	2e-08
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	2e-08
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	3e-10
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	8e-06
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	8e-06
1sb2_B	129	Rhodocetin beta subunit; C-type lectin, domain swa	3e-10
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	4e-10
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	1e-06
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	6e-06
1umr_A	135	Convulxin alpha, CVX alpha; lectin, C-type lectin,	5e-10
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	6e-10
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	8e-10
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	1e-09
1uv0_A	149	Pancreatitis-associated protein 1; lectin, C-type,	9e-10
1c3a_A	135	Flavocetin-A: alpha subunit; C-type lectin-like do	1e-09
1gz2_A	142	Ovocleidin-17, OC-17 ovocleidin; structural protei	1e-09
1ukm_A	134	EMS16 A chain, EMS16 subunit A; domain swapping, C	2e-09
1rtm_1	149	Mannose-binding protein-A; lectin; 1.80A {Rattus n	2e-09
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	2e-09
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	2e-09
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	4e-07
1j34_A	129	Coagulation factor IX-binding protein A chain; mag	2e-09
1hup_A	141	Mannose-binding protein; alpha-helical coiled-coil	2e-09
1sb2_A	133	Rhodocetin alpha subunit; C-type lectin, domain sw	2e-09
3gpr_C	134	Rhodocetin subunit gamma; disulfide bond, lectin,	2e-09
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	3e-09
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	2e-06
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	2e-06
1buu_A	168	Protein (mannose-binding protein A); lectin, HOST	3e-09
2e3x_B	134	Coagulation factor X-activating enzyme light CHAI;	3e-09
3bx4_A	136	Aggretin alpha chain; toxin; 1.70A {Agkistrodon rh	3e-09
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	4e-09
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	5e-07
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	5e-07
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	6e-07
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	6e-04
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	6e-09
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	6e-06
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	2e-04
3alu_A	157	Lectin CEL-IV, C-type; C-type lectin, raffinose, s	7e-09
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	8e-09
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	9e-09
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	2e-08
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	4e-04
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	9e-09
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	1e-08
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	6e-06
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	1e-05
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	7e-05
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	8e-04
1fvu_A	133	Botrocetin alpha chain; VON WILLBRAND factor modul	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-05
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	3e-08
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	3e-06
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	3e-06
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	3e-08
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	4e-06
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	9e-06
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	5e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-05
1wk1_A	150	Hypothetical protein YK1067A12; lectin C-type doma	1e-07
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	2e-07
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	6e-06
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	3e-05
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	2e-07
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	5e-04
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	3e-07
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	1e-05
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	2e-05
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	3e-07
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	9e-04
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	9e-04
1byf_A	125	TC14, protein (polyandrocarpa lectin); C-type lect	5e-07
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	8e-07
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	1e-06
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	2e-05
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	1e-06
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	1e-06
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	3e-05
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	3e-05
2msb_A	115	Mannose-binding protein-A; lectin; HET: BMA MAN; 1	1e-06
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	2e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-06
1rdl_1	113	SUB-MBP-C, mannose-binding protein-C; C-type lecti	5e-06
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	1e-05
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	6e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-05
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	3e-05
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	5e-04
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	3e-05
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	5e-05
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	1e-04
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	5e-05
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	8e-04
1xiw_A	105	T-cell surface glycoprotein CD3 epsilon chain; CD3	6e-05
1xiw_A	105	T-cell surface glycoprotein CD3 epsilon chain; CD3	6e-05
3cfw_A	164	L-selectin; EGF, cell adhesion, EGF-like domain, g	7e-05
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	8e-05
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	1e-04
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	2e-04
1h8u_A	117	MBP, eosinophil granule major basic protein 1; lec	1e-04
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	3e-04
3fd4_A	191	Glycoprotein GP42; C type lectin, virus entry, mem	3e-04
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	3e-04
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	3e-04
2aw2_A	120	B and T lymphocyte attenuator; IGI domain, IGG dom	3e-04
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	4e-04
1g1t_A	157	E-selectin; EGF, adhesion molecule, SLEX, immune s	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	7e-04

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  340 bits (873), Expect = e-105
 Identities = 130/685 (18%), Positives = 203/685 (29%), Gaps = 124/685 (18%)

Query: 183 PDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANL 242
           PD   +GP F+K+PT+ +   +         + C A G P P   W + D          
Sbjct: 32  PDADQKGPVFLKEPTNRIDFSNS----TGAEIECKASGNPMPEIIWIRSDGT-------A 80

Query: 243 IDPLSDKRFTLSGGNLIIN-----DPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGE 297
           +  +   R   S G L+       D RQ      Y C A N+FGSIIS  V +       
Sbjct: 81  VGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQY 140

Query: 298 FNLKRAPEIGNQNWGKAMFCDPPTNY--PGVNYYWARDYFPNFV---EEDKRVFVSYDGA 352
           +      E   +     + C  P+          W  D   N+    E D +  V   G 
Sbjct: 141 YEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGE 200

Query: 353 LYFSALEQIDA-GNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP 411
           L+   +   D   +Y C  + +++   R        V        +    +  K   +  
Sbjct: 201 LHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTY 260

Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAY------FENFNRILTIPNVKM----- 460
                + L C A GYPVP + W +      R          +  +  L I +  +     
Sbjct: 261 SGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGK 320

Query: 461 --------RG-------------PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSY 499
                    G                   P     D  +         +C   G P  + 
Sbjct: 321 YLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGR-----PAVFTCQYTGNPIKTV 375

Query: 500 EWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIIS- 558
            W K+                 K    S   L I    + ED+G Y C   N   S  + 
Sbjct: 376 SWMKD----------------GKAIGHSESVLRIESV-KKEDKGMYQCFVRNDRESAEAS 418

Query: 559 -----ESVQLAFGFIGEFNLKRAPEIGNQNWGKA--MFCDPPTNYPGVNYYWARDYFPNF 611
                            F  +          G +  + C      P     W  D     
Sbjct: 419 AELKLGGRFDPPVIRQAFQEETMEP------GPSVFLKC-VAGGNPTPEISWELDGKK-- 469

Query: 612 VEEDKRVFVSYD--------GALYFSALEQIDAGNYSC---NVQSKVSDTGRNGPFFPLK 660
           +  + R  V             L  +++   D G Y C   +       + +      L 
Sbjct: 470 IANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAK------LN 523

Query: 661 VFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE 720
           V+     +Q++          +A  AG+ + + C   GYP+ S  W R    LP N   +
Sbjct: 524 VYGLPYIRQME---------KKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQK 574

Query: 721 NF-NRILTIPNV-KVEDQGEYICRASNDR-SALESSVTISIQAEPNF-TIPLTDKHMDNQ 776
            F N  L I NV +  DQ  Y C A N    +   S+ + +   P        +      
Sbjct: 575 VFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVG 634

Query: 777 ADLTWTCEAFGVP-DVTYSWFRNGE 800
             LT  C   G    +   W  +G+
Sbjct: 635 QYLTLHCSVPGGDLPLNIDWTLDGQ 659

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  283 bits (726), Expect = 1e-83
 Identities = 79/364 (21%), Positives = 129/364 (35%), Gaps = 28/364 (7%)

Query: 454 TIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVA 513
             P+   +GP F+K+PT+ +   +         + C A G P P   W + D        
Sbjct: 30  NPPDADQKGPVFLKEPTNRIDFSNS----TGAEIECKASGNPMPEIIWIRSDGT------ 79

Query: 514 NLIDPLSDKRFTLSGGNLIIN-----DPRQVEDRGSYHCKASNKFGSIISESVQLAFGFI 568
             +  +   R   S G L+       D RQ      Y C A N+FGSIIS  V +     
Sbjct: 80  -AVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVA 138

Query: 569 GEFNLKRAPEIGNQNWGKAMFCDPPTNY--PGVNYYWARDYFPNFV---EEDKRVFVSYD 623
             +      E   +     + C  P+          W  D   N+    E D +  V   
Sbjct: 139 QYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPS 198

Query: 624 GALYFSALEQIDA-GNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPE 682
           G L+   +   D   +Y C  + +++   R        V        +    +  K   +
Sbjct: 199 GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMK 258

Query: 683 APKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAY------FENFNRILTIPNVKVEDQ 736
                  + L C A GYPVP + W +      R          +  +  L I +  VED 
Sbjct: 259 TYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDS 318

Query: 737 GEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWF 796
           G+Y+C  +N          +++ A  +  I    + +D      +TC+  G P  T SW 
Sbjct: 319 GKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWM 378

Query: 797 RNGE 800
           ++G+
Sbjct: 379 KDGK 382

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  231 bits (590), Expect = 6e-65
 Identities = 114/685 (16%), Positives = 193/685 (28%), Gaps = 144/685 (21%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYA---GGYPNPSYEWFKEDYVQDRLVANLIDPL 246
            Y+                 N   + C              W  ++              
Sbjct: 139 QYYEADVNKEHVIRG-----NSAVIKCLIPSFVADFVEVVSWHTDE----EENYFPGAEY 189

Query: 247 SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEI 306
             K   L  G L I +    +   SY C+  ++       S       I E      P++
Sbjct: 190 DGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKV 249

Query: 307 GNQNWGKAMFCDPPTN-----------------YPGVNYYWARDYFPNFVEEDKRV---F 346
                   +                        YP   + W +       ++   +    
Sbjct: 250 --------VSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRV 301

Query: 347 VSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKT 406
               G L        D+G Y C V + V   G       L V               P +
Sbjct: 302 KQVSGTLIIKDAVVEDSGKYLCVVNNSV---GGESVETVLTV-------------TAPLS 345

Query: 407 FPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKM- 460
               P       G      C   G P+ + +W + G  +  +        +L I +VK  
Sbjct: 346 AKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS------ESVLRIESVKKE 399

Query: 461 -RG---------------------------PYFIKQPTDVVFDLSKRSILNDITLSCYAG 492
            +G                           P   +   +   +         + L C AG
Sbjct: 400 DKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPG-----PSVFLKCVAG 454

Query: 493 GYPNPSYEWFKEDY--VQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKAS 550
           G P P   W  +      +           +         L I       D G Y C A 
Sbjct: 455 GNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVV---SYLNITSV-HANDGGLYKCIAK 510

Query: 551 NKFGSIISESVQLAFGFIGEFNLKRAPEI-GNQNW----GKA--MFCDPPTNYPGVNYYW 603
           +K G     S +L        N+   P I   +      G+   + C P   YP  +  W
Sbjct: 511 SKVGVA-EHSAKL--------NVYGLPYIRQMEKKAIVAGETLIVTC-PVAGYPIDSIVW 560

Query: 604 ARDYFPNFVEEDKRVFVSYDGALYFSALEQI-DAGNYSCNVQSKVSDTGRNGPFFPLKVF 662
            RD     +  +++  V  +G L    +E+  D   Y+C  +++   + R      ++V 
Sbjct: 561 ERDNRA--LPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARG--SLEVQVM 616

Query: 663 PHSNFQQLKFPNNFPKTFPEAP-KAGDKVRLECVAFGYPVP-SYNWTRRGSPLPRN---- 716
                     P   P  F E P + G  + L C   G  +P + +WT  G  +  +    
Sbjct: 617 VL--------PRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGIT 668

Query: 717 -AYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDN 775
            +       +LTI  V+    G + C A N     + +  +++   P + +  TDK    
Sbjct: 669 TSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQ 728

Query: 776 QADLTWTCEAFGVPDVTYSWFRNGE 800
            +D    C+A G P    +W +   
Sbjct: 729 GSDAKVECKADGFPKPQVTWKKAVG 753

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  227 bits (579), Expect = 2e-63
 Identities = 135/636 (21%), Positives = 216/636 (33%), Gaps = 123/636 (19%)

Query: 190 PYFIKQPTDVVFDLSKRSIL---NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 246
           P     P  V             + + L C A GYP P + W+K     +         L
Sbjct: 241 PISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFI---EGTTRKQAVVL 297

Query: 247 SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKRA 303
           +D R     G LII D   VED G Y C  +N  G    E   +V        +      
Sbjct: 298 ND-RVKQVSGTLIIKDA-VVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKID------ 349

Query: 304 PEIGNQNWGK-AMF-CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQI 361
           P     ++G+ A+F C   T  P     W +D         K +  S +  L   ++++ 
Sbjct: 350 PPTQTVDFGRPAVFTCQY-TGNPIKTVSWMKD--------GKAIGHS-ESVLRIESVKKE 399

Query: 362 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP-KAGDKVRLE 420
           D G Y C V++             LK+    +      P    + F E   + G  V L+
Sbjct: 400 DKGMYQCFVRNDR---ESAEASAELKLGGRFD------PPVIRQAFQEETMEPGPSVFLK 450

Query: 421 CVAFGYPVPSYNWTRRGSPLPRNAYFE---------NFNRILTIPNVKM----------- 460
           CVA G P P  +W   G  +  N  ++         +    L I +V             
Sbjct: 451 CVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAK 510

Query: 461 --------------RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDY 506
                          G  +I+Q         +      + ++C   GYP  S  W +++ 
Sbjct: 511 SKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGE-----TLIVTCPVAGYPIDSIVWERDN- 564

Query: 507 VQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFG 566
                    + P++ K+     G LII +  +  D+ +Y C A N+ G     S+++   
Sbjct: 565 -------RAL-PINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVM 616

Query: 567 FIGEFNLKRAPEIGNQNWGKAMF-CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSY--- 622
            +         E   Q        C  P     +N  W  D     + ED  +  S    
Sbjct: 617 VLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQA--ISEDLGITTSRVGR 674

Query: 623 -DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFP 681
               L   A+E   AGN++C+ ++     G      PL V               P  + 
Sbjct: 675 RGSVLTIEAVEASHAGNFTCHARNLA---GHQQFTTPLNV-------------YVPPRWI 718

Query: 682 EAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-YFENFNRI------LTIP 729
             P       G   ++EC A G+P P   W +     P      +  + I      L + 
Sbjct: 719 LEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVD 778

Query: 730 NVKVEDQGEYICRASNDR-SALESSVTISIQAEPNF 764
           N++  ++G Y+C A N   S L + + IS+QA  + 
Sbjct: 779 NIQKTNEGYYLCEAINGIGSGLSAVIMISVQAHHHH 814

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  196 bits (500), Expect = 8e-53
 Identities = 109/611 (17%), Positives = 179/611 (29%), Gaps = 125/611 (20%)

Query: 265 QVEDRGSYHCKASNKFGSI-----ISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDP 319
           +++    +   A    GS        ++ Q    F+ E   +          G  + C  
Sbjct: 7   RLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNST---GAEIEC-K 62

Query: 320 PTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALE------QIDAGNYSCNVQSK 373
            +  P     W R       +      +S DG L F          ++ A  Y+C  +++
Sbjct: 63  ASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQ 122

Query: 374 VSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVA---FG 425
                             S    ++      + +           G+   ++C+      
Sbjct: 123 FGSI-------------ISRDVHVRAV--VAQYYEADVNKEHVIRGNSAVIKCLIPSFVA 167

Query: 426 YPVPSYNWTRRGSPLPRNAYFENFNRI-------LTIPNVKM------------------ 460
             V   +W              +  +        L I  V                    
Sbjct: 168 DFVEVVSWHTDEEENYFPGAEYD-GKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGE 226

Query: 461 ------------RGPYFIKQPTDVVFDLSKRSIL---NDITLSCYAGGYPNPSYEWFKED 505
                         P     P  V             + + L C A GYP P + W+K  
Sbjct: 227 TRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFI 286

Query: 506 YVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE---SVQ 562
              +         L+D R     G LII D   VED G Y C  +N  G    E   +V 
Sbjct: 287 ---EGTTRKQAVVLND-RVKQVSGTLIIKDA-VVEDSGKYLCVVNNSVGGESVETVLTVT 341

Query: 563 LAFGFIGEFNLKRAPEIGNQNWGK-AMF-CDPPTNYPGVNYYWARDYFPNFVEEDKRVFV 620
                  +      P     ++G+ A+F C   T  P     W +D         K +  
Sbjct: 342 APLSAKID------PPTQTVDFGRPAVFTCQY-TGNPIKTVSWMKD--------GKAIGH 386

Query: 621 SYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTF 680
           S +  L   ++++ D G Y C V++             LK+    +      P    + F
Sbjct: 387 S-ESVLRIESVKKEDKGMYQCFVRNDR---ESAEASAELKLGGRFD------PPVIRQAF 436

Query: 681 PEAP-KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE---------NFNRILTIPN 730
            E   + G  V L+CVA G P P  +W   G  +  N  ++         +    L I +
Sbjct: 437 QEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITS 496

Query: 731 VKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPD 790
           V   D G Y C A +     E S  +++   P          +  +  L  TC   G P 
Sbjct: 497 VHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGE-TLIVTCPVAGYPI 555

Query: 791 VTYSWFRNGEL 801
            +  W R+   
Sbjct: 556 DSIVWERDNRA 566

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 67.7 bits (165), Expect = 9e-12
 Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 3/77 (3%)

Query: 726 LTIPNVKVEDQGEYICRASND--RSALESSVTISIQAEPNFTI-PLTDKHMDNQADLTWT 782
           + +PN +++    +   A        L ++   + Q  P F   P       N       
Sbjct: 1   MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60

Query: 783 CEAFGVPDVTYSWFRNG 799
           C+A G P     W R+ 
Sbjct: 61  CKASGNPMPEIIWIRSD 77

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  309 bits (792), Expect = 5e-98
 Identities = 107/346 (30%), Positives = 172/346 (49%), Gaps = 23/346 (6%)

Query: 462 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 521
           GP F+++P+ V+F L        + LSC   G P P   W              +D   D
Sbjct: 5   GPVFVQEPSHVMFPLDSEE--KKVKLSCEVKGNPKPHIRWKLNG--------TDVDIGMD 54

Query: 522 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK-RAPEIG 580
            R+++  G+L+IN+P + +D G+Y C A+N FG+I+S   +L F ++  F  + R+    
Sbjct: 55  FRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSV 114

Query: 581 NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYS 640
            +  G  + C PP +   ++Y W  + +P++ ++++R      G LY + +E+ D GNY+
Sbjct: 115 RRGQGMVLLCGPPPHSGELSYAWIFNEYPSY-QDNRRFVSQETGNLYIAKVEKSDVGNYT 173

Query: 641 CNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECV 695
           C V + V++    GP  PL +       + +     PK   + P+      G  V+LEC 
Sbjct: 174 CVVTNTVTNHKVLGPPTPLILRNDGVMGEYE-----PKIEVQFPETVPAEKGTTVKLECF 228

Query: 696 AFGYPVPSYNWTRR-GSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSV 754
           A G PVP+  W R  G P+ R A     N IL IPN + ED G Y C A N R    +  
Sbjct: 229 ALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKG 288

Query: 755 TISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
            ++  A+PN+   + D H+  +  + W C+A G P  TY W +NG+
Sbjct: 289 QLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGD 334

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  287 bits (736), Expect = 8e-90
 Identities = 115/409 (28%), Positives = 180/409 (44%), Gaps = 68/409 (16%)

Query: 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
           GP F+++P+ V+F L        + LSC   G P P   W              +D   D
Sbjct: 5   GPVFVQEPSHVMFPLDSEE--KKVKLSCEVKGNPKPHIRWKLNG--------TDVDIGMD 54

Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK-RAPEIG 307
            R+++  G+L+IN+P + +D G+Y C A+N FG+I+S   +L F ++  F  + R+    
Sbjct: 55  FRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSV 114

Query: 308 NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYS 367
            +  G  + C PP +   ++Y W  + +P++ ++++R      G LY + +E+ D GNY+
Sbjct: 115 RRGQGMVLLCGPPPHSGELSYAWIFNEYPSY-QDNRRFVSQETGNLYIAKVEKSDVGNYT 173

Query: 368 CNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECV 422
           C V + V++    GP  PL +       + +     PK   + P+      G  V+LEC 
Sbjct: 174 CVVTNTVTNHKVLGPPTPLILRNDGVMGEYE-----PKIEVQFPETVPAEKGTTVKLECF 228

Query: 423 AFGYPVPSYNWTRR-GSPLPRNAYFENFNRILTIPNVKM-------------RG------ 462
           A G PVP+  W R  G P+ R A     N IL IPN +              RG      
Sbjct: 229 ALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKG 288

Query: 463 -------PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANL 515
                  P +++   D+   + +      +   C A G P P+Y W K            
Sbjct: 289 QLTFYAQPNWVQIINDIHVAMEE-----SVFWECKANGRPKPTYRWLKNG---------- 333

Query: 516 IDPL-SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
            DPL +  R  +  G L I     + D G Y C A NK G I S S +L
Sbjct: 334 -DPLLTRDRIQIEQGTLNITI-VNLSDAGMYQCVAENKHGVIFS-SAEL 379

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  156 bits (396), Expect = 7e-42
 Identities = 78/392 (19%), Positives = 115/392 (29%), Gaps = 74/392 (18%)

Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLP--RNAYFENFNRILTIPNVKM---RGPY---- 464
             KV+L C   G P P   W   G+ +    +  +   +  L I N       G Y    
Sbjct: 23  EKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIA 82

Query: 465 ---------------FIKQPTDVVFDLSKRSIL--NDITLSCYA-GGYPNPSYEWFKEDY 506
                          F           S  S+     + L C         SY W   +Y
Sbjct: 83  TNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEY 142

Query: 507 VQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFG 566
                        + +  +   GNL I    +  D G+Y C  +N   +           
Sbjct: 143 --------PSYQDNRRFVSQETGNLYIAKVEK-SDVGNYTCVVTNTVTNHKVLG------ 187

Query: 567 FIGEFNLKRAPEIGNQNWGKAMFCDPPTN-----------------YPGVNYYWARDYFP 609
                 L    +     +   +    P                    P     W R    
Sbjct: 188 --PPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRA--D 243

Query: 610 NFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQ 669
                 K      +G L     +Q DAG+Y C  ++     G+N     L  +   N+ Q
Sbjct: 244 GKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSR---GKNVAKGQLTFYAQPNWVQ 300

Query: 670 LKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIP 729
           +   N+            + V  EC A G P P+Y W + G PL      +     L I 
Sbjct: 301 I--IND--IHVAM----EESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNIT 352

Query: 730 NVKVEDQGEYICRASNDRSALESSVTISIQAE 761
            V + D G Y C A N    + SS  +S+ AE
Sbjct: 353 IVNLSDAGMYQCVAENKHGVIFSSAELSVIAE 384

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  301 bits (773), Expect = 3e-95
 Identities = 113/345 (32%), Positives = 158/345 (45%), Gaps = 21/345 (6%)

Query: 462 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 521
           GP F +QP   +F     S    +TL+C A   P  +Y W              +    D
Sbjct: 4   GPVFEEQPAHTLFPEG--SAEEKVTLTCRARANPPATYRWKMNG--------TELKMGPD 53

Query: 522 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK-RAPEIG 580
            R+ L  G+L+I++P + +D GSY C A+N  G+++S    L FGF+ EF+ + R P   
Sbjct: 54  SRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKI 113

Query: 581 NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSY-DGALYFSALEQIDAGNY 639
            + WG    C PP +YP ++Y W  + FPNF+  D R FVS   G LY +  E  D GNY
Sbjct: 114 TEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNY 173

Query: 640 SCNVQSKVSDTG--RNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA--GDKVRLECV 695
           SC   S +          F  L +      Q   +  +    FP    A  G  V LEC 
Sbjct: 174 SCFATSHIDFITKSVFSKFSQLSLAAEDARQ---YAPSIKAKFPADTYALTGQMVTLECF 230

Query: 696 AFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVT 755
           AFG PVP   W +          + +   +L I NV  ED+G Y C A N +        
Sbjct: 231 AFGNPVPQIKWRKLDGSQTSK--WLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGR 288

Query: 756 ISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
           I I A+P++   +TD   D  +DL W+C A G P     W R+G+
Sbjct: 289 IIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQ 333

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  279 bits (714), Expect = 1e-86
 Identities = 121/408 (29%), Positives = 171/408 (41%), Gaps = 66/408 (16%)

Query: 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
           GP F +QP   +F     S    +TL+C A   P  +Y W              +    D
Sbjct: 4   GPVFEEQPAHTLFPEG--SAEEKVTLTCRARANPPATYRWKMNG--------TELKMGPD 53

Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK-RAPEIG 307
            R+ L  G+L+I++P + +D GSY C A+N  G+++S    L FGF+ EF+ + R P   
Sbjct: 54  SRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKI 113

Query: 308 NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSY-DGALYFSALEQIDAGNY 366
            + WG    C PP +YP ++Y W  + FPNF+  D R FVS   G LY +  E  D GNY
Sbjct: 114 TEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNY 173

Query: 367 SCNVQSKVSDTG--RNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA--GDKVRLECV 422
           SC   S +          F  L +      Q   +  +    FP    A  G  V LEC 
Sbjct: 174 SCFATSHIDFITKSVFSKFSQLSLAAEDARQ---YAPSIKAKFPADTYALTGQMVTLECF 230

Query: 423 AFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKM-------------RG------- 462
           AFG PVP   W +          + +   +L I NV               +G       
Sbjct: 231 AFGNPVPQIKWRKLDGSQTSK--WLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGR 288

Query: 463 ------PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLI 516
                 P ++   TD   D+       D+  SC A G P P+  W ++            
Sbjct: 289 IIIHAQPDWLDVITDTEADIGS-----DLRWSCVASGKPRPAVRWLRDG----------- 332

Query: 517 DPL-SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
            PL S  R  +SGG L  +    +ED G Y C A NK G++ + S +L
Sbjct: 333 QPLASQNRIEVSGGELRFSKL-VLEDSGMYQCVAENKHGTVYA-SAEL 378

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  157 bits (398), Expect = 3e-42
 Identities = 81/402 (20%), Positives = 127/402 (31%), Gaps = 81/402 (20%)

Query: 406 TFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLP--RNAYFENFNRILTIPNVKMR-- 461
            FPE   A +KV L C A   P  +Y W   G+ L    ++ +      L I N      
Sbjct: 15  LFPEG-SAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKD 73

Query: 462 -GPY----------------FIKQPTDVVFDLSKRSIL-----NDITLSCYA-GGYPNPS 498
            G Y                 ++      F   +R  +       +  +C     YP  S
Sbjct: 74  AGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALS 133

Query: 499 YEWFKEDYVQDRLVANLIDPLSDKRFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSII 557
           Y W   ++           P   +RF   + GNL I       D G+Y C A++    I 
Sbjct: 134 YRWLLNEF-------PNFIPADGRRFVSQTTGNLYIAKTEA-SDLGNYSCFATSHIDFIT 185

Query: 558 SE--SVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTN-----------------YPG 598
               S         E   + AP I             P +                  P 
Sbjct: 186 KSVFSKFSQLSLAAEDARQYAPSI---------KAKFPADTYALTGQMVTLECFAFGNPV 236

Query: 599 VNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFP 658
               W +             ++S +  L+   ++  D G Y C  ++     GR+     
Sbjct: 237 PQIKWRKLD-----GSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIK---GRDTYQGR 288

Query: 659 LKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAY 718
           + +    ++  +    +           G  +R  CVA G P P+  W R G PL     
Sbjct: 289 IIIHAQPDWLDV--ITD--TEADI----GSDLRWSCVASGKPRPAVRWLRDGQPLASQNR 340

Query: 719 FENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQA 760
            E     L    + +ED G Y C A N    + +S  +++QA
Sbjct: 341 IEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA 382

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  288 bits (739), Expect = 5e-90
 Identities = 102/359 (28%), Positives = 154/359 (42%), Gaps = 27/359 (7%)

Query: 454 TIPNVKMRGPYFIKQP-TDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLV 512
           +I N   + P   KQ   D + D       ++I + C A G P PS+ W +         
Sbjct: 8   SIQNELTQPPTITKQSAKDHIVDPR-----DNILIECEAKGNPAPSFHWTRNS------- 55

Query: 513 ANLIDPLSDKRFTL--SGGNLII---NDPRQVEDRGSYHCKASNKFGSIISESVQLAFGF 567
               +   D R ++    G L+I   +  R  E  G Y C A NKFG+ +S  ++L    
Sbjct: 56  -RFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSK 114

Query: 568 IGEFNLKRAPEIGNQNWGKAMF--CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA 625
              +  K   +      G  +   C+PP   P    +W        + +DKRV   ++G 
Sbjct: 115 SPLWP-KENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEP-ITQDKRVSQGHNGD 172

Query: 626 LYFSALEQIDA-GNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP 684
           LYFS +   D   +YSCN +   + T +    F LKV       +      +P+    + 
Sbjct: 173 LYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQ 232

Query: 685 KA--GDKVRLECVAFGYPVPSYNWTRRGSPLPRN-AYFENFNRILTIPNVKVEDQGEYIC 741
               G  + LEC+A G P P   W ++G  LP + A FENFN+ L I NV  ED GEY C
Sbjct: 233 MVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFC 292

Query: 742 RASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
            ASN   ++  ++++ ++A P +     +  +    D    C A G P  T  W  NGE
Sbjct: 293 LASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGE 351

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  267 bits (684), Expect = 6e-82
 Identities = 102/416 (24%), Positives = 163/416 (39%), Gaps = 67/416 (16%)

Query: 186 IPRGPYFIKQP-TDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLID 244
           + + P   KQ   D + D       ++I + C A G P PS+ W +             +
Sbjct: 13  LTQPPTITKQSAKDHIVDPR-----DNILIECEAKGNPAPSFHWTRNS--------RFFN 59

Query: 245 PLSDKRFTL--SGGNLII---NDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFN 299
              D R ++    G L+I   +  R  E  G Y C A NKFG+ +S  ++L       + 
Sbjct: 60  IAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWP 119

Query: 300 LKRAPEIGNQNWGKAMF--CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSA 357
            K   +      G  +   C+PP   P    +W        + +DKRV   ++G LYFS 
Sbjct: 120 -KENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEP-ITQDKRVSQGHNGDLYFSN 177

Query: 358 LEQIDA-GNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA--G 414
           +   D   +YSCN +   + T +    F LKV       +      +P+    +     G
Sbjct: 178 VMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRG 237

Query: 415 DKVRLECVAFGYPVPSYNWTRRGSPLPRN-AYFENFNRILTIPNVKMR--G--------- 462
             + LEC+A G P P   W ++G  LP + A FENFN+ L I NV     G         
Sbjct: 238 MDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNK 297

Query: 463 ---------------PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYV 507
                          PY++ +P +++    +     D  L C A G P P+ +W      
Sbjct: 298 MGSIRHTISVRVKAAPYWLDEPKNLILAPGE-----DGRLVCRANGNPKPTVQWMVNG-- 350

Query: 508 QDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
                  L     +    ++G  +I  D  Q+  R  Y C  SN+ G +++ +  +
Sbjct: 351 -----EPLQSAPPNPNREVAGDTIIFRDT-QISSRAVYQCNTSNEHGYLLA-NAFV 399

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  153 bits (389), Expect = 9e-41
 Identities = 72/399 (18%), Positives = 121/399 (30%), Gaps = 81/399 (20%)

Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPL-----PRNAYFENFNRILTIPNVKMR------G 462
            D + +EC A G P PS++WTR          PR +     +  L I            G
Sbjct: 32  RDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRR-SGTLVIDFRSGGRPEEYEG 90

Query: 463 PY-------------------FIKQPTDVVFDLSKRSIL--NDITLSCYA-GGYPNPSYE 500
            Y                     K P     +L    +     +TL C    G P+P   
Sbjct: 91  EYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIF 150

Query: 501 WFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISES 560
           W                    +      G+L  ++    + +  Y C A   F   I + 
Sbjct: 151 WMSSS--------MEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQK 202

Query: 561 VQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTN-----------------YPGVNYYW 603
                       +     +  +           ++                  P  +  W
Sbjct: 203 NPF------TLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAW 256

Query: 604 ARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFP 663
            +      +  DK  F +++ AL  + + + D+G Y C   +K+   G       ++V  
Sbjct: 257 YKKGGD--LPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKM---GSIRHTISVRVKA 311

Query: 664 HSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPL---PRNAYFE 720
              +  L  P N           G+  RL C A G P P+  W   G PL   P N   E
Sbjct: 312 APYW--LDEPKN--LILAP----GEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNRE 363

Query: 721 NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 759
                +   + ++  +  Y C  SN+   L ++  +S+ 
Sbjct: 364 VAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVL 402

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  279 bits (715), Expect = 1e-86
 Identities = 80/358 (22%), Positives = 129/358 (36%), Gaps = 31/358 (8%)

Query: 461 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 520
           +GP F+K+PT+ +   +         + C A G P P   W + D          +  + 
Sbjct: 2   KGPVFLKEPTNRIDFSNS----TGAEIECKASGNPMPEIIWIRSD-------GTAVGDVP 50

Query: 521 DKRFTLSGGNLIIN-----DPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKR 575
             R   S G L+       D RQ      Y C A N+FGSIIS  V +       +    
Sbjct: 51  GLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADV 110

Query: 576 APEIGNQNWGKAMFCDPPTNY--PGVNYYWARDYFPNFV---EEDKRVFVSYDGALYFSA 630
             E   +     + C  P+          W  D   N+    E D +  V   G L+   
Sbjct: 111 NKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIRE 170

Query: 631 LEQIDA-GNYSCNVQSKVSDTGRNGPFFPLKVF-PHSNFQQLKFPNNFPKTFPEAPKAGD 688
           +   D   +Y C  + +++   R        V     +    + P    K  P       
Sbjct: 171 VGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQK--PLELMVAH 228

Query: 689 KVRLECVAFGYPVPSYNWTRRGSPLPR------NAYFENFNRILTIPNVKVEDQGEYICR 742
            + L C A G+P PS+ W +      R      N   +  +  L I +  VED G+Y+C 
Sbjct: 229 TISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCV 288

Query: 743 ASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
            +N          +++ A  +  I    + +D      +TC+  G P  T SW ++G+
Sbjct: 289 VNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGK 346

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  249 bits (638), Expect = 1e-75
 Identities = 83/420 (19%), Positives = 127/420 (30%), Gaps = 80/420 (19%)

Query: 188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 247
           +GP F+K+PT+ +   +         + C A G P P   W + D          +  + 
Sbjct: 2   KGPVFLKEPTNRIDFSNS----TGAEIECKASGNPMPEIIWIRSD-------GTAVGDVP 50

Query: 248 DKRFTLSGGNLIIN-----DPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKR 302
             R   S G L+       D RQ      Y C A N+FGSIIS  V +       +    
Sbjct: 51  GLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADV 110

Query: 303 APEIGNQNWGKAMFCDPPTNY--PGVNYYWARDYFPNFV---EEDKRVFVSYDGALYFSA 357
             E   +     + C  P+          W  D   N+    E D +  V   G L+   
Sbjct: 111 NKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIRE 170

Query: 358 LEQIDA-GNYSCNVQSKVSDTGRNGPFFPLKVF-PHSNFQQLKFPNNFPKTFPEAPKAGD 415
           +   D   +Y C  + +++   R        V     +    + P    K  P       
Sbjct: 171 VGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQK--PLELMVAH 228

Query: 416 KVRLECVAFGYPVPSYNWTRRGSPLPR------NAYFENFNRILTIPNVKM--------- 460
            + L C A G+P PS+ W +      R      N   +  +  L I +  +         
Sbjct: 229 TISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCV 288

Query: 461 ----RG-------------PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFK 503
                G                   P     D  +         +C   G P  +  W K
Sbjct: 289 VNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGR-----PAVFTCQYTGNPIKTVSWMK 343

Query: 504 EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
           +                 K    S   L I    + ED+G Y C   N   S  + S +L
Sbjct: 344 D----------------GKAIGHSESVLRIESV-KKEDKGMYQCFVRNDRESAEA-SAEL 385

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  140 bits (354), Expect = 3e-36
 Identities = 66/401 (16%), Positives = 109/401 (27%), Gaps = 80/401 (19%)

Query: 410 APKAGDKVRLECVAFGYPVPSYNWTRRG----SPLPRNAYFENFNRILTIPNVKMRG--- 462
                    +EC A G P+P   W R        +P      + +  L  P  +      
Sbjct: 15  DFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISS-DGKLVFPPFRAEDYRQ 73

Query: 463 ------------------------------PYFIKQPTDVVFDLSKRSILNDITLSCYAG 492
                                          Y+                 N   + C   
Sbjct: 74  EVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRG-----NSAVIKCLIP 128

Query: 493 GY---PNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKA 549
            +         W  ++                K   L  G L I +    +   SY C+ 
Sbjct: 129 SFVADFVEVVSWHTDEEENYFP----GAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRT 184

Query: 550 SNKFGSIISESVQLAFGFIGEFNLKRAPEI--GNQNWGKA-------MFCDPPTNYPGVN 600
            ++       S       I E     AP      Q   +        + C P   +P  +
Sbjct: 185 KHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLC-PAQGFPAPS 243

Query: 601 YYWARDYFPNFVEEDKRV---FVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFF 657
           + W +       ++   +        G L        D+G Y C V + V   G      
Sbjct: 244 FRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSV---GGESVET 300

Query: 658 PLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA 717
            L V    + +    P    +T       G      C   G P+ + +W + G  +  + 
Sbjct: 301 VLTVTAPLSAKID--PPT--QTVDF----GRPAVFTCQYTGNPIKTVSWMKDGKAIGHS- 351

Query: 718 YFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 758
                  +L I +VK ED+G Y C   NDR + E+S  + +
Sbjct: 352 -----ESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  284 bits (727), Expect = 3e-86
 Identities = 107/633 (16%), Positives = 183/633 (28%), Gaps = 132/633 (20%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           PYFI+    V   +        ITL C   G P     W+KE           +      
Sbjct: 6   PYFIEPLEHVEAAIG-----EPITLQCKVDGTPEIRIAWYKEH--------TKLRSAPAY 52

Query: 250 RFTLSG--GNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIG 307
           +        +L+IN      D G Y CKA N  G++ S +V +        +  R  +  
Sbjct: 53  KMQFKNNVASLVINKV-DHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDV 111

Query: 308 NQNWGKAMF--CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD-GALYFSALEQIDAG 364
           ++  G  +   C        +   W +D      + + +    ++   L     +Q   G
Sbjct: 112 HETLGFPVAFEC-RINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVG 170

Query: 365 NYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRL 419
            Y+C+  + +   G       L +  H            P  F   P       G+    
Sbjct: 171 QYNCSASNPL---GTASSSAKLTLSEH----------EVPPFFDLKPVSVDLALGESGTF 217

Query: 420 ECVAFGYPVPSYNWTRRGSPLPRN----AYFENFNRILTIPNVKM-------------RG 462
           +C   G       W +    +                LT+  V                G
Sbjct: 218 KCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAG 277

Query: 463 -------------PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQD 509
                        P FIK+                    C  GG P     W+K++    
Sbjct: 278 KDSCSAQLGVQEPPRFIKKLEPSRIVKQDE----HTRYECKIGGSPEIKVLWYKDE---- 329

Query: 510 RLVANLIDPLSDKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLA 564
                 I   S  R +       L + +   VED G Y C+A N  GS  S     V+  
Sbjct: 330 ----TEIQESSKFRMSFVESVAVLEMYNL-SVEDSGDYTCEAHNAAGSASSSTSLKVKEP 384

Query: 565 FGFIGEFNLKRAPEIGNQNWGKA--MFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSY 622
             F  + +     +      G    + C+     P     W +D     +   K+  +  
Sbjct: 385 PVFRKKPHPVETLK------GADVHLECE-LQGTPPFQVSWHKDKRE--LRSGKKYKIMS 435

Query: 623 DGA---LYFSALEQIDAGNYSC---NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNF 676
           +     ++   ++  D G Y C   N     +  G       + +               
Sbjct: 436 ENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGS------ITL-------------KA 476

Query: 677 PKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-----YFENFNRIL 726
           P  F +         G++V+L+    G    S  W +    + R +      +      L
Sbjct: 477 PPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATL 536

Query: 727 TIPNVKVEDQGEYICRASNDRSALESSVTISIQ 759
                +  + G+Y C+  N+    E   T+S+ 
Sbjct: 537 QFSRAEPANAGKYTCQIKNEAGTQECFATLSVL 569

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  200 bits (511), Expect = 1e-55
 Identities = 105/531 (19%), Positives = 169/531 (31%), Gaps = 99/531 (18%)

Query: 323 YPGVNYYWARDYFPNFVEEDKRVFVSYD---GALYFSALEQIDAGNYSCNVQSKVSDTGR 379
            P +   W +++    +       + +     +L  + ++  D G Y+C  ++ V     
Sbjct: 32  TPEIRIAWYKEHTK--LRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVAS 89

Query: 380 NGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWT 434
           +     L +               P +F    K      G  V  EC   G      +W 
Sbjct: 90  S---AVLVIKER----------KLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWY 136

Query: 435 RRGSPLPRNA----YFENFNRILTIPNVK-------------MRG--------------- 462
           + G  L  +A     F +    L I                   G               
Sbjct: 137 KDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEV 196

Query: 463 -PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 521
            P+F  +P  V   L +       T  C+  G       W K++          I P  +
Sbjct: 197 PPFFDLKPVSVDLALGE-----SGTFKCHVTGTAPIKITWAKDN--------REIRPGGN 243

Query: 522 KRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISESVQLAF----GFIGEFNLKR 575
            + TL      L +       D G Y C ASN  G   S S QL       FI +    R
Sbjct: 244 YKMTLVENTATLTVLKV-TKGDAGQYTCYASNVAGKD-SCSAQLGVQEPPRFIKKLEPSR 301

Query: 576 APEIGNQNWGKAMF-CDPPTNYPGVNYYWARDYFP-NFVEEDKRVFVSYDGALYFSALEQ 633
             +          + C      P +   W +D        + +  FV     L    L  
Sbjct: 302 IVKQD----EHTRYEC-KIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSV 356

Query: 634 IDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLE 693
            D+G+Y+C   +       +     LKV     F++   P+       +    G  V LE
Sbjct: 357 EDSGDYTCEAHNAAGSASSS---TSLKVKEPPVFRK--KPHP--VETLK----GADVHLE 405

Query: 694 CVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYICRASNDRSA 749
           C   G P    +W +    L     +    ENF   + I NV   D GEY C+ASND  +
Sbjct: 406 CELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGS 465

Query: 750 LESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
                +I+++A P F   L+D       ++       G   ++ +WF++  
Sbjct: 466 DTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKG 516

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  191 bits (487), Expect = 1e-52
 Identities = 87/454 (19%), Positives = 141/454 (31%), Gaps = 92/454 (20%)

Query: 404 PKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA----YFENFNRILT 454
           P  F E  +      G+ + L+C   G P     W +  + L         F+N    L 
Sbjct: 5   PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLV 64

Query: 455 IPNVKM--RGPY---------------------------FIKQPTDVVFDLSKRSILNDI 485
           I  V     G Y                           F ++  DV   L        +
Sbjct: 65  INKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGF-----PV 119

Query: 486 TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSG--GNLIINDPRQVEDRG 543
              C   G       W+K+          L+   ++ + +       L I    Q    G
Sbjct: 120 AFECRINGSEPLQVSWYKDG--------ELLKDDANLQTSFIHNVATLQILQTDQ-SHVG 170

Query: 544 SYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQ------NWGKA--MFCDPPTN 595
            Y+C ASN  G+  S S +L          +  P    +        G++    C   T 
Sbjct: 171 QYNCSASNPLGTASS-SAKLTLS-----EHEVPPFFDLKPVSVDLALGESGTFKC-HVTG 223

Query: 596 YPGVNYYWARDYFPNFVEEDKRVFVSYD---GALYFSALEQIDAGNYSCNVQSKVSDTGR 652
              +   WA+D     +       ++       L    + + DAG Y+C   +     G+
Sbjct: 224 TAPIKITWAKDNRE--IRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVA---GK 278

Query: 653 NGPFFPLKVF--PHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRG 710
           +     L V   P   F +               K  +  R EC   G P     W +  
Sbjct: 279 DSCSAQLGVQEPPR--FIK-------KLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDE 329

Query: 711 SPLPRNA----YFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTI 766
           + +  ++     F     +L + N+ VED G+Y C A N   +  SS ++ ++  P F  
Sbjct: 330 TEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRK 389

Query: 767 PLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
                     AD+   CE  G P    SW ++  
Sbjct: 390 KPHPVETLKGADVHLECELQGTPPFQVSWHKDKR 423

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  264 bits (675), Expect = 8e-81
 Identities = 67/358 (18%), Positives = 116/358 (32%), Gaps = 32/358 (8%)

Query: 461 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPL 519
           + P    QP +V+F  +     N   L C   G      Y W K+            +  
Sbjct: 5   KYPVLKDQPAEVLFREN-----NPTVLECIIEGNDQGVKYSWKKDG--------KSYNWQ 51

Query: 520 SDK-RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPE 578
                     G+L+   P+   D G Y C A    G   S  +     ++     K   +
Sbjct: 52  EHNAALRKDEGSLVFLRPQA-SDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEK 110

Query: 579 IGNQNWGKAMFCDPPTNYPGVNYYWARDYFP-----NFVEEDKRVFVSYDGALYFSALEQ 633
              +     + C  P  YP     W +         +  + D+R+    DG LYF+ + +
Sbjct: 111 TPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTK 170

Query: 634 IDA---GNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKV 690
            D      Y C  ++   D       + +K     N      P     +     KAGD  
Sbjct: 171 EDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVT 230

Query: 691 RLECVAFGYPVPSYNWTRRGSPLPRNA------YFENFNRILTIPNVKVEDQGEYICRAS 744
            + C+    P+   N+ + G  +  N       +     + L       ED+G Y C   
Sbjct: 231 MIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVD 290

Query: 745 NDR-SALESSVTISIQAEPNFTIPLTDK-HMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
           N      + S+ +++ + P +         +    D+T  C+  G+P     W  N +
Sbjct: 291 NGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAK 348

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  254 bits (651), Expect = 2e-77
 Identities = 77/422 (18%), Positives = 131/422 (31%), Gaps = 74/422 (17%)

Query: 185 KIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP-SYEWFKEDYVQDRLVANLI 243
            + + P    QP +V+F  +     N   L C   G      Y W K+            
Sbjct: 2   PVDKYPVLKDQPAEVLFREN-----NPTVLECIIEGNDQGVKYSWKKDG--------KSY 48

Query: 244 DPLSDK-RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKR 302
           +            G+L+   P+   D G Y C A    G   S  +     ++     K 
Sbjct: 49  NWQEHNAALRKDEGSLVFLRPQA-SDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKT 107

Query: 303 APEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFP-----NFVEEDKRVFVSYDGALYFSA 357
             +   +     + C  P  YP     W +         +  + D+R+    DG LYF+ 
Sbjct: 108 HEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTI 167

Query: 358 LEQIDA---GNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAG 414
           + + D      Y C  ++   D       + +K     N      P     +     KAG
Sbjct: 168 VTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAG 227

Query: 415 DKVRLECVAFGYPVPSYNWTRRGSPLPRNA------YFENFNRILTIPNVKM-------- 460
           D   + C+    P+   N+ + G  +  N       +     + L               
Sbjct: 228 DVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTC 287

Query: 461 -----RG--------------PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEW 501
                 G              P + ++P  V+     +    D+T+ C   G P P+  W
Sbjct: 288 EVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQ----DVTIPCKVTGLPAPNVVW 343

Query: 502 FKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESV 561
                           PLS  R T++   L+I    +  D+G Y C+A+N+ G       
Sbjct: 344 SHNA-----------KPLSGGRATVTDSGLVIKGV-KNGDKGYYGCRATNEHGDKYF-ET 390

Query: 562 QL 563
            +
Sbjct: 391 LV 392

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  151 bits (384), Expect = 4e-40
 Identities = 70/402 (17%), Positives = 107/402 (26%), Gaps = 81/402 (20%)

Query: 412 KAGDKVRLECVAFGYPVP-SYNWTRRGSPLP---RNAYFENFNRILTIPNVKM--RGPY- 464
           +  +   LEC+  G      Y+W + G        NA        L     +    G Y 
Sbjct: 19  RENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQ 78

Query: 465 ------------------------FIKQPTDVVFDLSKRSILNDITLSC-YAGGYPNPSY 499
                                      +  +               L C     YP P  
Sbjct: 79  CFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEG-----RPFQLDCVLPNAYPKPLI 133

Query: 500 EWFKEDYVQDRLVANLIDPLSDKRFT-LSGGNLIIND--PRQVEDRGSYHCKASNKFGSI 556
            W K          N      D+R T    GNL         V D   Y C A N     
Sbjct: 134 TWKKRLS---GADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDE 190

Query: 557 ISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTN-----------------YPGV 599
               V+          +K   +  +   G+ +      +                  P  
Sbjct: 191 EVVLVEY--------EIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMG 242

Query: 600 NYYWARDYFP---NFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPF 656
              + ++      N  +   R   +    L F      D G Y+C V + V    ++   
Sbjct: 243 YPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHS-- 300

Query: 657 FPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRN 716
             L V     ++Q       P+        G  V + C   G P P+  W+    PL   
Sbjct: 301 LKLTVVSAPKYEQK------PEKVIVVK-QGQDVTIPCKVTGLPAPNVVWSHNAKPLS-G 352

Query: 717 AYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 758
                 +  L I  VK  D+G Y CRA+N+         + +
Sbjct: 353 GRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  244 bits (624), Expect = 6e-71
 Identities = 102/581 (17%), Positives = 175/581 (30%), Gaps = 99/581 (17%)

Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269
           + +  +C        +Y W+  +          +      + +     L + +     D 
Sbjct: 127 DAVAFTCEPETQD-ATYLWWVNN--------QSLPVSPRLQLSNGNRTLTLFNV-TRNDT 176

Query: 270 GSYHCKASNKFGSIISESVQLAFGFIGEF-NLKRAPEIGNQNWGKAMFCDPPTNYPGVNY 328
            SY C+  N   +  S+SV L   +  +   +              + C   +N P   Y
Sbjct: 177 ASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASN-PPAQY 235

Query: 329 YWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKV 388
            W  +            F      L+   +   ++G+Y+C   +  +   R      + V
Sbjct: 236 SWFVN----------GTFQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVT-TITV 284

Query: 389 FPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLP--RNAYF 446
           +       +   N+ P          D V L C         Y W      LP       
Sbjct: 285 YAEPPKPFITSNNSNPVE------DEDAVALTCEPEIQNTT-YLWWVNNQSLPVSPRLQL 337

Query: 447 ENFNRILTIPNVKMR--GPY-------------------FIKQPTDVVFDLSKRSIL--N 483
            N NR LT+ +V     GPY                    +  P D     S        
Sbjct: 338 SNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGV 397

Query: 484 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 543
           +++LSC+A   P   Y W                   D         L I++    ++ G
Sbjct: 398 NLSLSCHAASNPPAQYSWLI-----------------DGNIQQHTQELFISNI-TEKNSG 439

Query: 544 SYHCKASNKFGSIISESVQLAFGFIGEF--NLKRAPEIGNQNWGKA--MFCDPPTNYPGV 599
            Y C+A+N      S +         E       +          A    C+P       
Sbjct: 440 LYTCQANNSASGH-SRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTY 498

Query: 600 NYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPL 659
            ++      P      +    + +  L    + + DA  Y C +Q+ VS   R+ P   L
Sbjct: 499 LWWVNGQSLPV---SPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVS-ANRSDPVT-L 553

Query: 660 KVFPHSNFQQLKFPNNFPKTFPEA-PKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAY 718
            V        L  P+    + P++   +G  + L C +   P P Y+W   G P      
Sbjct: 554 DV--------LYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQ----- 600

Query: 719 FENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 759
                ++L I  +   + G Y C  SN  +   +S+  SI 
Sbjct: 601 --QHTQVLFIAKITPNNNGTYACFVSNLATGRNNSIVKSIT 639

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  242 bits (620), Expect = 3e-70
 Identities = 118/650 (18%), Positives = 197/650 (30%), Gaps = 99/650 (15%)

Query: 210 NDITLSCYAGGYPNPSYEWFKED----------YVQDRLVANLIDPLSDKRFTLSGGNLI 259
            ++ L  +        Y W+K +          YV     A      S +       +L+
Sbjct: 15  KEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLL 74

Query: 260 INDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMF--C 317
           I +  Q  D G Y              + Q             +          A+   C
Sbjct: 75  IQNIIQ-NDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTC 133

Query: 318 DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA-LYFSALEQIDAGNYSCNVQSKVSD 376
           +P T      Y W  +     +    R+ +S     L    + + D  +Y C  Q+ VS 
Sbjct: 134 EPETQDA--TYLWWVNNQS--LPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVS- 188

Query: 377 TGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP--KAGDKVRLECVAFGYPVPSYNWT 434
             R      L V          +  + P   P     ++G+ + L C A   P   Y+W 
Sbjct: 189 -ARRSDSVILNV---------LYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWF 238

Query: 435 RRGSPLPRNAYFENFNRILTIPNVKM--RGPY--------------------FIKQPTDV 472
             G+            + L IPN+ +   G Y                       +P   
Sbjct: 239 VNGTFQQST-------QELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKP 291

Query: 473 VFDLSKRSIL---NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGG 529
               +  + +   + + L+C        +Y W+  +          +      + +    
Sbjct: 292 FITSNNSNPVEDEDAVALTCEPEIQN-TTYLWWVNN--------QSLPVSPRLQLSNDNR 342

Query: 530 NLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMF 589
            L +    +  D G Y C   N+     S+ V L     G  +   +P       G  + 
Sbjct: 343 TLTLLSVTR-NDVGPYECGIQNELSVDHSDPVILNV-LYGPDDPTISPSYTYYRPGVNLS 400

Query: 590 --CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 647
             C   +N P   Y W  D               +   L+ S + + ++G Y+C   +  
Sbjct: 401 LSCHAASN-PPAQYSWLID----------GNIQQHTQELFISNITEKNSGLYTCQANNSA 449

Query: 648 SDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWT 707
           S   R        +   +   +    +N  K   +     D V   C        +Y W 
Sbjct: 450 SGHSRTTV---KTITVSAELPKPSISSNNSKPVED----KDAVAFTCEPEAQN-TTYLWW 501

Query: 708 RRGSPLPRNA--YFENFNRILTIPNVKVEDQGEYICRASNDRSALES-SVTISIQAEPN- 763
             G  LP +      N NR LT+ NV   D   Y+C   N  SA  S  VT+ +   P+ 
Sbjct: 502 VNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDT 561

Query: 764 FTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELGHQMTDLLLKAV 813
             I   D    + A+L  +C +   P   YSW  NG        L +  +
Sbjct: 562 PIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHTQVLFIAKI 611

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  200 bits (510), Expect = 4e-55
 Identities = 72/437 (16%), Positives = 129/437 (29%), Gaps = 78/437 (17%)

Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA--------------------YFENFNRIL 453
           G +V L        +  Y+W +                                  N  L
Sbjct: 14  GKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASL 73

Query: 454 TIPNVKM--RGPY--------------------FIKQPTDVVFDLSKRSIL--NDITLSC 489
            I N+     G Y                    + + P   +   + + +   + +  +C
Sbjct: 74  LIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTC 133

Query: 490 YAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKA 549
                   +Y W+  +          +      + +     L + +     D  SY C+ 
Sbjct: 134 EPETQD-ATYLWWVNN--------QSLPVSPRLQLSNGNRTLTLFNV-TRNDTASYKCET 183

Query: 550 SNKFGSIISESVQLAFGFIGEF-NLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYF 608
            N   +  S+SV L   +  +   +              + C   +N P   Y W  +  
Sbjct: 184 QNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASN-PPAQYSWFVN-- 240

Query: 609 PNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQ 668
                     F      L+   +   ++G+Y+C   +  +   R      + V+      
Sbjct: 241 --------GTFQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVT-TITVYAEPPKP 291

Query: 669 QLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLP--RNAYFENFNRIL 726
            +   N+ P          D V L C         Y W      LP        N NR L
Sbjct: 292 FITSNNSNPVE------DEDAVALTCEPEIQNTT-YLWWVNNQSLPVSPRLQLSNDNRTL 344

Query: 727 TIPNVKVEDQGEYICRASNDRSALES-SVTISIQAEP-NFTIPLTDKHMDNQADLTWTCE 784
           T+ +V   D G Y C   N+ S   S  V +++   P + TI  +  +     +L+ +C 
Sbjct: 345 TLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCH 404

Query: 785 AFGVPDVTYSWFRNGEL 801
           A   P   YSW  +G +
Sbjct: 405 AASNPPAQYSWLIDGNI 421

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  208 bits (532), Expect = 3e-60
 Identities = 82/355 (23%), Positives = 132/355 (37%), Gaps = 38/355 (10%)

Query: 461 RGPYFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPL 519
           R  +F+ +P+D V          ++ L+C A      P  +W K+          ++   
Sbjct: 20  RSLHFVSEPSDAVTMRGG-----NVLLNCSAESDRGVPVIKWKKDG--------LILALG 66

Query: 520 SDKRFT-LSGGNLIINDPR----QVEDRGSYHCKAS-NKFGSIISESVQLAFGFIGEFNL 573
            D R   L  G+L+I +         D G Y C+AS    GSIIS + ++       F  
Sbjct: 67  MDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLS 126

Query: 574 KRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFP-NFVEEDKRVFVSYDGALYFSALE 632
           +             + C      P    +W ++    N +  D RV V   GAL  S L+
Sbjct: 127 QTESITAFMGDTVLLKC-EVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQ 185

Query: 633 QIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AG 687
             D+G Y C+ ++  S    N     +   P           +    F + P       G
Sbjct: 186 PGDSGVYRCSARNPASTRTGNEAEVRILSDP---------GLHRQLYFLQRPSNVIAIEG 236

Query: 688 DKVRLECVAFGYPVPSYNWTRRGSPLPRNA--YFENFNRILTIPNVKVEDQGEYICRASN 745
               LEC   GYP PS+ W R    +   +  Y       L I NV  +D G Y C  + 
Sbjct: 237 KDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTY 296

Query: 746 DRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
               + +S  +++   P F    ++ +     D+ + C   G P  T +W +NG+
Sbjct: 297 KNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGD 351

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  192 bits (490), Expect = 2e-54
 Identities = 97/419 (23%), Positives = 144/419 (34%), Gaps = 80/419 (19%)

Query: 186 IPRGPYFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLID 244
             R  +F+ +P+D V          ++ L+C A      P  +W K+          ++ 
Sbjct: 18  GRRSLHFVSEPSDAVTMRGG-----NVLLNCSAESDRGVPVIKWKKDG--------LILA 64

Query: 245 PLSDKRFT-LSGGNLIINDPR----QVEDRGSYHCKAS-NKFGSIISESVQLAFGFIGEF 298
              D R   L  G+L+I +         D G Y C+AS    GSIIS + ++       F
Sbjct: 65  LGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRF 124

Query: 299 NLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFP-NFVEEDKRVFVSYDGALYFSA 357
             +             + C      P    +W ++    N +  D RV V   GAL  S 
Sbjct: 125 LSQTESITAFMGDTVLLKC-EVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISR 183

Query: 358 LEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK----- 412
           L+  D+G Y C+ ++  S    N     +   P           +    F + P      
Sbjct: 184 LQPGDSGVYRCSARNPASTRTGNEAEVRILSDP---------GLHRQLYFLQRPSNVIAI 234

Query: 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA--YFENFNRILTIPNVK----------- 459
            G    LEC   GYP PS+ W R    +   +  Y       L I NV            
Sbjct: 235 EGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVV 294

Query: 460 --MRG-------------PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKE 504
                             P+F+  P+++    S      DI   C   G P P+  W K 
Sbjct: 295 TYKNENISASAELTVLVPPWFLNHPSNLYAYES-----MDIEFECAVSGKPVPTVNWMKN 349

Query: 505 DYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
                    +++ P SD    + G NL I       D G Y C A N+ G+  S S QL
Sbjct: 350 G--------DVVIP-SDYFQIVGGSNLRILGV-VKSDEGFYQCVAENEAGNAQS-SAQL 397

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  168 bits (427), Expect = 7e-46
 Identities = 83/416 (19%), Positives = 120/416 (28%), Gaps = 98/416 (23%)

Query: 406 TFPEAPK-----AGDKVRLECVAFG-YPVPSYNWTRRGSPLPRNA---YFENFNRILTIP 456
            F   P       G  V L C A     VP   W + G  L         +  N  L I 
Sbjct: 23  HFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQ 82

Query: 457 NVKMRG---------------------------------PYFIKQPTDVVFDLSKRSILN 483
           N+                                       F+ Q   +   +       
Sbjct: 83  NILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGD----- 137

Query: 484 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFT-LSGGNLIINDPRQVEDR 542
            + L C   G P P+  W K          +L     D R   L  G L I+  +   D 
Sbjct: 138 TVLLKCEVIGDPMPTIHWQKNQ-------QDLNPIPGDSRVVVLPSGALQISRLQP-GDS 189

Query: 543 GSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNY------ 596
           G Y C A N   +      ++         +   P +      +  F   P+N       
Sbjct: 190 GVYRCSARNPASTRTGNEAEV--------RILSDPGLHR----QLYFLQRPSNVIAIEGK 237

Query: 597 -----------PGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQS 645
                      P  ++ W R          K+  +     L  S +   D+G Y+C V  
Sbjct: 238 DAVLECCVSGYPPPSFTWLRGEEV-IQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTY 296

Query: 646 KVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYN 705
           K            L V     F  L  P+N      E       +  EC   G PVP+ N
Sbjct: 297 KN---ENISASAELTVLVPPWF--LNHPSN--LYAYE----SMDIEFECAVSGKPVPTVN 345

Query: 706 WTRRGSPLPRNAYFE-NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQA 760
           W + G  +  + YF+      L I  V   D+G Y C A N+    +SS  + +  
Sbjct: 346 WMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPK 401

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 7/60 (11%), Positives = 17/60 (28%), Gaps = 1/60 (1%)

Query: 742 RASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGV-PDVTYSWFRNGE 800
           R  ++  +         +   +F    +D       ++   C A          W ++G 
Sbjct: 2   RWGSELESSHHHHHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGL 61

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  211 bits (539), Expect = 3e-58
 Identities = 101/727 (13%), Positives = 173/727 (23%), Gaps = 163/727 (22%)

Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 246
              P    Q   +    +       + ++C   G  +  + W       ++ V       
Sbjct: 29  LDLPRLSIQKDILTIKAN-----TTLQITCR--GQRDLDWLWPNNQSGSEQRVEVTECSD 81

Query: 247 SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFG--SIISESVQLAFGFIGEFNLKRAP 304
                TL      I       D G+Y C          I          FI   + +   
Sbjct: 82  GLFCKTL-----TIPKV-IGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGV 135

Query: 305 EIGNQNWGKAMF--CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQID 362
               +N  K +   C    +   V+    R     FV +  R+           +     
Sbjct: 136 VYITENKNKTVVIPCLGSISNLNVSLCA-RYPEKRFVPDGNRISWDSKKGFTIPSYMISY 194

Query: 363 AGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKV 417
           AG   C  +               + +    +  +                     G+K+
Sbjct: 195 AGMVFCEAKIND------------ESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKL 242

Query: 418 RLECVAFGYPVPSYNWT--------------RRGSPLPRNAYFENFNRILTIPNVKMR-- 461
            L C A        ++                R       +  + F   LTI  V     
Sbjct: 243 VLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQ 302

Query: 462 GPYF-----------------IKQPTDVVFDLSKRSIL-----NDITLSCYAGGYPNPSY 499
           G Y                  + +   V F     S++       + +     GYP P  
Sbjct: 303 GLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEI 362

Query: 500 EWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIIS- 558
           +W+K              PL       +G  L I +  +  D G+Y    +N        
Sbjct: 363 KWYKNGI-----------PLESNHTIKAGHVLTIMEVSE-RDTGNYTVILTNPISKEKQS 410

Query: 559 ----------------------------ESVQL---AFGF--IGEFNLKRAPEIGNQNWG 585
                                        +  L    +        +     E    N  
Sbjct: 411 HVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEP 470

Query: 586 KAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA----LYFSALEQIDAGNYSC 641
                                   N +E +K  F   +G               +  Y C
Sbjct: 471 SQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKC 530

Query: 642 NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPV 701
              +KV   GR        V                      P   + V L C A     
Sbjct: 531 EAVNKV---GRGERVISFHV---------TRGPEITLQPDMQPTEQESVSLWCTADRSTF 578

Query: 702 PSYNWTRRGSPLP------------------------RNAYFENFNRILTIPNVKVEDQG 737
            +  W + G                              +   N   I+ + N  ++DQG
Sbjct: 579 ENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQG 638

Query: 738 EYICRASN----DRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTY 793
           +Y+C A +     R  +   +T+  +  P  T  L ++       +  +C A G P    
Sbjct: 639 DYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQI 698

Query: 794 SWFRNGE 800
            WF++ E
Sbjct: 699 MWFKDNE 705

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  188 bits (477), Expect = 5e-50
 Identities = 102/696 (14%), Positives = 182/696 (26%), Gaps = 149/696 (21%)

Query: 185 KIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLID 244
           +  R P+               +    + + C             +              
Sbjct: 119 QDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYP--------EKRF 170

Query: 245 PLSDKRFTL-SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRA 303
                R +  S     I     +   G   C+A     S  S    +       +++  +
Sbjct: 171 VPDGNRISWDSKKGFTIPSY-MISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLS 229

Query: 304 PE------IGNQNWGKAMF-CDPPTN-YPGVNYYWARDYFP---------NFVEEDKRVF 346
           P       +G     K +  C   T    G+++ W               +   +     
Sbjct: 230 PSHGIELSVGE----KLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEM 285

Query: 347 VSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKT 406
             +   L    + + D G Y+C   S +           ++V       +  F       
Sbjct: 286 KKFLSTLTIDGVTRSDQGLYTCAASSGL---MTKKNSTFVRV------HEKPFVAFGSGM 336

Query: 407 FPEA-PKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMR--G- 462
                   G++VR+     GYP P   W + G PL  N   +    +LTI  V  R  G 
Sbjct: 337 ESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKA-GHVLTIMEVSERDTGN 395

Query: 463 -------------------------PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP 497
                                    P   ++      D  +       TL+C     P P
Sbjct: 396 YTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYG--TTQTLTCTVYAIPPP 453

Query: 498 -SYEWFKED------------------------YVQDRLVANLIDPLSDKRFTLSGGNLI 532
               W+ +                          V+D    N I+   ++   + G N  
Sbjct: 454 HHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKT 513

Query: 533 IN--DPRQVEDRGSYHCKASNKFGS---------------IISESVQLAFG----FIGEF 571
           ++    +       Y C+A NK G                 +   +Q             
Sbjct: 514 VSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSLWCTA 573

Query: 572 NLKRAPEI-----GNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGAL 626
           +      +     G Q     +   P      ++  W  +        +          +
Sbjct: 574 DRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTN------DILIM 627

Query: 627 YFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK- 685
                   D G+Y C  Q + +               H   +QL        T     + 
Sbjct: 628 ELKNASLQDQGDYVCLAQDRKTKKR------------HCVVRQLTVLERVAPTITGNLEN 675

Query: 686 ----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA--YFENFNRILTIPNVKVEDQGEY 739
                G+ + + C A G P P   W +    L  ++    ++ NR LTI  V+ ED+G Y
Sbjct: 676 QTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLY 735

Query: 740 ICRASNDRSALESSVTISIQAEPNFT-IPLTDKHMD 774
            C+A +     +      I+     T +  T  H  
Sbjct: 736 TCQACSVLGCAKVEAFFIIEGAQEKTNLERTHHHHH 771

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  151 bits (382), Expect = 4e-38
 Identities = 71/496 (14%), Positives = 125/496 (25%), Gaps = 97/496 (19%)

Query: 362 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC 421
               + C      S    +      ++    +   +K              A   +++ C
Sbjct: 8   AVALWLCVETRAASVGLPSVSLDLPRLSIQKDILTIK--------------ANTTLQITC 53

Query: 422 VAFGYPVPSYNWTRRGSPLPRNAYFE-----NFNRILTIPNVKM---------------- 460
              G     + W    S   +           F + LTIP V                  
Sbjct: 54  R--GQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLA 111

Query: 461 ----------RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDR 510
                     R P+               +    + + C             +       
Sbjct: 112 SVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYP----- 166

Query: 511 LVANLIDPLSDKRFTL-SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIG 569
                       R +  S     I     +   G   C+A     S  S    +      
Sbjct: 167 ---EKRFVPDGNRISWDSKKGFTIPSY-MISYAGMVFCEAKINDESYQSIMYIVVVVGYR 222

Query: 570 EFNLKRAPE------IGNQNWGKAMF-CDPPTN-YPGVNYYWARDYFP---------NFV 612
            +++  +P       +G     K +  C   T    G+++ W               +  
Sbjct: 223 IYDVVLSPSHGIELSVGE----KLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLK 278

Query: 613 EEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKF 672
            +       +   L    + + D G Y+C   S +           ++V       +  F
Sbjct: 279 TQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL---MTKKNSTFVRV------HEKPF 329

Query: 673 PNNFPKTFPEA-PKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNV 731
                          G++VR+     GYP P   W + G PL  N   +    +LTI  V
Sbjct: 330 VAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKA-GHVLTIMEV 388

Query: 732 KVEDQGEYICRASNDRSALESSVTISIQA------EPNFTIPLTDKHMDNQADLTWTCEA 785
              D G Y    +N  S  + S  +S+             I   D +       T TC  
Sbjct: 389 SERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGT-TQTLTCTV 447

Query: 786 FGVPD-VTYSWFRNGE 800
           + +P      W+   E
Sbjct: 448 YAIPPPHHIHWYWQLE 463

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  142 bits (360), Expect = 3e-35
 Identities = 54/374 (14%), Positives = 99/374 (26%), Gaps = 52/374 (13%)

Query: 454 TIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVA 513
            +P+V +  P    Q   +    +       + ++C   G  +  + W       ++ V 
Sbjct: 23  GLPSVSLDLPRLSIQKDILTIKAN-----TTLQITCR--GQRDLDWLWPNNQSGSEQRVE 75

Query: 514 NLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFG--SIISESVQLAFGFIGEF 571
                      TL      I       D G+Y C          I          FI   
Sbjct: 76  VTECSDGLFCKTL-----TIPKV-IGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASV 129

Query: 572 NLKRAPEIGNQNWGKAMF--CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFS 629
           + +       +N  K +   C    +   V+    R     FV +  R+           
Sbjct: 130 SDQHGVVYITENKNKTVVIPCLGSISNLNVSLCA-RYPEKRFVPDGNRISWDSKKGFTIP 188

Query: 630 ALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK---- 685
           +     AG   C  +               + +    +  +                   
Sbjct: 189 SYMISYAGMVFCEAKIND------------ESYQSIMYIVVVVGYRIYDVVLSPSHGIEL 236

Query: 686 -AGDKVRLECVAFGYPVPSYNWT--------------RRGSPLPRNAYFENFNRILTIPN 730
             G+K+ L C A        ++                R       +  + F   LTI  
Sbjct: 237 SVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDG 296

Query: 731 VKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQA---DLTWTCEAFG 787
           V   DQG Y C AS+     ++S  + +  +P        + +        +    +  G
Sbjct: 297 VTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLG 356

Query: 788 VPDVTYSWFRNGEL 801
            P     W++NG  
Sbjct: 357 YPPPEIKWYKNGIP 370

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 68.6 bits (167), Expect = 5e-12
 Identities = 22/112 (19%), Positives = 35/112 (31%), Gaps = 17/112 (15%)

Query: 179 DIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRL 238
            +   +++   P       +    +        I +SC A G P P   WFK++      
Sbjct: 658 QLTVLERVA--PTITGNLENQTTSIG-----ESIEVSCTASGNPPPQIMWFKDN------ 704

Query: 239 VANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
               +   S         NL I    + ED G Y C+A +  G         
Sbjct: 705 --ETLVEDSGIVLKDGNRNLTIRRV-RKEDEGLYTCQACSVLGCAKV-EAFF 752

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  190 bits (483), Expect = 2e-52
 Identities = 65/481 (13%), Positives = 126/481 (26%), Gaps = 84/481 (17%)

Query: 362 DAGNYSCNVQS-KVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP----KAGDK 416
           D     C + + K +D+          V                 T  EA          
Sbjct: 6   DLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSAS 65

Query: 417 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNR---ILTIPNVKMR--GPY------- 464
           + L+ +       S  W  + S L    +F+  NR    + I  +     G Y       
Sbjct: 66  ITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSE 125

Query: 465 ----------FIKQPTDVVFDLSKRSILND-ITLSCYAGGYPNPSYEWFKEDYVQDRLVA 513
                      I+              + +   L C +   P P  EW   D        
Sbjct: 126 ATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCD-------- 177

Query: 514 NLIDPLSDKR-FTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFN 572
           +  +   ++    +     ++             C A N+ G   +    +        +
Sbjct: 178 SQGESCKEESPAVVKKEEKVL----HELFGTDIRCCARNELGRECTRLFTI--------D 225

Query: 573 LKRAPEIGNQNW----GKA--MFCDPPTNYPGVNYYWARD--------YFPNFVEEDKRV 618
           L + P+          G+   + C       G    W  +        YF        R 
Sbjct: 226 LNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRT 285

Query: 619 FVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPK 678
            +      + S++ + D G Y+C+     S +        + +             ++  
Sbjct: 286 MIR-ILFAFVSSVARNDTGYYTCSSSKHPSQSAL------VTIVEKGFINATNSSEDYEI 338

Query: 679 TFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGE 738
                    ++         YP     WT      P      +    ++         GE
Sbjct: 339 D------QYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGE 392

Query: 739 YICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRN 798
           YI  A ND +      T++I+ +P      +            +C + G P  +++W + 
Sbjct: 393 YIFHAENDDAQFTKMFTLNIRRKPQVLAEAS--------ASQASCFSDGYPLPSWTWKKC 444

Query: 799 G 799
            
Sbjct: 445 S 445

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  168 bits (426), Expect = 1e-44
 Identities = 67/555 (12%), Positives = 137/555 (24%), Gaps = 87/555 (15%)

Query: 257 NLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMF 316
           N   ND   V    SY   + +      +   Q + G + E                ++ 
Sbjct: 16  NHKNNDS-SVGKSSSYPMVSESPEDLGCALRPQSS-GTVYEAAAVEVDV------SASIT 67

Query: 317 --CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 374
                      ++  W   +     +    +      ++    + +  AG Y   +QS+ 
Sbjct: 68  LQV-LVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEA 126

Query: 375 SDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWT 434
                    F + +         +    +    P   K  ++  L C++   P P   W 
Sbjct: 127 ---TNYTILFTVSI---------RNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWV 174

Query: 435 RRGSPLPRNAYFENFNRILTIPNVK--MRGPY----------------FIKQPTDVVFDL 476
              S                   +                         I         L
Sbjct: 175 LCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTL 234

Query: 477 SKRSIL--NDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLII 533
            +  +     + + C A          W  E+   +      +   S  R  +      +
Sbjct: 235 PQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFV 294

Query: 534 NDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCD-P 592
           +   +  D G Y C +S         ++    GFI   N     EI   +  +       
Sbjct: 295 SSVAR-NDTGYYTCSSSKHPSQSALVTIV-EKGFINATNSSEDYEI---DQYEEFCFSVR 349

Query: 593 PTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGR 652
              YP +   W            ++  +    ++      +   G Y  + ++  +   +
Sbjct: 350 FKAYPQIRCTWTFS---RKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTK 406

Query: 653 NGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSP 712
               F L +                +  P+        +  C + GYP+PS+ W +    
Sbjct: 407 M---FTLNI----------------RRKPQVLAEASASQASCFSDGYPLPSWTWKKCSDK 447

Query: 713 LPR---------------NAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS 757
            P                   F  +    T+   +        C A N       ++ ++
Sbjct: 448 SPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLN 507

Query: 758 IQAEPNFTIPLTDKH 772
                 F      KH
Sbjct: 508 SPGPFPFIQDGGTKH 522

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  148 bits (375), Expect = 5e-38
 Identities = 51/358 (14%), Positives = 103/358 (28%), Gaps = 49/358 (13%)

Query: 457 NVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLI 516
            ++ +    + +   V  D+S       ITL        N S  W  +        ++L 
Sbjct: 43  ALRPQSSGTVYEAAAVEVDVSA-----SITLQVLVDAPGNISCLWVFKH-------SSLN 90

Query: 517 DPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRA 576
                        +++I         G Y     ++  +  +    ++      + L+R 
Sbjct: 91  CQPHFDLQNRGVVSMVILKM-TETQAGEYLLFIQSEATNY-TILFTVSIRNTLLYTLRR- 147

Query: 577 PEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDA 636
           P         A+ C   +  P     W          +++   V          L ++  
Sbjct: 148 PYFRKMENQDALVCISESV-PEPIVEWVLCDSQGESCKEESPAVVKKEEK---VLHELFG 203

Query: 637 GNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPE-APKAGDKVRLECV 695
            +  C  ++++   GR            +    +        T P+   K G+ + + C 
Sbjct: 204 TDIRCCARNEL---GRE----------CTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCK 250

Query: 696 AFGY-PVPSYNWTRRGSPLPRNAYFEN----------FNRILTIPNVKVEDQGEYICRAS 744
           A          W      L    YFE                 + +V   D G Y C +S
Sbjct: 251 AVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSS 310

Query: 745 NDRSALESSVTISIQAEP--NFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
              S    S  ++I  +   N T    D  +D   +  ++      P +  +W  + +
Sbjct: 311 KHPS---QSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRK 365

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  145 bits (368), Expect = 3e-37
 Identities = 71/509 (13%), Positives = 129/509 (25%), Gaps = 105/509 (20%)

Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 246
           P+    + +   V  D+S       ITL        N S  W  +        ++L    
Sbjct: 46  PQSSGTVYEAAAVEVDVSA-----SITLQVLVDAPGNISCLWVFKH-------SSLNCQP 93

Query: 247 SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEI 306
                     +++I         G Y     ++  +  +    ++      + L+R P  
Sbjct: 94  HFDLQNRGVVSMVILKM-TETQAGEYLLFIQSEATN-YTILFTVSIRNTLLYTLRR-PYF 150

Query: 307 GNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNY 366
                  A+ C   +  P     W          +++   V          L ++   + 
Sbjct: 151 RKMENQDALVCISESV-PEPIVEWVLCDSQGESCKEESPAVVKKEEK---VLHELFGTDI 206

Query: 367 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPE-APKAGDKVRLECVAFG 425
            C  ++++   GR            +    +        T P+   K G+ + + C A  
Sbjct: 207 RCCARNEL---GRE----------CTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVH 253

Query: 426 Y-PVPSYNWTRRGSPLPRNAYFEN----------FNRILTIPNVKMR--GPY-------- 464
                   W      L    YFE                 + +V     G Y        
Sbjct: 254 VNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHP 313

Query: 465 ------FIKQPTDVVFDLSKRSIL----NDITLSCYAGGYPNPSYEWFKEDYVQDRLVAN 514
                  I +   +    S          +   S     YP     W             
Sbjct: 314 SQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSR--------- 364

Query: 515 LIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK 574
                  ++  L  G  I          G Y   A N      ++   L        N++
Sbjct: 365 --KSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQ-FTKMFTL--------NIR 413

Query: 575 RAPEIGNQNWGKAMF--C----DPPTNYPGVNYYWARDYFPNFVEE----------DKRV 618
           R P++       A    C     P    P   +    D  PN  EE          +++V
Sbjct: 414 RKPQV--LAEASASQASCFSDGYPL---PSWTWKKCSDKSPNCTEEITEGVWNRKANRKV 468

Query: 619 FVSYDGALYFSALEQIDAGNYSCNVQSKV 647
           F  +  +   +  E I      C   + +
Sbjct: 469 FGQWVSSSTLNMSEAIKGFLVKCCAYNSL 497

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  102 bits (256), Expect = 5e-23
 Identities = 30/181 (16%), Positives = 53/181 (29%), Gaps = 9/181 (4%)

Query: 635 DAGNYSCNVQS-KVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP----KAGDK 689
           D     C + + K +D+          V                 T  EA          
Sbjct: 6   DLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSAS 65

Query: 690 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNR---ILTIPNVKVEDQGEYICRASND 746
           + L+ +       S  W  + S L    +F+  NR    + I  +     GEY+    ++
Sbjct: 66  ITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSE 125

Query: 747 RSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELGHQMT 806
            +      T+SI+    +T+           D    C +  VP+    W      G    
Sbjct: 126 ATNYTILFTVSIRNTLLYTLRRPYFRKMENQD-ALVCISESVPEPIVEWVLCDSQGESCK 184

Query: 807 D 807
           +
Sbjct: 185 E 185

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 58.6 bits (141), Expect = 5e-09
 Identities = 19/94 (20%), Positives = 31/94 (32%), Gaps = 9/94 (9%)

Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDP-----LSDKRFTLSGGNLIINDPR 264
           +    SC++ GYP PS+ W K           + +       + K F     +  +N   
Sbjct: 423 SASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNM-S 481

Query: 265 QVEDRGSYHCKASNKFGSIISE---SVQLAFGFI 295
           +        C A N  G+       +    F FI
Sbjct: 482 EAIKGFLVKCCAYNSLGTSCETILLNSPGPFPFI 515

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score =  177 bits (451), Expect = 1e-51
 Identities = 67/201 (33%), Positives = 95/201 (47%), Gaps = 6/201 (2%)

Query: 564 AFGFIGEFNLKRAPEI-GNQNWGKAMFCDPPTNYPG-VNYYWARDYFPNFVEEDKRVFVS 621
             G++  F  +  PE+   +  G  + CDPP ++P  ++Y W  + FP F+  DKR FVS
Sbjct: 3   GSGYLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVS 62

Query: 622 -YDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTF 680
             +G LY + +E  D GNYSC V S          F PL   P    +   +P +    F
Sbjct: 63  QTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKP--YPADIVVQF 120

Query: 681 PEA-PKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEY 739
            +     G  V LEC A G PVP   W +   P+P  A       +L I N+++ED+G Y
Sbjct: 121 KDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIY 180

Query: 740 ICRASNDRSALESSVTISIQA 760
            C A N R   +    I +QA
Sbjct: 181 ECEAENIRGKDKHQARIYVQA 201

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score =  143 bits (363), Expect = 2e-39
 Identities = 58/180 (32%), Positives = 83/180 (46%), Gaps = 8/180 (4%)

Query: 291 AFGFIGEFNLKRAPEI-GNQNWGKAMFCDPPTNYPG-VNYYWARDYFPNFVEEDKRVFVS 348
             G++  F  +  PE+   +  G  + CDPP ++P  ++Y W  + FP F+  DKR FVS
Sbjct: 3   GSGYLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVS 62

Query: 349 -YDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTF 407
             +G LY + +E  D GNYSC V S          F PL   P    +   +P +    F
Sbjct: 63  QTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKP--YPADIVVQF 120

Query: 408 PEA-PKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKM--RGPY 464
            +     G  V LEC A G PVP   W +   P+P  A       +L I N+++   G Y
Sbjct: 121 KDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIY 180

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 79.9 bits (197), Expect = 3e-17
 Identities = 29/142 (20%), Positives = 42/142 (29%), Gaps = 21/142 (14%)

Query: 680 FPEAP-----KAGDKVRLECVAFGYPVP--SYNWTRRGSPLPRNAYFENF----NRILTI 728
            PE       K G  + L C    +     SY W     P+        F    N  L I
Sbjct: 11  PPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYI 70

Query: 729 PNVKVEDQGEYICRASNDRSALESSVT----------ISIQAEPNFTIPLTDKHMDNQAD 778
            NV+  D+G Y C  S+                     +     +  +   D +     +
Sbjct: 71  ANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQN 130

Query: 779 LTWTCEAFGVPDVTYSWFRNGE 800
           +T  C A G P     W +  E
Sbjct: 131 VTLECFALGNPVPDIRWRKVLE 152

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 69.5 bits (170), Expect = 1e-13
 Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 19/105 (18%)

Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 246
           P     + Q  DV   + +     ++TL C+A G P P   W K             +P+
Sbjct: 111 PYPADIVVQFKDVYALMGQ-----NVTLECFALGNPVPDIRWRKVL-----------EPM 154

Query: 247 -SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
            S    + SG  L I +  Q+ED G Y C+A N  G       ++
Sbjct: 155 PSTAEISTSGAVLKIFNI-QLEDEGIYECEAENIRGK-DKHQARI 197

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 65.3 bits (159), Expect = 4e-12
 Identities = 32/205 (15%), Positives = 59/205 (28%), Gaps = 45/205 (21%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNP-SYEWFKEDYVQDRLVANLIDPLS 247
           P+  ++  +V            + L C     +P+  SY W   ++        +   + 
Sbjct: 9   PFPPEERPEVRVKEG-----KGMVLLCDPPYHFPDDLSYRWLLNEFP-------VFITMD 56

Query: 248 DKRFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEI 306
            +RF   + GNL I +     D+G+Y C  S+   +    S  +    I E   K  P  
Sbjct: 57  KRRFVSQTNGNLYIANVEA-SDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYP-- 113

Query: 307 GNQNWGKAMFCDPPTN-----------------YPGVNYYWARDYFPNFVEEDKRVFVSY 349
                  A       +                  P  +  W +               + 
Sbjct: 114 -------ADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKV---LEPMPSTAEISTS 163

Query: 350 DGALYFSALEQIDAGNYSCNVQSKV 374
              L    ++  D G Y C  ++  
Sbjct: 164 GAVLKIFNIQLEDEGIYECEAENIR 188

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 65.3 bits (159), Expect = 4e-12
 Identities = 32/205 (15%), Positives = 59/205 (28%), Gaps = 45/205 (21%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNP-SYEWFKEDYVQDRLVANLIDPLS 520
           P+  ++  +V            + L C     +P+  SY W   ++        +   + 
Sbjct: 9   PFPPEERPEVRVKEG-----KGMVLLCDPPYHFPDDLSYRWLLNEFP-------VFITMD 56

Query: 521 DKRFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEI 579
            +RF   + GNL I +     D+G+Y C  S+   +    S  +    I E   K  P  
Sbjct: 57  KRRFVSQTNGNLYIANVEA-SDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYP-- 113

Query: 580 GNQNWGKAMFCDPPTN-----------------YPGVNYYWARDYFPNFVEEDKRVFVSY 622
                  A       +                  P  +  W +               + 
Sbjct: 114 -------ADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKV---LEPMPSTAEISTS 163

Query: 623 DGALYFSALEQIDAGNYSCNVQSKV 647
              L    ++  D G Y C  ++  
Sbjct: 164 GAVLKIFNIQLEDEGIYECEAENIR 188

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  175 bits (445), Expect = 4e-48
 Identities = 59/441 (13%), Positives = 112/441 (25%), Gaps = 70/441 (15%)

Query: 362 DAGNYSCNVQS-KVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP----KAGDK 416
           D     C + + K +D+          V                 T  EA          
Sbjct: 6   DLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSAS 65

Query: 417 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNR---ILTIPNVKMR--GPY------- 464
           + L+ +       S  W  + S L    +F+  NR    + I  +     G Y       
Sbjct: 66  ITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSE 125

Query: 465 ----------FIKQPTDVVFDLSKRSILND-ITLSCYAGGYPNPSYEWFKEDYVQDRLVA 513
                      I+              + +   L C +   P P  EW   D       +
Sbjct: 126 ATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCD-------S 178

Query: 514 NLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE--SVQLAFGFIGEF 571
                  +    +     ++++           C A N+ G   +   ++ L        
Sbjct: 179 QGESCKEESPAVVKKEEKVLHE----LFGTDIRCCARNELGRECTRLFTIDLNQTPQTTL 234

Query: 572 NLKRAPEIGNQNWGKAMF--CDPPTNYPGVNYYWARD--------YFPNFVEEDKRVFVS 621
                        G+ ++  C       G    W  +        YF        R  + 
Sbjct: 235 PQLFLKV------GEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIR 288

Query: 622 YDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFP 681
                + S++ + D G Y+C+     S +        + +             ++     
Sbjct: 289 -ILFAFVSSVARNDTGYYTCSSSKHPSQSAL------VTIVEKGFINATNSSEDYEI--- 338

Query: 682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYIC 741
                 ++         YP     WT      P      +    ++         GEYI 
Sbjct: 339 ---DQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIF 395

Query: 742 RASNDRSALESSVTISIQAEP 762
            A ND +      T++I++  
Sbjct: 396 HAENDDAQFTKMFTLNIRSGT 416

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  148 bits (374), Expect = 1e-38
 Identities = 46/368 (12%), Positives = 97/368 (26%), Gaps = 55/368 (14%)

Query: 450 NRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQD 509
           +       ++ +    + +   V  D+S       ITL        N S  W  +     
Sbjct: 36  SPEDLGCALRPQSSGTVYEAAAVEVDVSA-----SITLQVLVDAPGNISCLWVFKH---- 86

Query: 510 RLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFG 566
              ++L              +++I         G Y     ++  +       S++    
Sbjct: 87  ---SSLNCQPHFDLQNRGVVSMVILKM-TETQAGEYLLFIQSEATNYTILFTVSIRNTLL 142

Query: 567 FIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGAL 626
           +       R  E       +        + P     W          +++   V      
Sbjct: 143 YTLRRPYFRKME------NQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEK 196

Query: 627 YFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPE-APK 685
                 ++   +  C  ++++   GR            +    +        T P+   K
Sbjct: 197 VLH---ELFGTDIRCCARNEL---GRE----------CTRLFTIDLNQTPQTTLPQLFLK 240

Query: 686 AGDKVRLECVA-FGYPVPSYNWTRRGSPLPRNAYFENF----------NRILTIPNVKVE 734
            G+ + + C A          W      L    YFE                 + +V   
Sbjct: 241 VGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARN 300

Query: 735 DQGEYICRASNDRSALESSVTISIQAEPNFTIPL--TDKHMDNQADLTWTCEAFGVPDVT 792
           D G Y C +S   S    S  ++I  +          D  +D   +  ++      P + 
Sbjct: 301 DTGYYTCSSSKHPS---QSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIR 357

Query: 793 YSWFRNGE 800
            +W  + +
Sbjct: 358 CTWTFSRK 365

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  144 bits (365), Expect = 2e-37
 Identities = 49/412 (11%), Positives = 97/412 (23%), Gaps = 82/412 (19%)

Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 246
           P+    + +   V  D+S       ITL        N S  W  +        ++L    
Sbjct: 46  PQSSGTVYEAAAVEVDVSA-----SITLQVLVDAPGNISCLWVFKH-------SSLNCQP 93

Query: 247 SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKRA 303
                     +++I         G Y     ++  +       S++    +       R 
Sbjct: 94  HFDLQNRGVVSMVILKM-TETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRK 152

Query: 304 PEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDA 363
            E       +        + P     W          +++   V            ++  
Sbjct: 153 ME------NQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLH---ELFG 203

Query: 364 GNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPE-APKAGDKVRLECV 422
            +  C  ++++   GR            +    +        T P+   K G+ + + C 
Sbjct: 204 TDIRCCARNEL---GRE----------CTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCK 250

Query: 423 A-FGYPVPSYNWTRRGSPLPRNAYFENF----------NRILTIPNVKM--RGPY----- 464
           A          W      L    YFE                 + +V     G Y     
Sbjct: 251 AVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSS 310

Query: 465 ---------FIKQPTDVVFDLSKRSIL----NDITLSCYAGGYPNPSYEWFKEDYVQDRL 511
                     I +   +    S          +   S     YP     W          
Sbjct: 311 KHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSR------ 364

Query: 512 VANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
                    +++   +G ++      +    G Y   A N      ++   L
Sbjct: 365 ----KSFPCEQKGLDNGYSISKFCNHK-HQPGEYIFHAENDDAQ-FTKMFTL 410

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  125 bits (315), Expect = 5e-31
 Identities = 43/420 (10%), Positives = 100/420 (23%), Gaps = 63/420 (15%)

Query: 257 NLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMF 316
           N   ND   V    SY   + +      +   Q + G + E                ++ 
Sbjct: 16  NHKNND-SSVGKSSSYPMVSESPEDLGCALRPQSS-GTVYEAAAVEVDV------SASIT 67

Query: 317 --CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 374
                      ++  W   +     +    +      ++    + +  AG Y   +QS+ 
Sbjct: 68  LQV-LVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEA 126

Query: 375 SDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWT 434
                    F + +         +    +    P   K  ++  L C++   P P   W 
Sbjct: 127 ---TNYTILFTVSI---------RNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWV 174

Query: 435 RRGSPLP---RNAYFENFNRILTIPNVK----------------------MRGPYFIKQP 469
              S        +          +  +                                 
Sbjct: 175 LCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTL 234

Query: 470 TDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSG 528
             +   + +      + + C A          W  E+   +      +   S  R  +  
Sbjct: 235 PQLFLKVGEP-----LWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRI 289

Query: 529 GNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAM 588
               ++   +  D G Y C +S         ++       G  N   + E    +  +  
Sbjct: 290 LFAFVSSVAR-NDTGYYTCSSSKHPSQSALVTIVEK----GFINATNSSEDYEIDQYEEF 344

Query: 589 FCD-PPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 647
                   YP +   W            ++  +    ++      +   G Y  + ++  
Sbjct: 345 CFSVRFKAYPQIRCTWTFS---RKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDD 401

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  113 bits (284), Expect = 5e-27
 Identities = 34/274 (12%), Positives = 69/274 (25%), Gaps = 25/274 (9%)

Query: 530 NLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMF 589
           N   ND   V    SY   + +      +   Q + G + E                ++ 
Sbjct: 16  NHKNND-SSVGKSSSYPMVSESPEDLGCALRPQSS-GTVYEAAAVEVDV------SASIT 67

Query: 590 --CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 647
                      ++  W   +     +    +      ++    + +  AG Y   +QS+ 
Sbjct: 68  LQV-LVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEA 126

Query: 648 SDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWT 707
                    F + +         +    +    P   K  ++  L C++   P P   W 
Sbjct: 127 ---TNYTILFTVSI---------RNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWV 174

Query: 708 RRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIP 767
              S                   +      +  C A N+    E +   +I         
Sbjct: 175 LCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNEL-GRECTRLFTIDLNQTPQTT 233

Query: 768 LTDKHMDNQADLTWTCEA-FGVPDVTYSWFRNGE 800
           L    +     L   C+A         +W    +
Sbjct: 234 LPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENK 267

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  111 bits (279), Expect = 3e-26
 Identities = 30/181 (16%), Positives = 53/181 (29%), Gaps = 9/181 (4%)

Query: 635 DAGNYSCNVQS-KVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP----KAGDK 689
           D     C + + K +D+          V                 T  EA          
Sbjct: 6   DLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSAS 65

Query: 690 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNR---ILTIPNVKVEDQGEYICRASND 746
           + L+ +       S  W  + S L    +F+  NR    + I  +     GEY+    ++
Sbjct: 66  ITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSE 125

Query: 747 RSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELGHQMT 806
            +      T+SI+    +T+           D    C +  VP+    W      G    
Sbjct: 126 ATNYTILFTVSIRNTLLYTLRRPYFRKMENQD-ALVCISESVPEPIVEWVLCDSQGESCK 184

Query: 807 D 807
           +
Sbjct: 185 E 185

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  154 bits (392), Expect = 4e-42
 Identities = 65/325 (20%), Positives = 102/325 (31%), Gaps = 43/325 (13%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
           P FIK+P D +            +  C A G P P   W K+           ++    +
Sbjct: 7   PRFIKEPKDQIGVSGG-----VASFVCQATGDPKPRVTWNKKG--------KKVNSQRFE 53

Query: 523 RFTL---SGGNLIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEF-NLKR 575
                  +G  L I   R   D   Y C A N  G I      +V         F N+  
Sbjct: 54  TIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDM 113

Query: 576 APEIGNQNWGKA--MFCDPPTNYPGVNYYWARDYFP-NFVEEDKRVFVSYDGALYFSALE 632
            P++      +   M C   +  P     W +D+ P +    + R+     GAL   + E
Sbjct: 114 GPQLKVVERTRTATMLC-AASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSE 172

Query: 633 QIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AG 687
           + D G Y C   +       +     ++V                  F   P       G
Sbjct: 173 ETDQGKYECVATNSAGVRYSSPANLYVRVQN------------VAPRFSILPMSHEIMPG 220

Query: 688 DKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDR 747
             V + CVA G P+P   W +    L              +    V+D   Y C A +  
Sbjct: 221 GNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGR--NVLELTDVKDSANYTCVAMSSL 278

Query: 748 SALESSVTISIQAEPNFTIPLTDKH 772
             +E+   I++++ P         H
Sbjct: 279 GVIEAVAQITVKSLPKAGTKHHHHH 303

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  121 bits (306), Expect = 1e-30
 Identities = 60/290 (20%), Positives = 91/290 (31%), Gaps = 41/290 (14%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           P FIK+P D +            +  C A G P P   W K+           ++    +
Sbjct: 7   PRFIKEPKDQIGVSGG-----VASFVCQATGDPKPRVTWNKKG--------KKVNSQRFE 53

Query: 250 RFTL---SGGNLIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEF-NLKR 302
                  +G  L I   R   D   Y C A N  G I      +V         F N+  
Sbjct: 54  TIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDM 113

Query: 303 APEIGNQNWGKA--MFCDPPTNYPGVNYYWARDYFP-NFVEEDKRVFVSYDGALYFSALE 359
            P++      +   M C   +  P     W +D+ P +    + R+     GAL   + E
Sbjct: 114 GPQLKVVERTRTATMLC-AASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSE 172

Query: 360 QIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AG 414
           + D G Y C   +       +     ++V                  F   P       G
Sbjct: 173 ETDQGKYECVATNSAGVRYSSPANLYVRVQN------------VAPRFSILPMSHEIMPG 220

Query: 415 DKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPY 464
             V + CVA G P+P   W +    L           +L + +VK    Y
Sbjct: 221 GNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRNVLELTDVKDSANY 270

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  106 bits (265), Expect = 3e-25
 Identities = 41/200 (20%), Positives = 70/200 (35%), Gaps = 33/200 (16%)

Query: 635 DAGNYSC---NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----A 686
           D   Y C   N   +++   +      L V       + + P+ FP      P+      
Sbjct: 75  DENVYECVAQNSVGEITVHAK------LTVLR-----EDQLPSGFP-NIDMGPQLKVVER 122

Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI----LTIPNVKVEDQGEYICR 742
                + C A G P P   W +   P+  +A      ++    L I + +  DQG+Y C 
Sbjct: 123 TRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECV 182

Query: 743 ASNDRSALESS---VTISIQAE-PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRN 798
           A+N      SS   + + +Q   P F+I      +    ++  TC A G P     W + 
Sbjct: 183 ATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQG 242

Query: 799 GEL-----GHQMTDLLLKAV 813
            E         +   +L+  
Sbjct: 243 AEDLTPEDDMPVGRNVLELT 262

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  100 bits (250), Expect = 2e-23
 Identities = 28/127 (22%), Positives = 47/127 (37%), Gaps = 13/127 (10%)

Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLP-----RNAYFENFNRILTIPNVKV-EDQGEYI 740
           G      C A G P P   W ++G  +         + E+   +L I  ++   D+  Y 
Sbjct: 21  GGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYE 80

Query: 741 CRASNDRSALESSVTISIQAE-------PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTY 793
           C A N    +     +++  E       PN  +    K ++     T  C A G PD   
Sbjct: 81  CVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEI 140

Query: 794 SWFRNGE 800
           +WF++  
Sbjct: 141 TWFKDFL 147

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 98.0 bits (244), Expect = 2e-22
 Identities = 56/287 (19%), Positives = 83/287 (28%), Gaps = 82/287 (28%)

Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLP-----RNAYFENFNRILTIPNVKM-------- 460
           G      C A G P P   W ++G  +         + E+   +L I  ++         
Sbjct: 21  GGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYE 80

Query: 461 --------------------------RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGY 494
                                       P     P   V + ++       T+ C A G 
Sbjct: 81  CVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTR-----TATMLCAASGN 135

Query: 495 PNPSYEWFKEDYVQDRLVANLIDP-LSDKRFT-LSGGNLIINDPRQVEDRGSYHCKASNK 552
           P+P   WFK+           +DP  S+ R   L  G L I    +  D+G Y C A+N 
Sbjct: 136 PDPEITWFKDF--------LPVDPSASNGRIKQLRSGALQIESSEE-TDQGKYECVATNS 186

Query: 553 FGSIISESVQL-------AFGFIGEFNLKRAPEIGNQNWGKAMF-C----DPPTNYPGVN 600
            G   S    L       A  F            G    G     C     P    P V 
Sbjct: 187 AGVRYSSPANLYVRVQNVAPRFSILPMSHEIMP-G----GNVNITCVAVGSPM---PYVK 238

Query: 601 YYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 647
             W +      +  +  + V   G       +  D+ NY+C   S +
Sbjct: 239 --WMQGAED--LTPEDDMPV---GRNVLELTDVKDSANYTCVAMSSL 278

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 75.6 bits (186), Expect = 5e-15
 Identities = 45/208 (21%), Positives = 64/208 (30%), Gaps = 43/208 (20%)

Query: 181 ENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVA 240
                    P     P   V + ++       T+ C A G P+P   WFK+         
Sbjct: 100 REDQLPSGFPNIDMGPQLKVVERTR-----TATMLCAASGNPDPEITWFKDF-------- 146

Query: 241 NLIDP-LSDKRFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL-------A 291
             +DP  S+ R   L  G L I    +  D+G Y C A+N  G   S    L       A
Sbjct: 147 LPVDPSASNGRIKQLRSGALQIESSEE-TDQGKYECVATNSAGVRYSSPANLYVRVQNVA 205

Query: 292 FGFIGEFNLKRAPEIGNQNWGKAMF-C----DPPTNYPGVNYYWARDYFPNFVEEDKRVF 346
             F            G    G     C     P    P V   W +      +  +  + 
Sbjct: 206 PRFSILPMSHEIMP-G----GNVNITCVAVGSPM---PYVK--WMQGAED--LTPEDDMP 253

Query: 347 VSYDGALYFSALEQIDAGNYSCNVQSKV 374
           V   G       +  D+ NY+C   S +
Sbjct: 254 V---GRNVLELTDVKDSANYTCVAMSSL 278

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 58.7 bits (142), Expect = 2e-09
 Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 19/101 (18%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           P F   P              ++ ++C A G P P  +W +            + P  + 
Sbjct: 206 PRFSILPMSHE-----IMPGGNVNITCVAVGSPMPYVKWMQGA--------EDLTP--ED 250

Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
              +    L + D   V+D  +Y C A +  G  I    Q+
Sbjct: 251 DMPVGRNVLELTD---VKDSANYTCVAMSSLGV-IEAVAQI 287

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  143 bits (362), Expect = 3e-38
 Identities = 54/324 (16%), Positives = 96/324 (29%), Gaps = 62/324 (19%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
                  + V   + +         +C A G P  S +W+                 + +
Sbjct: 5   LQVTISLSKVELSVGE-----SKFFTCTAIGEP-ESIDWYNPQ--------GEKIISTQR 50

Query: 523 RFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEI 579
                 G    L I +   +ED G Y C+A++  G     +V L         + +    
Sbjct: 51  VVVQKEGVRSRLTIYNA-NIEDAGIYRCQATDAKGQTQEATVVL--------EIYQKLT- 100

Query: 580 GNQNWGKAMFCDPPTN-----------------YPGVNYYWARDYFPNFVEEDKRVFVSY 622
                    F +  +                   P     W           D R  +  
Sbjct: 101 ---------FREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLA 151

Query: 623 DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPE 682
           +  L    + + D G Y C  + +            + V         +   N   T   
Sbjct: 152 NNNLQILNINKSDEGIYRCEGRVEARGEIDFRDII-VIVNVPPAISMPQKSFN--ATAER 208

Query: 683 APKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF--ENFNRILTIPNVKVEDQGEYI 740
               G+++   C A G P P+ +W R G  +  N  +  +  N  LT+ N+   D G Y+
Sbjct: 209 ----GEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYV 264

Query: 741 CRASNDRSALESSVTISIQAEPNF 764
           CRA+N     E    + +  + + 
Sbjct: 265 CRATNKAGEDEKQAFLQVFVQHHH 288

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  110 bits (277), Expect = 6e-27
 Identities = 49/299 (16%), Positives = 85/299 (28%), Gaps = 64/299 (21%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
                  + V   + +         +C A G P  S +W+                 + +
Sbjct: 5   LQVTISLSKVELSVGE-----SKFFTCTAIGEP-ESIDWYNPQ--------GEKIISTQR 50

Query: 250 RFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEI 306
                 G    L I +   +ED G Y C+A++  G     +V L         + +    
Sbjct: 51  VVVQKEGVRSRLTIYNA-NIEDAGIYRCQATDAKGQTQEATVVL--------EIYQKLT- 100

Query: 307 GNQNWGKAMFCDPPTN-----------------YPGVNYYWARDYFPNFVEEDKRVFVSY 349
                    F +  +                   P     W           D R  +  
Sbjct: 101 ---------FREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLA 151

Query: 350 DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPE 409
           +  L    + + D G Y C  + +            + V         +   N   T   
Sbjct: 152 NNNLQILNINKSDEGIYRCEGRVEARGEIDFRDII-VIVNVPPAISMPQKSFN--ATAER 208

Query: 410 APKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF--ENFNRILTIPNVKM--RGPY 464
               G+++   C A G P P+ +W R G  +  N  +  +  N  LT+ N+     GPY
Sbjct: 209 ----GEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPY 263

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  109 bits (273), Expect = 2e-26
 Identities = 27/120 (22%), Positives = 44/120 (36%), Gaps = 5/120 (4%)

Query: 686 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYIC 741
            G+     C A G P     +  +G  +          E     LTI N  +ED G Y C
Sbjct: 18  VGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRC 77

Query: 742 RASNDR-SALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
           +A++ +    E++V + I  +  F   ++ +      D    C     P    SW  + E
Sbjct: 78  QATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNE 137

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  107 bits (269), Expect = 7e-26
 Identities = 47/274 (17%), Positives = 76/274 (27%), Gaps = 59/274 (21%)

Query: 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVK--------- 459
            G+     C A G P     +  +G  +          E     LTI N           
Sbjct: 18  VGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRC 77

Query: 460 ----MRG--------------PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEW 501
                +G                F +  +   F         D  + C     P P+  W
Sbjct: 78  QATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQG-----EDAEVVCRVSSSPAPAVSW 132

Query: 502 FKEDYVQDRLVANLIDPLSDKRFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSIISES 560
              +          +  +SD RF  L+  NL I +     D G Y C+   +    I   
Sbjct: 133 LYHN--------EEVTTISDNRFAMLANNNLQILNI-NKSDEGIYRCEGRVEARGEIDFR 183

Query: 561 VQLAFGFIG-EFNLKRAPEIGNQNWGK-AMF-C----DPPTNYPGVNYYWARDYFPNFVE 613
             +    +    ++ +         G+   F C     P    P +   W R+      E
Sbjct: 184 DIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPE---PAI--SWFRNGKL-IEE 237

Query: 614 EDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 647
            +K +    +  L    +   D G Y C   +K 
Sbjct: 238 NEKYILKGSNTELTVRNIINSDGGPYVCRATNKA 271

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  107 bits (268), Expect = 8e-26
 Identities = 42/208 (20%), Positives = 70/208 (33%), Gaps = 38/208 (18%)

Query: 612 VEEDKRVFVSYDGA---LYFSALEQIDAGNYSCNVQ----SKVSDTGRNGPFFPLKVFPH 664
           +   +RV V  +G    L        DAG Y C            T        L+++  
Sbjct: 45  IISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVV------LEIYQ- 97

Query: 665 SNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPL---PRN 716
                         TF E         G+   + C     P P+ +W      +     N
Sbjct: 98  ------------KLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDN 145

Query: 717 AYFENFNRILTIPNVKVEDQGEYICRASND--RSALESSVTISIQAEPNFTIP--LTDKH 772
            +    N  L I N+   D+G Y C    +         + + +   P  ++P    +  
Sbjct: 146 RFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNAT 205

Query: 773 MDNQADLTWTCEAFGVPDVTYSWFRNGE 800
            +   ++T++C A G P+   SWFRNG+
Sbjct: 206 AERGEEMTFSCRASGSPEPAISWFRNGK 233

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  100 bits (251), Expect = 2e-23
 Identities = 50/265 (18%), Positives = 76/265 (28%), Gaps = 69/265 (26%)

Query: 339 VEEDKRVFVSYDGA---LYFSALEQIDAGNYSCNVQ----SKVSDTGRNGPFFPLKVFPH 391
           +   +RV V  +G    L        DAG Y C            T        L+++  
Sbjct: 45  IISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVV------LEIYQ- 97

Query: 392 SNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPL---PRN 443
                         TF E         G+   + C     P P+ +W      +     N
Sbjct: 98  ------------KLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDN 145

Query: 444 AYFENFNRILTIPNVKM--RGPYF-------------------IKQPTDVVFDLSKRSIL 482
            +    N  L I N+     G Y                    +  P  +       +  
Sbjct: 146 RFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNAT 205

Query: 483 ----NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQ 538
                ++T SC A G P P+  WF+           LI+         S   L + +   
Sbjct: 206 AERGEEMTFSCRASGSPEPAISWFRNG--------KLIEENEKYILKGSNTELTVRNI-I 256

Query: 539 VEDRGSYHCKASNKFGSIISESVQL 563
             D G Y C+A+NK G    +   L
Sbjct: 257 NSDGGPYVCRATNKAGE-DEKQAFL 280

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 82.6 bits (204), Expect = 2e-17
 Identities = 35/193 (18%), Positives = 59/193 (30%), Gaps = 28/193 (14%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
             F +  +   F         D  + C     P P+  W   +          +  +SD 
Sbjct: 99  LTFREVVSPQEFKQG-----EDAEVVCRVSSSPAPAVSWLYHN--------EEVTTISDN 145

Query: 250 RFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIG-EFNLKRAPEIG 307
           RF  L+  NL I +     D G Y C+   +    I     +    +    ++ +     
Sbjct: 146 RFAMLANNNLQILNI-NKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNA 204

Query: 308 NQNWGK-AMF-C----DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQI 361
               G+   F C     P    P +   W R+      E +K +    +  L    +   
Sbjct: 205 TAERGEEMTFSCRASGSPE---PAI--SWFRNGKL-IEENEKYILKGSNTELTVRNIINS 258

Query: 362 DAGNYSCNVQSKV 374
           D G Y C   +K 
Sbjct: 259 DGGPYVCRATNKA 271

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 64.8 bits (158), Expect = 2e-11
 Identities = 28/136 (20%), Positives = 46/136 (33%), Gaps = 23/136 (16%)

Query: 155 FICEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITL 214
           + CE           + R      DI     +P      ++  +   +  +     ++T 
Sbjct: 168 YRCEGR--------VEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGE-----EMTF 214

Query: 215 SCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHC 274
           SC A G P P+  WF+           LI+         S   L + +     D G Y C
Sbjct: 215 SCRASGSPEPAISWFRNG--------KLIEENEKYILKGSNTELTVRNI-INSDGGPYVC 265

Query: 275 KASNKFGSIISESVQL 290
           +A+NK G    +   L
Sbjct: 266 RATNKAGE-DEKQAFL 280

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  148 bits (374), Expect = 6e-38
 Identities = 69/483 (14%), Positives = 116/483 (24%), Gaps = 89/483 (18%)

Query: 362 DAGNYSCNVQSKVS-DTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGD 415
            A ++ C +   +   TG + P                     P +            GD
Sbjct: 6   GAWDFLCVLLLLLRVQTGSSQPSVSPGEPS-------------PPSIHPGKSDLIVRVGD 52

Query: 416 KVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMR--GPY--------- 464
           ++RL C   G+      WT            EN          +    G Y         
Sbjct: 53  EIRLLCTDPGFV----KWTFEILDETN----ENKQNEWITEKAEATNTGKYTCTNKHGLS 104

Query: 465 -----FIKQPTDVVFDLSKRSIL--NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLID 517
                F++ P  +            ND  + C        +Y                  
Sbjct: 105 NSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQ--------GKPL 156

Query: 518 PLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAP 577
           P   +        ++I   ++   R   HC    +  S++SE   L      +     + 
Sbjct: 157 PKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSV 216

Query: 578 EIGNQ--NWGKA--MFCDPPTNYPGVNYYWARDYFP------NFVEEDKRVFVSYDGALY 627
              +     G+   + C        V   W R+                         L 
Sbjct: 217 SKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLT 276

Query: 628 FSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP-KA 686
            S+    D+G + C   +             L+V          F N FP          
Sbjct: 277 ISSARVNDSGVFMCYANNTFGSANVT---TTLEVVDKG------FINIFPMINTTVFVND 327

Query: 687 GDKVRLECVAFGYPVPS-YNWTRRGSPLP---------RNAYFENFNRILTIPNVKVEDQ 736
           G+ V L      +P P    W                  N     +   L +  +K  + 
Sbjct: 328 GENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEG 387

Query: 737 GEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWF 796
           G Y    SN       +  + +  +P         +          C A G P+ T  W+
Sbjct: 388 GTYTFLVSNSDVNAAIAFNVYVNTKPEILTYDRLVN------GMLQCVAAGFPEPTIDWY 441

Query: 797 RNG 799
              
Sbjct: 442 FCP 444

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  135 bits (341), Expect = 1e-33
 Identities = 50/355 (14%), Positives = 92/355 (25%), Gaps = 55/355 (15%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
           P      +D++  +      ++I L C   G+     +W                 + D+
Sbjct: 37  PSIHPGKSDLIVRVG-----DEIRLLCTDPGFV----KWTF--------------EILDE 73

Query: 523 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQ 582
                    I     +  + G Y C   +   + I   V+       +  L      G +
Sbjct: 74  TNENKQNEWITEKA-EATNTGKYTCTNKHGLSNSIYVFVRDP----AKLFLVDRSLYGKE 128

Query: 583 NWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYF-SALEQIDAGNYSC 641
           +    + C      P V  Y  +      + +D R        +   S           C
Sbjct: 129 DNDTLVRCPLTD--PEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHC 186

Query: 642 NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPV 701
           +V             F LKV P         P           + G++  + C       
Sbjct: 187 SV--DQEGKSVLSEKFILKVRPAFK----AVPVVSVSKASYLLREGEEFTVTCTIKDVSS 240

Query: 702 P-SYNWTRRGSPLPRNAYFE---------NFNRILTIPNVKVEDQGEYICRASNDRSALE 751
                W R  S       +               LTI + +V D G ++C A+N   +  
Sbjct: 241 SVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSAN 300

Query: 752 SSVTISIQAEPNFTIPLTDKHMDNQA-----DLTWTCEAFGVPD-VTYSWFRNGE 800
            + T+ +  +    I +              ++    E    P      W     
Sbjct: 301 VTTTLEVVDKG--FINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNR 353

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  134 bits (338), Expect = 2e-33
 Identities = 74/498 (14%), Positives = 138/498 (27%), Gaps = 106/498 (21%)

Query: 330 WARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF 389
           W  +              +          E  + G Y+C  +  +S++        + VF
Sbjct: 66  WTFEILD-------ETNENKQNEWITEKAEATNTGKYTCTNKHGLSNS--------IYVF 110

Query: 390 PHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTR-RGSPLPRNA-YFE 447
                        F        K  +   + C      V +Y+    +G PLP++  +  
Sbjct: 111 VRD------PAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIP 164

Query: 448 NFNRILTIPNVKM---RGPYF----------------------IKQPTDVVFDLSKRSIL 482
           +    + I +VK    R                           K    V    +   + 
Sbjct: 165 DPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLR 224

Query: 483 --NDITLSCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQV 539
              + T++C      +     W +E+  Q +L                   L I+   +V
Sbjct: 225 EGEEFTVTCTIKDVSSSVYSTWKREN-SQTKLQEKYNSWHHGDFNYERQATLTISSA-RV 282

Query: 540 EDRGSYHCKASNKFGSIISESVQL---AFGFIGEFNLKRAPEIGNQNWGKAMFC-----D 591
            D G + C A+N FGS  + +  L     GFI  F +       N      +        
Sbjct: 283 NDSGVFMCYANNTFGSA-NVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFP 341

Query: 592 PPTNYPGVNYYWARD------YFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQS 645
            P +       W          + ++ + +    + Y   L+ + L+  + G Y+  V +
Sbjct: 342 KPEHQ-----QWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSN 396

Query: 646 KVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYN 705
              +       F + V             N         +      L+CVA G+P P+ +
Sbjct: 397 SDVNAAIA---FNVYV-------------NTKPEILTYDR-LVNGMLQCVAAGFPEPTID 439

Query: 706 WTRRGSPLPRN----------------AYFENFNRILTIPNVKVEDQGEYICRASNDRSA 749
           W        R                   F       +I +   +  G   C+A ND   
Sbjct: 440 WYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGK 499

Query: 750 LESSVTISIQAEPNFTIP 767
             +    + +      I 
Sbjct: 500 TSAYFNFAFKGNNKEQIH 517

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  128 bits (322), Expect = 3e-31
 Identities = 61/511 (11%), Positives = 125/511 (24%), Gaps = 103/511 (20%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           P      +D++  +      ++I L C   G+     +W                 + D+
Sbjct: 37  PSIHPGKSDLIVRVG-----DEIRLLCTDPGFV----KWTF--------------EILDE 73

Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQ 309
                    I     +  + G Y C   +   + I   V+       +  L      G +
Sbjct: 74  TNENKQNEWITEKA-EATNTGKYTCTNKHGLSNSIYVFVRDP----AKLFLVDRSLYGKE 128

Query: 310 NWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYF-SALEQIDAGNYSC 368
           +    + C      P V  Y  +      + +D R        +   S           C
Sbjct: 129 DNDTLVRCPLTD--PEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHC 186

Query: 369 NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPV 428
           +V             F LKV P         P           + G++  + C       
Sbjct: 187 SV--DQEGKSVLSEKFILKVRPAFK----AVPVVSVSKASYLLREGEEFTVTCTIKDVSS 240

Query: 429 P-SYNWTRRGSPLPRNAYFE---------NFNRILTIPNVKM--RGPY------------ 464
                W R  S       +               LTI + ++   G +            
Sbjct: 241 SVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSAN 300

Query: 465 ------FIKQPTDVVFDLSKRSIL----NDITLSCYAGGYPNPS-YEWFKEDYVQDRLVA 513
                  + +    +F +   ++      ++ L      +P P   +W   +        
Sbjct: 301 VTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMN-RTFTDKW 359

Query: 514 NLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNL 573
                  ++        L +    +  + G+Y    SN   +  + +  +         +
Sbjct: 360 EDYPKSENESNIRYVSELHLTRL-KGTEGGTYTFLVSNSDVN-AAIAFNV--------YV 409

Query: 574 KRAPEIGNQNWGK--AMFC----DPPTNYPGVNYYWARDYFPN-----------FVEEDK 616
              PEI   +      + C     P    P +++Y+                   +    
Sbjct: 410 NTKPEILTYDRLVNGMLQCVAAGFPE---PTIDWYFCPGTEQRCSASVLPVDVQTLNSSG 466

Query: 617 RVFVSYDGALYFSALEQIDAGNYSCNVQSKV 647
             F          +      G   C   + V
Sbjct: 467 PPFGKLVVQSSIDSSAFKHNGTVECKAYNDV 497

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  120 bits (302), Expect = 8e-29
 Identities = 63/431 (14%), Positives = 108/431 (25%), Gaps = 88/431 (20%)

Query: 185 KIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLID 244
           + P   + + +      D       ND  + C        +Y                  
Sbjct: 112 RDPAKLFLVDRSLYGKED-------NDTLVRCPLTDPEVTNYSLKGCQ--------GKPL 156

Query: 245 PLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAP 304
           P   +        ++I   ++   R   HC    +  S++SE   L      +     + 
Sbjct: 157 PKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSV 216

Query: 305 EIGNQ--NWGKA--MFCDPPTNYPGVNYYWARDYFP------NFVEEDKRVFVSYDGALY 354
              +     G+   + C        V   W R+                         L 
Sbjct: 217 SKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLT 276

Query: 355 FSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP-KA 413
            S+    D+G + C   +             L+V          F N FP          
Sbjct: 277 ISSARVNDSGVFMCYANNTFGSANVT---TTLEVVDKG------FINIFPMINTTVFVND 327

Query: 414 GDKVRLECVAFGYPVPS-YNWTRRGSPLP---------RNAYFENFNRILTIPNVKM--R 461
           G+ V L      +P P    W                  N     +   L +  +K    
Sbjct: 328 GENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEG 387

Query: 462 GPY------------------------FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP 497
           G Y                         +     V           +  L C A G+P P
Sbjct: 388 GTYTFLVSNSDVNAAIAFNVYVNTKPEILTYDRLV-----------NGMLQCVAAGFPEP 436

Query: 498 SYEWFKEDYVQDRLVANLI--DPLSDKRFTLSGGNLIIN---DPRQVEDRGSYHCKASNK 552
           + +W+     + R  A+++  D  +        G L++    D    +  G+  CKA N 
Sbjct: 437 TIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYND 496

Query: 553 FGSIISESVQL 563
            G   S     
Sbjct: 497 VGK-TSAYFNF 506

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 85.9 bits (212), Expect = 1e-17
 Identities = 45/305 (14%), Positives = 87/305 (28%), Gaps = 54/305 (17%)

Query: 155 FICEASIQKLHYLLNDDRTYQ-YGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDIT 213
             C            + ++       ++        P         +    +     + T
Sbjct: 184 LHCSVD--------QEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGE-----EFT 230

Query: 214 LSCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSY 272
           ++C      +     W +E+  Q +L                   L I+   +V D G +
Sbjct: 231 VTCTIKDVSSSVYSTWKREN-SQTKLQEKYNSWHHGDFNYERQATLTISSA-RVNDSGVF 288

Query: 273 HCKASNKFGSIISESVQL---AFGFIGEFNLKRAPEIGNQNWGKAMFC-----DPPTNYP 324
            C A+N FGS  + +  L     GFI  F +       N      +         P +  
Sbjct: 289 MCYANNTFGSA-NVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQ- 346

Query: 325 GVNYYWARD------YFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTG 378
                W          + ++ + +    + Y   L+ + L+  + G Y+  V +   +  
Sbjct: 347 ----QWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAA 402

Query: 379 RNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGS 438
                F + V             N         +      L+CVA G+P P+ +W     
Sbjct: 403 IA---FNVYV-------------NTKPEILTYDR-LVNGMLQCVAAGFPEPTIDWYFCPG 445

Query: 439 PLPRN 443
              R 
Sbjct: 446 TEQRC 450

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  143 bits (361), Expect = 7e-38
 Identities = 55/331 (16%), Positives = 96/331 (29%), Gaps = 54/331 (16%)

Query: 462 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGY-PNPSYEWFKEDYVQDRLVANLIDPLS 520
           GP+F++  +  V          ++ L C            W+K++          I    
Sbjct: 7   GPHFVEYLSWEVTGEC------NVLLKCKVANIKKETHIVWYKDE--------REISV-- 50

Query: 521 DKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKR 575
           D++     G   L+I +    +D G Y     +  G   S      +     + E   K 
Sbjct: 51  DEKHDFKDGICTLLITEF-SKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKI 109

Query: 576 APEIGNQNW-----GKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDG---ALY 627
           A    +        G  ++         +   W+ +     +    RV     G    L 
Sbjct: 110 ALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSA--IRYSDRVKTGVTGEQIWLQ 167

Query: 628 FSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF----PHSNFQQLKFP----NNFPKT 679
            +     D G Y   +         +     L        ++ FQ+LK       N  + 
Sbjct: 168 INEPTPNDKGKYVMELFDGK---TGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARV 224

Query: 680 FPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIP 729
               P       G  + L C  +G P P  +W +    L  + +             TI 
Sbjct: 225 LGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTIN 284

Query: 730 NVKVEDQGEYICRASNDRSALESSVTISIQA 760
            V   D G+Y     N   +  S  T+S+  
Sbjct: 285 GVSTADSGKYGLVVKNKYGSETSDFTVSVFI 315

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  116 bits (293), Expect = 7e-29
 Identities = 50/310 (16%), Positives = 87/310 (28%), Gaps = 56/310 (18%)

Query: 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGY-PNPSYEWFKEDYVQDRLVANLIDPLS 247
           GP+F++  +  V          ++ L C            W+K++          I    
Sbjct: 7   GPHFVEYLSWEVTGEC------NVLLKCKVANIKKETHIVWYKDE--------REISV-- 50

Query: 248 DKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKR 302
           D++     G   L+I +    +D G Y     +  G   S      +     + E   K 
Sbjct: 51  DEKHDFKDGICTLLITEF-SKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKI 109

Query: 303 APEIGNQNW-----GKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDG---ALY 354
           A    +        G  ++         +   W+ +     +    RV     G    L 
Sbjct: 110 ALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSA--IRYSDRVKTGVTGEQIWLQ 167

Query: 355 FSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF----PHSNFQQLKFP----NNFPKT 406
            +     D G Y   +         +     L        ++ FQ+LK       N  + 
Sbjct: 168 INEPTPNDKGKYVMELFDGK---TGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARV 224

Query: 407 FPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIP 456
               P       G  + L C  +G P P  +W +    L  + +             TI 
Sbjct: 225 LGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTIN 284

Query: 457 NVKMR--GPY 464
            V     G Y
Sbjct: 285 GVSTADSGKY 294

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 97.7 bits (243), Expect = 2e-22
 Identities = 25/139 (17%), Positives = 43/139 (30%), Gaps = 17/139 (12%)

Query: 679 TFPEAPK----AGDKVRLECVAFGY-PVPSYNWTRRGSPLPRNA--YFENFNRILTIPNV 731
            F E           V L+C            W +    +  +    F++    L I   
Sbjct: 9   HFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEF 68

Query: 732 KVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEA------ 785
             +D G Y     +DR   +S + +  +A     + +  K   +  DL     A      
Sbjct: 69  SKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLY 128

Query: 786 ----FGVPDVTYSWFRNGE 800
               + V D+  +W  NG 
Sbjct: 129 SFVTYYVEDLKVNWSHNGS 147

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 86.9 bits (215), Expect = 1e-18
 Identities = 35/231 (15%), Positives = 63/231 (27%), Gaps = 31/231 (13%)

Query: 597 PGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPF 656
              +  W +D       ++K  F      L  +   + DAG Y   ++      G++   
Sbjct: 35  KETHIVWYKDERE-ISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDR---GKDKSR 90

Query: 657 FPLKVFPHSNFQQLKFPNNFPKTFPEAPK--AGDKVRLECVAFGYPVPSYNWTRRGSPLP 714
             L                         +  A        V +       NW+  GS + 
Sbjct: 91  LKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIR 150

Query: 715 RNA----YFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTD 770
            +             L I      D+G+Y+    + ++  + +V +S QA          
Sbjct: 151 YSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQR 210

Query: 771 KHMDNQAD---------------------LTWTCEAFGVPDVTYSWFRNGE 800
                 A+                     L  TC  +G P    SW +N +
Sbjct: 211 LKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEK 261

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 62.6 bits (152), Expect = 1e-10
 Identities = 30/216 (13%), Positives = 59/216 (27%), Gaps = 43/216 (19%)

Query: 190 PYFIKQPTDVVF----DLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLID 244
              + +    +     DL  +S    I L  +      +    W            + I 
Sbjct: 99  KELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNG--------SAIR 150

Query: 245 PLSDKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFN 299
                +  ++G    L IN+P    D+G Y  +  +           S Q       EF 
Sbjct: 151 YSDRVKTGVTGEQIWLQINEP-TPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQ 209

Query: 300 LKRAPEIGNQNWGKAMFCDPPTNY-----------------PGVNYYWARDYFPNFVEED 342
             +   I  +N  + +    P                    P     W ++     +  D
Sbjct: 210 RLKQAAIAEKNRAR-VLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKA--LASD 266

Query: 343 KRVFVSYD----GALYFSALEQIDAGNYSCNVQSKV 374
               + ++         + +   D+G Y   V++K 
Sbjct: 267 DHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKY 302

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 56.5 bits (136), Expect = 1e-08
 Identities = 22/103 (21%), Positives = 28/103 (27%), Gaps = 17/103 (16%)

Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 246
            R       P  V     K      + L+C   G P P   W K +          +   
Sbjct: 220 NRARVLGGLPDVVTIQEGK-----ALNLTCNVWGDPPPEVSWLKNE--------KALASD 266

Query: 247 SDKRFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISE 286
                    G      IN      D G Y     NK+GS  S+
Sbjct: 267 DHCNLKFEAGRTAYFTINGV-STADSGKYGLVVKNKYGSETSD 308

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  140 bits (355), Expect = 2e-37
 Identities = 58/320 (18%), Positives = 104/320 (32%), Gaps = 50/320 (15%)

Query: 461 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYP-NPSYEWFKEDYVQDRLVANLIDPL 519
           R       P+     + +          C   G   +    WF  +              
Sbjct: 1   RVLQVDIVPSQGEISVGE-----SKFFLCQVAGDAKDKDISWFSPN--------GEKLSP 47

Query: 520 SDKRFTL-----SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK 574
           + +R ++         L I +   ++D G Y C  + + G+    +V +         + 
Sbjct: 48  NQQRISVVWNDDDSSTLTIYNA-NIDDAGIYKCVVTAEDGTQSEATVNV--------KIF 98

Query: 575 RAPEIGNQ------NWGKA--MFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGAL 626
           +     N         G+   + CD   +       W        +++D R  V  +  L
Sbjct: 99  QKLMFKNAPTPQEFKEGEDAVIVCDV-VSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYL 157

Query: 627 YFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA 686
               +++ D G Y C  +              + V      Q  +   N   T       
Sbjct: 158 QIRGIKKTDEGTYRCEGRILARGEINFKDIQ-VIVNVPPTVQARQSIVN--ATANL---- 210

Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA------YFENFNRILTIPNVKVEDQGEYI 740
           G  V L C A G+P P+ +WT+ G P+           F + +  LTI NV   D+ EY+
Sbjct: 211 GQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYV 270

Query: 741 CRASNDRSALESSVTISIQA 760
           C A N     ++S+ + + A
Sbjct: 271 CIAENKAGEQDASIHLKVFA 290

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  113 bits (285), Expect = 6e-28
 Identities = 51/299 (17%), Positives = 90/299 (30%), Gaps = 52/299 (17%)

Query: 188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYP-NPSYEWFKEDYVQDRLVANLIDPL 246
           R       P+     + +          C   G   +    WF  +              
Sbjct: 1   RVLQVDIVPSQGEISVGE-----SKFFLCQVAGDAKDKDISWFSPN--------GEKLSP 47

Query: 247 SDKRFTL-----SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK 301
           + +R ++         L I +   ++D G Y C  + + G+    +V +         + 
Sbjct: 48  NQQRISVVWNDDDSSTLTIYNA-NIDDAGIYKCVVTAEDGTQSEATVNV--------KIF 98

Query: 302 RAPEIGNQ------NWGKA--MFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGAL 353
           +     N         G+   + CD   +       W        +++D R  V  +  L
Sbjct: 99  QKLMFKNAPTPQEFKEGEDAVIVCDV-VSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYL 157

Query: 354 YFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA 413
               +++ D G Y C  +              + V      Q  +   N   T       
Sbjct: 158 QIRGIKKTDEGTYRCEGRILARGEINFKDIQ-VIVNVPPTVQARQSIVN--ATANL---- 210

Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA------YFENFNRILTIPNVKMR--GPY 464
           G  V L C A G+P P+ +WT+ G P+           F + +  LTI NV       Y
Sbjct: 211 GQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEY 269

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  112 bits (282), Expect = 1e-27
 Identities = 41/233 (17%), Positives = 71/233 (30%), Gaps = 39/233 (16%)

Query: 588 MFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD----GALYFSALEQIDAGNYSCNV 643
             C    +    +  W            +R+ V ++      L        DAG Y C V
Sbjct: 22  FLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV 81

Query: 644 Q----SKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLEC 694
                ++   T        +K+F                 F  AP       G+   + C
Sbjct: 82  TAEDGTQSEATVN------VKIFQ-------------KLMFKNAPTPQEFKEGEDAVIVC 122

Query: 695 VAFGYPVPSYNWTRRGSPLP---RNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALE 751
                  P+  W  +G  +       +    N  L I  +K  D+G Y C          
Sbjct: 123 DVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEI 182

Query: 752 SS--VTISIQAEPNFTIP--LTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
           +   + + +   P       + +   +    +T  C+A G P+ T SW ++GE
Sbjct: 183 NFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGE 235

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  107 bits (269), Expect = 7e-26
 Identities = 50/282 (17%), Positives = 84/282 (29%), Gaps = 67/282 (23%)

Query: 413 AGDKVRLECVAFGYP-VPSYNWTRR-GSPLPRN------AYFENFNRILTIPNVKM--RG 462
            G+     C   G       +W    G  L  N       + ++ +  LTI N  +   G
Sbjct: 16  VGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAG 75

Query: 463 PY-------------------------FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP 497
            Y                         F   PT   F   +     D  + C       P
Sbjct: 76  IYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGE-----DAVIVCDVVSSLPP 130

Query: 498 SYEWFKEDYVQDRLVANLIDPLSDKRFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSI 556
           +  W  +           +    D RF  LS   L I    +  D G+Y C+        
Sbjct: 131 TIIWKHKG--------RDVILKKDVRFIVLSNNYLQIRGI-KKTDEGTYRCEGRILARGE 181

Query: 557 ISE-SVQLAFGFIGEFNLKRAPEIGNQNWGKAMF--CD-----PPTNYPGVNYYWARDYF 608
           I+   +Q+          +++      N G+++   CD      PT        W +D  
Sbjct: 182 INFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTM------SWTKDGE 235

Query: 609 P---NFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 647
           P      +++K +F      L    +++ D   Y C  ++K 
Sbjct: 236 PIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKA 277

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  106 bits (267), Expect = 1e-25
 Identities = 50/296 (16%), Positives = 82/296 (27%), Gaps = 78/296 (26%)

Query: 315 MFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD----GALYFSALEQIDAGNYSCNV 370
             C    +    +  W            +R+ V ++      L        DAG Y C V
Sbjct: 22  FLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV 81

Query: 371 Q----SKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLEC 421
                ++   T        +K+F                 F  AP       G+   + C
Sbjct: 82  TAEDGTQSEATVN------VKIFQ-------------KLMFKNAPTPQEFKEGEDAVIVC 122

Query: 422 VAFGYPVPSYNWTRRGSPLP---RNAYFENFNRILTIPNVKM--RGPY------------ 464
                  P+  W  +G  +       +    N  L I  +K    G Y            
Sbjct: 123 DVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEI 182

Query: 465 ----------------FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQ 508
                             +   +   +L +      +TL C A G+P P+  W K+    
Sbjct: 183 NFKDIQVIVNVPPTVQARQSIVNATANLGQ-----SVTLVCDADGFPEPTMSWTKDG--- 234

Query: 509 DRLVANLIDPLSDKRF-TLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
           + +     +   +K   +     L I +     D   Y C A NK G     S+ L
Sbjct: 235 EPIENE--EEDDEKHIFSDDSSELTIRNV-DKNDEAEYVCIAENKAGE-QDASIHL 286

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 91.9 bits (228), Expect = 1e-20
 Identities = 25/124 (20%), Positives = 42/124 (33%), Gaps = 9/124 (7%)

Query: 686 AGDKVRLECVAFGYP-VPSYNWTRR-GSPLPRN------AYFENFNRILTIPNVKVEDQG 737
            G+     C   G       +W    G  L  N       + ++ +  LTI N  ++D G
Sbjct: 16  VGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAG 75

Query: 738 EYICRASNDR-SALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWF 796
            Y C  + +  +  E++V + I  +  F    T +      D    C+       T  W 
Sbjct: 76  IYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWK 135

Query: 797 RNGE 800
             G 
Sbjct: 136 HKGR 139

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 91.5 bits (227), Expect = 2e-20
 Identities = 39/202 (19%), Positives = 67/202 (33%), Gaps = 32/202 (15%)

Query: 185 KIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLID 244
           KI +   F   PT   F   +     D  + C       P+  W  +           + 
Sbjct: 96  KIFQKLMFKNAPTPQEFKEGE-----DAVIVCDVVSSLPPTIIWKHKG--------RDVI 142

Query: 245 PLSDKRFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE-SVQLAFGFIGEFNLKR 302
              D RF  LS   L I    +  D G+Y C+        I+   +Q+          ++
Sbjct: 143 LKKDVRFIVLSNNYLQIRGI-KKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQ 201

Query: 303 APEIGNQNWGKAMF--CD-----PPTNYPGVNYYWARDYFP---NFVEEDKRVFVSYDGA 352
           +      N G+++   CD      PT        W +D  P      +++K +F      
Sbjct: 202 SIVNATANLGQSVTLVCDADGFPEPTM------SWTKDGEPIENEEEDDEKHIFSDDSSE 255

Query: 353 LYFSALEQIDAGNYSCNVQSKV 374
           L    +++ D   Y C  ++K 
Sbjct: 256 LTIRNVDKNDEAEYVCIAENKA 277

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 62.2 bits (151), Expect = 2e-10
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 8/81 (9%)

Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRF-TLSGGNLIINDPRQVEDR 269
            +TL C A G+P P+  W K+    + +     +   +K   +     L I +     D 
Sbjct: 213 SVTLVCDADGFPEPTMSWTKDG---EPIENE--EEDDEKHIFSDDSSELTIRNV-DKNDE 266

Query: 270 GSYHCKASNKFGSIISESVQL 290
             Y C A NK G     S+ L
Sbjct: 267 AEYVCIAENKAGE-QDASIHL 286

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  139 bits (351), Expect = 9e-37
 Identities = 72/309 (23%), Positives = 104/309 (33%), Gaps = 41/309 (13%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
           P+F  +P  V   L +       T  C+  G       W K++          I P  + 
Sbjct: 6   PFFDLKPVSVDLALGE-----SGTFKCHVTGTAPIKITWAKDN--------REIRPGGNY 52

Query: 523 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKRAP 577
           + TL      L +    +  D G Y C ASN  G         VQ    FI +    R  
Sbjct: 53  KMTLVENTATLTVLKVTK-GDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIV 111

Query: 578 EIGNQNWGKAMF-CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD-GALYFSALEQID 635
           +          + C      P +   W +D          R+        L    L   D
Sbjct: 112 KQDEH----TRYEC-KIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVED 166

Query: 636 AGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECV 695
           +G+Y+C   +     G       LKV     F   K P+       +    G  V LEC 
Sbjct: 167 SGDYTCEAHNAA---GSASSSTSLKVKEPPVF--RKKPHP--VETLK----GADVHLECE 215

Query: 696 AFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYICRASNDRSALE 751
             G P    +W +    L     +    ENF   + I NV   D GEY C+ASND  +  
Sbjct: 216 LQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYT 275

Query: 752 SSVTISIQA 760
              +I+++A
Sbjct: 276 CVGSITLKA 284

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  122 bits (308), Expect = 4e-31
 Identities = 48/209 (22%), Positives = 74/209 (35%), Gaps = 25/209 (11%)

Query: 602 YWARDYFPNFVEEDKRV---FVSYDGALYFSALEQIDAGNYSC---NVQSKVSDTGRNGP 655
            WA+D     +          V     L    + + DAG Y+C   NV  K S + +   
Sbjct: 38  TWAKDNRE--IRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQ--- 92

Query: 656 FFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPR 715
              L V     F  +K             K  +  R EC   G P     W +  + +  
Sbjct: 93  ---LGVQEPPRF--IKKLEP-----SRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQE 142

Query: 716 NAYF----ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDK 771
           ++ F         +L + N+ VED G+Y C A N   +  SS ++ ++  P F       
Sbjct: 143 SSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPV 202

Query: 772 HMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
                AD+   CE  G P    SW ++  
Sbjct: 203 ETLKGADVHLECELQGTPPFQVSWHKDKR 231

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  110 bits (276), Expect = 6e-27
 Identities = 63/288 (21%), Positives = 89/288 (30%), Gaps = 43/288 (14%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           P+F  +P  V   L +       T  C+  G       W K++          I P  + 
Sbjct: 6   PFFDLKPVSVDLALGE-----SGTFKCHVTGTAPIKITWAKDN--------REIRPGGNY 52

Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKRAP 304
           + TL      L +    +  D G Y C ASN  G         VQ    FI +    R  
Sbjct: 53  KMTLVENTATLTVLKVTK-GDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIV 111

Query: 305 EIGNQNWGKAMF-CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD-GALYFSALEQID 362
           +          + C      P +   W +D          R+        L    L   D
Sbjct: 112 KQDEH----TRYEC-KIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVED 166

Query: 363 AGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECV 422
           +G+Y+C   +     G       LKV     F   K P+       +    G  V LEC 
Sbjct: 167 SGDYTCEAHNAA---GSASSSTSLKVKEPPVF--RKKPHP--VETLK----GADVHLECE 215

Query: 423 AFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKMR--GPY 464
             G P    +W +    L     +    ENF   + I NV     G Y
Sbjct: 216 LQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEY 263

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  107 bits (269), Expect = 5e-26
 Identities = 51/292 (17%), Positives = 80/292 (27%), Gaps = 73/292 (25%)

Query: 404 PKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA----YFENFNRILT 454
           P  F   P       G+    +C   G       W +    +                LT
Sbjct: 5   PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLT 64

Query: 455 IPNVK-------------MRG-------------PYFIKQPTDVVFDLSKRSILNDITLS 488
           +  V              + G             P FIK+                    
Sbjct: 65  VLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEH----TRYE 120

Query: 489 CYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGN--LIINDPRQVEDRGSYH 546
           C  GG P     W+K++          I   S  R +       L + +   VED G Y 
Sbjct: 121 CKIGGSPEIKVLWYKDE--------TEIQESSKFRMSFVESVAVLEMYNL-SVEDSGDYT 171

Query: 547 CKASNKFGSIISE---SVQLAFGFIGEFNLKRAPEIGNQNWGKAMF-C----DPPTNYPG 598
           C+A N  GS  S     V+    F  + +     + G          C     PP     
Sbjct: 172 CEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLK-G----ADVHLECELQGTPP---FQ 223

Query: 599 VNYYWARDYFPNFVEEDKRVFVSYDGA---LYFSALEQIDAGNYSCNVQSKV 647
           V+  W +D     +   K+  +  +     ++   ++  D G Y C   + V
Sbjct: 224 VS--WHKDKRE--LRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDV 271

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  105 bits (264), Expect = 3e-25
 Identities = 56/276 (20%), Positives = 84/276 (30%), Gaps = 74/276 (26%)

Query: 329 YWARDYFPNFVEEDKRV---FVSYDGALYFSALEQIDAGNYSC---NVQSKVSDTGRNGP 382
            WA+D     +          V     L    + + DAG Y+C   NV  K S + +   
Sbjct: 38  TWAKDNRE--IRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQ--- 92

Query: 383 FFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPR 442
              L V     F  +K             K  +  R EC   G P     W +  + +  
Sbjct: 93  ---LGVQEPPRF--IKKLEP-----SRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQE 142

Query: 443 NAYF----ENFNRILTIPNVKMR--G------------------------PYFIKQPTDV 472
           ++ F         +L + N+ +   G                        P F K+P  V
Sbjct: 143 SSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPV 202

Query: 473 VFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL-SDKRFTLSGGN- 530
                      D+ L C   G P     W K+              L S K++ +   N 
Sbjct: 203 ETLKGA-----DVHLECELQGTPPFQVSWHKDK-----------RELRSGKKYKIMSENF 246

Query: 531 ---LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
              + I +     D G Y CKASN  GS  +    +
Sbjct: 247 LTSIHILNV-DSADIGEYQCKASNDVGS-YTCVGSI 280

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 79.8 bits (197), Expect = 2e-16
 Identities = 40/198 (20%), Positives = 63/198 (31%), Gaps = 38/198 (19%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           P FIK+                    C  GG P     W+K++          I   S  
Sbjct: 99  PRFIKKLEPSRIVKQDEHT----RYECKIGGSPEIKVLWYKDE--------TEIQESSKF 146

Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKRAP 304
           R +       L + +   VED G Y C+A N  GS  S     V+    F  + +     
Sbjct: 147 RMSFVESVAVLEMYNL-SVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETL 205

Query: 305 EIGNQNWGKAMF-C----DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA---LYFS 356
           + G          C     PP     V+  W +D     +   K+  +  +     ++  
Sbjct: 206 K-G----ADVHLECELQGTPP---FQVS--WHKDKRE--LRSGKKYKIMSENFLTSIHIL 253

Query: 357 ALEQIDAGNYSCNVQSKV 374
            ++  D G Y C   + V
Sbjct: 254 NVDSADIGEYQCKASNDV 271

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 27/106 (25%), Positives = 37/106 (34%), Gaps = 23/106 (21%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL-SD 248
           P F K+P  V           D+ L C   G P     W K+              L S 
Sbjct: 193 PVFRKKPHPVETLKGA-----DVHLECELQGTPPFQVSWHKDK-----------RELRSG 236

Query: 249 KRFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
           K++ +   N    + I +     D G Y CKASN  GS  +    +
Sbjct: 237 KKYKIMSENFLTSIHILNV-DSADIGEYQCKASNDVGS-YTCVGSI 280

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  127 bits (321), Expect = 1e-32
 Identities = 42/326 (12%), Positives = 88/326 (26%), Gaps = 45/326 (13%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
           P+  +   +V  D         +   C     P   + W K+            +     
Sbjct: 4   PFTKEVVVNVDDDGVIS-----LNFECDKMT-PKSEFSWSKDY--------VSTEDSPRL 49

Query: 523 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISESV---QLAFGFIGEFNLKRAP 577
                G    +   D   ++D G Y C  ++  G   S  +   +L          K   
Sbjct: 50  EVESKGNKTKMTFKDL-GMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPT 108

Query: 578 EIGNQNWGK--------AMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA---- 625
                              +             +  +     + E  +  +  D      
Sbjct: 109 VPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKE--IFEGPKYKMHIDRNTGII 166

Query: 626 -LYFSALEQIDAGNYSC---NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFP 681
            ++   L+  D G Y+    + ++    T         K+   + FQ+ ++       F 
Sbjct: 167 EMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFV 226

Query: 682 EAPK----AGDKVRLECVAFGYPVPSY-NWTRRGSPLPRNAYF--ENFNRILTIPNVKVE 734
           E           V L+C        ++  W +    +  +     ++    L I     +
Sbjct: 227 EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKK 286

Query: 735 DQGEYICRASNDRSALESSVTISIQA 760
           D G Y     +DR   +S + +  +A
Sbjct: 287 DAGIYEVILKDDRGKDKSRLKLVDEA 312

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  100 bits (250), Expect = 2e-23
 Identities = 35/239 (14%), Positives = 72/239 (30%), Gaps = 42/239 (17%)

Query: 597 PGVNYYWARDYFPNFVEEDKRVFVSYDGA---LYFSALEQIDAGNYSCNVQSKVSDTGRN 653
           P   + W++DY     E+  R+ V   G    + F  L   D G YSC     V+DT   
Sbjct: 30  PKSEFSWSKDYVS--TEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSC----DVTDTDGI 83

Query: 654 GPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA------GDKVRLECVAFGYPVPSYNWT 707
              + +          L   + FP    ++  A      G                 N+ 
Sbjct: 84  ASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYI 143

Query: 708 RRGSPLPRNAYF------ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQA- 760
                +     +            + +  ++ ED+G Y  +  + ++   S+V +     
Sbjct: 144 FNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVF 203

Query: 761 ------------------EPNFTIPLTDKHMDNQADLTWTCEAFGV-PDVTYSWFRNGE 800
                              P+F   L+ +      ++   C+   +  +    W+++  
Sbjct: 204 KKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGEC-NVLLKCKVANIKKETHIVWYKDER 261

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 96.6 bits (240), Expect = 6e-22
 Identities = 35/298 (11%), Positives = 75/298 (25%), Gaps = 45/298 (15%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           P+  +   +V  D         +   C     P   + W K+            +     
Sbjct: 4   PFTKEVVVNVDDDGVIS-----LNFECDKMT-PKSEFSWSKDY--------VSTEDSPRL 49

Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISESV---QLAFGFIGEFNLKRAP 304
                G    +   D   ++D G Y C  ++  G   S  +   +L          K   
Sbjct: 50  EVESKGNKTKMTFKDL-GMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPT 108

Query: 305 EIGNQNWGK--------AMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA---- 352
                              +             +  +     + E  +  +  D      
Sbjct: 109 VPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKE--IFEGPKYKMHIDRNTGII 166

Query: 353 -LYFSALEQIDAGNYSC---NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFP 408
            ++   L+  D G Y+    + ++    T         K+   + FQ+ ++       F 
Sbjct: 167 EMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFV 226

Query: 409 EAPK----AGDKVRLECVAFGYPVPSY-NWTRRGSPLPRNAYF--ENFNRILTIPNVK 459
           E           V L+C        ++  W +    +  +     ++    L I    
Sbjct: 227 EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFS 284

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 57.7 bits (139), Expect = 5e-09
 Identities = 23/220 (10%), Positives = 53/220 (24%), Gaps = 41/220 (18%)

Query: 178 MDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDR 237
           + + +  K P     +K    V      +                N    +   +     
Sbjct: 98  LALSHEHKFP--TVPVKSELAVEILEKGQVRF----WMQAEKLSGNAKVNYIFNE----- 146

Query: 238 LVANLIDPLSDKRFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFG 293
                I      +  +        + +    Q ED G+Y  +  +   +  S +V L   
Sbjct: 147 ---KEIFEGPKYKMHIDRNTGIIEMFMEKL-QDEDEGTYTFQLQDGKATNHS-TVVLVGD 201

Query: 294 FIGEFNLKRAPEIGNQNWGKA------------------MFCDPPTNYPGVNYYWARDYF 335
              +   +   +       +                   + C         +  W +D  
Sbjct: 202 VFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDER 261

Query: 336 PNFVEEDKRVFVSYDGA-LYFSALEQIDAGNYSCNVQSKV 374
              +  D++         L  +   + DAG Y   ++   
Sbjct: 262 E--ISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDR 299

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 53.5 bits (128), Expect = 1e-07
 Identities = 19/113 (16%), Positives = 39/113 (34%), Gaps = 21/113 (18%)

Query: 181 ENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSY-EWFKEDYVQDRLV 239
                  +GP+F++  +  V          ++ L C        ++  W+K++       
Sbjct: 214 RQEWIRKQGPHFVEYLSWEVTGEC------NVLLKCKVANIKKETHIVWYKDE------- 260

Query: 240 ANLIDPLSDKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
              I    D++     G   L+I +    +D G Y     +  G   S  ++L
Sbjct: 261 -REISV--DEKHDFKDGICTLLITEF-SKKDAGIYEVILKDDRGKDKS-RLKL 308

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  125 bits (316), Expect = 9e-32
 Identities = 61/351 (17%), Positives = 98/351 (27%), Gaps = 73/351 (20%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPL-S 520
                Q   +VF        + + LSC   GG P     W K+              L  
Sbjct: 9   GPEPGQQEQLVFGSG-----DAVELSCPPPGGGPMGPTVWVKDG-----------TGLVP 52

Query: 521 DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNL--KRAPE 578
            +R  +    L + +    ED G+Y C+       +   SV++        +   +   E
Sbjct: 53  SERVLVGPQRLQVLNASH-EDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAE 111

Query: 579 IGNQNWGKAMFCDPPTN---------------------YPGVNYYWARD--YFPNFVEED 615
               + G   +  P                         P  +  W ++   F       
Sbjct: 112 DTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIG 171

Query: 616 KRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF---PHSNFQQLKF 672
                    +L   ++   D GNY+C V++K    G     + L V    PH    Q   
Sbjct: 172 GIKLRHQQWSLVMESVVPSDRGNYTCVVENKF---GSIRQTYTLDVLERSPHRPILQAGL 228

Query: 673 PNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPR----------------- 715
           P N  +T       G  V   C  +    P   W +                        
Sbjct: 229 PAN--QTAVL----GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAG 282

Query: 716 NAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTI 766
               +    +L++ NV  ED GEY C A N       S  + +       +
Sbjct: 283 ANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEELV 333

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  119 bits (300), Expect = 1e-29
 Identities = 43/237 (18%), Positives = 72/237 (30%), Gaps = 29/237 (12%)

Query: 590 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSD 649
           C PP   P     W +D     +   +RV V     L        D+G YSC  +     
Sbjct: 30  CPPPGGGPMGPTVWVKDGTG--LVPSERVLVG-PQRLQVLNASHEDSGAYSCRQRLTQRV 86

Query: 650 TGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK---------------AGDKVRLEC 694
              +            + +  +           AP                A + VR  C
Sbjct: 87  L-CHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRC 145

Query: 695 VAFGYPVPSYNWTRRGSPLPRNA-----YFENFNRILTIPNVKVEDQGEYICRASNDRSA 749
            A G P PS +W + G               +    L + +V   D+G Y C   N   +
Sbjct: 146 PAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGS 205

Query: 750 LESSVTISIQAEPNFTIPLTDKHMDNQ-----ADLTWTCEAFGVPDVTYSWFRNGEL 801
           +  + T+ +         L      NQ     +D+ + C+ +        W ++ E+
Sbjct: 206 IRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEV 262

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  105 bits (264), Expect = 7e-25
 Identities = 52/305 (17%), Positives = 75/305 (24%), Gaps = 69/305 (22%)

Query: 317 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSD 376
           C PP   P     W +D     +   +RV V     L        D+G YSC  +     
Sbjct: 30  CPPPGGGPMGPTVWVKDGTG--LVPSERVLVG-PQRLQVLNASHEDSGAYSCRQRLTQRV 86

Query: 377 TGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK---------------AGDKVRLEC 421
              +            + +  +           AP                A + VR  C
Sbjct: 87  L-CHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRC 145

Query: 422 VAFGYPVPSYNWTRRGSPLPRNA-----YFENFNRILTIPNVKM--RGPY---------- 464
            A G P PS +W + G               +    L + +V    RG Y          
Sbjct: 146 PAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGS 205

Query: 465 -------------------FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKED 505
                                  P +    L       D+   C       P  +W K  
Sbjct: 206 IRQTYTLDVLERSPHRPILQAGLPANQTAVLGS-----DVEFHCKVYSDAQPHIQWLKHV 260

Query: 506 YV-------QDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIIS 558
            V              ++              L +++    ED G Y C A N  G    
Sbjct: 261 EVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNV-TFEDAGEYTCLAGNSIGF-SH 318

Query: 559 ESVQL 563
            S  L
Sbjct: 319 HSAWL 323

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  102 bits (254), Expect = 1e-23
 Identities = 33/156 (21%), Positives = 48/156 (30%), Gaps = 31/156 (19%)

Query: 676 FPKTFPEAPK-----AGDKVRLECVAF-GYPVPSYNWTRRGSPLPRNAYFENFNRILTIP 729
            P   P   +     +GD V L C    G P+    W + G+ L  +       + L + 
Sbjct: 7   VPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVL 66

Query: 730 NVKVEDQGEYICRASN---------------------DRSALESSVTISIQAEPNFTIPL 768
           N   ED G Y CR                        +    E+  T      P +T P 
Sbjct: 67  NASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPE 126

Query: 769 TDKHMDNQA----DLTWTCEAFGVPDVTYSWFRNGE 800
                         + + C A G P  + SW +NG 
Sbjct: 127 RMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGR 162

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 97.4 bits (242), Expect = 4e-22
 Identities = 53/324 (16%), Positives = 80/324 (24%), Gaps = 95/324 (29%)

Query: 403 FPKTFPEAPK-----AGDKVRLECVAF-GYPVPSYNWTRRGSPLPRNAYFENFNRILTIP 456
            P   P   +     +GD V L C    G P+    W + G+ L  +       + L + 
Sbjct: 7   VPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVL 66

Query: 457 NVKM-----------------------------------------------RGPYFIKQP 469
           N                                                    PY+ +  
Sbjct: 67  NASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPE 126

Query: 470 TDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGG 529
                 L+     N +   C A G P PS  W K               +   +      
Sbjct: 127 RMDKKLLA-VPAANTVRFRCPAAGNPTPSISWLKNG---REFRGE--HRIGGIKLRHQQW 180

Query: 530 NLIINDPRQVEDRGSYHCKASNKFGSIISESVQL---------AFGFIGEFNLKRA---- 576
           +L++       DRG+Y C   NKFGS I ++  L              G    + A    
Sbjct: 181 SLVMESV-VPSDRGNYTCVVENKFGS-IRQTYTLDVLERSPHRPILQAGLPANQTAVLGS 238

Query: 577 -------------PEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD 623
                        P I    W K +  +     P         Y                
Sbjct: 239 DVEFHCKVYSDAQPHI---QWLKHVEVNGSKVGPD-----GTPYVTVLKTAGANTTDKEL 290

Query: 624 GALYFSALEQIDAGNYSCNVQSKV 647
             L    +   DAG Y+C   + +
Sbjct: 291 EVLSLHNVTFEDAGEYTCLAGNSI 314

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 95.5 bits (237), Expect = 2e-21
 Identities = 49/302 (16%), Positives = 82/302 (27%), Gaps = 56/302 (18%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPL-S 247
                Q   +VF        + + LSC   GG P     W K+              L  
Sbjct: 9   GPEPGQQEQLVFGSG-----DAVELSCPPPGGGPMGPTVWVKDG-----------TGLVP 52

Query: 248 DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNL--KRAPE 305
            +R  +    L + +    ED G+Y C+       +   SV++        +   +   E
Sbjct: 53  SERVLVGPQRLQVLNASH-EDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAE 111

Query: 306 IGNQNWGKAMFCDPPTN---------------------YPGVNYYWARD--YFPNFVEED 342
               + G   +  P                         P  +  W ++   F       
Sbjct: 112 DTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIG 171

Query: 343 KRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF---PHSNFQQLKF 399
                    +L   ++   D GNY+C V++K    G     + L V    PH    Q   
Sbjct: 172 GIKLRHQQWSLVMESVVPSDRGNYTCVVENKF---GSIRQTYTLDVLERSPHRPILQAGL 228

Query: 400 PNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVK 459
           P N  +T       G  V   C  +    P   W +           +    +  +    
Sbjct: 229 PAN--QTAVL----GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAG 282

Query: 460 MR 461
             
Sbjct: 283 AN 284

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 69.6 bits (170), Expect = 7e-13
 Identities = 40/220 (18%), Positives = 60/220 (27%), Gaps = 42/220 (19%)

Query: 181 ENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVA 240
           E+       PY+ +        L+     N +   C A G P PS  W K          
Sbjct: 111 EDTGVDTGAPYWTRPERMDKKLLA-VPAANTVRFRCPAAGNPTPSISWLKNG---REFRG 166

Query: 241 NLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL---------A 291
                +   +      +L++       DRG+Y C   NKFGS I ++  L          
Sbjct: 167 E--HRIGGIKLRHQQWSLVMESV-VPSDRGNYTCVVENKFGS-IRQTYTLDVLERSPHRP 222

Query: 292 FGFIGEFNLKRA-----------------PEIGNQNWGKAMFCDPPTNYPGVNYYWARDY 334
               G    + A                 P I    W K +  +     P         Y
Sbjct: 223 ILQAGLPANQTAVLGSDVEFHCKVYSDAQPHI---QWLKHVEVNGSKVGPD-----GTPY 274

Query: 335 FPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 374
                             L    +   DAG Y+C   + +
Sbjct: 275 VTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSI 314

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 55.8 bits (134), Expect = 2e-08
 Identities = 20/111 (18%), Positives = 28/111 (25%), Gaps = 14/111 (12%)

Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYV-------QDRLV 239
            R       P +    L       D+   C       P  +W K   V            
Sbjct: 220 HRPILQAGLPANQTAVLGS-----DVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPY 274

Query: 240 ANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
             ++              L +++    ED G Y C A N  G     S  L
Sbjct: 275 VTVLKTAGANTTDKELEVLSLHNV-TFEDAGEYTCLAGNSIGF-SHHSAWL 323

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score =  119 bits (300), Expect = 4e-30
 Identities = 48/311 (15%), Positives = 86/311 (27%), Gaps = 43/311 (13%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
           P       ++V +  +      +TL C + G    S EW              I P    
Sbjct: 5   PVIEPSGPELVVEPGE-----TVTLRCVSNG----SVEWDGP-----------ISPYWTL 44

Query: 523 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQ 582
                G  L   +    ++ G+Y C       +  + ++ L   ++ +            
Sbjct: 45  DPESPGSTLTTRNA-TFKNTGTYRCTELEDPMAGST-TIHL---YVKDPAHSWNLLAQEV 99

Query: 583 --NWGKAMF--CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGN 638
               G+     C         +    R+     V      F S          + +D+  
Sbjct: 100 TVVEGQEAVLPCLITDPALKDSVSLMREGGR-QVLRKTVYFFSPWRGFIIRKAKVLDSNT 158

Query: 639 YSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFG 698
           Y C     V+          LKV         + P    +        G+  ++ C A  
Sbjct: 159 YVCKTM--VNGRESTSTGIWLKVNR----VHPEPPQIKLEPSKLVRIRGEAAQIVCSATN 212

Query: 699 YPVPSYNWTRRGSPLPR-------NAYFENFNRILTIPNVKVEDQGEYICRASNDRSALE 751
             V      +RG               +    R L++  V  +D G Y C ASND     
Sbjct: 213 AEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRT 272

Query: 752 SSVTISIQAEP 762
           +++   +    
Sbjct: 273 ATMNFQVVESH 283

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 90.0 bits (223), Expect = 6e-20
 Identities = 30/217 (13%), Positives = 53/217 (24%), Gaps = 32/217 (14%)

Query: 603 WARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF 662
           W     P +  + +    S    L        + G Y C                 L V 
Sbjct: 34  WDGPISPYWTLDPE----SPGSTLTTRNATFKNTGTYRCTELEDPMAGSTT---IHLYV- 85

Query: 663 PHSNFQQLKFPNNFPKTFPEAP-----KAGDKVRLECVAFGYPV-PSYNWTRRGSPLP-- 714
                       +   ++           G +  L C+     +  S +  R G      
Sbjct: 86  -----------KDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLR 134

Query: 715 RNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESS-----VTISIQAEPNFTIPLT 769
           +  YF +  R   I   KV D   Y+C+   +     S+     V       P   +  +
Sbjct: 135 KTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPS 194

Query: 770 DKHMDNQADLTWTCEAFGVPDVTYSWFRNGELGHQMT 806
                        C A           + G+   ++ 
Sbjct: 195 KLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIP 231

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 87.7 bits (217), Expect = 4e-19
 Identities = 42/288 (14%), Positives = 76/288 (26%), Gaps = 45/288 (15%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           P       ++V +  +      +TL C + G    S EW              I P    
Sbjct: 5   PVIEPSGPELVVEPGE-----TVTLRCVSNG----SVEWDGP-----------ISPYWTL 44

Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQ 309
                G  L   +    ++ G+Y C       +  + ++ L   ++ +            
Sbjct: 45  DPESPGSTLTTRNA-TFKNTGTYRCTELEDPMAGST-TIHL---YVKDPAHSWNLLAQEV 99

Query: 310 --NWGKAMF--CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGN 365
               G+     C         +    R+     V      F S          + +D+  
Sbjct: 100 TVVEGQEAVLPCLITDPALKDSVSLMREGGR-QVLRKTVYFFSPWRGFIIRKAKVLDSNT 158

Query: 366 YSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFG 425
           Y C     V+          LKV         + P    +        G+  ++ C A  
Sbjct: 159 YVCKTM--VNGRESTSTGIWLKVNR----VHPEPPQIKLEPSKLVRIRGEAAQIVCSATN 212

Query: 426 YPVPSYNWTRRGSPLPR-------NAYFENFNRILTIPNVKMR--GPY 464
             V      +RG               +    R L++  V  +  G Y
Sbjct: 213 AEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIY 260

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 83.5 bits (206), Expect = 1e-17
 Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 7/118 (5%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRAS 744
           + G+ V L CV+ G    S  W    SP       E+    LT  N   ++ G Y C   
Sbjct: 17  EPGETVTLRCVSNG----SVEWDGPISPYWT-LDPESPGSTLTTRNATFKNTGTYRCTEL 71

Query: 745 NDRSALESSVTISIQAEPN-FTIPLTDKHMDNQADLTWTCEA-FGVPDVTYSWFRNGE 800
            D  A  +++ + ++   + + +   +  +    +    C         + S  R G 
Sbjct: 72  EDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGG 129

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 62.3 bits (151), Expect = 1e-10
 Identities = 32/192 (16%), Positives = 51/192 (26%), Gaps = 24/192 (12%)

Query: 192 FIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKR 250
           +     +V     +     +  L C         S    +E                   
Sbjct: 92  WNLLAQEVTVVEGQ-----EAVLPCLITDPALKDSVSLMREG--------GRQVLRKTVY 138

Query: 251 FTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEF--NLKRAPEIGN 308
           F       II    +V D  +Y CK         S  + L    +      +K  P    
Sbjct: 139 FFSPWRGFIIRKA-KVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLV 197

Query: 309 QNWG-KAMF-CDPPTNYPGVNYYWARD----YFPNFVEEDKRVFVSYDGALYFSALEQID 362
           +  G  A   C   TN         +            + +  +     AL  +A++  D
Sbjct: 198 RIRGEAAQIVCSA-TNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQD 256

Query: 363 AGNYSCNVQSKV 374
           AG YSC   + V
Sbjct: 257 AGIYSCVASNDV 268

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 55.3 bits (133), Expect = 2e-08
 Identities = 21/136 (15%), Positives = 44/136 (32%), Gaps = 17/136 (12%)

Query: 155 FICEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITL 214
           ++C+  +       N   +   G+ ++     P  P    +P+ +V    +        +
Sbjct: 159 YVCKTMV-------NGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEA-----AQI 206

Query: 215 SCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHC 274
            C A           K     D  +   ++      +      L +N     +D G Y C
Sbjct: 207 VCSATNAEVGFNVILKRG---DTKLEIPLNSDFQDNYYKKVRALSLNAV-DFQDAGIYSC 262

Query: 275 KASNKFGSIISESVQL 290
            ASN  G+  + ++  
Sbjct: 263 VASNDVGT-RTATMNF 277

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score =  119 bits (299), Expect = 9e-30
 Identities = 56/319 (17%), Positives = 88/319 (27%), Gaps = 44/319 (13%)

Query: 465 FIKQPTDVVFDLSKRSILND-ITLSCYAGGYPNPSY-----EWFKEDYVQDRLVANLIDP 518
            ++ PT V         L D +TL CY               W +        V +    
Sbjct: 3   VVQAPTQV------PGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQG 56

Query: 519 LS------------DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFG 566
            S                 L   +L +    +VED G+Y C          S  + L   
Sbjct: 57  PSYSESKRLEFVAARLGAELRNASLRMFG-LRVEDEGNYTCLFVTFPQGSRSVDIWLRVL 115

Query: 567 FIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVF----VSY 622
              +   +               C      P     W  D            F    V+ 
Sbjct: 116 AKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTV 175

Query: 623 DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPE 682
                     Q+D  N +C V+ +  +  +      L V          +P     +  +
Sbjct: 176 TSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTV-NLTV---------YYPPEVSISGYD 225

Query: 683 AP--KAGDKVRLECVAFGYPVP-SYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEY 739
                  ++  L C A   P P  YNW+    PLP  A  +     L I  V        
Sbjct: 226 NNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQG--AQLLIRPVDKPINTTL 283

Query: 740 ICRASNDRSALESSVTISI 758
           IC  +N   A ++ +T+ +
Sbjct: 284 ICNVTNALGARQAELTVQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 92.5 bits (229), Expect = 1e-20
 Identities = 35/220 (15%), Positives = 62/220 (28%), Gaps = 23/220 (10%)

Query: 593 PTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGR 652
              +      ++      FV       +  + +L    L   D GNY+C   +     G 
Sbjct: 49  AVFHQTQGPSYSESKRLEFVAARLGAELR-NASLRMFGLRVEDEGNYTCLFVTFPQ--GS 105

Query: 653 NGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF-GYPVPSYNWTRRGS 711
                 L+V        L  P N  +               CV+  G P     W     
Sbjct: 106 RSVDIWLRV--------LAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLG 157

Query: 712 PLPRNAYFENFNR-------ILTIPNVKVEDQGEYICRASND--RSALESSVTISIQAEP 762
            +P  +    F         +  +      D     C+  ++        +V +++   P
Sbjct: 158 GMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPP 217

Query: 763 NFTI-PLTDKHMDNQADLTWTCEAFGVP-DVTYSWFRNGE 800
             +I    +     Q + T TC+A   P    Y+W     
Sbjct: 218 EVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMG 257

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 90.9 bits (225), Expect = 4e-20
 Identities = 51/292 (17%), Positives = 77/292 (26%), Gaps = 44/292 (15%)

Query: 192 FIKQPTDVVFDLSKRSILND-ITLSCYAGGYPNPSY-----EWFKEDYVQDRLVANLIDP 245
            ++ PT V         L D +TL CY               W +        V +    
Sbjct: 3   VVQAPTQV------PGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQG 56

Query: 246 LS------------DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFG 293
            S                 L   +L +    +VED G+Y C          S  + L   
Sbjct: 57  PSYSESKRLEFVAARLGAELRNASLRMFG-LRVEDEGNYTCLFVTFPQGSRSVDIWLRVL 115

Query: 294 FIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVF----VSY 349
              +   +               C      P     W  D            F    V+ 
Sbjct: 116 AKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTV 175

Query: 350 DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPE 409
                     Q+D  N +C V+ +  +  +      L V          +P     +  +
Sbjct: 176 TSLWILVPSSQVDGKNVTCKVEHESFEKPQLLT-VNLTV---------YYPPEVSISGYD 225

Query: 410 AP--KAGDKVRLECVAFGYPVP-SYNWTRRGSPLPRNAYFENFNRILTIPNV 458
                  ++  L C A   P P  YNW+    PLP  A  +     L I  V
Sbjct: 226 NNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQ--GAQLLIRPV 275

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 57.8 bits (139), Expect = 5e-09
 Identities = 31/190 (16%), Positives = 54/190 (28%), Gaps = 21/190 (11%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
           P    +   V                C + GG P     W  +       + N       
Sbjct: 118 PQNTAEVQKVQLTGEPV-----PMARCVSTGGRPPAQITWHSDL----GGMPNTSQVPGF 168

Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI-ISESVQLAFGFIGEFNLKRAPEIG 307
              T++  +L I  P    D  +  CK  ++        +V L   +  E ++       
Sbjct: 169 LSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNW 228

Query: 308 NQNWGKAMF-CDPPTNYPGVNYYWARD--YFPNFVEEDKRVFVSYDGALYFSALEQIDAG 364
                +A   CD  +N     Y W+      P F        V+    L    +++    
Sbjct: 229 YLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFA-------VAQGAQLLIRPVDKPINT 281

Query: 365 NYSCNVQSKV 374
              CNV + +
Sbjct: 282 TLICNVTNAL 291

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 52.0 bits (124), Expect = 3e-07
 Identities = 18/82 (21%), Positives = 26/82 (31%), Gaps = 15/82 (18%)

Query: 210 NDITLSCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 268
           N+ TL+C A   P P  Y W                PL        G  L+I  P     
Sbjct: 233 NEATLTCDARSNPEPTGYNWSTTM-----------GPLPP-FAVAQGAQLLIR-PVDKPI 279

Query: 269 RGSYHCKASNKFGSIISESVQL 290
             +  C  +N  G+     + +
Sbjct: 280 NTTLICNVTNALGA-RQAELTV 300

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score =  117 bits (295), Expect = 4e-29
 Identities = 47/335 (14%), Positives = 87/335 (25%), Gaps = 46/335 (13%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSC-YAGGYPNPSY---EWFKEDYVQDRLVANL--- 515
              ++    +   +       D+ L C +A   P+       W K      + VA     
Sbjct: 15  SQVVQVNDSMYGFIGT-----DVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPS 69

Query: 516 ----IDPLSDKRFTLSG-----GNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL--- 563
               +     +R          G + ++   ++ED G Y C+ +          + L   
Sbjct: 70  MGVSVLAPYRERVEFLRPSFTDGTIRLSR-LELEDEGVYICEFATFPTGNRESQLNLTVM 128

Query: 564 --AFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEE---DKRV 618
                +I         + G  +      C      P     W          +   +   
Sbjct: 129 AKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNG 188

Query: 619 FVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF--PHSNFQQLKFPNNF 676
            V+           +    + +C V   +     +     L V   P    +        
Sbjct: 189 TVTVISRYRLVPSREAHQQSLACIVNYHMDRFKES---LTLNVQYEPEVTIEGFD----- 240

Query: 677 PKTFPEAPKAGDKVRLECVAFGYPVPS-YNWTRRGSPLPRNAYFENFNRILTIPNVKVED 735
                        V+L C A   P  + Y+WT     LP+    +N   +     +    
Sbjct: 241 ----GNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQN-RTLFFKGPINYSL 295

Query: 736 QGEYICRASNDRSALESSVTISIQAEPNFTIPLTD 770
            G YIC A+N        V ++I            
Sbjct: 296 AGTYICEATNPIGTRSGQVEVNITEAAALEHHHHH 330

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 92.1 bits (228), Expect = 2e-20
 Identities = 38/187 (20%), Positives = 55/187 (29%), Gaps = 14/187 (7%)

Query: 623 DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPE 682
           DG +  S LE  D G Y C   +    TG       L V                    +
Sbjct: 91  DGTIRLSRLELEDEGVYICEFAT--FPTGNRESQLNLTVMAKPTNWIEGTQ---AVLRAK 145

Query: 683 APKAGDKVRLEC-VAFGYPVPSYNWTRRGSPLPRNAYFENFNR------ILTIPNVKVED 735
             +    +   C  A G P    +W  R           N N          +   +   
Sbjct: 146 KGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAH 205

Query: 736 QGEYICRASNDRSALESSVTISIQAEPNFTI-PLTDKHMDNQADLTWTCEAFGVPDVT-Y 793
           Q    C  +      + S+T+++Q EP  TI          + D+  TC+A   P  T Y
Sbjct: 206 QQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEY 265

Query: 794 SWFRNGE 800
            W     
Sbjct: 266 HWTTLNG 272

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 86.0 bits (212), Expect = 2e-18
 Identities = 39/297 (13%), Positives = 76/297 (25%), Gaps = 46/297 (15%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSC-YAGGYPNPSY---EWFKEDYVQDRLVANL--- 242
              ++    +   +       D+ L C +A   P+       W K      + VA     
Sbjct: 15  SQVVQVNDSMYGFIGT-----DVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPS 69

Query: 243 ----IDPLSDKRFTLSG-----GNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL--- 290
               +     +R          G + ++   ++ED G Y C+ +          + L   
Sbjct: 70  MGVSVLAPYRERVEFLRPSFTDGTIRLSR-LELEDEGVYICEFATFPTGNRESQLNLTVM 128

Query: 291 --AFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEE---DKRV 345
                +I         + G  +      C      P     W          +   +   
Sbjct: 129 AKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNG 188

Query: 346 FVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF--PHSNFQQLKFPNNF 403
            V+           +    + +C V   +     +     L V   P    +        
Sbjct: 189 TVTVISRYRLVPSREAHQQSLACIVNYHMDRFKES---LTLNVQYEPEVTIEGFD----- 240

Query: 404 PKTFPEAPKAGDKVRLECVAFGYPVPS-YNWTRRGSPLPRNAYFENFNRILTIPNVK 459
                        V+L C A   P  + Y+WT     LP+    +N   +     + 
Sbjct: 241 ----GNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQN-RTLFFKGPIN 292

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 59.4 bits (143), Expect = 1e-09
 Identities = 32/195 (16%), Positives = 53/195 (27%), Gaps = 28/195 (14%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCY-AGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
           P    + T  V    K      +  +C  A G P     W        +  A   +  + 
Sbjct: 131 PTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRL----KGEAEYQEIRNP 186

Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEI-- 306
                      +   R+   + S  C  +        ES+ L        N++  PE+  
Sbjct: 187 NGTVTVISRYRLVPSRE-AHQQSLACIVNYHMDRF-KESLTL--------NVQYEPEVTI 236

Query: 307 --GNQNWGKA-----MFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALE 359
              + NW        + C    N P   Y+W            K V        +   + 
Sbjct: 237 EGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGS----LPKGVEAQNRTLFFKGPIN 292

Query: 360 QIDAGNYSCNVQSKV 374
              AG Y C   + +
Sbjct: 293 YSLAGTYICEATNPI 307

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 54.8 bits (131), Expect = 5e-08
 Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 14/82 (17%)

Query: 210 NDITLSCYAGGYPNPS-YEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 268
            D+ L+C A   P  + Y W   +             L           L    P     
Sbjct: 248 MDVKLTCKADANPPATEYHWTTLN-----------GSLPK-GVEAQNRTLFFKGPINYSL 295

Query: 269 RGSYHCKASNKFGSIISESVQL 290
            G+Y C+A+N  G+  S  V++
Sbjct: 296 AGTYICEATNPIGT-RSGQVEV 316

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score =  116 bits (291), Expect = 1e-28
 Identities = 45/297 (15%), Positives = 81/297 (27%), Gaps = 32/297 (10%)

Query: 483 NDITLSCYAGGYPNPSYEW-FKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 541
              +  C        S+ +  K++ V    +     PL      +  G+L I +    + 
Sbjct: 45  EPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPL---NRRVKNGDLWIANYTSNDS 101

Query: 542 RGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNY 601
              Y C  + K G  +   V+           +      +  +G  ++C         N 
Sbjct: 102 HRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNI 161

Query: 602 YWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC---NVQSKVSDTGRNGPFFP 658
            W ++     +  D   +      L     E  D+G Y C       ++ +         
Sbjct: 162 TWYKNNQE--LIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKI 219

Query: 659 LKVFPHSNFQQLKFPNNFPKTFPEAPKA--GDKVRLECVAFGYPVP----SYNWTRRG-- 710
           L V P          + F            G+   + C A    +       +W      
Sbjct: 220 LTVIPSQ-------DHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGW 272

Query: 711 -SPLPRNAYFENFNR------ILTIPNVKVEDQGE-YICRASNDRSALESSVTISIQ 759
              L    Y    +        L   NV  E  G  Y CR  N       + T+ ++
Sbjct: 273 IIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVLE 329

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 99.1 bits (246), Expect = 1e-22
 Identities = 34/231 (14%), Positives = 63/231 (27%), Gaps = 33/231 (14%)

Query: 592 PPTNYPGVNYYWARD------YFPNFVEEDKRVFVSYDGALYFSALEQIDAGN-YSCNVQ 644
           PP     +++ +                      V  +G L+ +     D+   Y C V 
Sbjct: 52  PPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVK-NGDLWIANYTSNDSHRRYLCTVT 110

Query: 645 SKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC-VAFGYPVPS 703
           +K  D  +        +           P+  P+T+         + L C + +     +
Sbjct: 111 TKNGDCVQG--IVRSHIRKP--------PSCIPETYELGTHDKYGIDLYCGILYAKHYNN 160

Query: 704 YNWTRRGSPLP-RNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEP 762
             W +    L      +    + L I N ++ED G Y C    D   +++ + +S     
Sbjct: 161 ITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKIL 220

Query: 763 NFTIPLTDKHMDNQA---------DLTWTCEAFGVP----DVTYSWFRNGE 800
                   +                   TC A        DV   W     
Sbjct: 221 TVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSG 271

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 92.2 bits (228), Expect = 2e-20
 Identities = 38/271 (14%), Positives = 70/271 (25%), Gaps = 31/271 (11%)

Query: 210 NDITLSCYAGGYPNPSYEW-FKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 268
              +  C        S+ +  K++ V    +     PL      +  G+L I +    + 
Sbjct: 45  EPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPL---NRRVKNGDLWIANYTSNDS 101

Query: 269 RGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNY 328
              Y C  + K G  +   V+           +      +  +G  ++C         N 
Sbjct: 102 HRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNI 161

Query: 329 YWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC---NVQSKVSDTGRNGPFFP 385
            W ++     +  D   +      L     E  D+G Y C       ++ +         
Sbjct: 162 TWYKNNQE--LIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKI 219

Query: 386 LKVFPHSNFQQLKFPNNFPKTFPEAPKA--GDKVRLECVAFGYPVP----SYNWTRRG-- 437
           L V P          + F            G+   + C A    +       +W      
Sbjct: 220 LTVIPSQ-------DHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGW 272

Query: 438 -SPLPRNAYFENFNR------ILTIPNVKMR 461
              L    Y    +        L   NV   
Sbjct: 273 IIGLDFGVYSILTSSGGITEATLYFENVTEE 303

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 74.9 bits (183), Expect = 1e-14
 Identities = 25/152 (16%), Positives = 49/152 (32%), Gaps = 15/152 (9%)

Query: 663 PHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSY---------NWTRRGSP- 712
           P  + + L     F  T  +    G+    +C      + S+         NW + G   
Sbjct: 20  PAKDSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTR 79

Query: 713 LPRNAYFENFNRILTIPNVKVED-QGEYICRASNDR-SALESSVTISIQAEPNFTIPLTD 770
            P N   +N +  L I N    D    Y+C  +      ++  V   I+  P+      +
Sbjct: 80  RPLNRRVKNGD--LWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYE 137

Query: 771 KHMDNQADLTWTCEAF-GVPDVTYSWFRNGEL 801
               ++  +   C           +W++N + 
Sbjct: 138 LGTHDKYGIDLYCGILYAKHYNNITWYKNNQE 169

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 73.3 bits (179), Expect = 4e-14
 Identities = 53/317 (16%), Positives = 89/317 (28%), Gaps = 78/317 (24%)

Query: 390 PHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSY---------NWTRRGSP- 439
           P  + + L     F  T  +    G+    +C      + S+         NW + G   
Sbjct: 20  PAKDSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTR 79

Query: 440 LPRNAYFENFNRILTIPNVK----------------------------MRGPYFIKQPTD 471
            P N   +N +  L I N                               + P  I +  +
Sbjct: 80  RPLNRRVKNGD--LWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYE 137

Query: 472 VVFDLSKRSILNDITLSC-YAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGN 530
           +            I L C         +  W+K +          +      +++ SG N
Sbjct: 138 LGTHDKYG-----IDLYCGILYAKHYNNITWYKNN--------QELII-DGTKYSQSGQN 183

Query: 531 LIINDPRQVEDRGSYHCKASNKFGSI---ISESVQLAFGFIGEFNLKRAPEIGNQN---- 583
           LII++P ++ED G Y C        I   I  S       +      R   I +      
Sbjct: 184 LIIHNP-ELEDSGRYDCYVHYDDVRIKNDIVVSRCKIL-TVIPSQDHRFKLILDPKINVT 241

Query: 584 WGKA--MFC---DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSY-------DGALYFSAL 631
            G+   + C           V   W        +  D  V+          +  LYF  +
Sbjct: 242 IGEPANITCTAVSTSLLVDDVLIDWENPSGW-IIGLDFGVYSILTSSGGITEATLYFENV 300

Query: 632 EQIDAGN-YSCNVQSKV 647
            +   GN Y+C   +  
Sbjct: 301 TEEYIGNTYTCRGHNYY 317

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 45.2 bits (106), Expect = 6e-05
 Identities = 15/111 (13%), Positives = 32/111 (28%), Gaps = 13/111 (11%)

Query: 190 PYFIKQPTDVVFDLSKRSILN-----DITLSCYAGGYPNP----SYEWFKEDYVQDRLVA 240
              +    D  F L     +N        ++C A            +W         L  
Sbjct: 219 ILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDF 278

Query: 241 NLIDPLSDKRFTLSGGNLIINDPRQVEDRGS-YHCKASNKFGSIISESVQL 290
            +   L+     ++   L   +  + E  G+ Y C+  N +    + +  +
Sbjct: 279 GVYSILTS-SGGITEATLYFENVTE-EYIGNTYTCRGHNYYFD-KTLTTTV 326

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score =  115 bits (289), Expect = 4e-28
 Identities = 54/402 (13%), Positives = 109/402 (27%), Gaps = 111/402 (27%)

Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPL---------------------PRNAYFENFN 450
           K GD V L C A       ++W                             R + ++  N
Sbjct: 7   KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 66

Query: 451 RILTIPNVKM--RGPYF------IKQPTDVVFDLSKRSILN-----DITLSCYAGGYPNP 497
             L I N+K+     Y        ++   +VF L+  S  +      +TL+  +    +P
Sbjct: 67  FPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSP 126

Query: 498 SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI- 556
           S +                      +    G  L ++   +++D G++ C        + 
Sbjct: 127 SVQCRSP----------------RGKNIQGGKTLSVSQL-ELQDSGTWTCTVLQNQKKVE 169

Query: 557 ------------------ISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPG 598
                               E  Q+ F F   F +++    G   W         ++   
Sbjct: 170 FKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQA---ERASSSKSW 226

Query: 599 VNYYWARDYFPNF-VEEDKRVFVSYDGALYFS----ALEQIDAGNYSCNVQSKVSDTGRN 653
           + +           V +D ++ +     L+ +      +   +GN +  +++K    G+ 
Sbjct: 227 ITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKT---GKL 283

Query: 654 GPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPS--YNWTRRGS 711
                L V   +                       +  L C  +G   P    +      
Sbjct: 284 HQEVNLVVMRAT---------------------QLQKNLTCEVWGPTSPKLMLSLKLENK 322

Query: 712 PLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESS 753
               +              V   + G + C  S+    L  S
Sbjct: 323 EAKVSKR-------EKAVWVLNPEAGMWQCLLSDSGQVLLES 357

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 97.2 bits (241), Expect = 8e-22
 Identities = 52/364 (14%), Positives = 92/364 (25%), Gaps = 73/364 (20%)

Query: 484 DITLSCYAGGYPNPSYEWFKED---------YVQDRLVANLIDPLSDKRFTLSGGN--LI 532
            + L+C A    +  + W   +             +  + L D    +R     GN  LI
Sbjct: 11  TVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLI 70

Query: 533 INDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKA--MFC 590
           I +  ++ED  +Y C+  ++      E VQL       F L    +  +   G++  +  
Sbjct: 71  IKNL-KIEDSDTYICEVEDQ-----KEEVQL-----LVFGLTANSDT-HLLQGQSLTLTL 118

Query: 591 DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDT 650
           +        +         N               L  S LE  D+G ++C V       
Sbjct: 119 ES-PPGSSPSVQCRSPRGKNIQG---------GKTLSVSQLELQDSGTWTCTVLQNQKKV 168

Query: 651 GRNGPFFPLKVFPHSNFQQLKFPN-------NFPKTFPEAPKAGDKVRLECVAFGYPVP- 702
                   + V        + +         +FP  F    K      L   A       
Sbjct: 169 EFK---IDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVE-KLTGSGELWWQAERASSSK 224

Query: 703 ---SYNWTRRGSPLPRNAYFENFNR--------ILTIPNVKVEDQGEYICRASNDRSALE 751
              +++   +   + R                  L     +    G            L 
Sbjct: 225 SWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLH 284

Query: 752 SSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGV--PDVTYSWFRNGELGHQMTDLL 809
             V + +                 Q     TCE +G   P +  S     +         
Sbjct: 285 QEVNLVVMRAT-------------QLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREK 331

Query: 810 LKAV 813
              V
Sbjct: 332 AVWV 335

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 79.5 bits (195), Expect = 6e-16
 Identities = 55/393 (13%), Positives = 108/393 (27%), Gaps = 82/393 (20%)

Query: 211 DITLSCYAGGYPNPSYEWFKED---------YVQDRLVANLIDPLSDKRFTLSGGN--LI 259
            + L+C A    +  + W   +             +  + L D    +R     GN  LI
Sbjct: 11  TVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLI 70

Query: 260 INDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKA--MFC 317
           I +  ++ED  +Y C+  ++      E VQL       F L    +  +   G++  +  
Sbjct: 71  IKNL-KIEDSDTYICEVEDQ-----KEEVQL-----LVFGLTANSDT-HLLQGQSLTLTL 118

Query: 318 DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDT 377
           +        +         N               L  S LE  D+G ++C V       
Sbjct: 119 E-SPPGSSPSVQCRSPRGKNIQG---------GKTLSVSQLELQDSGTWTCTVLQNQKKV 168

Query: 378 GRNGPFFPLKVFPHSNFQQLKFPN-------NFPKTFPEAPKAGDKVRLECVAFGYPVP- 429
                   + V        + +         +FP  F    K      L   A       
Sbjct: 169 EFK---IDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVE-KLTGSGELWWQAERASSSK 224

Query: 430 ---SYNWTRRGSPLPRNAYF------ENFNRILTIPNVKMR----GPY-----FIKQPTD 471
              +++   +   + R          +     LT+P    +    G              
Sbjct: 225 SWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLH 284

Query: 472 VVFDLSKRSIL-NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGN 530
              +L           L+C   G  +P      +              L +K   +S   
Sbjct: 285 QEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLK--------------LENKEAKVSKRE 330

Query: 531 LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
             +       + G + C  S+    ++  ++++
Sbjct: 331 KAVW--VLNPEAGMWQCLLSDSGQVLLESNIKV 361

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 76.0 bits (186), Expect = 8e-15
 Identities = 41/352 (11%), Positives = 87/352 (24%), Gaps = 92/352 (26%)

Query: 339 VEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLK 398
            +  + ++   +  L    L+  D+  Y C V+ +  +       F L     ++  Q  
Sbjct: 55  ADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQL--LVFGLTANSDTHLLQ-- 110

Query: 399 FPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNV 458
                          G  + L   +     PS          PR    +   + L++  +
Sbjct: 111 ---------------GQSLTLTLESPPGSSPSVQCRS-----PRGKNIQG-GKTLSVSQL 149

Query: 459 KM--RGPY---------------------FIKQPTDV------------VFDLSKRSILN 483
           ++   G +                     F K  + V                +   +  
Sbjct: 150 ELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTG 209

Query: 484 DITLSCYAGGYPNP----SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQV 539
              L   A    +     +++   ++    R+  +    +  K   L     +     Q 
Sbjct: 210 SGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKK---LPLHLTLPQALPQY 266

Query: 540 EDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPP-TNYPG 598
              G+       K G +             E NL        Q     + C+      P 
Sbjct: 267 AGSGNLTLALEAKTGKLHQ-----------EVNLVVMRATQLQK---NLTCEVWGPTSPK 312

Query: 599 VNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDT 650
           +      +        +K   VS         +   +AG + C +       
Sbjct: 313 LMLSLKLE--------NKEAKVSKR--EKAVWVLNPEAGMWQCLLSDSGQVL 354

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score =  111 bits (279), Expect = 5e-28
 Identities = 50/196 (25%), Positives = 72/196 (36%), Gaps = 35/196 (17%)

Query: 596 YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQ----SKVSDTG 651
           +P V Y W +         +K +       L F+A+   DAG Y C V      + S   
Sbjct: 45  HPFVQYQWFKM--------NKEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWS 96

Query: 652 RNGPFFPLKVF--PHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSY 704
           +      L V   P S  + +   +         P       G  + L+CVA G P+P Y
Sbjct: 97  Q------LDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHY 150

Query: 705 NWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNF 764
            W +   PL          ++  +P V +E QG Y C   NDR + +S     I  E N 
Sbjct: 151 QWFKNELPLTHET-----KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNN 205

Query: 765 TIPLTDKHMDNQADLT 780
                  H DN+   T
Sbjct: 206 L-----GHPDNKEQTT 216

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score =  104 bits (261), Expect = 1e-25
 Identities = 32/147 (21%), Positives = 48/147 (32%), Gaps = 32/147 (21%)

Query: 681 PEAPK-----------AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIP 729
           P   K           AG  V+L C A G+P   Y W +    +P           L   
Sbjct: 16  PRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN-----TSELIFN 70

Query: 730 NVKVEDQGEYICRASNDR-SALESSVTISIQA---------------EPNFTIPLTDKHM 773
            V V+D G Y+CR +N+          + +                 +    +  T + +
Sbjct: 71  AVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKL 130

Query: 774 DNQADLTWTCEAFGVPDVTYSWFRNGE 800
              + L   C A G P   Y WF+N  
Sbjct: 131 MPGSTLVLQCVAVGSPIPHYQWFKNEL 157

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 89.2 bits (221), Expect = 3e-20
 Identities = 37/206 (17%), Positives = 62/206 (30%), Gaps = 49/206 (23%)

Query: 186 IPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDP 245
           +PRG      P               + L C A G+P   Y+WFK +             
Sbjct: 15  VPRGSKITVNPESKAVLAG-----QFVKLCCRATGHPFVQYQWFKMN-----------KE 58

Query: 246 LSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPE 305
           + +         LI N    V+D G Y C+ +N F    S+  QL    + +        
Sbjct: 59  IPNGN----TSELIFNAV-HVKDAGFYVCRVNNNFTFEFSQWSQL---DVCDIPESFQRS 110

Query: 306 IGNQNWGKAMFCDPPTN-----------------YPGVNYYWARDYFPNFVEEDKRVFVS 348
           +   +  K   C  PT+                  P  +Y W ++        +  +   
Sbjct: 111 VDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKN--------ELPLTHE 162

Query: 349 YDGALYFSALEQIDAGNYSCNVQSKV 374
                    ++    G Y C+V +  
Sbjct: 163 TKKLYMVPYVDLEHQGTYWCHVYNDR 188

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 88.4 bits (219), Expect = 5e-20
 Identities = 37/209 (17%), Positives = 57/209 (27%), Gaps = 79/209 (37%)

Query: 408 PEAPK-----------AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIP 456
           P   K           AG  V+L C A G+P   Y W +    +P           L   
Sbjct: 16  PRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN-----TSELIFN 70

Query: 457 NVKM------------------------------------------RGPYFIKQPTDVVF 474
            V +                                                 +PT    
Sbjct: 71  AVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKL 130

Query: 475 DLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIIN 534
                     + L C A G P P Y+WFK +            PL+ +    +    ++ 
Sbjct: 131 MPGS-----TLVLQCVAVGSPIPHYQWFKNE-----------LPLTHE----TKKLYMVP 170

Query: 535 DPRQVEDRGSYHCKASNKFGSIISESVQL 563
               +E +G+Y C   N   S  S+ V++
Sbjct: 171 YV-DLEHQGTYWCHVYNDRDSQDSKKVEI 198

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 86.1 bits (213), Expect = 3e-19
 Identities = 37/222 (16%), Positives = 67/222 (30%), Gaps = 53/222 (23%)

Query: 443 NAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWF 502
           +++  + +    +P    RG      P               + L C A G+P   Y+WF
Sbjct: 3   SSHHHHHHSSGLVP----RGSKITVNPESKAVLAG-----QFVKLCCRATGHPFVQYQWF 53

Query: 503 KEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQ 562
           K +             + +         LI N    V+D G Y C+ +N F    S+  Q
Sbjct: 54  KMN-----------KEIPNGN----TSELIFNAV-HVKDAGFYVCRVNNNFTFEFSQWSQ 97

Query: 563 LAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTN-----------------YPGVNYYWAR 605
           L    + +        +   +  K   C  PT+                  P  +Y W +
Sbjct: 98  L---DVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFK 154

Query: 606 DYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 647
           +        +  +            ++    G Y C+V +  
Sbjct: 155 N--------ELPLTHETKKLYMVPYVDLEHQGTYWCHVYNDR 188

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 77.6 bits (191), Expect = 3e-16
 Identities = 36/155 (23%), Positives = 55/155 (35%), Gaps = 32/155 (20%)

Query: 323 YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQ----SKVSDTG 378
           +P V Y W +         +K +       L F+A+   DAG Y C V      + S   
Sbjct: 45  HPFVQYQWFKM--------NKEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWS 96

Query: 379 RNGPFFPLKVF--PHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSY 431
           +      L V   P S  + +   +         P       G  + L+CVA G P+P Y
Sbjct: 97  Q------LDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHY 150

Query: 432 NWTRRGSPLPRNAYFENFNRILTIPNVKMR--GPY 464
            W +   PL          ++  +P V +   G Y
Sbjct: 151 QWFKNELPLTHET-----KKLYMVPYVDLEHQGTY 180

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 63.4 bits (154), Expect = 2e-11
 Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 21/101 (20%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
                +PT              + L C A G P P Y+WFK +            PL+ +
Sbjct: 119 LQICVEPTSQKLMPGS-----TLVLQCVAVGSPIPHYQWFKNE-----------LPLTHE 162

Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
               +    ++     +E +G+Y C   N   S  S+ V++
Sbjct: 163 ----TKKLYMVPYV-DLEHQGTYWCHVYNDRDSQDSKKVEI 198

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score =  113 bits (283), Expect = 8e-28
 Identities = 46/321 (14%), Positives = 87/321 (27%), Gaps = 44/321 (13%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
           P       ++V           +TL C   G    S EW         L ++        
Sbjct: 5   PVIEPSVPELVVKPGA-----TVTLRCVGNG----SVEWDGPPSPHWTLYSDG------- 48

Query: 523 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGE----FNLKRAPE 578
               S   L  N+    ++ G+Y C          + ++ L   ++ +    +N+     
Sbjct: 49  ----SSSILSTNNA-TFQNTGTYRCTEPGDPLGGSA-AIHL---YVKDPARPWNVLAQEV 99

Query: 579 IGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGN 638
           +  ++    + C              R      +        S          + I + +
Sbjct: 100 VVFEDQDALLPCLLTDPVLEAGVSLVRVR-GRPLMRHTNYSFSPWHGFTIHRAKFIQSQD 158

Query: 639 YSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFG 698
           Y C+                LKV           P             G+  ++ C A  
Sbjct: 159 YQCSALMGGRKVMSIS--IRLKVQKVIPG----PPALTLVPAELVRIRGEAAQIVCSASS 212

Query: 699 YPVPSYNWTRRGS---PLPRNAYFEN----FNRILTIPNVKVEDQGEYICRASNDRSALE 751
             V    + +  +    +P+ + F N        L +  V  +  G Y C ASN +    
Sbjct: 213 VDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHS 272

Query: 752 SSVTISIQAEPNFTIPLTDKH 772
           +S+   +  E          H
Sbjct: 273 TSMFFRVV-ESAGNSHHHHHH 292

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 89.3 bits (221), Expect = 1e-19
 Identities = 29/202 (14%), Positives = 45/202 (22%), Gaps = 29/202 (14%)

Query: 613 EEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKF 672
                        L  +     + G Y C                 L V           
Sbjct: 40  PHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAA---IHLYV----------- 85

Query: 673 PNNFPKTFPEAPK-----AGDKVRLECVAFGYPV-PSYNWTRR-GSPLPRNA-YFENFNR 724
             +  + +    +           L C+     +    +  R  G PL R+  Y  +   
Sbjct: 86  -KDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWH 144

Query: 725 ILTIPNVKVEDQGEYICRASNDRSALESS-----VTISIQAEPNFTIPLTDKHMDNQADL 779
             TI   K     +Y C A      + S      V   I   P  T+   +         
Sbjct: 145 GFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAA 204

Query: 780 TWTCEAFGVP-DVTYSWFRNGE 800
              C A  V  +       N  
Sbjct: 205 QIVCSASSVDVNFDVFLQHNNT 226

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 81.9 bits (202), Expect = 4e-17
 Identities = 39/288 (13%), Positives = 76/288 (26%), Gaps = 45/288 (15%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           P       ++V           +TL C   G    S EW         L ++        
Sbjct: 5   PVIEPSVPELVVKPGA-----TVTLRCVGNG----SVEWDGPPSPHWTLYSDG------- 48

Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGE----FNLKRAPE 305
               S   L  N+    ++ G+Y C          + ++ L   ++ +    +N+     
Sbjct: 49  ----SSSILSTNNA-TFQNTGTYRCTEPGDPLGGSA-AIHL---YVKDPARPWNVLAQEV 99

Query: 306 IGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGN 365
           +  ++    + C              R      +        S          + I + +
Sbjct: 100 VVFEDQDALLPCLLTDPVLEAGVSLVRVR-GRPLMRHTNYSFSPWHGFTIHRAKFIQSQD 158

Query: 366 YSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFG 425
           Y C+                LKV           P             G+  ++ C A  
Sbjct: 159 YQCSALMGGRKVMSIS--IRLKVQKVIPG----PPALTLVPAELVRIRGEAAQIVCSASS 212

Query: 426 YPVPSYNWTRRGS---PLPRNAYFEN----FNRILTIPNVKMR--GPY 464
             V    + +  +    +P+ + F N        L +  V  +  G Y
Sbjct: 213 VDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNY 260

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 80.4 bits (198), Expect = 1e-16
 Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 7/117 (5%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRAS 744
           K G  V L CV  G    S  W    SP     Y +  + IL+  N   ++ G Y C   
Sbjct: 17  KPGATVTLRCVGNG----SVEWDGPPSP-HWTLYSDGSSSILSTNNATFQNTGTYRCTEP 71

Query: 745 NDRSALESSVTISIQAEPN-FTIPLTDKHMDNQADLTWTCEAFG-VPDVTYSWFRNG 799
            D     +++ + ++     + +   +  +    D    C     V +   S  R  
Sbjct: 72  GDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVR 128

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 63.8 bits (155), Expect = 4e-11
 Identities = 24/194 (12%), Positives = 43/194 (22%), Gaps = 28/194 (14%)

Query: 192 FIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKR 250
           +     +VV    +     D  L C              +                    
Sbjct: 92  WNVLAQEVVVFEDQ-----DALLPCLLTDPVLEAGVSLVRVR--------GRPLMRHTNY 138

Query: 251 FTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISES----VQLAFGFIGEFNLKRAPEI 306
                    I+   +      Y C A      ++S S    VQ          L  A  +
Sbjct: 139 SFSPWHGFTIHRA-KFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELV 197

Query: 307 GNQNWGKAMFC---DPPTNYPGVNYYWARDYFPNFVEEDKRV---FVSYDGALYFSALEQ 360
             +     + C       N    + +   +     + +              L    ++ 
Sbjct: 198 RIRGEAAQIVCSASSVDVN---FDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDF 254

Query: 361 IDAGNYSCNVQSKV 374
             AGNYSC   +  
Sbjct: 255 QHAGNYSCVASNVQ 268

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 51.5 bits (123), Expect = 4e-07
 Identities = 20/136 (14%), Positives = 40/136 (29%), Gaps = 17/136 (12%)

Query: 155 FICEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITL 214
           + C A +          +     + ++    IP  P     P ++V    +        +
Sbjct: 159 YQCSALM-------GGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEA-----AQI 206

Query: 215 SCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHC 274
            C A         + + +   +  +A                 L ++     +  G+Y C
Sbjct: 207 VCSASSVDVNFDVFLQHN---NTKLAIPQQSDFHNNRYQKVLTLNLDQV-DFQHAGNYSC 262

Query: 275 KASNKFGSIISESVQL 290
            ASN  G   S S+  
Sbjct: 263 VASNVQGK-HSTSMFF 277

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  112 bits (282), Expect = 3e-27
 Identities = 47/335 (14%), Positives = 85/335 (25%), Gaps = 51/335 (15%)

Query: 463 PYFIKQPTDVVFDLSKRSILN--DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 520
            +  +          +   L    +    +A   P  +  W K D  +       +    
Sbjct: 19  RFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSART------VPGEE 72

Query: 521 DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIG 580
           + R     G L +      ED G+Y C   N        S++L      +  L       
Sbjct: 73  ETRMWAQDGALWLLPA-LQEDSGTYVCTTRNASYCD-KMSIELRVFENTDAFLPFISYPQ 130

Query: 581 NQNWGK------AMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQI 634
                           +   +   V   W +D      + +K + V     L    +   
Sbjct: 131 ILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALE 190

Query: 635 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDK 689
           DAG Y C +         N       +      +  K             K      G +
Sbjct: 191 DAGYYRCVLTFAHEGQQYN-------ITRSIELRIKKKKEETIPVIISPLKTISASLGSR 243

Query: 690 VRLECVAF---GYPVPSYNWTRRGSPLPRNAYFEN-----------------FNRILTIP 729
           + + C  F   G P+ +  W         +AY                        L   
Sbjct: 244 LTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFD 303

Query: 730 NVKVEDQG-EYICRASNDRSALESSVTISIQAEPN 763
            V  ED   ++ C   N  S    ++  +++   +
Sbjct: 304 PVTREDLHMDFKCVVHNTLS--FQTLRTTVKEHHH 336

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 98.2 bits (244), Expect = 2e-22
 Identities = 43/227 (18%), Positives = 71/227 (31%), Gaps = 32/227 (14%)

Query: 596 YPGVNYYWARDYFPNFVEEDKRVFVSY-DGALYFSALEQIDAGNYSCNVQSKVSDTGRNG 654
            P +N  W ++     V  ++   +   DGAL+     Q D+G Y C  ++       + 
Sbjct: 52  SPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMS- 110

Query: 655 PFFPLKVF-PHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF-----GYPVPSYNWTR 708
               L+VF     F           ++P+         L C                W +
Sbjct: 111 --IELRVFENTDAFLP-------FISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYK 161

Query: 709 RGSPLP---RNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAE---- 761
               L               L + +V +ED G Y C  +      + ++T SI+      
Sbjct: 162 DSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKK 221

Query: 762 -----PNFTIPLTDKHMDNQADLTWTCEAF---GVPDVTYSWFRNGE 800
                P    PL        + LT  C+ F   G P  T  W+   +
Sbjct: 222 KEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTAND 268

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 92.8 bits (230), Expect = 2e-20
 Identities = 42/305 (13%), Positives = 72/305 (23%), Gaps = 48/305 (15%)

Query: 190 PYFIKQPTDVVFDLSKRSILN--DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 247
            +  +          +   L    +    +A   P  +  W K D  +       +    
Sbjct: 19  RFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSART------VPGEE 72

Query: 248 DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIG 307
           + R     G L +      ED G+Y C   N        S++L      +  L       
Sbjct: 73  ETRMWAQDGALWLLPA-LQEDSGTYVCTTRNASYCD-KMSIELRVFENTDAFLPFISYPQ 130

Query: 308 NQNWGK------AMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQI 361
                           +   +   V   W +D      + +K + V     L    +   
Sbjct: 131 ILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALE 190

Query: 362 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDK 416
           DAG Y C +         N       +      +  K             K      G +
Sbjct: 191 DAGYYRCVLTFAHEGQQYN-------ITRSIELRIKKKKEETIPVIISPLKTISASLGSR 243

Query: 417 VRLECVAF---GYPVPSYNWTRRGSPLPRNAYFEN-----------------FNRILTIP 456
           + + C  F   G P+ +  W         +AY                        L   
Sbjct: 244 LTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFD 303

Query: 457 NVKMR 461
            V   
Sbjct: 304 PVTRE 308

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 84.4 bits (208), Expect = 1e-17
 Identities = 22/134 (16%), Positives = 39/134 (29%), Gaps = 18/134 (13%)

Query: 686 AGDKVRLEC-------VAFGYPVPSYNWTRRGSPLP----RNAYFENFNRILTIPNVKVE 734
            G+ V L C        A   P  +  W +  S               +  L +     E
Sbjct: 32  EGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQE 91

Query: 735 DQGEYICRASNDRSALESSVTISIQAEPNFTIP--LTDKHMDNQADLTWTCEAF-----G 787
           D G Y+C   N     + S+ + +    +  +P     + +         C         
Sbjct: 92  DSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRD 151

Query: 788 VPDVTYSWFRNGEL 801
             DV   W+++  L
Sbjct: 152 KTDVKIQWYKDSLL 165

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 16/111 (14%), Positives = 30/111 (27%), Gaps = 16/111 (14%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAG---GYPNPSYEWFKED-------YVQDRLV 239
           P  I     +   L  R     +T+ C      G P  +  W+  +       Y   R+ 
Sbjct: 227 PVIISPLKTISASLGSR-----LTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVT 281

Query: 240 ANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
                  S+         LI +   + +    + C   N      +    +
Sbjct: 282 EGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSF-QTLRTTV 331

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  109 bits (273), Expect = 3e-26
 Identities = 41/230 (17%), Positives = 67/230 (29%), Gaps = 25/230 (10%)

Query: 590 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVS-YDGALYFSALEQIDAGNYSCNVQSKVS 648
           C    N       W +D     V  ++   +  +   L+F   +  D+G+Y C V++   
Sbjct: 27  CPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSY 86

Query: 649 DTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC------VAFGYPVP 702
                      K   +          N    F +         L C            +P
Sbjct: 87  CLRIK---ISAKFVENEP----NLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELP 139

Query: 703 SYNWTRRGSPLP-RNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ-- 759
              W +   PL   N +F      L + NV  + +G Y C AS      +  +T  I+  
Sbjct: 140 KLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFI 199

Query: 760 --AEPNFTIPLTDKHMDNQA------DLTWTCEAFGVPDVTYSWFRNGEL 801
              E   T P+     +          +   C   G       W  NG +
Sbjct: 200 TLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSV 249

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  108 bits (270), Expect = 7e-26
 Identities = 43/310 (13%), Positives = 80/310 (25%), Gaps = 64/310 (20%)

Query: 486 TLSCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 544
              C      +  +  W+K+D          +      R       L     + VED G 
Sbjct: 24  VRPCPLNPNEHKGTITWYKDD------SKTPVSTEQASRIHQHKEKLWFVPAK-VEDSGH 76

Query: 545 YHCKASNKFGSIISESVQL-------AFGFIGEFNLKRAPEIGNQNW--GKAMFCDPPTN 595
           Y+C   N    +    +            +  +   K+   +          M      N
Sbjct: 77  YYCVVRNSSYCL-RIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNEN 135

Query: 596 YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQS---------- 645
                  W +D  P  +  D   F      L    + +   GNY+C+             
Sbjct: 136 NELPKLQWYKDCKP--LLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPIT 193

Query: 646 ---KVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVP 702
              +      N P  P+ V P +   ++                G +++L C   G    
Sbjct: 194 RVIEFITLEENKPTRPVIVSPANETMEVD--------------LGSQIQLICNVTGQLSD 239

Query: 703 SYNWTRRGSPLPRNAYFENFNR----------------ILTIPNVKVED-QGEYICRASN 745
              W   GS +  +      +                 +L I  ++    +  + C A N
Sbjct: 240 IAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKN 299

Query: 746 DRSALESSVT 755
                 + + 
Sbjct: 300 THGIDAAYIQ 309

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 90.9 bits (225), Expect = 4e-20
 Identities = 47/292 (16%), Positives = 79/292 (27%), Gaps = 53/292 (18%)

Query: 317 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVS-YDGALYFSALEQIDAGNYSCNVQSKVS 375
           C    N       W +D     V  ++   +  +   L+F   +  D+G+Y C V++   
Sbjct: 27  CPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSY 86

Query: 376 DTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC------VAFGYPVP 429
                      K   +          N    F +         L C            +P
Sbjct: 87  CLRIK---ISAKFVENEP----NLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELP 139

Query: 430 SYNWTRRGSPLP-RNAYFENFNRILTIPNVKM--RGPY------------FIKQPTDVVF 474
              W +   PL   N +F      L + NV    RG Y            +         
Sbjct: 140 KLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFI 199

Query: 475 DLSKRSIL-----------------NDITLSCYAGGYPNPSYEWFK------EDYVQDRL 511
            L +                     + I L C   G  +    W        ED      
Sbjct: 200 TLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGE 259

Query: 512 VANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
               ++  ++KR +     L I++      +  + C A N  G   +  +QL
Sbjct: 260 DYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGI-DAAYIQL 310

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 90.9 bits (225), Expect = 5e-20
 Identities = 42/294 (14%), Positives = 76/294 (25%), Gaps = 66/294 (22%)

Query: 213 TLSCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 271
              C      +  +  W+K+D          +      R       L     + VED G 
Sbjct: 24  VRPCPLNPNEHKGTITWYKDD------SKTPVSTEQASRIHQHKEKLWFVPAK-VEDSGH 76

Query: 272 YHCKASNKFGSIISESVQL-------AFGFIGEFNLKRAPEIGNQNW--GKAMFCDPPTN 322
           Y+C   N    +    +            +  +   K+   +          M      N
Sbjct: 77  YYCVVRNSSYCL-RIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNEN 135

Query: 323 YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQS---------- 372
                  W +D  P  +  D   F      L    + +   GNY+C+             
Sbjct: 136 NELPKLQWYKDCKP--LLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPIT 193

Query: 373 ---KVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVP 429
              +      N P  P+ V P +   ++                G +++L C   G    
Sbjct: 194 RVIEFITLEENKPTRPVIVSPANETMEVD--------------LGSQIQLICNVTGQLSD 239

Query: 430 SYNWTRRGSPLPRNAYFENFNR----------------ILTIPNVKMR---GPY 464
              W   GS +  +      +                 +L I  ++ R    P+
Sbjct: 240 IAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPF 293

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 70.9 bits (173), Expect = 2e-13
 Identities = 20/130 (15%), Positives = 34/130 (26%), Gaps = 15/130 (11%)

Query: 686 AGDKVRLECVAFGYPVP-SYNWTRRGSPLP----RNAYFENFNRILTIPNVKVEDQGEYI 740
           A +     C         +  W +  S  P    + +        L     KVED G Y 
Sbjct: 19  ANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYY 78

Query: 741 CRASNDRSALESSVTISI-QAEPNFTIPLTDK-----HMDNQADLT----WTCEAFGVPD 790
           C   N    L   ++    + EPN              +     L        +      
Sbjct: 79  CVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNEL 138

Query: 791 VTYSWFRNGE 800
               W+++ +
Sbjct: 139 PKLQWYKDCK 148

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 48.6 bits (115), Expect = 4e-06
 Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 7/86 (8%)

Query: 211 DITLSCYAGGYPNPSYEWFK------EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPR 264
            I L C   G  +    W        ED          ++  ++KR +     L I++  
Sbjct: 226 QIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIE 285

Query: 265 QVEDRGSYHCKASNKFGSIISESVQL 290
               +  + C A N  G   +  +QL
Sbjct: 286 SRFYKHPFTCFAKNTHGI-DAAYIQL 310

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score =  109 bits (274), Expect = 3e-26
 Identities = 45/325 (13%), Positives = 88/325 (27%), Gaps = 37/325 (11%)

Query: 474 FDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLII 533
             +      + +  +         +  W+     +D     +   L + R +     L  
Sbjct: 25  ARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEE-PINFRLPENRISKEKDVLWF 83

Query: 534 NDPRQVEDRGSYHCKASNKFGSI-------ISESVQLAFGFIGEFNLKRAPEIGNQNWGK 586
             P  + D G+Y C   N            + +        +     K   E G Q    
Sbjct: 84  R-PTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITC 142

Query: 587 AMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSK 646
                   +       W    +     ++    +     L F      + GNY+C V   
Sbjct: 143 PNVDGYFPSSVKPTITWYMGCYK---IQNFNNVIPEGMNLSFLIALISNNGNYTCVV--T 197

Query: 647 VSDTGRNGPF---FPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF----GY 699
             + GR         +KV            ++         + G+++ + C  +      
Sbjct: 198 YPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMD 257

Query: 700 PVPSYNWTRRGSPL--------------PRNAYFENFNRILTIPNVKVEDQG-EYICRAS 744
                 WT  G                       E   +IL+I  V  ED    Y+C A 
Sbjct: 258 SRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHAR 317

Query: 745 NDRSALESSVTISIQAE-PNFTIPL 768
           + +  +  +  +  +   P +T+ L
Sbjct: 318 SAKGEVAKAAKVKQKVPAPRYTVEL 342

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score =  100 bits (250), Expect = 4e-23
 Identities = 35/245 (14%), Positives = 69/245 (28%), Gaps = 32/245 (13%)

Query: 589 FCDPPTNYPGVNYYWARDYFPNFVEE-------DKRVFVSYDGALYFSALEQIDAGNYSC 641
           F     +  G+   W        +EE       + R+       L+F      D GNY+C
Sbjct: 38  FNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKE-KDVLWFRPTLLNDTGNYTC 96

Query: 642 NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVR---LECVAFG 698
            +++    T  +   FPL+V           P   P           ++    ++     
Sbjct: 97  MLRN---TTYCSKVAFPLEVVQKD--SCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPS 151

Query: 699 YPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASND----RSALESSV 754
              P+  W      +            L+     + + G Y C  +         L  ++
Sbjct: 152 SVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTL 211

Query: 755 TISIQAEPNFTIPLTDKHMDNQ--------ADLTWTCEAF----GVPDVTYSWFRNGELG 802
           T+ +   P   +P      ++          +L   C  +            W  +G+  
Sbjct: 212 TVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKP 271

Query: 803 HQMTD 807
             +T 
Sbjct: 272 DDITI 276

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 83.8 bits (206), Expect = 2e-17
 Identities = 38/295 (12%), Positives = 72/295 (24%), Gaps = 38/295 (12%)

Query: 201 FDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLII 260
             +      + +  +         +  W+     +D     +   L + R +     L  
Sbjct: 25  ARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEE-PINFRLPENRISKEKDVLWF 83

Query: 261 NDPRQVEDRGSYHCKASNKFGSI-------ISESVQLAFGFIGEFNLKRAPEIGNQNWGK 313
             P  + D G+Y C   N            + +        +     K   E G Q    
Sbjct: 84  R-PTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITC 142

Query: 314 AMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSK 373
                   +       W    +     ++    +     L F      + GNY+C V   
Sbjct: 143 PNVDGYFPSSVKPTITWYMGCYK---IQNFNNVIPEGMNLSFLIALISNNGNYTCVV--T 197

Query: 374 VSDTGRNGPF---FPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF----GY 426
             + GR         +KV            ++         + G+++ + C  +      
Sbjct: 198 YPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMD 257

Query: 427 PVPSYNWTRRGSPL--------------PRNAYFENFNRILTIPNVKMR---GPY 464
                 WT  G                       E   +IL+I  V        Y
Sbjct: 258 SRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSY 312

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 81.5 bits (200), Expect = 1e-16
 Identities = 40/301 (13%), Positives = 79/301 (26%), Gaps = 62/301 (20%)

Query: 316 FCDPPTNYPGVNYYWARDYFPNFVEE-------DKRVFVSYDGALYFSALEQIDAGNYSC 368
           F     +  G+   W        +EE       + R+       L+F      D GNY+C
Sbjct: 38  FNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKE-KDVLWFRPTLLNDTGNYTC 96

Query: 369 NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVR---LECVAFG 425
            +++    T  +   FPL+V           P   P           ++    ++     
Sbjct: 97  MLRN---TTYCSKVAFPLEVVQKD--SCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPS 151

Query: 426 YPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKM--RGPY------------------- 464
              P+  W      +            L+     +   G Y                   
Sbjct: 152 SVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTL 211

Query: 465 --------------FIKQPTDVVFDLSKRSILNDITLSCYA----GGYPNPSYEWFKEDY 506
                          I  P D V  + ++    ++ + C               W  +  
Sbjct: 212 TVKVVGSPKNAVPPVIHSPNDHV--VYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGK 269

Query: 507 VQDRLVANLIDPLSDKRFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGSIISESVQ 562
             D +  ++    S              L I      + + SY C A +  G  ++++ +
Sbjct: 270 KPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGE-VAKAAK 328

Query: 563 L 563
           +
Sbjct: 329 V 329

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 68.0 bits (165), Expect = 3e-12
 Identities = 34/304 (11%), Positives = 63/304 (20%), Gaps = 80/304 (26%)

Query: 411 PKAGDKVRLECVAFGYPVPSYNWTRRGSPLPR---NAYFENFNRI------LTIPNVKMR 461
           P     ++           +  W              +    NRI      L      + 
Sbjct: 30  PLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLN 89

Query: 462 --GPY----------------------------FIKQPTDVVFDLSKRSILNDITLSCYA 491
             G Y                             +K P   ++       +    +  Y 
Sbjct: 90  DTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYF 149

Query: 492 GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASN 551
                P+  W+   Y                     G NL       + + G+Y C  + 
Sbjct: 150 PSSVKPTITWYMGCYKIQN----------FNNVIPEGMNLSFLIA-LISNNGNYTCVVTY 198

Query: 552 KFGSI---ISESVQL---------AFGFIGEFNLKRAPEIGNQNWG----KAMFCDPPTN 595
                   ++ ++ +             I   N     E              F     +
Sbjct: 199 PENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDS 258

Query: 596 YPGVNYYWARD-------YFPNFVEEDKRVFVSYDGA----LYFSALEQID-AGNYSCNV 643
              V  +W  D            + E      + D      L    +   D   +Y C+ 
Sbjct: 259 RNEV--WWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHA 316

Query: 644 QSKV 647
           +S  
Sbjct: 317 RSAK 320

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 63.3 bits (153), Expect = 8e-11
 Identities = 27/218 (12%), Positives = 51/218 (23%), Gaps = 41/218 (18%)

Query: 185 KIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLID 244
           K       +K P   ++       +    +  Y      P+  W+   Y           
Sbjct: 116 KDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQN------- 168

Query: 245 PLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI---ISESVQL---------AF 292
                     G NL       + + G+Y C  +         ++ ++ +           
Sbjct: 169 ---FNNVIPEGMNLSFLIA-LISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVP 224

Query: 293 GFIGEFNLKRAPEIGNQNWG----KAMFCDPPTNYPGVNYYWARD-------YFPNFVEE 341
             I   N     E              F     +   V  +W  D            + E
Sbjct: 225 PVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEV--WWTIDGKKPDDITIDVTINE 282

Query: 342 DKRVFVSYDGA----LYFSALEQID-AGNYSCNVQSKV 374
                 + D      L    +   D   +Y C+ +S  
Sbjct: 283 SISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAK 320

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 61.8 bits (149), Expect = 3e-10
 Identities = 18/145 (12%), Positives = 32/145 (22%), Gaps = 29/145 (20%)

Query: 686 AGDKVRLECVAF-----------GYPVPSYNWTRRGSPLPR---NAYFENFNRI------ 725
             +  R++C  F                +  W              +    NRI      
Sbjct: 21  EDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDV 80

Query: 726 LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEP----NFTIPLTDKHMDNQADLTW 781
           L      + D G Y C   N     + +  + +  +     +       K          
Sbjct: 81  LWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRI 140

Query: 782 TCEAF-----GVPDVTYSWFRNGEL 801
           TC             T +W+     
Sbjct: 141 TCPNVDGYFPSSVKPTITWYMGCYK 165

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score =  105 bits (263), Expect = 4e-26
 Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 4/118 (3%)

Query: 685 KAGDKVRLECVAFGYPVP--SYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICR 742
            +   V L+C             WT+ G  L       + N    I   + ED GEY C 
Sbjct: 16  DSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNAS-NMEYRINKPRAEDSGEYHCV 74

Query: 743 ASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
                +  +++ TI ++A P+ T     ++ +   D    C++ G P   + W +   
Sbjct: 75  YHFVSAP-KANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKEN 131

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 97.2 bits (242), Expect = 2e-23
 Identities = 38/182 (20%), Positives = 57/182 (31%), Gaps = 41/182 (22%)

Query: 412 KAGDKVRLECVAFGYPVP--SYNWTRRGSPLPRNAYFENFNRILTIPNVKM--RG----- 462
            +   V L+C             WT+ G  L       + N    I   +    G     
Sbjct: 16  DSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNAS-NMEYRINKPRAEDSGEYHCV 74

Query: 463 ------------------PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKE 504
                             P           +  +     D  + C + GYP+P + W K+
Sbjct: 75  YHFVSAPKANATIEVKAAPDITGHKRSENKNEGQ-----DAMMYCKSVGYPHPEWMWRKK 129

Query: 505 DYVQDRLVANLIDPLSDKRFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISESV 561
               +  V   I   S + F ++  N   L I + +  ED G Y C A+N  GS  S S 
Sbjct: 130 ----ENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGS-ASVST 184

Query: 562 QL 563
            L
Sbjct: 185 VL 186

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 78.4 bits (193), Expect = 8e-17
 Identities = 28/180 (15%), Positives = 59/180 (32%), Gaps = 40/180 (22%)

Query: 597 PGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC--NVQSKVSDTGRNG 654
             +  YW ++     +   ++   + +     +     D+G Y C  +  S         
Sbjct: 33  TLMYSYWTKNGVE--LTATRKN--ASNMEYRINKPRAEDSGEYHCVYHFVSAPKANAT-- 86

Query: 655 PFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRR 709
               ++V                       +      G    + C + GYP P + W ++
Sbjct: 87  ----IEV-------------KAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKK 129

Query: 710 GSPLP-----RNAYF----ENFNRILTIPNVKV-EDQGEYICRASNDRSALESSVTISIQ 759
            + +       +  F    +     L I N+++ ED GEY C A+N   +   S  + ++
Sbjct: 130 ENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR 189

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 72.2 bits (177), Expect = 1e-14
 Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 13/104 (12%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           P           +  +     D  + C + GYP+P + W K++      V   I   S +
Sbjct: 93  PDITGHKRSENKNEGQ-----DAMMYCKSVGYPHPEWMWRKKE----NGVFEEISNSSGR 143

Query: 250 RFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
            F ++  N   L I + +  ED G Y C A+N  GS  S S  L
Sbjct: 144 FFIINKENYTELNIVNLQITEDPGEYECNATNSIGS-ASVSTVL 186

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 66.0 bits (161), Expect = 1e-12
 Identities = 43/202 (21%), Positives = 61/202 (30%), Gaps = 45/202 (22%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP--SYEWFKEDYVQDRLVANLIDPLS 247
           P  +     ++ D         +TL C      +      W K               L+
Sbjct: 4   PRIVTSEEVIIRDSLL-----PVTLQCNLTSSSHTLMYSYWTKNG-----------VELT 47

Query: 248 DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIG 307
             R   S     IN PR  ED G YHC       S    +  +         +K AP+I 
Sbjct: 48  ATRKNASNMEYRINKPRA-EDSGEYHCVYHF--VSAPKANATI--------EVKAAPDIT 96

Query: 308 ------NQNWGK-AMF-CDPPTNYPGVNYYWARDYFPNFVEEDK---RVFVSYDGALY-- 354
                 N+N G+ AM  C     YP   + W +     F E      R F+         
Sbjct: 97  GHKRSENKNEGQDAMMYCK-SVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTEL 155

Query: 355 --FSALEQIDAGNYSCNVQSKV 374
              +     D G Y CN  + +
Sbjct: 156 NIVNLQITEDPGEYECNATNSI 177

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 56.0 bits (135), Expect = 5e-09
 Identities = 21/160 (13%), Positives = 47/160 (29%), Gaps = 42/160 (26%)

Query: 324 PGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC--NVQSKVSDTGRNG 381
             +  YW ++     +   ++   + +     +     D+G Y C  +  S         
Sbjct: 33  TLMYSYWTKNGVE--LTATRKN--ASNMEYRINKPRAEDSGEYHCVYHFVSAPKANAT-- 86

Query: 382 PFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRR 436
               ++V                       +      G    + C + GYP P + W ++
Sbjct: 87  ----IEV-------------KAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKK 129

Query: 437 GSPLP-----RNAYF----ENFNRILTIPNVKMR---GPY 464
            + +       +  F    +     L I N+++    G Y
Sbjct: 130 ENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEY 169

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  104 bits (261), Expect = 8e-26
 Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 6/121 (4%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLP----RNAYFENFNRILTIPNVKVEDQGEYI 740
              +     C    YP P  +WTR    +     R +  EN  ++LTI +V+  D G Y 
Sbjct: 20  LVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIREN-GQLLTILSVEDSDDGIYC 78

Query: 741 CRASND-RSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNG 799
           C A+N    A+ES   + ++ +P  T P  +  +         C   G P  + SW +  
Sbjct: 79  CTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGD 138

Query: 800 E 800
            
Sbjct: 139 S 139

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 99.8 bits (249), Expect = 3e-24
 Identities = 44/185 (23%), Positives = 61/185 (32%), Gaps = 51/185 (27%)

Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLP----RNAYFENFNRILTIPNVKMR------ 461
              +     C    YP P  +WTR    +     R +  EN  ++LTI +V+        
Sbjct: 20  LVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIREN-GQLLTILSVEDSDDGIYC 78

Query: 462 ---------------------GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYE 500
                                 P   + P +V              L C   G P PS  
Sbjct: 79  CTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGL-----KAVLPCTTMGNPKPSVS 133

Query: 501 WFKEDYVQDRLVANLIDPL-SDKRFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSIIS 558
           W K D             L  + R   L  G+L I++  Q ED G Y C A N  G+  S
Sbjct: 134 WIKGD-----------SALRENSRIAVLESGSLRIHNV-QKEDAGQYRCVAKNSLGTAYS 181

Query: 559 ESVQL 563
           + V+L
Sbjct: 182 KLVKL 186

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 96.7 bits (241), Expect = 4e-23
 Identities = 42/201 (20%), Positives = 69/201 (34%), Gaps = 36/201 (17%)

Query: 184 DKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLI 243
           +K+P+ P        V   + +       T  C    YP P   W +           LI
Sbjct: 2   EKLPKAPVITTPLETVDALVEE-----VATFMCAVESYPQPEISWTRNK--------ILI 48

Query: 244 DPLSDKRFTL--SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK 301
               D R+++  +G  L I       D G Y C A+N  G  +     L         +K
Sbjct: 49  KL-FDTRYSIRENGQLLTILSVED-SDDGIYCCTANNGVGGAVESCGAL--------QVK 98

Query: 302 RAPEIGNQ------NWGKA--MFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGAL 353
             P+I           G    + C      P  +  W +      + E+ R+ V   G+L
Sbjct: 99  MKPKITRPPINVKIIEGLKAVLPC-TTMGNPKPSVSWIKGDSA--LRENSRIAVLESGSL 155

Query: 354 YFSALEQIDAGNYSCNVQSKV 374
               +++ DAG Y C  ++ +
Sbjct: 156 RIHNVQKEDAGQYRCVAKNSL 176

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 92.1 bits (229), Expect = 1e-21
 Identities = 40/195 (20%), Positives = 64/195 (32%), Gaps = 36/195 (18%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
           P        V   + +       T  C    YP P   W +           LI    D 
Sbjct: 8   PVITTPLETVDALVEE-----VATFMCAVESYPQPEISWTRNK--------ILIKL-FDT 53

Query: 523 RFTL--SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIG 580
           R+++  +G  L I       D G Y C A+N  G  +     L         +K  P+I 
Sbjct: 54  RYSIRENGQLLTILSVED-SDDGIYCCTANNGVGGAVESCGAL--------QVKMKPKIT 104

Query: 581 NQ------NWGKA--MFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALE 632
                     G    + C      P  +  W +      + E+ R+ V   G+L    ++
Sbjct: 105 RPPINVKIIEGLKAVLPC-TTMGNPKPSVSWIKGDSA--LRENSRIAVLESGSLRIHNVQ 161

Query: 633 QIDAGNYSCNVQSKV 647
           + DAG Y C  ++ +
Sbjct: 162 KEDAGQYRCVAKNSL 176

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 87.5 bits (217), Expect = 7e-20
 Identities = 41/167 (24%), Positives = 62/167 (37%), Gaps = 12/167 (7%)

Query: 596 YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGP 655
           YP     W R+     + + +         L   ++E  D G Y C   + V     +  
Sbjct: 34  YPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCG 93

Query: 656 FFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPR 715
              +K+ P     +   P N      E    G K  L C   G P PS +W +  S L  
Sbjct: 94  ALQVKMKPK--ITRP--PIN--VKIIE----GLKAVLPCTTMGNPKPSVSWIKGDSALRE 143

Query: 716 NAYFE-NFNRILTIPNVKVEDQGEYICRASNDR-SALESSVTISIQA 760
           N+      +  L I NV+ ED G+Y C A N   +A    V + ++ 
Sbjct: 144 NSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEV 190

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 74.0 bits (182), Expect = 3e-15
 Identities = 30/103 (29%), Positives = 39/103 (37%), Gaps = 19/103 (18%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL-SD 248
           P   + P +V              L C   G P PS  W K D             L  +
Sbjct: 101 PKITRPPINVKIIEGL-----KAVLPCTTMGNPKPSVSWIKGD-----------SALREN 144

Query: 249 KRFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
            R   L  G+L I++  Q ED G Y C A N  G+  S+ V+L
Sbjct: 145 SRIAVLESGSLRIHNV-QKEDAGQYRCVAKNSLGTAYSKLVKL 186

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 62.1 bits (151), Expect = 3e-11
 Identities = 32/138 (23%), Positives = 48/138 (34%), Gaps = 11/138 (7%)

Query: 323 YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGP 382
           YP     W R+     + + +         L   ++E  D G Y C   + V     +  
Sbjct: 34  YPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCG 93

Query: 383 FFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPR 442
              +K+ P     +   P N      E    G K  L C   G P PS +W +  S L  
Sbjct: 94  ALQVKMKPK--ITRP--PIN--VKIIE----GLKAVLPCTTMGNPKPSVSWIKGDSALRE 143

Query: 443 NAYFE-NFNRILTIPNVK 459
           N+      +  L I NV+
Sbjct: 144 NSRIAVLESGSLRIHNVQ 161

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 11/43 (25%), Positives = 14/43 (32%)

Query: 758 IQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
           +   P  T PL       +   T+ C     P    SW RN  
Sbjct: 4   LPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKI 46

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score =  104 bits (260), Expect = 9e-26
 Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 8/122 (6%)

Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRN------AYFENFNRILTIPNVKVEDQGEYI 740
           G  V+L C   G   P   W + G+ +            +++   L++ +V+  D G Y 
Sbjct: 17  GQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYW 76

Query: 741 CRASNDR-SALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPD-VTYSWFRN 798
           C+  +   + +   V ++++  P FT+   D  +   A    +CEA G P+ VT  W+R 
Sbjct: 77  CQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRG 136

Query: 799 GE 800
             
Sbjct: 137 TT 138

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 87.9 bits (218), Expect = 3e-20
 Identities = 30/184 (16%), Positives = 56/184 (30%), Gaps = 55/184 (29%)

Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRN------AYFENFNRILTIPNVKMR--G--- 462
           G  V+L C   G   P   W + G+ +            +++   L++ +V+    G   
Sbjct: 17  GQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYW 76

Query: 463 ----------------------PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP-SY 499
                                 P+F  +P D+    +         LSC A G P P + 
Sbjct: 77  CQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPN-----APFQLSCEAVGPPEPVTI 131

Query: 500 EWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE 559
            W++               +       +    ++N    V     + C+A N  G   S 
Sbjct: 132 VWWRGT-----------TKIGGP----APSPSVLNVT-GVTQSTMFSCEAHNLKGLASSR 175

Query: 560 SVQL 563
           +  +
Sbjct: 176 TATV 179

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 77.9 bits (192), Expect = 1e-16
 Identities = 29/193 (15%), Positives = 53/193 (27%), Gaps = 32/193 (16%)

Query: 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
           G   +  P  +     +      + L+C   G   P  +W K+          ++  L  
Sbjct: 2   GLKLMGAPVKLTVSQGQ-----PVKLNCSVEGMEEPDIQWVKDG--------AVVQNLDQ 48

Query: 249 KRFTLSG----GNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAP 304
               +S     G L +    +  D G Y C+  +   + IS+ V L    +  F     P
Sbjct: 49  LYIPVSEQHWIGFLSLKSVER-SDAGRYWCQVEDGGETEISQPVWLTVEGVPFF--TVEP 105

Query: 305 EIGNQNWGK-AMF-CDPPTNYPG-VNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQI 361
           +             C      P  V   W R           ++          +     
Sbjct: 106 KDLAVPPNAPFQLSC-EAVGPPEPVTIVWWRG--------TTKIGGPAPSPSVLNVTGVT 156

Query: 362 DAGNYSCNVQSKV 374
            +  +SC   +  
Sbjct: 157 QSTMFSCEAHNLK 169

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 76.4 bits (188), Expect = 3e-16
 Identities = 34/171 (19%), Positives = 55/171 (32%), Gaps = 38/171 (22%)

Query: 603 WARDYFPNFVEEDKRVFVS---YDGALYFSALEQIDAGNYSC----NVQSKVSDTGRNGP 655
           W +D       +   + VS   + G L   ++E+ DAG Y C      ++++S       
Sbjct: 36  WVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVW--- 92

Query: 656 FFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVP-SYNWTRR 709
              L V                  F   PK          +L C A G P P +  W R 
Sbjct: 93  ---LTV-------------EGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRG 136

Query: 710 GSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALES-SVTISIQ 759
            + +   A          +    V     + C A N +    S + T+ +Q
Sbjct: 137 TTKIGGPA-----PSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHLQ 182

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 62.5 bits (152), Expect = 2e-11
 Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 22/102 (21%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPLSD 248
           P+F  +P D+    +         LSC A G P P +  W++               +  
Sbjct: 99  PFFTVEPKDLAVPPN-----APFQLSCEAVGPPEPVTIVWWRGT-----------TKIGG 142

Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
                +    ++N    V     + C+A N  G   S +  +
Sbjct: 143 P----APSPSVLNVT-GVTQSTMFSCEAHNLKGLASSRTATV 179

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 52.9 bits (127), Expect = 4e-08
 Identities = 28/148 (18%), Positives = 46/148 (31%), Gaps = 35/148 (23%)

Query: 330 WARDYFPNFVEEDKRVFVS---YDGALYFSALEQIDAGNYSC----NVQSKVSDTGRNGP 382
           W +D       +   + VS   + G L   ++E+ DAG Y C      ++++S       
Sbjct: 36  WVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVW--- 92

Query: 383 FFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVP-SYNWTRR 436
              L V                  F   PK          +L C A G P P +  W R 
Sbjct: 93  ---LTV-------------EGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRG 136

Query: 437 GSPLPRNAYFENFNRILTIPNVKMRGPY 464
            + +           +L +  V     +
Sbjct: 137 TTKIGGP---APSPSVLNVTGVTQSTMF 161

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score =  106 bits (266), Expect = 9e-26
 Identities = 48/283 (16%), Positives = 79/283 (27%), Gaps = 46/283 (16%)

Query: 485 ITLSCYAGGYP-NPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 543
           +TL C     P + S +WF                        S  +  I     V D G
Sbjct: 19  VTLHCEVLHLPGSSSTQWFLNG----------------TATQTSTPSYRIT-SASVNDSG 61

Query: 544 SYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYW 603
            Y C+      S  S+ +QL     G   L+ +  +  +    A+ C    +    N  +
Sbjct: 62  EYRCQRGL---SGRSDPIQLEI-HRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLY 117

Query: 604 ARDYFPNFVEEDKRV-FVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF 662
            R+         K   F  ++  L          G Y C+   K            + V 
Sbjct: 118 YRN--------GKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKH---RYTSAGISVTV- 165

Query: 663 PHSNFQQLKFPNNFPKTFPEAP-KAGDKVRLECVAFGYPV-PSYNWTRRGSPLPRNAYFE 720
                 +  FP         +P   G+ V L C        P            +     
Sbjct: 166 ------KELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGR 219

Query: 721 NFNRILTIPNVKVEDQGEYICRASNDRSALES---SVTISIQA 760
           N +    I   + ED G Y C A+ +   +      + + +  
Sbjct: 220 NTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQVLG 262

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 96.1 bits (239), Expect = 3e-22
 Identities = 35/220 (15%), Positives = 71/220 (32%), Gaps = 39/220 (17%)

Query: 590 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQ-SKVS 648
           C+        +  W  +              S   +   ++    D+G Y C    S  S
Sbjct: 23  CEVLHLPGSSSTQWFLN--------GTATQTS-TPSYRITSASVNDSGEYRCQRGLSGRS 73

Query: 649 DTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF-GYPVPSYNWT 707
           D         L++       Q+       + F E    G+ + L C A+    V +  + 
Sbjct: 74  DP------IQLEIHRGWLLLQVS-----SRVFTE----GEPLALRCHAWKDKLVYNVLYY 118

Query: 708 RRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ---AEPNF 764
           R G        F ++N  LTI    +   G Y C          + ++++++     P  
Sbjct: 119 RNGKAFK----FFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVL 174

Query: 765 TIPLTDKHMDNQADLTWTCEAFGVPD-----VTYSWFRNG 799
              +T   ++    +T +CE   +       + +S++   
Sbjct: 175 NASVTSPLLEGN-LVTLSCETKLLLQRPGLQLYFSFYMGS 213

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 79.6 bits (196), Expect = 2e-16
 Identities = 44/260 (16%), Positives = 70/260 (26%), Gaps = 45/260 (17%)

Query: 212 ITLSCYAGGYP-NPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
           +TL C     P + S +WF                        S  +  I     V D G
Sbjct: 19  VTLHCEVLHLPGSSSTQWFLNG----------------TATQTSTPSYRIT-SASVNDSG 61

Query: 271 SYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYW 330
            Y C+      S  S+ +QL     G   L+ +  +  +    A+ C    +    N  +
Sbjct: 62  EYRCQRGL---SGRSDPIQLEI-HRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLY 117

Query: 331 ARDYFPNFVEEDKRV-FVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF 389
            R+         K   F  ++  L          G Y C+   K            + V 
Sbjct: 118 YRN--------GKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKH---RYTSAGISVTV- 165

Query: 390 PHSNFQQLKFPNNFPKTFPEAP-KAGDKVRLECVAFGYPV-PSYNWTRRGSPLPRNAYFE 447
                 +  FP         +P   G+ V L C        P            +     
Sbjct: 166 ------KELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGR 219

Query: 448 NFNRILTIPNVKM--RGPYF 465
           N +    I   +    G Y+
Sbjct: 220 NTSSEYQILTARREDSGLYW 239

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 78.4 bits (193), Expect = 3e-16
 Identities = 22/117 (18%), Positives = 37/117 (31%), Gaps = 11/117 (9%)

Query: 687 GDKVRLECVAFGYPVP-SYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASN 745
            + V L C     P   S  W   G+    +           I +  V D GEY C+   
Sbjct: 16  EETVTLHCEVLHLPGSSSTQWFLNGTATQTS------TPSYRITSASVNDSGEYRCQRGL 69

Query: 746 DRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAF-GVPDVTYSWFRNGEL 801
             S     + + I       + ++ +       L   C A+         ++RNG+ 
Sbjct: 70  --SGRSDPIQLEIHRGW-LLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKA 123

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 78.0 bits (192), Expect = 4e-16
 Identities = 36/272 (13%), Positives = 68/272 (25%), Gaps = 77/272 (28%)

Query: 414 GDKVRLECVAFGYPVP-SYNWTRRGSPLPRNAYFENFNRILTIPNVKMR--GPY------ 464
            + V L C     P   S  W   G+    +           I +  +   G Y      
Sbjct: 16  EETVTLHCEVLHLPGSSSTQWFLNGTATQTS------TPSYRITSASVNDSGEYRCQRGL 69

Query: 465 ---------------FIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQ 508
                           + Q +  VF   +      + L C+A       +  +++     
Sbjct: 70  SGRSDPIQLEIHRGWLLLQVSSRVFTEGE-----PLALRCHAWKDKLVYNVLYYRNG--- 121

Query: 509 DRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFI 568
                         +F     NL I     +   G+YHC    K     S  + +    +
Sbjct: 122 -----------KAFKFFHWNSNLTILKT-NISHNGTYHCSGMGKHRY-TSAGISVT---V 165

Query: 569 GEFNLKRAPEIGNQNWGKA-------MFCD----PPTNYPGVNYYWARDYFPNFVEEDKR 617
            E  L  AP +               + C+           + + +            K 
Sbjct: 166 KE--LFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMG--------SKT 215

Query: 618 V-FVSYDGALYFSALEQIDAGNYSCNVQSKVS 648
           +   +           + D+G Y C   ++  
Sbjct: 216 LRGRNTSSEYQILTARREDSGLYWCEAATEDG 247

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 55.7 bits (134), Expect = 1e-08
 Identities = 26/199 (13%), Positives = 54/199 (27%), Gaps = 47/199 (23%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
            + + Q +  VF   +      + L C+A       +  +++                  
Sbjct: 83  GWLLLQVSSRVFTEGE-----PLALRCHAWKDKLVYNVLYYRNG--------------KA 123

Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGN 308
            +F     NL I     +   G+YHC    K     S  + +    + E  L  AP +  
Sbjct: 124 FKFFHWNSNLTILKT-NISHNGTYHCSGMGKHRY-TSAGISVT---VKE--LFPAPVLNA 176

Query: 309 QNWGKA-------MFCD----PPTNYPGVNYYWARDYFPNFVEEDKRV-FVSYDGALYFS 356
                        + C+           + + +            K +   +        
Sbjct: 177 SVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMG--------SKTLRGRNTSSEYQIL 228

Query: 357 ALEQIDAGNYSCNVQSKVS 375
              + D+G Y C   ++  
Sbjct: 229 TARREDSGLYWCEAATEDG 247

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 53.0 bits (127), Expect = 1e-07
 Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 18/105 (17%)

Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYP-NPSYEWFKEDYVQDRLVANLIDP 245
              P      T  + + +       +TLSC        P  + +   Y+  + +      
Sbjct: 169 FPAPVLNASVTSPLLEGN------LVTLSCETKLLLQRPGLQLYFSFYMGSKTL------ 216

Query: 246 LSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
               R   +     I    + ED G Y C+A+ + G+++  S +L
Sbjct: 217 ----RGRNTSSEYQILTA-RREDSGLYWCEAATEDGNVLKRSPEL 256

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  103 bits (258), Expect = 3e-25
 Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 11/126 (8%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYI 740
           K G+  +L C   G P+P   W R G  L ++  +    +     LT+   + ED+G Y 
Sbjct: 20  KLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYT 79

Query: 741 CRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQA-----DLTWTCEAFGVPDVTYSW 795
           C A+N+   +E+S  + +QA P F      K  +         L       G P    +W
Sbjct: 80  CIATNEVGEVETSSKLLLQATPQFHPGYPLK--EKYYGAVGSTLRLHVMYIGRPVPAMTW 137

Query: 796 FRNGEL 801
           F   +L
Sbjct: 138 FHGQKL 143

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 88.6 bits (220), Expect = 2e-20
 Identities = 32/181 (17%), Positives = 57/181 (31%), Gaps = 44/181 (24%)

Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKMR--GPY- 464
           K G+  +L C   G P+P   W R G  L ++  +    +     LT+   +    G Y 
Sbjct: 20  KLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYT 79

Query: 465 -----------------FIKQPTDVVFDLSKRSIL----NDITLSCYAGGYPNPSYEWFK 503
                                P        K        + + L     G P P+  WF 
Sbjct: 80  CIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFH 139

Query: 504 EDYVQDRLVANLIDPL-SDKRFTLS----GGNLIINDPRQVEDRGSYHCKASNKFGSIIS 558
                          L + +  T+       +L++ + ++    G Y  + SN FG++ +
Sbjct: 140 GQ-----------KLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDA 188

Query: 559 E 559
            
Sbjct: 189 I 189

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 82.4 bits (204), Expect = 4e-18
 Identities = 34/176 (19%), Positives = 58/176 (32%), Gaps = 26/176 (14%)

Query: 596 YPGVNYYWARDYFPNFVEEDKRVFVSYDG---ALYFSALEQIDAGNYSC---NVQSKVSD 649
            P  +  W R      + + ++  +S DG    L     EQ D G Y+C   N   +V  
Sbjct: 34  RPLPDIKWYRFGKE--LIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVET 91

Query: 650 TGRNGPFFPLKVF-PHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTR 708
           + +      L +                          G  +RL  +  G PVP+  W  
Sbjct: 92  SSK------LLLQATPQFHPGYPLKEK--YYGAV----GSTLRLHVMYIGRPVPAMTWFH 139

Query: 709 RGSPLPRNAYF----ENFNRILTIPNV-KVEDQGEYICRASNDRSALESSVTISIQ 759
               L  +             L + NV +    G+Y  + SN    +++ + + IQ
Sbjct: 140 GQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ 195

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 72.0 bits (177), Expect = 1e-14
 Identities = 32/197 (16%), Positives = 59/197 (29%), Gaps = 33/197 (16%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           P   K+  DV   L +        LSC   G P P  +W++            +      
Sbjct: 8   PGIRKEMKDVTTKLGE-----AAQLSCQIVGRPLPDIKWYRFG--------KELIQSRKY 54

Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKR-- 302
           + +  G    L +    + ED G Y C A+N+ G + +     +Q    F   + LK   
Sbjct: 55  KMSSDGRTHTLTVMTE-EQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKY 113

Query: 303 APEIGNQNWGKAMF-CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALY----FSA 357
              +G+                P     W        ++  + + +            + 
Sbjct: 114 YGAVGS----TLRLHV-MYIGRPVPAMTWFHGQKL--LQNSENITIENTEHYTHLVMKNV 166

Query: 358 LEQIDAGNYSCNVQSKV 374
             +  AG Y   + +  
Sbjct: 167 QRKTHAGKYKVQLSNVF 183

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 72.0 bits (177), Expect = 1e-14
 Identities = 32/197 (16%), Positives = 59/197 (29%), Gaps = 33/197 (16%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
           P   K+  DV   L +        LSC   G P P  +W++            +      
Sbjct: 8   PGIRKEMKDVTTKLGE-----AAQLSCQIVGRPLPDIKWYRFG--------KELIQSRKY 54

Query: 523 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKR-- 575
           + +  G    L +    + ED G Y C A+N+ G + +     +Q    F   + LK   
Sbjct: 55  KMSSDGRTHTLTVMTE-EQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKY 113

Query: 576 APEIGNQNWGKAMF-CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALY----FSA 630
              +G+                P     W        ++  + + +            + 
Sbjct: 114 YGAVGS----TLRLHV-MYIGRPVPAMTWFHGQKL--LQNSENITIENTEHYTHLVMKNV 166

Query: 631 LEQIDAGNYSCNVQSKV 647
             +  AG Y   + +  
Sbjct: 167 QRKTHAGKYKVQLSNVF 183

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 62.8 bits (153), Expect = 2e-11
 Identities = 30/156 (19%), Positives = 48/156 (30%), Gaps = 28/156 (17%)

Query: 323 YPGVNYYWARDYFPNFVEEDKRVFVSYDG---ALYFSALEQIDAGNYSC---NVQSKVSD 376
            P  +  W R      + + ++  +S DG    L     EQ D G Y+C   N   +V  
Sbjct: 34  RPLPDIKWYRFGKE--LIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVET 91

Query: 377 TGRNGPFFPLKVF-PHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTR 435
           + +      L +                          G  +RL  +  G PVP+  W  
Sbjct: 92  SSK------LLLQATPQFHPGYPLKEK--YYGAV----GSTLRLHVMYIGRPVPAMTWFH 139

Query: 436 RGSPLPRNAYF----ENFNRILTIPNVKMR---GPY 464
               L  +             L + NV+ +   G Y
Sbjct: 140 GQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKY 175

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 60.1 bits (146), Expect = 2e-10
 Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 16/82 (19%)

Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL-SDKRFTLS----GGNLIINDPR 264
           + + L     G P P+  WF                L + +  T+       +L++ + +
Sbjct: 119 STLRLHVMYIGRPVPAMTWFHGQ-----------KLLQNSENITIENTEHYTHLVMKNVQ 167

Query: 265 QVEDRGSYHCKASNKFGSIISE 286
           +    G Y  + SN FG++ + 
Sbjct: 168 RKTHAGKYKVQLSNVFGTVDAI 189

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 1/45 (2%)

Query: 757 SIQAE-PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
           ++  E P     + D           +C+  G P     W+R G+
Sbjct: 2   AMSGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGK 46

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score =  108 bits (271), Expect = 3e-25
 Identities = 56/347 (16%), Positives = 93/347 (26%), Gaps = 47/347 (13%)

Query: 485 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 544
           + ++C                            PL  K   L G N  + +   V++   
Sbjct: 17  VLVTCSTSCDQPMLLGIET--------------PLPKKELLLPGNNRKVYELSNVQEDSQ 62

Query: 545 YHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMF---------CDPPTN 595
             C ++       +    L         +   PE        +           C     
Sbjct: 63  PMCYSNCP-DGQSTAKTFL--------TVYWTPERVELAPLPSWQPVGKNLTLRCQVEGG 113

Query: 596 YPGVN--YYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRN 653
            P  N      R      ++ +  V    +              N+SC  +    D    
Sbjct: 114 APRANLTVVLLRGEKE--LKREPAVGEPAEVTTTVLVRRDHHGANFSCRTEL---DLRPQ 168

Query: 654 GPFFPLKVFPHSNFQQLKFPNNFPK-TFPEAPKAGDKVRLECVAFG-YPVPSYNWTRR-- 709
           G             Q    P   P+   P   +   +  + C   G +PV          
Sbjct: 169 GLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALG 228

Query: 710 -GSPLPRNAYFENFNRILTIPNVKVEDQGEY--ICRASNDRSALESSVTISIQAEPNFTI 766
                P   Y  +        +V  ED+G     C       + E+  T++I + P   +
Sbjct: 229 DQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNV 288

Query: 767 PLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELGHQMTDLLLKAV 813
            LT   +    ++T  CEA     VT +      LG +   LLLKA 
Sbjct: 289 ILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQ-LLLKAT 334

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score =  105 bits (263), Expect = 3e-24
 Identities = 48/432 (11%), Positives = 99/432 (22%), Gaps = 75/432 (17%)

Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILT--IPNVKMRGPYF---- 465
             G  V + C                +PLP+       N      + NV+          
Sbjct: 12  PRGGSVLVTCSTSCDQPMLLGIE---TPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSN 68

Query: 466 --------------IKQPTDVVFDLSKRSIL--NDITLSCYA-GGYP--NPSYEWFKEDY 506
                            P  V             ++TL C   GG P  N +    + + 
Sbjct: 69  CPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGE- 127

Query: 507 VQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED-RGSYHCKASNKFGS---IISESVQ 562
                       L  +        +      + +    ++ C+           + E+  
Sbjct: 128 ----------KELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTS 177

Query: 563 LAFGFIGEFNLKRAPEIGNQNWGKA-----MFCDPPTNYPG--VNYYWARDYFPNFVEED 615
             +           P++ +    +      + C     +P      + A           
Sbjct: 178 APYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVT 237

Query: 616 KRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNN 675
                    A      E       +C V               + ++         FP  
Sbjct: 238 YGNDSFSAKASVSVTAEDEGTQRLTCAVILGN---QSQETLQTVTIYS--------FPAP 286

Query: 676 FPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVED 735
                      G +V ++C A      + N        PR          L +     ++
Sbjct: 287 NVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQ--------LLLKATPEDN 338

Query: 736 QGEYICRASNDRSALE----SSVTISIQAEPNFTIPLTDKHMDNQ--ADLTWTCEAFGVP 789
              + C A+ + +        +  + +   P         +      +  T  C+A+G P
Sbjct: 339 GRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNP 398

Query: 790 DVTYSWFRNGEL 801
                  ++G  
Sbjct: 399 LPELKCLKDGTF 410

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 98.0 bits (243), Expect = 1e-21
 Identities = 60/463 (12%), Positives = 114/463 (24%), Gaps = 96/463 (20%)

Query: 342 DKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPN 401
            K + +  +    +      +     C        +              +       P 
Sbjct: 39  KKELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAK-----------TFLTVYWTPE 87

Query: 402 NFPKT-FPEAPKAGDKVRLEC-VAFGYPVPS--YNWTRRGSPLPRNAYF-ENFNRILTIP 456
                  P     G  + L C V  G P  +      R    L R     E      T+ 
Sbjct: 88  RVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVL 147

Query: 457 NVK-------------------------------MRGPYFIKQPTDVVFDLSKRSILNDI 485
             +                               ++       P  +V            
Sbjct: 148 VRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVD-TQG 206

Query: 486 TLSCYA-GGYPNPSYE--WFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 542
           T+ C   G +P    +      D   +  V    D  S            ++   + E  
Sbjct: 207 TVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFS--------AKASVSVTAEDEGT 258

Query: 543 GSYHCKASNKFGSI-ISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMF-CD--PPTNYPG 598
               C       S    ++V +         L +               C+  P      
Sbjct: 259 QRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTE---VTVKCEAHPR---AK 312

Query: 599 VNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPF-F 657
           V              +           L   A  + +  ++SC+   +V+    +     
Sbjct: 313 VTLNGVPAQPLGPRAQ-----------LLLKATPEDNGRSFSCSATLEVAGQLIHKNQTR 361

Query: 658 PLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA 717
            L+V       +   P N+  T+PE      +    C A+G P+P     + G+      
Sbjct: 362 ELRVLYGPRLDERDCPGNW--TWPE----NSQQTPMCQAWGNPLPELKCLKDGTFP---- 411

Query: 718 YFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQA 760
                  I     V  + +G Y+CRA + +  +   VT+++ +
Sbjct: 412 -----LPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 449

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 81.8 bits (201), Expect = 2e-16
 Identities = 56/480 (11%), Positives = 104/480 (21%), Gaps = 104/480 (21%)

Query: 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 271
           + ++C                            PL  K   L G N  + +   V++   
Sbjct: 17  VLVTCSTSCDQPMLLGIET--------------PLPKKELLLPGNNRKVYELSNVQEDSQ 62

Query: 272 YHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMF---------CDPPTN 322
             C ++       +    L         +   PE        +           C     
Sbjct: 63  PMCYSNCP-DGQSTAKTFL--------TVYWTPERVELAPLPSWQPVGKNLTLRCQVEGG 113

Query: 323 YPGVN--YYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRN 380
            P  N      R      ++ +  V    +              N+SC  +    D    
Sbjct: 114 APRANLTVVLLRGEKE--LKREPAVGEPAEVTTTVLVRRDHHGANFSCRTE---LDLRPQ 168

Query: 381 GPFFPLKVFPHSNFQQLKFPNNFPK-TFPEAPKAGDKVRLECVAFG-YPVPSYNWTRR-- 436
           G             Q    P   P+   P   +   +  + C   G +PV          
Sbjct: 169 GLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALG 228

Query: 437 -GSPLPRNAYFENFNRILTIPNVKMR--GPYFI--------------------KQPTDVV 473
                P   Y  +        +V     G   +                      P   V
Sbjct: 229 DQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNV 288

Query: 474 FDLSKRSILND-ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLI 532
                       +T+ C A      +                        +  L      
Sbjct: 289 ILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQ-----------PLGPRAQLLLK----- 332

Query: 533 INDPRQVEDRGSYHCKASNKFGSII---SESVQLAFGFIGEFNLKRAPEIGNQNWGKA-- 587
                  ++  S+ C A+ +    +   +++ +L   +    + +  P            
Sbjct: 333 ---ATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQT 389

Query: 588 MFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 647
             C    N P       +D     +   + V V+ D             G Y C  +S  
Sbjct: 390 PMCQAWGN-PLPELKCLKDGTFP-LPIGESVTVTRD-----------LEGTYLCRARSTQ 436

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 80.7 bits (198), Expect = 5e-16
 Identities = 47/392 (11%), Positives = 97/392 (24%), Gaps = 86/392 (21%)

Query: 210 NDITLSCYA-GGYP--NPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQV 266
            ++TL C   GG P  N +    + +             L  +        +      + 
Sbjct: 102 KNLTLRCQVEGGAPRANLTVVLLRGE-----------KELKREPAVGEPAEVTTTVLVRR 150

Query: 267 ED-RGSYHCKASNKFGS---IISESVQLAFGFIGEFNLKRAPEIGNQNWGKA-----MFC 317
           +    ++ C+           + E+    +           P++ +    +      + C
Sbjct: 151 DHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVC 210

Query: 318 DPPTNYPG--VNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVS 375
                +P      + A                    A      E       +C V     
Sbjct: 211 SLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGN- 269

Query: 376 DTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTR 435
                     + ++         FP             G +V ++C A      + N   
Sbjct: 270 --QSQETLQTVTIYS--------FPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVP 319

Query: 436 RGSPLPRN-------------AYF---------ENFNRILTIPNVKMRGPYFIKQPTDVV 473
                PR              ++          +  ++  T     + GP   ++     
Sbjct: 320 AQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGN 379

Query: 474 FDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLII 533
           +   + S     T  C A G P P  +  K+                          L I
Sbjct: 380 WTWPENS---QQTPMCQAWGNPLPELKCLKDG----------------------TFPLPI 414

Query: 534 NDPRQV--EDRGSYHCKASNKFGSIISESVQL 563
            +   V  +  G+Y C+A +  G  ++  V +
Sbjct: 415 GESVTVTRDLEGTYLCRARSTQGE-VTREVTV 445

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score =  105 bits (262), Expect = 5e-25
 Identities = 45/288 (15%), Positives = 78/288 (27%), Gaps = 41/288 (14%)

Query: 484 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 543
            ++L+C           W  + Y              ++         I     +    G
Sbjct: 29  TLSLTCID----PDFVRWTFKTYF-------------NEMVENKKNEWIQEKA-EATRTG 70

Query: 544 SYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYW 603
           +Y C  SN   S I   V+       +  L   P  G ++    + C P T+     Y  
Sbjct: 71  TYTCSNSNGLTSSIYVFVRDP----AKLFLVGLPLFGKEDSDALVRC-PLTDPQVSQYSL 125

Query: 604 ARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFP 663
                 +   +   V     G    +           C  Q   +    +   F LKV  
Sbjct: 126 IECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDK--FTLKVRE 183

Query: 664 HSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVP-SYNWTRRGSPLP-------- 714
                    P           K GD   + C         +  W +              
Sbjct: 184 AIKA----IPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHN 239

Query: 715 ---RNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 759
              R  +       LTI + +V+D G ++C A+N   +   + T+ + 
Sbjct: 240 SWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVV 287

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 77.8 bits (191), Expect = 9e-16
 Identities = 37/271 (13%), Positives = 63/271 (23%), Gaps = 55/271 (20%)

Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMR--GPY----- 464
           +AGD + L C+          WT +      N   EN          +    G Y     
Sbjct: 25  EAGDTLSLTCIDPD----FVRWTFKTYF---NEMVENKKNEWIQEKAEATRTGTYTCSNS 77

Query: 465 ---------FIKQPTDVVFDLSKRSILN---DITLSCYAGGYPNPSYEWFKEDYVQDRLV 512
                    F++ P   +F +          D  + C         Y   + D       
Sbjct: 78  NGLTSSIYVFVRDP-AKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECD------- 129

Query: 513 ANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFN 572
                P            + I + ++   R    C A      + S+   L         
Sbjct: 130 -GKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTL----KVREA 184

Query: 573 LKRAPEIGNQNWGKA--------MFCDPPTNYPGVNYYWARDY--------FPNFVEEDK 616
           +K  P +                + C        VN  W +            +      
Sbjct: 185 IKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRG 244

Query: 617 RVFVSYDGALYFSALEQIDAGNYSCNVQSKV 647
                    L  S+    D+G + C   +  
Sbjct: 245 DFNYERQETLTISSARVDDSGVFMCYANNTF 275

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 76.3 bits (187), Expect = 3e-15
 Identities = 39/268 (14%), Positives = 66/268 (24%), Gaps = 43/268 (16%)

Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
            ++L+C           W  + Y              ++         I     +    G
Sbjct: 29  TLSLTCID----PDFVRWTFKTYF-------------NEMVENKKNEWIQEKA-EATRTG 70

Query: 271 SYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYW 330
           +Y C  SN   S I   V+       +  L   P  G ++    + C P T+     Y  
Sbjct: 71  TYTCSNSNGLTSSIYVFVRDP----AKLFLVGLPLFGKEDSDALVRC-PLTDPQVSQYSL 125

Query: 331 ARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFP 390
                 +   +   V     G    +           C  Q   +    +   F LKV  
Sbjct: 126 IECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDK--FTLKVRE 183

Query: 391 HSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVP-SYNWTRRGSPLP-------- 441
                    P           K GD   + C         +  W +              
Sbjct: 184 AIKA----IPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHN 239

Query: 442 ---RNAYFENFNRILTIPNVKMR--GPY 464
              R  +       LTI + ++   G +
Sbjct: 240 SWHRGDFNYERQETLTISSARVDDSGVF 267

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 75.2 bits (184), Expect = 6e-15
 Identities = 21/115 (18%), Positives = 33/115 (28%), Gaps = 10/115 (8%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRAS 744
           +AGD + L C+          WT +      N   EN          +    G Y C  S
Sbjct: 25  EAGDTLSLTCIDPD----FVRWTFKTYF---NEMVENKKNEWIQEKAEATRTGTYTCSNS 77

Query: 745 NDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNG 799
           N  +   SS+ + ++      +          +D    C         YS     
Sbjct: 78  NGLT---SSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECD 129

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 63.6 bits (154), Expect = 5e-11
 Identities = 22/180 (12%), Positives = 39/180 (21%), Gaps = 28/180 (15%)

Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
           D  + C         Y   + D            P            + I + ++   R 
Sbjct: 108 DALVRCPLTDPQVSQYSLIECD--------GKSLPTDLTFVPNPKAGITIKNVKRAYHRL 159

Query: 271 SYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKA--------MFCDPPTN 322
              C A      + S+   L         +K  P +                + C     
Sbjct: 160 CVRCAAQRDGTWLHSDKFTL----KVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDV 215

Query: 323 YPGVNYYWARDY--------FPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 374
              VN  W +            +               L  S+    D+G + C   +  
Sbjct: 216 STSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTF 275

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 50.5 bits (120), Expect = 9e-07
 Identities = 22/138 (15%), Positives = 39/138 (28%), Gaps = 16/138 (11%)

Query: 155 FICEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITL 214
             C A             + ++ + +    K    P      T  +            T+
Sbjct: 161 VRCAAQRDGTWL-----HSDKFTLKVREAIKAI--PVVSVPETSHLLKKGDT-----FTV 208

Query: 215 SCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPLSDKRFTLS-GGNLIINDPRQVEDRGSY 272
            C         +  W K +     +     +      F       L I+  R  +D G +
Sbjct: 209 VCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARV-DDSGVF 267

Query: 273 HCKASNKFGSIISESVQL 290
            C A+N FGS  + +  L
Sbjct: 268 MCYANNTFGS-ANVTTTL 284

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score =  102 bits (255), Expect = 8e-25
 Identities = 45/190 (23%), Positives = 70/190 (36%), Gaps = 16/190 (8%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           P  ++ P+D++    +       TL+C A G P P+ EW+K        V    D     
Sbjct: 10  PRIVEHPSDLIVSKGE-----PATLNCKAEGRPTPTIEWYKGG----ERVETDKDDPRSH 60

Query: 250 RFTLSGGNLII----NDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIG-EFNLKRAP 304
           R  L  G+L      +  +   D G Y C A N  G  +S    L    +  +F    + 
Sbjct: 61  RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSD 120

Query: 305 EIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAG 364
            +        M C PP  +P     W +D  P  +++         G L  +   + DAG
Sbjct: 121 VMVAVGEPAVMECQPPRGHPEPTISWKKDGSP--LDDKDERITIRGGKLMITYTRKSDAG 178

Query: 365 NYSCNVQSKV 374
            Y C   + V
Sbjct: 179 KYVCVGTNMV 188

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score =  102 bits (255), Expect = 8e-25
 Identities = 45/190 (23%), Positives = 70/190 (36%), Gaps = 16/190 (8%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
           P  ++ P+D++    +       TL+C A G P P+ EW+K        V    D     
Sbjct: 10  PRIVEHPSDLIVSKGE-----PATLNCKAEGRPTPTIEWYKGG----ERVETDKDDPRSH 60

Query: 523 RFTLSGGNLII----NDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIG-EFNLKRAP 577
           R  L  G+L      +  +   D G Y C A N  G  +S    L    +  +F    + 
Sbjct: 61  RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSD 120

Query: 578 EIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAG 637
            +        M C PP  +P     W +D  P  +++         G L  +   + DAG
Sbjct: 121 VMVAVGEPAVMECQPPRGHPEPTISWKKDGSP--LDDKDERITIRGGKLMITYTRKSDAG 178

Query: 638 NYSCNVQSKV 647
            Y C   + V
Sbjct: 179 KYVCVGTNMV 188

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 94.9 bits (236), Expect = 3e-22
 Identities = 44/207 (21%), Positives = 70/207 (33%), Gaps = 60/207 (28%)

Query: 402 NFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI---- 452
           +FP    E P       G+   L C A G P P+  W + G  +  +      +R+    
Sbjct: 7   DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPS 66

Query: 453 --LTIPN---------------------------------VKMRGPYFIKQPTDVVFDLS 477
             L                                     V +    F + P+DV+  + 
Sbjct: 67  GSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVG 126

Query: 478 KRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDP 536
           +        + C    G+P P+  W K+         + +D   D+R T+ GG L+I   
Sbjct: 127 E-----PAVMECQPPRGHPEPTISWKKDG--------SPLDD-KDERITIRGGKLMITYT 172

Query: 537 RQVEDRGSYHCKASNKFGSIISESVQL 563
           R+  D G Y C  +N  G   SE  +L
Sbjct: 173 RK-SDAGKYVCVGTNMVGERESEVAEL 198

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 83.3 bits (206), Expect = 3e-18
 Identities = 31/145 (21%), Positives = 52/145 (35%), Gaps = 19/145 (13%)

Query: 675 NFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRIL--- 726
           +FP    E P       G+   L C A G P P+  W + G  +  +      +R+L   
Sbjct: 7   DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPS 66

Query: 727 --------TIPNVKVEDQGEYICRASNDR-SALESSVTISIQAE-PNFTIPLTDKHMDNQ 776
                           D+G Y+C A N    A+    ++ +     +F    +D  +   
Sbjct: 67  GSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVG 126

Query: 777 ADLTWTCEA-FGVPDVTYSWFRNGE 800
                 C+   G P+ T SW ++G 
Sbjct: 127 EPAVMECQPPRGHPEPTISWKKDGS 151

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 79.1 bits (195), Expect = 7e-17
 Identities = 38/192 (19%), Positives = 63/192 (32%), Gaps = 38/192 (19%)

Query: 596 YPGVNYYWARDYFP---NFVEEDKRVFVSYDGALYFSALEQI-----DAGNYSCNVQSK- 646
            P     W +       +  +      +   G+L+F  +        D G Y C  ++  
Sbjct: 36  RPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYL 95

Query: 647 ---VSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLEC-VAF 697
              VS          L+V                  F + P       G+   +EC    
Sbjct: 96  GEAVSHDAS------LEV------------AILRDDFRQNPSDVMVAVGEPAVMECQPPR 137

Query: 698 GYPVPSYNWTRRGSPLPRNAYFENF-NRILTIPNVKVEDQGEYICRASNDRSALESSV-T 755
           G+P P+ +W + GSPL             L I   +  D G+Y+C  +N     ES V  
Sbjct: 138 GHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAE 197

Query: 756 ISIQAEPNFTIP 767
           +++   P+F   
Sbjct: 198 LTVLERPSFVKA 209

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 72.5 bits (178), Expect = 1e-14
 Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 16/102 (15%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
             F + P+DV+  + +        + C    G+P P+  W K+         + +D   D
Sbjct: 112 DDFRQNPSDVMVAVGE-----PAVMECQPPRGHPEPTISWKKDG--------SPLDD-KD 157

Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
           +R T+ GG L+I   R+  D G Y C  +N  G   SE  +L
Sbjct: 158 ERITIRGGKLMITYTRK-SDAGKYVCVGTNMVGERESEVAEL 198

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 28/153 (18%), Positives = 47/153 (30%), Gaps = 42/153 (27%)

Query: 323 YPGVNYYWARDYFP---NFVEEDKRVFVSYDGALYFSALEQI-----DAGNYSCNVQSK- 373
            P     W +       +  +      +   G+L+F  +        D G Y C  ++  
Sbjct: 36  RPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYL 95

Query: 374 ---VSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLEC-VAF 424
              VS          L+V                  F + P       G+   +EC    
Sbjct: 96  GEAVSHDAS------LEV------------AILRDDFRQNPSDVMVAVGEPAVMECQPPR 137

Query: 425 GYPVPSYNWTRRGSPLPRNAYFENFNRILTIPN 457
           G+P P+ +W + GSPL         +  +TI  
Sbjct: 138 GHPEPTISWKKDGSPLDDK------DERITIRG 164

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score =  102 bits (255), Expect = 1e-24
 Identities = 53/199 (26%), Positives = 79/199 (39%), Gaps = 23/199 (11%)

Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 246
            + P  I+ PTD+V   ++       TL+C   G P P+ EWFK+       V+   +  
Sbjct: 7   YQSPRIIEHPTDLVVKKNE-----PATLNCKVEGKPEPTIEWFKDG----EPVST--NEK 55

Query: 247 SDKRFTLSGGNLIIN---DPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRA 303
              R     G L        ++ +D G Y C A N+ G  +S    L    + + + +  
Sbjct: 56  KSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRD-DFRVE 114

Query: 304 PEIGNQNWGK-AMF-CDPPTNYPGVNYYWARDYFP------NFVEEDKRVFVSYDGALYF 355
           P+      G+ A+  C PP   P     W +D  P             RV +   G L  
Sbjct: 115 PKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLI 174

Query: 356 SALEQIDAGNYSCNVQSKV 374
           S +E ID GNY C  Q+ V
Sbjct: 175 SNVEPIDEGNYKCIAQNLV 193

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score =  101 bits (254), Expect = 1e-24
 Identities = 53/196 (27%), Positives = 78/196 (39%), Gaps = 23/196 (11%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
           P  I+ PTD+V   ++       TL+C   G P P+ EWFK+       V+   +     
Sbjct: 10  PRIIEHPTDLVVKKNE-----PATLNCKVEGKPEPTIEWFKDG----EPVST--NEKKSH 58

Query: 523 RFTLSGGNLIIN---DPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEI 579
           R     G L        ++ +D G Y C A N+ G  +S    L    + + + +  P+ 
Sbjct: 59  RVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRD-DFRVEPKD 117

Query: 580 GNQNWGK-AMF-CDPPTNYPGVNYYWARDYFP------NFVEEDKRVFVSYDGALYFSAL 631
                G+ A+  C PP   P     W +D  P             RV +   G L  S +
Sbjct: 118 TRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNV 177

Query: 632 EQIDAGNYSCNVQSKV 647
           E ID GNY C  Q+ V
Sbjct: 178 EPIDEGNYKCIAQNLV 193

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 92.2 bits (229), Expect = 3e-21
 Identities = 39/187 (20%), Positives = 59/187 (31%), Gaps = 44/187 (23%)

Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI--------LTIPNVKMR---- 461
            +   L C   G P P+  W + G P+  N    +  +          T+   K +    
Sbjct: 24  NEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGE 83

Query: 462 ------------------------GPYFIKQPTDVVFDLSKRSILNDITLSCY-AGGYPN 496
                                      F  +P D      +        L C    G P 
Sbjct: 84  YWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGE-----TALLECGPPKGIPE 138

Query: 497 PSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI 556
           P+  W K+    D L A      S +   + GGNL+I++     D G+Y C A N  G+ 
Sbjct: 139 PTLIWIKDGVPLDDLKAMSFGA-SSRVRIVDGGNLLISNVEP-IDEGNYKCIAQNLVGTR 196

Query: 557 ISESVQL 563
            S   +L
Sbjct: 197 ESSYAKL 203

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 84.9 bits (210), Expect = 8e-19
 Identities = 28/125 (22%), Positives = 46/125 (36%), Gaps = 11/125 (8%)

Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI--------LTIPNVKVEDQGE 738
            +   L C   G P P+  W + G P+  N    +  +          T+   K +D GE
Sbjct: 24  NEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGE 83

Query: 739 YICRASNDR-SALESSVTISIQA-EPNFTIPLTDKHMDNQADLTWTC-EAFGVPDVTYSW 795
           Y C A N    A+    ++ I     +F +   D  +         C    G+P+ T  W
Sbjct: 84  YWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIW 143

Query: 796 FRNGE 800
            ++G 
Sbjct: 144 IKDGV 148

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 76.4 bits (188), Expect = 7e-16
 Identities = 48/193 (24%), Positives = 67/193 (34%), Gaps = 35/193 (18%)

Query: 594 TNYPGVNYYWARDYFP-NFVEEDKRVFVSYDGALYFSALEQI----DAGNYSCNVQSKVS 648
              P     W +D  P +  E+        DGAL+F    Q     D G Y C  +++V 
Sbjct: 34  EGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVG 93

Query: 649 DTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECV-AFGYPVP 702
                           S    L+        F   PK      G+   LEC    G P P
Sbjct: 94  QA-------------VSRHASLQI-AVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEP 139

Query: 703 SYNWTRRGSPLP--RNAYFENFNRI-------LTIPNVKVEDQGEYICRASNDRSALESS 753
           +  W + G PL   +   F   +R+       L I NV+  D+G Y C A N     ESS
Sbjct: 140 TLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESS 199

Query: 754 -VTISIQAEPNFT 765
              + +Q +    
Sbjct: 200 YAKLIVQVKAAAH 212

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 72.6 bits (178), Expect = 2e-14
 Identities = 28/102 (27%), Positives = 40/102 (39%), Gaps = 8/102 (7%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCY-AGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
             F  +P D      +        L C    G P P+  W K+    D L A      S 
Sbjct: 109 DDFRVEPKDTRVAKGE-----TALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGA-SS 162

Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
           +   + GGNL+I++     D G+Y C A N  G+  S   +L
Sbjct: 163 RVRIVDGGNLLISNVEP-IDEGNYKCIAQNLVGTRESSYAKL 203

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 12/39 (30%), Positives = 17/39 (43%)

Query: 762 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
           P      TD  +      T  C+  G P+ T  WF++GE
Sbjct: 10  PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGE 48

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score =  100 bits (250), Expect = 4e-24
 Identities = 29/132 (21%), Positives = 42/132 (31%), Gaps = 15/132 (11%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFEN------------FNRILTIPNVK 732
              + V+L C   G+  P   W        R   + N                +T  +V 
Sbjct: 17  PENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVT 76

Query: 733 VEDQGEYICRASN--DRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTC-EAFGVP 789
            ED G Y C  S     S  E  V + +   P+                  TC E  G P
Sbjct: 77  REDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSP 136

Query: 790 DVTYSWFRNGEL 801
              Y+WF++G +
Sbjct: 137 PSEYTWFKDGIV 148

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 91.9 bits (228), Expect = 3e-21
 Identities = 40/181 (22%), Positives = 57/181 (31%), Gaps = 22/181 (12%)

Query: 210 NDITLSCYAGGYPNPSYEWFKED--YVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 267
           N + LSC   G+ +P  EW  +     +     N I    + R T     +      + E
Sbjct: 20  NPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTR-E 78

Query: 268 DRGSYHCKASNKFGSIISE-----SVQLAFGFIGEFNLKRAPEIGNQNWGKAMF-CDPPT 321
           D G+Y C  S + G+   E      V +            A   GN+    A+  C    
Sbjct: 79  DTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATI-GNR----AVLTCSEQD 133

Query: 322 NYPGVNYYWARD--------YFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSK 373
             P   Y W +D                   V     G L F  L   D G YSC  ++ 
Sbjct: 134 GSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNG 193

Query: 374 V 374
            
Sbjct: 194 Y 194

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 88.9 bits (220), Expect = 3e-20
 Identities = 32/194 (16%), Positives = 52/194 (26%), Gaps = 49/194 (25%)

Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFEN------------FNRILTIPNVK 459
              + V+L C   G+  P   W        R   + N                +T  +V 
Sbjct: 17  PENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVT 76

Query: 460 MR--G--------------------------PYFIKQPTDVVFDLSKRSILNDITLSCYA 491
               G                          P            +      N   L+C  
Sbjct: 77  REDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIG-----NRAVLTCSE 131

Query: 492 -GGYPNPSYEWFKEDY-VQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKA 549
             G P   Y WFK+   +     +      S      + G L+ +      D G Y C+A
Sbjct: 132 QDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSA-SDTGEYSCEA 190

Query: 550 SNKFGSIISESVQL 563
            N +G+ ++ S  +
Sbjct: 191 RNGYGTPMT-SNAV 203

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 83.9 bits (207), Expect = 2e-18
 Identities = 33/184 (17%), Positives = 53/184 (28%), Gaps = 40/184 (21%)

Query: 603 WARD---------YFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRN 653
           W  D         Y        +         + F ++ + D G Y+C V  +    G +
Sbjct: 38  WKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEG---GNS 94

Query: 654 GPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLEC-VAFGYPVPSYNWT 707
                +K+               P + P          G++  L C    G P   Y W 
Sbjct: 95  YGEVKVKLIVL-----------VPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWF 143

Query: 708 RRGSPLPRNA-----------YFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI 756
           + G  +P N                    L    +   D GEY C A N      +S  +
Sbjct: 144 KDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAV 203

Query: 757 SIQA 760
            ++A
Sbjct: 204 RMEA 207

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 63.1 bits (153), Expect = 2e-11
 Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 9/103 (8%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDY-VQDRLVANLIDPLS 247
           P            +      N   L+C    G P   Y WFK+   +     +      S
Sbjct: 108 PSKPTVNIPSSATIG-----NRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNS 162

Query: 248 DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
                 + G L+ +      D G Y C+A N +G+ ++ S  +
Sbjct: 163 SYVLNPTTGELVFDPLSA-SDTGEYSCEARNGYGTPMT-SNAV 203

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 99.8 bits (249), Expect = 4e-24
 Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 14/136 (10%)

Query: 679 TFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA------YFENFNRILT 727
           TF +  +      G     E    G+PVP  +W R G  +  +        F +    LT
Sbjct: 7   TFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLT 66

Query: 728 IPNVKVEDQGEYICRASNDRSALESSVTISIQAE---PNFTIPLTDKHMDNQADLTWTCE 784
           IP V   + G Y  +A+N      S+  + ++AE   PNF   L    +   + +     
Sbjct: 67  IPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVR 126

Query: 785 AFGVPDVTYSWFRNGE 800
             G+P     ++R+G 
Sbjct: 127 VTGIPTPVVKFYRDGA 142

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 85.2 bits (211), Expect = 4e-19
 Identities = 37/200 (18%), Positives = 62/200 (31%), Gaps = 57/200 (28%)

Query: 406 TFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA------YFENFNRILT 454
           TF +  +      G     E    G+PVP  +W R G  +  +        F +    LT
Sbjct: 7   TFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLT 66

Query: 455 IPNVKM-----------------------------RGPYFIKQPTDVVFDLSKRSILNDI 485
           IP V                                 P F+++   +            +
Sbjct: 67  IPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGS-----QV 121

Query: 486 TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGN--LIINDPRQVEDRG 543
            L     G P P  +++++           I    D + +  G    L+I +    ED G
Sbjct: 122 RLQVRVTGIPTPVVKFYRDG--------AEIQSSLDFQISQEGDLYSLLIAEA-YPEDSG 172

Query: 544 SYHCKASNKFGSIISESVQL 563
           +Y   A+N  G   S + +L
Sbjct: 173 TYSVNATNSVGRATS-TAEL 191

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 82.1 bits (203), Expect = 5e-18
 Identities = 37/172 (21%), Positives = 58/172 (33%), Gaps = 31/172 (18%)

Query: 603 WARDYFPNFVEEDKRVFVSYDG---ALYFSALEQIDAGNYSC---NVQSKVSDTGRNGPF 656
           W RD           V +S+      L   A+ + ++G YS    N   + + T      
Sbjct: 39  WFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAE---- 94

Query: 657 FPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGS 711
             L V   +           P  F +  +      G +VRL+    G P P   + R G+
Sbjct: 95  --LLVKAETA----------PPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGA 142

Query: 712 PLPRNAYF----ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 759
            +  +  F    E     L I     ED G Y   A+N      S+  + +Q
Sbjct: 143 EIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 74.0 bits (182), Expect = 3e-15
 Identities = 39/203 (19%), Positives = 62/203 (30%), Gaps = 44/203 (21%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           P F +    VV            T   +  G+P P   WF++          +I   +  
Sbjct: 6   PTFTQPLQSVVVLEGS-----TATFEAHISGFPVPEVSWFRDG--------QVISTSTLP 52

Query: 250 RFTLS----GGNLIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFG---FIGEFN 299
              +S       L I       + G Y  KA+N  G   S     V+       F+    
Sbjct: 53  GVQISFSDGRAKLTIPAV-TKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQ 111

Query: 300 LKRAPEIGNQNWGKAMF-C----DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDG--- 351
                + G+Q              P    P V   + RD     ++      +S +G   
Sbjct: 112 SMTVRQ-GSQ----VRLQVRVTGIPT---PVV--KFYRDGAE--IQSSLDFQISQEGDLY 159

Query: 352 ALYFSALEQIDAGNYSCNVQSKV 374
           +L  +     D+G YS N  + V
Sbjct: 160 SLLIAEAYPEDSGTYSVNATNSV 182

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 74.0 bits (182), Expect = 3e-15
 Identities = 39/203 (19%), Positives = 62/203 (30%), Gaps = 44/203 (21%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
           P F +    VV            T   +  G+P P   WF++          +I   +  
Sbjct: 6   PTFTQPLQSVVVLEGS-----TATFEAHISGFPVPEVSWFRDG--------QVISTSTLP 52

Query: 523 RFTLS----GGNLIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFG---FIGEFN 572
              +S       L I       + G Y  KA+N  G   S     V+       F+    
Sbjct: 53  GVQISFSDGRAKLTIPAV-TKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQ 111

Query: 573 LKRAPEIGNQNWGKAMF-C----DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDG--- 624
                + G+Q              P    P V   + RD     ++      +S +G   
Sbjct: 112 SMTVRQ-GSQ----VRLQVRVTGIPT---PVV--KFYRDGAE--IQSSLDFQISQEGDLY 159

Query: 625 ALYFSALEQIDAGNYSCNVQSKV 647
           +L  +     D+G YS N  + V
Sbjct: 160 SLLIAEAYPEDSGTYSVNATNSV 182

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 60.9 bits (148), Expect = 8e-11
 Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 17/103 (16%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           P F+++   +            + L     G P P  +++++           I    D 
Sbjct: 104 PNFVQRLQSMTVRQGS-----QVRLQVRVTGIPTPVVKFYRDG--------AEIQSSLDF 150

Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
           + +  G    L+I +    ED G+Y   A+N  G   S + +L
Sbjct: 151 QISQEGDLYSLLIAEA-YPEDSGTYSVNATNSVGRATS-TAEL 191

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 56.3 bits (136), Expect = 4e-09
 Identities = 29/145 (20%), Positives = 46/145 (31%), Gaps = 31/145 (21%)

Query: 330 WARDYFPNFVEEDKRVFVSYDG---ALYFSALEQIDAGNYSC---NVQSKVSDTGRNGPF 383
           W RD           V +S+      L   A+ + ++G YS    N   + + T      
Sbjct: 39  WFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAE---- 94

Query: 384 FPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGS 438
             L V   +           P  F +  +      G +VRL+    G P P   + R G+
Sbjct: 95  --LLVKAETA----------PPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGA 142

Query: 439 PLPRNAYF----ENFNRILTIPNVK 459
            +  +  F    E     L I    
Sbjct: 143 EIQSSLDFQISQEGDLYSLLIAEAY 167

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 99.1 bits (247), Expect = 6e-24
 Identities = 30/134 (22%), Positives = 52/134 (38%), Gaps = 12/134 (8%)

Query: 679 TFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPL---PRNAYFENFNRILTIPN 730
           TF E         G+   + C     P P+ +W      +     N +    N  L I N
Sbjct: 4   TFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILN 63

Query: 731 VKVEDQGEYICRASND--RSALESSVTISIQAEPNFTIP--LTDKHMDNQADLTWTCEAF 786
           +   D+G Y C    +         + + +   P  ++P    +   +   ++T++C A 
Sbjct: 64  INKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRAS 123

Query: 787 GVPDVTYSWFRNGE 800
           G P+   SWFRNG+
Sbjct: 124 GSPEPAISWFRNGK 137

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 93.7 bits (233), Expect = 4e-22
 Identities = 34/168 (20%), Positives = 57/168 (33%), Gaps = 9/168 (5%)

Query: 596 YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGP 655
            P     W           D R  +  +  L    + + D G Y C  + +         
Sbjct: 29  SPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRD 88

Query: 656 FFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPR 715
              + V         +   N   T       G+++   C A G P P+ +W R G  +  
Sbjct: 89  II-VIVNVPPAISMPQKSFN--ATAER----GEEMTFSCRASGSPEPAISWFRNGKLIEE 141

Query: 716 NAYF--ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAE 761
           N  +  +  N  LT+ N+   D G Y+CRA+N     E    + +  +
Sbjct: 142 NEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 189

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 92.2 bits (229), Expect = 1e-21
 Identities = 37/196 (18%), Positives = 59/196 (30%), Gaps = 53/196 (27%)

Query: 406 TFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPL---PRNAYFENFNRILTIPN 457
           TF E         G+   + C     P P+ +W      +     N +    N  L I N
Sbjct: 4   TFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILN 63

Query: 458 VKM--RGPY----------------------------FIKQPTDVVFDLSKRSILNDITL 487
           +     G Y                              ++  +   +  +     ++T 
Sbjct: 64  INKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGE-----EMTF 118

Query: 488 SCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHC 547
           SC A G P P+  WF+           LI+         S   L + +     D G Y C
Sbjct: 119 SCRASGSPEPAISWFRNG--------KLIEENEKYILKGSNTELTVRNI-INSDGGPYVC 169

Query: 548 KASNKFGSIISESVQL 563
           +A+NK G    +   L
Sbjct: 170 RATNKAGE-DEKQAFL 184

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 86.8 bits (215), Expect = 1e-19
 Identities = 33/189 (17%), Positives = 57/189 (30%), Gaps = 20/189 (10%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
             F +  +   F         D  + C     P P+  W   +          +  +SD 
Sbjct: 3   LTFREVVSPQEFKQG-----EDAEVVCRVSSSPAPAVSWLYHN--------EEVTTISDN 49

Query: 250 RFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIG-EFNLKRAPEIG 307
           RF  L+  NL I +     D G Y C+   +    I     +    +    ++ +     
Sbjct: 50  RFAMLANNNLQILNI-NKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNA 108

Query: 308 NQNWGKA--MFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGN 365
               G+     C   +  P     W R+      E +K +    +  L    +   D G 
Sbjct: 109 TAERGEEMTFSCR-ASGSPEPAISWFRNGKL-IEENEKYILKGSNTELTVRNIINSDGGP 166

Query: 366 YSCNVQSKV 374
           Y C   +K 
Sbjct: 167 YVCRATNKA 175

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 86.8 bits (215), Expect = 1e-19
 Identities = 33/189 (17%), Positives = 57/189 (30%), Gaps = 20/189 (10%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
             F +  +   F         D  + C     P P+  W   +          +  +SD 
Sbjct: 3   LTFREVVSPQEFKQG-----EDAEVVCRVSSSPAPAVSWLYHN--------EEVTTISDN 49

Query: 523 RFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIG-EFNLKRAPEIG 580
           RF  L+  NL I +     D G Y C+   +    I     +    +    ++ +     
Sbjct: 50  RFAMLANNNLQILNI-NKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNA 108

Query: 581 NQNWGKA--MFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGN 638
               G+     C   +  P     W R+      E +K +    +  L    +   D G 
Sbjct: 109 TAERGEEMTFSCR-ASGSPEPAISWFRNGKL-IEENEKYILKGSNTELTVRNIINSDGGP 166

Query: 639 YSCNVQSKV 647
           Y C   +K 
Sbjct: 167 YVCRATNKA 175

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 66.3 bits (162), Expect = 1e-12
 Identities = 29/146 (19%), Positives = 47/146 (32%), Gaps = 11/146 (7%)

Query: 323 YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGP 382
            P     W           D R  +  +  L    + + D G Y C  + +         
Sbjct: 29  SPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRD 88

Query: 383 FFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPR 442
              + V         +   N   T       G+++   C A G P P+ +W R G  +  
Sbjct: 89  II-VIVNVPPAISMPQKSFN--ATAER----GEEMTFSCRASGSPEPAISWFRNGKLIEE 141

Query: 443 NAYF--ENFNRILTIPNVKMR--GPY 464
           N  +  +  N  LT+ N+     GPY
Sbjct: 142 NEKYILKGSNTELTVRNIINSDGGPY 167

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 64.4 bits (157), Expect = 6e-12
 Identities = 28/136 (20%), Positives = 46/136 (33%), Gaps = 23/136 (16%)

Query: 155 FICEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITL 214
           + CE           + R      DI     +P      ++  +   +  +     ++T 
Sbjct: 72  YRCEGR--------VEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGE-----EMTF 118

Query: 215 SCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHC 274
           SC A G P P+  WF+           LI+         S   L + +     D G Y C
Sbjct: 119 SCRASGSPEPAISWFRNG--------KLIEENEKYILKGSNTELTVRNI-INSDGGPYVC 169

Query: 275 KASNKFGSIISESVQL 290
           +A+NK G    +   L
Sbjct: 170 RATNKAGE-DEKQAFL 184

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 7/41 (17%), Positives = 12/41 (29%)

Query: 760 AEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
           +   F   ++ +      D    C     P    SW  + E
Sbjct: 1   SMLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNE 41

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 96.8 bits (241), Expect = 6e-23
 Identities = 36/188 (19%), Positives = 65/188 (34%), Gaps = 19/188 (10%)

Query: 596 YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQI----DAGNYSCNVQSKVSDTG 651
            P  +  W ++       + +   +   G +    +E +    D   Y C  ++ V D  
Sbjct: 33  DPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAV 92

Query: 652 RNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNW 706
                  L ++        K P  FP    + P       G  V + C A G P P+  W
Sbjct: 93  SAD--ATLTIYEGD-----KTPAGFPV-ITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYW 144

Query: 707 TRRGSPLPRNAY-FENFNRILTIPNVKVEDQGEYICRASNDR-SALESSVTISIQAEPNF 764
            +  + +  +   +   +  L I N + EDQG+Y C A N   +    +  + ++     
Sbjct: 145 IKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVG 204

Query: 765 TIPLTDKH 772
           T      H
Sbjct: 205 TKHHHHHH 212

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 95.2 bits (237), Expect = 2e-22
 Identities = 39/193 (20%), Positives = 61/193 (31%), Gaps = 56/193 (29%)

Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLP------------------------------ 441
           + G      C A G P PS  W + G  +                               
Sbjct: 19  RVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDA 78

Query: 442 ------RNAYFENFNR-----ILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCY 490
                  N   +  +      I          P   + P   V ++        + ++C 
Sbjct: 79  PYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGH-----TVLMTCK 133

Query: 491 AGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKAS 550
           A G P P+  W K            +D  S+ R++L  G L I + R+ ED+G Y C A 
Sbjct: 134 AIGNPTPNIYWIKNQ--------TKVDM-SNPRYSLKDGFLQIENSRE-EDQGKYECVAE 183

Query: 551 NKFGSIISESVQL 563
           N  G+  S++  L
Sbjct: 184 NSMGTEHSKATNL 196

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 91.4 bits (227), Expect = 5e-21
 Identities = 41/197 (20%), Positives = 59/197 (29%), Gaps = 29/197 (14%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           P  I++P +    +         +  C A G P PS  W K            +     +
Sbjct: 7   PEIIRKPQNQGVRVGG-----VASFYCAARGDPPPSIVWRKNG--------KKVSGTQSR 53

Query: 250 RFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPE 305
              L        L I   R   D   Y C A N  G  +S    L   + G+      P 
Sbjct: 54  YTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTI-YEGDKTPAGFPV 112

Query: 306 IGNQ------NWGKA--MFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSA 357
           I           G    M C      P  N YW ++     V+     +   DG L    
Sbjct: 113 ITQGPGTRVIEVGHTVLMTC-KAIGNPTPNIYWIKNQTK--VDMSNPRYSLKDGFLQIEN 169

Query: 358 LEQIDAGNYSCNVQSKV 374
             + D G Y C  ++ +
Sbjct: 170 SREEDQGKYECVAENSM 186

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 91.4 bits (227), Expect = 5e-21
 Identities = 41/197 (20%), Positives = 59/197 (29%), Gaps = 29/197 (14%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
           P  I++P +    +         +  C A G P PS  W K            +     +
Sbjct: 7   PEIIRKPQNQGVRVGG-----VASFYCAARGDPPPSIVWRKNG--------KKVSGTQSR 53

Query: 523 RFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPE 578
              L        L I   R   D   Y C A N  G  +S    L   + G+      P 
Sbjct: 54  YTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTI-YEGDKTPAGFPV 112

Query: 579 IGNQ------NWGKA--MFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSA 630
           I           G    M C      P  N YW ++     V+     +   DG L    
Sbjct: 113 ITQGPGTRVIEVGHTVLMTC-KAIGNPTPNIYWIKNQTK--VDMSNPRYSLKDGFLQIEN 169

Query: 631 LEQIDAGNYSCNVQSKV 647
             + D G Y C  ++ +
Sbjct: 170 SREEDQGKYECVAENSM 186

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 84.1 bits (208), Expect = 1e-18
 Identities = 30/131 (22%), Positives = 43/131 (32%), Gaps = 15/131 (11%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAY------FENFNRILTI-PNVKVEDQG 737
           + G      C A G P PS  W + G  +                 IL I P     D  
Sbjct: 19  RVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDA 78

Query: 738 EYICRASNDR-SALESSVTISIQAE-------PNFTIPLTDKHMDNQADLTWTCEAFGVP 789
            Y C A N    A+ +  T++I          P  T     + ++    +  TC+A G P
Sbjct: 79  PYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNP 138

Query: 790 DVTYSWFRNGE 800
                W +N  
Sbjct: 139 TPNIYWIKNQT 149

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 79.4 bits (196), Expect = 7e-17
 Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 15/111 (13%)

Query: 180 IENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLV 239
            E        P   + P   V ++        + ++C A G P P+  W K         
Sbjct: 101 YEGDKTPAGFPVITQGPGTRVIEVGH-----TVLMTCKAIGNPTPNIYWIKNQ------- 148

Query: 240 ANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
              +D  S+ R++L  G L I + R+ ED+G Y C A N  G+  S++  L
Sbjct: 149 -TKVDM-SNPRYSLKDGFLQIENSRE-EDQGKYECVAENSMGTEHSKATNL 196

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 62.1 bits (151), Expect = 5e-11
 Identities = 28/154 (18%), Positives = 51/154 (33%), Gaps = 20/154 (12%)

Query: 323 YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQI----DAGNYSCNVQSKVSDTG 378
            P  +  W ++       + +   +   G +    +E +    D   Y C  ++ V D  
Sbjct: 33  DPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAV 92

Query: 379 RNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNW 433
                  L ++        K P  FP    + P       G  V + C A G P P+  W
Sbjct: 93  SAD--ATLTIYEGD-----KTPAGFPV-ITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYW 144

Query: 434 TRRGSPLPRNAY-FENFNRILTIPNVKMR--GPY 464
            +  + +  +   +   +  L I N +    G Y
Sbjct: 145 IKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKY 178

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 96.3 bits (240), Expect = 6e-23
 Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 11/126 (8%)

Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA------YFENFNRILTIPNVKVEDQGEYI 740
                L C   G+P P   W R+G  +  +        F+     L I +V  +D   Y 
Sbjct: 19  QSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQ 78

Query: 741 CRASNDRSALESSVTISIQAE-----PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSW 795
            RA+N   ++  + ++ ++       P     +   H      ++      G PD   +W
Sbjct: 79  VRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITW 138

Query: 796 FRNGEL 801
            +  +L
Sbjct: 139 QKGQDL 144

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 87.1 bits (216), Expect = 8e-20
 Identities = 33/191 (17%), Positives = 57/191 (29%), Gaps = 57/191 (29%)

Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA------YFENFNRILTIPNV--------- 458
                L C   G+P P   W R+G  +  +        F+     L I +V         
Sbjct: 19  QSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQ 78

Query: 459 ----------------------KMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPN 496
                                 K+  P  ++    V     +      +++     G P+
Sbjct: 79  VRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGE-----VVSIKIPFSGKPD 133

Query: 497 PSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGN----LIINDPRQVEDRGSYHCKASNK 552
           P   W K          +LID  +     +   +    +  N   + +D G Y   A N+
Sbjct: 134 PVITWQKGQ--------DLIDN-NGHYQVIVTRSFTSLVFPNGVER-KDAGFYVVCAKNR 183

Query: 553 FGSIISESVQL 563
           FG     +V+L
Sbjct: 184 FGIDQK-TVEL 193

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 83.2 bits (206), Expect = 2e-18
 Identities = 30/180 (16%), Positives = 56/180 (31%), Gaps = 30/180 (16%)

Query: 596 YPGVNYYWARDYFPNFVEEDKRVFVSYDG---ALYFSALEQIDAGNYSCNVQSK---VSD 649
           +P     W R       +  K     + G    L  +++   DA  Y     ++   VS 
Sbjct: 31  HPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSG 90

Query: 650 TGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSY 704
           T        L+V                    E         G+ V ++    G P P  
Sbjct: 91  TAS------LEV--------EVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVI 136

Query: 705 NWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 759
            W +    +  N ++      +F  ++    V+ +D G Y+  A N     + +V + + 
Sbjct: 137 TWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 72.4 bits (178), Expect = 9e-15
 Identities = 33/197 (16%), Positives = 66/197 (33%), Gaps = 29/197 (14%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           P+F ++  ++           + TL C   G+P P  +W+++           I     K
Sbjct: 5   PHFKEELRNLNVRYQS-----NATLVCKVTGHPKPIVKWYRQG--------KEIIADGLK 51

Query: 250 -RFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKR 302
            R     G    LII      +D   Y  +A+N+ GS+       V++         L+ 
Sbjct: 52  YRIQEFKGGYHQLIIASV-TDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEG 110

Query: 303 APEIGNQNWGKAMF-CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDG----ALYFSA 357
              +             P +  P     W +      ++ +    V         ++ + 
Sbjct: 111 MGAVHALRGEVVSIKI-PFSGKPDPVITWQKGQDL--IDNNGHYQVIVTRSFTSLVFPNG 167

Query: 358 LEQIDAGNYSCNVQSKV 374
           +E+ DAG Y    +++ 
Sbjct: 168 VERKDAGFYVVCAKNRF 184

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 72.4 bits (178), Expect = 9e-15
 Identities = 33/197 (16%), Positives = 66/197 (33%), Gaps = 29/197 (14%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
           P+F ++  ++           + TL C   G+P P  +W+++           I     K
Sbjct: 5   PHFKEELRNLNVRYQS-----NATLVCKVTGHPKPIVKWYRQG--------KEIIADGLK 51

Query: 523 -RFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKR 575
            R     G    LII      +D   Y  +A+N+ GS+       V++         L+ 
Sbjct: 52  YRIQEFKGGYHQLIIASV-TDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEG 110

Query: 576 APEIGNQNWGKAMF-CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDG----ALYFSA 630
              +             P +  P     W +      ++ +    V         ++ + 
Sbjct: 111 MGAVHALRGEVVSIKI-PFSGKPDPVITWQKGQDL--IDNNGHYQVIVTRSFTSLVFPNG 167

Query: 631 LEQIDAGNYSCNVQSKV 647
           +E+ DAG Y    +++ 
Sbjct: 168 VERKDAGFYVVCAKNRF 184

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 63.2 bits (154), Expect = 2e-11
 Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 20/105 (19%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           P  ++    V     +      +++     G P+P   W K          +LID  +  
Sbjct: 105 PKTLEGMGAVHALRGE-----VVSIKIPFSGKPDPVITWQKGQ--------DLIDN-NGH 150

Query: 250 RFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
              +   +    +  N   + +D G Y   A N+FG     +V+L
Sbjct: 151 YQVIVTRSFTSLVFPNGVER-KDAGFYVVCAKNRFGIDQK-TVEL 193

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 59.0 bits (143), Expect = 4e-10
 Identities = 26/160 (16%), Positives = 46/160 (28%), Gaps = 32/160 (20%)

Query: 323 YPGVNYYWARDYFPNFVEEDKRVFVSYDG---ALYFSALEQIDAGNYSCNVQSK---VSD 376
           +P     W R       +  K     + G    L  +++   DA  Y     ++   VS 
Sbjct: 31  HPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSG 90

Query: 377 TGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSY 431
           T        L+V                    E         G+ V ++    G P P  
Sbjct: 91  TAS------LEV--------EVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVI 136

Query: 432 NWTRRGSPLPRNAYF-----ENFNRILTIPNVKM--RGPY 464
            W +    +  N ++      +F  ++    V+    G Y
Sbjct: 137 TWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFY 176

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 11/39 (28%), Positives = 20/39 (51%)

Query: 762 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
           P+F   L + ++  Q++ T  C+  G P     W+R G+
Sbjct: 5   PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGK 43

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 96.9 bits (241), Expect = 8e-23
 Identities = 23/125 (18%), Positives = 45/125 (36%), Gaps = 10/125 (8%)

Query: 686 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-----YFENFNRILTIPNVKVEDQGEYI 740
           A + V+  C A G P+P+  W + G    +          N +  L + +V   D+G Y 
Sbjct: 33  AANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYT 92

Query: 741 CRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQ-----ADLTWTCEAFGVPDVTYSW 795
           C   N+  ++  +  + +         L      N       D+ + C+ +        W
Sbjct: 93  CVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQW 152

Query: 796 FRNGE 800
            ++ E
Sbjct: 153 IKHVE 157

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 83.0 bits (205), Expect = 5e-18
 Identities = 32/192 (16%), Positives = 53/192 (27%), Gaps = 48/192 (25%)

Query: 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-----YFENFNRILTIPNVKM--RGPY- 464
           A + V+  C A G P+P+  W + G    +          N +  L + +V    +G Y 
Sbjct: 33  AANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYT 92

Query: 465 ----------------------------FIKQPTDVVFDLSKRSILNDITLSCYAGGYPN 496
                                           P +    +       D+   C       
Sbjct: 93  CVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGG-----DVEFVCKVYSDAQ 147

Query: 497 PSYEWFKEDYVQDRLVANLIDPL-----SDKRFTLSGGNLIINDPRQVEDRGSYHCKASN 551
           P  +W K              P           + +   L + +  +  D G Y CK SN
Sbjct: 148 PHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTE-ADAGEYICKVSN 206

Query: 552 KFGSIISESVQL 563
             G   ++S  L
Sbjct: 207 YIGQ-ANQSAWL 217

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 82.3 bits (203), Expect = 1e-17
 Identities = 29/166 (17%), Positives = 51/166 (30%), Gaps = 31/166 (18%)

Query: 617 RVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNF 676
               +   +L   ++   D GNY+C V+++    G     + L V        ++   + 
Sbjct: 69  YKVRNQHWSLIMESVVPSDKGNYTCVVENEY---GSINHTYHLDV--------VERSRHR 117

Query: 677 PKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI------ 725
           P      P       G  V   C  +    P   W +           +    +      
Sbjct: 118 PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHS 177

Query: 726 ---------LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEP 762
                    L + NV   D GEYIC+ SN       S  +++  + 
Sbjct: 178 GINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQ 223

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 71.1 bits (174), Expect = 5e-14
 Identities = 39/212 (18%), Positives = 65/212 (30%), Gaps = 46/212 (21%)

Query: 190 PYFIK----QPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDP 245
           PY+      +        +     N +   C AGG P P+  W K               
Sbjct: 16  PYWTNTEKMEKRLHAVPAA-----NTVKFRCPAGGNPMPTMRWLKNG--------KEFKQ 62

Query: 246 ---LSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKR 302
              +   +      +LI+       D+G+Y C   N++GS I+ +  L    + E +  R
Sbjct: 63  EHRIGGYKVRNQHWSLIMESV-VPSDKGNYTCVVENEYGS-INHTYHLD---VVERSRHR 117

Query: 303 APEIGN--QNW-----GKAMF-CDPPTNYPGVNYYWARDYFPNF------------VEED 342
                    N      G   F C    +    +  W +    N             V + 
Sbjct: 118 PILQAGLPANASTVVGGDVEFVCK-VYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKH 176

Query: 343 KRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 374
             +  S    L    + + DAG Y C V + +
Sbjct: 177 SGINSSNAEVLALFNVTEADAGEYICKVSNYI 208

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 71.1 bits (174), Expect = 5e-14
 Identities = 39/212 (18%), Positives = 65/212 (30%), Gaps = 46/212 (21%)

Query: 463 PYFIK----QPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDP 518
           PY+      +        +     N +   C AGG P P+  W K               
Sbjct: 16  PYWTNTEKMEKRLHAVPAA-----NTVKFRCPAGGNPMPTMRWLKNG--------KEFKQ 62

Query: 519 ---LSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKR 575
              +   +      +LI+       D+G+Y C   N++GS I+ +  L    + E +  R
Sbjct: 63  EHRIGGYKVRNQHWSLIMESV-VPSDKGNYTCVVENEYGS-INHTYHLD---VVERSRHR 117

Query: 576 APEIGN--QNW-----GKAMF-CDPPTNYPGVNYYWARDYFPNF------------VEED 615
                    N      G   F C    +    +  W +    N             V + 
Sbjct: 118 PILQAGLPANASTVVGGDVEFVCK-VYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKH 176

Query: 616 KRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 647
             +  S    L    + + DAG Y C V + +
Sbjct: 177 SGINSSNAEVLALFNVTEADAGEYICKVSNYI 208

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 56.4 bits (136), Expect = 6e-09
 Identities = 20/116 (17%), Positives = 32/116 (27%), Gaps = 14/116 (12%)

Query: 180 IENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLV 239
           +E     P        P +    +       D+   C       P  +W K         
Sbjct: 111 VERSRHRP--ILQAGLPANASTVVGG-----DVEFVCKVYSDAQPHIQWIKHVEKNGSKY 163

Query: 240 ANLIDPL-----SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
                P           + +   L + +  +  D G Y CK SN  G   ++S  L
Sbjct: 164 GPDGLPYLKVLKHSGINSSNAEVLALFNVTE-ADAGEYICKVSNYIGQ-ANQSAWL 217

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 54.1 bits (130), Expect = 4e-08
 Identities = 17/126 (13%), Positives = 36/126 (28%), Gaps = 16/126 (12%)

Query: 344 RVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNF 403
               +   +L   ++   D GNY+C V+++    G     + L V        ++   + 
Sbjct: 69  YKVRNQHWSLIMESVVPSDKGNYTCVVENEY---GSINHTYHLDV--------VERSRHR 117

Query: 404 PKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNV 458
           P      P       G  V   C  +    P   W +           +    +  + + 
Sbjct: 118 PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHS 177

Query: 459 KMRGPY 464
            +    
Sbjct: 178 GINSSN 183

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 97.5 bits (243), Expect = 2e-22
 Identities = 25/128 (19%), Positives = 48/128 (37%), Gaps = 11/128 (8%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA------YFENFNRILTIPNVKVEDQGE 738
           +      L C   G+P P   W R+G  +  +        F+     L I +V  +D   
Sbjct: 17  RYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATV 76

Query: 739 YICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQ-----ADLTWTCEAFGVPDVTY 793
           Y  RA+N   ++  + ++ ++      +P T + M          ++      G PD   
Sbjct: 77  YQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVI 136

Query: 794 SWFRNGEL 801
           +W +  +L
Sbjct: 137 TWQKGQDL 144

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 79.4 bits (196), Expect = 3e-16
 Identities = 32/187 (17%), Positives = 59/187 (31%), Gaps = 45/187 (24%)

Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA------YFENFNRILTIPNVKM--RGP 463
           +      L C   G+P P   W R+G  +  +        F+     L I +V       
Sbjct: 17  RYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATV 76

Query: 464 Y-----------------FIKQPTDVVFDLSKRSILN-------DITLSCYAGGYPNPSY 499
           Y                  ++ P  +    +   +          +++     G P+P  
Sbjct: 77  YQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVI 136

Query: 500 EWFKEDYVQDRLVANLIDPLSDKRFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSI 556
            W K          +LID     +  ++      +  N   + +D G Y   A N+FG  
Sbjct: 137 TWQKGQ--------DLIDNNGHYQVIVTRSFTSLVFPNGV-ERKDAGFYVVCAKNRFGI- 186

Query: 557 ISESVQL 563
             ++V+L
Sbjct: 187 DQKTVEL 193

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 75.6 bits (186), Expect = 6e-15
 Identities = 38/207 (18%), Positives = 68/207 (32%), Gaps = 22/207 (10%)

Query: 588 MFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA---LYFSALEQIDAGNYSC--- 641
           + C   T +P     W R       +  K     + G    L  +++   DA  Y     
Sbjct: 24  LVC-KVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT 82

Query: 642 NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPV 701
           N    VS T        L+V   +     K               G+ V ++    G P 
Sbjct: 83  NQGGSVSGTAS------LEVEVPAKIHLPKTLEGMGAVHA---LRGEVVSIKIPFSGKPD 133

Query: 702 PSYNWTRRGSPLPRNAYFE-----NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI 756
           P   W +    +  N +++     +F  ++    V+ +D G Y+  A N     + +V +
Sbjct: 134 PVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVEL 193

Query: 757 SIQAEPNF-TIPLTDKHMDNQADLTWT 782
            +   P+            +  +LTWT
Sbjct: 194 DVADVPDPPRGVKVSDVSRDSVNLTWT 220

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 66.7 bits (163), Expect = 5e-12
 Identities = 33/196 (16%), Positives = 67/196 (34%), Gaps = 27/196 (13%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           P+F ++  ++           + TL C   G+P P  +W+++           I     K
Sbjct: 5   PHFKEELRNLNVRYQS-----NATLVCKVTGHPKPIVKWYRQG--------KEIIADGLK 51

Query: 250 -RFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKR 302
            R     G    LII      +D   Y  +A+N+ GS+       V++         L+ 
Sbjct: 52  YRIQEFKGGYHQLIIASV-TDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEG 110

Query: 303 APEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA----LYFSAL 358
              +            P +  P     W +      ++ +    V    +    ++ + +
Sbjct: 111 MGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDL--IDNNGHYQVIVTRSFTSLVFPNGV 168

Query: 359 EQIDAGNYSCNVQSKV 374
           E+ DAG Y    +++ 
Sbjct: 169 ERKDAGFYVVCAKNRF 184

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 19/115 (16%)

Query: 179 DIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRL 238
           ++E P KI   P  ++    V            +++     G P+P   W K        
Sbjct: 95  EVEVPAKI-HLPKTLEGMGAVHALRG-----EVVSIKIPFSGKPDPVITWQKGQ------ 142

Query: 239 VANLIDPLSDKRFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
             +LID     +  ++      +  N   + +D G Y   A N+FG    ++V+L
Sbjct: 143 --DLIDNNGHYQVIVTRSFTSLVFPNGV-ERKDAGFYVVCAKNRFGI-DQKTVEL 193

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 94.5 bits (235), Expect = 2e-22
 Identities = 25/124 (20%), Positives = 42/124 (33%), Gaps = 9/124 (7%)

Query: 686 AGDKVRLECVAFGYP-VPSYNWTRR-GSPLPRN------AYFENFNRILTIPNVKVEDQG 737
            G+     C   G       +W    G  L  N       + ++ +  LTI N  ++D G
Sbjct: 16  VGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAG 75

Query: 738 EYICRASNDR-SALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWF 796
            Y C  + +  +  E++V + I  +  F    T +      D    C+       T  W 
Sbjct: 76  IYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWK 135

Query: 797 RNGE 800
             G 
Sbjct: 136 HKGR 139

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 87.6 bits (217), Expect = 6e-20
 Identities = 31/177 (17%), Positives = 52/177 (29%), Gaps = 17/177 (9%)

Query: 590 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSY----DGALYFSALEQIDAGNYSCNVQS 645
           C    +    +  W            +R+ V +       L        DAG Y C V +
Sbjct: 24  CQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTA 83

Query: 646 KVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYN 705
           +            +K+F    F+    P    + F E    G+   + C       P+  
Sbjct: 84  EDGTQSEA--TVNVKIFQKLMFKNA--PTP--QEFKE----GEDAVIVCDVVSSLPPTII 133

Query: 706 WTRRGSPLPRNA---YFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 759
           W  +G  +       +    N  L I  +K  D+G Y C          +   I + 
Sbjct: 134 WKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 85.6 bits (212), Expect = 2e-19
 Identities = 32/183 (17%), Positives = 48/183 (26%), Gaps = 50/183 (27%)

Query: 413 AGDKVRLECVAFGYP-VPSYNWTRR-GSPLPRN------AYFENFNRILTIPNVKM--RG 462
            G+     C   G       +W    G  L  N       + ++ +  LTI N  +   G
Sbjct: 16  VGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAG 75

Query: 463 -------------------------PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP 497
                                      F   PT   F   +     D  + C       P
Sbjct: 76  IYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGE-----DAVIVCDVVSSLPP 130

Query: 498 SYEWFKEDYVQDRLVANLIDPLSDKRFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSI 556
           +  W  +           +    D RF  LS   L I    +  D G+Y C+        
Sbjct: 131 TIIWKHKG--------RDVILKKDVRFIVLSNNYLQIRGI-KKTDEGTYRCEGRILARGE 181

Query: 557 ISE 559
           I+ 
Sbjct: 182 INF 184

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 84.5 bits (209), Expect = 8e-19
 Identities = 30/202 (14%), Positives = 61/202 (30%), Gaps = 37/202 (18%)

Query: 188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYP-NPSYEWFKEDYVQDRLVANLIDPL 246
           R       P+     + +          C   G   +    WF  +          + P 
Sbjct: 1   RVLQVDIVPSQGEISVGE-----SKFFLCQVAGDAKDKDISWFSPN-------GEKLSP- 47

Query: 247 SDKRFTL-----SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK 301
           + +R ++         L I +   ++D G Y C  + + G+    +V +         + 
Sbjct: 48  NQQRISVVWNDDDSSTLTIYNA-NIDDAGIYKCVVTAEDGTQSEATVNV--------KIF 98

Query: 302 RAPEIGNQ------NWGK-AMF-CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGAL 353
           +     N         G+ A+  CD   +       W        +++D R  V  +  L
Sbjct: 99  QKLMFKNAPTPQEFKEGEDAVIVCD-VVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYL 157

Query: 354 YFSALEQIDAGNYSCNVQSKVS 375
               +++ D G Y C  +    
Sbjct: 158 QIRGIKKTDEGTYRCEGRILAR 179

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 84.5 bits (209), Expect = 8e-19
 Identities = 30/202 (14%), Positives = 61/202 (30%), Gaps = 37/202 (18%)

Query: 461 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYP-NPSYEWFKEDYVQDRLVANLIDPL 519
           R       P+     + +          C   G   +    WF  +          + P 
Sbjct: 1   RVLQVDIVPSQGEISVGE-----SKFFLCQVAGDAKDKDISWFSPN-------GEKLSP- 47

Query: 520 SDKRFTL-----SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK 574
           + +R ++         L I +   ++D G Y C  + + G+    +V +         + 
Sbjct: 48  NQQRISVVWNDDDSSTLTIYNA-NIDDAGIYKCVVTAEDGTQSEATVNV--------KIF 98

Query: 575 RAPEIGNQ------NWGK-AMF-CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGAL 626
           +     N         G+ A+  CD   +       W        +++D R  V  +  L
Sbjct: 99  QKLMFKNAPTPQEFKEGEDAVIVCD-VVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYL 157

Query: 627 YFSALEQIDAGNYSCNVQSKVS 648
               +++ D G Y C  +    
Sbjct: 158 QIRGIKKTDEGTYRCEGRILAR 179

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 67.9 bits (166), Expect = 3e-13
 Identities = 20/98 (20%), Positives = 29/98 (29%), Gaps = 15/98 (15%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
             F   PT   F   +     D  + C       P+  W  +           +    D 
Sbjct: 101 LMFKNAPTPQEFKEGE-----DAVIVCDVVSSLPPTIIWKHKG--------RDVILKKDV 147

Query: 250 RFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE 286
           RF  LS   L I    +  D G+Y C+        I+ 
Sbjct: 148 RFIVLSNNYLQIRGI-KKTDEGTYRCEGRILARGEINF 184

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 62.1 bits (151), Expect = 4e-11
 Identities = 26/150 (17%), Positives = 44/150 (29%), Gaps = 17/150 (11%)

Query: 317 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSY----DGALYFSALEQIDAGNYSCNVQS 372
           C    +    +  W            +R+ V +       L        DAG Y C V +
Sbjct: 24  CQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTA 83

Query: 373 KVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYN 432
           +            +K+F    F+    P    + F E    G+   + C       P+  
Sbjct: 84  EDGTQSEA--TVNVKIFQKLMFKNA--PTP--QEFKE----GEDAVIVCDVVSSLPPTII 133

Query: 433 WTRRGSPLPRNA---YFENFNRILTIPNVK 459
           W  +G  +       +    N  L I  +K
Sbjct: 134 WKHKGRDVILKKDVRFIVLSNNYLQIRGIK 163

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 96.2 bits (239), Expect = 2e-22
 Identities = 26/129 (20%), Positives = 46/129 (35%), Gaps = 10/129 (7%)

Query: 686 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-----YFENFNRILTIPNVKVEDQGEYI 740
           A + VR  C A G P PS +W + G               +    L + +V   D+G Y 
Sbjct: 29  AANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYT 88

Query: 741 CRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQ-----ADLTWTCEAFGVPDVTYSW 795
           C   N   ++  + T+ +         L      NQ     +D+ + C+ +        W
Sbjct: 89  CVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQW 148

Query: 796 FRNGELGHQ 804
            ++ E+   
Sbjct: 149 LKHVEVNGS 157

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 84.2 bits (208), Expect = 3e-18
 Identities = 33/193 (17%), Positives = 51/193 (26%), Gaps = 49/193 (25%)

Query: 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-----YFENFNRILTIPNVKM--RGPY- 464
           A + VR  C A G P PS +W + G               +    L + +V    RG Y 
Sbjct: 29  AANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYT 88

Query: 465 ----------------------------FIKQPTDVVFDLSKRSILNDITLSCYAGGYPN 496
                                           P +    L      +D+   C       
Sbjct: 89  CVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLG-----SDVEFHCKVYSDAQ 143

Query: 497 PSYEWFKED------YVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKAS 550
           P  +W K           D      +          +   L + +     D G Y C+A+
Sbjct: 144 PHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANV-SERDGGEYLCRAT 202

Query: 551 NKFGSIISESVQL 563
           N  G    ++  L
Sbjct: 203 NFIGV-AEKAFWL 214

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 81.9 bits (202), Expect = 1e-17
 Identities = 35/197 (17%), Positives = 56/197 (28%), Gaps = 34/197 (17%)

Query: 596 YPGVNYYWARDYFPNFVEE--DKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRN 653
            P  +  W ++      E             +L   ++   D GNY+C V++K    G  
Sbjct: 42  NPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKF---GSI 98

Query: 654 GPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTR 708
              + L V             + P      P       G  V   C  +    P   W +
Sbjct: 99  RQTYTLDVLER--------SPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLK 150

Query: 709 RGSPLPRNAYFENFNRI----------------LTIPNVKVEDQGEYICRASNDRSALES 752
                      +    +                L + NV   D GEY+CRA+N     E 
Sbjct: 151 HVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEK 210

Query: 753 SVTISIQAEPNFTIPLT 769
           +  +S+         L 
Sbjct: 211 AFWLSVHGPRAAEEELV 227

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 72.3 bits (177), Expect = 3e-14
 Identities = 40/219 (18%), Positives = 66/219 (30%), Gaps = 40/219 (18%)

Query: 181 ENPDKIPRG-PYFIK----QPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQ 235
           +    +  G PY+ +        +    +     N +   C A G P PS  W K     
Sbjct: 2   DPDTGVDTGAPYWTRPERMDKKLLAVPAA-----NTVRFRCPAAGNPTPSISWLK----- 51

Query: 236 DRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFI 295
           +         +   +      +L++       DRG+Y C   NKFGS I ++  L    +
Sbjct: 52  NGREFRGEHRIGGIKLRHQQWSLVMESVVP-SDRGNYTCVVENKFGS-IRQTYTLD---V 106

Query: 296 GEFNLKRAPEIG----NQ--NWGK--AMFC----DPP--------TNYPGVNYYWARDYF 335
            E +  R         NQ    G      C    D              G         +
Sbjct: 107 LERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPY 166

Query: 336 PNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 374
              ++      V  D  L  + + + D G Y C   + +
Sbjct: 167 VTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFI 205

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 71.5 bits (175), Expect = 6e-14
 Identities = 39/209 (18%), Positives = 63/209 (30%), Gaps = 39/209 (18%)

Query: 463 PYFIK----QPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDP 518
           PY+ +        +    +     N +   C A G P PS  W K     +         
Sbjct: 12  PYWTRPERMDKKLLAVPAA-----NTVRFRCPAAGNPTPSISWLK-----NGREFRGEHR 61

Query: 519 LSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPE 578
           +   +      +L++       DRG+Y C   NKFGS I ++  L    + E +  R   
Sbjct: 62  IGGIKLRHQQWSLVMESVVP-SDRGNYTCVVENKFGS-IRQTYTLD---VLERSPHRPIL 116

Query: 579 IG----NQ--NWGK--AMFC----DPP--------TNYPGVNYYWARDYFPNFVEEDKRV 618
                 NQ    G      C    D              G         +   ++     
Sbjct: 117 QAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISE 176

Query: 619 FVSYDGALYFSALEQIDAGNYSCNVQSKV 647
            V  D  L  + + + D G Y C   + +
Sbjct: 177 SVEADVRLRLANVSERDGGEYLCRATNFI 205

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 57.6 bits (139), Expect = 2e-09
 Identities = 17/107 (15%), Positives = 29/107 (27%), Gaps = 13/107 (12%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKED------YVQDRLVANLI 243
                 P +    L      +D+   C       P  +W K           D      +
Sbjct: 115 ILQAGLPANQTAVLG-----SDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTV 169

Query: 244 DPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
                     +   L + +     D G Y C+A+N  G    ++  L
Sbjct: 170 LKSWISESVEADVRLRLANV-SERDGGEYLCRATNFIGV-AEKAFWL 214

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 51.9 bits (124), Expect = 2e-07
 Identities = 24/160 (15%), Positives = 40/160 (25%), Gaps = 34/160 (21%)

Query: 323 YPGVNYYWARDYFPNFVEE--DKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRN 380
            P  +  W ++      E             +L   ++   D GNY+C V++K    G  
Sbjct: 42  NPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKF---GSI 98

Query: 381 GPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTR 435
              + L V             + P      P       G  V   C  +    P   W +
Sbjct: 99  RQTYTLDVLER--------SPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLK 150

Query: 436 RGSPLPRNAYFENFNRI----------------LTIPNVK 459
                      +    +                L + NV 
Sbjct: 151 HVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVS 190

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 96.7 bits (240), Expect = 3e-22
 Identities = 43/297 (14%), Positives = 79/297 (26%), Gaps = 59/297 (19%)

Query: 485 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 544
             L+C      +    W +               ++  +       L + +     D G 
Sbjct: 18  FVLTCSG----SAPVVWERMS-------QEPPQEMAKAQDGTFSSVLTLTNL-TGLDTGE 65

Query: 545 YHCKASNKFGSIISESVQL-------AFGFIGEFNLKRAPEIGNQNWGKAMF--CDPPTN 595
           Y C  ++  G    E  +L         GF+                   +   C     
Sbjct: 66  YFCTHNDSRGLETDERKRLYIFVPDPTVGFL---PNDAEELFIFLTEITEITIPCRVTD- 121

Query: 596 YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGP 655
            P +             + D  + V YD    FS +   +  +Y C              
Sbjct: 122 -PQLVVTLHEK------KGDVALPVPYDHQRGFSGIF--EDRSYICKTTIGD-------- 164

Query: 656 FFPLKVFPHSNFQQLKFPNNFPKTFPEAP----KAGDKVRLECVAFGYPVPSYNWTRRGS 711
               +      +   +   +       A     + G+ + L C+  G  V ++ WT    
Sbjct: 165 ----REVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRK 220

Query: 712 PLPRNAYFEN---------FNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 759
              R                  IL IP+ ++ED G Y C  +   +  +    I+I 
Sbjct: 221 ESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINIT 277

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 86.3 bits (213), Expect = 1e-18
 Identities = 26/201 (12%), Positives = 54/201 (26%), Gaps = 13/201 (6%)

Query: 603 WARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF 662
           W R       E  K    ++   L  + L  +D G Y C                 + V 
Sbjct: 30  WERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVP 89

Query: 663 PHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENF 722
                  + F  N  +          ++ + C     P        +   +       + 
Sbjct: 90  D----PTVGFLPNDAEELFIFLTEITEITIPCRVTD-PQLVVTLHEKKGDVALP-VPYDH 143

Query: 723 NRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAE---PNFTIPLTDKHMDNQADL 779
            R  +       +   YIC+ +     ++S      + +    N ++      +    ++
Sbjct: 144 QRGFSGIF----EDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENI 199

Query: 780 TWTCEAFGVPDVTYSWFRNGE 800
           T  C   G   V + W    +
Sbjct: 200 TLMCIVIGNEVVNFEWTYPRK 220

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 85.1 bits (210), Expect = 2e-18
 Identities = 39/252 (15%), Positives = 69/252 (27%), Gaps = 32/252 (12%)

Query: 330 WARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF 389
           W R       E  K    ++   L  + L  +D G Y C                 + V 
Sbjct: 30  WERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVP 89

Query: 390 PHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENF 449
                  + F  N  +          ++ + C     P        +   +       + 
Sbjct: 90  D----PTVGFLPNDAEELFIFLTEITEITIPCRVTD-PQLVVTLHEKKGDVALP-VPYDH 143

Query: 450 NRILTIPNVKMRGPY------------------FIKQPTDVVFDLSKRSIL----NDITL 487
            R  +         Y                  +  Q + +   ++    +     +ITL
Sbjct: 144 QRGFSGIFE--DRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITL 201

Query: 488 SCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHC 547
            C   G    ++EW        RLV  + D L D  + +    L I    ++ED G+Y C
Sbjct: 202 MCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIR-SILHIPSA-ELEDSGTYTC 259

Query: 548 KASNKFGSIISE 559
             +        E
Sbjct: 260 NVTESVNDHQDE 271

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 70.1 bits (171), Expect = 3e-13
 Identities = 42/278 (15%), Positives = 72/278 (25%), Gaps = 61/278 (21%)

Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFEN---FNRILTIPNVKMR--GPY-- 464
                  L C           W R     P+         F+ +LT+ N+     G Y  
Sbjct: 13  NVSSTFVLTCSGSA----PVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFC 68

Query: 465 ------------------FIKQPTDVVFDLSKRSIL------NDITLSCYAGGYPNPSYE 500
                             F+  PT          +        +IT+ C     P     
Sbjct: 69  THNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTD-PQLVVT 127

Query: 501 WFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISES 560
             ++            D      +    G   I       +  SY CK +     + S++
Sbjct: 128 LHEKK----------GDVALPVPYDHQRGFSGIF------EDRSYICKTTIGDREVDSDA 171

Query: 561 VQLAFGFIGEFNLKRAPEIGNQNWGKAMF--CDPPTNYPGVNYYWARD------YFPNFV 612
             +    +   N+           G+ +   C        VN+ W               
Sbjct: 172 YYVYRLQVSSINVSVNAVQTVVRQGENITLMCI-VIGNEVVNFEWTYPRKESGRLVEPVT 230

Query: 613 EEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDT 650
           +    +       L+  + E  D+G Y+CNV   V+D 
Sbjct: 231 DFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDH 268

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 68.2 bits (166), Expect = 1e-12
 Identities = 38/277 (13%), Positives = 70/277 (25%), Gaps = 61/277 (22%)

Query: 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 271
             L+C      +    W +               ++  +       L + +     D G 
Sbjct: 18  FVLTCSG----SAPVVWERMS-------QEPPQEMAKAQDGTFSSVLTLTNL-TGLDTGE 65

Query: 272 YHCKASNKFGSIISESVQL-------AFGFIGEFNLKRAPEIGNQNWGKAMF--CDPPTN 322
           Y C  ++  G    E  +L         GF+                   +   C     
Sbjct: 66  YFCTHNDSRGLETDERKRLYIFVPDPTVGFL---PNDAEELFIFLTEITEITIPCRVTD- 121

Query: 323 YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGP 382
            P +             + D  + V YD    FS +   +  +Y C              
Sbjct: 122 -PQLVVTLHEK------KGDVALPVPYDHQRGFSGIF--EDRSYICKTTIGD-------- 164

Query: 383 FFPLKVFPHSNFQQLKFPNNFPKTFPEAP----KAGDKVRLECVAFGYPVPSYNWTRRGS 438
               +      +   +   +       A     + G+ + L C+  G  V ++ WT    
Sbjct: 165 ----REVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRK 220

Query: 439 PLPRNAYFEN---------FNRILTIPNVKMR--GPY 464
              R                  IL IP+ ++   G Y
Sbjct: 221 ESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTY 257

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 66.6 bits (162), Expect = 5e-12
 Identities = 19/125 (15%), Positives = 36/125 (28%), Gaps = 15/125 (12%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFEN---FNRILTIPNVKVEDQGEYIC 741
                  L C           W R     P+         F+ +LT+ N+   D GEY C
Sbjct: 13  NVSSTFVLTCSGSA----PVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFC 68

Query: 742 RASND---RSALESSVTISIQAEPNFTIPLTDKHMDNQA----DLTWTCEAFGVPDVTYS 794
             ++     +     + I +       +P   + +        ++T  C     P +  +
Sbjct: 69  THNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRV-TDPQLVVT 127

Query: 795 WFRNG 799
                
Sbjct: 128 LHEKK 132

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 58.2 bits (140), Expect = 3e-09
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 2/76 (2%)

Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
           +ITL C   G    ++EW        RLV  + D L D  + +    L I    ++ED G
Sbjct: 198 NITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIR-SILHIPSA-ELEDSG 255

Query: 271 SYHCKASNKFGSIISE 286
           +Y C  +        E
Sbjct: 256 TYTCNVTESVNDHQDE 271

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 98.3 bits (245), Expect = 4e-22
 Identities = 29/128 (22%), Positives = 49/128 (38%), Gaps = 11/128 (8%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFN-RI----------LTIPNVKV 733
               +V L C A G P+P   W R           ++ + RI          L I +VK+
Sbjct: 13  YENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKL 72

Query: 734 EDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTY 793
            D G Y C A++     + S+ + I+  P F    T  +      +  +C+    P  + 
Sbjct: 73  SDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASI 132

Query: 794 SWFRNGEL 801
            W R+  +
Sbjct: 133 HWRRDKLV 140

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 76.4 bits (188), Expect = 7e-15
 Identities = 36/193 (18%), Positives = 53/193 (27%), Gaps = 56/193 (29%)

Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFN-RI----------LTIPNVKM 460
               +V L C A G P+P   W R           ++ + RI          L I +VK+
Sbjct: 13  YENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKL 72

Query: 461 --------------------------RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGY 494
                                       P FI   T            N I +SC     
Sbjct: 73  SDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEG-----NPINISCDVKSN 127

Query: 495 PNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSG----GNLIINDPRQVEDRGSYHCKAS 550
           P  S  W ++          ++   +              L I       D G Y+C A+
Sbjct: 128 PPASIHWRRDK--------LVLPAKNTTNLKTYSTGRKMILEIAPTSD-NDFGRYNCTAT 178

Query: 551 NKFGSIISESVQL 563
           N  G+   +   L
Sbjct: 179 NHIGT-RFQEYIL 190

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 74.8 bits (184), Expect = 2e-14
 Identities = 29/187 (15%), Positives = 52/187 (27%), Gaps = 37/187 (19%)

Query: 614 EDKRVFVSYD---GALYFSALEQIDAGNYSC---NVQSKVSDTGRNGPFFPLKVFPHSNF 667
            D R+ V       +L+   ++  D+G Y C   +       +        L +      
Sbjct: 50  LDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMY------LDI------ 97

Query: 668 QQLKFPNNFPKTFPEAP-----KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF--- 719
                   +   F           G+ + + C     P  S +W R    LP        
Sbjct: 98  -------EYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLK 150

Query: 720 ---ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNF-TIPLTDKHMDN 775
                   IL I      D G Y C A+N          +++   P+        +    
Sbjct: 151 TYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQT 210

Query: 776 QADLTWT 782
            A +++ 
Sbjct: 211 TAKVSFN 217

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 72.1 bits (177), Expect = 2e-13
 Identities = 40/192 (20%), Positives = 66/192 (34%), Gaps = 24/192 (12%)

Query: 193 IKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFT 252
           I Q  +     +       +TL C A G P P   W +     D       D   D R  
Sbjct: 4   IIQLKNETTYENG-----QVTLVCDAEGEPIPEITWKRAV---DGFTFTEGDKSLDGRIE 55

Query: 253 LSG----GNLIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKRAPE 305
           + G     +L I D  ++ D G Y C+A+++ G         ++ A  FI    +  + E
Sbjct: 56  VKGQHGSSSLHIKDV-KLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWE 114

Query: 306 IGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA---LYFSALEQID 362
               N    + C    + P  + +W RD      +    +     G    L  +     D
Sbjct: 115 GNPIN----ISC-DVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDND 169

Query: 363 AGNYSCNVQSKV 374
            G Y+C   + +
Sbjct: 170 FGRYNCTATNHI 181

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 58.3 bits (141), Expect = 5e-09
 Identities = 21/105 (20%), Positives = 31/105 (29%), Gaps = 19/105 (18%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           P FI   T            N I +SC     P  S  W ++          ++   +  
Sbjct: 101 PKFISNQTIYYSWEG-----NPINISCDVKSNPPASIHWRRDK--------LVLPAKNTT 147

Query: 250 RFTLSG----GNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
                       L I       D G Y+C A+N  G+   +   L
Sbjct: 148 NLKTYSTGRKMILEIAPTSD-NDFGRYNCTATNHIGT-RFQEYIL 190

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 49.4 bits (118), Expect = 3e-06
 Identities = 23/143 (16%), Positives = 37/143 (25%), Gaps = 38/143 (26%)

Query: 341 EDKRVFVSYD---GALYFSALEQIDAGNYSC---NVQSKVSDTGRNGPFFPLKVFPHSNF 394
            D R+ V       +L+   ++  D+G Y C   +       +        L +      
Sbjct: 50  LDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMY------LDI------ 97

Query: 395 QQLKFPNNFPKTFPEAP-----KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF--- 446
                   +   F           G+ + + C     P  S +W R    LP        
Sbjct: 98  -------EYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLK 150

Query: 447 ---ENFNRILTIPNVKMR--GPY 464
                   IL I        G Y
Sbjct: 151 TYSTGRKMILEIAPTSDNDFGRY 173

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 94.3 bits (234), Expect = 4e-22
 Identities = 25/131 (19%), Positives = 45/131 (34%), Gaps = 15/131 (11%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENF------------NRILTIPNVK 732
              + ++L C   G+  P   W            + +             +  +T  +V 
Sbjct: 14  PENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVT 73

Query: 733 VEDQGEYICRASN--DRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAF-GVP 789
            +D GEY C  S    ++  E S+ +++   P+         +        TC    G P
Sbjct: 74  RKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSP 133

Query: 790 DVTYSWFRNGE 800
              YSWF++G 
Sbjct: 134 PSEYSWFKDGI 144

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 88.9 bits (220), Expect = 3e-20
 Identities = 37/199 (18%), Positives = 56/199 (28%), Gaps = 22/199 (11%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKED--YVQDRLVANLIDPLS 247
                  +DV    ++      I L+C   G+ +P  EW              + I    
Sbjct: 2   GSVYTAQSDVQVPENE-----SIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPY 56

Query: 248 DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE-SVQLAFGFIGEFNLKRAPEI 306
             R T S   +  +   + +D G Y C  S + G    E S+ L                
Sbjct: 57  ADRVTFSSSGITFSSVTR-KDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSK--PTISVP 113

Query: 307 GNQNWGK-AMF-CDPPTNYPGVNYYWARD---------YFPNFVEEDKRVFVSYDGALYF 355
            +   G  A+  C      P   Y W +D                          G L F
Sbjct: 114 SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIF 173

Query: 356 SALEQIDAGNYSCNVQSKV 374
             +   D+G Y C  Q+  
Sbjct: 174 DPVTAFDSGEYYCQAQNGY 192

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 88.9 bits (220), Expect = 3e-20
 Identities = 37/199 (18%), Positives = 56/199 (28%), Gaps = 22/199 (11%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKED--YVQDRLVANLIDPLS 520
                  +DV    ++      I L+C   G+ +P  EW              + I    
Sbjct: 2   GSVYTAQSDVQVPENE-----SIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPY 56

Query: 521 DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE-SVQLAFGFIGEFNLKRAPEI 579
             R T S   +  +   + +D G Y C  S + G    E S+ L                
Sbjct: 57  ADRVTFSSSGITFSSVTR-KDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSK--PTISVP 113

Query: 580 GNQNWGK-AMF-CDPPTNYPGVNYYWARD---------YFPNFVEEDKRVFVSYDGALYF 628
            +   G  A+  C      P   Y W +D                          G L F
Sbjct: 114 SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIF 173

Query: 629 SALEQIDAGNYSCNVQSKV 647
             +   D+G Y C  Q+  
Sbjct: 174 DPVTAFDSGEYYCQAQNGY 192

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 81.2 bits (200), Expect = 1e-17
 Identities = 31/174 (17%), Positives = 47/174 (27%), Gaps = 32/174 (18%)

Query: 607 YFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSN 666
           Y                  + FS++ + D G Y+C V  +            L V     
Sbjct: 48  YNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIH-LTV----- 101

Query: 667 FQQLKFPNNFPKTFPEAPK-----AGDKVRLEC-VAFGYPVPSYNWTRRGSPLPRNAYFE 720
                     P + P          G++  L C    G P   Y+W + G  +      +
Sbjct: 102 --------LVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKK 153

Query: 721 NFNRI------------LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEP 762
               +            L    V   D GEY C+A N       S    + A  
Sbjct: 154 TRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 81.2 bits (200), Expect = 1e-17
 Identities = 30/188 (15%), Positives = 51/188 (27%), Gaps = 49/188 (26%)

Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENF------------NRILTIPNVK 459
              + ++L C   G+  P   W            + +             +  +T  +V 
Sbjct: 14  PENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVT 73

Query: 460 MR----------------------------GPYFIKQPTDVVFDLSKRSILNDITLSCYA 491
            +                             P            +      N   L+C  
Sbjct: 74  RKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIG-----NRAVLTCSE 128

Query: 492 G-GYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS--GGNLIINDPRQVEDRGSYHCK 548
             G P   Y WFK+        A       +  FT+    G+LI +      D G Y+C+
Sbjct: 129 HDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPV-TAFDSGEYYCQ 187

Query: 549 ASNKFGSI 556
           A N +G+ 
Sbjct: 188 AQNGYGTA 195

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 59.6 bits (144), Expect = 3e-10
 Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 9/97 (9%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAG-GYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
           P            +      N   L+C    G P   Y WFK+        A       +
Sbjct: 105 PSKPTISVPSSVTIG-----NRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMN 159

Query: 249 KRFTLS--GGNLIINDPRQVEDRGSYHCKASNKFGSI 283
             FT+    G+LI +      D G Y+C+A N +G+ 
Sbjct: 160 SSFTIDPKSGDLIFDPV-TAFDSGEYYCQAQNGYGTA 195

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 94.1 bits (234), Expect = 5e-22
 Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 13/127 (10%)

Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKV-EDQGEYI 740
           G      C A G P P   W ++G  +    +      +    +L I  ++   D+  Y 
Sbjct: 21  GGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYE 80

Query: 741 CRASNDRSALESSVTISIQAE-------PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTY 793
           C ASN+   +  S  +++  E       P   +    K ++     T  C A G PD   
Sbjct: 81  CVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEI 140

Query: 794 SWFRNGE 800
           +WF++  
Sbjct: 141 TWFKDFL 147

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 91.0 bits (226), Expect = 5e-21
 Identities = 35/189 (18%), Positives = 58/189 (30%), Gaps = 48/189 (25%)

Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKMR------- 461
           G      C A G P P   W ++G  +    +      +    +L I  ++         
Sbjct: 21  GGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYE 80

Query: 462 ---------------------------GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGY 494
                                       P     P   V + ++       T+ C A G 
Sbjct: 81  CVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTR-----TATMLCAASGN 135

Query: 495 PNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFG 554
           P+P   WFK+      +  +  +    +  + S G L I    +  D+G Y C A+N  G
Sbjct: 136 PDPEITWFKDF---LPVDTSNNNGRIKQLRSESIGALQIEQSEE-SDQGKYECVATNSAG 191

Query: 555 SIISESVQL 563
           +  S    L
Sbjct: 192 TRYSAPANL 200

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 81.0 bits (200), Expect = 2e-17
 Identities = 30/170 (17%), Positives = 53/170 (31%), Gaps = 26/170 (15%)

Query: 613 EEDKRVFVSYDGALYFSALEQI----DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQ 668
            +   V    DG+     ++ +    D   Y C   + V   G       L V       
Sbjct: 49  NQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNV---GEISVSTRLTVLRED--- 102

Query: 669 QLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFN 723
             + P  FP      P+           + C A G P P   W +   P+  +       
Sbjct: 103 --QIPRGFPT-IDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIK 159

Query: 724 RI-------LTIPNVKVEDQGEYICRASNDR-SALESSVTISIQAEPNFT 765
           ++       L I   +  DQG+Y C A+N   +   +   + ++   +  
Sbjct: 160 QLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKHHH 209

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 75.2 bits (185), Expect = 2e-15
 Identities = 48/212 (22%), Positives = 64/212 (30%), Gaps = 55/212 (25%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           P F + P D              +  C A G P P   W K+              +S++
Sbjct: 7   PRFTRTPVDQTGVSGG-----VASFICQATGDPRPKIVWNKKG-----------KKVSNQ 50

Query: 250 RFTL------SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRA 303
           RF +      SG  L I   R   D   Y C ASN  G  IS S +L         + R 
Sbjct: 51  RFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGE-ISVSTRL--------TVLRE 101

Query: 304 PEIGNQNWGKAMFCDPPTN-----------------YPGVNYYWARDYFP----NFVEED 342
            +I     G       P                    P     W +D+ P    N     
Sbjct: 102 DQIPR---GFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRI 158

Query: 343 KRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 374
           K++     GAL     E+ D G Y C   +  
Sbjct: 159 KQLRSESIGALQIEQSEESDQGKYECVATNSA 190

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 75.2 bits (185), Expect = 2e-15
 Identities = 48/212 (22%), Positives = 64/212 (30%), Gaps = 55/212 (25%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
           P F + P D              +  C A G P P   W K+              +S++
Sbjct: 7   PRFTRTPVDQTGVSGG-----VASFICQATGDPRPKIVWNKKG-----------KKVSNQ 50

Query: 523 RFTL------SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRA 576
           RF +      SG  L I   R   D   Y C ASN  G  IS S +L         + R 
Sbjct: 51  RFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGE-ISVSTRL--------TVLRE 101

Query: 577 PEIGNQNWGKAMFCDPPTN-----------------YPGVNYYWARDYFP----NFVEED 615
            +I     G       P                    P     W +D+ P    N     
Sbjct: 102 DQIPR---GFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRI 158

Query: 616 KRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 647
           K++     GAL     E+ D G Y C   +  
Sbjct: 159 KQLRSESIGALQIEQSEESDQGKYECVATNSA 190

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 72.2 bits (177), Expect = 2e-14
 Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 9/111 (8%)

Query: 180 IENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLV 239
           +         P     P   V + ++       T+ C A G P+P   WFK+      + 
Sbjct: 99  LREDQIPRGFPTIDMGPQLKVVERTR-----TATMLCAASGNPDPEITWFKDF---LPVD 150

Query: 240 ANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
            +  +    +  + S G L I    +  D+G Y C A+N  G+  S    L
Sbjct: 151 TSNNNGRIKQLRSESIGALQIEQSEE-SDQGKYECVATNSAGTRYSAPANL 200

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 51.7 bits (124), Expect = 1e-07
 Identities = 23/136 (16%), Positives = 38/136 (27%), Gaps = 25/136 (18%)

Query: 340 EEDKRVFVSYDGALYFSALEQI----DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQ 395
            +   V    DG+     ++ +    D   Y C   + V   G       L V       
Sbjct: 49  NQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNV---GEISVSTRLTVLRED--- 102

Query: 396 QLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFN 450
             + P  FP      P+           + C A G P P   W +   P+  +       
Sbjct: 103 --QIPRGFPT-IDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIK 159

Query: 451 RI-------LTIPNVK 459
           ++       L I   +
Sbjct: 160 QLRSESIGALQIEQSE 175

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 89.3 bits (222), Expect = 8e-22
 Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 686 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASN 745
            G  + L+CVA G P+P Y W +   PL          ++  +P V +E QG Y C   N
Sbjct: 17  PGSTLVLQCVAVGSPIPHYQWFKNELPLTHET-----KKLYMVPYVDLEHQGTYWCHVYN 71

Query: 746 DRSALESSVTISIQAEPN 763
           DR + +S     I  E N
Sbjct: 72  DRDSQDSKKVEIIIDELN 89

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 70.1 bits (172), Expect = 5e-15
 Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 21/109 (19%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
                +PT            + + L C A G P P Y+WFK +            PL+ +
Sbjct: 4   LQICVEPTSQKLMPG-----STLVLQCVAVGSPIPHYQWFKNE-----------LPLTHE 47

Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEF 298
               +    ++     +E +G+Y C   N   S  S+ V++    +   
Sbjct: 48  ----TKKLYMVPYV-DLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNL 91

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 70.1 bits (172), Expect = 5e-15
 Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 21/109 (19%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
                +PT            + + L C A G P P Y+WFK +            PL+ +
Sbjct: 4   LQICVEPTSQKLMPG-----STLVLQCVAVGSPIPHYQWFKNE-----------LPLTHE 47

Query: 523 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEF 571
               +    ++     +E +G+Y C   N   S  S+ V++    +   
Sbjct: 48  ----TKKLYMVPYV-DLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNL 91

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 55.8 bits (135), Expect = 6e-10
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 7/54 (12%)

Query: 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMR--GPY 464
            G  + L+CVA G P+P Y W +   PL          ++  +P V +   G Y
Sbjct: 17  PGSTLVLQCVAVGSPIPHYQWFKNELPLTHET-----KKLYMVPYVDLEHQGTY 65

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 44.2 bits (105), Expect = 6e-06
 Identities = 10/41 (24%), Positives = 17/41 (41%)

Query: 760 AEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
           ++    +  T + +   + L   C A G P   Y WF+N  
Sbjct: 2   SKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNEL 42

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 92.9 bits (230), Expect = 1e-21
 Identities = 29/131 (22%), Positives = 48/131 (36%), Gaps = 7/131 (5%)

Query: 678 KTFPEAP---KAGDKVRLECVAFGYPVPSYNWTR-RGSPLPRNAYFENFNRILTIPNVKV 733
           +T PE+    + GD V L C   G   P ++W     SPL      E     LT+  V  
Sbjct: 4   ETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSF 63

Query: 734 EDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGV---PD 790
            ++  Y+C A+ +   LE  + + I + P          ++    +T  C    V     
Sbjct: 64  GNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDR 123

Query: 791 VTYSWFRNGEL 801
           +     +   L
Sbjct: 124 LEIDLLKGDHL 134

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 64.4 bits (156), Expect = 7e-12
 Identities = 37/187 (19%), Positives = 54/187 (28%), Gaps = 33/187 (17%)

Query: 405 KTFPEAP---KAGDKVRLECVAFGYPVPSYNWTR-RGSPLPRNAYFENFNRILTIPNVKM 460
           +T PE+    + GD V L C   G   P ++W     SPL      E     LT+  V  
Sbjct: 4   ETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSF 63

Query: 461 R--GPYF-----------------IKQPTDVVFDLSKRSIL--NDITLSCYA-GGYPNP- 497
                Y                  I              +     IT+ C     YP   
Sbjct: 64  GNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDR 123

Query: 498 -SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG-SYHCKASNKFGS 555
              +  K     D L+ +        R +L   +L +     +ED G    C+A      
Sbjct: 124 LEIDLLKG----DHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE 179

Query: 556 IISESVQ 562
           + S    
Sbjct: 180 MDSVPTV 186

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 60.6 bits (146), Expect = 1e-10
 Identities = 16/161 (9%), Positives = 47/161 (29%), Gaps = 29/161 (18%)

Query: 623 DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPE 682
              L  + +   +  +Y C   +   ++ +      ++++      ++            
Sbjct: 53  TSTLTMNPVSFGNEHSYLC---TATCESRKLEKGIQVEIYSFPKDPEIHLS--------G 101

Query: 683 APKAGDKVRLECVAFG-YPVP--SYNWTRRGSPLPRNAY--------FENFNRILTIPNV 731
             +AG  + ++C     YP      +  +    +    +         E  +  +T   V
Sbjct: 102 PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPV 161

Query: 732 KVEDQGEYICRASND-------RSALESSVTISIQAEPNFT 765
             +     +CRA           +  ++   + +   P  T
Sbjct: 162 IEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPKNT 202

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 54.8 bits (131), Expect = 1e-08
 Identities = 25/179 (13%), Positives = 57/179 (31%), Gaps = 26/179 (14%)

Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
            ++L+C   G  +P + W             +  PL+ K       + +  +P    +  
Sbjct: 18  SVSLTCSTTGCESPFFSWRT----------QIDSPLNGKVTNEGTTSTLTMNPVSFGNEH 67

Query: 271 SYHCKASNKFGSIISESVQL---AFGFIGEFNLKRAPEIGNQNWGKAMF-CDPPTNYP-- 324
           SY C A+ +    + + +Q+   +F    E +L    E G          C     YP  
Sbjct: 68  SYLCTATCESRK-LEKGIQVEIYSFPKDPEIHLSGPLEAGKP----ITVKCSVADVYPFD 122

Query: 325 GVNYYWARD-----YFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTG 378
            +     +            + D++   +    + F+ + +       C  +  + +  
Sbjct: 123 RLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMD 181

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 54.8 bits (131), Expect = 1e-08
 Identities = 25/179 (13%), Positives = 57/179 (31%), Gaps = 26/179 (14%)

Query: 484 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 543
            ++L+C   G  +P + W             +  PL+ K       + +  +P    +  
Sbjct: 18  SVSLTCSTTGCESPFFSWRT----------QIDSPLNGKVTNEGTTSTLTMNPVSFGNEH 67

Query: 544 SYHCKASNKFGSIISESVQL---AFGFIGEFNLKRAPEIGNQNWGKAMF-CDPPTNYP-- 597
           SY C A+ +   +  + +Q+   +F    E +L    E G          C     YP  
Sbjct: 68  SYLCTATCESRKL-EKGIQVEIYSFPKDPEIHLSGPLEAGKP----ITVKCSVADVYPFD 122

Query: 598 GVNYYWARD-----YFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTG 651
            +     +            + D++   +    + F+ + +       C  +  + +  
Sbjct: 123 RLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMD 181

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 89.5 bits (222), Expect = 2e-20
 Identities = 32/194 (16%), Positives = 56/194 (28%), Gaps = 20/194 (10%)

Query: 585 GKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDG---ALYFSALEQIDAGNYSC 641
           G  ++         +   W+ +     +    RV     G    L  +     D G Y  
Sbjct: 19  GIQLYSFVTYYVEDLKVNWSHNGSA--IRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVM 76

Query: 642 ---NVQSKVSDTGR-NGPFFPLKVFPHSNFQQLKFPN-NFPKTFPEAPK-----AGDKVR 691
              + ++    T   +G  +          +Q      N  +     P       G  + 
Sbjct: 77  ELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALN 136

Query: 692 LECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQGEYICRASND 746
           L C  +G P P  +W +    L +  +             TI  V   D G+Y     N 
Sbjct: 137 LTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNK 196

Query: 747 RSALESSVTISIQA 760
             +  S  T+S+  
Sbjct: 197 YGSETSDFTVSVFI 210

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 75.7 bits (186), Expect = 1e-15
 Identities = 24/141 (17%), Positives = 44/141 (31%), Gaps = 26/141 (18%)

Query: 686 AGDKVRLEC-VAFGYPVPSYNWTRRGSPLPRNA----YFENFNRILTIPNVKVEDQGEYI 740
             + ++L   V +       NW+  GS +  +             L I      D+G+Y+
Sbjct: 16  TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYV 75

Query: 741 CRASNDRSALESSVTISIQAEPNFTI----------------PLTDKHMDNQA-----DL 779
               + ++  + +V +S QA                       +     D         L
Sbjct: 76  MELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKAL 135

Query: 780 TWTCEAFGVPDVTYSWFRNGE 800
             TC  +G P    SW +N +
Sbjct: 136 NLTCNVWGDPPPEVSWLKNEK 156

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 63.7 bits (155), Expect = 2e-11
 Identities = 31/202 (15%), Positives = 44/202 (21%), Gaps = 69/202 (34%)

Query: 413 AGDKVRLEC-VAFGYPVPSYNWTRRGSPLPRNA----YFENFNRILTIPNV--------- 458
             + ++L   V +       NW+  GS +  +             L I            
Sbjct: 16  TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYV 75

Query: 459 --------------------------------------KMRGPYFIKQPTDVVFDLSKRS 480
                                                 K R       P  V     K  
Sbjct: 76  MELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGK-- 133

Query: 481 ILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGN---LIINDPR 537
               + L+C   G P P   W K +          +            G      IN   
Sbjct: 134 ---ALNLTCNVWGDPPPEVSWLKNEKA--------LAQTDHCNLKFEAGRTAYFTINGVS 182

Query: 538 QVEDRGSYHCKASNKFGSIISE 559
              D G Y     NK+GS  S+
Sbjct: 183 T-ADSGKYGLVVKNKYGSETSD 203

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 63.0 bits (153), Expect = 3e-11
 Identities = 27/173 (15%), Positives = 47/173 (27%), Gaps = 22/173 (12%)

Query: 312 GKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDG---ALYFSALEQIDAGNYSC 368
           G  ++         +   W+ +     +    RV     G    L  +     D G Y  
Sbjct: 19  GIQLYSFVTYYVEDLKVNWSHNGSA--IRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVM 76

Query: 369 ---NVQSKVSDTGR-NGPFFPLKVFPHSNFQQLKFPN-NFPKTFPEAPK-----AGDKVR 418
              + ++    T   +G  +          +Q      N  +     P       G  + 
Sbjct: 77  ELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALN 136

Query: 419 LECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKM--RGPY 464
           L C  +G P P  +W +    L +  +             TI  V     G Y
Sbjct: 137 LTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKY 189

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 58.0 bits (140), Expect = 1e-09
 Identities = 22/103 (21%), Positives = 28/103 (27%), Gaps = 17/103 (16%)

Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 246
            R       P  V     K      + L+C   G P P   W K +          +   
Sbjct: 115 NRARVLGGLPDVVTIQEGK-----ALNLTCNVWGDPPPEVSWLKNEKA--------LAQT 161

Query: 247 SDKRFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISE 286
                    G      IN      D G Y     NK+GS  S+
Sbjct: 162 DHCNLKFEAGRTAYFTINGVST-ADSGKYGLVVKNKYGSETSD 203

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 56.4 bits (136), Expect = 4e-09
 Identities = 30/213 (14%), Positives = 58/213 (27%), Gaps = 43/213 (20%)

Query: 189 GPYFIKQPTDVVFDLSKRSILNDITLSCY-AGGYPNPSYEWFKEDYVQDRLVANLIDPLS 247
           G       TD+      +S    I L  +      +    W            + I    
Sbjct: 1   GSSIALSATDLKI----QSTAEGIQLYSFVTYYVEDLKVNWSHNG--------SAIRYSD 48

Query: 248 DKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKR 302
             +  ++G    L IN+P    D+G Y  +  +           S Q       EF   +
Sbjct: 49  RVKTGVTGEQIWLQINEP-TPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLK 107

Query: 303 APEIGNQNWGKAMFCDPPTN-----------------YPGVNYYWARDYFPNFVEEDKRV 345
              I  +N  + +    P                    P     W ++     + +    
Sbjct: 108 QAAIAEKNRAR-VLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKA--LAQTDHC 164

Query: 346 FVSYD----GALYFSALEQIDAGNYSCNVQSKV 374
            + ++         + +   D+G Y   V++K 
Sbjct: 165 NLKFEAGRTAYFTINGVSTADSGKYGLVVKNKY 197

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 56.4 bits (136), Expect = 4e-09
 Identities = 30/213 (14%), Positives = 58/213 (27%), Gaps = 43/213 (20%)

Query: 462 GPYFIKQPTDVVFDLSKRSILNDITLSCY-AGGYPNPSYEWFKEDYVQDRLVANLIDPLS 520
           G       TD+      +S    I L  +      +    W            + I    
Sbjct: 1   GSSIALSATDLKI----QSTAEGIQLYSFVTYYVEDLKVNWSHNG--------SAIRYSD 48

Query: 521 DKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKR 575
             +  ++G    L IN+P    D+G Y  +  +           S Q       EF   +
Sbjct: 49  RVKTGVTGEQIWLQINEP-TPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLK 107

Query: 576 APEIGNQNWGKAMFCDPPTN-----------------YPGVNYYWARDYFPNFVEEDKRV 618
              I  +N  + +    P                    P     W ++     + +    
Sbjct: 108 QAAIAEKNRAR-VLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKA--LAQTDHC 164

Query: 619 FVSYD----GALYFSALEQIDAGNYSCNVQSKV 647
            + ++         + +   D+G Y   V++K 
Sbjct: 165 NLKFEAGRTAYFTINGVSTADSGKYGLVVKNKY 197

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 89.2 bits (221), Expect = 2e-20
 Identities = 26/145 (17%), Positives = 42/145 (28%), Gaps = 21/145 (14%)

Query: 677 PKTFPEAPK-----AGDKVRLECVAF-GYPVPSYNWTRRGSPLPRNA------------- 717
              F   P       G    L C        P  +W R G  L                 
Sbjct: 2   ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQ 61

Query: 718 YFENFNRILTIPNVKVEDQGEYICRASNDRSALES-SVTISIQAEPNFTIPLTDKHMDNQ 776
                   L I ++++ D G+Y C          S    + ++  P F     D+ +   
Sbjct: 62  DDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAAN 121

Query: 777 ADLTWTCEAFGVPD-VTYSWFRNGE 800
                +C+A G P+ V   W ++  
Sbjct: 122 TPFNLSCQAQGPPEPVDLLWLQDAV 146

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 80.3 bits (198), Expect = 2e-17
 Identities = 34/207 (16%), Positives = 52/207 (25%), Gaps = 66/207 (31%)

Query: 404 PKTFPEAPK-----AGDKVRLECVAF-GYPVPSYNWTRRGSPLPRNA------------- 444
              F   P       G    L C        P  +W R G  L                 
Sbjct: 2   ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQ 61

Query: 445 YFENFNRILTIPNVK-------------MRG--------------PYFIKQPTDVVFDLS 477
                   L I +++                              PYF+++P D     +
Sbjct: 62  DDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAAN 121

Query: 478 KRSILNDITLSCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDP 536
                    LSC A G P P    W ++             PL+         +L +   
Sbjct: 122 -----TPFNLSCQAQGPPEPVDLLWLQDA-----------VPLATAPGHGPQRSLHVP-- 163

Query: 537 RQVEDRGSYHCKASNKFGSIISESVQL 563
             +    S+ C+A N  G   S +  +
Sbjct: 164 -GLNKTSSFSCEAHNAKGVTTSRTATI 189

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 78.8 bits (194), Expect = 8e-17
 Identities = 38/187 (20%), Positives = 59/187 (31%), Gaps = 33/187 (17%)

Query: 588 MFCDPPTNYPGVNYYWARDYFP----------NFVEEDKRVFVSYDGALYFSALEQIDAG 637
           + C           +W RD               + ED++        L  ++L+  D G
Sbjct: 22  LRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG 81

Query: 638 NYSC----NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLE 693
            Y C      Q+ VS  G       + +     F  L+ P +          A     L 
Sbjct: 82  QYQCLVFLGHQTFVSQPGY------VGLEGLPYF--LEEPED------RTVAANTPFNLS 127

Query: 694 CVAFGYPVP-SYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALES 752
           C A G P P    W +   PL          R L +P +       + C A N +    S
Sbjct: 128 CQAQGPPEPVDLLWLQDAVPLATAPGHGP-QRSLHVPGL--NKTSSFSCEAHNAKGVTTS 184

Query: 753 -SVTISI 758
            + TI++
Sbjct: 185 RTATITV 191

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 72.6 bits (178), Expect = 9e-15
 Identities = 29/195 (14%), Positives = 53/195 (27%), Gaps = 28/195 (14%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSC-YAGGYPNPSYEWFKED---YVQDRLVANLIDP 245
             F+  P ++             TL C        P   W ++     + D     +   
Sbjct: 3   SPFVGNPGNITGARGL-----TGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLG 57

Query: 246 LSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPE 305
             ++   +    L I   +   D G Y C       + +S+   +    +  F     PE
Sbjct: 58  EDEQDDWIVVSQLRITSLQL-SDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYF--LEEPE 114

Query: 306 IGNQNWGK-AMF-C----DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALE 359
                        C     P    P V+  W +D  P  +            +L+   L 
Sbjct: 115 DRTVAANTPFNLSCQAQGPPE---P-VDLLWLQDAVP--LATAPGHGP--QRSLHVPGLN 166

Query: 360 QIDAGNYSCNVQSKV 374
                ++SC   +  
Sbjct: 167 --KTSSFSCEAHNAK 179

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 72.6 bits (178), Expect = 9e-15
 Identities = 29/195 (14%), Positives = 53/195 (27%), Gaps = 28/195 (14%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSC-YAGGYPNPSYEWFKED---YVQDRLVANLIDP 518
             F+  P ++             TL C        P   W ++     + D     +   
Sbjct: 3   SPFVGNPGNITGARGL-----TGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLG 57

Query: 519 LSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPE 578
             ++   +    L I   +   D G Y C       + +S+   +    +  F     PE
Sbjct: 58  EDEQDDWIVVSQLRITSLQL-SDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYF--LEEPE 114

Query: 579 IGNQNWGK-AMF-C----DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALE 632
                        C     P    P V+  W +D  P  +            +L+   L 
Sbjct: 115 DRTVAANTPFNLSCQAQGPPE---P-VDLLWLQDAVP--LATAPGHGP--QRSLHVPGLN 166

Query: 633 QIDAGNYSCNVQSKV 647
                ++SC   +  
Sbjct: 167 --KTSSFSCEAHNAK 179

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 68.8 bits (168), Expect = 2e-13
 Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 20/102 (19%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPLSD 248
           PYF+++P D     +         LSC A G P P    W ++             PL+ 
Sbjct: 107 PYFLEEPEDRTVAAN-----TPFNLSCQAQGPPEPVDLLWLQDA-----------VPLAT 150

Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
                   +L +     +    S+ C+A N  G   S +  +
Sbjct: 151 APGHGPQRSLHVP---GLNKTSSFSCEAHNAKGVTTSRTATI 189

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 61.5 bits (149), Expect = 6e-11
 Identities = 32/165 (19%), Positives = 49/165 (29%), Gaps = 30/165 (18%)

Query: 315 MFCDPPTNYPGVNYYWARDYFP----------NFVEEDKRVFVSYDGALYFSALEQIDAG 364
           + C           +W RD               + ED++        L  ++L+  D G
Sbjct: 22  LRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG 81

Query: 365 NYSC----NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLE 420
            Y C      Q+ VS  G       + +     F  L+ P +          A     L 
Sbjct: 82  QYQCLVFLGHQTFVSQPGY------VGLEGLPYF--LEEPED------RTVAANTPFNLS 127

Query: 421 CVAFGYPVP-SYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPY 464
           C A G P P    W +   PL          R L +P +     +
Sbjct: 128 CQAQGPPEPVDLLWLQDAVPLATAPGHGP-QRSLHVPGLNKTSSF 171

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 95.1 bits (235), Expect = 2e-20
 Identities = 53/362 (14%), Positives = 97/362 (26%), Gaps = 55/362 (15%)

Query: 485 ITLSC-YAGGYPNPSYE--WFKEDYVQDRLV---------------ANLIDPLSDKRFTL 526
           ++++C Y     N      W ++      +                ANL +   +  F +
Sbjct: 18  VSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVV 77

Query: 527 SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGK 586
           +   L        +D G Y C        + S  V L                 +     
Sbjct: 78  NIAQL------SQDDSGRYKCGLGINSRGL-SFDVSLEVSQGPGLLNDTKVYTVDLGRTV 130

Query: 587 AMFCDPPTNYPGVNYYWARD---------YFPNFVEEDK----RVFVSYDGALYF----S 629
            + C   T          +              +V  +     R+ +   G L F    +
Sbjct: 131 TINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVIN 190

Query: 630 ALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDK 689
            L   DAG Y C      +   +N     LK  P   ++ L+    F       P+  + 
Sbjct: 191 QLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALG--PEVANV 248

Query: 690 VRLECVAFGYPVPSYNWTRRGSPLPRNA-------YFENFNRILTIPNVKVEDQGEYICR 742
            +  C               G   P            ++ +  + I  ++ ED G Y+C 
Sbjct: 249 AKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCG 308

Query: 743 ASNDRSALESSVTIS----IQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRN 798
           A +D    E S   +    +  E       T       + +   C        +  ++  
Sbjct: 309 AHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCL 368

Query: 799 GE 800
            E
Sbjct: 369 WE 370

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 88.9 bits (219), Expect = 2e-18
 Identities = 67/549 (12%), Positives = 115/549 (20%), Gaps = 115/549 (20%)

Query: 318 DPPTNYPGVNYYWARDYFPN----FVEEDKRVFVSYDG-------------ALYFSALEQ 360
            P +       YW R          +  +  V   Y G              +  + L Q
Sbjct: 25  PPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQ 84

Query: 361 IDAGNYSCNVQSKVSDTGRN---GPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKV 417
            D+G Y C +         +          +   +    +          P   +   K 
Sbjct: 85  DDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKR 144

Query: 418 RLECVAFGYPVPSYNWTRRGSPLPRNAYF-------ENFNRILTIPNVKMR--GPY---- 464
           +      G        +                         + I  +++   G Y    
Sbjct: 145 KSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQA 204

Query: 465 ----------FIKQPTDVVFDLSKRSILNDITLSCY--------------AGGYPNPSYE 500
                        Q      +L    +   +T  C                    N    
Sbjct: 205 GDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVV 264

Query: 501 WFKEDYVQDRLVANLIDPLSDKRFTLSGGN------LIINDPRQVEDRGSYHCKASNKFG 554
                            P  + R  L+  +      ++I   R+ ED G Y C A +   
Sbjct: 265 VNTLGKRA---------PAFEGRILLNPQDKDGSFSVVITGLRK-EDAGRYLCGAHSDGQ 314

Query: 555 SIISESVQLAFGFIGE--FNLKRAPEIGNQNWGKAMF-CDPPTNYPGVNYYWARD----- 606
                 +Q    F+ E     +    +           C           YW        
Sbjct: 315 LQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQN 374

Query: 607 -YFPNFVEEDKRVFVSYDG-------------ALYFSALEQIDAGNYSCNVQSKVSDTGR 652
              P  V+ +  V   Y+G              +  + L   DAG Y C           
Sbjct: 375 GRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTN-------- 426

Query: 653 NGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSP 712
               +   V       +         T              C    Y      W   G  
Sbjct: 427 GDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQ 486

Query: 713 LPRNAYFENFNRI-----------LTIPNVKVEDQGEYICRASNDRSALES-SVTISIQA 760
              +                    LT+  V   D+G Y C         E+ +V ++++ 
Sbjct: 487 ALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEE 546

Query: 761 EPNFTIPLT 769
                    
Sbjct: 547 RKAAGSRDV 555

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 82.7 bits (203), Expect = 2e-16
 Identities = 65/532 (12%), Positives = 126/532 (23%), Gaps = 123/532 (23%)

Query: 160 SIQKLHYLLNDDRTYQYGMDIENPD-------KIPRGPYFIKQPTDVVFDLSKRSILNDI 212
            +       +D   Y+ G+ I +         ++ +GP  +        DL +      +
Sbjct: 76  VVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGR-----TV 130

Query: 213 TLSCY--AGGYPNPSYEWFKEDYVQDRLV--ANLIDPLSDKRFTLS-------GGNLIIN 261
           T++C             + +       ++  +  ++P    R  L          +++IN
Sbjct: 131 TINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVIN 190

Query: 262 DPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPT 321
             R   D G Y C+A +   S    +         E          +        C    
Sbjct: 191 QLRL-SDAGQYLCQAGDDSNSNKKNADLQVLKPEPE------LVYEDLRGSVTFHCALGP 243

Query: 322 NYPGVNYYWAR---DYFPNFV---------EEDKRVFVSYDGA-----LYFSALEQIDAG 364
               V  +  R       + V           + R+ ++         +  + L + DAG
Sbjct: 244 EVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAG 303

Query: 365 NYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF 424
            Y C   S         P    ++F +      + P            AG  V + C   
Sbjct: 304 RYLCGAHSDGQL-QEGSPIQAWQLFVNEESTIPRSPTVVKGV------AGSSVAVLCPYN 356

Query: 425 GYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILND 484
                S  +                                                   
Sbjct: 357 RKESKSIKYWCLWEGAQNG----------------------------------------- 375

Query: 485 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 544
               C          +   E  +       L++   +  FT+    L         D G 
Sbjct: 376 ---RCPLLVDSEGWVKAQYEGRLS------LLEEPGNGTFTVILNQL------TSRDAGF 420

Query: 545 YHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWA 604
           Y C  +       +  +++  G                     + C  P  +     YW 
Sbjct: 421 YWCLTNGDTLWRTTVEIKIIEGEPNLK--VPGNVTAVLGETLKVPCHFPCKFSSYEKYWC 478

Query: 605 RDYFPNF-------VEEDKRVFVSYDGALYFS----ALEQIDAGNYSCNVQS 645
           +                 K      + +   S     + + D G Y C V+ 
Sbjct: 479 KWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQ 530

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 62.7 bits (151), Expect = 3e-10
 Identities = 31/241 (12%), Positives = 63/241 (26%), Gaps = 38/241 (15%)

Query: 155 FICEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITL 214
           ++C A         +D +  +          +       + PT V     K    + + +
Sbjct: 305 YLCGAH--------SDGQLQEGSPIQAWQLFVNEESTIPRSPTVV-----KGVAGSSVAV 351

Query: 215 SCYAGGYPNPSYE-WFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPR--------- 264
            C      + S + W   +  Q+     L+D     +    G   ++ +P          
Sbjct: 352 LCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILN 411

Query: 265 --QVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTN 322
                D G Y C  +       +  +++  G                     + C  P  
Sbjct: 412 QLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLK--VPGNVTAVLGETLKVPCHFPCK 469

Query: 323 YPGVNYYWARDYFPNF-------VEEDKRVFVSYDGALYFS----ALEQIDAGNYSCNVQ 371
           +     YW +                 K      + +   S     + + D G Y C V+
Sbjct: 470 FSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVK 529

Query: 372 S 372
            
Sbjct: 530 Q 530

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 56.2 bits (134), Expect = 3e-08
 Identities = 19/146 (13%), Positives = 38/146 (26%), Gaps = 25/146 (17%)

Query: 687 GDKVRLEC---VAFGYPVPSYNWTRRGSPLPRNAYFENFNRI------------------ 725
           G+ V + C              W R+G+         +   +                  
Sbjct: 15  GNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGT 74

Query: 726 --LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTC 783
             + I  +  +D G Y C    +   L   V++ +   P          +D    +T  C
Sbjct: 75  FVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINC 134

Query: 784 --EAFGVPDVTYSWFRNGELGHQMTD 807
             +          + + G     + D
Sbjct: 135 PFKTENAQKRKSLYKQIGLYPVLVID 160

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 89.0 bits (220), Expect = 3e-20
 Identities = 32/188 (17%), Positives = 63/188 (33%), Gaps = 21/188 (11%)

Query: 584 WGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRV------FVSYDGALYFSALEQIDAG 637
           W  +   +   +   + Y   + Y   + +   RV        S D ++  + L+  D G
Sbjct: 38  WLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIG 97

Query: 638 NYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC-VA 696
            Y C V+       +    F L V        L  P+        + + G+  +L+C   
Sbjct: 98  TYQCKVKKAPGVANKK---FLLTV--------LVKPSGTRCFVDGSEEIGNDFKLKCEPK 146

Query: 697 FGYPVPSYNWTRRGSPL--PRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSV 754
            G     + W +       P     E  + ++++ N   E  G Y C   N   + +  +
Sbjct: 147 EGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCML 206

Query: 755 TISIQAEP 762
            + +   P
Sbjct: 207 RLDVV-PP 213

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 74.0 bits (181), Expect = 5e-15
 Identities = 25/158 (15%), Positives = 44/158 (27%), Gaps = 36/158 (22%)

Query: 679 TFPEAP---KAGDKVRLECVAFGYPVPSYN----WTRRGSPLPR---------------N 716
           T PE       G+   L C     P         W    S                   N
Sbjct: 4   TTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDN 63

Query: 717 AYFENFNRI-------------LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPN 763
            Y +   R+             + + N+++ D G Y C+             +++  +P+
Sbjct: 64  YYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPS 123

Query: 764 FTIPLTDKHMDNQADLTWTCEA-FGVPDVTYSWFRNGE 800
            T    D   +   D    CE   G   + + W +  +
Sbjct: 124 GTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSD 161

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 64.3 bits (156), Expect = 1e-11
 Identities = 28/188 (14%), Positives = 51/188 (27%), Gaps = 29/188 (15%)

Query: 211 DITLSCYAGGYPNPSY----EWFKED-----------YVQDRLVANLIDPLSDKRFTLSG 255
              L C     P        EW                     + +   P    R   + 
Sbjct: 17  TAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTS 76

Query: 256 -------GNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGN 308
                   ++ + +  Q+ D G+Y CK     G   ++   L           R    G+
Sbjct: 77  NDVKSGDASINVTNL-QLSDIGTYQCKVKKAPGVA-NKKFLLTVLVKPSG--TRCFVDGS 132

Query: 309 QNWGKAMF--CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNY 366
           +  G      C+P      + + W +      +     +       +         +G Y
Sbjct: 133 EEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTP-WLAEMTSPVISVKNASSEYSGTY 191

Query: 367 SCNVQSKV 374
           SC VQ++V
Sbjct: 192 SCTVQNRV 199

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 64.3 bits (156), Expect = 1e-11
 Identities = 28/188 (14%), Positives = 51/188 (27%), Gaps = 29/188 (15%)

Query: 484 DITLSCYAGGYPNPSY----EWFKED-----------YVQDRLVANLIDPLSDKRFTLSG 528
              L C     P        EW                     + +   P    R   + 
Sbjct: 17  TAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTS 76

Query: 529 -------GNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGN 581
                   ++ + +  Q+ D G+Y CK     G   ++   L           R    G+
Sbjct: 77  NDVKSGDASINVTNL-QLSDIGTYQCKVKKAPGV-ANKKFLLTVLVKPSG--TRCFVDGS 132

Query: 582 QNWGKAMF--CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNY 639
           +  G      C+P      + + W +      +     +       +         +G Y
Sbjct: 133 EEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTP-WLAEMTSPVISVKNASSEYSGTY 191

Query: 640 SCNVQSKV 647
           SC VQ++V
Sbjct: 192 SCTVQNRV 199

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 63.2 bits (153), Expect = 3e-11
 Identities = 28/165 (16%), Positives = 54/165 (32%), Gaps = 22/165 (13%)

Query: 311 WGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRV------FVSYDGALYFSALEQIDAG 364
           W  +   +   +   + Y   + Y   + +   RV        S D ++  + L+  D G
Sbjct: 38  WLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIG 97

Query: 365 NYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC-VA 423
            Y C V+       +    F L V        L  P+        + + G+  +L+C   
Sbjct: 98  TYQCKVKKAPGVANKK---FLLTV--------LVKPSGTRCFVDGSEEIGNDFKLKCEPK 146

Query: 424 FGYPVPSYNWTRRGSPL--PRNAYFENFNRILTIPNVKMR--GPY 464
            G     + W +       P     E  + ++++ N      G Y
Sbjct: 147 EGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTY 191

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 58.2 bits (140), Expect = 1e-09
 Identities = 32/220 (14%), Positives = 55/220 (25%), Gaps = 77/220 (35%)

Query: 406 TFPEAP---KAGDKVRLECVAFGYPVPSYN----WTRRGSPLPR---------------N 443
           T PE       G+   L C     P         W    S                   N
Sbjct: 4   TTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDN 63

Query: 444 AYFENFNRI-------------LTIPNVKM--RGPY------------------------ 464
            Y +   R+             + + N+++   G Y                        
Sbjct: 64  YYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPS 123

Query: 465 FIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKR 523
             +   D   ++      ND  L C    G     +EW K          +     +   
Sbjct: 124 GTRCFVDGSEEIG-----NDFKLKCEPKEGSLPLQFEWQKLS--------DSQTMPTPWL 170

Query: 524 FTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
             ++   + + +    E  G+Y C   N+ GS     ++L
Sbjct: 171 AEMTSPVISVKNASS-EYSGTYSCTVQNRVGS-DQCMLRL 208

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 58.2 bits (140), Expect = 1e-09
 Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 16/102 (15%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
           P   +   D   ++      ND  L C    G     +EW K          +     + 
Sbjct: 122 PSGTRCFVDGSEEIG-----NDFKLKCEPKEGSLPLQFEWQKLS--------DSQTMPTP 168

Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
               ++   + + +    E  G+Y C   N+ GS     ++L
Sbjct: 169 WLAEMTSPVISVKNASS-EYSGTYSCTVQNRVGS-DQCMLRL 208

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 86.6 bits (214), Expect = 9e-20
 Identities = 22/151 (14%), Positives = 50/151 (33%), Gaps = 25/151 (16%)

Query: 612 VEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLK 671
            +  + ++   +  L    L+  D+  Y C V+ +  +       F L     ++  Q  
Sbjct: 56  ADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEV--QLLVFGLTANSDTHLLQ-- 111

Query: 672 FPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNV 731
                          G  + L   +     PS          PR    +   + L++  +
Sbjct: 112 ---------------GQSLTLTLESPPGSSPSVQCRS-----PRGKNIQG-GKTLSVSQL 150

Query: 732 KVEDQGEYICRASNDRSALESSVTISIQAEP 762
           +++D G + C    ++  +E  + I + A  
Sbjct: 151 ELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ 181

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 80.8 bits (199), Expect = 1e-17
 Identities = 27/151 (17%), Positives = 46/151 (30%), Gaps = 30/151 (19%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPL---------------------PRNAYFENFN 723
           K GD V L C A       ++W                             R + ++  N
Sbjct: 8   KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 67

Query: 724 RILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTC 783
             L I N+K+ED   YIC   + +  ++  V   + A  +  +            LT T 
Sbjct: 68  FPLIIKNLKIEDSDTYICEVEDQKEEVQLLV-FGLTANSDTHLLQGQ-------SLTLTL 119

Query: 784 EAFGVPDVTYSWFR-NGELGHQMTDLLLKAV 813
           E+      +       G+       L +  +
Sbjct: 120 ESPPGSSPSVQCRSPRGKNIQGGKTLSVSQL 150

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 78.1 bits (192), Expect = 1e-16
 Identities = 28/186 (15%), Positives = 56/186 (30%), Gaps = 52/186 (27%)

Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPL---------------------PRNAYFENFN 450
           K GD V L C A       ++W                             R + ++  N
Sbjct: 8   KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 67

Query: 451 RILTIPNVKM--RGPYF------IKQPTDVVFDLSKRSILN-----DITLSCYAGGYPNP 497
             L I N+K+     Y        ++   +VF L+  S  +      +TL+  +    +P
Sbjct: 68  FPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSP 127

Query: 498 SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSII 557
           S +                      +    G  L ++   +++D G++ C         +
Sbjct: 128 SVQCRSP----------------RGKNIQGGKTLSVSQL-ELQDSGTWTCTVLQNQKK-V 169

Query: 558 SESVQL 563
              + +
Sbjct: 170 EFKIDI 175

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 56.9 bits (137), Expect = 2e-09
 Identities = 28/177 (15%), Positives = 53/177 (29%), Gaps = 33/177 (18%)

Query: 210 NDITLSCYAGGYPNPSYEWFKED-----YVQDRLVANLIDPLSDK------RFTLSGGNL 258
           + + L+C A    +  + W   +       Q   +      L+D+       +      L
Sbjct: 11  DTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPL 70

Query: 259 IINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMF-C 317
           II +  ++ED  +Y C+  ++      E VQL       F L    +             
Sbjct: 71  IIKNL-KIEDSDTYICEVEDQ-----KEEVQL-----LVFGLTANSDTHLLQGQSLTLTL 119

Query: 318 DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 374
           +        +               +   +     L  S LE  D+G ++C V    
Sbjct: 120 E-SPPGSSPSVQCRS---------PRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQ 166

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 56.1 bits (135), Expect = 4e-09
 Identities = 17/128 (13%), Positives = 39/128 (30%), Gaps = 27/128 (21%)

Query: 339 VEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLK 398
            +  + ++   +  L    L+  D+  Y C V+ +  +       F L     ++  Q  
Sbjct: 56  ADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEV--QLLVFGLTANSDTHLLQ-- 111

Query: 399 FPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNV 458
                          G  + L   +     PS          PR    +   + L++  +
Sbjct: 112 ---------------GQSLTLTLESPPGSSPSVQCRS-----PRGKNIQG-GKTLSVSQL 150

Query: 459 KM--RGPY 464
           ++   G +
Sbjct: 151 ELQDSGTW 158

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 54.6 bits (131), Expect = 1e-08
 Identities = 9/80 (11%), Positives = 25/80 (31%), Gaps = 18/80 (22%)

Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
            +TL+  +    +PS +                      +    G  L ++   +++D G
Sbjct: 114 SLTLTLESPPGSSPSVQCRSP----------------RGKNIQGGKTLSVSQL-ELQDSG 156

Query: 271 SYHCKASNKFGSIISESVQL 290
           ++ C         +   + +
Sbjct: 157 TWTCTVLQNQKK-VEFKIDI 175

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 85.7 bits (212), Expect = 2e-19
 Identities = 33/176 (18%), Positives = 56/176 (31%), Gaps = 31/176 (17%)

Query: 590 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQ-SKVS 648
           C+    +   +  W  +           +    + +L     +  D+G Y C  Q    S
Sbjct: 26  CNGNNFFEVSSTKWFHN---------GSLSEETNSSLNIVNAKFEDSGEYKCQHQQVNES 76

Query: 649 DTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF-GYPVPSYNWT 707
           +         L+VF      Q            E    G  + L C  +  + V    + 
Sbjct: 77  EPVY------LEVFSDWLLLQAS---------AEVVMEGQPLFLRCHGWRNWDVYKVIYY 121

Query: 708 RRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESS-VTISIQAEP 762
           + G  L     +   N  ++I N  VED G Y C     +   ES  + I++   P
Sbjct: 122 KDGEALK----YWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP 173

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 74.2 bits (182), Expect = 2e-15
 Identities = 29/116 (25%), Positives = 43/116 (37%), Gaps = 11/116 (9%)

Query: 687 GDKVRLECVAFG-YPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASN 745
           G+ V L C     + V S  W   GS           N  L I N K ED GEY C+   
Sbjct: 19  GENVTLTCNGNNFFEVSSTKWFHNGSLSEET------NSSLNIVNAKFEDSGEYKCQHQQ 72

Query: 746 DRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDV-TYSWFRNGE 800
                   V + + ++        +  M+ Q  L   C  +   DV    ++++GE
Sbjct: 73  --VNESEPVYLEVFSDWLLLQASAEVVMEGQ-PLFLRCHGWRNWDVYKVIYYKDGE 125

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 69.9 bits (171), Expect = 5e-14
 Identities = 30/170 (17%), Positives = 50/170 (29%), Gaps = 41/170 (24%)

Query: 414 GDKVRLECVAFG-YPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMR--GPY------ 464
           G+ V L C     + V S  W   GS           N  L I N K    G Y      
Sbjct: 19  GENVTLTCNGNNFFEVSSTKWFHNGSLSEET------NSSLNIVNAKFEDSGEYKCQHQQ 72

Query: 465 --------FIKQPTDVVFDLSKRSIL--NDITLSCYA-GGYPNPSYEWFKEDYVQDRLVA 513
                          ++   S   ++    + L C+    +      ++K+         
Sbjct: 73  VNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDG-------- 124

Query: 514 NLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
                    ++     N+ I +   VED G+Y+C          SE + +
Sbjct: 125 ------EALKYWYENHNISITNA-TVEDSGTYYCTGKVWQLDYESEPLNI 167

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 57.2 bits (138), Expect = 1e-09
 Identities = 25/152 (16%), Positives = 45/152 (29%), Gaps = 32/152 (21%)

Query: 317 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQ-SKVS 375
           C+    +   +  W  +           +    + +L     +  D+G Y C  Q    S
Sbjct: 26  CNGNNFFEVSSTKWFHN---------GSLSEETNSSLNIVNAKFEDSGEYKCQHQQVNES 76

Query: 376 DTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF-GYPVPSYNWT 434
           +         L+VF      Q            E    G  + L C  +  + V    + 
Sbjct: 77  EPVY------LEVFSDWLLLQAS---------AEVVMEGQPLFLRCHGWRNWDVYKVIYY 121

Query: 435 RRGSPLPRNAYFENFNRILTIPNVKMR--GPY 464
           + G  L     +   N  ++I N  +   G Y
Sbjct: 122 KDGEALK----YWYENHNISITNATVEDSGTY 149

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 55.3 bits (133), Expect = 6e-09
 Identities = 32/192 (16%), Positives = 59/192 (30%), Gaps = 34/192 (17%)

Query: 186 IPRGPYFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLID 244
           +P+ P     P              ++TL+C     +   S +WF               
Sbjct: 1   VPQKPKVSLNPPWNRIFKG-----ENVTLTCNGNNFFEVSSTKWFHNG------------ 43

Query: 245 PLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAP 304
                    +  +L I + +  ED G Y C+         SE V L   F     L+ + 
Sbjct: 44  ----SLSEETNSSLNIVNAK-FEDSGEYKCQHQQ---VNESEPVYLEV-FSDWLLLQASA 94

Query: 305 EIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAG 364
           E+  +     + C    N+      + +D       E  + +   +  +  +     D+G
Sbjct: 95  EVVMEGQPLFLRCHGWRNWDVYKVIYYKD------GEALKYWYE-NHNISITNATVEDSG 147

Query: 365 NYSCNVQSKVSD 376
            Y C  +    D
Sbjct: 148 TYYCTGKVWQLD 159

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 15/106 (14%), Positives = 33/106 (31%), Gaps = 22/106 (20%)

Query: 186 IPRGPYFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLID 244
           +      ++   +VV           + L C+    +      ++K+             
Sbjct: 83  VFSDWLLLQASAEVVM------EGQPLFLRCHGWRNWDVYKVIYYKDG------------ 124

Query: 245 PLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
                ++     N+ I +   VED G+Y+C          SE + +
Sbjct: 125 --EALKYWYENHNISITNA-TVEDSGTYYCTGKVWQLDYESEPLNI 167

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 82.8 bits (205), Expect = 3e-19
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 2/83 (2%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF--ENFNRILTIPNVKVEDQGEYICR 742
             G+ + + C A G P P   W +    L  ++    ++ NR LTI  V+ ED+G Y C+
Sbjct: 23  SIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQ 82

Query: 743 ASNDRSALESSVTISIQAEPNFT 765
           A +     +      I+     T
Sbjct: 83  ACSVLGCAKVEAFFIIEGAQEKT 105

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 68.1 bits (167), Expect = 4e-14
 Identities = 23/97 (23%), Positives = 32/97 (32%), Gaps = 14/97 (14%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           P       +    +        I +SC A G P P   WFK++          +   S  
Sbjct: 11  PTITGNLENQTTSIG-----ESIEVSCTASGNPPPQIMWFKDN--------ETLVEDSGI 57

Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE 286
                  NL I    + ED G Y C+A +  G    E
Sbjct: 58  VLKDGNRNLTIRRV-RKEDEGLYTCQACSVLGCAKVE 93

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 68.1 bits (167), Expect = 4e-14
 Identities = 23/97 (23%), Positives = 32/97 (32%), Gaps = 14/97 (14%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
           P       +    +        I +SC A G P P   WFK++          +   S  
Sbjct: 11  PTITGNLENQTTSIG-----ESIEVSCTASGNPPPQIMWFKDN--------ETLVEDSGI 57

Query: 523 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE 559
                  NL I    + ED G Y C+A +  G    E
Sbjct: 58  VLKDGNRNLTIRRV-RKEDEGLYTCQACSVLGCAKVE 93

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 48.1 bits (115), Expect = 4e-07
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF--ENFNRILTIPNVK 459
             G+ + + C A G P P   W +    L  ++    ++ NR LTI  V+
Sbjct: 23  SIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVR 72

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 5/59 (8%)

Query: 754 VTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGEL-----GHQMTD 807
           +T+  +  P  T  L ++       +  +C A G P     WF++ E      G  + D
Sbjct: 3   LTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD 61

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 82.9 bits (205), Expect = 1e-18
 Identities = 30/173 (17%), Positives = 55/173 (31%), Gaps = 31/173 (17%)

Query: 590 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQ-SKVS 648
           C    +    +  W  +           +  ++    Y       D+G Y+C    + +S
Sbjct: 26  CQGARSPESDSIQWFHN---------GNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSLS 76

Query: 649 DTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF-GYPVPSYNWT 707
           D         L V       Q          F E    G+ + L C ++   P+    + 
Sbjct: 77  DP------VHLTVLFEWLVLQTP-----HLEFQE----GETIMLRCHSWKDKPLVKVTFF 121

Query: 708 RRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALES-SVTISIQ 759
           + G        F + +   +IP       G+Y C  +   +   S  VTI++Q
Sbjct: 122 QNGKSQK----FSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITVQ 170

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 80.6 bits (199), Expect = 9e-18
 Identities = 23/116 (19%), Positives = 43/116 (37%), Gaps = 11/116 (9%)

Query: 687 GDKVRLECVAFGYP-VPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASN 745
            D V L C     P   S  W   G+ +P +       +          D GEY C+   
Sbjct: 19  EDSVTLTCQGARSPESDSIQWFHNGNLIPTH------TQPSYRFKANNNDSGEYTCQTGQ 72

Query: 746 DRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAF-GVPDVTYSWFRNGE 800
             ++L   V +++  E         +  + +  +   C ++   P V  ++F+NG+
Sbjct: 73  --TSLSDPVHLTVLFEWLVLQTPHLEFQEGE-TIMLRCHSWKDKPLVKVTFFQNGK 125

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 73.7 bits (181), Expect = 2e-15
 Identities = 26/175 (14%), Positives = 43/175 (24%), Gaps = 51/175 (29%)

Query: 414 GDKVRLECVAFGYP-VPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMR--GPY------ 464
            D V L C     P   S  W   G+ +P +       +            G Y      
Sbjct: 19  EDSVTLTCQGARSPESDSIQWFHNGNLIPTH------TQPSYRFKANNNDSGEYTCQTGQ 72

Query: 465 ---------------FIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQ 508
                           + Q   + F          I L C++    P     +F+     
Sbjct: 73  TSLSDPVHLTVLFEWLVLQTPHLEFQEG-----ETIMLRCHSWKDKPLVKVTFFQNG--- 124

Query: 509 DRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
                        ++F+       I         G YHC  +  +    S+ V +
Sbjct: 125 -----------KSQKFSHLDPTFSIPQA-NHSHSGDYHCTGNIGYTLFSSKPVTI 167

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 57.5 bits (139), Expect = 1e-09
 Identities = 24/163 (14%), Positives = 41/163 (25%), Gaps = 33/163 (20%)

Query: 212 ITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
           +TL+C       + S +WF                                      D G
Sbjct: 22  VTLTCQGARSPESDSIQWFHNG----------------NLIPTHTQPSYRFKA-NNNDSG 64

Query: 271 SYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKA--MFCDPPTNYPGVNY 328
            Y C+      + +S+ V L   F          E      G+   + C    + P V  
Sbjct: 65  EYTCQTGQ---TSLSDPVHLTVLFEWLVLQTPHLEF---QEGETIMLRCHSWKDKPLVKV 118

Query: 329 YWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQ 371
            + ++          + F   D            +G+Y C   
Sbjct: 119 TFFQN-------GKSQKFSHLDPTFSIPQANHSHSGDYHCTGN 154

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 54.4 bits (131), Expect = 9e-09
 Identities = 24/152 (15%), Positives = 44/152 (28%), Gaps = 32/152 (21%)

Query: 317 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQ-SKVS 375
           C    +    +  W  +           +  ++    Y       D+G Y+C    + +S
Sbjct: 26  CQGARSPESDSIQWFHN---------GNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSLS 76

Query: 376 DTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF-GYPVPSYNWT 434
           D         L V       Q          F E    G+ + L C ++   P+    + 
Sbjct: 77  DP------VHLTVLFEWLVLQTP-----HLEFQE----GETIMLRCHSWKDKPLVKVTFF 121

Query: 435 RRGSPLPRNAYFENFNRILTIPNVKMR--GPY 464
           + G        F + +   +IP       G Y
Sbjct: 122 QNGKSQK----FSHLDPTFSIPQANHSHSGDY 149

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 53.3 bits (128), Expect = 3e-08
 Identities = 13/82 (15%), Positives = 24/82 (29%), Gaps = 16/82 (19%)

Query: 210 NDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 268
             I L C++    P     +F+                  ++F+       I        
Sbjct: 101 ETIMLRCHSWKDKPLVKVTFFQNG--------------KSQKFSHLDPTFSIPQA-NHSH 145

Query: 269 RGSYHCKASNKFGSIISESVQL 290
            G YHC  +  +    S+ V +
Sbjct: 146 SGDYHCTGNIGYTLFSSKPVTI 167

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 80.6 bits (199), Expect = 1e-18
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 4/77 (5%)

Query: 685 KAGDKVRLECVAF-GYPVPSYNWTRR-GSPLPRNAYFENFNRILTIPNVKVEDQGEYICR 742
           + G  V   C A    P  +  WTR     LP  A   N   ILTI NV+  D G Y+C 
Sbjct: 23  RPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFN--GILTIRNVQPSDAGTYVCT 80

Query: 743 ASNDRSALESSVTISIQ 759
            SN  +  + + T+ +Q
Sbjct: 81  GSNMFAMDQGTATLHVQ 97

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 63.3 bits (154), Expect = 1e-12
 Identities = 21/81 (25%), Positives = 27/81 (33%), Gaps = 14/81 (17%)

Query: 211 DITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269
           D+T  C A    P  +  W +          N   P    R     G L I +  Q  D 
Sbjct: 27  DVTFICTAKSKSPAYTLVWTRLH--------NGKLP---SRAMDFNGILTIRNV-QPSDA 74

Query: 270 GSYHCKASNKFGSIISESVQL 290
           G+Y C  SN F      +  L
Sbjct: 75  GTYVCTGSNMFAM-DQGTATL 94

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 63.3 bits (154), Expect = 1e-12
 Identities = 21/81 (25%), Positives = 27/81 (33%), Gaps = 14/81 (17%)

Query: 484 DITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 542
           D+T  C A    P  +  W +          N   P    R     G L I +  Q  D 
Sbjct: 27  DVTFICTAKSKSPAYTLVWTRLH--------NGKLP---SRAMDFNGILTIRNV-QPSDA 74

Query: 543 GSYHCKASNKFGSIISESVQL 563
           G+Y C  SN F      +  L
Sbjct: 75  GTYVCTGSNMFAM-DQGTATL 94

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 51.3 bits (123), Expect = 2e-08
 Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 6/57 (10%)

Query: 412 KAGDKVRLECVAF-GYPVPSYNWTRR-GSPLPRNAYFENFNRILTIPNVKM--RGPY 464
           + G  V   C A    P  +  WTR     LP  A     N ILTI NV+    G Y
Sbjct: 23  RPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDF--NGILTIRNVQPSDAGTY 77

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 82.6 bits (204), Expect = 2e-18
 Identities = 30/173 (17%), Positives = 54/173 (31%), Gaps = 31/173 (17%)

Query: 590 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQ-SKVS 648
           C    +    +  W  +         + +  S   + +  A    D+G Y C    S +S
Sbjct: 29  CQGAYSPEDNSTQWFHN---------ESLISSQASSYFIDAATVNDSGEYRCQTNLSTLS 79

Query: 649 DTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF-GYPVPSYNWT 707
           D         L+V                +      K  D + L C ++    +    + 
Sbjct: 80  DP------VQLEVH---------IGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYL 124

Query: 708 RRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALES-SVTISIQ 759
           + G        + + N    IP   ++D G Y CR       + S +V I+I 
Sbjct: 125 QNGKDRK----YFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITIT 173

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 77.6 bits (191), Expect = 1e-16
 Identities = 21/116 (18%), Positives = 35/116 (30%), Gaps = 11/116 (9%)

Query: 687 GDKVRLECVAFGYPVP-SYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASN 745
            D V L+C     P   S  W    S +              I    V D GEY C+ + 
Sbjct: 22  KDSVTLKCQGAYSPEDNSTQWFHNESLISSQ------ASSYFIDAATVNDSGEYRCQTNL 75

Query: 746 DRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAF-GVPDVTYSWFRNGE 800
             S L   V + +               +    +   C ++        ++ +NG+
Sbjct: 76  --STLSDPVQLEVHIGWLLLQAPRWVFKEED-PIHLRCHSWKNTALHKVTYLQNGK 128

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 69.1 bits (169), Expect = 1e-13
 Identities = 24/170 (14%), Positives = 46/170 (27%), Gaps = 41/170 (24%)

Query: 414 GDKVRLECVAFGYPVP-SYNWTRRGSPLPRNAYFENFNRILTIPNVKMR--GPYF----- 465
            D V L+C     P   S  W    S +              I    +   G Y      
Sbjct: 22  KDSVTLKCQGAYSPEDNSTQWFHNESLISSQ------ASSYFIDAATVNDSGEYRCQTNL 75

Query: 466 ---------IKQPTDVVFDLSKRSIL--NDITLSCYA-GGYPNPSYEWFKEDYVQDRLVA 513
                          ++    +      + I L C++          + +          
Sbjct: 76  STLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNG-------- 127

Query: 514 NLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
                  D+++     +  I     ++D GSY C+      ++ SE+V +
Sbjct: 128 ------KDRKYFHHNSDFHIPKA-TLKDSGSYFCRGLVGSKNVSSETVNI 170

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 53.3 bits (128), Expect = 2e-08
 Identities = 25/163 (15%), Positives = 45/163 (27%), Gaps = 33/163 (20%)

Query: 212 ITLSCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
           +TL C     P   S +WF  +                   +    +  I+    V D G
Sbjct: 25  VTLKCQGAYSPEDNSTQWFHNE----------------SLISSQASSYFIDAAT-VNDSG 67

Query: 271 SYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMF--CDPPTNYPGVNY 328
            Y C+ +    S +S+ VQL                        +   C    N      
Sbjct: 68  EYRCQTNL---STLSDPVQLEVHIGWLLLQAPRWVF---KEEDPIHLRCHSWKNTALHKV 121

Query: 329 YWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQ 371
            + ++          R +  ++   +       D+G+Y C   
Sbjct: 122 TYLQN-------GKDRKYFHHNSDFHIPKATLKDSGSYFCRGL 157

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 22/103 (21%)

Query: 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLS 247
           G   ++ P  V  +         I L C++          + +                 
Sbjct: 89  GWLLLQAPRWVFKEED------PIHLRCHSWKNTALHKVTYLQNG--------------K 128

Query: 248 DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
           D+++     +  I     ++D GSY C+      ++ SE+V +
Sbjct: 129 DRKYFHHNSDFHIPKA-TLKDSGSYFCRGLVGSKNVSSETVNI 170

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 83.1 bits (205), Expect = 3e-18
 Identities = 28/192 (14%), Positives = 59/192 (30%), Gaps = 18/192 (9%)

Query: 585 GKAMF-CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDG-----ALYFSALEQIDAGN 638
           G+  F              +  +     + E  +  +  D       ++   L+  D G 
Sbjct: 18  GQVRFWMQAEKLSGNAKVNYIFNEKE--IFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGT 75

Query: 639 YSC---NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA----GDKVR 691
           Y+    + ++    T         K+   + FQ+ ++       F E           V 
Sbjct: 76  YTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVL 135

Query: 692 LECVAFGYPVPS-YNWTRRGSPLPRNAY--FENFNRILTIPNVKVEDQGEYICRASNDRS 748
           L+C        +   W +    +  +    F++    L I     +D G Y     +DR 
Sbjct: 136 LKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRG 195

Query: 749 ALESSVTISIQA 760
             +S + +  +A
Sbjct: 196 KDKSRLKLVDEA 207

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 73.8 bits (181), Expect = 4e-15
 Identities = 14/145 (9%), Positives = 40/145 (27%), Gaps = 27/145 (18%)

Query: 682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF------ENFNRILTIPNVKVED 735
           E  + G                 N+      +     +            + +  ++ ED
Sbjct: 13  EILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDED 72

Query: 736 QGEYICRASNDRSALESSVTISIQA-------------------EPNFTIPLTDKHMDNQ 776
           +G Y  +  + ++   S+V +                        P+F   L+ +     
Sbjct: 73  EGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGEC 132

Query: 777 ADLTWTCEAFGV-PDVTYSWFRNGE 800
            ++   C+   +  +    W+++  
Sbjct: 133 -NVLLKCKVANIKKETHIVWYKDER 156

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 61.5 bits (149), Expect = 8e-11
 Identities = 22/209 (10%), Positives = 50/209 (23%), Gaps = 72/209 (34%)

Query: 409 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF------ENFNRILTIPNV---- 458
           E  + G                 N+      +     +            + +  +    
Sbjct: 13  EILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDED 72

Query: 459 -----------------------------------------KMRGPYFIKQPTDVVFDLS 477
                                                    + +GP+F++  +  V    
Sbjct: 73  EGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGEC 132

Query: 478 KRSILNDITLSCYAGGYPNPS-YEWFKEDYVQDRLVANLIDPLSDKRFTLSGGN--LIIN 534
                 ++ L C        +   W+K++          I    D++     G   L+I 
Sbjct: 133 ------NVLLKCKVANIKKETHIVWYKDE--------REISV--DEKHDFKDGICTLLIT 176

Query: 535 DPRQVEDRGSYHCKASNKFGSIISESVQL 563
           +  + +D G Y     +  G   S  ++L
Sbjct: 177 EFSK-KDAGIYEVILKDDRGKDKS-RLKL 203

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 55.7 bits (134), Expect = 8e-09
 Identities = 26/206 (12%), Positives = 50/206 (24%), Gaps = 35/206 (16%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
             F K    V      +                N    +   +          I      
Sbjct: 3   DPFTKSELAVEILEKGQVRF----WMQAEKLSGNAKVNYIFNE--------KEIFEGPKY 50

Query: 250 RFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFI---------- 295
           +  +        + +    Q ED G+Y  +  +   +  S  V +   F           
Sbjct: 51  KMHIDRNTGIIEMFMEKL-QDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQR 109

Query: 296 GEFNLKRAPEIGNQNWGKA-------MFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVS 348
            E+  K+ P        +        + C         +  W +D       ++K  F  
Sbjct: 110 QEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDERE-ISVDEKHDFKD 168

Query: 349 YDGALYFSALEQIDAGNYSCNVQSKV 374
               L  +   + DAG Y   ++   
Sbjct: 169 GICTLLITEFSKKDAGIYEVILKDDR 194

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 55.7 bits (134), Expect = 8e-09
 Identities = 26/206 (12%), Positives = 50/206 (24%), Gaps = 35/206 (16%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
             F K    V      +                N    +   +          I      
Sbjct: 3   DPFTKSELAVEILEKGQVRF----WMQAEKLSGNAKVNYIFNE--------KEIFEGPKY 50

Query: 523 RFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFI---------- 568
           +  +        + +    Q ED G+Y  +  +   +  S  V +   F           
Sbjct: 51  KMHIDRNTGIIEMFMEKL-QDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQR 109

Query: 569 GEFNLKRAPEIGNQNWGKA-------MFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVS 621
            E+  K+ P        +        + C         +  W +D       ++K  F  
Sbjct: 110 QEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDERE-ISVDEKHDFKD 168

Query: 622 YDGALYFSALEQIDAGNYSCNVQSKV 647
               L  +   + DAG Y   ++   
Sbjct: 169 GICTLLITEFSKKDAGIYEVILKDDR 194

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 54.6 bits (131), Expect = 2e-08
 Identities = 19/113 (16%), Positives = 39/113 (34%), Gaps = 21/113 (18%)

Query: 181 ENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPS-YEWFKEDYVQDRLV 239
                  +GP+F++  +  V          ++ L C        +   W+K++       
Sbjct: 109 RQEWIRKQGPHFVEYLSWEVTGEC------NVLLKCKVANIKKETHIVWYKDE------- 155

Query: 240 ANLIDPLSDKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
              I    D++     G   L+I +  + +D G Y     +  G   S  ++L
Sbjct: 156 -REISV--DEKHDFKDGICTLLITEFSK-KDAGIYEVILKDDRGKDKS-RLKL 203

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 53.4 bits (128), Expect = 4e-08
 Identities = 23/171 (13%), Positives = 48/171 (28%), Gaps = 20/171 (11%)

Query: 312 GKAMF-CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDG-----ALYFSALEQIDAGN 365
           G+  F              +  +     + E  +  +  D       ++   L+  D G 
Sbjct: 18  GQVRFWMQAEKLSGNAKVNYIFNEKE--IFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGT 75

Query: 366 YSC---NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA----GDKVR 418
           Y+    + ++    T         K+   + FQ+ ++       F E           V 
Sbjct: 76  YTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVL 135

Query: 419 LECVAFGYPVPS-YNWTRRGSPLPRNAY--FENFNRILTIPNVKM--RGPY 464
           L+C        +   W +    +  +    F++    L I        G Y
Sbjct: 136 LKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIY 186

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 84.3 bits (208), Expect = 4e-18
 Identities = 42/284 (14%), Positives = 78/284 (27%), Gaps = 50/284 (17%)

Query: 485 ITLSCYA-GGYPNPSYE--WFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 541
            T+ C   G +P    +      D   +  V    D  S            ++   + E 
Sbjct: 21  GTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFS--------AKASVSVTAEDEG 72

Query: 542 RGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKRAPEIGNQNWGKA--MFCDPPTNY 596
                C       S  +    ++                E      G    + C+     
Sbjct: 73  TQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSE------GTEVTVKCEAHPR- 125

Query: 597 PGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV-SDTGRNGP 655
             V                          L   A  + +  ++SC+   +V         
Sbjct: 126 AKVTLNGVPAQPL-----------GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQ 174

Query: 656 FFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPR 715
              L+V       +   P N+  T+PE      +    C A+G P+P     + G+    
Sbjct: 175 TRELRVLYGPRLDERDCPGNW--TWPE----NSQQTPMCQAWGNPLPELKCLKDGTFPL- 227

Query: 716 NAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 759
                    I     V  + +G Y+CRA + +  +   VT+++ 
Sbjct: 228 --------PIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVL 263

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 76.2 bits (187), Expect = 2e-15
 Identities = 25/178 (14%), Positives = 43/178 (24%), Gaps = 29/178 (16%)

Query: 632 EQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVR 691
           E       +C V                            FP             G +V 
Sbjct: 69  EDEGTQRLTCAVILGNQSQET-----------LQTVTIYSFPAPNVILTKPEVSEGTEVT 117

Query: 692 LECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQG-EYICRASND---- 746
           ++C A      + N        PR            +     ED G  + C A+ +    
Sbjct: 118 VKCEAHPRAKVTLNGVPAQPLGPR---------AQLLLKATPEDNGRSFSCSATLEVAGQ 168

Query: 747 RSALESSVTISIQAEPNFTIPLTDKH---MDNQADLTWTCEAFGVPDVTYSWFRNGEL 801
                 +  + +   P         +    +N    T  C+A+G P       ++G  
Sbjct: 169 LIHKNQTRELRVLYGPRLDERDCPGNWTWPENS-QQTPMCQAWGNPLPELKCLKDGTF 225

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 63.5 bits (154), Expect = 4e-11
 Identities = 28/141 (19%), Positives = 47/141 (33%), Gaps = 7/141 (4%)

Query: 679 TFPEAPKAGDKVRLECVAFG-YPVPSYNWT-----RRGSPLPRNAYFENFNRILTIPNVK 732
             P   +   +  + C   G +PV           +R +P           +       +
Sbjct: 10  VSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAE 69

Query: 733 VEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVT 792
            E      C       + E+  T++I + P   + LT   +    ++T  CEA     VT
Sbjct: 70  DEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVT 129

Query: 793 YSWFRNGELGHQMTDLLLKAV 813
            +      LG +   LLLKA 
Sbjct: 130 LNGVPAQPLGPR-AQLLLKAT 149

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 63.2 bits (153), Expect = 5e-11
 Identities = 36/224 (16%), Positives = 57/224 (25%), Gaps = 51/224 (22%)

Query: 359 EQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVR 418
           E       +C V                            FP             G +V 
Sbjct: 69  EDEGTQRLTCAVILGNQSQET-----------LQTVTIYSFPAPNVILTKPEVSEGTEVT 117

Query: 419 LECVAFGYPVPSYNWTRRGSPLPR-----NAYFENFNRILT-IPNVKMRGPYFIKQPTDV 472
           ++C A      + N        PR      A  E+  R  +    +++ G    K  T  
Sbjct: 118 VKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRE 177

Query: 473 VFDLSKRSILN-------------DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 519
           +  L    +                 T  C A G P P  +  K                
Sbjct: 178 LRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLK---------------- 221

Query: 520 SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
            D  F L  G  +       +  G+Y C+A +  G  ++  V +
Sbjct: 222 -DGTFPLPIGESVTV---TRDLEGTYLCRARSTQGE-VTREVTV 260

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 58.9 bits (142), Expect = 1e-09
 Identities = 33/238 (13%), Positives = 60/238 (25%), Gaps = 41/238 (17%)

Query: 212 ITLSCYA-GGYPNPSYE--WFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 268
            T+ C   G +P    +      D   +  V    D  S            ++   + E 
Sbjct: 21  GTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFS--------AKASVSVTAEDEG 72

Query: 269 RGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKRAPEIGNQNWGKA--MFCDPPTNY 323
                C       S  +    ++                E      G    + C+     
Sbjct: 73  TQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSE------GTEVTVKCEAHPR- 125

Query: 324 PGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV-SDTGRNGP 382
             V                          L   A  + +  ++SC+   +V         
Sbjct: 126 AKVTLNGVPAQPL-----------GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQ 174

Query: 383 FFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPL 440
              L+V       +   P N+  T+PE      +    C A+G P+P     + G+  
Sbjct: 175 TRELRVLYGPRLDERDCPGNW--TWPE----NSQQTPMCQAWGNPLPELKCLKDGTFP 226

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 50.1 bits (119), Expect = 1e-06
 Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 21/80 (26%)

Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
             T  C A G P P  +  K                 D  F L  G  +       +  G
Sbjct: 202 QQTPMCQAWGNPLPELKCLK-----------------DGTFPLPIGESVTV---TRDLEG 241

Query: 271 SYHCKASNKFGSIISESVQL 290
           +Y C+A +  G  ++  V +
Sbjct: 242 TYLCRARSTQGE-VTREVTV 260

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 31/274 (11%), Positives = 65/274 (23%), Gaps = 64/274 (23%)

Query: 406 TFPEAPKAGDKVRLECVAFG-YPVPSYNWT-----RRGSPLPRNAYFENFNRILTIPNVK 459
             P   +   +  + C   G +PV           +R +P           +       +
Sbjct: 10  VSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAE 69

Query: 460 MRGPYF-------------------IKQPTDVVFDLSKRSIL--NDITLSCYAGGYPNPS 498
             G                      I         L+K  +    ++T+ C A      +
Sbjct: 70  DEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVT 129

Query: 499 YEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSII- 557
                                      L     ++      ++  S+ C A+ +    + 
Sbjct: 130 LNGVPAQ-------------------PLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLI 170

Query: 558 --SESVQLAFGFIGEFNLKRAPEIGNQNWGKA--MFCDPPTNYPGVNYYWARDYFPNFVE 613
             +++ +L   +    + +  P              C    N P       +D     + 
Sbjct: 171 HKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGN-PLPELKCLKDGTFP-LP 228

Query: 614 EDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 647
             + V V+ D             G Y C  +S  
Sbjct: 229 IGESVTVTRD-----------LEGTYLCRARSTQ 251

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 82.8 bits (204), Expect = 4e-18
 Identities = 35/186 (18%), Positives = 56/186 (30%), Gaps = 15/186 (8%)

Query: 583 NWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCN 642
            W K        +     +    +          R  +  +G+L F  +   D G Y+ +
Sbjct: 32  AWYKGN--TTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLD 89

Query: 643 VQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVP 702
           +  +     +                       F +      K  D V L C++      
Sbjct: 90  MTDENYRRTQA---------TVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSNDIG-A 139

Query: 703 SYNWTRRGSPLPRN--AYFENFNRILTIPNVKVEDQGEYICRASNDRSALES-SVTISIQ 759
           +  W      L           N IL I  +K ED GEY C  SN  S   S S+ + I 
Sbjct: 140 NIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDII 199

Query: 760 AEPNFT 765
            +P+  
Sbjct: 200 FDPHHH 205

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 77.4 bits (190), Expect = 2e-16
 Identities = 27/177 (15%), Positives = 63/177 (35%), Gaps = 15/177 (8%)

Query: 210 NDITLSCYAGGYPNPSYEWFKED----------YVQDRLVANLIDPLSDKRFTLSGGNLI 259
           N++ L  +       ++ W+K +          +V +  +       S +    S G+L+
Sbjct: 15  NNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLL 74

Query: 260 INDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDP 319
                  +D G Y    +++       +V+            +           ++    
Sbjct: 75  FQMITM-KDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNT-TVKELDSVTLTC 132

Query: 320 PTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA-LYFSALEQIDAGNYSCNVQSKVS 375
            +N  G N  W  +     ++  +R+ +S + + L    +++ DAG Y C + + VS
Sbjct: 133 LSNDIGANIQWLFNSQS--LQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVS 187

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 69.3 bits (169), Expect = 2e-13
 Identities = 16/142 (11%), Positives = 36/142 (25%), Gaps = 23/142 (16%)

Query: 681 PEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE-------------------- 720
           P      + V L        + ++ W +  +                             
Sbjct: 8   PPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREII 67

Query: 721 NFNRILTIPNVKVEDQGEYICRASNDRSALESSVT--ISIQAEPNFTIPLTDKHMDNQAD 778
             N  L    + ++D G Y    +++      +       Q      + +T+  +     
Sbjct: 68  YSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDS 127

Query: 779 LTWTCEAFGVPDVTYSWFRNGE 800
           +T TC +         W  N +
Sbjct: 128 VTLTCLSND-IGANIQWLFNSQ 148

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 68.9 bits (168), Expect = 2e-13
 Identities = 27/199 (13%), Positives = 51/199 (25%), Gaps = 53/199 (26%)

Query: 408 PEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE-------------------- 447
           P      + V L        + ++ W +  +                             
Sbjct: 8   PPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREII 67

Query: 448 NFNRILTIPNVKMR--GPY-----------------FIKQPTDVVFDLSKRSIL----ND 484
             N  L    + M+  G Y                 F          L   +      + 
Sbjct: 68  YSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDS 127

Query: 485 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 544
           +TL+C +      + +W              +        + +   L I+  ++ ED G 
Sbjct: 128 VTLTCLSND-IGANIQWLFNS--------QSLQLTERMTLSQNNSILRIDPIKR-EDAGE 177

Query: 545 YHCKASNKFGSIISESVQL 563
           Y C+ SN      S S++L
Sbjct: 178 YQCEISNPVSVRRSNSIKL 196

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 56.6 bits (136), Expect = 4e-09
 Identities = 24/159 (15%), Positives = 41/159 (25%), Gaps = 16/159 (10%)

Query: 310 NWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCN 369
            W K        +     +    +          R  +  +G+L F  +   D G Y+ +
Sbjct: 32  AWYKGN--TTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLD 89

Query: 370 VQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVP 429
           +  +     +                       F +      K  D V L C++      
Sbjct: 90  MTDENYRRTQA---------TVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSNDIG-A 139

Query: 430 SYNWTRRGSPLPRN--AYFENFNRILTIPNVKM--RGPY 464
           +  W      L           N IL I  +K    G Y
Sbjct: 140 NIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEY 178

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 54.7 bits (131), Expect = 1e-08
 Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 10/81 (12%)

Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269
           + +TL+C +      + +W              +        + +   L I+  ++ ED 
Sbjct: 126 DSVTLTCLSND-IGANIQWLFNS--------QSLQLTERMTLSQNNSILRIDPIKR-EDA 175

Query: 270 GSYHCKASNKFGSIISESVQL 290
           G Y C+ SN      S S++L
Sbjct: 176 GEYQCEISNPVSVRRSNSIKL 196

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 79.0 bits (195), Expect = 5e-18
 Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 1/76 (1%)

Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASND 746
           GD ++L C        S NW R G  L  +         + + +    D G Y C  S+ 
Sbjct: 18  GDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEEVEVQDSVPADSGLYACVTSSP 76

Query: 747 RSALESSVTISIQAEP 762
             +  +  ++++    
Sbjct: 77  SGSDTTYFSVNVSDAL 92

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 62.8 bits (153), Expect = 2e-12
 Identities = 15/95 (15%), Positives = 26/95 (27%), Gaps = 19/95 (20%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL-SD 248
                +    +         + + L C        S  W ++              L   
Sbjct: 4   GSSGVEVESFLVHPG-----DLLQLRCRLRDDV-QSINWLRDG-----------VQLAES 46

Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI 283
            R  ++G  + + D     D G Y C  S+  GS 
Sbjct: 47  NRTRITGEEVEVQDSVP-ADSGLYACVTSSPSGSD 80

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 62.8 bits (153), Expect = 2e-12
 Identities = 15/95 (15%), Positives = 26/95 (27%), Gaps = 19/95 (20%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL-SD 521
                +    +         + + L C        S  W ++              L   
Sbjct: 4   GSSGVEVESFLVHPG-----DLLQLRCRLRDDV-QSINWLRDG-----------VQLAES 46

Query: 522 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI 556
            R  ++G  + + D     D G Y C  S+  GS 
Sbjct: 47  NRTRITGEEVEVQDSVP-ADSGLYACVTSSPSGSD 80

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 3/53 (5%)

Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKM--RGPY 464
           GD ++L C        S NW R G  L  +         + + +      G Y
Sbjct: 18  GDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEEVEVQDSVPADSGLY 69

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 78.2 bits (193), Expect = 9e-18
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 6/78 (7%)

Query: 686 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASN 745
            G  V L C     P P  +W + G PLP        + +L +P +  +DQG Y C A++
Sbjct: 24  PGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP-----SPVLILPEIGPQDQGTYSCVATH 78

Query: 746 DRSALESSVTISIQ-AEP 762
                + S  +SI   EP
Sbjct: 79  SSHGPQESRAVSISIIEP 96

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 61.3 bits (149), Expect = 8e-12
 Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 22/102 (21%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
              + +P               +TL+C     P+P   W K+             PL   
Sbjct: 11  VQLVVEPEGGAVAPG-----GTVTLTCEVPAQPSPQIHWMKDG-----------VPLPL- 53

Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI-ISESVQL 290
                   LI+ +    +D+G+Y C A++       S +V +
Sbjct: 54  ---PPSPVLILPE-IGPQDQGTYSCVATHSSHGPQESRAVSI 91

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 61.3 bits (149), Expect = 8e-12
 Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 22/102 (21%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
              + +P               +TL+C     P+P   W K+             PL   
Sbjct: 11  VQLVVEPEGGAVAPG-----GTVTLTCEVPAQPSPQIHWMKDG-----------VPLPL- 53

Query: 523 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI-ISESVQL 563
                   LI+ +    +D+G+Y C A++       S +V +
Sbjct: 54  ---PPSPVLILPE-IGPQDQGTYSCVATHSSHGPQESRAVSI 91

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 5/47 (10%)

Query: 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVK 459
            G  V L C     P P  +W + G PLP        + +L +P + 
Sbjct: 24  PGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP-----SPVLILPEIG 65

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 10/48 (20%), Positives = 15/48 (31%)

Query: 753 SVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
           S   S   E    +      +     +T TCE    P     W ++G 
Sbjct: 2   SSGSSGLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGV 49

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 78.7 bits (194), Expect = 1e-17
 Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 13/105 (12%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           P  ++ P+D++            TL+C A G P P+ EW+K        V    D     
Sbjct: 10  PRIVEHPSDLIVSKG-----EPATLNCKAEGRPTPTIEWYKGG----ERVETDKDDPRSH 60

Query: 250 RFTLSGGNLII----NDPRQVEDRGSYHCKASNKFGSIISESVQL 290
           R  L  G+L      +  +   D G Y C A N  G  +S    L
Sbjct: 61  RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASL 105

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 78.7 bits (194), Expect = 1e-17
 Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 13/105 (12%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
           P  ++ P+D++            TL+C A G P P+ EW+K        V    D     
Sbjct: 10  PRIVEHPSDLIVSKG-----EPATLNCKAEGRPTPTIEWYKGG----ERVETDKDDPRSH 60

Query: 523 RFTLSGGNLII----NDPRQVEDRGSYHCKASNKFGSIISESVQL 563
           R  L  G+L      +  +   D G Y C A N  G  +S    L
Sbjct: 61  RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASL 105

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 67.5 bits (165), Expect = 8e-14
 Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 17/109 (15%)

Query: 675 NFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI---- 725
           +FP    E P       G+   L C A G P P+  W + G  +  +      +R+    
Sbjct: 7   DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPS 66

Query: 726 --LTIPNV-----KVEDQGEYICRASNDR-SALESSVTISIQAEPNFTI 766
             L    +        D+G Y+C A N    A+    ++ + A  +   
Sbjct: 67  GSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHHHH 115

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 42.9 bits (101), Expect = 4e-05
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 5/57 (8%)

Query: 402 NFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRIL 453
           +FP    E P       G+   L C A G P P+  W + G  +  +      +R+L
Sbjct: 7   DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRML 63

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 81.5 bits (201), Expect = 1e-17
 Identities = 31/176 (17%), Positives = 55/176 (31%), Gaps = 31/176 (17%)

Query: 590 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQ-SKVS 648
           C    +    +  W  +         + +  S   + +  A    D+G Y C  Q S +S
Sbjct: 29  CQGAYSPEDQSTQWFHN---------ESLISSQASSYFIDAATVDDSGEYRCQTQLSTLS 79

Query: 649 DTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF-GYPVPSYNWT 707
           D         L+V                +      K  D + L C ++    +    + 
Sbjct: 80  DP------VQLEVH---------IGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYL 124

Query: 708 RRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALES-SVTISIQAEP 762
           + G        + + N    IP   ++D G Y CR       + S +V I+I    
Sbjct: 125 QNGKGRK----YFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGL 176

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 77.2 bits (190), Expect = 3e-16
 Identities = 23/132 (17%), Positives = 39/132 (29%), Gaps = 14/132 (10%)

Query: 687 GDKVRLECVAFGYPVP-SYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASN 745
            D V L+C     P   S  W    S +              I    V+D GEY C+   
Sbjct: 22  KDSVTLKCQGAYSPEDQSTQWFHNESLISSQ------ASSYFIDAATVDDSGEYRCQTQL 75

Query: 746 DRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAF-GVPDVTYSWFRNGE---L 801
             S L   V + +               +    +   C ++        ++ +NG+    
Sbjct: 76  --STLSDPVQLEVHIGWLLLQAPRWVFKEED-PIHLRCHSWKNTALHKVTYLQNGKGRKY 132

Query: 802 GHQMTDLLLKAV 813
            H  +D  +   
Sbjct: 133 FHHNSDFYIPKA 144

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 65.3 bits (159), Expect = 3e-12
 Identities = 24/170 (14%), Positives = 46/170 (27%), Gaps = 41/170 (24%)

Query: 414 GDKVRLECVAFGYPVP-SYNWTRRGSPLPRNAYFENFNRILTIPNVKMR--GPYF----- 465
            D V L+C     P   S  W    S +              I    +   G Y      
Sbjct: 22  KDSVTLKCQGAYSPEDQSTQWFHNESLISSQ------ASSYFIDAATVDDSGEYRCQTQL 75

Query: 466 ---------IKQPTDVVFDLSKRSIL--NDITLSCYA-GGYPNPSYEWFKEDYVQDRLVA 513
                          ++    +      + I L C++          + +          
Sbjct: 76  STLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNG-------- 127

Query: 514 NLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
                   +++     +  I     ++D GSY C+      ++ SE+VQ+
Sbjct: 128 ------KGRKYFHHNSDFYIP-KATLKDSGSYFCRGLVGSKNVSSETVQI 170

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 53.3 bits (128), Expect = 4e-08
 Identities = 24/152 (15%), Positives = 45/152 (29%), Gaps = 32/152 (21%)

Query: 317 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQ-SKVS 375
           C    +    +  W  +         + +  S   + +  A    D+G Y C  Q S +S
Sbjct: 29  CQGAYSPEDQSTQWFHN---------ESLISSQASSYFIDAATVDDSGEYRCQTQLSTLS 79

Query: 376 DTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF-GYPVPSYNWT 434
           D         L+V                +      K  D + L C ++    +    + 
Sbjct: 80  DP------VQLEVH---------IGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYL 124

Query: 435 RRGSPLPRNAYFENFNRILTIPNVKMR--GPY 464
           + G        + + N    IP   ++  G Y
Sbjct: 125 QNGKGRK----YFHHNSDFYIPKATLKDSGSY 152

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 49.9 bits (119), Expect = 6e-07
 Identities = 26/165 (15%), Positives = 46/165 (27%), Gaps = 43/165 (26%)

Query: 212 ITLSCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
           +TL C     P   S +WF  +                   +    +  I+    V+D G
Sbjct: 25  VTLKCQGAYSPEDQSTQWFHNE----------------SLISSQASSYFIDAAT-VDDSG 67

Query: 271 SYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAM-------FCDPPTNY 323
            Y C+      S +S+ VQL         +     +                 C    N 
Sbjct: 68  EYRCQTQL---STLSDPVQL--------EVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNT 116

Query: 324 PGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC 368
                 + ++          R +  ++   Y       D+G+Y C
Sbjct: 117 ALHKVTYLQN-------GKGRKYFHHNSDFYIPKATLKDSGSYFC 154

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 48.0 bits (114), Expect = 3e-06
 Identities = 13/82 (15%), Positives = 29/82 (35%), Gaps = 16/82 (19%)

Query: 210 NDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 268
           + I L C++          + +                  +++     +  I     ++D
Sbjct: 104 DPIHLRCHSWKNTALHKVTYLQNG--------------KGRKYFHHNSDFYIP-KATLKD 148

Query: 269 RGSYHCKASNKFGSIISESVQL 290
            GSY C+      ++ SE+VQ+
Sbjct: 149 SGSYFCRGLVGSKNVSSETVQI 170

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 80.5 bits (198), Expect = 1e-17
 Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 9/121 (7%)

Query: 687 GDKVRLECVAFGYPVP--SYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRAS 744
           G K+ L C           + W + G  L  +       +         +  GEY C   
Sbjct: 13  GSKILLTCSLNDSATEVTGHRWLKGGVVLKED---ALPGQKTEFKVDSDDQWGEYSCVFL 69

Query: 745 NDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVT-YSWFRNGELGH 803
            +      +  I +   P      + +H++        C++  VP VT ++W++  +   
Sbjct: 70  PEPMG---TANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSED 126

Query: 804 Q 804
           +
Sbjct: 127 K 127

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 78.9 bits (194), Expect = 5e-17
 Identities = 31/174 (17%), Positives = 49/174 (28%), Gaps = 31/174 (17%)

Query: 414 GDKVRLECVAFGYPVP--SYNWTRRGSPLPRNAYFENFNRILTIPNVKMR--GPY----- 464
           G K+ L C           + W + G  L  +       +            G Y     
Sbjct: 13  GSKILLTCSLNDSATEVTGHRWLKGGVVLKED---ALPGQKTEFKVDSDDQWGEYSCVFL 69

Query: 465 ---------FIKQPTDVVFDLSKRSIL--NDITLSCYAGGYP-NPSYEWFKEDYVQDRLV 512
                     +  P  V    S   I       L C +   P    + W+K    +D+  
Sbjct: 70  PEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKA- 128

Query: 513 ANLIDPLSDKRFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
             L++    + F  S      L I +     D G Y C  ++  GS     + L
Sbjct: 129 --LMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGS-DQAIITL 179

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 71.2 bits (174), Expect = 2e-14
 Identities = 27/175 (15%), Positives = 57/175 (32%), Gaps = 32/175 (18%)

Query: 597 PGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPF 656
               + W +      ++ED            F        G YSC    +   T      
Sbjct: 28  EVTGHRWLKGGVV--LKEDALP----GQKTEFKVDSDDQWGEYSCVFLPEPMGTAN---- 77

Query: 657 FPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYP-VPSYNWTRRGSPLPR 715
             +++      + +K          E    G+   L C +   P V  + W +      +
Sbjct: 78  --IQLHGPPRVKAVKSS--------EHINEGETAMLVCKSESVPPVTDWAWYKITDSEDK 127

Query: 716 NAYFENFNRI----------LTIPNVKVE-DQGEYICRASNDRSALESSVTISIQ 759
                + +R           L I N+ +E D G+Y C  ++ + + ++ +T+ ++
Sbjct: 128 ALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR 182

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 58.9 bits (142), Expect = 4e-10
 Identities = 19/110 (17%), Positives = 36/110 (32%), Gaps = 13/110 (11%)

Query: 185 KIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYP-NPSYEWFKEDYVQDRLVANLI 243
           ++   P      +    +  +        L C +   P    + W+K    +D+    L+
Sbjct: 79  QLHGPPRVKAVKSSEHINEGE-----TAMLVCKSESVPPVTDWAWYKITDSEDKA---LM 130

Query: 244 DPLSDKRFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
           +    + F  S      L I +     D G Y C  ++  GS     + L
Sbjct: 131 NGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGS-DQAIITL 179

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 48.9 bits (116), Expect = 1e-06
 Identities = 29/179 (16%), Positives = 44/179 (24%), Gaps = 38/179 (21%)

Query: 211 DITLSCYAGGYPNP--SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 268
            I L+C           + W K               L +    L G           + 
Sbjct: 15  KILLTCSLNDSATEVTGHRWLKGG-----------VVLKEDA--LPGQKTEFKVDSD-DQ 60

Query: 269 RGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMF-C----DPPTNY 323
            G Y C    +     +  +          + +   E G      AM  C     PP   
Sbjct: 61  WGEYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINE-GE----TAMLVCKSESVPPV-- 113

Query: 324 PGVNYYWARD----YFPNFVEEDKRVFVSYDGALY----FSALEQIDAGNYSCNVQSKV 374
              ++ W +             + R FVS           +   + D G Y CN  S  
Sbjct: 114 --TDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSK 170

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 48.5 bits (115), Expect = 1e-06
 Identities = 24/155 (15%), Positives = 42/155 (27%), Gaps = 34/155 (21%)

Query: 324 PGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPF 383
               + W +      ++ED            F        G YSC    +   T      
Sbjct: 28  EVTGHRWLKGGVV--LKEDALP----GQKTEFKVDSDDQWGEYSCVFLPEPMGTAN---- 77

Query: 384 FPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYP-VPSYNWTRRGSPLPR 442
             +++      + +K          E    G+   L C +   P V  + W +      +
Sbjct: 78  --IQLHGPPRVKAVK--------SSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDK 127

Query: 443 NAYFENFNRI----------LTIPNVKMR---GPY 464
                + +R           L I N+ M    G Y
Sbjct: 128 ALMNGSESRFFVSSSQGRSELHIENLNMEADPGQY 162

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 77.5 bits (191), Expect = 2e-17
 Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 6/87 (6%)

Query: 677 PKTFPEAP-----KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNV 731
           P   P          GD ++L C      V S NW R G  L  +         + + + 
Sbjct: 9   PWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTRITGEEVEVRDS 67

Query: 732 KVEDQGEYICRASNDRSALESSVTISI 758
              D G Y C  S+   +  +  ++++
Sbjct: 68  IPADSGLYACVTSSPSGSDTTYFSVNV 94

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 59.4 bits (144), Expect = 3e-11
 Identities = 17/104 (16%), Positives = 31/104 (29%), Gaps = 20/104 (19%)

Query: 454 TIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVA 513
           T+P    +      +   ++         + + L C        S  W ++         
Sbjct: 2   TLPEQA-QPWGVPVEVESLLVHPG-----DLLQLRCRLRDDV-QSINWLRDG-------- 46

Query: 514 NLIDPL-SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI 556
                L    R  ++G  + + D     D G Y C  S+  GS 
Sbjct: 47  ---VQLVESNRTRITGEEVEVRDS-IPADSGLYACVTSSPSGSD 86

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 59.4 bits (144), Expect = 3e-11
 Identities = 15/95 (15%), Positives = 27/95 (28%), Gaps = 19/95 (20%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL-SD 248
                +   ++         + + L C        S  W ++              L   
Sbjct: 10  WGVPVEVESLLVHPG-----DLLQLRCRLRDDV-QSINWLRDG-----------VQLVES 52

Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI 283
            R  ++G  + + D     D G Y C  S+  GS 
Sbjct: 53  NRTRITGEEVEVRDS-IPADSGLYACVTSSPSGSD 86

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 15/68 (22%), Positives = 21/68 (30%), Gaps = 8/68 (11%)

Query: 404 PKTFPEAP-----KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNV 458
           P   P          GD ++L C      V S NW R G  L  +         + + + 
Sbjct: 9   PWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTRITGEEVEVRDS 67

Query: 459 KM--RGPY 464
                G Y
Sbjct: 68  IPADSGLY 75

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 82.2 bits (202), Expect = 3e-17
 Identities = 45/339 (13%), Positives = 88/339 (25%), Gaps = 76/339 (22%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNP---SYEWFKEDYVQDRLVANLIDP 518
                Q     F        +  TL+    G  P P   +Y W K+D            P
Sbjct: 3   FTVSIQSNKRCFLAG-----DGFTLTATVAGDEPLPSNLTYTWTKDD-----------QP 46

Query: 519 LSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLA--FGFIGEFNLKRA 576
             +     +   L + D    E+ GSY     +       ES         +     +  
Sbjct: 47  HEN-----NTATLTVADA-TSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQ 100

Query: 577 PEIGNQNWGKAMFC-------DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFS 629
               +      +           P +   ++Y W++              +     +   
Sbjct: 101 HFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKG----------EDVIDTTQDITIQ 150

Query: 630 ALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDK 689
                  G Y+  V  +  D+  +      K+             +      +    G++
Sbjct: 151 EFTADKNGVYTVKVWGESEDSAASAS---TKI------MLATMNVDQDVVESKTVALGNE 201

Query: 690 VRLECVAF--------GYPVPS--YNW--TRRGSPLPRNAYFENFNRI----------LT 727
           + L  V          G P  +  YNW   R G   P     E    +          L 
Sbjct: 202 ISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLF 261

Query: 728 IPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTI 766
             +   +D  ++ C A   +   + +V ++       ++
Sbjct: 262 KESATYDDTAKFWCVAKLYQQIEDETVEVAASTSRKCSM 300

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 77.9 bits (191), Expect = 1e-15
 Identities = 33/234 (14%), Positives = 66/234 (28%), Gaps = 47/234 (20%)

Query: 590 CDPPTNYPG---VNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSK 646
                + P    + Y W +D  P           +    L  +     +AG+Y   VQ  
Sbjct: 24  ATVAGDEPLPSNLTYTWTKDDQP---------HENNTATLTVADATSENAGSYKVTVQDT 74

Query: 647 VSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECV---AFGYPVP- 702
            + T      F ++              N  +       +   V L      + G     
Sbjct: 75  DTMTSVESEVFLMEEAE--------LIVNITEPQHFYVSSQTDVELHATVKFSGGKTPAD 126

Query: 703 ----SYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 758
                Y+W++    +            +TI     +  G Y  +   +     +S +  I
Sbjct: 127 NYELHYSWSKGEDVIDTTQ-------DITIQEFTADKNGVYTVKVWGESEDSAASASTKI 179

Query: 759 QAEPNFTIPLTDKHM----DNQADLTWT------CEAFGVPDVT--YSWFRNGE 800
                       +       N+  L +        ++ G+P++T  Y+W+   E
Sbjct: 180 MLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQRE 233

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 72.2 bits (176), Expect = 8e-14
 Identities = 23/143 (16%), Positives = 44/143 (30%), Gaps = 21/143 (14%)

Query: 686 AGDKVRLECVAFG-YPVP---SYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYIC 741
           AGD   L     G  P+P   +Y WT+   P        N    LT+ +   E+ G Y  
Sbjct: 16  AGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHE------NNTATLTVADATSENAGSYKV 69

Query: 742 RASNDRSALESS---VTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFG--------VPD 790
              +  +          +               ++ +Q D+                  +
Sbjct: 70  TVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYE 129

Query: 791 VTYSWFRNGELGHQMTDLLLKAV 813
           + YSW +  ++     D+ ++  
Sbjct: 130 LHYSWSKGEDVIDTTQDITIQEF 152

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 59.8 bits (144), Expect = 8e-10
 Identities = 39/277 (14%), Positives = 70/277 (25%), Gaps = 66/277 (23%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNP---SYEWFKEDYVQDRLVANLIDP 245
                Q     F        +  TL+    G  P P   +Y W K+D            P
Sbjct: 3   FTVSIQSNKRCFLAG-----DGFTLTATVAGDEPLPSNLTYTWTKDD-----------QP 46

Query: 246 LSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLA--FGFIGEFNLKRA 303
             +     +   L + D    E+ GSY     +       ES         +     +  
Sbjct: 47  HEN-----NTATLTVADA-TSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQ 100

Query: 304 PEIGNQNWGKAMFC-------DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFS 356
               +      +           P +   ++Y W++              +     +   
Sbjct: 101 HFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKG----------EDVIDTTQDITIQ 150

Query: 357 ALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDK 416
                  G Y+  V  +  D+  +      K+             +      +    G++
Sbjct: 151 EFTADKNGVYTVKVWGESEDSAASA---STKI------MLATMNVDQDVVESKTVALGNE 201

Query: 417 VRLECVAF--------GYPVPS--YNW--TRRGSPLP 441
           + L  V          G P  +  YNW   R G   P
Sbjct: 202 ISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSP 238

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 49.1 bits (116), Expect = 3e-06
 Identities = 31/206 (15%), Positives = 62/206 (30%), Gaps = 50/206 (24%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSC---YAGGYPNP-----SYEWFKEDYVQDRLVAN 241
              I +P              D+ L     ++GG          Y W K + V D     
Sbjct: 93  IVNITEPQHFYVSSQ-----TDVELHATVKFSGGKTPADNYELHYSWSKGEDVID----- 142

Query: 242 LIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISES---VQLAFGFIGEF 298
                       +  ++ I +    +  G Y  K   +     + +   + LA   + + 
Sbjct: 143 ------------TTQDITIQEF-TADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQD 189

Query: 299 NLKRAP-EIGNQ---NWGKAMFCD-----PPTNYPGVNYYWARD--YFPNFV-----EED 342
            ++     +GN+   N+  +          P      N+Y  R+    P  +     E  
Sbjct: 190 VVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEAL 249

Query: 343 KRVFVSYDGALYFSALEQIDAGNYSC 368
           +   ++ DG L+  +    D   + C
Sbjct: 250 EGFSITPDGHLFKESATYDDTAKFWC 275

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 77.1 bits (190), Expect = 3e-17
 Identities = 29/107 (27%), Positives = 40/107 (37%), Gaps = 17/107 (15%)

Query: 678 KTFPEAPK-----------AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-----YFEN 721
                AP             GD V+LEC     P P   W R    +  N      Y +N
Sbjct: 10  HEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDN 69

Query: 722 FNRI-LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIP 767
             R+ L I +V  +D G Y   A N+      +  + + A PN T+P
Sbjct: 70  TGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQTLP 116

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 61.3 bits (149), Expect = 1e-11
 Identities = 19/101 (18%), Positives = 30/101 (29%), Gaps = 18/101 (17%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           P FI +P               + L C     P P   W + +         ++   +D+
Sbjct: 16  PMFIYKPQSKKVLEGD-----SVKLECQISAIPPPKLFWKRNN--------EMVQFNTDR 62

Query: 250 RFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGSIISE 286
                       L+I D    +D G Y   A N+ G     
Sbjct: 63  ISLYQDNTGRVTLLIKDV-NKKDAGWYTVSAVNEAGVTTCN 102

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 61.3 bits (149), Expect = 1e-11
 Identities = 19/101 (18%), Positives = 30/101 (29%), Gaps = 18/101 (17%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
           P FI +P               + L C     P P   W + +         ++   +D+
Sbjct: 16  PMFIYKPQSKKVLEGD-----SVKLECQISAIPPPKLFWKRNN--------EMVQFNTDR 62

Query: 523 RFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGSIISE 559
                       L+I D    +D G Y   A N+ G     
Sbjct: 63  ISLYQDNTGRVTLLIKDV-NKKDAGWYTVSAVNEAGVTTCN 102

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 38.9 bits (91), Expect = 9e-04
 Identities = 19/72 (26%), Positives = 24/72 (33%), Gaps = 17/72 (23%)

Query: 405 KTFPEAPK-----------AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-----YFEN 448
                AP             GD V+LEC     P P   W R    +  N      Y +N
Sbjct: 10  HEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDN 69

Query: 449 FNRI-LTIPNVK 459
             R+ L I +V 
Sbjct: 70  TGRVTLLIKDVN 81

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 77.1 bits (190), Expect = 4e-17
 Identities = 26/98 (26%), Positives = 37/98 (37%), Gaps = 7/98 (7%)

Query: 677 PKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPL-PRNAYFENF-NRILTIP 729
           P    + P            L CVA G PVP+  W + G  +  +++  +   N +L I 
Sbjct: 8   PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIR 67

Query: 730 NVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIP 767
             K+ D G Y C AS        S  I +Q       P
Sbjct: 68  YAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQP 105

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 68.6 bits (168), Expect = 3e-14
 Identities = 24/101 (23%), Positives = 35/101 (34%), Gaps = 15/101 (14%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           P   + P +    +          LSC A G P P+  W K+          L+     +
Sbjct: 9   PVIRQGPVNQTVAVDG-----TFVLSCVATGSPVPTILWRKDG--------VLVSTQDSR 55

Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
              L  G L I    ++ D G Y C AS   G   + S  +
Sbjct: 56  IKQLENGVLQIRY-AKLGDTGRYTCIASTPSGE-ATWSAYI 94

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 68.6 bits (168), Expect = 3e-14
 Identities = 24/101 (23%), Positives = 35/101 (34%), Gaps = 15/101 (14%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
           P   + P +    +          LSC A G P P+  W K+          L+     +
Sbjct: 9   PVIRQGPVNQTVAVDG-----TFVLSCVATGSPVPTILWRKDG--------VLVSTQDSR 55

Query: 523 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
              L  G L I    ++ D G Y C AS   G   + S  +
Sbjct: 56  IKQLENGVLQIRY-AKLGDTGRYTCIASTPSGE-ATWSAYI 94

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 9/70 (12%)

Query: 404 PKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPL-PRNAYFENF-NRILTIP 456
           P    + P            L CVA G PVP+  W + G  +  +++  +   N +L I 
Sbjct: 8   PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIR 67

Query: 457 NVKMR--GPY 464
             K+   G Y
Sbjct: 68  YAKLGDTGRY 77

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 75.9 bits (187), Expect = 6e-17
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 4/79 (5%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYI 740
             G+  R  C   G PVP+  W R+G  L  +A        +     I +V+  D+G Y 
Sbjct: 27  YEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYS 86

Query: 741 CRASNDRSALESSVTISIQ 759
               N     E+  T++IQ
Sbjct: 87  VVVENSEGKQEAEFTLTIQ 105

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 61.6 bits (150), Expect = 8e-12
 Identities = 16/103 (15%), Positives = 30/103 (29%), Gaps = 17/103 (16%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
              + +P  +     +         SC   G P P+  W ++          ++   +  
Sbjct: 15  ARILTKPRSMTVYEGE-----SARFSCDTDGEPVPTVTWLRKG--------QVLSTSARH 61

Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
           + T +       I+   Q  D G+Y     N  G        L
Sbjct: 62  QVTTTKYKSTFEISSV-QASDEGNYSVVVENSEGK-QEAEFTL 102

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 61.6 bits (150), Expect = 8e-12
 Identities = 16/103 (15%), Positives = 30/103 (29%), Gaps = 17/103 (16%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
              + +P  +     +         SC   G P P+  W ++          ++   +  
Sbjct: 15  ARILTKPRSMTVYEGE-----SARFSCDTDGEPVPTVTWLRKG--------QVLSTSARH 61

Query: 523 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
           + T +       I+   Q  D G+Y     N  G        L
Sbjct: 62  QVTTTKYKSTFEISSV-QASDEGNYSVVVENSEGK-QEAEFTL 102

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 6/59 (10%)

Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKM--RGPY 464
             G+  R  C   G PVP+  W R+G  L  +A        +     I +V+    G Y
Sbjct: 27  YEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNY 85

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 75.1 bits (185), Expect = 2e-16
 Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 3/81 (3%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAY---FENFNRILTIPNVKVEDQGEYIC 741
           K G+++ L     G P P   WT+ G+PL  +       +F+ +  +      D GEY  
Sbjct: 37  KVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYEL 96

Query: 742 RASNDRSALESSVTISIQAEP 762
               +     +++ I +  + 
Sbjct: 97  SVQIENMKDTATIRIRVVEKA 117

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 53.2 bits (128), Expect = 9e-09
 Identities = 12/78 (15%), Positives = 16/78 (20%), Gaps = 16/78 (20%)

Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS----GGNLIINDPRQ 265
             + L     G P P   W K              PL   R  +          +     
Sbjct: 40  EQLNLVVPFQGKPRPQVVWTKGG-----------APLDTSRVHVRTSDFDTVFFVRQA-A 87

Query: 266 VEDRGSYHCKASNKFGSI 283
             D G Y      +    
Sbjct: 88  RSDSGEYELSVQIENMKD 105

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 53.2 bits (128), Expect = 9e-09
 Identities = 12/78 (15%), Positives = 16/78 (20%), Gaps = 16/78 (20%)

Query: 483 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS----GGNLIINDPRQ 538
             + L     G P P   W K              PL   R  +          +     
Sbjct: 40  EQLNLVVPFQGKPRPQVVWTKGG-----------APLDTSRVHVRTSDFDTVFFVRQA-A 87

Query: 539 VEDRGSYHCKASNKFGSI 556
             D G Y      +    
Sbjct: 88  RSDSGEYELSVQIENMKD 105

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 50.5 bits (121), Expect = 8e-08
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAY---FENFNRILTIPNVKM--RGPYFI 466
           K G+++ L     G P P   WT+ G+PL  +       +F+ +  +        G Y +
Sbjct: 37  KVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYEL 96

Query: 467 K 467
            
Sbjct: 97  S 97

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 77.2 bits (190), Expect = 2e-16
 Identities = 19/130 (14%), Positives = 41/130 (31%), Gaps = 18/130 (13%)

Query: 687 GDKVRLECVAF--GYPVPSYNWTRRGSP-------------LPRNAYFENFNRILTIPNV 731
           G  + L+  +F     +    W +                   ++ Y    N  L I ++
Sbjct: 14  GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHL 73

Query: 732 KVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDV 791
           K +DQ  Y     + +          ++ +   + P          + T TCE     D 
Sbjct: 74  KTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISW---TCINTTLTCEVMNGTDP 130

Query: 792 TYSWFRNGEL 801
             + +++G+ 
Sbjct: 131 ELNLYQDGKH 140

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 76.1 bits (187), Expect = 4e-16
 Identities = 22/150 (14%), Positives = 39/150 (26%), Gaps = 21/150 (14%)

Query: 612 VEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLK 671
            +E     +  +G L    L+  D   Y  ++            F  LK+          
Sbjct: 54  FKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFD-LKIQE-------- 104

Query: 672 FPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNV 731
                  + P+         L C       P  N  + G  L         ++ +     
Sbjct: 105 -----RVSKPKISWTCINTTLTCEVMNGTDPELNLYQDGKHLK-------LSQRVITHKW 152

Query: 732 KVEDQGEYICRASNDRSALESSVTISIQAE 761
                 ++ C A N  S   S   +S   +
Sbjct: 153 TTSLSAKFKCTAGNKVSKESSVEPVSCPEK 182

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 59.9 bits (145), Expect = 2e-10
 Identities = 28/175 (16%), Positives = 49/175 (28%), Gaps = 51/175 (29%)

Query: 414 GDKVRLECVAF--GYPVPSYNWTRRGSP-------------LPRNAYFENFNRILTIPNV 458
           G  + L+  +F     +    W +                   ++ Y    N  L I ++
Sbjct: 14  GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHL 73

Query: 459 KM--RGPYFI-------KQPTDVVFDL------SKRSIL---NDITLSCYAGGYPNPSYE 500
           K   +  Y +       K   + +FDL      SK  I     + TL+C      +P   
Sbjct: 74  KTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTTLTCEVMNGTDPELN 133

Query: 501 WFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGS 555
            +++              L      LS   +             + C A NK   
Sbjct: 134 LYQDG-----------KHLK-----LSQRVITHKWTT--SLSAKFKCTAGNKVSK 170

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 59.1 bits (143), Expect = 3e-10
 Identities = 25/176 (14%), Positives = 43/176 (24%), Gaps = 31/176 (17%)

Query: 210 NDITLSC--YAGGYPNPSYEWFKED---YVQDRLVANLIDPLSDKRFTLSGGNLIINDPR 264
            DI L    +         +W K      +             D       G L I   +
Sbjct: 15  QDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLK 74

Query: 265 QVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK-----RAPEIGNQNWGKAMFCDP 319
             +D+  Y     +  G  + E           F+LK       P+I        + C+ 
Sbjct: 75  T-DDQDIYKVSIYDTKGKNVLE---------KIFDLKIQERVSKPKISWTCINTTLTCE- 123

Query: 320 PTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVS 375
             N         +D             +     +         +  + C   +KVS
Sbjct: 124 VMNGTDPELNLYQDGKH----------LKLSQRVITHKWTTSLSAKFKCTAGNKVS 169

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 59.1 bits (143), Expect = 3e-10
 Identities = 25/176 (14%), Positives = 43/176 (24%), Gaps = 31/176 (17%)

Query: 483 NDITLSC--YAGGYPNPSYEWFKED---YVQDRLVANLIDPLSDKRFTLSGGNLIINDPR 537
            DI L    +         +W K      +             D       G L I   +
Sbjct: 15  QDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLK 74

Query: 538 QVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK-----RAPEIGNQNWGKAMFCDP 592
             +D+  Y     +  G  + E           F+LK       P+I        + C+ 
Sbjct: 75  T-DDQDIYKVSIYDTKGKNVLE---------KIFDLKIQERVSKPKISWTCINTTLTCE- 123

Query: 593 PTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVS 648
             N         +D             +     +         +  + C   +KVS
Sbjct: 124 VMNGTDPELNLYQDGKH----------LKLSQRVITHKWTTSLSAKFKCTAGNKVS 169

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 56.4 bits (136), Expect = 3e-09
 Identities = 18/127 (14%), Positives = 33/127 (25%), Gaps = 21/127 (16%)

Query: 339 VEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLK 398
            +E     +  +G L    L+  D   Y  ++            F  LK+          
Sbjct: 54  FKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFD-LKIQE-------- 104

Query: 399 FPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIP-N 457
                  + P+         L C       P  N  + G  L  +       R++T    
Sbjct: 105 -----RVSKPKISWTCINTTLTCEVMNGTDPELNLYQDGKHLKLS------QRVITHKWT 153

Query: 458 VKMRGPY 464
             +   +
Sbjct: 154 TSLSAKF 160

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 46.4 bits (110), Expect = 8e-06
 Identities = 11/73 (15%), Positives = 19/73 (26%), Gaps = 18/73 (24%)

Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269
            + TL+C      +P    +++              L      LS   +           
Sbjct: 116 INTTLTCEVMNGTDPELNLYQDG-----------KHLK-----LSQRVITHKWTT--SLS 157

Query: 270 GSYHCKASNKFGS 282
             + C A NK   
Sbjct: 158 AKFKCTAGNKVSK 170

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 77.0 bits (189), Expect = 3e-16
 Identities = 14/110 (12%), Positives = 31/110 (28%), Gaps = 10/110 (9%)

Query: 690 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSA 749
           +  + +   +P   +    R +              L +    +   G Y+CR     + 
Sbjct: 43  MHHDVIFIEWPFRGFFDIHRSAN----------TFFLVVTAANISHDGNYLCRMKLGETE 92

Query: 750 LESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNG 799
           +     +S+      ++        + + LT TC     P     W    
Sbjct: 93  VTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPE 142

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 70.1 bits (171), Expect = 8e-14
 Identities = 20/143 (13%), Positives = 33/143 (23%), Gaps = 37/143 (25%)

Query: 621 SYDGALYFSALEQIDAGNYSC---NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFP 677
           +    L  +A      GNY C     +++V+          L V               P
Sbjct: 64  ANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEH------LSVVK-------------P 104

Query: 678 KTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFN--------- 723
            T     +         + + C    +P P   W       P      N           
Sbjct: 105 LTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAP-TAANGGVMKEKDGSL 163

Query: 724 RILTIPNVKVEDQGEYICRASND 746
            +    ++         C   ND
Sbjct: 164 SVAVDLSLPKPWHLPVTCVGKND 186

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 61.2 bits (148), Expect = 9e-11
 Identities = 16/169 (9%), Positives = 37/169 (21%), Gaps = 50/169 (29%)

Query: 417 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKM--RGPY---------- 464
           +  + +   +P   +    R +              L +    +   G Y          
Sbjct: 43  MHHDVIFIEWPFRGFFDIHRSAN----------TFFLVVTAANISHDGNYLCRMKLGETE 92

Query: 465 --------------FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDR 510
                                  F        + +T++C    +P+P  +W   + V   
Sbjct: 93  VTKQEHLSVVKPLTLSVHSERSQFPDF-----SVLTVTCTVNAFPHPHVQWLMPEGV--- 144

Query: 511 LVANLIDPLSDKRFTLSG-GNLIINDPRQV--EDRGSYHCKASNKFGSI 556
                    ++        G+L +     +         C   N     
Sbjct: 145 ---EPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEA 190

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 58.5 bits (141), Expect = 7e-10
 Identities = 11/97 (11%), Positives = 24/97 (24%), Gaps = 14/97 (14%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
                      F        + +T++C    +P+P  +W   + V            ++ 
Sbjct: 105 LTLSVHSERSQFPDF-----SVLTVTCTVNAFPHPHVQWLMPEGV------EPAPTAANG 153

Query: 250 RFTLSG-GNLIINDPRQV--EDRGSYHCKASNKFGSI 283
                  G+L +     +         C   N     
Sbjct: 154 GVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEA 190

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 51.6 bits (123), Expect = 2e-07
 Identities = 27/183 (14%), Positives = 54/183 (29%), Gaps = 32/183 (17%)

Query: 210 NDITLSCYA---GGYPNPSYEWFKEDYVQDRLVANLI--------DPLS---DKRFTLSG 255
             +TL+ Y       P     WFK    +++++   +         P     D   + + 
Sbjct: 7   ERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANT 66

Query: 256 GNLIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKRAPEIGNQNWG 312
             L++     +   G+Y C+       +  +   SV             + P+  +    
Sbjct: 67  FFLVVTAA-NISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPD-FSV--- 121

Query: 313 KAMFC----DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALY---FSALEQIDAGN 365
             + C     P    P V +       P     +  V    DG+L      +L +     
Sbjct: 122 LTVTCTVNAFPH---PHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLP 178

Query: 366 YSC 368
            +C
Sbjct: 179 VTC 181

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 51.6 bits (123), Expect = 2e-07
 Identities = 27/183 (14%), Positives = 54/183 (29%), Gaps = 32/183 (17%)

Query: 483 NDITLSCYA---GGYPNPSYEWFKEDYVQDRLVANLI--------DPLS---DKRFTLSG 528
             +TL+ Y       P     WFK    +++++   +         P     D   + + 
Sbjct: 7   ERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANT 66

Query: 529 GNLIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKRAPEIGNQNWG 585
             L++     +   G+Y C+       +  +   SV             + P+  +    
Sbjct: 67  FFLVVTAA-NISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPD-FSV--- 121

Query: 586 KAMFC----DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALY---FSALEQIDAGN 638
             + C     P    P V +       P     +  V    DG+L      +L +     
Sbjct: 122 LTVTCTVNAFPH---PHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLP 178

Query: 639 YSC 641
            +C
Sbjct: 179 VTC 181

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 50.0 bits (119), Expect = 6e-07
 Identities = 16/106 (15%), Positives = 26/106 (24%), Gaps = 27/106 (25%)

Query: 348 SYDGALYFSALEQIDAGNYSC---NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFP 404
           +    L  +A      GNY C     +++V+          L V               P
Sbjct: 64  ANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEH------LSVVK-------------P 104

Query: 405 KTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAY 445
            T     +         + + C    +P P   W       P    
Sbjct: 105 LTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTA 150

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 73.1 bits (180), Expect = 5e-16
 Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 1/75 (1%)

Query: 686 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-ENFNRILTIPNVKVEDQGEYICRAS 744
            G    L+C   G PVP   W   G P+       E     L I +   ED G Y C A 
Sbjct: 25  EGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAE 84

Query: 745 NDRSALESSVTISIQ 759
           N    +  S  +++ 
Sbjct: 85  NALGQVSCSAWVTVH 99

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 67.7 bits (166), Expect = 4e-14
 Identities = 26/105 (24%), Positives = 31/105 (29%), Gaps = 22/105 (20%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           P F     D      +     D  L C   G P P   W                P+   
Sbjct: 12  PSFSSVLKDCAVIEGQ-----DFVLQCSVRGTPVPRITWLLNG-----------QPIQYA 55

Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISE---SVQ 289
           R T   G   L I D    ED G+Y C A N  G +      +V 
Sbjct: 56  RSTCEAGVAELHIQDALP-EDHGTYTCLAENALGQVSCSAWVTVH 99

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 67.7 bits (166), Expect = 4e-14
 Identities = 26/105 (24%), Positives = 31/105 (29%), Gaps = 22/105 (20%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
           P F     D      +     D  L C   G P P   W                P+   
Sbjct: 12  PSFSSVLKDCAVIEGQ-----DFVLQCSVRGTPVPRITWLLNG-----------QPIQYA 55

Query: 523 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISE---SVQ 562
           R T   G   L I D    ED G+Y C A N  G +      +V 
Sbjct: 56  RSTCEAGVAELHIQDALP-EDHGTYTCLAENALGQVSCSAWVTVH 99

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 13/49 (26%), Positives = 21/49 (42%)

Query: 752 SSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
           SS +  ++  P+F+  L D  +    D    C   G P    +W  NG+
Sbjct: 2   SSGSSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQ 50

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 44.2 bits (105), Expect = 8e-06
 Identities = 13/47 (27%), Positives = 16/47 (34%), Gaps = 1/47 (2%)

Query: 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-ENFNRILTIPNV 458
            G    L+C   G PVP   W   G P+       E     L I + 
Sbjct: 25  EGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDA 71

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 74.7 bits (183), Expect = 5e-16
 Identities = 28/126 (22%), Positives = 40/126 (31%), Gaps = 23/126 (18%)

Query: 664 HSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRN-- 716
           H +   L    +    F +AP       G  V L C A G PVP   W   G        
Sbjct: 8   HHHSSGLVPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICS 67

Query: 717 ---------------AYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ-A 760
                           Y ++    ++I  +  ED G Y CRASND      +    ++  
Sbjct: 68  QLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWV 127

Query: 761 EPNFTI 766
                +
Sbjct: 128 RAQAVV 133

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 67.0 bits (163), Expect = 2e-13
 Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 14/121 (11%)

Query: 443 NAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWF 502
           +++  + +    +P        F++ P      +        + L C A G P P  +W+
Sbjct: 3   SSHHHHHHSSGLVPRGSHM-AGFVQAPLSQQRWVGG-----SVELHCEAVGSPVPEIQWW 56

Query: 503 KEDYVQDRLVANLIDPLSDKRFTLSG-------GNLIINDPRQVEDRGSYHCKASNKFGS 555
            E    + + + L D     R  +           + I+     ED G+Y C+ASN    
Sbjct: 57  FEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTL-VEEDTGTYECRASNDPDR 115

Query: 556 I 556
            
Sbjct: 116 N 116

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 66.6 bits (162), Expect = 3e-13
 Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 13/101 (12%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
             F++ P      +        + L C A G P P  +W+ E    + + + L D     
Sbjct: 22  AGFVQAPLSQQRWVGG-----SVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLD 76

Query: 250 RFTLSG-------GNLIINDPRQVEDRGSYHCKASNKFGSI 283
           R  +           + I+     ED G+Y C+ASN     
Sbjct: 77  RVHIHATYHQHAASTISIDTL-VEEDTGTYECRASNDPDRN 116

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 43.9 bits (103), Expect = 3e-05
 Identities = 20/98 (20%), Positives = 28/98 (28%), Gaps = 24/98 (24%)

Query: 391 HSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRN-- 443
           H +   L    +    F +AP       G  V L C A G PVP   W   G        
Sbjct: 8   HHHSSGLVPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICS 67

Query: 444 ---------------AYFENFNRILTIPNVKMR--GPY 464
                           Y ++    ++I  +     G Y
Sbjct: 68  QLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTY 105

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 72.7 bits (179), Expect = 7e-16
 Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 4/79 (5%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYI 740
           KAG    LE    G P P+  WT   S            ++    +  P+ K  D G Y 
Sbjct: 15  KAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYK 74

Query: 741 CRASNDRSALESSVTISIQ 759
            +  N+    E+   + +Q
Sbjct: 75  LKVKNELGEDEAIFEVIVQ 93

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 53.1 bits (128), Expect = 5e-09
 Identities = 13/103 (12%), Positives = 25/103 (24%), Gaps = 17/103 (16%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           P  +     +              L     G P+P+  W   D        +      + 
Sbjct: 3   PKILTASRKIKIKAGF-----THNLEVDFIGAPDPTATWTVGD--------SGAALAPEL 49

Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
                     +      +  D G+Y  K  N+ G       ++
Sbjct: 50  LVDAKSSTTSIFFPSA-KRADSGNYKLKVKNELGE-DEAIFEV 90

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 53.1 bits (128), Expect = 5e-09
 Identities = 13/103 (12%), Positives = 25/103 (24%), Gaps = 17/103 (16%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
           P  +     +              L     G P+P+  W   D        +      + 
Sbjct: 3   PKILTASRKIKIKAGF-----THNLEVDFIGAPDPTATWTVGD--------SGAALAPEL 49

Query: 523 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
                     +      +  D G+Y  K  N+ G       ++
Sbjct: 50  LVDAKSSTTSIFFPSA-KRADSGNYKLKVKNELGE-DEAIFEV 90

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 6/62 (9%)

Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKM--RGPYF 465
           KAG    LE    G P P+  WT   S            ++    +  P+ K    G Y 
Sbjct: 15  KAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYK 74

Query: 466 IK 467
           +K
Sbjct: 75  LK 76

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 72.8 bits (179), Expect = 8e-16
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 7/91 (7%)

Query: 677 PKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA--YFENFNRILTIP 729
           P    + P            L+C A G P+P  +W + G   P             L I 
Sbjct: 8   PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIK 67

Query: 730 NVKVEDQGEYICRASNDRSALESSVTISIQA 760
           N+++ D G Y C A++       S  + +  
Sbjct: 68  NLRISDTGTYTCVATSSSGETSWSAVLDVTE 98

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 66.6 bits (163), Expect = 1e-13
 Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 15/101 (14%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           P  ++ P +    +          L C A G P P   W KE                 +
Sbjct: 9   PIILQGPANQTLAVDG-----TALLKCKATGDPLPVISWLKEG--------FTFPGRDPR 55

Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
                 G L I +  ++ D G+Y C A++  G   S S  L
Sbjct: 56  ATIQEQGTLQIKNL-RISDTGTYTCVATSSSGE-TSWSAVL 94

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 66.6 bits (163), Expect = 1e-13
 Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 15/101 (14%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
           P  ++ P +    +          L C A G P P   W KE                 +
Sbjct: 9   PIILQGPANQTLAVDG-----TALLKCKATGDPLPVISWLKEG--------FTFPGRDPR 55

Query: 523 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
                 G L I +  ++ D G+Y C A++  G   S S  L
Sbjct: 56  ATIQEQGTLQIKNL-RISDTGTYTCVATSSSGE-TSWSAVL 94

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 9/70 (12%)

Query: 404 PKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA--YFENFNRILTIP 456
           P    + P            L+C A G P+P  +W + G   P             L I 
Sbjct: 8   PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIK 67

Query: 457 NVKMR--GPY 464
           N+++   G Y
Sbjct: 68  NLRISDTGTY 77

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 72.5 bits (177), Expect = 2e-15
 Identities = 20/92 (21%), Positives = 32/92 (34%), Gaps = 14/92 (15%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTR--------------RGSPLPRNAYFENFNRILTIPN 730
             G+K+ L C A        ++                R       +  + F   LTI  
Sbjct: 21  SVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDG 80

Query: 731 VKVEDQGEYICRASNDRSALESSVTISIQAEP 762
           V   DQG Y C AS+     ++S  + +  +P
Sbjct: 81  VTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 112

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 51.3 bits (122), Expect = 5e-08
 Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 6/83 (7%)

Query: 212 ITLSCYAGGYPNPSYEWFKE----DYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 267
           + L+C A    N   ++  E     +   +LV   +   S          L I+      
Sbjct: 26  LVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGV-TRS 84

Query: 268 DRGSYHCKASNKFGSIISESVQL 290
           D+G Y C AS+   +    S  +
Sbjct: 85  DQGLYTCAASSGLMT-KKNSTFV 106

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 51.3 bits (122), Expect = 5e-08
 Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 6/83 (7%)

Query: 485 ITLSCYAGGYPNPSYEWFKE----DYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 540
           + L+C A    N   ++  E     +   +LV   +   S          L I+      
Sbjct: 26  LVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGV-TRS 84

Query: 541 DRGSYHCKASNKFGSIISESVQL 563
           D+G Y C AS+   +    S  +
Sbjct: 85  DQGLYTCAASSGLMT-KKNSTFV 106

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 13/69 (18%), Positives = 20/69 (28%), Gaps = 16/69 (23%)

Query: 412 KAGDKVRLECVAFGYPVPSYNWTR--------------RGSPLPRNAYFENFNRILTIPN 457
             G+K+ L C A        ++                R       +  + F   LTI  
Sbjct: 21  SVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDG 80

Query: 458 VKM--RGPY 464
           V    +G Y
Sbjct: 81  VTRSDQGLY 89

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 71.5 bits (176), Expect = 2e-15
 Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 4/80 (5%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYI 740
            +    +    A G P P+  WT+ G  + +   +    +     L I      D G Y 
Sbjct: 19  SSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYT 78

Query: 741 CRASNDRSALESSVTISIQA 760
           C   N   ++ SS  ++I+A
Sbjct: 79  CTVKNSAGSVSSSCKLTIKA 98

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 60.4 bits (147), Expect = 1e-11
 Identities = 20/99 (20%), Positives = 28/99 (28%), Gaps = 16/99 (16%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           P  +    D                +  A G P P+  W K+           I      
Sbjct: 7   PVIVTGLQDTTVSSDS-----VAKFAVKATGEPRPTAIWTKDG--------KAITQGGKY 53

Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISE 286
           + +   G   L I+      D G Y C   N  GS+ S 
Sbjct: 54  KLSEDKGGFFLEIHKT-DTSDSGLYTCTVKNSAGSVSSS 91

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 60.4 bits (147), Expect = 1e-11
 Identities = 20/99 (20%), Positives = 28/99 (28%), Gaps = 16/99 (16%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
           P  +    D                +  A G P P+  W K+           I      
Sbjct: 7   PVIVTGLQDTTVSSDS-----VAKFAVKATGEPRPTAIWTKDG--------KAITQGGKY 53

Query: 523 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISE 559
           + +   G   L I+      D G Y C   N  GS+ S 
Sbjct: 54  KLSEDKGGFFLEIHKT-DTSDSGLYTCTVKNSAGSVSSS 91

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 4/52 (7%)

Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVK 459
            +    +    A G P P+  WT+ G  + +   +    +     L I    
Sbjct: 19  SSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTD 70

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 10/43 (23%), Positives = 20/43 (46%)

Query: 758 IQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
           I ++P     L D  + + +   +  +A G P  T  W ++G+
Sbjct: 3   ISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGK 45

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 71.3 bits (175), Expect = 3e-15
 Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 13/104 (12%)

Query: 671 KFPNNFPK-TFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE--------- 720
            F    P  TF E+P +     +     G P P+  W   G+ L  + Y           
Sbjct: 2   HFA---PTITFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHT 58

Query: 721 NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNF 764
            ++  L + N    + G+Y   A N+    E  ++      P  
Sbjct: 59  EYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGI 102

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 56.7 bits (137), Expect = 4e-10
 Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 7/85 (8%)

Query: 210 NDITLSCYAGGYPNPSYEWFKEDYV--QDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 267
           +   +     G P P+ +WF    +  + + +   I   +    T   G L +++P    
Sbjct: 17  HHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNH---TEYHGCLQLDNPTH-M 72

Query: 268 DRGSYHCKASNKFGSIISESVQLAF 292
           + G Y   A N++G    + +   F
Sbjct: 73  NNGDYTLIAKNEYGK-DEKQISAHF 96

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 56.7 bits (137), Expect = 4e-10
 Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 7/85 (8%)

Query: 483 NDITLSCYAGGYPNPSYEWFKEDYV--QDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 540
           +   +     G P P+ +WF    +  + + +   I   +    T   G L +++P    
Sbjct: 17  HHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNH---TEYHGCLQLDNPTH-M 72

Query: 541 DRGSYHCKASNKFGSIISESVQLAF 565
           + G Y   A N++G    + +   F
Sbjct: 73  NNGDYTLIAKNEYGK-DEKQISAHF 96

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 15/79 (18%)

Query: 398 KFPNNFPK-TFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE--------- 447
            F    P  TF E+P +     +     G P P+  W   G+ L  + Y           
Sbjct: 2   HFA---PTITFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHT 58

Query: 448 NFNRILTIPNVKM--RGPY 464
            ++  L + N      G Y
Sbjct: 59  EYHGCLQLDNPTHMNNGDY 77

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 74.4 bits (182), Expect = 3e-15
 Identities = 26/186 (13%), Positives = 45/186 (24%), Gaps = 32/186 (17%)

Query: 597 PGVNYYWARDYFPNFVEEDKRVFVSYDG-ALYFSALEQIDAGNYSCNVQSKVSDTGRNGP 655
             +N      Y       D               +     AG   C  +           
Sbjct: 36  SNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKIND-------- 87

Query: 656 FFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA-----GDKVRLECVAFGYPVPSYNWT--- 707
               + +    +  +                     G+K+ L C A        ++    
Sbjct: 88  ----ESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEY 143

Query: 708 -----------RRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI 756
                       R       +  + F   LTI  V   DQG Y C AS+     ++S  +
Sbjct: 144 PSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFV 203

Query: 757 SIQAEP 762
            +  +P
Sbjct: 204 RVHEDP 209

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 59.8 bits (144), Expect = 3e-10
 Identities = 16/143 (11%), Positives = 40/143 (27%), Gaps = 15/143 (10%)

Query: 670 LKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWT-----RRGSPLPRNAYFENFNR 724
           +   ++              V + C+     + + N +          +P        ++
Sbjct: 7   IASVSDQHGVVYITENKNKTVVIPCLG---SISNLNVSLCARYPEKRFVPDGNRISWDSK 63

Query: 725 I-LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQA----DL 779
              TIP+  +   G   C A  +  + +S + I +         +       +      L
Sbjct: 64  KGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKL 123

Query: 780 TWTCEAFGVPD--VTYSWFRNGE 800
              C A    +  + ++W     
Sbjct: 124 VLNCTARTELNVGIDFNWEYPSS 146

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 56.3 bits (135), Expect = 5e-09
 Identities = 30/202 (14%), Positives = 57/202 (28%), Gaps = 40/202 (19%)

Query: 397 LKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWT-----RRGSPLPRNAYFENFNR 451
           +   ++              V + C+     + + N +          +P        ++
Sbjct: 7   IASVSDQHGVVYITENKNKTVVIPCLG---SISNLNVSLCARYPEKRFVPDGNRISWDSK 63

Query: 452 I-LTIPNVKMR--GPYF--------------------IKQPTDVVFDLSKRSILN---DI 485
              TIP+  +   G  F                      +  DVV   S    L+    +
Sbjct: 64  KGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKL 123

Query: 486 TLSCYAGGYPNPSYEWF----KEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 541
            L+C A    N   ++        +   +LV   +   S          L I+      D
Sbjct: 124 VLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGV-TRSD 182

Query: 542 RGSYHCKASNKFGSIISESVQL 563
           +G Y C AS+   +    S  +
Sbjct: 183 QGLYTCAASSGLMT-KKNSTFV 203

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 54.8 bits (131), Expect = 1e-08
 Identities = 26/156 (16%), Positives = 45/156 (28%), Gaps = 21/156 (13%)

Query: 141 RWGF--ERVTGMEPLLFICEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQPTD 198
           + GF           +  CEA          +D +YQ  M I            +     
Sbjct: 63  KKGFTIPSYMISYAGMVFCEAK--------INDESYQSIMYIVVVVGYRIYDVVLSPSHG 114

Query: 199 VVFDLSKRSILNDITLSCYAGGYPNPSYEWF----KEDYVQDRLVANLIDPLSDKRFTLS 254
           +   +        + L+C A    N   ++        +   +LV   +   S       
Sbjct: 115 IELSVG-----EKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKF 169

Query: 255 GGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
              L I+      D+G Y C AS+   +    S  +
Sbjct: 170 LSTLTIDGV-TRSDQGLYTCAASSGLMT-KKNSTFV 203

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 47.5 bits (112), Expect = 4e-06
 Identities = 20/177 (11%), Positives = 45/177 (25%), Gaps = 21/177 (11%)

Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
            + + C      N +                        R +             +   G
Sbjct: 26  TVVIPCLGSI-SNLNVSLCARY-------PEKRFVPDGNRISWDSKKGFTIPSYMISYAG 77

Query: 271 SYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQ-NWGKA--MFC----DPPTN- 322
              C+A     S  S    +       +++  +P  G + + G+   + C    +     
Sbjct: 78  MVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGI 137

Query: 323 -----YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 374
                YP   +   +    +   +       +   L    + + D G Y+C   S +
Sbjct: 138 DFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL 194

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 47.5 bits (112), Expect = 4e-06
 Identities = 20/177 (11%), Positives = 45/177 (25%), Gaps = 21/177 (11%)

Query: 484 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 543
            + + C      N +                        R +             +   G
Sbjct: 26  TVVIPCLGSI-SNLNVSLCARY-------PEKRFVPDGNRISWDSKKGFTIPSYMISYAG 77

Query: 544 SYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQ-NWGKA--MFC----DPPTN- 595
              C+A     S  S    +       +++  +P  G + + G+   + C    +     
Sbjct: 78  MVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGI 137

Query: 596 -----YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 647
                YP   +   +    +   +       +   L    + + D G Y+C   S +
Sbjct: 138 DFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL 194

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 70.9 bits (174), Expect = 3e-15
 Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 686 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-----YFENFNRILTIPNVKVEDQGEYI 740
           A + V+  C A G P+P+  W + G    +          N +  L + +V   D+G Y 
Sbjct: 22  AANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYT 81

Query: 741 CRASNDRSALESSVTISI 758
           C   N+  ++  +  + +
Sbjct: 82  CVVENEYGSINHTYHLDV 99

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 59.8 bits (145), Expect = 3e-11
 Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 8/104 (7%)

Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 246
            R PY+           +  +  N +   C AGG P P+  W K               +
Sbjct: 2   KRAPYWTNTEKMEKRLHAVPA-ANTVKFRCPAGGNPMPTMRWLKNG---KEFKQE--HRI 55

Query: 247 SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
              +      +LI+       D+G+Y C   N++GS I+ +  L
Sbjct: 56  GGYKVRNQHWSLIMESV-VPSDKGNYTCVVENEYGS-INHTYHL 97

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 59.0 bits (143), Expect = 5e-11
 Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 8/101 (7%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
           PY+           +  +  N +   C AGG P P+  W K               +   
Sbjct: 5   PYWTNTEKMEKRLHAVPA-ANTVKFRCPAGGNPMPTMRWLKNG---KEFKQE--HRIGGY 58

Query: 523 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
           +      +LI+       D+G+Y C   N++GS I+ +  L
Sbjct: 59  KVRNQHWSLIMESV-VPSDKGNYTCVVENEYGS-INHTYHL 97

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 7/59 (11%)

Query: 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-----YFENFNRILTIPNVKM--RGPY 464
           A + V+  C A G P+P+  W + G    +          N +  L + +V    +G Y
Sbjct: 22  AANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNY 80

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 70.8 bits (174), Expect = 4e-15
 Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 5/80 (6%)

Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQGEYIC 741
           G  V +     G P P  +W R   P+  +        E     L I   +  D G Y C
Sbjct: 20  GQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTC 79

Query: 742 RASNDRSALESSVTISIQAE 761
           +A N+  A +    + ++ E
Sbjct: 80  KAVNEYGARQCEARLEVRGE 99

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 64.2 bits (157), Expect = 7e-13
 Identities = 23/101 (22%), Positives = 33/101 (32%), Gaps = 19/101 (18%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           P F     D      +     D+ +S    G P P   W +            + P   +
Sbjct: 6   PTFKVSLMDQSVREGQ-----DVIMSIRVQGEPKPVVSWLRNR--------QPVRP-DQR 51

Query: 250 RFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGSIISE 286
           RF          L I    +  D G Y CKA N++G+   E
Sbjct: 52  RFAEEAEGGLCRLRILAA-ERGDAGFYTCKAVNEYGARQCE 91

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 64.2 bits (157), Expect = 7e-13
 Identities = 23/101 (22%), Positives = 33/101 (32%), Gaps = 19/101 (18%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
           P F     D      +     D+ +S    G P P   W +            + P   +
Sbjct: 6   PTFKVSLMDQSVREGQ-----DVIMSIRVQGEPKPVVSWLRNR--------QPVRP-DQR 51

Query: 523 RFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGSIISE 559
           RF          L I    +  D G Y CKA N++G+   E
Sbjct: 52  RFAEEAEGGLCRLRILAA-ERGDAGFYTCKAVNEYGARQCE 91

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 41.5 bits (98), Expect = 8e-05
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 759 QAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
           +A P F + L D+ +    D+  +    G P    SW RN +
Sbjct: 3   KAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQ 44

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 11/50 (22%), Positives = 15/50 (30%), Gaps = 5/50 (10%)

Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNV 458
           G  V +     G P P  +W R   P+  +        E     L I   
Sbjct: 20  GQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAA 69

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 71.2 bits (175), Expect = 4e-15
 Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 4/82 (4%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYI 740
           +AG+ V L     G    +  W +    +  + +           LTI   + E  G Y 
Sbjct: 20  RAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYT 79

Query: 741 CRASNDRSALESSVTISIQAEP 762
               N   + ++ V +++  +P
Sbjct: 80  LLVENKLGSRQAQVNLTVVDKP 101

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 53.9 bits (130), Expect = 5e-09
 Identities = 21/95 (22%), Positives = 25/95 (26%), Gaps = 16/95 (16%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           P  I+ P D             + L     G    +  W K            I      
Sbjct: 8   PQIIQFPEDQKVRAG-----ESVELFGKVTGTQPITCTWMKFR--------KQIQESEHM 54

Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 282
           +   S     L I   RQ E  G Y     NK GS
Sbjct: 55  KVENSENGSKLTILAARQ-EHCGCYTLLVENKLGS 88

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 53.9 bits (130), Expect = 5e-09
 Identities = 21/95 (22%), Positives = 25/95 (26%), Gaps = 16/95 (16%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
           P  I+ P D             + L     G    +  W K            I      
Sbjct: 8   PQIIQFPEDQKVRAG-----ESVELFGKVTGTQPITCTWMKFR--------KQIQESEHM 54

Query: 523 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 555
           +   S     L I   RQ E  G Y     NK GS
Sbjct: 55  KVENSENGSKLTILAARQ-EHCGCYTLLVENKLGS 88

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 6/62 (9%)

Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKMR--GPYF 465
           +AG+ V L     G    +  W +    +  + +           LTI   +    G Y 
Sbjct: 20  RAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYT 79

Query: 466 IK 467
           + 
Sbjct: 80  LL 81

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 70.9 bits (174), Expect = 5e-15
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 5/82 (6%)

Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQGEYIC 741
           G   R++C   G P P  +W   G P+  ++       EN    L I  V   D G Y C
Sbjct: 24  GKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTC 83

Query: 742 RASNDRSALESSVTISIQAEPN 763
            A+N       S+ + + A+ +
Sbjct: 84  IATNRAGQNSFSLELVVAAKES 105

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 62.0 bits (151), Expect = 6e-12
 Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 18/104 (17%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           P+F++ P D+     K        + C   G P P   W  +           + P S  
Sbjct: 10  PHFLQAPGDLTVQEGK-----LCRMDCKVSGLPTPDLSWQLDG--------KPVRPDSAH 56

Query: 250 RFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
           +  +       LII       D G Y C A+N+ G     S++L
Sbjct: 57  KMLVRENGVHSLIIEPV-TSRDAGIYTCIATNRAGQNSF-SLEL 98

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 62.0 bits (151), Expect = 6e-12
 Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 18/104 (17%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
           P+F++ P D+     K        + C   G P P   W  +           + P S  
Sbjct: 10  PHFLQAPGDLTVQEGK-----LCRMDCKVSGLPTPDLSWQLDG--------KPVRPDSAH 56

Query: 523 RFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
           +  +       LII       D G Y C A+N+ G     S++L
Sbjct: 57  KMLVRENGVHSLIIEPV-TSRDAGIYTCIATNRAGQNSF-SLEL 98

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 42.0 bits (99), Expect = 7e-05
 Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 7/58 (12%)

Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKMR--GPY 464
           G   R++C   G P P  +W   G P+  ++       EN    L I  V  R  G Y
Sbjct: 24  GKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIY 81

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 69.6 bits (171), Expect = 1e-14
 Identities = 18/99 (18%), Positives = 27/99 (27%), Gaps = 15/99 (15%)

Query: 677 PKTFPEAPK-----------AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNR- 724
           P T   AP+            G   R        P     W   G  L  ++     N  
Sbjct: 2   PFTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTS 61

Query: 725 ---ILTIPNVKVEDQGEYICRASNDRSALESSVTISIQA 760
               L I +   +D G Y    +N +       T+ +  
Sbjct: 62  GVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTG 100

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 60.0 bits (146), Expect = 3e-11
 Identities = 15/106 (14%), Positives = 26/106 (24%), Gaps = 16/106 (15%)

Query: 183 PDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANL 242
           P  +   P    +               +          P    +W+             
Sbjct: 2   PFTLDHAPRITLRMRSHRVPCG-----QNTRFILNVQSKPTAEVKWYHNG--------VE 48

Query: 243 IDPLSDKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISE 286
           +   S   +T + G   L I D    +D G+Y    +N  G     
Sbjct: 49  LQESSKIHYTNTSGVLTLEILDCH-TDDSGTYRAVCTNYKGEASDY 93

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 14/99 (14%), Positives = 24/99 (24%), Gaps = 16/99 (16%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
           P    +               +          P    +W+             +   S  
Sbjct: 9   PRITLRMRSHRVPCG-----QNTRFILNVQSKPTAEVKWYHNG--------VELQESSKI 55

Query: 523 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISE 559
            +T + G   L I D    +D G+Y    +N  G     
Sbjct: 56  HYTNTSGVLTLEILDCH-TDDSGTYRAVCTNYKGEASDY 93

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 13/71 (18%), Positives = 17/71 (23%), Gaps = 15/71 (21%)

Query: 404 PKTFPEAPK-----------AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNR- 451
           P T   AP+            G   R        P     W   G  L  ++     N  
Sbjct: 2   PFTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTS 61

Query: 452 ---ILTIPNVK 459
               L I +  
Sbjct: 62  GVLTLEILDCH 72

>3vpp_A C-type lectin domain family 9 member A; dendritic cell, C-type lectin-like domain, membrane, immune; 1.64A {Homo sapiens} Length = 132

 Score = 70.5 bits (173), Expect = 1e-14
 Identities = 30/131 (22%), Positives = 47/131 (35%), Gaps = 11/131 (8%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
           CP +W+Q R+SCY   +      + ++ NC    S L  +   +E  FI   L       
Sbjct: 4   CPNNWIQNRESCYYVSEIW-SIWHTSQENCLKEGSTLLQIESKEEMDFITGSLRKIKGSY 62

Query: 89  RKWYFGGTQQSPN-LWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERV 147
             W  G +Q   +  W+ +DG++ +      LP            Y     +K       
Sbjct: 63  DYW-VGLSQDGHSGRWLWQDGSSPSP---GLLPAERSQSANQVCGY-----VKSNSLLSS 113

Query: 148 TGMEPLLFICE 158
                  FICE
Sbjct: 114 NCDTWKYFICE 124

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 75.2 bits (184), Expect = 1e-14
 Identities = 26/172 (15%), Positives = 45/172 (26%), Gaps = 26/172 (15%)

Query: 602 YWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKV 661
            W            K   +   G    +    ++  N +C  ++ V   GR      + V
Sbjct: 191 GWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDV---GRAEVSVQVNV 247

Query: 662 FPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFEN 721
              ++ Q            P                G P PS  W   GS L   ++   
Sbjct: 248 SFPASVQLHTAVEMHHWCIP------------FSVDGQPAPSLRWLFNGSVLNETSFIFT 295

Query: 722 F-----------NRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEP 762
                       +  L +      + G Y   A+N      +S+  +    P
Sbjct: 296 EFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 347

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 68.2 bits (166), Expect = 2e-12
 Identities = 34/174 (19%), Positives = 49/174 (28%), Gaps = 23/174 (13%)

Query: 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENF--NRILTIPNVKM---RGPY--- 464
            GD V L C   G  +    W                  +  LT+ NV     R      
Sbjct: 172 VGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCW 231

Query: 465 ------------FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLV 512
                        +         L     ++   +     G P PS  W     V +   
Sbjct: 232 AENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETS 291

Query: 513 ANLIDPLSDKRFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAF 565
               + L       +  G L +N P    + G+Y   A+N FG   S S+  AF
Sbjct: 292 FIFTEFLEPAANETVRHGCLRLNQP-THVNNGNYTLLAANPFGQ-ASASIMAAF 343

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 68.2 bits (166), Expect = 2e-12
 Identities = 24/119 (20%), Positives = 35/119 (29%), Gaps = 7/119 (5%)

Query: 686 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENF--NRILTIPNVKVE-DQGEYICR 742
            GD V L C   G  +    W                  +  LT+ NV  + ++    C 
Sbjct: 172 VGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCW 231

Query: 743 ASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGEL 801
           A ND    E SV +      +F   +                  G P  +  W  NG +
Sbjct: 232 AENDVGRAEVSVQV----NVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSV 286

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 67.5 bits (164), Expect = 5e-12
 Identities = 28/232 (12%), Positives = 53/232 (22%), Gaps = 26/232 (11%)

Query: 155 FICEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSIL----N 210
             C  +++ L     +         ++   + P               +   +      +
Sbjct: 115 LHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASVDVGD 174

Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
           D+ L C   G       W   +                K   L    L + +     +R 
Sbjct: 175 DVLLRCQVEGRGLEQAGWILTE--------LEQSATVMKSGGLPSLGLTLANVTSDLNRK 226

Query: 271 SYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYW 330
           +  C A N  G     SVQ+   F                             P  +  W
Sbjct: 227 NVTCWAENDVG-RAEVSVQVNVSF-----PASVQLHTAVEMHHWCIPFSVDGQPAPSLRW 280

Query: 331 ARD--------YFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 374
             +        +      E         G L  +    ++ GNY+    +  
Sbjct: 281 LFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPF 332

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 65.9 bits (160), Expect = 1e-11
 Identities = 37/271 (13%), Positives = 62/271 (22%), Gaps = 42/271 (15%)

Query: 385 PLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA 444
             K     + Q+L    N                L C      +  +     G    +  
Sbjct: 96  SWKTVQGLSLQELVLSGN---------------PLHCSCALRWLQRWEEEGLGGVPEQKL 140

Query: 445 YFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKE 504
                  +  +PN     P    Q  +   D+      +D+ L C   G       W   
Sbjct: 141 QCHGQGPLAHMPNASCGVPTLKVQVPNASVDVG-----DDVLLRCQVEGRGLEQAGWILT 195

Query: 505 DYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLA 564
           +                K   L    L + +     +R +  C A N  G     SVQ+ 
Sbjct: 196 E--------LEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVG-RAEVSVQVN 246

Query: 565 FGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARD--------YFPNFVEEDK 616
             F                             P  +  W  +        +      E  
Sbjct: 247 VSF-----PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPA 301

Query: 617 RVFVSYDGALYFSALEQIDAGNYSCNVQSKV 647
                  G L  +    ++ GNY+    +  
Sbjct: 302 ANETVRHGCLRLNQPTHVNNGNYTLLAANPF 332

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.0 bits (129), Expect = 9e-08
 Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 3/83 (3%)

Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFT-LSGGNLIINDPRQVEDR 269
              +     G P PS  W     V +       + L       +  G L +N P    + 
Sbjct: 263 HWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQP-THVNN 321

Query: 270 GSYHCKASNKFGSIISESVQLAF 292
           G+Y   A+N FG   S S+  AF
Sbjct: 322 GNYTLLAANPFGQ-ASASIMAAF 343

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 73.0 bits (178), Expect = 2e-14
 Identities = 36/215 (16%), Positives = 58/215 (26%), Gaps = 46/215 (21%)

Query: 584 WGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDK-----------RVFVSYDGALYFSALE 632
           W K    D  T     NY W  +       +              V       L  + + 
Sbjct: 39  WLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVH 98

Query: 633 QIDAGNYSCNV--QSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEA--PKAGD 688
             D G Y C V   S  ++ G +     LKV  H+        NN   +  E      G+
Sbjct: 99  PQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTP------SNNVHVSTAEVVQVDEGN 152

Query: 689 KVRLECVAFGYPVPSYNWTRRGSPLP---RNAYFENFNRI-------------------- 725
            + + C        +  W    +         Y    N+                     
Sbjct: 153 DITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGA 212

Query: 726 --LTIPNVKVEDQGEYICRASNDRSALESSVTISI 758
             L I   K+ D G   C  +  +  L++  + +I
Sbjct: 213 RNLVIRAAKITDAGRVWCELATGQGELDADRSSTI 247

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 61.1 bits (147), Expect = 2e-10
 Identities = 23/129 (17%), Positives = 40/129 (31%), Gaps = 22/129 (17%)

Query: 450 NRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQD 509
           + +L +          +     V  D       NDIT++C      N +  W+      +
Sbjct: 124 SVVLKVTGHTPSNNVHVSTAEVVQVDEG-----NDITMTCPCTDCANANVTWYTGPTFFE 178

Query: 510 RLVANLIDPLSDK--------------RFTLSG-GNLIINDPRQVEDRGSYHCKASNKFG 554
                   PL++K              R + SG  NL+I   +   D G   C+ +   G
Sbjct: 179 NYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKI-TDAGRVWCELATGQG 237

Query: 555 SIISESVQL 563
             +      
Sbjct: 238 E-LDADRSS 245

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 60.7 bits (146), Expect = 3e-10
 Identities = 26/156 (16%), Positives = 48/156 (30%), Gaps = 35/156 (22%)

Query: 155 FICEASIQKLHYLLNDDRTYQYGMDIEN-----PDKIPRGPYFIKQPTDVVFDLSKRSIL 209
           + C+ +              ++G+D ++         P     +     V  D       
Sbjct: 105 YWCQVA--------QWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEG----- 151

Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK--------------RFTLSG 255
           NDIT++C      N +  W+      +        PL++K              R + SG
Sbjct: 152 NDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSG 211

Query: 256 -GNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
             NL+I   +   D G   C+ +   G  +      
Sbjct: 212 ARNLVIRAAKI-TDAGRVWCELATGQGE-LDADRSS 245

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 59.5 bits (143), Expect = 6e-10
 Identities = 26/164 (15%), Positives = 43/164 (26%), Gaps = 45/164 (27%)

Query: 685 KAGDKVRLEC---VAFGYPVPSYNWTRRGSPLPRNAYFENFNRI---------------- 725
            AG  V L C   +A     P  +W +  SP      F+                     
Sbjct: 15  HAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKES 74

Query: 726 -----------------LTIPNVKVEDQGEYICRASN---------DRSALESSVTISIQ 759
                            L + +V  +D G Y C+ +          D  ++   VT    
Sbjct: 75  FGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTP 134

Query: 760 AEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELGH 803
           +            +D   D+T TC      +   +W+       
Sbjct: 135 SNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFE 178

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 54.5 bits (130), Expect = 3e-08
 Identities = 26/226 (11%), Positives = 43/226 (19%), Gaps = 56/226 (24%)

Query: 210 NDITLSC---YAGGYPNPSYEWFKED------------YVQDRLVANLIDPLSDKRF--- 251
             + L C    A     P   W K              Y         ++  S K     
Sbjct: 18  GTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGD 77

Query: 252 --------TLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRA 303
                    L+   L +      +D G Y C+ +             +       +    
Sbjct: 78  FLGRASVANLAAPTLRLTHV-HPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSN 136

Query: 304 PEIGNQN--------------------------WGKAMFCDPPTN---YPGVNYYWARDY 334
               +                            W              Y  +        
Sbjct: 137 NVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGI 196

Query: 335 FPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRN 380
                E   R   S    L   A +  DAG   C + +   +   +
Sbjct: 197 TWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDAD 242

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 54.5 bits (130), Expect = 3e-08
 Identities = 26/226 (11%), Positives = 43/226 (19%), Gaps = 56/226 (24%)

Query: 483 NDITLSC---YAGGYPNPSYEWFKED------------YVQDRLVANLIDPLSDKRF--- 524
             + L C    A     P   W K              Y         ++  S K     
Sbjct: 18  GTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGD 77

Query: 525 --------TLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRA 576
                    L+   L +      +D G Y C+ +             +       +    
Sbjct: 78  FLGRASVANLAAPTLRLTHV-HPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSN 136

Query: 577 PEIGNQN--------------------------WGKAMFCDPPTN---YPGVNYYWARDY 607
               +                            W              Y  +        
Sbjct: 137 NVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGI 196

Query: 608 FPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRN 653
                E   R   S    L   A +  DAG   C + +   +   +
Sbjct: 197 TWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDAD 242

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 51.8 bits (123), Expect = 2e-07
 Identities = 26/146 (17%), Positives = 40/146 (27%), Gaps = 21/146 (14%)

Query: 311 WGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDK-----------RVFVSYDGALYFSALE 359
           W K    D  T     NY W  +       +              V       L  + + 
Sbjct: 39  WLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVH 98

Query: 360 QIDAGNYSCNV--QSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEA--PKAGD 415
             D G Y C V   S  ++ G +     LKV  H+        NN   +  E      G+
Sbjct: 99  PQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTP------SNNVHVSTAEVVQVDEGN 152

Query: 416 KVRLECVAFGYPVPSYNWTRRGSPLP 441
            + + C        +  W    +   
Sbjct: 153 DITMTCPCTDCANANVTWYTGPTFFE 178

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 71.1 bits (174), Expect = 2e-14
 Identities = 21/137 (15%), Positives = 41/137 (29%), Gaps = 16/137 (11%)

Query: 687 GDKVRLECVAF--GYPVPSYNWTRRGSPL-----------PRNAYFENFNRILTIPNVKV 733
           G  + L    F     +    W R  + +              A+    N  L I N+  
Sbjct: 11  GHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTR 70

Query: 734 EDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTY 793
           +D G Y     +       +  + ++     + P+        ++ T TCE     DV  
Sbjct: 71  DDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYW---ECSNATLTCEVLEGTDVEL 127

Query: 794 SWFRNGELGHQMTDLLL 810
             ++  E    +    +
Sbjct: 128 KLYQGKEHLRSLRQKTM 144

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 69.6 bits (170), Expect = 6e-14
 Identities = 21/144 (14%), Positives = 35/144 (24%), Gaps = 21/144 (14%)

Query: 614 EDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFP 673
           +     +  +G L    L + D+G Y+  V S       N                L+  
Sbjct: 51  KSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKAL------------DLRIL 98

Query: 674 NNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKV 733
               K  P          L C             +    L          R  T+     
Sbjct: 99  EMVSK--PMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSL-------RQKTMSYQWT 149

Query: 734 EDQGEYICRASNDRSALESSVTIS 757
             +  + C+A N  S       ++
Sbjct: 150 NLRAPFKCKAVNRVSQESEMEVVN 173

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 55.7 bits (134), Expect = 4e-09
 Identities = 17/124 (13%), Positives = 30/124 (24%), Gaps = 19/124 (15%)

Query: 341 EDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFP 400
           +     +  +G L    L + D+G Y+  V S       N                L+  
Sbjct: 51  KSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKAL------------DLRIL 98

Query: 401 NNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKM 460
               K  P          L C             +    L          + ++     +
Sbjct: 99  EMVSK--PMIYWECSNATLTCEVLEGTDVELKLYQGKEHLR-----SLRQKTMSYQWTNL 151

Query: 461 RGPY 464
           R P+
Sbjct: 152 RAPF 155

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 53.0 bits (127), Expect = 3e-08
 Identities = 22/173 (12%), Positives = 47/173 (27%), Gaps = 29/173 (16%)

Query: 211 DITLSC--YAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSG-GNLIINDPRQVE 267
            I L+   +          W +   +       +   L    F +   G+L I +  + +
Sbjct: 13  GINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTR-D 71

Query: 268 DRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRA-----PEIGNQNWGKAMFCDPPTN 322
           D G+Y+    +  G+ I              +L+       P I  +     + C+    
Sbjct: 72  DSGTYNVTVYSTNGTRILN---------KALDLRILEMVSKPMIYWECSNATLTCEVL-E 121

Query: 323 YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVS 375
              V     +           +  +        S         + C   ++VS
Sbjct: 122 GTDVELKLYQG----------KEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVS 164

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 49.2 bits (117), Expect = 6e-07
 Identities = 25/179 (13%), Positives = 48/179 (26%), Gaps = 49/179 (27%)

Query: 414 GDKVRLECVAF--GYPVPSYNWTRRGSPL-----------PRNAYFENFNRILTIPNVKM 460
           G  + L    F     +    W R  + +              A+    N  L I N+  
Sbjct: 11  GHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTR 70

Query: 461 --RGPYFI-------KQPTDVVFDLSKRSIL---------NDITLSCYAGGYPNPSYEWF 502
              G Y +        +  +   DL    ++         ++ TL+C      +   + +
Sbjct: 71  DDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLEGTDVELKLY 130

Query: 503 KEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESV 561
           +                  K    S     ++  +    R  + CKA N+        V
Sbjct: 131 Q-----------------GKEHLRSLRQKTMS-YQWTNLRAPFKCKAVNRVSQESEMEV 171

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 15/122 (12%), Positives = 35/122 (28%), Gaps = 21/122 (17%)

Query: 168 LNDDRTYQYGMDIENPD-KIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSY 226
            +D  TY   + + + +           +  ++V         ++ TL+C      +   
Sbjct: 70  RDDSGTYN--VTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLEGTDVEL 127

Query: 227 EWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE 286
           + ++                  K    S     ++  +    R  + CKA N+       
Sbjct: 128 KLYQ-----------------GKEHLRSLRQKTMS-YQWTNLRAPFKCKAVNRVSQESEM 169

Query: 287 SV 288
            V
Sbjct: 170 EV 171

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 71.6 bits (175), Expect = 2e-14
 Identities = 26/127 (20%), Positives = 38/127 (29%), Gaps = 14/127 (11%)

Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI-------------LTIPNVKV 733
           G  V LEC             R       N       R                IP+V+V
Sbjct: 17  GSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQV 76

Query: 734 EDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTY 793
            D G+Y C      +     +T+ ++A     I      +    ++  TC+A G P    
Sbjct: 77  RDSGQYRCLVICGAAWDYKYLTVKVKASY-MRIDTRILEVPGTGEVQLTCQARGYPLAEV 135

Query: 794 SWFRNGE 800
           SW     
Sbjct: 136 SWQNVSV 142

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 61.6 bits (149), Expect = 6e-11
 Identities = 23/187 (12%), Positives = 47/187 (25%), Gaps = 54/187 (28%)

Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI-------------LTIPNVKM 460
           G  V LEC             R       N       R                IP+V++
Sbjct: 17  GSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQV 76

Query: 461 --RGPY------------------FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYE 500
              G Y                         +   + +     ++ L+C A GYP     
Sbjct: 77  RDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPLAEVS 136

Query: 501 WFK------EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFG 554
           W          +++            +  + ++   L +      +   ++ C   N   
Sbjct: 137 WQNVSVPANTSHIRT----------PEGLYQVT-SVLRLKP----QPSRNFSCMFWNAHM 181

Query: 555 SIISESV 561
             ++ ++
Sbjct: 182 KELTSAI 188

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 46.6 bits (110), Expect = 8e-06
 Identities = 17/135 (12%), Positives = 37/135 (27%), Gaps = 26/135 (19%)

Query: 321 TNYPGVNYYWARDYFPNFVEE----DKRVFVSYDG------ALYFSALEQIDAGNYSCNV 370
                      R        +     +R  +  +         +  +++  D+G Y C V
Sbjct: 27  DRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLV 86

Query: 371 QSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA--GDKVRLECVAFGYPV 428
                                  +  +K   ++ +      +     +V+L C A GYP+
Sbjct: 87  ICGA--------------AWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPL 132

Query: 429 PSYNWTRRGSPLPRN 443
              +W     P   +
Sbjct: 133 AEVSWQNVSVPANTS 147

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 45.4 bits (107), Expect = 2e-05
 Identities = 10/85 (11%), Positives = 28/85 (32%), Gaps = 21/85 (24%)

Query: 210 NDITLSCYAGGYPNPSYEWFK------EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDP 263
            ++ L+C A GYP     W          +++            +  + ++   L +   
Sbjct: 119 GEVQLTCQARGYPLAEVSWQNVSVPANTSHIRT----------PEGLYQVT-SVLRLKP- 166

Query: 264 RQVEDRGSYHCKASNKFGSIISESV 288
              +   ++ C   N     ++ ++
Sbjct: 167 ---QPSRNFSCMFWNAHMKELTSAI 188

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 68.3 bits (167), Expect = 5e-14
 Identities = 20/104 (19%), Positives = 31/104 (29%), Gaps = 10/104 (9%)

Query: 675 NFPKTF--PEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF--------ENFNR 724
            +P      E P+   +  +E V  G P P+ +W   G PL  +           E    
Sbjct: 6   YYPPRVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEG 65

Query: 725 ILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPL 768
            L        + G Y   A N       ++      EP     +
Sbjct: 66  CLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEV 109

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 55.6 bits (134), Expect = 1e-09
 Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 8/84 (9%)

Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVAN--LIDPLSDKRFTLSGGNLIINDPRQVED 268
           +  +     G P P+  W        + +    +I     +   +S G L+ N P    +
Sbjct: 22  EHCIEFVVRGNPPPTLHWLHNG----QPLRESKIIHVEYYQEGEISEGCLLFNKP-THYN 76

Query: 269 RGSYHCKASNKFGSIISESVQLAF 292
            G+Y   A N  G+  ++++   F
Sbjct: 77  NGNYTLIAKNPLGT-ANQTINGHF 99

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 55.6 bits (134), Expect = 1e-09
 Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 8/84 (9%)

Query: 484 DITLSCYAGGYPNPSYEWFKEDYVQDRLVAN--LIDPLSDKRFTLSGGNLIINDPRQVED 541
           +  +     G P P+  W        + +    +I     +   +S G L+ N P    +
Sbjct: 22  EHCIEFVVRGNPPPTLHWLHNG----QPLRESKIIHVEYYQEGEISEGCLLFNKP-THYN 76

Query: 542 RGSYHCKASNKFGSIISESVQLAF 565
            G+Y   A N  G+  ++++   F
Sbjct: 77  NGNYTLIAKNPLGT-ANQTINGHF 99

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 14/68 (20%), Positives = 21/68 (30%), Gaps = 10/68 (14%)

Query: 402 NFPKTF--PEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF--------ENFNR 451
            +P      E P+   +  +E V  G P P+ +W   G PL  +           E    
Sbjct: 6   YYPPRVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEG 65

Query: 452 ILTIPNVK 459
            L      
Sbjct: 66  CLLFNKPT 73

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 67.7 bits (166), Expect = 5e-14
 Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 5/80 (6%)

Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQGEYIC 741
           G   R++    G P P  +W   G  +  +        E     L    V+  D G Y C
Sbjct: 20  GRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYAC 79

Query: 742 RASNDRSALESSVTISIQAE 761
            A N       +V + + A+
Sbjct: 80  VAKNRAGEATFTVQLDVLAK 99

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 58.9 bits (143), Expect = 5e-11
 Identities = 23/104 (22%), Positives = 35/104 (33%), Gaps = 18/104 (17%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           P FI+ P ++  D  +        +     G P P   W+             +      
Sbjct: 6   PRFIQVPENMSIDEGR-----FCRMDFKVSGLPAPDVSWYLNG--------RTVQSDDLH 52

Query: 250 RFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
           +  +S      LI    R   D G+Y C A N+ G     +VQL
Sbjct: 53  KMIVSEKGLHSLIFEVVR-ASDAGAYACVAKNRAGEATF-TVQL 94

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 58.9 bits (143), Expect = 5e-11
 Identities = 23/104 (22%), Positives = 35/104 (33%), Gaps = 18/104 (17%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
           P FI+ P ++  D  +        +     G P P   W+             +      
Sbjct: 6   PRFIQVPENMSIDEGR-----FCRMDFKVSGLPAPDVSWYLNG--------RTVQSDDLH 52

Query: 523 RFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
           +  +S      LI    R   D G+Y C A N+ G     +VQL
Sbjct: 53  KMIVSEKGLHSLIFEVVR-ASDAGAYACVAKNRAGEATF-TVQL 94

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 5/51 (9%)

Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVK 459
           G   R++    G P P  +W   G  +  +        E     L    V+
Sbjct: 20  GRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVR 70

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 68.7 bits (168), Expect = 7e-14
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 5/82 (6%)

Query: 686 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQGEYI 740
            G   R +C   GYP P   W +  +P+  + +F     E  N  LTI  V  +D  +Y 
Sbjct: 55  EGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYT 114

Query: 741 CRASNDRSALESSVTISIQAEP 762
           C+A N       +  + ++   
Sbjct: 115 CKAVNSLGEATCTAELLVETMG 136

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 59.9 bits (145), Expect = 1e-10
 Identities = 24/100 (24%), Positives = 32/100 (32%), Gaps = 17/100 (17%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           PYF K   D+                C   GYP+P   WFK+D        N +      
Sbjct: 42  PYFTKTILDMEVVEGS-----AARFDCKVEGYPDPEVMWFKDD--------NPVKESRHF 88

Query: 250 RFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISE 286
           +          L I++    +D   Y CKA N  G     
Sbjct: 89  QIDYDEEGNCSLTISEVC-GDDDAKYTCKAVNSLGEATCT 127

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 59.9 bits (145), Expect = 1e-10
 Identities = 24/100 (24%), Positives = 32/100 (32%), Gaps = 17/100 (17%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
           PYF K   D+                C   GYP+P   WFK+D        N +      
Sbjct: 42  PYFTKTILDMEVVEGS-----AARFDCKVEGYPDPEVMWFKDD--------NPVKESRHF 88

Query: 523 RFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISE 559
           +          L I++    +D   Y CKA N  G     
Sbjct: 89  QIDYDEEGNCSLTISEVC-GDDDAKYTCKAVNSLGEATCT 127

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 48.7 bits (116), Expect = 6e-07
 Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 4/77 (5%)

Query: 728 IPNVKVEDQGEYIC----RASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTC 783
           +   K             +  N+ + LE         +P FT  + D  +   +   + C
Sbjct: 4   MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDC 63

Query: 784 EAFGVPDVTYSWFRNGE 800
           +  G PD    WF++  
Sbjct: 64  KVEGYPDPEVMWFKDDN 80

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 5/51 (9%)

Query: 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNV 458
            G   R +C   GYP P   W +  +P+  + +F     E  N  LTI  V
Sbjct: 55  EGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEV 105

>1tdq_B Aggrecan core protein; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: d.169.1.1 Length = 130

 Score = 68.1 bits (167), Expect = 7e-14
 Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 8/86 (9%)

Query: 28  RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQ 87
           +C + W +++  CYR      +T  DA+  C+   S L+++   +E  F+      ++ Q
Sbjct: 6   QCEEGWTKFQGHCYRHFPDR-ETWVDAERRCREQQSHLSSIVTPEEQEFV-----NKNAQ 59

Query: 88  RRKWYFGGT-QQSPNLWVNEDGTNLN 112
             +W  G   +     +   DG +L 
Sbjct: 60  DYQW-IGLNDRTIEGDFRWSDGHSLQ 84

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 67.5 bits (165), Expect = 9e-14
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 9/85 (10%)

Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYICR 742
            ++V L C     P     WT+ G  +  +       E+  R L +P V++ED GEY+C 
Sbjct: 28  LERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCE 86

Query: 743 ASNDRSALESSVTISIQAEPNFTIP 767
             ++     +S T+++   P   I 
Sbjct: 87  IDDES----ASFTVTVTEPPVRIIY 107

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 16/93 (17%)

Query: 196 PTDVVFDLSKRSIL----NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRF 251
            + +V+   K  +       + L+C     P     W K+           +        
Sbjct: 11  SSWIVYPSGKVYVAAVRLERVVLTCELCR-PWAEVRWTKDG--------EEVVESPALLL 61

Query: 252 TLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 282
                   L++    Q+ED G Y C+  ++  S
Sbjct: 62  QKEDTVRRLVLPAV-QLEDSGEYLCEIDDESAS 93

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 16/93 (17%)

Query: 469 PTDVVFDLSKRSIL----NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRF 524
            + +V+   K  +       + L+C     P     W K+           +        
Sbjct: 11  SSWIVYPSGKVYVAAVRLERVVLTCELCR-PWAEVRWTKDG--------EEVVESPALLL 61

Query: 525 TLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 555
                   L++    Q+ED G Y C+  ++  S
Sbjct: 62  QKEDTVRRLVLPAV-QLEDSGEYLCEIDDESAS 93

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 39.4 bits (92), Expect = 6e-04
 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 5/51 (9%)

Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKM 460
            ++V L C     P     WT+ G  +  +       E+  R L +P V++
Sbjct: 28  LERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQL 77

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 67.4 bits (165), Expect = 9e-14
 Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 9/83 (10%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQGEY 739
           + G      C          +W    +PL  N             +LT+  + ++D G  
Sbjct: 26  QEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTI 85

Query: 740 ICRASNDRSALESSVTISIQAEP 762
              A + R    +S  + +  +P
Sbjct: 86  YFEAGDQR----ASAALRVTEKP 104

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 15/101 (14%), Positives = 28/101 (27%), Gaps = 17/101 (16%)

Query: 458 VKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLID 517
           V+ R  + I+   DV             T  C           WF +           + 
Sbjct: 9   VQGRRVHIIEDLEDVDVQEGS-----SATFRCRISPANYEPVHWFLDK--------TPLH 55

Query: 518 PLSDKRFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGS 555
                      G    L +     ++D G+ + +A ++  S
Sbjct: 56  ANELNEIDAQPGGYHVLTLRQL-ALKDSGTIYFEAGDQRAS 95

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 47.8 bits (114), Expect = 6e-07
 Identities = 14/99 (14%), Positives = 26/99 (26%), Gaps = 17/99 (17%)

Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 246
            R  + I+   DV             T  C           WF +           +   
Sbjct: 11  GRRVHIIEDLEDVDVQEGS-----SATFRCRISPANYEPVHWFLDK--------TPLHAN 57

Query: 247 SDKRFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGS 282
                    G    L +     ++D G+ + +A ++  S
Sbjct: 58  ELNEIDAQPGGYHVLTLRQL-ALKDSGTIYFEAGDQRAS 95

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 7/60 (11%)

Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKMR--GPY 464
           + G      C          +W    +PL  N             +LT+  + ++  G  
Sbjct: 26  QEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTI 85

>1sl6_A C-type lectin DC-signr; sugar binding protein; HET: GAL NDG FUC; 2.25A {Homo sapiens} SCOP: d.169.1.1 PDB: 1xar_A Length = 184

 Score = 69.1 bits (169), Expect = 1e-13
 Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 5/95 (5%)

Query: 19  SQTIDELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIM 78
               + L   CP+ W  ++ +CY    S  +  +D+   C+ + + L  +  A+E  F+ 
Sbjct: 43  KTAFERLCRHCPKDWTFFQGNCYFMSNSQ-RNWHDSVTACQEVRAQLVVIKTAEEQNFLQ 101

Query: 79  YQLFWQDPQRRKWYFGGT-QQSPNLWVNEDGTNLN 112
            Q       R  W  G +       W   DG+ L+
Sbjct: 102 LQT--SRSNRFSW-MGLSDLNQEGTWQWVDGSPLS 133

>1ypq_A Oxidised low density lipoprotein (lectin-like) receptor 1; oxidized low density lipoprotein receptor, LOX-1, CTLD, C- type lectin like domain; 1.40A {Homo sapiens} SCOP: d.169.1.1 PDB: 1ypu_A 1yxk_A 3vlg_A 1ypo_A 1yxj_A Length = 135

 Score = 67.8 bits (166), Expect = 1e-13
 Identities = 27/131 (20%), Positives = 51/131 (38%), Gaps = 10/131 (7%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
           CPQ W+ + ++CY F          ++  C SLD+ L  +N   +  FI   +       
Sbjct: 9   CPQDWIWHGENCYLFSSGS-FNWEKSQEKCLSLDAKLLKINSTADLDFIQQAI---SYSS 64

Query: 89  RKWYFGGTQQSPN-LWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERV 147
             ++ G ++++P+  W+ EDG+ L           +        AY     ++R      
Sbjct: 65  FPFWMGLSRRNPSYPWLWEDGSPLMPHLFRVRGAVSQTYPSGTCAY-----IQRGAVYAE 119

Query: 148 TGMEPLLFICE 158
             +     IC+
Sbjct: 120 NCILAAFSICQ 130

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 65.8 bits (161), Expect = 2e-13
 Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 5/79 (6%)

Query: 687 GDKVRLECVAFGYPVPSY-NWTRRGSPLPRNA----YFENFNRILTIPNVKVEDQGEYIC 741
           G  V+  C    Y   +   W      L  +      +E+   IL + ++   D G Y C
Sbjct: 16  GGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRC 75

Query: 742 RASNDRSALESSVTISIQA 760
           +  ND     S   + ++ 
Sbjct: 76  KVVNDYGEDSSYAELFVKG 94

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 53.9 bits (130), Expect = 3e-09
 Identities = 18/101 (17%), Positives = 28/101 (27%), Gaps = 17/101 (16%)

Query: 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSY-EWFKEDYVQDRLVANLIDPLS 247
           G     Q    V +         +   C    Y   +   W+             ++   
Sbjct: 1   GAMVSGQIMHAVGEEGG-----HVKYVCKIENYDQSTQVTWYFGV--------RQLENSE 47

Query: 248 DKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISE 286
               T   G   L + D  +  D G+Y CK  N +G   S 
Sbjct: 48  KYEITYEDGVAILYVKDITK-LDDGTYRCKVVNDYGEDSSY 87

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 53.9 bits (130), Expect = 3e-09
 Identities = 18/101 (17%), Positives = 28/101 (27%), Gaps = 17/101 (16%)

Query: 462 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSY-EWFKEDYVQDRLVANLIDPLS 520
           G     Q    V +         +   C    Y   +   W+             ++   
Sbjct: 1   GAMVSGQIMHAVGEEGG-----HVKYVCKIENYDQSTQVTWYFGV--------RQLENSE 47

Query: 521 DKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISE 559
               T   G   L + D  +  D G+Y CK  N +G   S 
Sbjct: 48  KYEITYEDGVAILYVKDITK-LDDGTYRCKVVNDYGEDSSY 87

>1fm5_A Early activation antigen CD69; C-type lectin-like domain, natural killer cell receptor, lectin, C-type lectin, immune system; 2.27A {Homo sapiens} SCOP: d.169.1.1 Length = 199

 Score = 68.8 bits (168), Expect = 2e-13
 Identities = 20/114 (17%), Positives = 35/114 (30%), Gaps = 14/114 (12%)

Query: 3   LISSCLFIFVSFHSVFSQTIDELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD 62
           +  S           FS   D     C + WV Y+  CY       ++   A+  C    
Sbjct: 59  IALSVGQYNCPGQYTFSMPSDSHVSSCSEDWVGYQRKCYFISTVK-RSWTSAQNACSEHG 117

Query: 63  SDLANVNDADEHGFIMYQL----FWQDPQRRKWYFGGTQQSPNLWVNEDGTNLN 112
           + LA ++   +  F+         W          G  ++  + W   +G   N
Sbjct: 118 ATLAVIDSEKDMNFLKRYAGREEHW---------VGLKKEPGHPWKWSNGKEFN 162

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 65.8 bits (161), Expect = 2e-13
 Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 5/80 (6%)

Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQGEYIC 741
           G          G P P   W + G  + R+        E+    L I +V  ED    + 
Sbjct: 20  GSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMV 79

Query: 742 RASNDRSALESSVTISIQAE 761
           +A N      S   + +QA+
Sbjct: 80  KAINIAGETSSHAFLLVQAK 99

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 63.1 bits (154), Expect = 2e-12
 Identities = 22/104 (21%), Positives = 29/104 (27%), Gaps = 17/104 (16%)

Query: 459 KMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDP 518
            M  P   ++               D        G P+P  EW+K            I+ 
Sbjct: 2   SMEAPKIFERIQSQTVGQGS-----DAHFRVRVVGKPDPECEWYKNG--------VKIER 48

Query: 519 LSDKRFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISE 559
                +     N   L+I D    ED  S   KA N  G   S 
Sbjct: 49  SDRIYWYWPEDNVCELVIRDV-TGEDSASIMVKAINIAGETSSH 91

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 62.3 bits (152), Expect = 4e-12
 Identities = 21/100 (21%), Positives = 28/100 (28%), Gaps = 17/100 (17%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           P   ++               D        G P+P  EW+K            I+     
Sbjct: 6   PKIFERIQSQTVGQGS-----DAHFRVRVVGKPDPECEWYKNG--------VKIERSDRI 52

Query: 250 RFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISE 286
            +     N   L+I D    ED  S   KA N  G   S 
Sbjct: 53  YWYWPEDNVCELVIRDV-TGEDSASIMVKAINIAGETSSH 91

>2xr6_A CD209 antigen; sugar binding protein, carbohydrate binding, mannose; HET: MAN 07B; 1.35A {Homo sapiens} PDB: 1sl4_A* 2it6_A* 1k9i_A* 2xr5_A* 1sl5_A* 2it5_A* 1xph_A 1k9j_A* Length = 170

 Score = 67.9 bits (166), Expect = 2e-13
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 5/86 (5%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
           CP  W  ++ +CY    S  +  +D+   CK + + L  +  A+E  F+  Q       R
Sbjct: 22  CPWEWTFFQGNCYFMSNSQ-RNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSS--RSNR 78

Query: 89  RKWYFGGT-QQSPNLWVNEDGTNLNE 113
             W  G +       W   DG+ L  
Sbjct: 79  FTW-MGLSDLNQEGTWQWVDGSPLLP 103

>3hup_A Early activation antigen CD69; C-type lectin-like domain, disulfide bond, glycoprotein, LEC membrane, phosphoprotein, signal-anchor, transmembrane; 1.37A {Homo sapiens} PDB: 1e87_A 1e8i_A 3cck_A Length = 130

 Score = 66.7 bits (163), Expect = 3e-13
 Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 6/85 (7%)

Query: 28  RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQ 87
            C + WV Y+  CY       ++   A+  C    + LA ++   +  F+         +
Sbjct: 15  SCSEDWVGYQRKCYFISTVK-RSWTSAQNACSEHGATLAVIDSEKDMNFLKRYA----GR 69

Query: 88  RRKWYFGGTQQSPNLWVNEDGTNLN 112
              W  G  ++  + W   +G   N
Sbjct: 70  EEHW-VGLKKEPGHPWKWSNGKEFN 93

>2b6b_D CD209 antigen; cryo EM dengue CRD DC-SIGN, icosahedral virus, virus-recepto; 25.00A {Homo sapiens} SCOP: d.169.1.1 Length = 175

 Score = 67.9 bits (166), Expect = 3e-13
 Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 5/86 (5%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
           CP  W  ++ +CY    S  +  +D+   CK + + L  +  A+E  F+  Q        
Sbjct: 27  CPWEWTFFQGNCYFMSNSQ-RNWHDSITACKEVGAQLVVIKSAEEQNFLQLQS---SRSN 82

Query: 89  RKWYFGGT-QQSPNLWVNEDGTNLNE 113
           R  + G +       W   DG+ L  
Sbjct: 83  RFTWMGLSDLNQEGTWQWVDGSPLLP 108

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 65.5 bits (160), Expect = 3e-13
 Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 6/83 (7%)

Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA------YFENFNRILTIPNVKVEDQGEYI 740
           G  V   C   G P P   W + G  +   +         +    L      ++D G Y 
Sbjct: 23  GMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYT 82

Query: 741 CRASNDRSALESSVTISIQAEPN 763
             A+N +  +  +  + +QA  +
Sbjct: 83  IMAANPQGRISCTGRLMVQAVNS 105

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 22/104 (21%), Positives = 32/104 (30%), Gaps = 18/104 (17%)

Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 246
              P+F  +                +T +C   G P P   WFK+           I P 
Sbjct: 6   SGAPFFEMKLKHYKIFEGM-----PVTFTCRVAGNPKPKIYWFKDG--------KQISPK 52

Query: 247 SDKRFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGSIISE 286
           SD        +    L       ++D G+Y   A+N  G I   
Sbjct: 53  SDHYTIQRDLDGTCSLHTTAS-TLDDDGNYTIMAANPQGRISCT 95

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 22/101 (21%), Positives = 32/101 (31%), Gaps = 18/101 (17%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
           P+F  +                +T +C   G P P   WFK+           I P SD 
Sbjct: 9   PFFEMKLKHYKIFEGM-----PVTFTCRVAGNPKPKIYWFKDG--------KQISPKSDH 55

Query: 523 RFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGSIISE 559
                  +    L       ++D G+Y   A+N  G I   
Sbjct: 56  YTIQRDLDGTCSLHTTAS-TLDDDGNYTIMAANPQGRISCT 95

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 69.9 bits (170), Expect = 3e-13
 Identities = 42/291 (14%), Positives = 72/291 (24%), Gaps = 36/291 (12%)

Query: 485 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 544
           + ++C                            PL  K   L G N  + +   V++   
Sbjct: 17  VLVTCSTSCDQPKLLGIE--------------TPLPKKELLLPGNNRKVYELSNVQEDSQ 62

Query: 545 YHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYP--GVNYY 602
             C ++   G   +++    +       L   P          + C      P   +   
Sbjct: 63  PMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVV 122

Query: 603 WARD----YFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFP 658
             R          V E   V                   N+SC  +    D    G    
Sbjct: 123 LLRGEKELKREPAVGEPAEVT------TTVLVRRDHHGANFSCRTEL---DLRPQGLELF 173

Query: 659 LKVFPHSNFQQLKFPNNFPK-TFPEAPKAGDKVRLECVAFG-YPVPSYNWTRRGSPLPRN 716
                    Q    P   P+   P   +   +  + C   G +PV              N
Sbjct: 174 ENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLN 233

Query: 717 AYFENFNRILTIP---NVKVEDQG--EYICRASNDRSALESSVTISIQAEP 762
                 N   +     +V  ED+G     C       + E+  T++I + P
Sbjct: 234 PTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFP 284

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 61.4 bits (148), Expect = 3e-10
 Identities = 17/132 (12%), Positives = 36/132 (27%), Gaps = 9/132 (6%)

Query: 681 PEAP--KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGE 738
           P       G  V + C                 PLP+       N         V++  +
Sbjct: 6   PSKVILPRGGSVLVTCSTSCDQPKLLGIET---PLPKKELLLPGNNRKVYELSNVQEDSQ 62

Query: 739 YICRASNDRSALESSVTISIQAEP-NFTIPLTDKHMDNQADLTWTCEAFGV---PDVTYS 794
            +C ++       +   +++   P    +           +LT  C+  G     ++T  
Sbjct: 63  PMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVV 122

Query: 795 WFRNGELGHQMT 806
             R  +   +  
Sbjct: 123 LLRGEKELKREP 134

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 51.8 bits (123), Expect = 3e-07
 Identities = 27/183 (14%), Positives = 43/183 (23%), Gaps = 28/183 (15%)

Query: 635 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTF-PEAPKAGDKVRLE 693
           +     C         G++     L V+          P        P     G  + L 
Sbjct: 59  EDSQPMCYSNC---PDGQSTAKTFLTVYW--------TPERVELAPLPSWQPVGKNLTLR 107

Query: 694 C-VAFGYPVP--SYNWTRRGSPLPRNAYF-ENFNRILTIPNVKVEDQGEYICRASNDRSA 749
           C V  G P    +    R    L R     E      T+   +      + CR   D   
Sbjct: 108 CQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRP 167

Query: 750 LESSVTISIQAEPNFTI---PLTDKHMDNQADL------TWTCEAFGVP---DVTYSWFR 797
               +  +  A         P T   + +   L      T  C   G+    +       
Sbjct: 168 QGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLAL 227

Query: 798 NGE 800
             +
Sbjct: 228 GDQ 230

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 68.5 bits (167), Expect = 4e-13
 Identities = 26/181 (14%), Positives = 48/181 (26%), Gaps = 26/181 (14%)

Query: 601 YYWARDYFPNFVEEDK-RVFVSYDG------ALYFSALEQIDAGNYSCNVQSKVSDTGRN 653
           +    +         + R  +  D       AL  + ++  DAG Y C +    +D  R 
Sbjct: 50  FVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYGGADYKR- 108

Query: 654 GPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPL 713
                +KV          +     +     P    +  L C A GYP     WT     +
Sbjct: 109 ---ITVKV-------NAPYNKINQRILVVDPV-TSEHELTCQAEGYPKAEVIWTSSDHQV 157

Query: 714 PRNAYFENFNR-------ILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTI 766
                    ++       + +   +       + C           +  + I   P    
Sbjct: 158 LSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPLAHP 217

Query: 767 P 767
           P
Sbjct: 218 P 218

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 55.4 bits (133), Expect = 1e-08
 Identities = 24/141 (17%), Positives = 38/141 (26%), Gaps = 28/141 (19%)

Query: 687 GDKVRLECVAFGYPVPS---YNWTRR-----------GSPLPRNAYFENFNRI------- 725
           G  + +EC                             G    +  +     R        
Sbjct: 16  GSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQL 75

Query: 726 ------LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADL 779
                 L I +VK++D G Y C  S    A    +T+ + A  N             ++ 
Sbjct: 76  SLGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVKVNAPYNKINQRILVVDPVTSEH 134

Query: 780 TWTCEAFGVPDVTYSWFRNGE 800
             TC+A G P     W  +  
Sbjct: 135 ELTCQAEGYPKAEVIWTSSDH 155

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 8/81 (9%)

Query: 210 NDITLSCYAGGYPNPSYEWFKED--YVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 267
           ++  L+C A GYP     W   D   +  +          +K F ++   L IN      
Sbjct: 132 SEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKR-EEKLFNVT-STLRINT----T 185

Query: 268 DRGSYHCKASNKFGSIISESV 288
               ++C            + 
Sbjct: 186 TNEIFYCTFRRLDPEENHTAE 206

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 8/81 (9%)

Query: 483 NDITLSCYAGGYPNPSYEWFKED--YVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 540
           ++  L+C A GYP     W   D   +  +          +K F ++   L IN      
Sbjct: 132 SEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKR-EEKLFNVT-STLRINT----T 185

Query: 541 DRGSYHCKASNKFGSIISESV 561
               ++C            + 
Sbjct: 186 TNEIFYCTFRRLDPEENHTAE 206

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 45.4 bits (107), Expect = 2e-05
 Identities = 28/185 (15%), Positives = 48/185 (25%), Gaps = 25/185 (13%)

Query: 211 DITLSCYAGGYPNPSY-----EWFKED-----YVQDRLVANLIDPLSDKRFTLSG----- 255
           ++T+ C                W  ED     +V       +      +R  L       
Sbjct: 18  NMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSL 77

Query: 256 GN--LIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGK 313
           GN  L I D  +++D G Y C  S   G    + + +          +R   +       
Sbjct: 78  GNAALQITDV-KLQDAGVYRCMISY--GGADYKRITVKVNAPYNKINQRILVVDPVTSEH 134

Query: 314 AMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALY--FSAL--EQIDAGNYSCN 369
            + C     YP     W          +        +  L+   S L         + C 
Sbjct: 135 ELTCQ-AEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCT 193

Query: 370 VQSKV 374
            +   
Sbjct: 194 FRRLD 198

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 45.4 bits (107), Expect = 2e-05
 Identities = 28/185 (15%), Positives = 48/185 (25%), Gaps = 25/185 (13%)

Query: 484 DITLSCYAGGYPNPSY-----EWFKED-----YVQDRLVANLIDPLSDKRFTLSG----- 528
           ++T+ C                W  ED     +V       +      +R  L       
Sbjct: 18  NMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSL 77

Query: 529 GN--LIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGK 586
           GN  L I D  +++D G Y C  S   G    + + +          +R   +       
Sbjct: 78  GNAALQITDV-KLQDAGVYRCMISY--GGADYKRITVKVNAPYNKINQRILVVDPVTSEH 134

Query: 587 AMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALY--FSAL--EQIDAGNYSCN 642
            + C     YP     W          +        +  L+   S L         + C 
Sbjct: 135 ELTCQ-AEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCT 193

Query: 643 VQSKV 647
            +   
Sbjct: 194 FRRLD 198

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 45.0 bits (106), Expect = 3e-05
 Identities = 22/120 (18%), Positives = 36/120 (30%), Gaps = 19/120 (15%)

Query: 328 YYWARDYFPNFVEEDK-RVFVSYDG------ALYFSALEQIDAGNYSCNVQSKVSDTGRN 380
           +    +         + R  +  D       AL  + ++  DAG Y C +    +D  R 
Sbjct: 50  FVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYGGADYKR- 108

Query: 381 GPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPL 440
                +KV          +     +     P    +  L C A GYP     WT     +
Sbjct: 109 ---ITVKV-------NAPYNKINQRILVVDPV-TSEHELTCQAEGYPKAEVIWTSSDHQV 157

>3rs1_A C-type lectin domain family 2 member I; C-type lectin-like, ligand of NK receptor, natural killer CE receptors, surface of activated T lymphocytes; 1.94A {Mus musculus} Length = 122

 Score = 65.5 bits (160), Expect = 4e-13
 Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 15/91 (16%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL----FWQ 84
           C ++W    + C+ F   P +    A+  C + ++ LA  ++ +E  F+         W 
Sbjct: 8   CSKNWTGVGNKCFYFSGYP-RNWTFAQAFCMAQEAQLARFDNEEELIFLKRFKGDFDSW- 65

Query: 85  DPQRRKWYFGGT-QQSPNLWVNEDGTNLNEL 114
                    G   + S + W   + T  N +
Sbjct: 66  --------IGLHRESSEHPWKWTNNTEYNNM 88

>2bpd_A Dectin-1; receptor, beta-glucan, fungal recognition, C-type lectin-like domain, CTLD, carbohydrate; 1.5A {Mus musculus} PDB: 2bph_A 2bpe_A 2cl8_A* Length = 142

 Score = 66.3 bits (162), Expect = 4e-13
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 4/85 (4%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
           C  +W+ +  SCY F  S   +   +K +C  L + L  ++++ E  FI  Q      + 
Sbjct: 17  CLPNWIMHGKSCYLFSFSG-NSWYGSKRHCSQLGAHLLKIDNSKEFEFIESQT--SSHRI 73

Query: 89  RKWYFGGTQQSPN-LWVNEDGTNLN 112
             ++ G ++      W  EDG+   
Sbjct: 74  NAFWIGLSRNQSEGPWFWEDGSAFF 98

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 67.3 bits (164), Expect = 5e-13
 Identities = 27/146 (18%), Positives = 53/146 (36%), Gaps = 18/146 (12%)

Query: 615 DKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPN 674
            KR+  +   +L  S L+  D G+Y   + +K S    +   + L++       Q+   +
Sbjct: 61  GKRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSS---YTLRILRQLRNIQVTNHS 117

Query: 675 NFPKTFPEAPKAGDKVRLEC-VAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKV 733
              +          ++ L C V       S+ W   G+ L           +    + ++
Sbjct: 118 QLFQN------MTCELHLTCSVEDADDNVSFRWEALGNTLSSQ------PNLTVSWDPRI 165

Query: 734 EDQGEYICRASNDRSALESSVTISIQ 759
             + +Y C A N  S    S ++S Q
Sbjct: 166 SSEQDYTCIAENAVS--NLSFSVSAQ 189

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 55.0 bits (132), Expect = 1e-08
 Identities = 33/147 (22%), Positives = 50/147 (34%), Gaps = 23/147 (15%)

Query: 687 GDKVRLEC-VAFGYPVPSYNWTRRGSPL-----------------PRNAYFENF--NRIL 726
           G+ V L      G  V    W    + L                 P+     NF  +  L
Sbjct: 13  GESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSL 72

Query: 727 TIPNVKVEDQGEYICRASNDRSALESSVTISIQAE-PNFTIPLTDKHMDNQAD-LTWTCE 784
            + N+K+ED G Y  + S   SA  SS T+ I  +  N  +    +   N    L  TC 
Sbjct: 73  QLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCS 132

Query: 785 AF-GVPDVTYSWFRNGELGHQMTDLLL 810
                 +V++ W   G       +L +
Sbjct: 133 VEDADDNVSFRWEALGNTLSSQPNLTV 159

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 53.8 bits (129), Expect = 3e-08
 Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 21/176 (11%)

Query: 211 DITLSC-YAGGYPNPSYEWFKEDYVQDRLVA--------NLIDPLSDKRFTLSG-GNLII 260
            +TL   +  G       W   +     +V         ++ +P   KR   +   +L +
Sbjct: 15  SVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQL 74

Query: 261 NDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMF-CDP 319
           ++ + +ED GSY  + S K  + +S         +    +    ++      +    C  
Sbjct: 75  SNLK-MEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSV 133

Query: 320 PTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVS 375
                 V++ W      N +     + VS+D  +           +Y+C  ++ VS
Sbjct: 134 EDADDNVSFRWEAL--GNTLSSQPNLTVSWDPRIS-------SEQDYTCIAENAVS 180

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 53.8 bits (129), Expect = 3e-08
 Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 21/176 (11%)

Query: 484 DITLSC-YAGGYPNPSYEWFKEDYVQDRLVA--------NLIDPLSDKRFTLSG-GNLII 533
            +TL   +  G       W   +     +V         ++ +P   KR   +   +L +
Sbjct: 15  SVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQL 74

Query: 534 NDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMF-CDP 592
           ++ + +ED GSY  + S K  + +S         +    +    ++      +    C  
Sbjct: 75  SNLK-MEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSV 133

Query: 593 PTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVS 648
                 V++ W      N +     + VS+D  +           +Y+C  ++ VS
Sbjct: 134 EDADDNVSFRWEAL--GNTLSSQPNLTVSWDPRIS-------SEQDYTCIAENAVS 180

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 45.0 bits (106), Expect = 3e-05
 Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 10/103 (9%)

Query: 342 DKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPN 401
            KR+  +   +L  S L+  D G+Y   + +K S    +   + L++       Q+   +
Sbjct: 61  GKRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSS---YTLRILRQLRNIQVTNHS 117

Query: 402 NFPKTFPEAPKAGDKVRLEC-VAFGYPVPSYNWTRRGSPLPRN 443
              +          ++ L C V       S+ W   G+ L   
Sbjct: 118 QLFQN------MTCELHLTCSVEDADDNVSFRWEALGNTLSSQ 154

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 45.0 bits (106), Expect = 3e-05
 Identities = 36/195 (18%), Positives = 55/195 (28%), Gaps = 64/195 (32%)

Query: 414 GDKVRLEC-VAFGYPVPSYNWTRRGSPL-----------------PRNAYFENF--NRIL 453
           G+ V L      G  V    W    + L                 P+     NF  +  L
Sbjct: 13  GESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSL 72

Query: 454 TIPNVKMR--GPY------------------FIKQPTDVVFDLSKRSILN---DITLSCY 490
            + N+KM   G Y                   ++Q  ++      +   N   ++ L+C 
Sbjct: 73  QLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCS 132

Query: 491 A-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNL-IINDPRQVEDRGSYHCK 548
                 N S+ W                         S  NL +  DPR +     Y C 
Sbjct: 133 VEDADDNVSFRWEA-----------------LGNTLSSQPNLTVSWDPR-ISSEQDYTCI 174

Query: 549 ASNKFGSIISESVQL 563
           A N   + +S SV  
Sbjct: 175 AENAVSN-LSFSVSA 188

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 41.1 bits (96), Expect = 5e-04
 Identities = 18/82 (21%), Positives = 26/82 (31%), Gaps = 21/82 (25%)

Query: 211 DITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNL-IINDPRQVED 268
           ++ L+C       N S+ W                         S  NL +  DPR +  
Sbjct: 126 ELHLTCSVEDADDNVSFRWEA-----------------LGNTLSSQPNLTVSWDPR-ISS 167

Query: 269 RGSYHCKASNKFGSIISESVQL 290
              Y C A N   + +S SV  
Sbjct: 168 EQDYTCIAENAVSN-LSFSVSA 188

>2zib_A Type II antifreeze protein; thermal hysteresis, lectin; 1.34A {Brachyopsis rostratus} Length = 133

 Score = 65.5 bits (160), Expect = 7e-13
 Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 14/90 (15%)

Query: 27  LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFI---MYQLFW 83
           L CP  W  +   C+    +   T + A+ NC +    LA+++  +E  +I   +  + W
Sbjct: 8   LVCPAGWTLHGQRCFYSEATA-MTWDLAEANCVNKGGHLASIHSLEEQLYIKDIVAGIVW 66

Query: 84  QDPQRRKWYFGGT-QQSPNLWVNEDGTNLN 112
                     GG+  +    W   DGT ++
Sbjct: 67  ---------IGGSACKVAGAWSWTDGTPVD 87

>2py2_A Antifreeze protein type II; type II antifreeze protein; 1.70A {Clupea harengus} Length = 136

 Score = 65.4 bits (160), Expect = 7e-13
 Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 5/85 (5%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
           CP  W  +   C+ F         DA+ +C    ++LA+++  +E  F+           
Sbjct: 4   CPTDWKMFNGRCFLFNPLQ-LHWADAQESCMKEGANLASIHSLEESTFVKELT---SADL 59

Query: 89  RKWYFGGT-QQSPNLWVNEDGTNLN 112
              + GGT  Q    W   D T+++
Sbjct: 60  IPSWIGGTDCQVSTRWFWMDSTSMD 84

>2ls8_A C-type lectin domain family 4 member D; structural genomics, NEW YORK structural genomics research consortium, nysgrc, PSI-biology, immune system; NMR {Homo sapiens} Length = 156

 Score = 65.5 bits (160), Expect = 1e-12
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 6/85 (7%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
           CP  W  ++ +CY  +    KT  +++ NC  + + L  ++   E  FI+  L     +R
Sbjct: 3   CPIDWRAFQSNCYFPLTDN-KTWAESERNCSGMGAHLMTISTEAEQNFIIQFL----DRR 57

Query: 89  RKWYFGGT-QQSPNLWVNEDGTNLN 112
             ++ G   + +   W   D T  N
Sbjct: 58  LSYFLGLRDENAKGQWRWVDQTPFN 82

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 64.0 bits (156), Expect = 1e-12
 Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 5/75 (6%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYI 740
              ++V L C           W + G  +  +       +     L +P  KV+D GE+ 
Sbjct: 23  TTSERVVLTCEL-SRVDFPATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFE 81

Query: 741 CRASNDRSALESSVT 755
           CR     +    +V 
Sbjct: 82  CRTEGVSAFFGVTVQ 96

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 16/97 (16%)

Query: 189 GPYFIKQPTDVVFDLSKRSILND-ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 247
           GP  I  P D V   S     ++ + L+C      +    W+K+           ++   
Sbjct: 7   GPVHILSPQDKV---SLTFTTSERVVLTCELSR-VDFPATWYKDG--------QKVEESE 54

Query: 248 DKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 282
                + G    LI+ +  +V+D G + C+       
Sbjct: 55  LLVVKMDGRKHRLILPEA-KVQDSGEFECRTEGVSAF 90

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 16/97 (16%)

Query: 462 GPYFIKQPTDVVFDLSKRSILND-ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 520
           GP  I  P D V   S     ++ + L+C      +    W+K+           ++   
Sbjct: 7   GPVHILSPQDKV---SLTFTTSERVVLTCELSR-VDFPATWYKDG--------QKVEESE 54

Query: 521 DKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 555
                + G    LI+ +  +V+D G + C+       
Sbjct: 55  LLVVKMDGRKHRLILPEA-KVQDSGEFECRTEGVSAF 90

>3m9z_A Killer cell lectin-like receptor subfamily B MEMB; C-type lectin-like domain, domain swapping, disulfide bond, transmembrane protein; 1.70A {Mus musculus} PDB: 3t3a_A Length = 139

 Score = 64.8 bits (158), Expect = 1e-12
 Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 5/87 (5%)

Query: 27  LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDP 86
           L CPQ W+ +RD C+   +    T  +  ++C    + L  + D +E  F++  +     
Sbjct: 4   LECPQDWLSHRDKCFHVSQVS-NTWEEGLVDCDGKGATLMLIQDQEELRFLLDSI---KE 59

Query: 87  QRRKWYFGGTQQSPN-LWVNEDGTNLN 112
           +   ++ G     P+  W   +G+ LN
Sbjct: 60  KYNSFWIGLRYTLPDMNWKWINGSTLN 86

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 63.5 bits (155), Expect = 1e-12
 Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 11/90 (12%)

Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYICR 742
           G    L+C      V    W +    L     +    +     L I ++ V D GEY C 
Sbjct: 23  GATATLQCEL--SKVAPVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCM 80

Query: 743 ASNDRSALESSVTISIQAEPN-FTIPLTDK 771
              +R    +S T++++A P  FT      
Sbjct: 81  CGQER----TSATLTVRALPARFTEGSGPS 106

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 17/95 (17%), Positives = 21/95 (22%), Gaps = 18/95 (18%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
             F +                  TL C          EW K            +      
Sbjct: 9   ARFTQDLKTKEASEGA-----TATLQCELS--KVAPVEWKKGP--------ETLRDGGRY 53

Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 282
                G    L I+D   V D G Y C    +  S
Sbjct: 54  SLKQDGTRCELQIHDL-SVADAGEYSCMCGQERTS 87

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 17/95 (17%), Positives = 21/95 (22%), Gaps = 18/95 (18%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
             F +                  TL C          EW K            +      
Sbjct: 9   ARFTQDLKTKEASEGA-----TATLQCELS--KVAPVEWKKGP--------ETLRDGGRY 53

Query: 523 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 555
                G    L I+D   V D G Y C    +  S
Sbjct: 54  SLKQDGTRCELQIHDL-SVADAGEYSCMCGQERTS 87

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 63.6 bits (155), Expect = 1e-12
 Identities = 16/98 (16%), Positives = 26/98 (26%), Gaps = 17/98 (17%)

Query: 677 PKTFPEAPKA--------GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNR 724
              F +   A        G    L C           W + G  L  ++          R
Sbjct: 8   KVVFAKEQPAHREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAVGCTR 66

Query: 725 ILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEP 762
            L +      + GEY C A       + S  + +  + 
Sbjct: 67  RLVVQQAGQAEAGEYSCEAGGQ----QLSFRLQVAGQC 100

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 12/74 (16%)

Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGN--LIINDPRQVED 268
             TLSC           W+K+           +   S  R    G    L++       +
Sbjct: 28  SATLSCEVAQ-AQTEVTWYKDG--------KKLSSSSKVRVEAVGCTRRLVVQQA-GQAE 77

Query: 269 RGSYHCKASNKFGS 282
            G Y C+A  +  S
Sbjct: 78  AGEYSCEAGGQQLS 91

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 12/74 (16%)

Query: 484 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGN--LIINDPRQVED 541
             TLSC           W+K+           +   S  R    G    L++       +
Sbjct: 28  SATLSCEVAQ-AQTEVTWYKDG--------KKLSSSSKVRVEAVGCTRRLVVQQA-GQAE 77

Query: 542 RGSYHCKASNKFGS 555
            G Y C+A  +  S
Sbjct: 78  AGEYSCEAGGQQLS 91

>2c6u_A CLEC1B protein; lectin, rhodocytin, aggretin, C-type lectin-like, platelets, thrombosis; 1.6A {Homo sapiens} Length = 122

 Score = 64.0 bits (156), Expect = 2e-12
 Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 9/93 (9%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL---FW-- 83
           C  +W  Y DSCY F +    T  ++K  C  +++ L  +++ +   +I  +     W  
Sbjct: 3   CDTNWRYYGDSCYGFFRHN-LTWEESKQYCTDMNATLLKIDNRNIVEYIKARTHLIRWVG 61

Query: 84  --QDPQRRKWYF-GGTQQSPNLWVNEDGTNLNE 113
             +      W +  G+  S N++   +    N 
Sbjct: 62  LSRQKSNEVWKWEDGSVISENMFEFLEDGKGNM 94

>2afp_A Protein (SEA raven type II antifreeze protein); recombinant SEA raven protein, solution backbone fold, C- type lectin; NMR {Hemitripterus americanus} SCOP: d.169.1.1 Length = 129

 Score = 64.3 bits (157), Expect = 2e-12
 Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 14/89 (15%)

Query: 28  RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFI---MYQLFWQ 84
            CP  W    D C  +  +   T   A+ NC  L   LA+++  +EH FI      + W 
Sbjct: 6   NCPAGWQPLGDRCIYYETTA-MTWALAETNCMKLGGHLASIHSQEEHSFIQTLNAGVVW- 63

Query: 85  DPQRRKWYFGGT-QQSPNLWVNEDGTNLN 112
                    GG+       W   DGT +N
Sbjct: 64  --------IGGSACLQAGAWTWSDGTPMN 84

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 63.5 bits (155), Expect = 2e-12
 Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 9/81 (11%)

Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYICR 742
           G+ V L C       P  +W +    + ++  +    E    +L I    ++D GEY C 
Sbjct: 23  GEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCE 81

Query: 743 ASNDRSALESSVTISIQAEPN 763
               +    S+ ++ ++ + +
Sbjct: 82  VEASK----STASLHVEEKAS 98

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 16/95 (16%), Positives = 24/95 (25%), Gaps = 17/95 (17%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
              IK   D      +      + L C       P   W K+           I      
Sbjct: 9   AAIIKPLEDQWVAPGED-----VELRCELSRAGTP-VHWLKDR--------KAIRKSQKY 54

Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 282
                G    L+I     ++D G Y C+      +
Sbjct: 55  DVVCEGTMAMLVIRGA-SLKDAGEYTCEVEASKST 88

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 16/95 (16%), Positives = 24/95 (25%), Gaps = 17/95 (17%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
              IK   D      +      + L C       P   W K+           I      
Sbjct: 9   AAIIKPLEDQWVAPGED-----VELRCELSRAGTP-VHWLKDR--------KAIRKSQKY 54

Query: 523 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 555
                G    L+I     ++D G Y C+      +
Sbjct: 55  DVVCEGTMAMLVIRGA-SLKDAGEYTCEVEASKST 88

>3bdw_B NKG2-A/NKG2-B type II integral membrane protein; NK cells, receptor, glycoprotein, lectin, signal-A transmembrane, immune system receptor; 2.50A {Homo sapiens} PDB: 3cdg_K 3cii_H Length = 120

 Score = 64.0 bits (156), Expect = 2e-12
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 13/88 (14%)

Query: 28  RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL--FWQD 85
            CP+ W+ Y +SCY   K   +T  ++ L C S +S L ++++ +E  F+       W  
Sbjct: 6   HCPEEWITYSNSCYYIGKER-RTWEESLLACTSKNSSLLSIDNEEEMKFLSIISPSSW-- 62

Query: 86  PQRRKWYFGGTQQSPN-LWVNEDGTNLN 112
                   G  + S +  WV  +G    
Sbjct: 63  -------IGVFRNSSHHPWVTMNGLAFK 83

>2vuv_A Codakine; sugar-binding protein, C-type, lectin, mannose, invertebrate; HET: CIT; 1.3A {Codakia orbicularis} PDB: 2vuz_A* Length = 129

 Score = 63.9 bits (156), Expect = 2e-12
 Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 1/83 (1%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
           CP  W Q+ D CY +  +   +   A+ +C++L   LA  + A E+  +++         
Sbjct: 2   CPDGWTQFLDLCYIYQSAK-ASWASAQSSCQALGGILAEPDTACENEVLIHMCKENGDAG 60

Query: 89  RKWYFGGTQQSPNLWVNEDGTNL 111
               + G Q+    W        
Sbjct: 61  SFGPWLGGQKVGGAWQWSSSGAA 83

>3bdw_A Natural killer cells antigen CD94; NK cells, receptor, glycoprotein, lectin, signal-A transmembrane, immune system receptor; 2.50A {Homo sapiens} SCOP: d.169.1.1 PDB: 3cdg_J 1b6e_A 3cii_G Length = 123

 Score = 63.6 bits (155), Expect = 2e-12
 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 19/90 (21%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIM--YQLFW--- 83
           C + WV YR +CY       KT N+++  C S  S L  + + DE  F+    Q +W   
Sbjct: 5   CQEKWVGYRCNCYFISSEQ-KTWNESRHLCASQKSSLLQLQNTDELDFMSSSQQFYWIGL 63

Query: 84  -QDPQRRKWYFGGTQQSPNLWVNEDGTNLN 112
               +   W          LW   +G+ L+
Sbjct: 64  SYSEEHTAW----------LWE--NGSALS 81

>3ff7_C Killer cell lectin-like receptor subfamily G member 1; KLRG1-cadherin complex, calcium, cell adhesion, cell junction, cell membrane; 1.80A {Homo sapiens} Length = 112

 Score = 63.2 bits (154), Expect = 2e-12
 Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 8/84 (9%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
           CP  W++Y + CY F     K  N +   C + DS L  + D  E   +   L       
Sbjct: 1   CPDRWMKYGNHCYYFSVEE-KDWNSSLEFCLARDSHLLVITDNQEMSLLQVFL-----SE 54

Query: 89  RKWYFGGTQQSPNLWVNEDGTNLN 112
              + G    S   W   DG+ LN
Sbjct: 55  AFSWIGLRNNSGWRWE--DGSPLN 76

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 62.8 bits (153), Expect = 2e-12
 Identities = 13/83 (15%), Positives = 26/83 (31%), Gaps = 9/83 (10%)

Query: 685 KAGDKVRLEC-VAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEY 739
             G+    EC ++         WT  G  +  ++ F    +    IL +      D GE 
Sbjct: 21  LEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEV 80

Query: 740 ICRASNDRSALESSVTISIQAEP 762
           +           S  ++ ++   
Sbjct: 81  VFSVRGLT----SKASLIVRERS 99

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 9/99 (9%), Positives = 20/99 (20%), Gaps = 17/99 (17%)

Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCY-AGGYPNPSYEWFKEDYVQDRLVANLIDP 245
                  K+   +     +       +  C  +    +    W              +  
Sbjct: 6   SGHVGITKRLKTMEVLEGE-----SCSFECVLSHESASDPAMWTVGG--------KTVGS 52

Query: 246 LSDKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 282
            S  + T  G    L++ +     D G            
Sbjct: 53  SSRFQATRQGRKYILVVREA-APSDAGEVVFSVRGLTSK 90

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 9/96 (9%), Positives = 20/96 (20%), Gaps = 17/96 (17%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCY-AGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 521
               K+   +     +       +  C  +    +    W              +   S 
Sbjct: 9   VGITKRLKTMEVLEGE-----SCSFECVLSHESASDPAMWTVGG--------KTVGSSSR 55

Query: 522 KRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 555
            + T  G    L++ +     D G            
Sbjct: 56  FQATRQGRKYILVVREA-APSDAGEVVFSVRGLTSK 90

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 9/54 (16%), Positives = 17/54 (31%), Gaps = 5/54 (9%)

Query: 412 KAGDKVRLEC-VAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKM 460
             G+    EC ++         WT  G  +  ++ F    +    IL +     
Sbjct: 21  LEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAP 74

>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens} Length = 182

 Score = 65.2 bits (159), Expect = 2e-12
 Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 7/85 (8%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
             Q W  ++ + Y F   P KT   A+  C S +S L +V    E  F+     ++    
Sbjct: 49  VSQGWKYFKGNFYYFSLIP-KTWYSAEQFCVSRNSHLTSVTSESEQEFL-----YKTAGG 102

Query: 89  RKWYFGGT-QQSPNLWVNEDGTNLN 112
             ++ G T       W   D T  N
Sbjct: 103 LIYWIGLTKAGMEGDWSWVDDTPFN 127

>2yhf_A C-type lectin domain family 5 member A; immune system; 1.90A {Homo sapiens} Length = 118

 Score = 63.2 bits (154), Expect = 3e-12
 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 7/85 (8%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
           CP+ W  Y+  C+    S   + N+++  CK   S LA VN  ++  F+           
Sbjct: 2   CPKDWEFYQARCFFLSTSE-SSWNESRDFCKGKGSTLAIVNTPEKLKFLQDIT-----DA 55

Query: 89  RKWYFGGTQQSPN-LWVNEDGTNLN 112
            K++ G         W   + +  N
Sbjct: 56  EKYFIGLIYHREEKRWRWINNSVFN 80

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 65.7 bits (159), Expect = 3e-12
 Identities = 20/121 (16%), Positives = 38/121 (31%), Gaps = 5/121 (4%)

Query: 685 KAGDKVRLECVAFG-YPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRA 743
             G   +L C         S  W    + L      +    +LT+ N  +   G  +C  
Sbjct: 20  ALGASRQLTCRLACADRGASVQWRGLDTSLGAV-QSDTGRSVLTVRNASLSAAGTRVCVG 78

Query: 744 SNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPD---VTYSWFRNGE 800
           S      + +V + + A PN         +    ++  T       D   +++S    G+
Sbjct: 79  SCGGRTFQHTVQLLVYAFPNQLTVSPAALVPGDPEVACTAHKVTPVDPNALSFSLLVGGQ 138

Query: 801 L 801
            
Sbjct: 139 E 139

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 41.0 bits (95), Expect = 6e-04
 Identities = 19/171 (11%), Positives = 43/171 (25%), Gaps = 33/171 (19%)

Query: 412 KAGDKVRLECVAFG-YPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMR--GPYF--- 465
             G   +L C         S  W    + L      +    +LT+ N  +   G      
Sbjct: 20  ALGASRQLTCRLACADRGASVQWRGLDTSLGAV-QSDTGRSVLTVRNASLSAAGTRVCVG 78

Query: 466 --------------IKQPTDVVFDLSKRSILNDITLSCYA-GGYP----NPSYEWFKEDY 506
                         +    + +       +  D  ++C A    P      S+       
Sbjct: 79  SCGGRTFQHTVQLLVYAFPNQLTVSPAALVPGDPEVACTAHKVTPVDPNALSFSLLVGGQ 138

Query: 507 VQDRLVANLIDPLSDKRFTLSGGNLIIN-------DPRQVEDRGSYHCKAS 550
             +   A   +   ++       +++          P       + +C+A+
Sbjct: 139 ELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPALYCQAT 189

>3c22_A C-type lectin domain family 4 member K; coiled coil, glycoprotein, membrane, signal-anchor, transmembrane, immune system, sugar binding protein; 1.50A {Homo sapiens} PDB: 3p5g_A* 3p5d_A* 3p5f_A* 3p5e_A* 3p5h_A* 3p5i_A* 3p7g_A* 3p7f_A* 3p7h_A* 3bc7_A* 3bbs_A* 3bc6_A* Length = 156

 Score = 64.4 bits (157), Expect = 3e-12
 Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 7/85 (8%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
             Q W  ++ + Y F   P KT   A+  C S +S L +V    E  F+     ++    
Sbjct: 23  VSQGWKYFKGNFYYFSLIP-KTWYSAEQFCVSRNSHLTSVTSESEQEFL-----YKTAGG 76

Query: 89  RKWYFGGT-QQSPNLWVNEDGTNLN 112
             ++ G T       W   D T  N
Sbjct: 77  LIYWIGLTKAGMEGDWSWVDDTPFN 101

>2ox9_A Collectin placenta 1; C-type lectin, sugar binding protein; HET: GAL NAG FUC; 1.95A {Mus musculus} PDB: 2ox8_A Length = 140

 Score = 63.9 bits (156), Expect = 3e-12
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 6/85 (7%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
           CP HW  + D CY F     +   DAKL C+   S L  +N  +E  +I      ++   
Sbjct: 5   CPPHWKNFTDKCYYFSLEK-EIFEDAKLFCEDKSSHLVFINSREEQQWIKKHTVGRESH- 62

Query: 89  RKWYFGGT-QQSPNLWVNEDGTNLN 112
             W  G T  +  + W   DG+ ++
Sbjct: 63  --W-IGLTDSEQESEWKWLDGSPVD 84

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 65.6 bits (160), Expect = 4e-12
 Identities = 20/107 (18%), Positives = 35/107 (32%), Gaps = 12/107 (11%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF------ENFNRILTIPNVKVEDQGE 738
             G++V + C  F YP  + +W R G  LP + Y             L +      D G 
Sbjct: 31  WEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGN 90

Query: 739 YICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQAD---LTWT 782
           Y C A N          +     P+     +   ++  +    + + 
Sbjct: 91  YNCTAVNRIGQESLEFILVQADTPS---SPSIDQVEPYSSTAQVQFD 134

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 55.2 bits (133), Expect = 1e-08
 Identities = 22/122 (18%), Positives = 39/122 (31%), Gaps = 19/122 (15%)

Query: 173 TYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKED 232
           TY        P         ++ P  V          N + ++C    YP+ +  WF++ 
Sbjct: 2   TYAAASSALVPRGSHMYAPKLQGPVAVYTWEG-----NQVNITCEVFAYPSATISWFRDG 56

Query: 233 YVQDRLVANLIDPLSDKRFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGSIISESV 288
                    L+   +     +        L +    +  D G+Y+C A N+ G   S   
Sbjct: 57  --------QLLPSSNYSNIKIYNTPSASYLEVTPDSE-NDFGNYNCTAVNRIGQ-ESLEF 106

Query: 289 QL 290
            L
Sbjct: 107 IL 108

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 55.2 bits (133), Expect = 1e-08
 Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 19/103 (18%)

Query: 465 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRF 524
            ++ P  V          N + ++C    YP+ +  WF++          L+   +    
Sbjct: 21  KLQGPVAVYTWEG-----NQVNITCEVFAYPSATISWFRDG--------QLLPSSNYSNI 67

Query: 525 TLSGGN----LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
            +        L +    +  D G+Y+C A N+ G   S    L
Sbjct: 68  KIYNTPSASYLEVTPDSE-NDFGNYNCTAVNRIGQ-ESLEFIL 108

>1hq8_A NKG2-D; homodimer, CIS-proline, apoptosis; 1.95A {Mus musculus} SCOP: d.169.1.1 PDB: 1jsk_A 1kcg_A* Length = 123

 Score = 62.8 bits (153), Expect = 4e-12
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 19/91 (20%)

Query: 28  RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL--FW-- 83
            CP +W+ +R++CY+F     KT N ++ +C S +S L  +   +E  F+       W  
Sbjct: 5   PCPNNWICHRNNCYQFFNEE-KTWNQSQASCLSQNSSLLKIYSKEEQDFLKLVKSYHWMG 63

Query: 84  --QDPQRRKWYFGGTQQSPNLWVNEDGTNLN 112
             Q P    W           W   DG++L+
Sbjct: 64  LVQIPANGSW----------QWE--DGSSLS 82

>3ff9_A Killer cell lectin-like receptor subfamily G member 1; natural killer cell receptor KLTG1, glycoprotein, membrane, phosphoprotein, signal-anchor; 1.80A {Mus musculus} PDB: 3ff8_C Length = 115

 Score = 62.4 bits (152), Expect = 4e-12
 Identities = 19/87 (21%), Positives = 26/87 (29%), Gaps = 9/87 (10%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL----FW- 83
           CP  W +    CY F     K  N +   C    S L    D          L    +W 
Sbjct: 2   CPILWTRNGSHCYYFSMEK-KDWNSSLKFCADKGSHLLTFPDNQGVKLFGEYLGQDFYWI 60

Query: 84  --QDPQRRKWYFGGTQQSPNLWVNEDG 108
             ++    +W  GG   S  +  N   
Sbjct: 61  GLRNIDGWRW-EGGPALSLRILTNSLI 86

>1mpu_A NKG2-D type II integral membrane protein; C-type lectin-like domain, immune system; 2.50A {Homo sapiens} SCOP: d.169.1.1 PDB: 1hyr_B Length = 138

 Score = 63.3 bits (154), Expect = 4e-12
 Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 19/91 (20%)

Query: 28  RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL--FW-- 83
            CP++W+ Y+++CY+F     K   +++ +C S ++ L  V   ++   +       W  
Sbjct: 20  PCPKNWICYKNNCYQFFDES-KNWYESQASCMSQNASLLKVYSKEDQDLLKLVKSYHWMG 78

Query: 84  --QDPQRRKWYFGGTQQSPNLWVNEDGTNLN 112
               P    W           W   DG+ L+
Sbjct: 79  LVHIPTNGSW----------QWE--DGSILS 97

>1dv8_A Asialoglycoprotein receptor 1; C-type lectin CRD, signaling protein; 2.30A {Homo sapiens} SCOP: d.169.1.1 Length = 128

 Score = 62.8 bits (153), Expect = 5e-12
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 7/84 (8%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
           CP +WV++  SCY F +S  K   DA   C+  D+ L  V   +E  F+ + +       
Sbjct: 1   CPVNWVEHERSCYWFSRSG-KAWADADNYCRLEDAHLVVVTSWEEQKFVQHHI-----GP 54

Query: 89  RKWYFGGTQQSPNLWVNEDGTNLN 112
              + G   Q+   W   DGT+  
Sbjct: 55  VNTWMGLHDQN-GPWKWVDGTDYE 77

>2h2t_B Low affinity immunoglobulin epsilon FC receptor ( IGE receptor) (FC-epsilon-RII)...; C-type lectin, calcium-bound, lectin domain; 1.30A {Homo sapiens} PDB: 2h2r_A 1t8c_A 1t8d_A Length = 175

 Score = 64.0 bits (156), Expect = 5e-12
 Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 7/85 (8%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
           CP+ W+ ++  CY F K   K    A+  C  ++  L +++  +E  F+  +        
Sbjct: 17  CPEKWINFQRKCYYFGKGT-KQWVHARYACDDMEGQLVSIHSPEEQDFLTKRA-----SH 70

Query: 89  RKWYFGGT-QQSPNLWVNEDGTNLN 112
              + G         ++  DG++++
Sbjct: 71  TGSWIGLRNLDLKGEFIWVDGSHVD 95

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 62.0 bits (151), Expect = 5e-12
 Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 11/97 (11%)

Query: 673 PNNFPKTFPEAPKA--GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRIL 726
              F K    A +   G +VR        P     W + G  +  +  +    +   RIL
Sbjct: 7   GAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRIL 65

Query: 727 TIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPN 763
            I N ++ D  EY   A +++     S  + +++ P+
Sbjct: 66  FINNCQMTDDSEYYVTAGDEK----CSTELFVRSGPS 98

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 19/96 (19%), Positives = 29/96 (30%), Gaps = 16/96 (16%)

Query: 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
           G  F K        + K      +         P    +W+K            I P + 
Sbjct: 7   GAAFAKILDPAY-QVDKGG---RVRFVVELAD-PKLEVKWYKNG--------QEIRPSTK 53

Query: 249 KRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 282
             F   G    L IN+  Q+ D   Y+  A ++  S
Sbjct: 54  YIFEHKGCQRILFINNC-QMTDDSEYYVTAGDEKCS 88

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 19/96 (19%), Positives = 29/96 (30%), Gaps = 16/96 (16%)

Query: 462 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 521
           G  F K        + K      +         P    +W+K            I P + 
Sbjct: 7   GAAFAKILDPAY-QVDKGG---RVRFVVELAD-PKLEVKWYKNG--------QEIRPSTK 53

Query: 522 KRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 555
             F   G    L IN+  Q+ D   Y+  A ++  S
Sbjct: 54  YIFEHKGCQRILFINNC-QMTDDSEYYVTAGDEKCS 88

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 61.5 bits (150), Expect = 5e-12
 Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 5/68 (7%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYI 740
             G+    E      P     W  +G PL  +       +    IL + N ++   GE  
Sbjct: 18  FVGETAHFEIE-LSEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVS 76

Query: 741 CRASNDRS 748
            +A+N +S
Sbjct: 77  FQAANTKS 84

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 13/98 (13%), Positives = 26/98 (26%), Gaps = 17/98 (17%)

Query: 460 MRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 519
           M      K    V  ++                  P+   +W  +           +   
Sbjct: 3   MALIEVEKPLYGV--EVFVGE---TAHFEIELS-EPDVHGQWKLKGQP--------LAAS 48

Query: 520 SDKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 555
            D      G    LI+++  Q+   G    +A+N   +
Sbjct: 49  PDCEIIEDGKKHILILHNC-QLGMTGEVSFQAANTKSA 85

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 12/98 (12%), Positives = 25/98 (25%), Gaps = 17/98 (17%)

Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 246
                  K    V  ++                  P+   +W  +           +   
Sbjct: 3   MALIEVEKPLYGV--EVFVGE---TAHFEIELS-EPDVHGQWKLKGQP--------LAAS 48

Query: 247 SDKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 282
            D      G    LI+++  Q+   G    +A+N   +
Sbjct: 49  PDCEIIEDGKKHILILHNC-QLGMTGEVSFQAANTKSA 85

>1jwi_B Platelet aggregation inducer; domain swapping, C-type lectin, toxin; 2.00A {Bitis arietans} SCOP: d.169.1.1 PDB: 1uex_B Length = 125

 Score = 62.4 bits (152), Expect = 6e-12
 Identities = 24/90 (26%), Positives = 33/90 (36%), Gaps = 5/90 (5%)

Query: 26  ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDLANVNDADEHGFIMYQLFW 83
           +  C   W  Y+  CY+  K   KT  DA+  CK L     L +VN  +E  FI      
Sbjct: 1   DEGCLPDWSSYKGHCYKVFKVE-KTWADAEKFCKELVNGGHLMSVNSREEGEFISKLALE 59

Query: 84  QDPQRRKWYFGGT-QQSPNLWVNEDGTNLN 112
           +      W  G +           DG  L+
Sbjct: 60  KMRIVLVW-IGLSHFWRICPLRWTDGARLD 88

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 61.6 bits (150), Expect = 7e-12
 Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 9/80 (11%)

Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYICR 742
           G    L CV      P   W    + L     +    E     L + N++ +D G Y C 
Sbjct: 23  GGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCS 81

Query: 743 ASNDRSALESSVTISIQAEP 762
             +      +S T+++ A P
Sbjct: 82  FGDQ----TTSATLTVTALP 97

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 17/95 (17%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
             F +   D+             TL C       P  +W   +        N++ P    
Sbjct: 9   VRFQEALKDLEVLEGGA-----ATLRCVLSSVAAP-VKWCYGN--------NVLRPGDKY 54

Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 282
                G    L++ + R  +D G Y C   ++  S
Sbjct: 55  SLRQEGAMLELVVRNLR-PQDSGRYSCSFGDQTTS 88

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 17/95 (17%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
             F +   D+             TL C       P  +W   +        N++ P    
Sbjct: 9   VRFQEALKDLEVLEGGA-----ATLRCVLSSVAAP-VKWCYGN--------NVLRPGDKY 54

Query: 523 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 555
                G    L++ + R  +D G Y C   ++  S
Sbjct: 55  SLRQEGAMLELVVRNLR-PQDSGRYSCSFGDQTTS 88

>3c8j_A Natural killer cell receptor LY49C; MHC, virus, immune system; 2.60A {Mus musculus} SCOP: d.169.1.1 PDB: 3c8k_D 1p4l_D 1ja3_A 1p1z_D Length = 203

 Score = 64.2 bits (156), Expect = 8e-12
 Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 7/86 (8%)

Query: 28  RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQ 87
           R  ++W  Y   CY F+ +   T +  K NC+     +  + D DE  F+   +      
Sbjct: 79  RGVKYWFCYSTKCYYFIMNK-TTWSGCKANCQHYGVPILKIEDEDELKFLQRHV-----I 132

Query: 88  RRKWYFGGTQQSPN-LWVNEDGTNLN 112
              ++ G +       W   D     
Sbjct: 133 PGNYWIGLSYDKKKKEWAWIDNGPSK 158

>1qdd_A Lithostathine; pancreatic stone inhibitor, metal binding protein; HET: SIA NDG GAL; 1.30A {Homo sapiens} SCOP: d.169.1.1 PDB: 1lit_A Length = 144

 Score = 62.8 bits (153), Expect = 8e-12
 Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 3/86 (3%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDS-DLANVNDADEHGFIMYQLFWQDPQ 87
           CP+    YR  CY F +   +T  DA L C++++S +L +V    E  F+   +      
Sbjct: 14  CPEGTNAYRSYCYYFNEDR-ETWVDADLYCQNMNSGNLVSVLTQAEGAFVASLIKESGTD 72

Query: 88  RRKWYFGGT-QQSPNLWVNEDGTNLN 112
               + G    +    W    G+ ++
Sbjct: 73  DFNVWIGLHDPKKNRAWHWSSGSLVS 98

>2e3x_C Coagulation factor X-activating enzyme light CHAI; disintegrin, metalloproteinase, C-type lectin, hydrolase, BL clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia russellii siamensis} Length = 122

 Score = 61.7 bits (150), Expect = 9e-12
 Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 27  LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDLANVNDADEHGFIMYQLFWQ 84
           L CP  W+ Y   CY+      K   DA+  C      S L +++  +E  F+   L  +
Sbjct: 1   LDCPSGWLSYEQHCYKGFNDL-KNWTDAEKFCTEQKKGSHLVSLHSREEEKFV-VNLISE 58

Query: 85  DPQRRKWYFGGT-QQSPNLWVNEDGTNLN 112
           + +    + G             D  N+ 
Sbjct: 59  NLEYPATWIGLGNMWKDCRMEWSDRGNVK 87

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 61.2 bits (149), Expect = 1e-11
 Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 9/70 (12%)

Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF--------ENFNRILTIPNVKVEDQGE 738
           GD+V +             W + G  L R   F        +    IL   +V  ED+G 
Sbjct: 23  GDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGR 81

Query: 739 YICRASNDRS 748
           Y    +  + 
Sbjct: 82  YQVITNGGQC 91

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 15/95 (15%), Positives = 24/95 (25%), Gaps = 13/95 (13%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
              +    D    +  R     + ++            W K        +       +  
Sbjct: 9   VLIVTPLEDQQVFVGDR-----VEMAVEVSE-EGAQVMWMKNG----VELTREDSFKARY 58

Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 282
           RF   G    LI +D    EDRG Y    +     
Sbjct: 59  RFKKDGKRHILIFSDV-VQEDRGRYQVITNGGQCE 92

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 15/95 (15%), Positives = 24/95 (25%), Gaps = 13/95 (13%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
              +    D    +  R     + ++            W K        +       +  
Sbjct: 9   VLIVTPLEDQQVFVGDR-----VEMAVEVSE-EGAQVMWMKNG----VELTREDSFKARY 58

Query: 523 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 555
           RF   G    LI +D    EDRG Y    +     
Sbjct: 59  RFKKDGKRHILIFSDV-VQEDRGRYQVITNGGQCE 92

>3ubu_B Agglucetin subunit beta-2; platelet inhibiting, agkisacucetin, dimer, toxin, C-type LEC GPIB inhibitor, GPIB binding; 1.91A {Deinagkistrodon acutus} Length = 126

 Score = 62.0 bits (151), Expect = 1e-11
 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 5/87 (5%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNC--KSLDSDLANVNDADEHGFIMYQLFWQDP 86
           CP  W  Y   CY  VK   KT +DA+  C  +     L +V+  +E  F+++  +    
Sbjct: 4   CPLRWSAYEGHCYLVVKEK-KTWDDAEKFCTEQRKGGHLVSVHSREEADFLVHLAYPILD 62

Query: 87  QRRKWYFGGT-QQSPNLWVNEDGTNLN 112
               W  G +   +       DGT L+
Sbjct: 63  LSLIW-MGLSNMWNDCKREWSDGTKLD 88

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 60.8 bits (148), Expect = 1e-11
 Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 5/75 (6%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYI 740
            AG     E            W R GS +  +  +    E     LT+  V   DQG Y 
Sbjct: 21  AAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYA 79

Query: 741 CRASNDRSALESSVT 755
             A + +   +  V 
Sbjct: 80  VIAGSSKVKFDLKVI 94

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 41.2 bits (97), Expect = 9e-05
 Identities = 16/102 (15%), Positives = 24/102 (23%), Gaps = 18/102 (17%)

Query: 183 PDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANL 242
           P K P    F K+P  V                            W +          + 
Sbjct: 3   PGKKPV-SAFSKKPRSVEVAAGS-----PAVFEAETER-AGVKVRWQRGG--------SD 47

Query: 243 IDPLSDKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 282
           I   +       G    L + +     D+GSY   A +    
Sbjct: 48  ISASNKYGLATEGTRHTLTVREV-GPADQGSYAVIAGSSKVK 88

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 13/95 (13%), Positives = 21/95 (22%), Gaps = 17/95 (17%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
             F K+P  V                            W +          + I   +  
Sbjct: 9   SAFSKKPRSVEVAAGS-----PAVFEAETER-AGVKVRWQRGG--------SDISASNKY 54

Query: 523 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 555
                G    L + +     D+GSY   A +    
Sbjct: 55  GLATEGTRHTLTVREV-GPADQGSYAVIAGSSKVK 88

>1htn_A Tetranectin; plasminogen binding, kringle 4, alpha-helical coiled coil, C-type lectin, carbohydrate recognition domain; 2.80A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1 Length = 182

 Score = 62.9 bits (153), Expect = 1e-11
 Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 3/85 (3%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
           C +   +    C+       KT ++A  +C S    L+      E+  +   L       
Sbjct: 51  CLKGT-KVHMKCFLAFTQT-KTFHEASEDCISRGGTLSTPQTGSENDALYEYLRQSVGNE 108

Query: 89  RKWYFGGT-QQSPNLWVNEDGTNLN 112
            + + G     +   WV+  G  + 
Sbjct: 109 AEIWLGLNDMAAEGTWVDMTGARIA 133

>1wmz_A Lectin CEL-I, N-acetyl-D-galactosamine-specific C-type; C-type lectin, N-acetylgalactosamine, invertebrate, sugar binding protein; HET: NGA A2G; 1.70A {Cucumaria echinata} SCOP: d.169.1.1 PDB: 1wmy_A* Length = 140

 Score = 61.7 bits (150), Expect = 1e-11
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 9/93 (9%)

Query: 28  RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD-------SDLANVNDADEHGFIMYQ 80
           +CP  W    D CYRF  +   T  +A   C S         SDL +V+ A E  ++   
Sbjct: 2   QCPTDWEAEGDHCYRFFNTL-TTWENAHHECVSYSCSTLNVRSDLVSVHSAAEQAYVFNY 60

Query: 81  LFWQDPQRRKWYFGGT-QQSPNLWVNEDGTNLN 112
               D Q  + + G   + +   ++  DG+ + 
Sbjct: 61  WRGIDSQAGQLWIGLYDKYNEGDFIWTDGSKVG 93

>1tn3_A Tetranectin; plasminogen binding, kringle 4, C-type lectin, carbohydrate recognition domain; 2.00A {Homo sapiens} SCOP: d.169.1.1 PDB: 1rjh_A 3l9j_C Length = 137

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 3/89 (3%)

Query: 25  LELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQ 84
           L+  C +   +    C+       KT ++A  +C S    L+      E+  +   L   
Sbjct: 2   LQTVCLKGT-KVHMKCFLAFTQT-KTFHEASEDCISRGGTLSTPQTGSENDALYEYLRQS 59

Query: 85  DPQRRKWYFGGT-QQSPNLWVNEDGTNLN 112
                + + G     +   WV+  G  + 
Sbjct: 60  VGNEAEIWLGLNDMAAEGTWVDMTGARIA 88

>3gpr_D Rhodocetin subunit delta; disulfide bond, lectin, secreted, toxin, cell adhesion; 3.20A {Calloselasma rhodostoma} Length = 124

 Score = 61.3 bits (149), Expect = 2e-11
 Identities = 23/87 (26%), Positives = 32/87 (36%), Gaps = 5/87 (5%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDLANVNDADEHGFIMYQLFWQDP 86
           CP HW  Y   CYR      KT  DA+  C +    S LA+++  +E  F+         
Sbjct: 1   CPLHWSSYNGYCYRVFSEL-KTWEDAESFCYAQHKGSRLASIHSREEEAFVGKLASQTLK 59

Query: 87  QRRKWYFGGT-QQSPNLWVNEDGTNLN 112
               W  G     +   W   D   L+
Sbjct: 60  YTSMW-LGLNNAWAACKWEWSDDAKLD 85

>1umr_C Convulxin beta, CVX beta; lectin, C-type lectin, platelet, sugar-binding protein, activator, snake venom; 2.40A {Crotalus durissus terrificus} SCOP: d.169.1.1 PDB: 1uos_B Length = 125

 Score = 61.3 bits (149), Expect = 2e-11
 Identities = 22/87 (25%), Positives = 30/87 (34%), Gaps = 5/87 (5%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS--LDSDLANVNDADEHGFIMYQLFWQDP 86
           CP HW  Y   CY+  K    T  DA+  C      S L + +  +E  F++        
Sbjct: 4   CPSHWSSYDRYCYKVFKQE-MTWADAEKFCTQQHTGSHLVSFHSTEEVDFVVKMTHQSLK 62

Query: 87  QRRKWYFGGT-QQSPNLWVNEDGTNLN 112
               W  G     +   W   DGT   
Sbjct: 63  STFFW-IGANNIWNKCNWQWSDGTKPE 88

>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A Length = 148

 Score = 61.6 bits (150), Expect = 2e-11
 Identities = 13/87 (14%), Positives = 25/87 (28%), Gaps = 5/87 (5%)

Query: 27  LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDP 86
           L      +   D  +          +  K  C     ++A     +E+  I         
Sbjct: 25  LSLQGSMLSVGDKVFSTNGQS-VNFDTIKEMCTRAGGNIAVPRTPEENEAIASIA---KK 80

Query: 87  QRRKWYFGGT-QQSPNLWVNEDGTNLN 112
                Y G    Q+P  +   DG +++
Sbjct: 81  YNNYVYLGMIEDQTPGDFHYLDGASVS 107

>3bx4_B Aggretin beta chain; toxin; 1.70A {Agkistrodon rhodostoma} PDB: 2vrp_B Length = 146

 Score = 61.7 bits (150), Expect = 2e-11
 Identities = 31/108 (28%), Positives = 41/108 (37%), Gaps = 6/108 (5%)

Query: 9   FIFVSFHS-VFSQTIDELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDL 65
           FIFVSF   V   ++      CP  W  Y   CY+    P K   DA+  CK     S L
Sbjct: 4   FIFVSFGLLVVFLSLSGTGADCPSGWSSYEGHCYKPFNEP-KNWADAERFCKLQPKHSHL 62

Query: 66  ANVNDADEHGFIMYQLFWQDPQRRKWYFGGT-QQSPNLWVNEDGTNLN 112
            +   A+E  F++     +      W  G +       W   DG  LN
Sbjct: 63  VSFQSAEEADFVVKLTRPRLKANLVW-MGLSNIWHGCNWQWSDGARLN 109

>1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin, C-type lectin, alpha-helical coiled coil, carbohydrate recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A* 3ikr_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A* 2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A* 1b08_A 3g84_A* ... Length = 177

 Score = 62.4 bits (152), Expect = 2e-11
 Identities = 11/88 (12%), Positives = 29/88 (32%), Gaps = 5/88 (5%)

Query: 26  ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQD 85
           ++    +     +  ++      K   +A+L C      LA+   A E+  +   +    
Sbjct: 52  KVELFPNGQSVGEKIFKTAGFV-KPFTEAQLLCTQAGGQLASPRSAAENAALQQLV---V 107

Query: 86  PQRRKWYFGGT-QQSPNLWVNEDGTNLN 112
            +    +   T  ++   +    G +L 
Sbjct: 108 AKNEAAFLSMTDSKTEGKFTYPTGESLV 135

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 64.1 bits (155), Expect = 2e-11
 Identities = 33/207 (15%), Positives = 61/207 (29%), Gaps = 50/207 (24%)

Query: 597 PGVNYYWARDYFPNFVEEDKRVFV----SYDGALYFSALEQIDAGNYSCNVQSKVSDTGR 652
             V +Y++    P    +++   V      DG+L    +++ D G Y+C ++ K  ++  
Sbjct: 53  EYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKN-ESMV 111

Query: 653 NGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVP---SYNWTRR 709
                 L V P                     + GD  ++ C             NW   
Sbjct: 112 MKKPVELWVLPEEPRDL-------------RVRVGDTTQMRCSIQSTEEKRVTKVNWMFS 158

Query: 710 GSPLPRNAYFENF----------------NRI------------LTIPNVKVEDQGEYIC 741
                      ++                NR+            + +  VK  DQG Y C
Sbjct: 159 SGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTC 218

Query: 742 RASNDRSALESSVTIS-IQAEPNFTIP 767
                +     ++ +  +Q E   TI 
Sbjct: 219 SIYVGKLESRKTIVLHVVQDEFQRTIS 245

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 58.3 bits (140), Expect = 2e-09
 Identities = 20/154 (12%), Positives = 39/154 (25%), Gaps = 33/154 (21%)

Query: 686 AGDKVRLECV---AFGYPVPSYNWTRRGSPLPRNAYFENF------------NRI----- 725
            G+ V + CV        V   +W         + Y   +            NR      
Sbjct: 19  VGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGD 78

Query: 726 -------LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQAD 778
                  L + +V+  D+G Y C       ++     + +   P     L    +     
Sbjct: 79  TFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLR---VRVGDT 135

Query: 779 LTWTCEAFGVPD---VTYSWFRNGELGHQMTDLL 809
               C      +      +W  +     +   +L
Sbjct: 136 TQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVL 169

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 47.9 bits (113), Expect = 5e-06
 Identities = 31/224 (13%), Positives = 63/224 (28%), Gaps = 48/224 (21%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCY---AGGYPNPSYEWFKEDYVQDRLVANLI--- 243
           P        +   +        + + C             +W       D     L    
Sbjct: 6   PGLTVSSPQLRVHVG-----ESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYS 60

Query: 244 -DPLSDKRF----------TLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE-SVQLA 291
              +   RF            + G+L++ D  Q  D G Y C+   K  S++ +  V+L 
Sbjct: 61  NLSVPTGRFQNRSHLVGDTFHNDGSLLLQDV-QKADEGIYTCEIRLKNESMVMKKPVELW 119

Query: 292 ---------FGFIGE-------FNLKRAPEIGNQNWGKAMFCDPP-------TNYPGVNY 328
                       +G+               +   NW  +              +      
Sbjct: 120 VLPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGK 179

Query: 329 YWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQS 372
           + +   F N V+    +    DG++    +++ D G Y+C++  
Sbjct: 180 FQSLGRFRNRVDLTGDI-SRNDGSIKLQTVKESDQGIYTCSIYV 222

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 47.9 bits (113), Expect = 5e-06
 Identities = 31/224 (13%), Positives = 63/224 (28%), Gaps = 48/224 (21%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCY---AGGYPNPSYEWFKEDYVQDRLVANLI--- 516
           P        +   +        + + C             +W       D     L    
Sbjct: 6   PGLTVSSPQLRVHVG-----ESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYS 60

Query: 517 -DPLSDKRF----------TLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE-SVQLA 564
              +   RF            + G+L++ D  Q  D G Y C+   K  S++ +  V+L 
Sbjct: 61  NLSVPTGRFQNRSHLVGDTFHNDGSLLLQDV-QKADEGIYTCEIRLKNESMVMKKPVELW 119

Query: 565 ---------FGFIGE-------FNLKRAPEIGNQNWGKAMFCDPP-------TNYPGVNY 601
                       +G+               +   NW  +              +      
Sbjct: 120 VLPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGK 179

Query: 602 YWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQS 645
           + +   F N V+    +    DG++    +++ D G Y+C++  
Sbjct: 180 FQSLGRFRNRVDLTGDI-SRNDGSIKLQTVKESDQGIYTCSIYV 222

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 46.8 bits (110), Expect = 1e-05
 Identities = 30/247 (12%), Positives = 62/247 (25%), Gaps = 73/247 (29%)

Query: 324 PGVNYYWARDYFPNFVEEDKRVFV----SYDGALYFSALEQIDAGNYSCNVQSKVSDTGR 379
             V +Y++    P    +++   V      DG+L    +++ D G Y+C ++ K  ++  
Sbjct: 53  EYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKN-ESMV 111

Query: 380 NGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVP---SYNWTRR 436
                 L V P                     + GD  ++ C             NW   
Sbjct: 112 MKKPVELWVLPEEPRDL-------------RVRVGDTTQMRCSIQSTEEKRVTKVNWMFS 158

Query: 437 GSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPN 496
                                                          +  LS  +     
Sbjct: 159 SGSHTE----------------------------------------EETVLSYDSNMRSG 178

Query: 497 PSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI 556
                      ++R+        +D       G++ +    +  D+G Y C         
Sbjct: 179 KFQSL---GRFRNRVDLTGDISRND-------GSIKLQTV-KESDQGIYTCSIYVGKLE- 226

Query: 557 ISESVQL 563
             +++ L
Sbjct: 227 SRKTIVL 233

>1jwi_A Bitiscetin; domain swapping, C-type lectin, toxin; 2.00A {Bitis arietans} SCOP: d.169.1.1 PDB: 1uex_A Length = 131

 Score = 60.9 bits (148), Expect = 2e-11
 Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 7/89 (7%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
           C   W  Y+  CY+  K    T  DA+  C      LA+++  +E  F+  +L  Q   +
Sbjct: 4   CLPDWSSYKGHCYKVFKKV-GTWEDAEKFCVENSGHLASIDSKEEADFV-TKLASQTLTK 61

Query: 89  RKWYF--GGTQQSPN---LWVNEDGTNLN 112
             +    G   +S          DG+++ 
Sbjct: 62  FVYDAWIGLRDESKTQQCSPQWTDGSSVV 90

>1j34_B Coagulation factor IX-binding protein B chain; magnesium ION, calcium ION, GLA domain, protein binding/blood clotting complex; HET: CGU; 1.55A {Trimeresurus flavoviridis} SCOP: d.169.1.1 PDB: 1bj3_B 1ixx_B* 1j35_B* 1x2t_B* 1x2w_B 1wt9_B 1iod_B 1y17_B Length = 123

 Score = 60.5 bits (147), Expect = 3e-11
 Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 5/87 (5%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDS--DLANVNDADEHGFIMYQLFWQDP 86
           CP  W  Y   CY+    P K   DA+  C    +   L +   ++E  F++   F    
Sbjct: 2   CPSDWSSYEGHCYKPFSEP-KNWADAENFCTQQHAGGHLVSFQSSEEADFVVKLAFQTFG 60

Query: 87  QRRKWYFGGT-QQSPNLWVNEDGTNLN 112
               W  G +   +   W   +   L 
Sbjct: 61  HSIFW-MGLSNVWNQCNWQWSNAAMLR 86

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 60.8 bits (147), Expect = 3e-11
 Identities = 20/108 (18%), Positives = 37/108 (34%), Gaps = 13/108 (12%)

Query: 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPN---PSYEWFKEDYVQDRLVANL--- 242
           G  FI++P      + +     DIT             P+ +WFK  ++     A     
Sbjct: 7   GILFIEKPQGGTVKVGE-----DITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQ 61

Query: 243 IDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
           +    ++   +    + I    +    G+Y C+ + K     S S  L
Sbjct: 62  LKETFERHSRVYTFEMQIIKA-KDNFAGNYRCEVTYKDKF-DSCSFDL 107

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 60.8 bits (147), Expect = 3e-11
 Identities = 20/108 (18%), Positives = 37/108 (34%), Gaps = 13/108 (12%)

Query: 462 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPN---PSYEWFKEDYVQDRLVANL--- 515
           G  FI++P      + +     DIT             P+ +WFK  ++     A     
Sbjct: 7   GILFIEKPQGGTVKVGE-----DITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQ 61

Query: 516 IDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
           +    ++   +    + I    +    G+Y C+ + K     S S  L
Sbjct: 62  LKETFERHSRVYTFEMQIIKA-KDNFAGNYRCEVTYKDKF-DSCSFDL 107

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 50.4 bits (120), Expect = 9e-08
 Identities = 17/104 (16%), Positives = 29/104 (27%), Gaps = 21/104 (20%)

Query: 680 FPEAPK-----AGDKVRLECVAFGYPV---PSYNWTR---------RGSPLPRNAYFENF 722
           F E P+      G+ +          +   P+  W +          G  L     FE  
Sbjct: 10  FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERH 69

Query: 723 NRI----LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEP 762
           +R+    + I   K    G Y C  +        S  + +    
Sbjct: 70  SRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHEST 113

>2kv3_A Regenerating islet-derived protein 4; GISP, C-type lectin, REG IV, disulfide bond, glycoPro lectin, secreted, sugar binding protein; NMR {Homo sapiens} Length = 131

 Score = 60.9 bits (148), Expect = 3e-11
 Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 5/87 (5%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDLANVNDADEHGFIMYQLFWQDP 86
           C   W  ++ +CY + +   +  +DA+L C+S    + LA++    E   I   +     
Sbjct: 3   CAPGWFYHKSNCYGYFRKL-RNWSDAELECQSYGNGAHLASILSLKEASTIAEYISGYQR 61

Query: 87  QRRKWYFGGT-QQSPNLWVNEDGTNLN 112
            +  W  G    Q    W   DG    
Sbjct: 62  SQSIW-IGLHDPQKRQQWQWIDGAMYL 87

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 60.1 bits (146), Expect = 3e-11
 Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 8/87 (9%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYI 740
           KA ++   +C        +  W + G  +  +             L I +V+ ED+G+Y 
Sbjct: 21  KAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYT 79

Query: 741 CRASNDRSALESSVTISIQAEPNFTIP 767
                   +L + +      E   + P
Sbjct: 80  FVPDGYALSLSAKLNF---LEIKVSGP 103

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 45.1 bits (107), Expect = 5e-06
 Identities = 17/97 (17%), Positives = 30/97 (30%), Gaps = 21/97 (21%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
              ++   D+    ++          C        + +W+K            + P   K
Sbjct: 9   LEVLQDIADLTVKAAE-----QAVFKCEVSD-EKVTGKWYKNG--------VEVRP--SK 52

Query: 250 RFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGS 282
           R T+S       L+I+D  + ED G Y         S
Sbjct: 53  RITISHVGRFHKLVIDDV-RPEDEGDYTFVPDGYALS 88

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 45.1 bits (107), Expect = 5e-06
 Identities = 17/97 (17%), Positives = 30/97 (30%), Gaps = 21/97 (21%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
              ++   D+    ++          C        + +W+K            + P   K
Sbjct: 9   LEVLQDIADLTVKAAE-----QAVFKCEVSD-EKVTGKWYKNG--------VEVRP--SK 52

Query: 523 RFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGS 555
           R T+S       L+I+D  + ED G Y         S
Sbjct: 53  RITISHVGRFHKLVIDDV-RPEDEGDYTFVPDGYALS 88

>3g8l_A Lectin-related NK cell receptor LY49L1; natural killer cell receptor, immune system; 2.50A {Mus musculus} Length = 190

 Score = 62.2 bits (151), Expect = 3e-11
 Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 7/85 (8%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
             ++W  Y   CY FV    KT +  K  C+     L  +++ DE  F+   +       
Sbjct: 67  FEKYWFCYGIKCYYFVMDR-KTWSGCKQTCQISSLSLLKIDNEDELKFLKLLV-----PS 120

Query: 89  RKWYFGGT-QQSPNLWVNEDGTNLN 112
             ++ G +       W   +     
Sbjct: 121 DSYWIGLSYDNKKKDWAWINNGPSK 145

>1c3a_B Flavocetin-A: beta subunit; C-type lectin-like domains, membrane protein; 2.50A {Trimeresurus flavoviridis} SCOP: d.169.1.1 PDB: 1v4l_B Length = 125

 Score = 60.5 bits (147), Expect = 3e-11
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 5/87 (5%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDLANVNDADEHGFIMYQLFWQDP 86
           CP  W  Y + CY+  +       DA+  C      S L + + ++E  F+  + F    
Sbjct: 4   CPLGWSSYDEHCYQVFQQK-MNWEDAEKFCTQQHKGSHLVSFHSSEEVDFVTSKTFPILK 62

Query: 87  QRRKWYFGGT-QQSPNLWVNEDGTNLN 112
               W  G +   +       DGT L+
Sbjct: 63  YDFVW-IGLSNVWNECTKEWSDGTKLD 88

>1fvu_B Botrocetin beta chain; VON WILLBRAND factor modulator, C-type lectin, metal- binding, loop exchanged dimer, toxin; 1.80A {Bothrops jararaca} SCOP: d.169.1.1 PDB: 1ijk_C 1u0n_C 1u0o_B Length = 125

 Score = 60.1 bits (146), Expect = 4e-11
 Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 5/87 (5%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCK--SLDSDLANVNDADEHGFIMYQLFWQDP 86
           CP  W  Y   CYRF K      +DA+  C      + L +    +E  F+         
Sbjct: 2   CPPDWSSYEGHCYRFFKEW-MHWDDAEEFCTEQQTGAHLVSFQSKEEADFVRSLTSEMLK 60

Query: 87  QRRKWYFGGT-QQSPNLWVNEDGTNLN 112
               W  G +   +   +   DG   +
Sbjct: 61  GDVVW-IGLSDVWNKCRFEWTDGMEFD 86

>1ukm_B EMS16 B chain, EMS16 subunit B; domain swapping, C-type lectin, toxin; HET: NAG; 1.90A {Echis multisquamatus} SCOP: d.169.1.1 PDB: 1v7p_B* Length = 128

 Score = 60.2 bits (146), Expect = 4e-11
 Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 5/87 (5%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDLANVNDADEHGFIMYQLFWQDP 86
           CP  W  +   CY+  +   K   +A+  C      S LA+++ ++E  F+         
Sbjct: 1   CPLGWSSFDQHCYKVFEPV-KNWTEAEEICMQQHKGSRLASIHSSEEEAFVSKLASKALK 59

Query: 87  QRRKWYFGGT-QQSPNLWVNEDGTNLN 112
               W  G         W   D    +
Sbjct: 60  FTSMW-IGLNNPWKDCKWEWSDNARFD 85

>3ubu_A Agglucetin subunit alpha-1; platelet inhibiting, agkisacucetin, dimer, toxin, C-type LEC GPIB inhibitor, GPIB binding; 1.91A {Deinagkistrodon acutus} Length = 131

 Score = 60.1 bits (146), Expect = 4e-11
 Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 11/94 (11%)

Query: 26  ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDLANVNDADEHGFIMYQLFW 83
           ++ C   W  Y  SCYR  K   KT +DA+  C        L ++  A E  F+   +  
Sbjct: 1   DVDCLPGWSAYDQSCYRVFKLL-KTWDDAEKFCTERPKGGHLVSIESAGERDFVAQLVSE 59

Query: 84  QDPQRRKWYFGGTQQSPN-----LWVNEDGTNLN 112
                  W  G   QS        W   DG++++
Sbjct: 60  NKQTDNVW-LGLKIQSKGQQCSTEWT--DGSSVS 90

>1egg_A Macrophage mannose receptor; C-type lectin, sugar binding protein; 2.30A {Homo sapiens} SCOP: d.169.1.1 PDB: 1egi_A Length = 147

 Score = 60.5 bits (147), Expect = 4e-11
 Identities = 18/91 (19%), Positives = 41/91 (45%), Gaps = 6/91 (6%)

Query: 28  RCPQHWV--QYRDSCYRFVKSPLKTR---NDAKLNCKSLDSDLANVNDADEHGFIMYQLF 82
           +CP+ W        C++        +    +++  C++L  DLA++N+ +E   I   + 
Sbjct: 4   KCPEDWGASSRTSLCFKLYAKGKHEKKTWFESRDFCRALGGDLASINNKEEQQTIWRLIT 63

Query: 83  WQDPQRRKWYFGGTQQSPN-LWVNEDGTNLN 112
                 + ++ G T  SP+  +   DG+ ++
Sbjct: 64  ASGSYHKLFWLGLTYGSPSEGFTWSDGSPVS 94

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 58.9 bits (143), Expect = 6e-11
 Identities = 13/80 (16%), Positives = 22/80 (27%), Gaps = 9/80 (11%)

Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYICR 742
                  C    +P  +  W +    L  +       E     LTI  ++  D   Y C 
Sbjct: 23  KGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCD 81

Query: 743 ASNDRSALESSVTISIQAEP 762
               +    S   + +Q   
Sbjct: 82  IGQAQ----SRAQLLVQGRR 97

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 12/95 (12%), Positives = 25/95 (26%), Gaps = 17/95 (17%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
             F ++ T++  +            +C     P  +  W K            +      
Sbjct: 9   NCFTEELTNLQVEEKG-----TAVFTCKTEH-PAATVTWRKGL--------LELRASGKH 54

Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 282
           + +  G    L I+   +  D  +Y C        
Sbjct: 55  QPSQEGLTLRLTISAL-EKADSDTYTCDIGQAQSR 88

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 12/95 (12%), Positives = 25/95 (26%), Gaps = 17/95 (17%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
             F ++ T++  +            +C     P  +  W K            +      
Sbjct: 9   NCFTEELTNLQVEEKG-----TAVFTCKTEH-PAATVTWRKGL--------LELRASGKH 54

Query: 523 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 555
           + +  G    L I+   +  D  +Y C        
Sbjct: 55  QPSQEGLTLRLTISAL-EKADSDTYTCDIGQAQSR 88

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 62.1 bits (150), Expect = 7e-11
 Identities = 27/147 (18%), Positives = 47/147 (31%), Gaps = 31/147 (21%)

Query: 686 AGDKVRLECVAFGYP-VPSYNWTRRGSPLPRNAYFENFNRI------------------- 725
            G  V L+C   G        W        R        +                    
Sbjct: 14  RGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQL 73

Query: 726 -----LTIPNVKVEDQGEYICRASNDRSAL-ESSVTISIQAEPNFTI----PLTDKHMDN 775
                L +   +V D+ +Y+C      +   E++  +++ A+P  T       T   M++
Sbjct: 74  DSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMED 133

Query: 776 QADLTWTCEAF-GVPDVTYSWFRNGEL 801
            A    TC +  G P    +W+RNG+ 
Sbjct: 134 SAQEIATCNSRNGNPAPKITWYRNGQR 160

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 54.4 bits (130), Expect = 3e-08
 Identities = 24/193 (12%), Positives = 48/193 (24%), Gaps = 37/193 (19%)

Query: 591 DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDT 650
           +   +   V  +  R   P          +   G L  +  +  D  +Y C V++  + T
Sbjct: 51  EMQGSELQVTMHDTRGRSP-------PYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGT 103

Query: 651 GRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF-GYPVPSYNWTRR 709
                   +   P    +  +   N         +   +    C +  G P P   W R 
Sbjct: 104 AEATARLNVFAKP----EATEVSPNKGTLSVM--EDSAQEIATCNSRNGNPAPKITWYRN 157

Query: 710 GSPLPRNAYFENFNRI-----------------LTIPNVKVEDQGEYICRASN------D 746
           G  L           +                 L +   K +    + C A         
Sbjct: 158 GQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRH 217

Query: 747 RSALESSVTISIQ 759
                 +  +++ 
Sbjct: 218 GRLDSPTFHLTLH 230

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 21/148 (14%), Positives = 40/148 (27%), Gaps = 14/148 (9%)

Query: 318 DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDT 377
           +   +   V  +  R   P          +   G L  +  +  D  +Y C V++  + T
Sbjct: 51  EMQGSELQVTMHDTRGRSP-------PYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGT 103

Query: 378 GRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF-GYPVPSYNWTRR 436
                   +   P    +  +   N         +   +    C +  G P P   W R 
Sbjct: 104 AEATARLNVFAKP----EATEVSPNKGTLSVM--EDSAQEIATCNSRNGNPAPKITWYRN 157

Query: 437 GSPLPRNAYFENFNRILTIPNVKMRGPY 464
           G  L           + +    +  G  
Sbjct: 158 GQRLEVPVEMNPEGYMTSRTVREASGLL 185

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 26/216 (12%), Positives = 53/216 (24%), Gaps = 67/216 (31%)

Query: 413 AGDKVRLECVAFGYP-VPSYNWTRRGSPLPRNAYFENFNRI------------------- 452
            G  V L+C   G        W        R        +                    
Sbjct: 14  RGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQL 73

Query: 453 -----LTIPNVKMR--GPYF-------------------IKQPTDVVFDLSKRSIL---- 482
                L +   ++     Y                      +P       +K ++     
Sbjct: 74  DSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMED 133

Query: 483 -NDITLSCYA-GGYPNPSYEWFKE--------DYVQDRLVANLIDPLSDKRFTLSGGNLI 532
                 +C +  G P P   W++         +   +  + +     +    +L+   L 
Sbjct: 134 SAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLT-STLY 192

Query: 533 INDPRQVEDRGSYHCKAS-----NKFGSIISESVQL 563
           +   R+ +   S+HC A       + G + S +  L
Sbjct: 193 LR-LRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHL 227

>1oz7_B Echicetin B-chain; platelet aggregation, dimer, toxin; 2.40A {Echis carinatus} SCOP: d.169.1.1 Length = 123

 Score = 59.3 bits (144), Expect = 7e-11
 Identities = 21/87 (24%), Positives = 29/87 (33%), Gaps = 5/87 (5%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCK--SLDSDLANVNDADEHGFIMYQLFWQDP 86
           C   W  Y   CY+  K       DA+  C     D  L +  ++ E  F++   F    
Sbjct: 2   CLPDWSVYEGYCYKVFKER-MNWADAEKFCTKQHKDGHLVSFRNSKEVDFVISLAFPMLK 60

Query: 87  QRRKWYFGGT-QQSPNLWVNEDGTNLN 112
               W  G T       W   DG  L+
Sbjct: 61  NDLVW-IGLTDYWRDCNWEWSDGAQLD 86

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 58.5 bits (142), Expect = 8e-11
 Identities = 17/85 (20%), Positives = 25/85 (29%), Gaps = 8/85 (9%)

Query: 671 KFPNNFPKTFPEAPKA--GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-----YFENFN 723
           K    F K    A +   G K+RL             W + G  +  +            
Sbjct: 13  KKSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAK 71

Query: 724 RILTIPNVKVEDQGEYICRASNDRS 748
           R LTI    + D   Y C    ++ 
Sbjct: 72  RTLTISQCSLADDAAYQCVVGGEKC 96

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 18/99 (18%), Positives = 28/99 (28%), Gaps = 17/99 (17%)

Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 246
            +   F K+       +SK      I L+       +   +W K            I   
Sbjct: 13  KKSTAFQKKLEPAY-QVSKGH---KIRLTVELAD-HDAEVKWLKNG--------QEIQMS 59

Query: 247 SDKRFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGS 282
             K    S G    L I+    + D  +Y C    +  S
Sbjct: 60  GSKYIFESIGAKRTLTISQC-SLADDAAYQCVVGGEKCS 97

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 18/96 (18%), Positives = 27/96 (28%), Gaps = 17/96 (17%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
             F K+       +SK      I L+       +   +W K            I     K
Sbjct: 16  TAFQKKLEPAY-QVSKGH---KIRLTVELAD-HDAEVKWLKNG--------QEIQMSGSK 62

Query: 523 RFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGS 555
               S G    L I+    + D  +Y C    +  S
Sbjct: 63  YIFESIGAKRTLTISQC-SLADDAAYQCVVGGEKCS 97

>1oz7_A Echicetin A-chain; platelet aggregation, dimer, toxin; 2.40A {Echis carinatus} SCOP: d.169.1.1 Length = 131

 Score = 59.4 bits (144), Expect = 9e-11
 Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 6/89 (6%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSL--DSDLANVNDADEHGFIMYQLFWQDP 86
           CP  W      CY   K P KT ++A+  C     D  L ++    E   +   +     
Sbjct: 2   CPPGWSSNGVYCYMLFKEP-KTWDEAEKFCNKQGKDGHLLSIESKKEEILVDIVVSENIG 60

Query: 87  QRRKWYFGGTQQS---PNLWVNEDGTNLN 112
           +  K + G +++S          DG+   
Sbjct: 61  KMYKIWTGLSERSKEQHCSSRWSDGSFFR 89

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 58.5 bits (142), Expect = 1e-10
 Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 10/80 (12%)

Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYICR 742
           G    L C      +    W +    L          +     L I  +  ED GEY+C 
Sbjct: 34  GATAVLRCELSK--MAPVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCM 91

Query: 743 ASNDRSALESSVTISIQAEP 762
              +R    +S  ++++A P
Sbjct: 92  CGKER----TSAMLTVRAMP 107

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 16/100 (16%), Positives = 22/100 (22%), Gaps = 18/100 (18%)

Query: 458 VKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLID 517
           V+     F +   +               L C          EW+K            + 
Sbjct: 15  VRALPIKFTEGLRNEEATEGA-----TAVLRCELSK--MAPVEWWKGH--------ETLR 59

Query: 518 PLSDKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 555
                     G    L I      ED G Y C    +  S
Sbjct: 60  DGDRHSLRQDGARCELQIRGL-VAEDAGEYLCMCGKERTS 98

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 15/95 (15%), Positives = 20/95 (21%), Gaps = 18/95 (18%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
             F +   +               L C          EW+K            +      
Sbjct: 20  IKFTEGLRNEEATEGA-----TAVLRCELSK--MAPVEWWKGH--------ETLRDGDRH 64

Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 282
                G    L I      ED G Y C    +  S
Sbjct: 65  SLRQDGARCELQIRGL-VAEDAGEYLCMCGKERTS 98

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 38.9 bits (91), Expect = 8e-04
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 745 NDRSALESSVTISIQAEP-NFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
           +  S+  +S  ++++A P  FT  L ++     A     CE   +  V   W++  E
Sbjct: 2   SSGSSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKMAPVE--WWKGHE 56

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 58.8 bits (142), Expect = 1e-10
 Identities = 16/106 (15%), Positives = 27/106 (25%), Gaps = 17/106 (16%)

Query: 679 TFP------EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----------EN 721
           +                  +     G P PS  W   GS L   ++              
Sbjct: 1   SHMPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 60

Query: 722 FNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIP 767
            +  L +      + G Y   A+N      +S+  +    P    P
Sbjct: 61  RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNP 106

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 52.6 bits (126), Expect = 2e-08
 Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 3/85 (3%)

Query: 209 LNDITLSCYAGGYPNPSYEWFKED-YVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 267
           ++   +     G P PS  W      + +               T+  G L +N P    
Sbjct: 15  MHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTH-V 73

Query: 268 DRGSYHCKASNKFGSIISESVQLAF 292
           + G+Y   A+N FG   S S+  AF
Sbjct: 74  NNGNYTLLAANPFGQ-ASASIMAAF 97

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 52.6 bits (126), Expect = 2e-08
 Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 3/85 (3%)

Query: 482 LNDITLSCYAGGYPNPSYEWFKED-YVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 540
           ++   +     G P PS  W      + +               T+  G L +N P    
Sbjct: 15  MHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTH-V 73

Query: 541 DRGSYHCKASNKFGSIISESVQLAF 565
           + G+Y   A+N FG   S S+  AF
Sbjct: 74  NNGNYTLLAANPFGQ-ASASIMAAF 97

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 58.2 bits (140), Expect = 1e-10
 Identities = 18/105 (17%), Positives = 31/105 (29%), Gaps = 10/105 (9%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP--SYEWFKEDYV--QDRLVANLIDP 245
           P    QP             +D++ +C A    +   ++ W  ++       +       
Sbjct: 11  PQITVQPETQSAIXG-----SDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLR 65

Query: 246 LSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
                       L + +  +    G Y C  SN FGS  S    L
Sbjct: 66  AQGGELMEYTTILRLRNV-EFTSEGXYQCVISNHFGSSYSVXAXL 109

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 58.2 bits (140), Expect = 1e-10
 Identities = 18/105 (17%), Positives = 31/105 (29%), Gaps = 10/105 (9%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP--SYEWFKEDYV--QDRLVANLIDP 518
           P    QP             +D++ +C A    +   ++ W  ++       +       
Sbjct: 11  PQITVQPETQSAIXG-----SDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLR 65

Query: 519 LSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
                       L + +  +    G Y C  SN FGS  S    L
Sbjct: 66  AQGGELMEYTTILRLRNV-EFTSEGXYQCVISNHFGSSYSVXAXL 109

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 53.9 bits (129), Expect = 4e-09
 Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 14/73 (19%)

Query: 687 GDKVRLECVAFGYPVP--SYNWTRRGSPLP------------RNAYFENFNRILTIPNVK 732
           G  V   C A        ++ W      L             +      +  IL + NV+
Sbjct: 25  GSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVE 84

Query: 733 VEDQGEYICRASN 745
              +G Y C  SN
Sbjct: 85  FTSEGXYQCVISN 97

>1jzn_A Galactose-specific lectin; C-type lectin, protein-disaccharide complex, sugar binding P; HET: BGC GAL; 2.20A {Crotalus atrox} SCOP: d.169.1.1 PDB: 1muq_A* Length = 135

 Score = 59.0 bits (143), Expect = 1e-10
 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 4/87 (4%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDS--DLANVNDADEHGFIMYQLFWQDP 86
           CP  W+     CY+      KT  DA++ C+       LA+ +   E   I   +     
Sbjct: 3   CPLDWLPMNGLCYKIFNQL-KTWEDAEMFCRKYKPGCHLASFHRYGESLEIAEYISDYHK 61

Query: 87  QRRKWYFGGT-QQSPNLWVNEDGTNLN 112
            +   + G   ++    W   D +  +
Sbjct: 62  GQENVWIGLRDKKKDFSWEWTDRSCTD 88

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 8/83 (9%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYI 740
             G ++ L+C           WT+ G P+  +       +     L I N   ED+G+Y+
Sbjct: 20  NLGKEICLKCEISENIPGK--WTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYV 77

Query: 741 CRASNDRSALESSVTISIQAEPN 763
                          + + + P+
Sbjct: 78  FAPDAYNV--TLPAKVHVISGPS 98

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 18/101 (17%), Positives = 27/101 (26%), Gaps = 18/101 (17%)

Query: 457 NVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLI 516
           +    G   +   TD   +L K      I L C      N   +W K            +
Sbjct: 2   SSGSSGLKILTPLTDQTVNLGKE-----ICLKCEISE--NIPGKWTKNG--------LPV 46

Query: 517 DPLSDKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 555
                 +    G    L+I +    ED G Y         +
Sbjct: 47  QESDRLKVVQKGRIHKLVIANA-LTEDEGDYVFAPDAYNVT 86

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 18/97 (18%), Positives = 26/97 (26%), Gaps = 18/97 (18%)

Query: 188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 247
            G   +   TD   +L K      I L C      N   +W K            +    
Sbjct: 6   SGLKILTPLTDQTVNLGKE-----ICLKCEISE--NIPGKWTKNG--------LPVQESD 50

Query: 248 DKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 282
             +    G    L+I +    ED G Y         +
Sbjct: 51  RLKVVQKGRIHKLVIANA-LTEDEGDYVFAPDAYNVT 86

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 59.9 bits (145), Expect = 2e-10
 Identities = 18/139 (12%), Positives = 36/139 (25%), Gaps = 24/139 (17%)

Query: 619 FVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPK 678
               +GAL    + + D G+Y   +  +  D  +      ++V+                
Sbjct: 64  LDKTNGALRIYNVSKEDRGDYYMRMLHETEDQWK----ITMEVYE-------------MV 106

Query: 679 TFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGE 738
           + P          L C             +    L          R  T+       +  
Sbjct: 107 SKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSL-------RQKTMSYQWTNLRAP 159

Query: 739 YICRASNDRSALESSVTIS 757
           + C+A N  S       ++
Sbjct: 160 FKCKAVNRVSQESEMEVVN 178

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 57.2 bits (138), Expect = 1e-09
 Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 12/87 (13%)

Query: 718 YFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQA---EPNFTIPLTDKHMD 774
             +  N  L I NV  ED+G+Y  R  ++    +  +T+ +     +P            
Sbjct: 63  DLDKTNGALRIYNVSKEDRGDYYMRMLHETED-QWKITMEVYEMVSKPMIYW-------- 113

Query: 775 NQADLTWTCEAFGVPDVTYSWFRNGEL 801
             ++ T TCE     DV    ++  E 
Sbjct: 114 ECSNATLTCEVLEGTDVELKLYQGKEH 140

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 22/132 (16%), Positives = 42/132 (31%), Gaps = 33/132 (25%)

Query: 445 YFENFNRILTIPNVKMR--GPYFIKQPTD---------VVFD-LSKRSIL---NDITLSC 489
             +  N  L I NV     G Y+++   +          V++ +SK  I    ++ TL+C
Sbjct: 63  DLDKTNGALRIYNVSKEDRGDYYMRMLHETEDQWKITMEVYEMVSKPMIYWECSNATLTC 122

Query: 490 YAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKA 549
                 +   + ++                  K    S     ++  +    R  + CKA
Sbjct: 123 EVLEGTDVELKLYQ-----------------GKEHLRSLRQKTMS-YQWTNLRAPFKCKA 164

Query: 550 SNKFGSIISESV 561
            N+        V
Sbjct: 165 VNRVSQESEMEV 176

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 43.7 bits (103), Expect = 5e-05
 Identities = 14/119 (11%), Positives = 31/119 (26%), Gaps = 22/119 (18%)

Query: 346 FVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPK 405
               +GAL    + + D G+Y   +  +  D  +      ++V+                
Sbjct: 64  LDKTNGALRIYNVSKEDRGDYYMRMLHETEDQWK----ITMEVYE-------------MV 106

Query: 406 TFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPY 464
           + P          L C             +    L          + ++     +R P+
Sbjct: 107 SKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLR-----SLRQKTMSYQWTNLRAPF 160

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 11/77 (14%), Positives = 21/77 (27%), Gaps = 18/77 (23%)

Query: 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 271
            TL+C      +   + ++                  K    S     ++  +    R  
Sbjct: 118 ATLTCEVLEGTDVELKLYQ-----------------GKEHLRSLRQKTMS-YQWTNLRAP 159

Query: 272 YHCKASNKFGSIISESV 288
           + CKA N+        V
Sbjct: 160 FKCKAVNRVSQESEMEV 176

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 60.3 bits (145), Expect = 2e-10
 Identities = 26/201 (12%), Positives = 46/201 (22%), Gaps = 65/201 (32%)

Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKM--RGPY----- 464
           +    V L C        +  W + G  +          +   + +     RG Y     
Sbjct: 16  QEDGSVLLTC---DAEAKNITWFKDGKMIGFL---TEDKKKWNLGSNAKDPRGMYQCKGS 69

Query: 465 -----------FIKQPTDVVFDLSKRSIL------------------------------N 483
                       +    D   D +K+                                  
Sbjct: 70  QNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGT 129

Query: 484 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGG-NLIINDPRQVEDR 542
            + L+C    YP     W   D          I    D +   S   +L + +  ++E  
Sbjct: 130 TVILTCPQ--YPGSEILWQHND--------KNIGGDEDDKNIGSDEDHLSLKEFSELEQS 179

Query: 543 GSYHCKASNKFGSIISESVQL 563
           G Y C          +  + L
Sbjct: 180 GYYVCYPRGSKPEDANFYLYL 200

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 57.6 bits (138), Expect = 2e-09
 Identities = 16/144 (11%), Positives = 41/144 (28%), Gaps = 35/144 (24%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRAS 744
           +    V L C        +  W + G  +          +   + +   + +G Y C+ S
Sbjct: 16  QEDGSVLLTC---DAEAKNITWFKDGKMIGFL---TEDKKKWNLGSNAKDPRGMYQCKGS 69

Query: 745 NDRS--------------ALESSVTISIQAEPNFTIPLTDKHMD-------------NQA 777
            ++S              A + +       + +     +D + +             +  
Sbjct: 70  QNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGT 129

Query: 778 DLTWTCEAFGVPDVTYSWFRNGEL 801
            +  TC  +   ++   W  N + 
Sbjct: 130 TVILTCPQYPGSEIL--WQHNDKN 151

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 57.2 bits (137), Expect = 2e-09
 Identities = 21/172 (12%), Positives = 42/172 (24%), Gaps = 28/172 (16%)

Query: 595 NYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDT---- 650
           +    N  W +D     +         ++      +  +   G Y C      S      
Sbjct: 26  DAEAKNITWFKDGKM--IGFLTEDKKKWN----LGSNAKDPRGMYQCKGSQNKSKPLQVY 79

Query: 651 -----GRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-------AGDKVRLECVAFG 698
                  +      K          K  ++  +      +       +G  V L C    
Sbjct: 80  YRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQ-- 137

Query: 699 YPVPSYNWTRRGSPLP---RNAYFENFNRILTIPNV-KVEDQGEYICRASND 746
           YP     W      +     +    +    L++    ++E  G Y+C     
Sbjct: 138 YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGS 189

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 55.3 bits (132), Expect = 9e-09
 Identities = 24/148 (16%), Positives = 47/148 (31%), Gaps = 21/148 (14%)

Query: 154 LFICEAS------IQKLHYLLNDDRTYQYGMDIENPDKIPR---GPYFIKQPTDVVFDLS 204
           ++ C+ S      +Q  + + + D   +     ++  K      G    ++   +     
Sbjct: 63  MYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPY 122

Query: 205 KRSILND-ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGG-NLIIND 262
           K SI    + L+C    YP     W   D          I    D +   S   +L + +
Sbjct: 123 KVSISGTTVILTCPQ--YPGSEILWQHND--------KNIGGDEDDKNIGSDEDHLSLKE 172

Query: 263 PRQVEDRGSYHCKASNKFGSIISESVQL 290
             ++E  G Y C          +  + L
Sbjct: 173 FSELEQSGYYVCYPRGSKPEDANFYLYL 200

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 54.5 bits (130), Expect = 2e-08
 Identities = 27/192 (14%), Positives = 53/192 (27%), Gaps = 41/192 (21%)

Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269
             + L+C        +  WFK+          +I  L++ +   + G+         + R
Sbjct: 19  GSVLLTC---DAEAKNITWFKDG--------KMIGFLTEDKKKWNLGS------NAKDPR 61

Query: 270 GSYHCKASNKFGSIISESVQLAFGF---IGEFNLKRAPEIGNQNWGKAMFCDPPT----- 321
           G Y CK S      +    ++               A +   +  G     +        
Sbjct: 62  GMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTP 121

Query: 322 ---------------NYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQI-DAGN 365
                           YPG    W  +      +ED +   S +  L      ++  +G 
Sbjct: 122 YKVSISGTTVILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGY 181

Query: 366 YSCNVQSKVSDT 377
           Y C  +    + 
Sbjct: 182 YVCYPRGSKPED 193

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 54.5 bits (130), Expect = 2e-08
 Identities = 27/192 (14%), Positives = 53/192 (27%), Gaps = 41/192 (21%)

Query: 483 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 542
             + L+C        +  WFK+          +I  L++ +   + G+         + R
Sbjct: 19  GSVLLTC---DAEAKNITWFKDG--------KMIGFLTEDKKKWNLGS------NAKDPR 61

Query: 543 GSYHCKASNKFGSIISESVQLAFGF---IGEFNLKRAPEIGNQNWGKAMFCDPPT----- 594
           G Y CK S      +    ++               A +   +  G     +        
Sbjct: 62  GMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTP 121

Query: 595 ---------------NYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQI-DAGN 638
                           YPG    W  +      +ED +   S +  L      ++  +G 
Sbjct: 122 YKVSISGTTVILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGY 181

Query: 639 YSCNVQSKVSDT 650
           Y C  +    + 
Sbjct: 182 YVCYPRGSKPED 193

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 57.3 bits (139), Expect = 3e-10
 Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 9/82 (10%)

Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA------YFENFNRILTIPNVKVEDQGEYI 740
           G++V LEC        +  W + G  +            E    IL I      D  EY 
Sbjct: 22  GERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYS 80

Query: 741 CRASNDRSALESSVTISIQAEP 762
              +  +S   + +++ +++ P
Sbjct: 81  VMTTGGQS--SAKLSVDLKSGP 100

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 44.2 bits (105), Expect = 8e-06
 Identities = 19/98 (19%), Positives = 27/98 (27%), Gaps = 19/98 (19%)

Query: 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
           G    KQ  D      +R     + L C      + + +WFK            I P   
Sbjct: 7   GIMVTKQLEDTTAYCGER-----VELECEVSE-DDANVKWFKNG--------EEIIPGPK 52

Query: 249 KRFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGS 282
            R+ +        LII       D   Y    +    S
Sbjct: 53  SRYRIRVEGKKHILIIEGA-TKADAAEYSVMTTGGQSS 89

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 44.2 bits (105), Expect = 8e-06
 Identities = 19/98 (19%), Positives = 27/98 (27%), Gaps = 19/98 (19%)

Query: 462 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 521
           G    KQ  D      +R     + L C      + + +WFK            I P   
Sbjct: 7   GIMVTKQLEDTTAYCGER-----VELECEVSE-DDANVKWFKNG--------EEIIPGPK 52

Query: 522 KRFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGS 555
            R+ +        LII       D   Y    +    S
Sbjct: 53  SRYRIRVEGKKHILIIEGA-TKADAAEYSVMTTGGQSS 89

>1sb2_B Rhodocetin beta subunit; C-type lectin, domain swapping, toxin; 1.90A {Calloselasma rhodostoma} SCOP: d.169.1.1 PDB: 3gpr_B Length = 129

 Score = 57.8 bits (140), Expect = 3e-10
 Identities = 18/91 (19%), Positives = 40/91 (43%), Gaps = 9/91 (9%)

Query: 26  ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS--LDSDLANVNDADEHGFIMYQLFW 83
           + RCP  W   +  CY+  K   KT  +A+  C     +  L ++  A E  F+   +  
Sbjct: 1   DFRCPTTWSASKLYCYKPFKEK-KTWIEAERFCAKQAENGHLVSIGSAAEADFL-DLVIV 58

Query: 84  QDPQRRKWYF--GGTQQSPNLWVNEDGTNLN 112
            +  ++++    G T+++       +G +++
Sbjct: 59  VNFDKQRYRAWTGLTERN---LKWTNGASVS 86

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 59.2 bits (143), Expect = 4e-10
 Identities = 22/192 (11%), Positives = 46/192 (23%), Gaps = 29/192 (15%)

Query: 590 CDPPT---NYPGVNYYWARD-----YFPNFVEEDK-----RVFVSYDG--ALYFSALEQI 634
           C              YW ++        +           R         ++   AL   
Sbjct: 16  CGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPS 75

Query: 635 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC 694
           D G Y C V     D  +      + +   +           P          +  R+ C
Sbjct: 76  DEGTYECVVLKYEKDAFKREHLAEVTLSVKA-------DFPTPSISDFEIPTSNIRRIIC 128

Query: 695 VAFG-YPVPSYNWTRRGSPLPRNAYFENFN------RILTIPNVKVEDQGEYICRASNDR 747
              G +P P  +W   G  L       + +       + +  +  +     ++C      
Sbjct: 129 STSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGH 188

Query: 748 SALESSVTISIQ 759
             +  +   +  
Sbjct: 189 LRVNQTFNWNTA 200

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 49.2 bits (117), Expect = 1e-06
 Identities = 21/141 (14%), Positives = 34/141 (24%), Gaps = 23/141 (16%)

Query: 317 CDPPT---NYPGVNYYWARD-----YFPNFVEEDK-----RVFVSYDG--ALYFSALEQI 361
           C              YW ++        +           R         ++   AL   
Sbjct: 16  CGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPS 75

Query: 362 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC 421
           D G Y C V     D  +      + +   +           P          +  R+ C
Sbjct: 76  DEGTYECVVLKYEKDAFKREHLAEVTLSVKA-------DFPTPSISDFEIPTSNIRRIIC 128

Query: 422 VAFG-YPVPSYNWTRRGSPLP 441
              G +P P  +W   G  L 
Sbjct: 129 STSGGFPEPHLSWLENGEELN 149

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 46.9 bits (111), Expect = 6e-06
 Identities = 22/140 (15%), Positives = 40/140 (28%), Gaps = 24/140 (17%)

Query: 685 KAGDKVRLECV----AFGYPVPSYNWTRRGSPLPRNAYFENF------NRI--------- 725
           +  +   L C               W +    +      +        NR          
Sbjct: 7   EVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLS 66

Query: 726 LTIPNVKVEDQGEYICRASNDRS---ALESSVTISIQAEPNFTIP-LTDKHMDNQADLTW 781
           + I  ++  D+G Y C            E    +++  + +F  P ++D  +        
Sbjct: 67  IVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRI 126

Query: 782 TCEAFGV-PDVTYSWFRNGE 800
            C   G  P+   SW  NGE
Sbjct: 127 ICSTSGGFPEPHLSWLENGE 146

>1umr_A Convulxin alpha, CVX alpha; lectin, C-type lectin, platelet, sugar-binding protein, activator, snake venom; 2.40A {Crotalus durissus terrificus} SCOP: d.169.1.1 PDB: 1uos_A Length = 135

 Score = 57.5 bits (139), Expect = 5e-10
 Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 9/93 (9%)

Query: 27  LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSL--DSDLANVNDADEHGFIMYQLFWQ 84
           L CP  W  Y   CYR          DA+  C      + L ++  A E  F+   +  Q
Sbjct: 2   LHCPSDWYYYDQHCYRIFNEE-MNWEDAEWFCTKQAKGAHLVSIKSAKEADFV-AWMVTQ 59

Query: 85  DPQRRKWYF-----GGTQQSPNLWVNEDGTNLN 112
           + +    +         ++        DG++++
Sbjct: 60  NIEESFSHVSIGLRVQNKEKQCSTKWSDGSSVS 92

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 56.8 bits (137), Expect = 6e-10
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 12/88 (13%)

Query: 687 GDKVRLECVAFGYPVPSY-NWTRRGSPLP----------RNAYFENFNRILTIPNVKVED 735
           G+K +++C     P P    W+ + + L             +  E     LTI N+   D
Sbjct: 28  GEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRAD 87

Query: 736 -QGEYICRASNDRSALESSVTISIQAEP 762
            Q  Y C A N   +    + +  Q   
Sbjct: 88  FQTIYNCTAWNSFGSDTEIIRLKEQGSE 115

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 56.4 bits (136), Expect = 8e-10
 Identities = 21/116 (18%), Positives = 44/116 (37%), Gaps = 23/116 (19%)

Query: 457 NVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSY-EWFKEDYVQDRLVANL 515
            + + GP  I           ++       + C+    P P    W  ++        N+
Sbjct: 8   TLTVNGPPIISSTQTQHALHGEK-----GQIKCFIRSTPPPDRIAWSWKE--------NV 54

Query: 516 IDPLSDKRFTLS--------GGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
           ++  +  R+T+            L I++  + + +  Y+C A N FGS  +E ++L
Sbjct: 55  LESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGS-DTEIIRL 109

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 55.7 bits (134), Expect = 1e-09
 Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 23/112 (20%)

Query: 188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSY-EWFKEDYVQDRLVANLIDPL 246
            GP  I           ++       + C+    P P    W  ++        N+++  
Sbjct: 12  NGPPIISSTQTQHALHGEK-----GQIKCFIRSTPPPDRIAWSWKE--------NVLESG 58

Query: 247 SDKRFTLS--------GGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
           +  R+T+            L I++  + + +  Y+C A N FGS  +E ++L
Sbjct: 59  TSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGS-DTEIIRL 109

>1uv0_A Pancreatitis-associated protein 1; lectin, C-type, secreted, inflammatory response, acute phase; 1.78A {Homo sapiens} SCOP: d.169.1.1 PDB: 2go0_A Length = 149

 Score = 57.1 bits (138), Expect = 9e-10
 Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 8/100 (8%)

Query: 20  QTIDELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDS-DLANVNDADEHGFIM 78
           + +    +RCP+    Y   CY    SP K+  DA L C+   S +L +V    E  F+ 
Sbjct: 5   RELPSARIRCPKGSKAYGSHCYALFLSP-KSWTDADLACQKRPSGNLVSVLSGAEGSFVS 63

Query: 79  YQLFWQDPQRRKWYFGGT------QQSPNLWVNEDGTNLN 112
             +          + G        + +   W       +N
Sbjct: 64  SLVKSIGNSYSYVWIGLHDPTQGTEPNGEGWEWSSSDVMN 103

>1c3a_A Flavocetin-A: alpha subunit; C-type lectin-like domains, membrane protein; 2.50A {Trimeresurus flavoviridis} SCOP: d.169.1.1 PDB: 1v4l_A Length = 135

 Score = 56.3 bits (136), Expect = 1e-09
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 7/90 (7%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDLANVNDADEHGFIMYQLFWQDP 86
           C   W  Y   CY+    P K   DA+  C+     S L ++  + E  F+   +  +  
Sbjct: 4   CIPGWSAYDRYCYQAFSKP-KNWEDAESFCEEGVKTSHLVSIESSGEGDFVAQLVAEKIK 62

Query: 87  QRRKWY-FGGTQQS---PNLWVNEDGTNLN 112
              ++   G   Q+          D +++N
Sbjct: 63  TSFQYVWIGLRIQNKEQQCRSEWSDASSVN 92

>1gz2_A Ovocleidin-17, OC-17 ovocleidin; structural protein, CTLD, eggshell structural protein, phosphoprotein, sugar-binding protein, glycoprotein; HET: SEP; 1.5A {Gallus gallus} SCOP: d.169.1.1 Length = 142

 Score = 56.4 bits (136), Expect = 1e-09
 Identities = 19/95 (20%), Positives = 25/95 (26%), Gaps = 13/95 (13%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSL--DSDLANVNDADEHGFIMYQLFWQDP 86
           C   WV     C  F      + + A+  C+     S LA V  A E   +  +L     
Sbjct: 5   CGPGWVPTPGGCLGFFSRE-LSWSRAESFCRRWGPGSHLAAVRSAAELRLL-AELLNASR 62

Query: 87  QRRKWYFGGT---------QQSPNLWVNEDGTNLN 112
                  G                 W   DGT   
Sbjct: 63  GGDGSGEGADGRVWIGLHRPAGSRSWRWSDGTAPR 97

>1ukm_A EMS16 A chain, EMS16 subunit A; domain swapping, C-type lectin, toxin; HET: NAG; 1.90A {Echis multisquamatus} SCOP: d.169.1.1 PDB: 1v7p_A* Length = 134

 Score = 55.9 bits (135), Expect = 2e-09
 Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 13/93 (13%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSL--DSDLANVNDADEHGFIMYQLFWQDP 86
           CP  W  Y   CY  +  P +   +A+  C     D  L ++   +E  F+  QL     
Sbjct: 4   CPSDWTAYDQHCYLAIGEP-QNWYEAERFCTEQAKDGHLVSIQSREEGNFV-AQLVSGFM 61

Query: 87  QRRKWYF--GGT-----QQSPNLWVNEDGTNLN 112
            R + Y   G       QQ    W   DG+ + 
Sbjct: 62  HRSEIYVWIGLRDRREEQQCNPEWN--DGSKII 92

>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A* Length = 149

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 13/88 (14%), Positives = 28/88 (31%), Gaps = 8/88 (9%)

Query: 26  ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQD 85
           +L       +     +          +  K  C  L   +A   +A+E+  I      Q+
Sbjct: 25  KLHAFSMGKKSGKKFFVTNHER-MPFSKVKALCSELRGTVAIPRNAEENKAI------QE 77

Query: 86  PQRRKWYFGGT-QQSPNLWVNEDGTNLN 112
             +   + G T + +   ++   G  L 
Sbjct: 78  VAKTSAFLGITDEVTEGQFMYVTGGRLT 105

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 55.0 bits (132), Expect = 2e-09
 Identities = 23/100 (23%), Positives = 32/100 (32%), Gaps = 12/100 (12%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPN---PSYEWFKEDYVQDRLVAN---LI 243
             F+ +P D    +        IT S    G      P  +WFK  +V           +
Sbjct: 5   GLFVMRPQDGEVTVGG-----SITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQL 59

Query: 244 DPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI 283
               D+   +    L I D  Q    GSY C+ S K    
Sbjct: 60  HDSYDRASKVYLFELHITDA-QPAFTGSYRCEVSTKDKFD 98

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 55.0 bits (132), Expect = 2e-09
 Identities = 23/100 (23%), Positives = 32/100 (32%), Gaps = 12/100 (12%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPN---PSYEWFKEDYVQDRLVAN---LI 516
             F+ +P D    +        IT S    G      P  +WFK  +V           +
Sbjct: 5   GLFVMRPQDGEVTVGG-----SITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQL 59

Query: 517 DPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI 556
               D+   +    L I D  Q    GSY C+ S K    
Sbjct: 60  HDSYDRASKVYLFELHITDA-QPAFTGSYRCEVSTKDKFD 98

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 48.1 bits (114), Expect = 4e-07
 Identities = 15/104 (14%), Positives = 31/104 (29%), Gaps = 21/104 (20%)

Query: 677 PKTFPEAPK-----AGDKVRLECVAFGYPV---PSYNWTR---------RGSPLPRNAYF 719
              F   P+      G  +       G  +   P   W +          G  L  +  +
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 720 ENFNRI----LTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 759
           +  +++    L I + +    G Y C  S       S+  +++ 
Sbjct: 64  DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107

>1j34_A Coagulation factor IX-binding protein A chain; magnesium ION, calcium ION, GLA domain, protein binding/blood clotting complex; HET: CGU; 1.55A {Trimeresurus flavoviridis} SCOP: d.169.1.1 PDB: 1bj3_A* 1j35_A* 1x2t_A* 1x2w_A 1ixx_A 1y17_A 1wt9_A 1iod_A* Length = 129

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 9/91 (9%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCK--SLDSDLANVNDADEHGFI--MYQLFWQ 84
           CP  W  Y   CY+  K   KT +DA+  C   +    L ++  A E  F+  +     Q
Sbjct: 2   CPSGWSSYEGHCYKPFKLY-KTWDDAERFCTEQAKGGHLVSIESAGEADFVAQLVTENIQ 60

Query: 85  DPQRRKWYFGGT---QQSPNLWVNEDGTNLN 112
           + +   W  G     ++        DG++++
Sbjct: 61  NTKSYVW-IGLRVQGKEKQCSSEWSDGSSVS 90

>1hup_A Mannose-binding protein; alpha-helical coiled-coil, C-type lectin; 2.50A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1 Length = 141

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 8/85 (9%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
                 Q  +  +        T    K  C    + +A   +A E+G I   +      +
Sbjct: 20  TFSLGKQVGNKFFLTNGEI-MTFEKVKALCVKFQASVATPRNAAENGAIQNLI------K 72

Query: 89  RKWYFGGT-QQSPNLWVNEDGTNLN 112
            + + G T +++   +V+  G  L 
Sbjct: 73  EEAFLGITDEKTEGQFVDLTGNRLT 97

>1sb2_A Rhodocetin alpha subunit; C-type lectin, domain swapping, toxin; 1.90A {Calloselasma rhodostoma} SCOP: d.169.1.1 PDB: 3gpr_A Length = 133

 Score = 55.2 bits (133), Expect = 2e-09
 Identities = 16/91 (17%), Positives = 36/91 (39%), Gaps = 9/91 (9%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDLANVNDADEHGFIMYQLFWQDP 86
           CP  W   +  CYR  K   KT  +A+  C   +  + L ++ +  E  F+   +   + 
Sbjct: 2   CPDGWSSTKSYCYRPFKEK-KTWEEAERFCTEQEKEAHLVSMENRLEAVFV-DMVMENNF 59

Query: 87  QRRKWYF-----GGTQQSPNLWVNEDGTNLN 112
           + + +          +   +     DG++++
Sbjct: 60  ENKIYRSWIGLKIENKGQRSNLEWSDGSSIS 90

>3gpr_C Rhodocetin subunit gamma; disulfide bond, lectin, secreted, toxin, cell adhesion; 3.20A {Calloselasma rhodostoma} Length = 134

 Score = 55.2 bits (133), Expect = 2e-09
 Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 9/93 (9%)

Query: 27  LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCK--SLDSDLANVNDADEHGFIMYQLFWQ 84
             C   W  Y   CY+    P KT ++A+  C   +    L ++    E  F+  QL   
Sbjct: 1   FNCLPGWSAYDQHCYQAFNEP-KTWDEAERFCTEQAKRGHLVSIGSDGEADFV-AQLVTN 58

Query: 85  DPQRRKWYF--GG---TQQSPNLWVNEDGTNLN 112
           + +R + Y   G     ++           ++ 
Sbjct: 59  NIKRPELYVWIGLRDRRKEQQCSSEWSMSASII 91

>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 Length = 168

 Score = 55.9 bits (135), Expect = 3e-09
 Identities = 13/88 (14%), Positives = 28/88 (31%), Gaps = 8/88 (9%)

Query: 26  ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQD 85
           +L       +     +          +  K  C  L   +A   +A+E+  I      Q+
Sbjct: 44  KLHAFSMGKKSGKKFFVTNHER-MPFSKVKALCSELRGTVAIPRNAEENKAI------QE 96

Query: 86  PQRRKWYFGGT-QQSPNLWVNEDGTNLN 112
             +   + G T + +   ++   G  L 
Sbjct: 97  VAKTSAFLGITDEVTEGQFMYVTGGRLT 124

>2e3x_B Coagulation factor X-activating enzyme light CHAI; disintegrin, metalloproteinase, C-type lectin, hydrolase, BL clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia russellii siamensis} Length = 134

 Score = 55.2 bits (133), Expect = 3e-09
 Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 13/95 (13%)

Query: 27  LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSL--DSDLANVNDADEHGFI--MYQLF 82
           L CP     YR  CYR  K   KT   A+  C     +  L ++   +E  F+  +    
Sbjct: 1   LDCPPDSSLYRYFCYRVFKEH-KTWEAAERFCMEHPNNGHLVSIESMEEAEFVAKLLSNT 59

Query: 83  WQDPQRRKWYFGGTQQSPN-----LWVNEDGTNLN 112
                   W  G   +         W   DG++++
Sbjct: 60  TGKFITHFW-IGLMIKDKEQECSSEWS--DGSSVS 91

>3bx4_A Aggretin alpha chain; toxin; 1.70A {Agkistrodon rhodostoma} PDB: 2vrp_A Length = 136

 Score = 54.8 bits (132), Expect = 3e-09
 Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 12/93 (12%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDLANVNDADEHGFIMYQLFWQDP 86
           C   W  Y   CY+      KT ++A+  C++ +  + LA++    E  F+ + +  +D 
Sbjct: 5   CDFGWSPYDQHCYQAFNEQ-KTWDEAEKFCRAQENGAHLASIESNGEADFVSWLISQKDE 63

Query: 87  QRRKWYF--GGTQQSPN-----LWVNEDGTNLN 112
              + Y   G   Q+        W   DG++++
Sbjct: 64  LADEDYVWIGLRAQNKEQQCSSEWS--DGSSVS 94

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 56.6 bits (136), Expect = 4e-09
 Identities = 38/192 (19%), Positives = 61/192 (31%), Gaps = 22/192 (11%)

Query: 591 DPPTNYPGVNYYWARDYFPNFV-------EEDKRVFVSYDGALYFSALEQIDAGNYS--- 640
            P  +   +   W        V       E + R    Y G       + I AG  +   
Sbjct: 29  FPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILR-DGITAGKAALRI 87

Query: 641 CNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTF-PEAPKAGDKVRLECVAFG- 698
            NV    SD+G+   +F    F      +LK                   + LEC + G 
Sbjct: 88  HNVT--ASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGW 145

Query: 699 YPVPSYNWT-RRGSPLP--RNAYFENFNRILTIP---NVKVEDQGEYICRASNDRSALES 752
           YP P   W+  +G  +P        +   +  +     ++        C   +    LE 
Sbjct: 146 YPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEK 205

Query: 753 SVTISIQAEPNF 764
           + +ISI A+P F
Sbjct: 206 TASISI-ADPFF 216

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 50.5 bits (120), Expect = 5e-07
 Identities = 30/201 (14%), Positives = 53/201 (26%), Gaps = 30/201 (14%)

Query: 211 DITLSCY---AGGYPNPSYEWFKED-------YVQDRLVANLIDPLSDKRFTLSGGN--- 257
           D  L C+            +W           Y   + V +        R ++       
Sbjct: 21  DADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITA 80

Query: 258 ----LIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGK 313
               L I++     D G Y C   +       E   +        +       G ++ G 
Sbjct: 81  GKAALRIHNV-TASDSGKYLCYFQDGDF---YEKALVELKVAALGSDLHVDVKGYKDGGI 136

Query: 314 AMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSA---LEQIDAGNYSCNV 370
            + C     YP     W+ +   N    +  V     G    +A   +        SC +
Sbjct: 137 HLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTI 196

Query: 371 QSKVSDTGRNG------PFFP 385
           +S +    +        PFF 
Sbjct: 197 RSSLLGLEKTASISIADPFFR 217

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 50.5 bits (120), Expect = 5e-07
 Identities = 30/201 (14%), Positives = 53/201 (26%), Gaps = 30/201 (14%)

Query: 484 DITLSCY---AGGYPNPSYEWFKED-------YVQDRLVANLIDPLSDKRFTLSGGN--- 530
           D  L C+            +W           Y   + V +        R ++       
Sbjct: 21  DADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITA 80

Query: 531 ----LIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGK 586
               L I++     D G Y C   +       E   +        +       G ++ G 
Sbjct: 81  GKAALRIHNV-TASDSGKYLCYFQDGDF---YEKALVELKVAALGSDLHVDVKGYKDGGI 136

Query: 587 AMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSA---LEQIDAGNYSCNV 643
            + C     YP     W+ +   N    +  V     G    +A   +        SC +
Sbjct: 137 HLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTI 196

Query: 644 QSKVSDTGRNG------PFFP 658
           +S +    +        PFF 
Sbjct: 197 RSSLLGLEKTASISIADPFFR 217

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 50.5 bits (120), Expect = 6e-07
 Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 3/78 (3%)

Query: 723 NRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWT 782
              L I NV   D G+Y+C   +     ++ V + + A    +    D        +   
Sbjct: 82  KAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAA--LGSDLHVDVKGYKDGGIHLE 139

Query: 783 CEAFG-VPDVTYSWFRNG 799
           C + G  P     W  N 
Sbjct: 140 CRSTGWYPQPQIQWSNNK 157

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 41.2 bits (96), Expect = 6e-04
 Identities = 29/137 (21%), Positives = 43/137 (31%), Gaps = 16/137 (11%)

Query: 318 DPPTNYPGVNYYWARDYFPNFV-------EEDKRVFVSYDGALYFSALEQIDAGNYS--- 367
            P  +   +   W        V       E + R    Y G       + I AG  +   
Sbjct: 29  FPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILR-DGITAGKAALRI 87

Query: 368 CNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTF-PEAPKAGDKVRLECVAFG- 425
            NV    SD+G+   +F    F      +LK                   + LEC + G 
Sbjct: 88  HNVT--ASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGW 145

Query: 426 YPVPSYNWT-RRGSPLP 441
           YP P   W+  +G  +P
Sbjct: 146 YPQPQIQWSNNKGENIP 162

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 56.0 bits (135), Expect = 6e-09
 Identities = 21/164 (12%), Positives = 40/164 (24%), Gaps = 7/164 (4%)

Query: 590 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSD 649
           C              ++     +    + +   D       ++   AG Y C  +     
Sbjct: 30  CQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYR 89

Query: 650 TGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRR 709
              +     L V        L                G+ + L C +   P   ++  + 
Sbjct: 90  FRYSDTL-ELVVTGLYGKPFLSADRG------LVLMPGENISLTCSSAHIPFDRFSLAKE 142

Query: 710 GSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESS 753
           G                ++  V +   G Y C    +RS    S
Sbjct: 143 GELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWS 186

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 47.2 bits (112), Expect = 6e-06
 Identities = 17/127 (13%), Positives = 39/127 (30%), Gaps = 8/127 (6%)

Query: 685 KAGDKVRLEC-VAFGYPVPSYNWTRRGSPLP---RNAYFENFNRILTIPNVKVEDQGEYI 740
                V+++C       +      +  +      R  ++   +    I ++     G Y 
Sbjct: 21  PLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQ 80

Query: 741 CRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQA----DLTWTCEAFGVPDVTYSWF 796
           C+          S T+ +     +  P              +++ TC +  +P   +S  
Sbjct: 81  CQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTCSSAHIPFDRFSLA 140

Query: 797 RNGELGH 803
           + GEL  
Sbjct: 141 KEGELSL 147

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 23/187 (12%), Positives = 41/187 (21%), Gaps = 33/187 (17%)

Query: 317 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSD 376
           C              ++     +    + +   D       ++   AG Y C  +     
Sbjct: 30  CQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYR 89

Query: 377 TGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRR 436
              +     L V        L                G+ + L C +   P   ++  + 
Sbjct: 90  FRYSDTL-ELVVTGLYGKPFLSADRG------LVLMPGENISLTCSSAHIPFDRFSLAKE 142

Query: 437 GSPLPRNAYFENFNRILTIPNV--KMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGY 494
           G                ++  V   + G Y                        CY G Y
Sbjct: 143 GELSLPQHQSGEHPANFSLGPVDLNVSGIY-----------------------RCY-GWY 178

Query: 495 PNPSYEW 501
               Y W
Sbjct: 179 NRSPYLW 185

>3alu_A Lectin CEL-IV, C-type; C-type lectin, raffinose, sugar binding protein; HET: RAF; 1.65A {Cucumaria echinata} PDB: 3als_A* 3alt_A* Length = 157

 Score = 54.5 bits (131), Expect = 7e-09
 Identities = 15/102 (14%), Positives = 34/102 (33%), Gaps = 19/102 (18%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSL-----------DSDLANVNDADEHGFI 77
           CP  W  +   C+R   +     ++A+  C+                LA+++ A+   F+
Sbjct: 5   CPPLWTGFNGKCFRLFHNH-LNFDNAENACRQFGLASCSGDELATGHLASIHSAESQAFL 63

Query: 78  ------MYQLFWQDPQRRKWYFGGT-QQSPNLWVNEDGTNLN 112
                             + Y G     + +     DG++++
Sbjct: 64  TELVKTSLPDLITGGWAPQVYIGMKVGSTNSDQTWTDGSSVD 105

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* Length = 248

 Score = 56.2 bits (135), Expect = 8e-09
 Identities = 16/85 (18%), Positives = 37/85 (43%), Gaps = 3/85 (3%)

Query: 726 LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEA 785
           L +P +++E+ GEY C         + +V + + A P   + L D+    + +  + CE+
Sbjct: 84  LRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRL-LLDQVGMKENEDKYMCES 142

Query: 786 FGV--PDVTYSWFRNGELGHQMTDL 808
            G     +  +W +  +      ++
Sbjct: 143 SGFYPEAINITWEKQTQKFPHPIEI 167

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 54.5 bits (131), Expect = 9e-09
 Identities = 21/132 (15%), Positives = 36/132 (27%), Gaps = 28/132 (21%)

Query: 687 GDKVRLECVAFGYPVPSYNWTRRG--------------SPLPRNAYFENFNRILTIPNVK 732
              V         P+    W ++               S      Y +  +  LTI N+ 
Sbjct: 10  YGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLT 68

Query: 733 VEDQGEYICRASNDRSALESSVTISIQA---EPNFTIPLTDKHMDNQADLTWTCEAFGVP 789
             D+ EY   + N          + +     +P              ++ T TCE     
Sbjct: 69  SSDEDEYEMESPNITD--TMKFFLYVLEMVSKPMIYW--------ECSNATLTCEVLEGT 118

Query: 790 DVTYSWFRNGEL 801
           DV    ++  E 
Sbjct: 119 DVELKLYQGKEH 130

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 53.8 bits (129), Expect = 2e-08
 Identities = 20/152 (13%), Positives = 35/152 (23%), Gaps = 27/152 (17%)

Query: 606 DYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHS 665
             F +F  +++    +  G+L    L   D   Y     +           F L V    
Sbjct: 44  RAFSSF--KNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITDTM-----KFFLYVLE-- 94

Query: 666 NFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI 725
                        + P          L C             +    L          R 
Sbjct: 95  -----------MVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHL-------RSLRQ 136

Query: 726 LTIPNVKVEDQGEYICRASNDRSALESSVTIS 757
            T+       +  + C+A N  S       ++
Sbjct: 137 KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVN 168

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 41.1 bits (96), Expect = 4e-04
 Identities = 25/170 (14%), Positives = 47/170 (27%), Gaps = 47/170 (27%)

Query: 414 GDKVRLECVAFGYPVPSYNWTRRG--------------SPLPRNAYFENFNRILTIPNVK 459
              V         P+    W ++               S      Y +  +  LTI N+ 
Sbjct: 10  YGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLT 68

Query: 460 MR--GPYFIKQPTDV--------VFD-LSKRSI---LNDITLSCYAGGYPNPSYEWFKED 505
                 Y ++ P           V + +SK  I    ++ TL+C      +   + ++  
Sbjct: 69  SSDEDEYEMESPNITDTMKFFLYVLEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQ-- 126

Query: 506 YVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGS 555
                           K    S     ++  +    R  + CKA N+   
Sbjct: 127 ---------------GKEHLRSLRQKTMS-YQWTNLRAPFKCKAVNRVSQ 160

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196

 Score = 55.1 bits (132), Expect = 9e-09
 Identities = 18/133 (13%), Positives = 38/133 (28%), Gaps = 11/133 (8%)

Query: 681 PEAP--KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFN-RILTIPNVKVEDQG 737
           P     + G  + L C                + L RN            + +++ E + 
Sbjct: 9   PRVAFVERGGSLWLNCSTNCPRPERGGLE---TSLRRNGTQRGLRWLARQLVDIR-EPET 64

Query: 738 EYICRASNDRSALESSVTISIQAEP-NFTIPLTDKHMDNQADLTWTCEAFGV---PDVTY 793
           + +C     R  L++   I     P    +           + T +C   G      +T 
Sbjct: 65  QPVCFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTL 124

Query: 794 SWFRNGELGHQMT 806
           +  R  +   + +
Sbjct: 125 TLLRGAQELIRRS 137

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 56.8 bits (137), Expect = 1e-08
 Identities = 38/228 (16%), Positives = 68/228 (29%), Gaps = 33/228 (14%)

Query: 590 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSD 649
           C     +   N+   ++   +      R+F     +   S +    AGNY+C      S 
Sbjct: 45  CHYRHRFN--NFMLYKEDRIHIPIFHGRIF---QESFNMSPVTTAHAGNYTCRGSHPHSP 99

Query: 650 TGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP-----KAGDKVRLECVAFGYPVPSY 704
           TG + P         SN   +    N  K    A      K+G++V L+C +       +
Sbjct: 100 TGWSAP---------SNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQCWSDIMFE-HF 149

Query: 705 NWTRRGSPLP-----RNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESS-----V 754
              + G            +        +I  + +   G Y C  S   +  + S     +
Sbjct: 150 FLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPL 209

Query: 755 TISIQAEPNFTI--PLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
            I +                +     +T +C +    D  Y   R G 
Sbjct: 210 DIVVTGPYEKPSLSAQPGPKVQAGESVTLSCSSRSSYD-MYHLSREGG 256

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 47.9 bits (114), Expect = 6e-06
 Identities = 41/262 (15%), Positives = 73/262 (27%), Gaps = 44/262 (16%)

Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKM--RGPYF------ 465
           G  V L C    +   ++   +         +   F     +  V     G Y       
Sbjct: 38  GGHVTLRCHY-RHRFNNFMLYKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSHP 96

Query: 466 -----IKQPTDVV-----FDLSKRSILND----------ITLSCYAGGYPNPSYEWFKED 505
                   P++ V      +  K S+L            + L C+        +   KE 
Sbjct: 97  HSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQCW-SDIMFEHFFLHKEG 155

Query: 506 YVQD--RLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFG----SIISE 559
             +D  RLV  + D +S   F++         P  +   G+Y C  S        S  S+
Sbjct: 156 ISKDPSRLVGQIHDGVSKANFSIG--------PMMLALAGTYRCYGSVTHTPYQLSAPSD 207

Query: 560 SVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVF 619
            + +      E     A        G+++     +      Y+ +R+   +         
Sbjct: 208 PLDIVVTGPYEKPSLSAQPGPKVQAGESVTLSCSSRSSYDMYHLSREGGAHERRLPAVRK 267

Query: 620 VSYDGALYFSALEQIDAGNYSC 641
           V+      F        G Y C
Sbjct: 268 VNRTFQADFPLGPATHGGTYRC 289

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 48/299 (16%), Positives = 81/299 (27%), Gaps = 45/299 (15%)

Query: 485 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 544
           +TL C+   +   ++  +KED      +      +  + F +S        P      G+
Sbjct: 41  VTLRCH-YRHRFNNFMLYKED---RIHIPIFHGRIFQESFNMS--------PVTTAHAGN 88

Query: 545 YHCKASNKF----GSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPT-----N 595
           Y C+ S+       S  S  V +           R P +           +        +
Sbjct: 89  YTCRGSHPHSPTGWSAPSNPVVIMVTG-----NHRKPSLLAHPGPLVKSGERVILQCWSD 143

Query: 596 YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFS--ALEQIDAGNYSCNVQSKVSDTGRN 653
               +++  ++                     FS   +    AG Y C      +    +
Sbjct: 144 IMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLS 203

Query: 654 GPFFPLK--VFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGS 711
            P  PL   V        L              +AG+ V L C +       Y+ +R G 
Sbjct: 204 APSDPLDIVVTGPYEKPSLSAQPG------PKVQAGESVTLSCSSRSSYD-MYHLSREGG 256

Query: 712 PLP---RNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESS-----VTISIQAEP 762
                       N       P       G Y C  S   S  E S     + +S+   P
Sbjct: 257 AHERRLPAVRKVNRTFQADFPLGPATHGGTYRCFGSFRHSPYEWSDPSDPLLVSVTGNP 315

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 44.5 bits (105), Expect = 7e-05
 Identities = 19/128 (14%), Positives = 36/128 (28%), Gaps = 23/128 (17%)

Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASND 746
           G  V L C    +   ++   +         +   F     +  V     G Y CR S+ 
Sbjct: 38  GGHVTLRCHY-RHRFNNFMLYKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSHP 96

Query: 747 RS---------ALESSVTI-----SIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVT 792
            S          +   VT      S+ A P   +   ++       +   C +  +    
Sbjct: 97  HSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGER-------VILQCWS-DIMFEH 148

Query: 793 YSWFRNGE 800
           +   + G 
Sbjct: 149 FFLHKEGI 156

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 41.4 bits (97), Expect = 8e-04
 Identities = 28/163 (17%), Positives = 50/163 (30%), Gaps = 15/163 (9%)

Query: 212 ITLSCYAGGYPNPSYEWFKEDYVQD--RLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269
           + L C+        +   KE   +D  RLV  + D +S   F++         P  +   
Sbjct: 136 VILQCW-SDIMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIG--------PMMLALA 186

Query: 270 GSYHCKASNKFG----SIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPG 325
           G+Y C  S        S  S+ + +      E     A        G+++     +    
Sbjct: 187 GTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVTLSCSSRSSY 246

Query: 326 VNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC 368
             Y+ +R+   +         V+      F        G Y C
Sbjct: 247 DMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPATHGGTYRC 289

>1fvu_A Botrocetin alpha chain; VON WILLBRAND factor modulator, C-type lectin, metal- binding, loop exchanged dimer, toxin; 1.80A {Bothrops jararaca} SCOP: d.169.1.1 PDB: 1ijk_B 1u0n_B 1u0o_A Length = 133

 Score = 53.2 bits (128), Expect = 1e-08
 Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 8/91 (8%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS--LDSDLANVNDADEHGFIMYQLFWQDP 86
           CP  W  Y  +CY+F +       DA+  C        L ++    +    +  L  ++ 
Sbjct: 2   CPSGWSSYEGNCYKFFQQK-MNWADAERFCSEQAKGGHLVSIKIYSKEKDFVGDLVTKNI 60

Query: 87  QRRKWYF-----GGTQQSPNLWVNEDGTNLN 112
           Q    Y         ++        DG++++
Sbjct: 61  QSSDLYAWIGLRVENKEKQCSSEWSDGSSVS 91

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.8 bits (137), Expect = 1e-08
 Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 5/94 (5%)

Query: 677 PKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENF---NRILTIPNVKV 733
            K        GD + + C      +     +     +       +    N  L    V+V
Sbjct: 251 YKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQV 310

Query: 734 EDQGEYICRASNDRSALESSVTISIQAEPNFTIP 767
           ED G Y C A         ++++ ++        
Sbjct: 311 EDGGVYTCYAMG--ETFNETLSVELKVYNFTLHG 342

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 45.6 bits (108), Expect = 4e-05
 Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 8/73 (10%)

Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269
           + +T+ C                   +  V +     S+   ++  G+L      QVED 
Sbjct: 262 DTLTIRCDTKQQGMTKVWV----SPSNEQVLS---QGSNGSVSVRNGDLFFKKV-QVEDG 313

Query: 270 GSYHCKASNKFGS 282
           G Y C A  +  +
Sbjct: 314 GVYTCYAMGETFN 326

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 45.6 bits (108), Expect = 4e-05
 Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 8/73 (10%)

Query: 483 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 542
           + +T+ C                   +  V +     S+   ++  G+L      QVED 
Sbjct: 262 DTLTIRCDTKQQGMTKVWV----SPSNEQVLS---QGSNGSVSVRNGDLFFKKV-QVEDG 313

Query: 543 GSYHCKASNKFGS 555
           G Y C A  +  +
Sbjct: 314 GVYTCYAMGETFN 326

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 51.9 bits (124), Expect = 3e-08
 Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 14/100 (14%)

Query: 686 AGDKVRLECVAFGYPVPSYNWTRR--------GSPLPRNAYFENFNRI-----LTIPNVK 732
            G  + L+CV       S  W             P+ +N+ ++  +       +T+PNV 
Sbjct: 15  EGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVT 74

Query: 733 VEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKH 772
           ++D+G Y C   +D S     V + + A           H
Sbjct: 75  LQDEGVYKCLHYSD-SVSTKEVKVIVLATMKGEFCRYPSH 113

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 46.1 bits (109), Expect = 3e-06
 Identities = 15/85 (17%), Positives = 34/85 (40%), Gaps = 10/85 (11%)

Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL-----SGGNLIINDPRQ 265
            +TL C      N S +W         +  N    L + ++ L     +  ++ + +   
Sbjct: 18  TLTLKCVTSLRKNSSLQWLTPS--GFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNV-T 74

Query: 266 VEDRGSYHCKASNKFGSIISESVQL 290
           ++D G Y C   +   S+ ++ V++
Sbjct: 75  LQDEGVYKCLHYS--DSVSTKEVKV 97

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 46.1 bits (109), Expect = 3e-06
 Identities = 15/85 (17%), Positives = 34/85 (40%), Gaps = 10/85 (11%)

Query: 484 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL-----SGGNLIINDPRQ 538
            +TL C      N S +W         +  N    L + ++ L     +  ++ + +   
Sbjct: 18  TLTLKCVTSLRKNSSLQWLTPS--GFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNV-T 74

Query: 539 VEDRGSYHCKASNKFGSIISESVQL 563
           ++D G Y C   +   S+ ++ V++
Sbjct: 75  LQDEGVYKCLHYS--DSVSTKEVKV 97

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 56.4 bits (136), Expect = 3e-08
 Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 4/78 (5%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYI 740
             G      C       P   W +    L ++  +       +  LTI  VK +D+GEY 
Sbjct: 495 GEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYT 554

Query: 741 CRASNDRSALESSVTISI 758
            RA N     E  V +++
Sbjct: 555 VRAKNSYGTKEEIVFLNV 572

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 49.1 bits (117), Expect = 4e-06
 Identities = 29/159 (18%), Positives = 48/159 (30%), Gaps = 23/159 (14%)

Query: 135 FSQSLKRWGFERVTGMEPLLFICEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIK 194
              S+K         + PL  I  ++   L      + +    +     D+    P FI 
Sbjct: 434 IRDSIKTKYDAWPEPLPPLGRI--SNYSSLRKHRPQEYS----IRDAFWDRSEAQPRFIV 487

Query: 195 QPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS 254
           +P                   C       P   W K+D          +          +
Sbjct: 488 KPYGTEVGEG-----QSANFYCRVIASSPPVVTWHKDD--------RELKQSVKYMKRYN 534

Query: 255 GGN--LIINDPRQVEDRGSYHCKASNKFGSIISESVQLA 291
           G +  L IN  +  +D+G Y  +A N +G+   E V L 
Sbjct: 535 GNDYGLTINRVKG-DDKGEYTVRAKNSYGT-KEEIVFLN 571

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 48.3 bits (115), Expect = 9e-06
 Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 12/84 (14%)

Query: 483 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGN--LIINDPRQVE 540
                 C       P   W K+D          +          +G +  L IN  +  +
Sbjct: 498 QSANFYCRVIASSPPVVTWHKDD--------RELKQSVKYMKRYNGNDYGLTINRVKG-D 548

Query: 541 DRGSYHCKASNKFGSIISESVQLA 564
           D+G Y  +A N +G+   E V L 
Sbjct: 549 DKGEYTVRAKNSYGT-KEEIVFLN 571

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 54.9 bits (131), Expect = 5e-08
 Identities = 19/126 (15%), Positives = 34/126 (26%), Gaps = 6/126 (4%)

Query: 685 KAGDKVRLECVAF-GYPVPSYNWTRRGSPLPRNAY-FENFNRILTIPNVKVEDQGEYICR 742
             GD V L C         + +W  R      +   +    R L + +V++ D G Y C 
Sbjct: 19  LPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCY 78

Query: 743 ASNDRSALESSVTISIQAEPNF-TIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGEL 801
            +        +V + +   P    +    K   +     W   +                
Sbjct: 79  RAGR---PAGTVHLLVDVPPEEPQLSCFRKSPLSNVVCEWGPRSTPSLTTKAVLLVRKFQ 135

Query: 802 GHQMTD 807
                D
Sbjct: 136 NSPAED 141

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 55.1 bits (133), Expect = 6e-08
 Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 4/101 (3%)

Query: 664 HSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENF- 722
            + F   +      K        G  V+  C A G P P+  W      L          
Sbjct: 377 PNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLT 436

Query: 723 ---NRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQA 760
              +  L +   +V+D G Y+C A+N          + +++
Sbjct: 437 VFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVRS 477

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 10/82 (12%)

Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFT-LSGGNLIINDPRQVED 268
           + +   C A G P P+  W            +L+   S+ R T    G L +    QV+D
Sbjct: 401 HTVQFVCRADGDPPPAILWLSPR-------KHLVSAKSNGRLTVFPDGTLEVRYA-QVQD 452

Query: 269 RGSYHCKASNKFGSIISESVQL 290
            G+Y C A+N  G+  S    L
Sbjct: 453 NGTYLCIAANAGGN-DSMPAHL 473

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 10/82 (12%)

Query: 483 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFT-LSGGNLIINDPRQVED 541
           + +   C A G P P+  W            +L+   S+ R T    G L +    QV+D
Sbjct: 401 HTVQFVCRADGDPPPAILWLSPR-------KHLVSAKSNGRLTVFPDGTLEVRYA-QVQD 452

Query: 542 RGSYHCKASNKFGSIISESVQL 563
            G+Y C A+N  G+  S    L
Sbjct: 453 NGTYLCIAANAGGN-DSMPAHL 473

>1wk1_A Hypothetical protein YK1067A12; lectin C-type domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Caenorhabditis elegans} SCOP: d.169.1.1 Length = 150

 Score = 50.6 bits (121), Expect = 1e-07
 Identities = 11/79 (13%), Positives = 23/79 (29%), Gaps = 6/79 (7%)

Query: 35  QYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFG 94
                          +   A+  C S    LA+    D++ F             +++ G
Sbjct: 5   SSGVKFLTVNDDI-LSMPQARNFCASAGGYLADDLGDDKNNFYSSIA-----ANTQFWIG 58

Query: 95  GTQQSPNLWVNEDGTNLNE 113
             + S   +  + G  +N 
Sbjct: 59  LFKNSDGQFYWDRGQGINP 77

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 54.0 bits (129), Expect = 2e-07
 Identities = 27/208 (12%), Positives = 47/208 (22%), Gaps = 32/208 (15%)

Query: 592 PPTNYPGVNYYWARDYFP----NFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 647
              N P  N  W     P    N  E     F      + F  +     G  + +     
Sbjct: 99  KVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAID----- 153

Query: 648 SDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWT 707
                  P      F      ++               AG     +C A G  V      
Sbjct: 154 EVKVLGHPCTRTPHFLRIQNVEVN--------------AGQFATFQCSAIGRTVAGDRLW 199

Query: 708 RRGSPLP-------RNAYFENFNRILTIPNVKVEDQGEYICRASNDR-SALESSVTISIQ 759
            +G  +        +      F     + N    D G+Y C    +    + +   + ++
Sbjct: 200 LQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVK 259

Query: 760 AEPNFTIPLT-DKHMDNQADLTWTCEAF 786
             P    P            +     + 
Sbjct: 260 EPPVPIAPPQLASVGATYLWIQLNANSI 287

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 49.0 bits (116), Expect = 6e-06
 Identities = 30/177 (16%), Positives = 49/177 (27%), Gaps = 24/177 (13%)

Query: 407 FPEAPKAGDKVRLECVAFGYPVPSYNWTRRG-------------SPLPRNAYFENFNRI- 452
             ++      + +       P+ +  W   G             S    N Y   F  I 
Sbjct: 84  SSKSNSPPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVIT 143

Query: 453 ------LTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDY 506
                 L I  VK+ G    + P  +     + +     T  C A G        + +  
Sbjct: 144 SGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGI 203

Query: 507 VQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
                    I   S +RF     +  + +     D G Y C    + G  IS   +L
Sbjct: 204 DVRDAPLKEIKVTSSRRFI---ASFNVVNT-TKRDAGKYRCMIRTEGGVGISNYAEL 256

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 46.7 bits (110), Expect = 3e-05
 Identities = 14/132 (10%), Positives = 30/132 (22%), Gaps = 9/132 (6%)

Query: 680 FPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEY 739
             ++      + +       P+ +  W   G P       E     L I           
Sbjct: 84  SSKSNSPPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAE-----LAISTFWPNFYQVI 138

Query: 740 ICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQA----DLTWTCEAFGVPDVTYSW 795
               ++      +   + +   P    P   +  + +       T+ C A G        
Sbjct: 139 FEVITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRL 198

Query: 796 FRNGELGHQMTD 807
           +  G        
Sbjct: 199 WLQGIDVRDAPL 210

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 51.8 bits (123), Expect = 2e-07
 Identities = 20/138 (14%), Positives = 36/138 (26%), Gaps = 13/138 (9%)

Query: 626 LYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK 685
           L        D G+Y   V        R             N +           F E  +
Sbjct: 84  LSIGDARMEDTGSYFFRV-------ERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLE 136

Query: 686 AGDKVRLECV----AFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYIC 741
           +G   RL C         P  +++WT               +  LT+     +      C
Sbjct: 137 SGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPET--TRSSELTLTPRPEDHGTNLTC 194

Query: 742 RASNDRSALESSVTISIQ 759
           +     + + +  T+ + 
Sbjct: 195 QMKRQGAQVTTERTVQLN 212

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 41.4 bits (96), Expect = 5e-04
 Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 11/114 (9%)

Query: 695 VAFGYPVPSYNWTRRG-SPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDR----SA 749
           VA   P        +G   L  +   +N +  L+I + ++ED G Y  R    R    S 
Sbjct: 54  VATNNPDRRVKPETQGRFRLLGDVQKKNCS--LSIGDARMEDTGSYFFRVERGRDVKYSY 111

Query: 750 LESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCE----AFGVPDVTYSWFRNG 799
            ++ + + + A          + +++      +C         P +T+SW  N 
Sbjct: 112 QQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNA 165

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 48.7 bits (116), Expect = 3e-07
 Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 14/90 (15%)

Query: 686 AGDKVRLECVAFGYPVPSYNWTRRGSPLP--RNAYFENFNRI-----------LTIPNVK 732
            G    L C        S  W+          +      NRI           +++ +V 
Sbjct: 20  EGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVS 79

Query: 733 VEDQGEYICRASNDRSALESSVTISIQAEP 762
           + D+G+Y C          S   +++   P
Sbjct: 80  LSDEGQYTCSLFTM-PVKTSKAYLTVLGVP 108

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 18/112 (16%)

Query: 459 KMRGPYFIKQPTDVVFDLSKRSIL--NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLI 516
           K++G       T  V      +++      L+C      N S +W      Q  L  +  
Sbjct: 2   KVKGSQGQFPLTQNV------TVVEGGTAILTCRVDQNDNTSLQWSNPA--QQTLYFDDK 53

Query: 517 DPLSDKRFTLSGG-----NLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
             L D R  L        ++ ++D   + D G Y C        + +    L
Sbjct: 54  KALRDNRIELVRASWHELSISVSDV-SLSDEGQYTCSLFTM--PVKTSKAYL 102

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 17/86 (19%), Positives = 27/86 (31%), Gaps = 10/86 (11%)

Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGG-----NLIINDPR 264
               L+C      N S +W      Q  L  +    L D R  L        ++ ++D  
Sbjct: 22  GTAILTCRVDQNDNTSLQWSNPA--QQTLYFDDKKALRDNRIELVRASWHELSISVSDV- 78

Query: 265 QVEDRGSYHCKASNKFGSIISESVQL 290
            + D G Y C        + +    L
Sbjct: 79  SLSDEGQYTCSLFTM--PVKTSKAYL 102

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 50.3 bits (119), Expect = 3e-07
 Identities = 23/167 (13%), Positives = 46/167 (27%), Gaps = 27/167 (16%)

Query: 596 YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC-----------NVQ 644
               N  W ++     + +     +       FS +E  D+G Y C            ++
Sbjct: 24  DSDENLKWEKN--GQELPQKHDKHLVLQD---FSEVE--DSGYYVCYTPASNKNTYLYLK 76

Query: 645 SKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA---GDKVRLECVAFGYPV 701
           ++V            K     +  +                       V L C   G   
Sbjct: 77  ARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTC---GLTD 133

Query: 702 PSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRS 748
            +  W + GS +   +          + N   + +G Y C+ + + S
Sbjct: 134 KTIKWLKDGSII---SPLNATKNTWNLGNNAKDPRGTYQCQGAKETS 177

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 40.2 bits (93), Expect = 9e-04
 Identities = 26/189 (13%), Positives = 49/189 (25%), Gaps = 45/189 (23%)

Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269
             + L+C      + + +W K            +    DK        L++ D  +VED 
Sbjct: 15  TSVELTCPL--DSDENLKWEKNG--------QELPQKHDKH-------LVLQDFSEVEDS 57

Query: 270 GSYHCKASNKFGSII---------SESVQLAFGFIGEFNLKRAPEIGNQ-NWGKAMFCDP 319
           G Y C       +           ++  +       +     A + G+Q N  K +    
Sbjct: 58  GYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVD 117

Query: 320 ----------PTNYPGVNYYWARDYFP-NFVEEDKRVFVSYDGALYFSALEQIDAGNYSC 368
                               W +D    + +   K                +   G Y C
Sbjct: 118 GSRGDGSVLLTCGLTDKTIKWLKDGSIISPLNATKNT-------WNLGNNAKDPRGTYQC 170

Query: 369 NVQSKVSDT 377
               + S+ 
Sbjct: 171 QGAKETSNP 179

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 40.2 bits (93), Expect = 9e-04
 Identities = 26/189 (13%), Positives = 49/189 (25%), Gaps = 45/189 (23%)

Query: 483 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 542
             + L+C      + + +W K            +    DK        L++ D  +VED 
Sbjct: 15  TSVELTCPL--DSDENLKWEKNG--------QELPQKHDKH-------LVLQDFSEVEDS 57

Query: 543 GSYHCKASNKFGSII---------SESVQLAFGFIGEFNLKRAPEIGNQ-NWGKAMFCDP 592
           G Y C       +           ++  +       +     A + G+Q N  K +    
Sbjct: 58  GYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVD 117

Query: 593 ----------PTNYPGVNYYWARDYFP-NFVEEDKRVFVSYDGALYFSALEQIDAGNYSC 641
                               W +D    + +   K                +   G Y C
Sbjct: 118 GSRGDGSVLLTCGLTDKTIKWLKDGSIISPLNATKNT-------WNLGNNAKDPRGTYQC 170

Query: 642 NVQSKVSDT 650
               + S+ 
Sbjct: 171 QGAKETSNP 179

>1byf_A TC14, protein (polyandrocarpa lectin); C-type lectin, galactose-specific, sugar binding protein; 2.00A {Polyandrocarpa misakiensis} SCOP: d.169.1.1 PDB: 1tlg_A* Length = 125

 Score = 48.5 bits (116), Expect = 5e-07
 Identities = 15/78 (19%), Positives = 21/78 (26%), Gaps = 4/78 (5%)

Query: 38  DSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGT- 96
           D    F         DA   C+S    L +    D         F +      W  G   
Sbjct: 2   DYEILFSDET-MNYADAGTYCQSRGMALVSSAMRDSTMVKAILAFTEVKGHDYW-VGADN 59

Query: 97  -QQSPNLWVNEDGTNLNE 113
            Q     ++  DG +L  
Sbjct: 60  LQDGAYNFLWNDGVSLPT 77

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 257

 Score = 50.4 bits (120), Expect = 8e-07
 Identities = 36/193 (18%), Positives = 56/193 (29%), Gaps = 18/193 (9%)

Query: 626 LYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK 685
                + Q  AG Y C      S    + P  PL +     +++   P+   +  P    
Sbjct: 64  FSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEK---PSLSAQPGPTVL- 119

Query: 686 AGDKVRLECVAFGYPVPSYNWTRRGSPLPR---NAYFENFNRILTIPNVKVEDQGEYICR 742
           AG+ V L C +       Y+ +R G    R        N       P       G Y C 
Sbjct: 120 AGESVTLSCSSRSSYD-MYHLSREGEAHERRFSAGPKVNGTFQADFPLGPATHGGTYRCF 178

Query: 743 ASNDRSALESS-----VTISIQAEPNFTIPLTDKHMDNQAD-LTWTCEA----FGVPDVT 792
            S   S  E S     + +S+   P+ + P   +      +       A        D+ 
Sbjct: 179 GSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPSSETGNPRHLHAAAEQKLISEEDLN 238

Query: 793 YSWFRNGELGHQM 805
                 G   H  
Sbjct: 239 LDLVPRGSSSHHH 251

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} Length = 327

 Score = 50.7 bits (121), Expect = 1e-06
 Identities = 32/194 (16%), Positives = 58/194 (29%), Gaps = 33/194 (17%)

Query: 635 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA----GDKV 690
           DAG Y C    K S         P   F      +L             P A       V
Sbjct: 85  DAGTYYCVKFRKGS---------PDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTV 135

Query: 691 RLECVAFGY-PVP-SYNWTRRGSPLP-----------RNAYFENFNRILTIPNVKVEDQG 737
              C + G+ P   +  W + G+ L              +Y  +      +   + +   
Sbjct: 136 SFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHS--TAKVVLTREDVHS 193

Query: 738 EYICRASND---RSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGV--PDVT 792
           + IC  ++       L  +  +S       T+ +T + +  +  +  TC+        + 
Sbjct: 194 QVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKFYPQRLQ 253

Query: 793 YSWFRNGELGHQMT 806
            +W  NG +    T
Sbjct: 254 LTWLENGNVSRTET 267

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} Length = 327

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 29/144 (20%), Positives = 47/144 (32%), Gaps = 29/144 (20%)

Query: 685 KAGDKVRLECVAFGY-PVPSYNWTRRGSPLPR---NAYFENFNRI--------------- 725
            AG+   L C      PV    W R   P      N    +F R+               
Sbjct: 16  AAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFS 75

Query: 726 LTIPNVKVEDQGEYICRASNDRSA-------LESSVTISIQAEPNFTIPLTDKHMDNQAD 778
           ++I N+   D G Y C      S          + +++  +           +       
Sbjct: 76  ISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHT- 134

Query: 779 LTWTCEAFGV--PDVTYSWFRNGE 800
           +++TCE+ G    D+T  WF+NG 
Sbjct: 135 VSFTCESHGFSPRDITLKWFKNGN 158

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 192

 Score = 49.0 bits (116), Expect = 1e-06
 Identities = 18/132 (13%), Positives = 33/132 (25%), Gaps = 10/132 (7%)

Query: 681 PEAP--KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGE 738
           P+    +    + + C       P        + L +    E   +        +     
Sbjct: 9   PKKLAVEPKGSLEVNCST-TCNQPEVGGLE--TSLNKILLDEQ-AQWKHYLVSNISHDTV 64

Query: 739 YICRASNDRSALESSVTISIQAEP-NFTIPLTDKHMDNQADLTWTCEAFGV---PDVTYS 794
             C  +        +  +S+   P    + L    +      T  C    V     +T  
Sbjct: 65  LQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLF 124

Query: 795 WFRNGELGHQMT 806
            FR  E  H  T
Sbjct: 125 LFRGNETLHYET 136

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 47.9 bits (113), Expect = 1e-06
 Identities = 24/137 (17%), Positives = 40/137 (29%), Gaps = 15/137 (10%)

Query: 640 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNF-PKTFPEAPKAGDKVRLECVAFG 698
                +K      + P         +        ++  P T  E   AG  V L+C    
Sbjct: 5   KETAAAKFERQHMDSPDLGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKD 64

Query: 699 YPVPSYNWTRRGSPL--PRNAYFENFNRI-----------LTIPNVKVEDQGEYICRASN 745
           +   S  W+                 NRI           ++I NV + D+GEY C    
Sbjct: 65  HEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSIFT 124

Query: 746 DRSALESSVTISIQAEP 762
                 +   +++   P
Sbjct: 125 M-PVRTAKSLVTVLGIP 140

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 44.0 bits (103), Expect = 3e-05
 Identities = 15/86 (17%), Positives = 27/86 (31%), Gaps = 10/86 (11%)

Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGG-----NLIINDPR 264
             + L C    + + S +W      Q  L       L D R  L        ++ I++  
Sbjct: 54  GTVVLKCQVKDHEDSSLQWSNPA--QQTLYFGEKRALRDNRIQLVTSTPHELSISISNV- 110

Query: 265 QVEDRGSYHCKASNKFGSIISESVQL 290
            + D G Y C        + +    +
Sbjct: 111 ALADEGEYTCSIFTM--PVRTAKSLV 134

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 44.0 bits (103), Expect = 3e-05
 Identities = 15/86 (17%), Positives = 27/86 (31%), Gaps = 10/86 (11%)

Query: 483 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGG-----NLIINDPR 537
             + L C    + + S +W      Q  L       L D R  L        ++ I++  
Sbjct: 54  GTVVLKCQVKDHEDSSLQWSNPA--QQTLYFGEKRALRDNRIQLVTSTPHELSISISNV- 110

Query: 538 QVEDRGSYHCKASNKFGSIISESVQL 563
            + D G Y C        + +    +
Sbjct: 111 ALADEGEYTCSIFTM--PVRTAKSLV 134

>2msb_A Mannose-binding protein-A; lectin; HET: BMA MAN; 1.70A {Rattus rattus} SCOP: d.169.1.1 PDB: 1msb_A 1ytt_A* Length = 115

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 12/76 (15%), Positives = 25/76 (32%), Gaps = 8/76 (10%)

Query: 38  DSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGT- 96
              +          +  K  C  L   +A   +A+E+  I      Q+  +   + G T 
Sbjct: 3   KKFFVTNHER-MPFSKVKALCSELRGTVAIPRNAEENKAI------QEVAKTSAFLGITD 55

Query: 97  QQSPNLWVNEDGTNLN 112
           + +   ++   G  L 
Sbjct: 56  EVTEGQFMYVTGGRLT 71

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} Length = 401

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 10/84 (11%), Positives = 26/84 (30%), Gaps = 5/84 (5%)

Query: 726 LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTI--PLTDKHMDNQADLTWTC 783
             +P V+   +G Y+          + ++ +++   P  ++      +    +A     C
Sbjct: 256 FWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLC 315

Query: 784 EAFG---VPDVTYSWFRNGELGHQ 804
                     +   W   G  G +
Sbjct: 316 LVSHFYPSGGLEVEWELRGGPGGR 339

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 6/82 (7%)

Query: 687 GDKVRLECVAFGYPVPSYNWTR-RGSPLPRNAYFENF----NRILTIPNVKVEDQGEYIC 741
           G    L+C A    + S +W    G+ +   AY        +  L   NV V+D G Y C
Sbjct: 356 GMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTC 414

Query: 742 RASNDRSALESSVTISIQAEPN 763
             SN      +S T+++    +
Sbjct: 415 MVSNSVGNTTASATLNVTGTHH 436

>1rdl_1 SUB-MBP-C, mannose-binding protein-C; C-type lectin, calcium-binding protein; HET: MMA; 1.70A {Rattus rattus} SCOP: d.169.1.1 PDB: 1rdj_1* 1rdk_1* 1rdi_1* 1rdm_1* 1rdn_1* 1rdo_1 1bv4_A 1kza_1* 1kzb_1* 1kzc_1* 1kzd_1* 1kze_1* Length = 113

 Score = 45.3 bits (108), Expect = 5e-06
 Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 8/74 (10%)

Query: 40  CYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGT-QQ 98
            +          N AK  C  L   +A   +A+E+  I      Q+  +   + G T Q+
Sbjct: 3   YFMSSVRR-MPLNRAKALCSELQGTVATPRNAEENRAI------QNVAKDVAFLGITDQR 55

Query: 99  SPNLWVNEDGTNLN 112
           + N++ +  G  + 
Sbjct: 56  TENVFEDLTGNRVR 69

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 22/122 (18%), Positives = 38/122 (31%), Gaps = 12/122 (9%)

Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASND 746
              V L C      V  Y   +  S   ++        +L IP +K    G Y C   N 
Sbjct: 22  EKPVTLRCQG-PPGVDLYRLEKLSSSRYQDQ------AVLFIPAMKRSLAGRYRCSYQNG 74

Query: 747 RSALESSVTISIQAEPNFTIP----LTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELG 802
                 S  + + A   F  P         + +  D+T  C+        ++ ++ G+  
Sbjct: 75  SLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQT-RYGFDQFALYKEGDPA 133

Query: 803 HQ 804
             
Sbjct: 134 PY 135

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184

 Score = 43.6 bits (103), Expect = 6e-05
 Identities = 26/133 (19%), Positives = 41/133 (30%), Gaps = 18/133 (13%)

Query: 626 LYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP- 684
           L+  A+++  AG Y C+ Q+                   S+  +L     F K    A  
Sbjct: 54  LFIPAMKRSLAGRYRCSYQN------------GSLWSLPSDQLELVATGVFAKPSLSAQP 101

Query: 685 ----KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYI 740
                +G  V L+C         +   + G P P       +     I  V     G Y 
Sbjct: 102 GPAVSSGGDVTLQCQTRYGFD-QFALYKEGDPAPYKNPERWYRASFPIITVTAAHSGTYR 160

Query: 741 CRASNDRSALESS 753
           C + + R     S
Sbjct: 161 CYSFSSRDPYLWS 173

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 7/81 (8%)

Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-----YFENFNRILTIPNVKVEDQGEYIC 741
           G    L+C     P+ S  W      +  +A          +  L   +V + D G Y C
Sbjct: 367 GRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTC 424

Query: 742 RASNDRSALESSVTISIQAEP 762
             +N      +S  +++    
Sbjct: 425 MVTNVAGNSNASAYLNVSTAG 445

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 25/185 (13%), Positives = 51/185 (27%), Gaps = 30/185 (16%)

Query: 590 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQ----- 644
           C          Y   ++  P   +    +           ++ +  AG Y C  +     
Sbjct: 26  CQGTL--EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGW 83

Query: 645 SKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSY 704
           S+ SD        PL++     + +                 G  V L C +   P+ ++
Sbjct: 84  SQPSD--------PLELVMTGAYSKPTLSALPSPLVTS----GKSVTLLCQS-RSPMDTF 130

Query: 705 NWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQGEYICRASNDRSALESS-----V 754
              +  +  P          +       +  V     G Y C +S+  S    S     +
Sbjct: 131 LLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPL 190

Query: 755 TISIQ 759
            + + 
Sbjct: 191 ELIVS 195

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 9/121 (7%)

Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLP---RNAYFENFNRILTIPNVKVEDQGEYICRA 743
           G+ V + C         Y   +  SP P   +N          +IP++  +  G Y C  
Sbjct: 19  GNSVTIWCQG-TLEAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYY 77

Query: 744 SNDRSALESSVTISIQAEPNFTIP----LTDKHMDNQADLTWTCEAFGVPDVTYSWFRNG 799
            +     + S  + +     ++ P    L    + +   +T  C++   P  T+   +  
Sbjct: 78  RSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQS-RSPMDTFLLCKER 136

Query: 800 E 800
            
Sbjct: 137 A 137

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 Length = 434

 Score = 46.4 bits (110), Expect = 3e-05
 Identities = 62/377 (16%), Positives = 102/377 (27%), Gaps = 75/377 (19%)

Query: 485 ITLSCYAGGYPNPSY--EWFKEDYVQDRLVANLIDPLSDK---------RFTLSGGN--- 530
           + +SC A GY   +Y   W K+   Q       I+P S           + TL+      
Sbjct: 17  VKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSN 76

Query: 531 ---LIINDPRQVEDRGSYHCKASNKF---GSIISESVQLAFGFIGEFNLKRAPEIGNQNW 584
              + ++     +D   Y+C    +    G   + +V  A            P +     
Sbjct: 77  TANIHLSSLT-SDDSAVYYCVREGEVPYWGQGTTVTVSSAK--------TTPPSVYPLAP 127

Query: 585 GKAMFCDPPTNYPGVNYYWARDYFPNFVE---------EDKRVF-VSYDGALYF--SAL- 631
           G        TN         + YFP  V               F       LY   S++ 
Sbjct: 128 G----SAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVT 183

Query: 632 ---EQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQL---KFPNNFPKTFPEAPK 685
                  +   +CNV    S T  +    P           +        FP    +   
Sbjct: 184 VPSSPRPSETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLL 243

Query: 686 AGDKVRLECVAFGYPVPSY----NWTRRGSPL---PRNAYFENFNR------ILTIPNVK 732
                ++ CV             +W      +         E FN        L I +  
Sbjct: 244 ITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQD 303

Query: 733 VEDQGEYICRASNDRSA----LESSVTISIQAEPNFTI--PLTDKHMDNQADLTWTCEAF 786
             +  E+ CR ++           S T      P      P  ++   ++  L  TC   
Sbjct: 304 WLNGKEFKCRVNSAAFPAPIEKTISKTKGKPRAPQVYTIPPPKEQMAKDKVSL--TCMIT 361

Query: 787 GV--PDVTYSWFRNGEL 801
                D+T  W  +G+ 
Sbjct: 362 DFFPEDITVEWQSDGQA 378

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242

 Score = 44.9 bits (106), Expect = 5e-05
 Identities = 26/181 (14%), Positives = 42/181 (23%), Gaps = 23/181 (12%)

Query: 590 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSD 649
           C        V Y    +     V+  K          Y   +    AG YSC  +     
Sbjct: 28  CQGNY--GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRV---- 81

Query: 650 TGRNGPFFPLKVFPHSNFQQLKFPNNFPKTF-----PEAPKAGDKVRLECVAFGYPVPSY 704
                          SN   L     +              +G+KV   C         +
Sbjct: 82  --------GELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRL-DTATSMF 132

Query: 705 NWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDR---SALESSVTISIQAE 761
              + G        +        +  V    +G Y C  S +    S     V + +  +
Sbjct: 133 LLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGD 192

Query: 762 P 762
            
Sbjct: 193 I 193

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 18/125 (14%), Positives = 32/125 (25%), Gaps = 9/125 (7%)

Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLP---RNAYFENFNRILTIPNVKVEDQGEYICRA 743
             +V + C    Y    Y     GS                   IP++     G+Y C  
Sbjct: 21  EKQVTICCQG-NYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIY 79

Query: 744 SNDRSALESSVTISIQAEPNFTIP----LTDKHMDNQADLTWTCEAFGVPDVTYSWFRNG 799
                  E S  + +     +  P         + +   +T+ C         +   + G
Sbjct: 80  RVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRL-DTATSMFLLLKEG 138

Query: 800 ELGHQ 804
              H 
Sbjct: 139 RSSHV 143

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196

 Score = 44.1 bits (104), Expect = 5e-05
 Identities = 24/178 (13%), Positives = 42/178 (23%), Gaps = 32/178 (17%)

Query: 590 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSD 649
           C          Y   ++  P   +    +           ++ +  AG Y C   S    
Sbjct: 26  CQGTL--EAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYS---- 79

Query: 650 TGRNGPFFPLKVFPHSNFQQLKFPNNFPKTF-----PEAPKAGDKVRLECVAFGYPV--- 701
                   P      S+  +L     + K            +G+ V L+C +        
Sbjct: 80  --------PAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGSRLRFDRFI 131

Query: 702 ------PSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESS 753
                    +WT      P   +   F     +  V    +    C  S        S
Sbjct: 132 LTEEGDHKLSWTLDSQLTPSGQFQALF----PVGPVTPSHRWMLRCYGSRRHILQVWS 185

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196

 Score = 40.6 bits (95), Expect = 8e-04
 Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 9/127 (7%)

Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLP---RNAYFENFNRILTIPNVKVEDQGEYICRA 743
           G+ V + C         Y   + GSP P   +N          +IP++     G Y C  
Sbjct: 19  GNSVTIRCQG-TLEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYY 77

Query: 744 SNDRSALESSVTISIQAEPNFTIP----LTDKHMDNQADLTWTCEAFGVPDVTYSWFRNG 799
            +     E S  + +     +  P    L    + +  ++T  C +  +    +     G
Sbjct: 78  YSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGS-RLRFDRFILTEEG 136

Query: 800 ELGHQMT 806
           +     T
Sbjct: 137 DHKLSWT 143

>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 105

 Score = 42.1 bits (98), Expect = 6e-05
 Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 11/82 (13%)

Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS-GGNLIINDPRQVED 268
             + L+C    YP     W   D          I    D +   S   +L + +  ++E 
Sbjct: 22  TTVILTCPQ--YPGSEILWQHND--------KNIGGDEDDKNIGSDEDHLSLKEFSELEQ 71

Query: 269 RGSYHCKASNKFGSIISESVQL 290
            G Y C          +  + L
Sbjct: 72  SGYYVCYPRGSKPEDANFYLYL 93

>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 105

 Score = 42.1 bits (98), Expect = 6e-05
 Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 11/82 (13%)

Query: 483 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS-GGNLIINDPRQVED 541
             + L+C    YP     W   D          I    D +   S   +L + +  ++E 
Sbjct: 22  TTVILTCPQ--YPGSEILWQHND--------KNIGGDEDDKNIGSDEDHLSLKEFSELEQ 71

Query: 542 RGSYHCKASNKFGSIISESVQL 563
            G Y C          +  + L
Sbjct: 72  SGYYVCYPRGSKPEDANFYLYL 93

>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein, membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A {Homo sapiens} Length = 164

 Score = 43.3 bits (102), Expect = 7e-05
 Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 5/75 (6%)

Query: 40  CYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGT-QQ 98
            Y + + P      A+  C+   +DL  + +  E  ++   L     +   W  G     
Sbjct: 2   TYHYSEKP-MNWQRARRFCRDNYTDLVAIQNKAEIEYLEKTL--PFSRSYYW-IGIRKIG 57

Query: 99  SPNLWVNEDGTNLNE 113
               WV  + +   E
Sbjct: 58  GIWTWVGTNKSLTEE 72

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A Length = 162

 Score = 42.9 bits (101), Expect = 8e-05
 Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 5/75 (6%)

Query: 40  CYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGT-QQ 98
            Y +      + N ++  C++  +DL  + + +E  ++   L         W  G     
Sbjct: 2   TYHYSTKA-YSWNISRKYCQNRYTDLVAIQNKNEIDYLNKVL--PYYSSYYW-IGIRKNN 57

Query: 99  SPNLWVNEDGTNLNE 113
               WV       NE
Sbjct: 58  KTWTWVGTKKALTNE 72

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 18/125 (14%), Positives = 32/125 (25%), Gaps = 9/125 (7%)

Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLP---RNAYFENFNRILTIPNVKVEDQGEYICRA 743
             +V + C    Y    Y     GS                   IP++     G+Y C  
Sbjct: 18  EKQVTICCQG-NYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIY 76

Query: 744 SNDRSALESSVTISIQAEPNFTIP----LTDKHMDNQADLTWTCEAFGVPDVTYSWFRNG 799
                  E S  + +     +  P         + +   +T+ C         +   + G
Sbjct: 77  RVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRL-DTATSMFLLLKEG 135

Query: 800 ELGHQ 804
              H 
Sbjct: 136 RSSHV 140

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 26/178 (14%), Positives = 41/178 (23%), Gaps = 27/178 (15%)

Query: 590 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSD 649
           C        V Y    +     V+  K          Y   +    AG YSC  +     
Sbjct: 25  CQGNY--GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRV---- 78

Query: 650 TGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP-----KAGDKVRLECVAFGYPVPSY 704
                          SN   L     +              +G+KV   C         +
Sbjct: 79  --------GELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTATS-MF 129

Query: 705 NWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRS-------ALESSVT 755
              + G        +        +  V    +G Y C  S +          ++  VT
Sbjct: 130 LLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT 187

>1h8u_A MBP, eosinophil granule major basic protein 1; lectin, eosinophil granule protein, EMBP; 1.8A {Homo sapiens} SCOP: d.169.1.1 PDB: 2brs_A* Length = 117

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 7/77 (9%)

Query: 40  CYRFVKSPLKTRNDAKLNCKSLDS-DLANVNDADEHGFIMYQLFWQDPQRRKWYFGGT-- 96
            Y  V+S  +T + A   C+     +L ++++ + +  I         Q + W  GG   
Sbjct: 3   RYLLVRSL-QTFSQAWFTCRRCYRGNLVSIHNFNINYRI-QCSVSALNQGQVW-IGGRIT 59

Query: 97  -QQSPNLWVNEDGTNLN 112
                  +   DG+  N
Sbjct: 60  GSGRCRRFQWVDGSRWN 76

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H* Length = 457

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 39/200 (19%), Positives = 52/200 (26%), Gaps = 33/200 (16%)

Query: 632 EQIDAGNYSCNVQSKVSDT--------GRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEA 683
             +    Y CNV  K S+T                    P            FP    + 
Sbjct: 201 SSLGTQTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDT 260

Query: 684 PKAGDKVRLECVAFGYPVPSY----NWTRRGSPLPRNAYFENFNRI----------LTIP 729
                   + CV             NW   G  +  NA  +               LT+ 
Sbjct: 261 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEV-HNAKTKPREEQYNSTYRVVSVLTVL 319

Query: 730 NVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTI------PLTDKHMDNQADLTWTC 783
           +    +  EY C+ SN         TIS               P  D+   NQ  L  TC
Sbjct: 320 HQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSL--TC 377

Query: 784 EAFGV--PDVTYSWFRNGEL 801
              G    D+   W  NG+ 
Sbjct: 378 LVKGFYPSDIAVEWESNGQP 397

>3fd4_A Glycoprotein GP42; C type lectin, virus entry, membrane fusion, HOST-virus interaction, lectin, membrane, transmembrane, viral protein; 2.40A {Human herpesvirus 4} PDB: 1kg0_C Length = 191

 Score = 41.8 bits (97), Expect = 3e-04
 Identities = 12/84 (14%), Positives = 23/84 (27%), Gaps = 4/84 (4%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
             ++   Y+  C+ F K    T N     C  L           +   ++ +        
Sbjct: 72  TREYTFSYKGCCFYFTKK-KHTWNGCFQACAELYPCTYFYGPTPDILPVVTR---NLNAI 127

Query: 89  RKWYFGGTQQSPNLWVNEDGTNLN 112
              + G  +     W + DG    
Sbjct: 128 ESLWVGVYRVGEGNWTSLDGGTFK 151

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 40.2 bits (93), Expect = 3e-04
 Identities = 18/107 (16%), Positives = 33/107 (30%), Gaps = 12/107 (11%)

Query: 456 PNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPN---PSYEWFKEDYVQDRLV 512
              +     F+K+P  V  +  K     D  +     G      P+ +WFK  +++    
Sbjct: 6   SGAEEPTGVFLKKPDSVSVETGK-----DAVVVAKVNGKELPDKPTIKWFKGKWLELGSK 60

Query: 513 ANL---IDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI 556
           +          +    +    L I     + DRG Y  +   K    
Sbjct: 61  SGARFSFKESHNSASNVYTVELHIGKV-VLGDRGYYRLEVKAKDTCD 106

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 40.2 bits (93), Expect = 3e-04
 Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 12/109 (11%)

Query: 181 ENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPN---PSYEWFKEDYVQDR 237
            +         F+K+P  V  +  K     D  +     G      P+ +WFK  +++  
Sbjct: 4   GSSGAEEPTGVFLKKPDSVSVETGK-----DAVVVAKVNGKELPDKPTIKWFKGKWLELG 58

Query: 238 LVANL---IDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI 283
             +          +    +    L I     + DRG Y  +   K    
Sbjct: 59  SKSGARFSFKESHNSASNVYTVELHIGKV-VLGDRGYYRLEVKAKDTCD 106

>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF, protein-protein complex, IMM system; HET: NAG FUL; 2.80A {Homo sapiens} SCOP: b.1.1.1 Length = 120

 Score = 40.2 bits (93), Expect = 3e-04
 Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 11/84 (13%)

Query: 686 AGDKVRLEC-VAFGYPVPSYNWTR----RGSPLP--RNAYFENFNR---ILTIPNVKVED 735
           AGD   LEC V +    P   W +        L   + ++ E  N    IL    V   D
Sbjct: 25  AGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPND 84

Query: 736 QGEYICRASNDRSALES-SVTISI 758
            G Y C A+   + +ES S T+ +
Sbjct: 85  NGSYRCSANFQSNLIESHSTTLYV 108

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A* Length = 214

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 23/130 (17%), Positives = 36/130 (27%), Gaps = 16/130 (12%)

Query: 687 GDKVRLECVAFGYPVPS---YNWTRRGSPLPRNAYFENFN-------RILTIPNVKVEDQ 736
           G +  L C   G    S   + WT            E           +L          
Sbjct: 19  GSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHG 78

Query: 737 GEYICRASNDRSALESSVTISIQAEPN----FTIPLTDKHMDNQADLTWTCEA--FGVPD 790
             + C A+   S    + T+S            +P   + +     +T TC A  F   D
Sbjct: 79  KTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKD 138

Query: 791 VTYSWFRNGE 800
           V   W +  +
Sbjct: 139 VLVRWLQGSQ 148

>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A Length = 157

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 11/71 (15%)

Query: 40  CYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL------FW---QDPQRRK 90
            Y        T ++A   C+   + L  + + +E  ++   L      +W   +      
Sbjct: 2   SYNTSTEA-MTYDEASAYCQQRYTHLVAIQNKEEIEYLNSILSYSPSYYWIGIRK-VNNV 59

Query: 91  WYFGGTQQSPN 101
           W + GTQ+   
Sbjct: 60  WVWVGTQKPLT 70

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 5e-04
 Identities = 84/673 (12%), Positives = 165/673 (24%), Gaps = 234/673 (34%)

Query: 158 EASIQKLHY--LLND-------DRTYQYGMDIENP-------DKIPRGPYFIKQPTDVVF 201
           E    +  Y  +L+        +   +   D+          D I      +   T  +F
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG-TLRLF 68

Query: 202 DLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIIN 261
                    +  +  +       +Y++         +      P    R  +   + + N
Sbjct: 69  WTLLSK--QEEMVQKFVEEVLRINYKFLMS-----PIKTEQRQPSMMTRMYIEQRDRLYN 121

Query: 262 D-----PRQVEDRGSYHCKASNK-----------------FG-SII------SESVQLAF 292
           D        V  R   + K                      G + +      S  VQ   
Sbjct: 122 DNQVFAKYNVS-RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180

Query: 293 GF------IGEFN--------LKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNF 338
            F      +   N        L++     + NW      D  +N   +  +  +      
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR--SDHSSNIK-LRIHSIQAELRRL 237

Query: 339 VEEDKRVFVSYDGALYFSAL---------EQIDAGNYSCNV-----QSKVSD--TGRNGP 382
           ++             Y + L         +  +A N SC +       +V+D  +     
Sbjct: 238 LKSKP----------YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287

Query: 383 FFPL----KVFPHSNFQQL--KFPNNFPKTFPEAPKAGDKVRLECVA---FGYPVPSYNW 433
              L            + L  K+ +  P+  P      +  RL  +A           NW
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347

Query: 434 TRRGSPLPRNAYFENFNRILTI------PNVKMRGPY-----FIKQPTDVVFDLSKRSIL 482
                   ++   +    I+        P    R  +     F   P             
Sbjct: 348 --------KHVNCDKLTTIIESSLNVLEPAE-YRKMFDRLSVF---PPSA---------- 385

Query: 483 NDI---TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS-----DKRFTLSGGNLIIN 534
             I    LS            WF        +V N +   S      K  T+S  ++ + 
Sbjct: 386 -HIPTILLSLI----------WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434

Query: 535 DPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPT 594
              ++E+  + H                     +  +N+ +  +    +           
Sbjct: 435 LKVKLENEYALHRS------------------IVDHYNIPKTFD----SDDLIP--PYLD 470

Query: 595 NYPGVNYYW----------ARDYFPNFVEEDKRVFVSYDGALYFSALEQ-IDAGNYSCNV 643
            Y    +Y             +    F    + VF+ +     F  LEQ I   + + N 
Sbjct: 471 QY----FYSHIGHHLKNIEHPERMTLF----RMVFLDFR----F--LEQKIRHDSTAWNA 516

Query: 644 QSKVSDT-----------GRNGPFFPLKV-----F-----------PHSNFQQLKFPNNF 676
              + +T             N P +   V     F            +++  ++      
Sbjct: 517 SGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAED 576

Query: 677 PKTFPEAPKAGDK 689
              F EA K   +
Sbjct: 577 EAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 6e-04
 Identities = 63/469 (13%), Positives = 124/469 (26%), Gaps = 162/469 (34%)

Query: 18  FSQTIDELE-LRCPQHWVQYRDSCYRFVKSPLKTR--------NDAK------LNCKSL- 61
           ++   D    ++   H +Q      R +KS              +AK      L+CK L 
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELR--RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270

Query: 62  ---DSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQ-QSPNL---WVNEDGTNLNEL 114
                 + +   A         +              T  +  +L   +++         
Sbjct: 271 TTRFKQVTDFLSAAT----TTHISLDHHSM-----TLTPDEVKSLLLKYLD--------C 313

Query: 115 DAAFLPEPADNV---QRDYLAYSFSQSLKRWGFERVTGMEPLLFICEASIQKLHYLLNDD 171
               LP         +   +A S    L  W   +    + L  I E+S+  L     + 
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP--AEY 371

Query: 172 RTYQYGMDIENPD-KIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFK 230
           R     + +  P   I         PT ++      S++                  WF 
Sbjct: 372 RKMFDRLSVFPPSAHI---------PTILL------SLI------------------WFD 398

Query: 231 EDYVQDRLVANLIDPLS-----DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIIS 285
                  +V N +   S      K  T+S  ++ +    ++E+  + H            
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS---------- 448

Query: 286 ESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYW----------ARDYF 335
                    +  +N+ +  +    +            Y    +Y             +  
Sbjct: 449 --------IVDHYNIPKTFD----SDDLIP--PYLDQY----FYSHIGHHLKNIEHPERM 490

Query: 336 PNFVEEDKRVFVSYDGALYFSALEQ-IDAGNYSCNVQSKVSDT-----------GRNGPF 383
             F    + VF+ +     F  LEQ I   + + N    + +T             N P 
Sbjct: 491 TLF----RMVFLDFR----F--LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540

Query: 384 FPLKV-----F-----------PHSNFQQLKFPNNFPKTFPEAPKAGDK 416
           +   V     F            +++  ++         F EA K   +
Sbjct: 541 YERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A Length = 198

 Score = 40.6 bits (95), Expect = 7e-04
 Identities = 25/178 (14%), Positives = 41/178 (23%), Gaps = 31/178 (17%)

Query: 590 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSD 649
           C          Y   R+             +   G     ++     G Y C   S    
Sbjct: 26  CQGGQ--ETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSD--- 80

Query: 650 TGRNGPFFPLKVFPHSNFQQLKFPNNFPK-----TFPEAPKAGDKVRLECVAFGYPV--- 701
                          S+  +L     + K            +G  V L+C +        
Sbjct: 81  --------TAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDSQVAFDGFI 132

Query: 702 ------PSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESS 753
                   +       P  R +    F    ++  V    +  Y C A +  S  E S
Sbjct: 133 LCKEGEDEHPQCLNSQPHARGSSRAIF----SVGPVSPSRRWWYRCYAYDSNSPYEWS 186

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	813
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	100.0
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	100.0
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	100.0
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	100.0
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	100.0
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	100.0
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	100.0
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	100.0
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	100.0
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	100.0
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	100.0
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	100.0
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	100.0
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	100.0
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	100.0
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	100.0
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	100.0
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	100.0
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	100.0
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	100.0
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	100.0
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	100.0
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	100.0
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	100.0
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	100.0
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	100.0
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	100.0
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	100.0
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	100.0
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	100.0
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	100.0
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	100.0
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	100.0
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	100.0
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	100.0
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	100.0
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	100.0
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	100.0
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	100.0
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	100.0
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	100.0
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	100.0
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	100.0
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	100.0
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	100.0
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	100.0
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.98
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.98
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.98
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.97
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.97
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.97
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.97
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.97
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.97
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.97
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.97
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.97
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.97
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.97
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.97
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.97
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.97
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.97
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.97
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.97
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.97
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.97
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.97
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.96
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.96
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.96
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.96
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.96
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.96
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.96
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.96
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.96
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.96
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.95
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.95
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.95
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.95
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.95
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.95
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.95
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.94
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.94
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.94
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.94
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.94
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.93
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.93
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.92
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.92
2py2_A	136	Antifreeze protein type II; type II antifreeze pro	99.92
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.92
3vpp_A	132	C-type lectin domain family 9 member A; dendritic	99.92
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.91
3bx4_B	146	Aggretin beta chain; toxin; 1.70A {Agkistrodon rho	99.91
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.91
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.91
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.91
1qdd_A	144	Lithostathine; pancreatic stone inhibitor, metal b	99.91
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.91
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.91
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.91
1gz2_A	142	Ovocleidin-17, OC-17 ovocleidin; structural protei	99.9
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.9
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.9
1uv0_A	149	Pancreatitis-associated protein 1; lectin, C-type,	99.9
2kv3_A	131	Regenerating islet-derived protein 4; GISP, C-type	99.9
1tdq_B	130	Aggrecan core protein; extracellular matrix, lecti	99.9
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.9
2c6u_A	122	CLEC1B protein; lectin, rhodocytin, aggretin, C-ty	99.9
1tn3_A	137	Tetranectin; plasminogen binding, kringle 4, C-typ	99.9
2ox9_A	140	Collectin placenta 1; C-type lectin, sugar binding	99.9
1ypq_A	135	Oxidised low density lipoprotein (lectin-like) rec	99.9
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.9
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.9
1jwi_B	125	Platelet aggregation inducer; domain swapping, C-t	99.9
1jzn_A	135	Galactose-specific lectin; C-type lectin, protein-	99.9
2e3x_C	122	Coagulation factor X-activating enzyme light CHAI;	99.9
3rs1_A	122	C-type lectin domain family 2 member I; C-type lec	99.9
1wmz_A	140	Lectin CEL-I, N-acetyl-D-galactosamine-specific C-	99.9
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.9
1dv8_A	128	Asialoglycoprotein receptor 1; C-type lectin CRD,	99.9
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.9
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.89
1ukm_B	128	EMS16 B chain, EMS16 subunit B; domain swapping, C	99.89
3g8k_A	130	Lectin-related NK cell receptor LY49L1; natural ki	99.89
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.89
2bpd_A	142	Dectin-1; receptor, beta-glucan, fungal recognitio	99.89
1oz7_B	123	Echicetin B-chain; platelet aggregation, dimer, to	99.89
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.89
3bx4_A	136	Aggretin alpha chain; toxin; 1.70A {Agkistrodon rh	99.89
3ubu_A	131	Agglucetin subunit alpha-1; platelet inhibiting, a	99.89
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.89
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.89
3c22_A	156	C-type lectin domain family 4 member K; coiled coi	99.89
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.89
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.89
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.89
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.89
1sb2_A	133	Rhodocetin alpha subunit; C-type lectin, domain sw	99.89
2afp_A	129	Protein (SEA raven type II antifreeze protein); re	99.89
2zib_A	133	Type II antifreeze protein; thermal hysteresis, le	99.89
2b6b_D	175	CD209 antigen; cryo EM dengue CRD DC-SIGN, icosahe	99.89
1ukm_A	134	EMS16 A chain, EMS16 subunit A; domain swapping, C	99.89
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.89
3kqg_A	182	Langerin, C-type lectin domain family 4 member K;	99.89
1fvu_B	125	Botrocetin beta chain; VON WILLBRAND factor modula	99.89
1umr_C	125	Convulxin beta, CVX beta; lectin, C-type lectin, p	99.89
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.89
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.89
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.89
1sl6_A	184	C-type lectin DC-signr; sugar binding protein; HET	99.89
1fvu_A	133	Botrocetin alpha chain; VON WILLBRAND factor modul	99.89
1egg_A	147	Macrophage mannose receptor; C-type lectin, sugar	99.89
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.89
1j34_B	123	Coagulation factor IX-binding protein B chain; mag	99.89
2vuv_A	129	Codakine; sugar-binding protein, C-type, lectin, m	99.89
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.89
3ubu_B	126	Agglucetin subunit beta-2; platelet inhibiting, ag	99.89
3bdw_A	123	Natural killer cells antigen CD94; NK cells, recep	99.89
1c3a_B	125	Flavocetin-A: beta subunit; C-type lectin-like dom	99.89
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.89
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.89
1c3a_A	135	Flavocetin-A: alpha subunit; C-type lectin-like do	99.89
1jwi_A	131	Bitiscetin; domain swapping, C-type lectin, toxin;	99.89
1hq8_A	123	NKG2-D; homodimer, CIS-proline, apoptosis; 1.95A {	99.89
2h2t_B	175	Low affinity immunoglobulin epsilon FC receptor (	99.89
1oz7_A	131	Echicetin A-chain; platelet aggregation, dimer, to	99.89
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.89
1htn_A	182	Tetranectin; plasminogen binding, kringle 4, alpha	99.89
2xr6_A	170	CD209 antigen; sugar binding protein, carbohydrate	99.89
1j34_A	129	Coagulation factor IX-binding protein A chain; mag	99.88
3bdw_B	120	NKG2-A/NKG2-B type II integral membrane protein; N	99.88
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.88
1sb2_B	129	Rhodocetin beta subunit; C-type lectin, domain swa	99.88
1umr_A	135	Convulxin alpha, CVX alpha; lectin, C-type lectin,	99.88
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.88
2yhf_A	118	C-type lectin domain family 5 member A; immune sys	99.88
3gpr_D	124	Rhodocetin subunit delta; disulfide bond, lectin,	99.88
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.88
3gpr_C	134	Rhodocetin subunit gamma; disulfide bond, lectin,	99.88
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.88
3m9z_A	139	Killer cell lectin-like receptor subfamily B MEMB;	99.88
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.88
3alu_A	157	Lectin CEL-IV, C-type; C-type lectin, raffinose, s	99.88
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.88
3ff7_C	112	Killer cell lectin-like receptor subfamily G membe	99.88
1mpu_A	138	NKG2-D type II integral membrane protein; C-type l	99.88
2e3x_B	134	Coagulation factor X-activating enzyme light CHAI;	99.88
1hup_A	141	Mannose-binding protein; alpha-helical coiled-coil	99.88
2ls8_A	156	C-type lectin domain family 4 member D; structural	99.8
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.88
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.88
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.88
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.88
3ff9_A	115	Killer cell lectin-like receptor subfamily G membe	99.88
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.87
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.87
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.87
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.87
1rtm_1	149	Mannose-binding protein-A; lectin; 1.80A {Rattus n	99.87
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.87
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.87
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.87
3hup_A	130	Early activation antigen CD69; C-type lectin-like	99.87
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.87
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.87
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.87
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.87
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.87
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.87
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.87
1fm5_A	199	Early activation antigen CD69; C-type lectin-like	99.87
1buu_A	168	Protein (mannose-binding protein A); lectin, HOST	99.86
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.86
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.86
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.86
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.86
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.86
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.86
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.86
3c8j_A	203	Natural killer cell receptor LY49C; MHC, virus, im	99.86
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.86
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.86
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.85
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.85
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.85
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.85
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.85
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.84
3g8l_A	190	Lectin-related NK cell receptor LY49L1; natural ki	99.84
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.84
2msb_A	115	Mannose-binding protein-A; lectin; HET: BMA MAN; 1	99.84
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.84
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.84
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.84
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.84
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.84
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.84
1wk1_A	150	Hypothetical protein YK1067A12; lectin C-type doma	99.83
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.83
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.83
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.83
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.83
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.83
1rdl_1	113	SUB-MBP-C, mannose-binding protein-C; C-type lecti	99.83
1pwb_A	177	SP-D, PSP-D, pulmonary surfactant-associated prote	99.83
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.83
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.83
3pbf_A	148	Pulmonary surfactant-associated protein A; collect	99.83
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.83
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.83
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.82
1h8u_A	117	MBP, eosinophil granule major basic protein 1; lec	99.82
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.82
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.82
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.82
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.82
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.82
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.82
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.82
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.82
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.82
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.81
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.81
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.81
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.81
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.81
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.81
1byf_A	125	TC14, protein (polyandrocarpa lectin); C-type lect	99.81
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.81
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.81
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.81
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.8
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.8
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.8
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.8
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.8
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.79
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.79
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.78
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.78
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.78
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.78
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.77
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.77
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.77
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.77
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.77
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.76
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.76
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.76
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.76
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.76
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.76
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.76
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.76
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.76
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.75
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.75
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.75
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.75
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.75
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.75
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.75
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.75
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.75
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.75
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.74
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.74
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.74
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.74
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.74
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.74
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.74
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.74
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.74
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.74
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.74
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.73
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.73
3cfw_A	164	L-selectin; EGF, cell adhesion, EGF-like domain, g	99.73
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.73
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.73
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.72
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.72
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.72
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.72
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	99.72
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.72
1g1t_A	157	E-selectin; EGF, adhesion molecule, SLEX, immune s	99.72
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.72
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.72
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.72
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.72
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.72
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.72
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.72
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.72
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.71
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.71
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.71
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.71
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.71
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.71
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.71
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.71
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.71
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.71
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.71
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.71
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.71
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.71
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.71
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.71
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.7
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.7
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.7
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.7
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.7
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.7
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.7
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.7
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.69
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.69
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.69
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.69
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.69
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.69
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.69
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.69
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.69
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.69
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.69
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.68
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.68
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.68
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.68
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.68
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.68
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.68
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.67
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.67
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.67
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.67
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.67
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.67
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.67
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.66
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.66
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.66
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.66
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.66
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.66
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.66
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.66
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.65
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.65
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.65
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.65
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.64
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.64
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.64
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.64
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.64
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.64
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.64
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.64
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.64
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.64
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.63
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.63
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.63
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.63
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.63
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.63
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.63
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.63
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.63
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.62
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.62
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.62
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.62
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.62
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.61
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.61
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.61
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.61
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.61
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.61
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.61
1he7_A	126	High affinity nerve growth factor receptor; transf	99.6
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.6
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.6
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.59
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.59
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.59
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.58
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.58
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.58
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.58
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.58
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.58
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.57
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.57
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.56
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.56
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.56
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.56
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.56
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.56
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.55
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.55
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.55
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.55
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.54
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.54
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.54
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.54
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.53
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.53
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.53
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.53
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.52
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.52
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.52
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.52
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.52
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.52
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.51
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.51
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.51
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.51
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.51
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.5
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.5
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.49
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.49
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.49
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.49
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.49
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.49
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.49
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.49
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.48
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.48
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.48
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.48
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.47
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.47
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.47
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.47
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.47

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=1.5e-66  Score=588.12  Aligned_cols=508  Identities=23%  Similarity=0.336  Sum_probs=387.2

Q ss_pred             CCCCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeC--CeEEEcCCc
Q psy14896        187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSG--GNLIINDPR  264 (813)
Q Consensus       187 ~~~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~  264 (813)
                      ..||.|+..+.++.+.+|     ++++|.|.+.|.|.|.|+|||||..+..        ....++...+  ++|.|.+. 
T Consensus         3 ~~pP~f~~~~~~~~v~~G-----~~v~L~C~~~g~p~~~v~W~k~g~~l~~--------~~~~~~~~~~~~~~L~I~~v-   68 (570)
T 3b43_A            3 MEPPYFIEPLEHVEAAIG-----EPITLQCKVDGTPEIRIAWYKEHTKLRS--------APAYKMQFKNNVASLVINKV-   68 (570)
T ss_dssp             CCCCEEEECCCCEEECTT-----SCEEEEEEEESSSSCEEEEECSSSBCCC--------CSSEEEECCTTEEEEEESSC-
T ss_pred             CCCCcceEECCceEEcCC-----CEEEEEEEEccCCCCEEEEEECCEEccC--------CCCEEEEEECCEEEEEEccC-
Confidence            357999999999988777     6799999999999999999999987632        1111222222  46777775 


Q ss_pred             cccCCeeEEEEeecCceeeEeeeeEEeeee---ecccccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccC
Q psy14896        265 QVEDRGSYHCKASNKFGSIISESVQLAFGF---IGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEE  341 (813)
Q Consensus       265 ~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~---~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~  341 (813)
                      +.+|+|.|+|.|.|..|... ....|.|..   +|.+..........+|+.++|.|.+ .|.|+++++|+|||+++....
T Consensus        69 ~~~D~G~Y~C~a~N~~g~~~-~~~~l~v~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~-~g~p~~~v~W~k~g~~l~~~~  146 (570)
T 3b43_A           69 DHSDVGEYTCKAENSVGAVA-SSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRI-NGSEPLQVSWYKDGELLKDDA  146 (570)
T ss_dssp             CGGGCEEEEEEEEETTEEEE-EEEEEEECCCCCCCEESSCCCCEEEETTSCEEEEEEE-ESSSSCEEEEEETTEECCCCS
T ss_pred             ChhhCEEEEEEEEeCCceEE-EEEEEEECCCCCCCcccccCCCeEecCCCeEEEEEEE-ccCCCCEEEEEECCEECcCCC
Confidence            89999999999999999873 345555532   3445555666777889999999996 678899999999998753322


Q ss_pred             CccEE-EccCccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEE
Q psy14896        342 DKRVF-VSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLE  420 (813)
Q Consensus       342 ~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~  420 (813)
                      ..... ....++|.|.++..+|+|.|+|.|.|..|....   .+.|.|........+.     .......+.+|+.+.|.
T Consensus       147 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~---~~~l~v~~~~~pp~~~-----~~p~~~~v~~G~~~~l~  218 (570)
T 3b43_A          147 NLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASS---SAKLTLSEHEVPPFFD-----LKPVSVDLALGESGTFK  218 (570)
T ss_dssp             SEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEE---EEEEEEECCCCCCEEE-----ECCCCBCCBSBSCEEEE
T ss_pred             CEEEEEECCEEEEEECcCChHHCEEEEEEEEeCCcEEEE---EEEEEEcCCCCCCccc-----cCCceeEecCCCeEEEE
Confidence            22221 223458999999999999999999998875432   2556654321111110     11123457778888888


Q ss_pred             EEEeecCCCeeeEeecCCcCCCCceeccccceEEEcccccccceEEeCCCceEecccccccccCeEEEEEeeccCCCcEE
Q psy14896        421 CVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYE  500 (813)
Q Consensus       421 C~~~g~p~p~i~W~~~~~~l~~~~~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~  500 (813)
                      |.+.|.|.|.|+|+|++.++.....                                                       
T Consensus       219 C~~~g~p~p~i~W~k~g~~i~~~~~-------------------------------------------------------  243 (570)
T 3b43_A          219 CHVTGTAPIKITWAKDNREIRPGGN-------------------------------------------------------  243 (570)
T ss_dssp             EEEESSSCCEEEEEETTEECCTTSS-------------------------------------------------------
T ss_pred             EEEEECCCCEEEEEECCEECcCCCc-------------------------------------------------------
Confidence            8888887778888887766643211                                                       


Q ss_pred             EeeccccccceeccccCCCCCceEEe--eCCeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEEeecccccccCCC-
Q psy14896        501 WFKEDYVQDRLVANLIDPLSDKRFTL--SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAP-  577 (813)
Q Consensus       501 W~k~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~p~~~~~~~~-  577 (813)
                                           .++..  ..++|.|.++ ..+|+|.|+|.|.|..|.. +..+.|.|..+|.+.....+ 
T Consensus       244 ---------------------~~~~~~~~~~~L~i~~v-~~~D~G~Y~C~a~N~~g~~-~~~~~l~V~~~p~~~~~~~~~  300 (570)
T 3b43_A          244 ---------------------YKMTLVENTATLTVLKV-TKGDAGQYTCYASNVAGKD-SCSAQLGVQEPPRFIKKLEPS  300 (570)
T ss_dssp             ---------------------EEEEEETTEEEEEESSB-CGGGCEEEEEEEEETTEEE-EEEEEECCBCCCEEEECCCSB
T ss_pred             ---------------------EEEEEECCEEEEEEccc-CcccCEEEEEEEECCCCcE-EEEEEEEeecCCcccccCCCc
Confidence                                 11111  1247899996 9999999999999999987 45588889888876654433 


Q ss_pred             ceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEe---eCccEEEEeecccCCeeEEEEEEeeecCccccC
Q psy14896        578 EIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVS---YDGALYFSALEQIDAGNYSCNVQSKVSDTGRNG  654 (813)
Q Consensus       578 ~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  654 (813)
                      ..+.+|+.+.|.|.+ .|.|.+.|+|+|++.++.  ...++.+.   ..+.|.|.+++.+|+|.|+|.|.|..|....  
T Consensus       301 ~~v~~g~~~~l~C~~-~g~P~p~v~W~k~~~~l~--~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~--  375 (570)
T 3b43_A          301 RIVKQDEHTRYECKI-GGSPEIKVLWYKDETEIQ--ESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASS--  375 (570)
T ss_dssp             CCEESSCEEEEEEEE-ESSSSCEEEEEETTEECC--CSSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEE--
T ss_pred             cEEcCCCcEEEEEEE-eeCCCCEEEEeECCEECC--CCCcEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEEE--
Confidence            457789999999999 799999999999998643  33333332   2346999999999999999999999987544  


Q ss_pred             ceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceee----ecceEEEECC
Q psy14896        655 PFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----NFNRILTIPN  730 (813)
Q Consensus       655 ~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~----~~~~~L~i~~  730 (813)
                       .+.|.|..+|.+..        .+....+.+|++++|.|.+.|.|+|.|+|+|+|.+|..+.++.    ....+|.|.+
T Consensus       376 -~~~l~V~~~P~~~~--------~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~  446 (570)
T 3b43_A          376 -STSLKVKEPPVFRK--------KPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILN  446 (570)
T ss_dssp             -EEEECEECCCEECS--------CCCCEEECTTCCEEEEEEEESSSSCCCEEEETTEECCSSSSEEEEEETTEEEEEECS
T ss_pred             -EEEEEecCCCeeec--------CCCceeecCCCEEEEEEEEecCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECC
Confidence             36788888876543        1223567899999999999999999999999999998766442    2235899999


Q ss_pred             CCCCCCEEEEEEEEcCCCceEEEEEEEEEcCCcccccCCceeecCCCeEEEEEEEcccCCceEEEEECCEec-ccccccc
Q psy14896        731 VKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELG-HQMTDLL  809 (813)
Q Consensus       731 v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~g~~l-~~~~~~~  809 (813)
                      ++.+|+|.|+|.|.|.+|..+..+.|.|..||.|...+.+..+.+|+++.|.|.+.|.|+|+|.|+|||.++ ..+.++.
T Consensus       447 v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~P~~~~~~~~~~~~~g~~~~l~c~~~g~p~~~v~W~k~~~~~~~~~~~~~  526 (570)
T 3b43_A          447 VDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIW  526 (570)
T ss_dssp             CCGGGCEEEEEEEECSSCEEEEEEEEEECCCCEEEECCCCBCCBTTCCEEEEEEEESCSSCCCEEEETTEECCCCTTTEE
T ss_pred             CChhhCEEEEEEEEECCCeEEEEEEEEeccCCcccccCCCceecCCCeEEEEEEEecCCCCEEEEEeCCeEeccCCCeEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999998655 4444444


Q ss_pred             c
Q psy14896        810 L  810 (813)
Q Consensus       810 i  810 (813)
                      |
T Consensus       527 ~  527 (570)
T 3b43_A          527 I  527 (570)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=100.00  E-value=2.2e-63  Score=572.81  Aligned_cols=565  Identities=19%  Similarity=0.288  Sum_probs=422.0

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccc--cccccc-------cCCCccEE-eeCCeEEEc
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRL--VANLID-------PLSDKRFT-LSGGNLIIN  261 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~--~~~~~~-------~~~~~~~~-~~~~~l~i~  261 (813)
                      |+.+|..+.+.+|     ++++|.|...+.|.+.|.|||+.......  .....+       +....|.. ..+++|.|.
T Consensus         2 v~~~p~~~~v~~G-----~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~gr~~~~~~~sL~I~   76 (642)
T 1e07_A            2 LTIESTPFNVAEG-----KEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQ   76 (642)
T ss_pred             ceEeccCCccccc-----ccEEEEEccCCCCceEEEEECCcccCCcceEEEEEccccccccCccccCceeeccCCcEEEC
Confidence            4555666777666     77999999876677899999954321100  000000       11122333 347789998


Q ss_pred             CCccccCCeeEEEEeecCceeeEeeeeEEeeeeecc-cccC-CCCceeecCCCeEEEecCCCCCCcceEEEeeccccccc
Q psy14896        262 DPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGE-FNLK-RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFV  339 (813)
Q Consensus       262 ~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~-~~~~-~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~  339 (813)
                      +. +.+|+|.|+|.+.|......+..+.|.|...+. +.+. .....+..|+.++|.|.+. + |.+.+.|+|||.++  
T Consensus        77 ~v-~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~v~~g~~v~l~C~~~-~-p~~~v~W~~~g~~l--  151 (642)
T 1e07_A           77 NI-IQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEPE-T-QDATYLWWVNNQSL--  151 (642)
T ss_pred             CC-CcccCcEEEEEEEcCCCeEEEEEEEEEecccCCCCcEEccCceeEecCCcEEEEEECC-C-CCeeEEEEECCeEC--
Confidence            86 899999999999986432225566777765322 2222 2234567788899999964 4 89999999999874  


Q ss_pred             cCCccEEEcc-CccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEE
Q psy14896        340 EEDKRVFVSY-DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVR  418 (813)
Q Consensus       340 ~~~~~~~~~~-~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~  418 (813)
                      ....++.+.. ++.|.|.+++.+|+|.|+|.|.|..|.  ..+..+.|.|...|....+.+       ....+.+|+.+.
T Consensus       152 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~--~~s~~~~l~V~~~p~~~~~~~-------~~~~~~~G~~~~  222 (642)
T 1e07_A          152 PVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSA--RRSDSVILNVLYGPDAPTISP-------LNTSYRSGENLN  222 (642)
T ss_pred             CCCCceEEcCCCCEEEEeCCCcccCeeEEEEEecCCCC--cccceEEEEEEeCCCCcEEec-------CCcccccCCEEE
Confidence            3445665554 458999999999999999999998875  234557888886554332221       234689999999


Q ss_pred             EEEEEeecCCCeeeEeecCCcCCCCceeccccceEEEcccc--cccceEEeCCCce---------Eecc-----------
Q psy14896        419 LECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVK--MRGPYFIKQPTDV---------VFDL-----------  476 (813)
Q Consensus       419 l~C~~~g~p~p~i~W~~~~~~l~~~~~~~~~~~~l~i~~~~--~~g~y~~~~~~~~---------~~~~-----------  476 (813)
                      |.|.+.|+|.|.+.|+++|..+..       ...|.|.++.  ++|.|+|.+.+..         .+..           
T Consensus       223 l~C~~~g~p~~~i~W~~~g~~i~~-------~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~  295 (642)
T 1e07_A          223 LSCHAASNPPAQYSWFVNGTFQQS-------TQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITS  295 (642)
T ss_pred             EEEEcCCCCCcEEEEEECCeEccc-------CCceEEecccccCCeEEEEEEEeCCCceEEeeeEEEEEEccCCCCEEEc
Confidence            999999999999999999988853       3457777664  5899999875421         1100           


Q ss_pred             ---cccccccCeEEEEEeeccCCCcEEEeeccccccceeccccCCCCCceEE--eeCCeEEEeCCCCCCCCceEEEEEEc
Q psy14896        477 ---SKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFT--LSGGNLIINDPRQVEDRGSYHCKASN  551 (813)
Q Consensus       477 ---~~~~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~~d~G~Y~C~a~n  551 (813)
                         .....|+.+.|.|.+.|.| +.+.|+|+|+.+.          ...++.  ..+++|.|.++ ..+|+|.|+|.|.|
T Consensus       296 ~~~~~~~~g~~v~l~C~~~~~p-~~v~W~~~g~~l~----------~~~~~~~~~~~~~L~i~~~-~~~d~G~Y~C~a~n  363 (642)
T 1e07_A          296 NNSNPVEDEDAVALTCEPEIQN-TTYLWWVNNQSLP----------VSPRLQLSNDNRTLTLLSV-TRNDVGPYECGIQN  363 (642)
T ss_pred             CCceeEecCCcEEEEEECCCCC-ccEEEEECCccCC----------CcCCEEEeCCCCEEEEecc-CcccCeeEEEEEeC
Confidence               0112367799999999987 7999999996542          122333  24578999997 89999999999999


Q ss_pred             CceeEEeecEEEEEeecccc-cccCCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCccEEEEe
Q psy14896        552 KFGSIISESVQLAFGFIGEF-NLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSA  630 (813)
Q Consensus       552 ~~g~~~s~~~~l~v~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~  630 (813)
                      ..|...+..+.|.|..+|.. ...+....+..|+.++|.|.+ .|.|.+.|+|+|+|.++.          .+..|.|.+
T Consensus       364 ~~g~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~i~W~~~g~~~~----------~~~~L~i~~  432 (642)
T 1e07_A          364 ELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHA-ASNPPAQYSWLIDGNIQQ----------HTQELFISN  432 (642)
T ss_pred             CCCCcceeeEEEEEEcCCCCCeecCCceEecCCCcEEEEEEc-CccCCCeEEEEECCEEcC----------CCceEEEcc
Confidence            99987677788888877653 344455677889999999999 799999999999986521          235699999


Q ss_pred             ecccCCeeEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCC
Q psy14896        631 LEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRG  710 (813)
Q Consensus       631 ~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g  710 (813)
                      +..+|+|.|+|.|.|..|..... ..+.+.|..++....+.      ......+.+|++++|.|.+.+ |.+.++|+|+|
T Consensus       433 ~~~~d~G~Y~C~a~n~~g~~~~s-~~~~v~v~~~~~~p~i~------~~~~~~v~~g~~v~l~C~~~~-~~~~i~W~~~g  504 (642)
T 1e07_A          433 ITEKNSGLYTCQANNSASGHSRT-TVKTITVSAELPKPSIS------SNNSKPVEDKDAVAFTCEPEA-QNTTYLWWVNG  504 (642)
T ss_pred             CChhhCeEEEEEEEcCCCCCccc-ceEEEEEeccCCCceEe------cCCceeecCCCeEEEEEECCC-CCcEEEEEECC
Confidence            99999999999999999865432 33556665533222221      122356789999999999995 88999999999


Q ss_pred             cccCCCceee--ecceEEEECCCCCCCCEEEEEEEEcCCCceE-EEEEEEEEcCCc-ccccCCceeecCCCeEEEEEEEc
Q psy14896        711 SPLPRNAYFE--NFNRILTIPNVKVEDQGEYICRASNDRSALE-SSVTISIQAEPN-FTIPLTDKHMDNQADLTWTCEAF  786 (813)
Q Consensus       711 ~~l~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~-~~~~l~V~~~P~-~~~~~~~~~~~~g~~~~l~C~~~  786 (813)
                      .++..+.++.  ..+++|+|.+++.+|+|.|+|.|.|..|... ..+.|.|..+|. +...+.+..+.+|++++|.|.+.
T Consensus       505 ~~l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~  584 (642)
T 1e07_A          505 QSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSA  584 (642)
T ss_pred             EeCCCCCcEEEcCCCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCCCcceecCCceeEEcCCcEEEEEEec
Confidence            9998766543  3357899999999999999999999999864 479999997665 55667788899999999999999


Q ss_pred             ccCCceEEEEECCEecccccccccccC
Q psy14896        787 GVPDVTYSWFRNGELGHQMTDLLLKAV  813 (813)
Q Consensus       787 g~p~~~v~W~k~g~~l~~~~~~~i~~~  813 (813)
                      |.|+|.|+|+|||++|..+..+.|.++
T Consensus       585 g~p~p~v~W~~~g~~i~~~~~L~i~~~  611 (642)
T 1e07_A          585 SNPSPQYSWRINGIPQQHTQVLFIAKI  611 (642)
T ss_pred             cCCCCeEEEEECCEECccCceEEECcc
Confidence            999999999999999998888877653

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=100.00  E-value=1.2e-62  Score=582.91  Aligned_cols=574  Identities=21%  Similarity=0.344  Sum_probs=433.6

Q ss_pred             CCCCceeeCCCce-eecCCCccccccEEEEeeeccCCCCeEEEee-cccccccccccccccCCCccEEeeCCeEEEcCCc
Q psy14896        187 PRGPYFIKQPTDV-VFDLSKRSILNDITLSCYAGGYPNPSYEWFK-EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPR  264 (813)
Q Consensus       187 ~~~P~~~~~p~~~-~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k-~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~  264 (813)
                      ..+|.|+.+|.+. .+..|     +.++|.|++.|.|.|+|+|+| ||..+.        .....+....+|+|.|.+. 
T Consensus        36 ~~~P~~~~~p~~~~~~~~g-----~~~~l~C~a~g~p~p~~~W~k~~g~~~~--------~~~~~~~~~~~g~l~i~~~-  101 (816)
T 3dmk_A           36 QKGPVFLKEPTNRIDFSNS-----TGAEIECKASGNPMPEIIWIRSDGTAVG--------DVPGLRQISSDGKLVFPPF-  101 (816)
T ss_dssp             CEEEEEEECCCSEEEEETT-----TCEEEECEEEEESCCEEEEEETTSCBCC--------CBTTTBEECSTTEEEECCC-
T ss_pred             cCCCcEEeCCCCeEEEECC-----CCeEEEeeecCCCCCEEEEEeCCCCCcc--------CCCceEEEeeCCcEEEcCC-
Confidence            3468999999874 46666     669999999999999999999 787652        1223345567899999875 


Q ss_pred             cccC------CeeEEEEeecCceeeEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCc--ceEEEeecccc
Q psy14896        265 QVED------RGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPG--VNYYWARDYFP  336 (813)
Q Consensus       265 ~~~d------~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~--~~v~W~k~~~~  336 (813)
                      +.+|      +|.|+|.|+|..|.+.|..+.|.+...+.+.....+..+.+|+.++|.|.+..+.|.  +.+.|++++..
T Consensus       102 ~~~~~~~~~d~G~Y~C~a~n~~G~~~S~~~~v~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~  181 (816)
T 3dmk_A          102 RAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEE  181 (816)
T ss_dssp             CGGGCCHHHHEEEEEEEEEETTEEEEEEEEEEEEECCCCCCCBCCCEEEETTSCEEECCBCCHHHHTTEEEEEEEETTSC
T ss_pred             ChHHccccccceEEEEEEecCcceEEccceEEEEEEccccEEEEecceEecCceEEEEECCCccccccEEEEEEEecCce
Confidence            5665      999999999999998888899888777777777778889999999999997544443  79999999876


Q ss_pred             cccc---CCccEEEccCccEEEeeeeecCC-eeeEEEEeeeccccCC-CCCceeeEEccCCcccccccCCCCCC--CCCc
Q psy14896        337 NFVE---EDKRVFVSYDGALYFSALEQIDA-GNYSCNVQSKVSDTGR-NGPFFPLKVFPHSNFQQLKFPNNFPK--TFPE  409 (813)
Q Consensus       337 ~~~~---~~~~~~~~~~~~L~i~~v~~~D~-G~Y~C~a~n~~g~~~~-~s~~~~l~v~~~~~~~~~~~~~~~~~--~~~~  409 (813)
                      +...   .+.|+.+..+|+|.|.+++.+|+ |.|+|.+.|..+.... ......|.|..+...   ..|.....  ....
T Consensus       182 ~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~g~Y~C~~~~~~~~~~~~s~~~~~l~v~~~~~~---~~P~i~~~~~~~~~  258 (816)
T 3dmk_A          182 NYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISS---AVPKVVSLAKFDMK  258 (816)
T ss_dssp             EECBSSCBTTTEEECTTSCEEESSCCGGGSSCEEEEEEEETTTCCEEECSBCEEEEEECCCSC---CCCBCCGGGGEEEE
T ss_pred             EeccccCCCceEEEecCceEEEecCChhhccceeEEEEeeeeeeeeeecccccceEEeCCCCC---CCCccccccCccce
Confidence            4322   46788999999999999999999 9999999986543222 222345666543211   11111110  1234


Q ss_pred             CCCCCCcEEEEEEEeecCCCeeeEeecCCcCCC------CceeccccceEEEccccc-----------------------
Q psy14896        410 APKAGDKVRLECVAFGYPVPSYNWTRRGSPLPR------NAYFENFNRILTIPNVKM-----------------------  460 (813)
Q Consensus       410 ~v~~g~~~~l~C~~~g~p~p~i~W~~~~~~l~~------~~~~~~~~~~l~i~~~~~-----------------------  460 (813)
                      .+.+|+.+.|.|.+.|.|.|.+.|+|++.....      ..+.......|.|.++..                       
T Consensus       259 ~v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l  338 (816)
T 3dmk_A          259 TYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVL  338 (816)
T ss_dssp             EECTTSCEEECCCCBCSSCCEEEEEEECTTSSCEEECCCSSSEEEETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred             EEeCCCeEEEEEEeeecCCCeEEEEeCCCCCccCcceecCCceEeccceEEECCCCHhHCEEEEEEEEcCCCceEEEEEE
Confidence            678999999999999999999999996543221      112222233444444332                       


Q ss_pred             --------------------------------------------------------------ccceEEeCCCce------
Q psy14896        461 --------------------------------------------------------------RGPYFIKQPTDV------  472 (813)
Q Consensus       461 --------------------------------------------------------------~g~y~~~~~~~~------  472 (813)
                                                                                    +|.|+|.+.+..      
T Consensus       339 ~V~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~  418 (816)
T 3dmk_A          339 TVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRESAEAS  418 (816)
T ss_dssp             EECEEEEEEEESSEEECCTTSCEEEEEEEEEECCCEEEEEETTEECSCCSSEEEESSCCGGGCEEEEEEEECSSCEEEEC
T ss_pred             EEcCCCceeeCCCceEecCCCCEEEEEEEeccCCCEEEEEECCEECCCCCCEEEEcCCCHHHCEEEEEEEECCCCcEEEE
Confidence                                                                          455666432210      


Q ss_pred             ---Ee-----------c--ccccccccCeEEEEEeeccCCCcEEEeeccccccceeccccCCCCCceEEe-----eC---
Q psy14896        473 ---VF-----------D--LSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL-----SG---  528 (813)
Q Consensus       473 ---~~-----------~--~~~~~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~-----~~---  528 (813)
                         .+           .  ......|+.+.|.|.+.|.|.|.+.|+++|..+..          ..++..     .+   
T Consensus       419 ~~l~v~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~----------~~~~~~~~~~~~~~~~  488 (816)
T 3dmk_A          419 AELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIAN----------NDRYQVGQYVTVNGDV  488 (816)
T ss_dssp             CEEECCCSSCCCEEEEECCCEEECSSSCEEEEEEEECSSCCEEEEEETTEECCS----------CTTEEEEEEECTTSCE
T ss_pred             EEEEEccccCCCceEecCcceEEcCCCCEEEEEEEecCCCCEEEEEECCEECCC----------CCCcccccEEecCCCc
Confidence               00           0  01225689999999999999999999999965421          111211     12   


Q ss_pred             -CeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEEeecccccccCCCceeccCCCceEEeCCCCCCCccEEEEccCC
Q psy14896        529 -GNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDY  607 (813)
Q Consensus       529 -~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~  607 (813)
                       ..|.|.++ ..+|+|.|+|.|.|..|.. ...+.|.|..+|.+. ......+..|+.++|.|.+ .+.|.+.|.|+|++
T Consensus       489 ~~~L~i~~v-~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~~-~~~~~~v~~G~~v~l~C~~-~g~p~~~i~W~k~~  564 (816)
T 3dmk_A          489 VSYLNITSV-HANDGGLYKCIAKSKVGVA-EHSAKLNVYGLPYIR-QMEKKAIVAGETLIVTCPV-AGYPIDSIVWERDN  564 (816)
T ss_dssp             EEEEEESSC-CTTTCEEEEEEEEETTEEE-EEEEEEEECSSCEEC-CCCCEEEETTCCEEEECCE-ECSSEEEEEEEETT
T ss_pred             EEEEEEeec-cccCCEEEEEEEEECCCeE-EEEEEEEEecCCeeE-ccCCeEEecCCeEEEEEEe-cCCCCCEEEEEECC
Confidence             26999997 9999999999999999986 445788887776443 3344567889999999999 78999999999999


Q ss_pred             CCCcccCCCeEEEeeCccEEEEeec-ccCCeeEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCC
Q psy14896        608 FPNFVEEDKRVFVSYDGALYFSALE-QIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA  686 (813)
Q Consensus       608 ~~~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~  686 (813)
                      .+  +....+..+..+++|.|.++. .+|+|.|+|.|.|..|...  ...+.+.|..+|.+....       .....+.+
T Consensus       565 ~~--l~~~~~~~~~~~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~~--~~~~~v~v~~~p~~~~~~-------~~~~~~~~  633 (816)
T 3dmk_A          565 RA--LPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSA--RGSLEVQVMVLPRIIPFA-------FEEGPAQV  633 (816)
T ss_dssp             EE--SCCSTTEEECTTSEEEESSCCHHHHCEEEEEEEEESSSCEE--EEEEEEEEECCCCCBCCC-------CCSSCEES
T ss_pred             eE--cccCCceEEecCCeEEEEecCccccCEEEEEEEEECCCcee--eeeEEEEEecCCcccccc-------ccccccCC
Confidence            76  344556677788999999998 6999999999999988543  234677777777654321       12255789


Q ss_pred             CCeEEEEEEecCCCCC-eEEEEeCCcccCCCcee-----eecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEc
Q psy14896        687 GDKVRLECVAFGYPVP-SYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQA  760 (813)
Q Consensus       687 G~~v~l~C~~~g~P~p-~i~W~k~g~~l~~~~~~-----~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  760 (813)
                      |+.++|.|.+.+.|+| .|+|+|+|..+..+..+     ....+.|+|.+++.+|+|.|+|.|.|..|..+.++.|.|..
T Consensus       634 G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  713 (816)
T 3dmk_A          634 GQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYV  713 (816)
T ss_dssp             SCEEEEEEBCCCSSSCCEEEEEETTBCCCGGGTCEEEEETTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEEE
T ss_pred             CCeEEEEEEEeCCCCCCEEEEEECCeEcCCCCCeeEEEcCCCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEEe
Confidence            9999999999876655 99999999998655422     12356899999999999999999999999999999999999


Q ss_pred             CCcccccCCceeecCCCeEEEEEEEcccCCceEEEEECCEec
Q psy14896        761 EPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELG  802 (813)
Q Consensus       761 ~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~g~~l  802 (813)
                      ||.|...+.+..+.+|++++|.|.+.|.|+|.|+|+|+|..+
T Consensus       714 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~~~~~  755 (816)
T 3dmk_A          714 PPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDT  755 (816)
T ss_dssp             EEEEEECCCCEEEETTCCEEEECEEEEESCCEEECCEECSSS
T ss_pred             CCceeeecccceecCCCcEEEEEEEecCCCCeEEEEecCCCC
Confidence            999998888899999999999999999999999999988654

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=1.1e-62  Score=556.37  Aligned_cols=501  Identities=19%  Similarity=0.271  Sum_probs=381.3

Q ss_pred             EEEeeccccccceeeccCCCceeeeeeecccccceEeeccccceeeeeeeCCCCCCCCCceeeCCCceeecCCCcccccc
Q psy14896        132 AYSFSQSLKRWGFERVTGMEPLLFICEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILND  211 (813)
Q Consensus       132 ~~~~~~~~~~l~i~~~~~~d~~~y~C~~~~~~~~~~~~~~~~~~~~l~v~~p~~~~~~P~~~~~p~~~~v~~g~~~~g~~  211 (813)
                      .+....+...|.|.++..+|.|.|.|.+.+..    +  .......|.|..+   ..+|.|...+.+..+.+|     ++
T Consensus        53 ~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~----g--~~~~~~~l~v~~~---~~~p~~~~~~~~~~~~~G-----~~  118 (570)
T 3b43_A           53 KMQFKNNVASLVINKVDHSDVGEYTCKAENSV----G--AVASSAVLVIKER---KLPPSFARKLKDVHETLG-----FP  118 (570)
T ss_dssp             EEECCTTEEEEEESSCCGGGCEEEEEEEEETT----E--EEEEEEEEEECCC---CCCCEESSCCCCEEEETT-----SC
T ss_pred             EEEEECCEEEEEEccCChhhCEEEEEEEEeCC----c--eEEEEEEEEECCC---CCCCcccccCCCeEecCC-----Ce
Confidence            34444444579999999999999999997644    2  2233344555433   236888888888887776     67


Q ss_pred             EEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe--eCCeEEEcCCccccCCeeEEEEeecCceeeEeeeeE
Q psy14896        212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL--SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQ  289 (813)
Q Consensus       212 v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~  289 (813)
                      +.|.|.+.|.|.|.|+|||||..+...        .......  ..++|.|.+. +.+|+|.|+|.|.|..|.. +..+.
T Consensus       119 v~l~C~~~g~p~~~v~W~k~g~~l~~~--------~~~~~~~~~~~~~L~i~~~-~~~d~G~Y~C~a~n~~g~~-~~~~~  188 (570)
T 3b43_A          119 VAFECRINGSEPLQVSWYKDGELLKDD--------ANLQTSFIHNVATLQILQT-DQSHVGQYNCSASNPLGTA-SSSAK  188 (570)
T ss_dssp             EEEEEEEESSSSCEEEEEETTEECCCC--------SSEEEEEETTEEEEEESSC-CGGGCEEEEEEEEETTEEE-EEEEE
T ss_pred             EEEEEEEccCCCCEEEEEECCEECcCC--------CCEEEEEECCEEEEEECcC-ChHHCEEEEEEEEeCCcEE-EEEEE
Confidence            999999999999999999999876321        1111111  2356888875 8999999999999999987 45566


Q ss_pred             Eeeee---ecccccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCccEEEcc-CccEEEeeeeecCCee
Q psy14896        290 LAFGF---IGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSY-DGALYFSALEQIDAGN  365 (813)
Q Consensus       290 l~v~~---~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~-~~~L~i~~v~~~D~G~  365 (813)
                      |.|..   +|.+...+....+.+|+.++|.|.+ .|.|.++++|+|||.++......++.... .++|.|.+++.+|+|.
T Consensus       189 l~v~~~~~pp~~~~~p~~~~v~~G~~~~l~C~~-~g~p~p~i~W~k~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~  267 (570)
T 3b43_A          189 LTLSEHEVPPFFDLKPVSVDLALGESGTFKCHV-TGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQ  267 (570)
T ss_dssp             EEEECCCCCCEEEECCCCBCCBSBSCEEEEEEE-ESSSCCEEEEEETTEECCTTSSEEEEEETTEEEEEESSBCGGGCEE
T ss_pred             EEEcCCCCCCccccCCceeEecCCCeEEEEEEE-EECCCCEEEEEECCEECcCCCcEEEEEECCEEEEEEcccCcccCEE
Confidence            66543   3344455666778889999999996 67899999999999886443333343333 3589999999999999


Q ss_pred             eEEEEeeeccccCCCCCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEEEEeecCCCeeeEeecCCcCCCCce
Q psy14896        366 YSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAY  445 (813)
Q Consensus       366 Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~~~~l~~~~~  445 (813)
                      |+|.|.|..|...   ..+.|.|..+|.+.....+       ...+.+|+.+.|.|.+.|+|.|.+.|+|++.++.....
T Consensus       268 Y~C~a~N~~g~~~---~~~~l~V~~~p~~~~~~~~-------~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~~  337 (570)
T 3b43_A          268 YTCYASNVAGKDS---CSAQLGVQEPPRFIKKLEP-------SRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSK  337 (570)
T ss_dssp             EEEEEEETTEEEE---EEEEECCBCCCEEEECCCS-------BCCEESSCEEEEEEEEESSSSCEEEEEETTEECCCSSS
T ss_pred             EEEEEECCCCcEE---EEEEEEeecCCcccccCCC-------ccEEcCCCcEEEEEEEeeCCCCEEEEeECCEECCCCCc
Confidence            9999999887643   3477888776654322111       13467888899999888888888888888877643211


Q ss_pred             eccccceEEEcccccccceEEeCCCceEecccccccccCeEEEEEeeccCCCcEEEeeccccccceeccccCCCCCceEE
Q psy14896        446 FENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFT  525 (813)
Q Consensus       446 ~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~  525 (813)
                      +                                                                            +..
T Consensus       338 ~----------------------------------------------------------------------------~~~  341 (570)
T 3b43_A          338 F----------------------------------------------------------------------------RMS  341 (570)
T ss_dssp             E----------------------------------------------------------------------------EEE
T ss_pred             E----------------------------------------------------------------------------EEE
Confidence            1                                                                            111


Q ss_pred             e--eCCeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEEeecccccccCCCceeccCCCceEEeCCCCCCCccEEEE
Q psy14896        526 L--SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYW  603 (813)
Q Consensus       526 ~--~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W  603 (813)
                      .  ..+.|.|.++ ..+|+|.|+|.|.|..|... ..+.|.|..+|.+...+.+..+.+|+.++|.|.+ .|.|.+.|+|
T Consensus       342 ~~~~~~~L~i~~v-~~~D~G~Y~C~a~N~~g~~~-~~~~l~V~~~P~~~~~~~~~~~~~G~~v~l~C~~-~g~P~p~v~W  418 (570)
T 3b43_A          342 FVESVAVLEMYNL-SVEDSGDYTCEAHNAAGSAS-SSTSLKVKEPPVFRKKPHPVETLKGADVHLECEL-QGTPPFQVSW  418 (570)
T ss_dssp             EETTEEEEEEESC-CGGGCEEEEEEEEBTTBCCE-EEEEECEECCCEECSCCCCEEECTTCCEEEEEEE-ESSSSCCCEE
T ss_pred             EECCEEEEEECCC-CcccCEEEEEEEEeCCCEEE-EEEEEEecCCCeeecCCCceeecCCCEEEEEEEE-ecCCCCEEEE
Confidence            1  1246899997 99999999999999999874 4478999999988777777778899999999999 7999999999


Q ss_pred             ccCCCCCcccCCCeEEEeeC---ccEEEEeecccCCeeEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCC
Q psy14896        604 ARDYFPNFVEEDKRVFVSYD---GALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTF  680 (813)
Q Consensus       604 ~k~~~~~~~~~~~~~~~~~~---~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~  680 (813)
                      +|+|.++  ..+.++.+..+   ++|.|.++..+|+|.|+|.|.|..|....   .+.|.|..+|.+..        .+.
T Consensus       419 ~k~g~~l--~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~---~~~l~v~~~P~~~~--------~~~  485 (570)
T 3b43_A          419 HKDKREL--RSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTC---VGSITLKAPPRFVK--------KLS  485 (570)
T ss_dssp             EETTEEC--CSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEE---EEEEEECCCCEEEE--------CCC
T ss_pred             EECCEEC--cCCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeEEE---EEEEEeccCCcccc--------cCC
Confidence            9999763  34455555444   36999999999999999999999987543   47788888886653        223


Q ss_pred             CcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccC-CCcee----eecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEE
Q psy14896        681 PEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLP-RNAYF----ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVT  755 (813)
Q Consensus       681 ~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~-~~~~~----~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~  755 (813)
                      ...+.+|+.++|.|.+.|.|+|.|+|+|+|..+. .+.++    ....++|.|.+++.+|+|.|+|.|.|.+|.+++++.
T Consensus       486 ~~~~~~g~~~~l~c~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~a~  565 (570)
T 3b43_A          486 DISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFAT  565 (570)
T ss_dssp             CBCCBTTCCEEEEEEEESCSSCCCEEEETTEECCCCTTTEEECCCSSEEEEEESSCCTTCCEEEEEEEECSSCEEEEEEE
T ss_pred             CceecCCCeEEEEEEEecCCCCEEEEEeCCeEeccCCCeEEEEECCCEEEEEECcCCHHHCEEEEEEEEECCcEEEEEEE
Confidence            3678899999999999999999999999986553 33322    233568999999999999999999999999999999


Q ss_pred             EEEE
Q psy14896        756 ISIQ  759 (813)
Q Consensus       756 l~V~  759 (813)
                      |.|.
T Consensus       566 L~V~  569 (570)
T 3b43_A          566 LSVL  569 (570)
T ss_dssp             ECCB
T ss_pred             EEEe
Confidence            9885

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=100.00  E-value=1.2e-60  Score=550.13  Aligned_cols=537  Identities=18%  Similarity=0.290  Sum_probs=405.3

Q ss_pred             ccceeeccCCCceeeeeeecccccceEeeccccceeeeeeeCCCCCCCCCceeeCCCceeecCCCccccccEEEEeeecc
Q psy14896        141 RWGFERVTGMEPLLFICEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGG  220 (813)
Q Consensus       141 ~l~i~~~~~~d~~~y~C~~~~~~~~~~~~~~~~~~~~l~v~~p~~~~~~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g  220 (813)
                      .|.|.+++..|.|.|.|.+.+...     +.....+.|.|..++   .+|.|...+ ...+.+|     +.+.|.|.+.|
T Consensus        72 sL~I~~v~~~D~G~Y~C~~~~~~~-----~~~~~~~~l~V~~~~---~~p~i~~~~-~~~v~~g-----~~v~l~C~~~~  137 (642)
T 1e07_A           72 SLLIQNIIQNDTGFYTLHVIKSDL-----VNEEATGQFRVYPEL---PKPSISSNN-SKPVEDK-----DAVAFTCEPET  137 (642)
T ss_pred             cEEECCCCcccCcEEEEEEEcCCC-----eEEEEEEEEEecccC---CCCcEEccC-ceeEecC-----CcEEEEEECCC
Confidence            799999999999999999965321     112344557776543   246665543 3444444     77999999999


Q ss_pred             CCCCeEEEeecccccccccccccccCCCccEEe--eCCeEEEcCCccccCCeeEEEEeecCceeeEeeeeEEeeeeecc-
Q psy14896        221 YPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL--SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGE-  297 (813)
Q Consensus       221 ~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~-  297 (813)
                       |.+.|+|||+|..+.          .+.++.+  .+++|.|.+. +.+|+|.|+|.|.|..|...+..+.|.|.+.|. 
T Consensus       138 -p~~~v~W~~~g~~l~----------~~~~~~~~~~~~~L~i~~~-~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~~  205 (642)
T 1e07_A          138 -QDATYLWWVNNQSLP----------VSPRLQLSNGNRTLTLFNV-TRNDTASYKCETQNPVSARRSDSVILNVLYGPDA  205 (642)
T ss_pred             -CCeeEEEEECCeECC----------CCCceEEcCCCCEEEEeCC-CcccCeeEEEEEecCCCCcccceEEEEEEeCCCC
Confidence             999999999998762          2233333  3567888875 899999999999999887667788999887655 


Q ss_pred             cccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCccEEEccCccEEEeeeeecCCeeeEEEEeeecccc
Q psy14896        298 FNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDT  377 (813)
Q Consensus       298 ~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~  377 (813)
                      +.+.+....+.+|+.++|.|.+ .|+|.++++|+|||.++          ..++.|.|.+++.+|+|.|+|.|.|..|..
T Consensus       206 ~~~~~~~~~~~~G~~~~l~C~~-~g~p~~~i~W~~~g~~i----------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  274 (642)
T 1e07_A          206 PTISPLNTSYRSGENLNLSCHA-ASNPPAQYSWFVNGTFQ----------QSTQELFIPNITVNNSGSYTCQAHNSDTGL  274 (642)
T ss_pred             cEEecCCcccccCCEEEEEEEc-CCCCCcEEEEEECCeEc----------ccCCceEEecccccCCeEEEEEEEeCCCce
Confidence            3444556678899999999997 88999999999999864          234679999999999999999999988753


Q ss_pred             CCCCCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEEEEeecCCCeeeEeecCCcCCCCceec--cccceEEE
Q psy14896        378 GRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE--NFNRILTI  455 (813)
Q Consensus       378 ~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~~~~l~~~~~~~--~~~~~l~i  455 (813)
                      .. +..+.|.|..++....+..+      ....+..|+.+.|.|.+.+.| +.+.|++++..+....++.  ..+..|.|
T Consensus       275 ~~-s~~~~v~v~~~~~~p~i~~~------~~~~~~~g~~v~l~C~~~~~p-~~v~W~~~g~~l~~~~~~~~~~~~~~L~i  346 (642)
T 1e07_A          275 NR-TTVTTITVYAEPPKPFITSN------NSNPVEDEDAVALTCEPEIQN-TTYLWWVNNQSLPVSPRLQLSNDNRTLTL  346 (642)
T ss_pred             EE-eeeEEEEEEccCCCCEEEcC------CceeEecCCcEEEEEECCCCC-ccEEEEECCccCCCcCCEEEeCCCCEEEE
Confidence            32 33456777654332222211      123456688899999999987 7999999999987655443  34577888


Q ss_pred             cccc--cccceEEeCCCce--------Eec----c---------cccccccCeEEEEEeeccCCCcEEEeecccccccee
Q psy14896        456 PNVK--MRGPYFIKQPTDV--------VFD----L---------SKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLV  512 (813)
Q Consensus       456 ~~~~--~~g~y~~~~~~~~--------~~~----~---------~~~~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~  512 (813)
                      .++.  ++|.|+|.+.+..        .+.    +         .....|+.++|.|.+.|.|.+.|+|+|+|..+.   
T Consensus       347 ~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~---  423 (642)
T 1e07_A          347 LSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQ---  423 (642)
T ss_pred             eccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCCCCCeecCCceEecCCCcEEEEEEcCccCCCeEEEEECCEEcC---
Confidence            8775  4899999875432        111    0         122578999999999999999999999996531   


Q ss_pred             ccccCCCCCceEEeeCCeEEEeCCCCCCCCceEEEEEEcCceeEEee-cEEEEEeecc--cccccCCCceeccCCCceEE
Q psy14896        513 ANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE-SVQLAFGFIG--EFNLKRAPEIGNQNWGKAMF  589 (813)
Q Consensus       513 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~-~~~l~v~~~p--~~~~~~~~~~~~~g~~~~l~  589 (813)
                                    .+..|.|.++ ..+|+|.|+|.|.|..|..... .+.+.|..++  ..........+.+|+.++|.
T Consensus       424 --------------~~~~L~i~~~-~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~~v~~g~~v~l~  488 (642)
T 1e07_A          424 --------------HTQELFISNI-TEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFT  488 (642)
T ss_pred             --------------CCceEEEccC-ChhhCeEEEEEEEcCCCCCcccceEEEEEeccCCCceEecCCceeecCCCeEEEE
Confidence                          2357999997 9999999999999998865332 3455554322  11122334556789999999


Q ss_pred             eCCCCCCCccEEEEccCCCCCcccCCCeEEEee-CccEEEEeecccCCeeEEEEEEeeecCccccCceeeEEEccCCCcc
Q psy14896        590 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSY-DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQ  668 (813)
Q Consensus       590 C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~-~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~  668 (813)
                      |.+.  .|.+.++|+|+|.+  +....++.+.. +++|.|.++..+|+|.|+|.|.|..|...+  ..+.|.|..+|...
T Consensus       489 C~~~--~~~~~i~W~~~g~~--l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s--~~~~l~V~~~p~~~  562 (642)
T 1e07_A          489 CEPE--AQNTTYLWWVNGQS--LPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRS--DPVTLDVLYGPDTP  562 (642)
T ss_pred             EECC--CCCcEEEEEECCEe--CCCCCcEEEcCCCcEEEEeecChhcCceEEEEeEcCCCCccC--CCEEEEEEeCCCcc
Confidence            9994  48899999999986  34445666554 457999999999999999999999986433  24678888766543


Q ss_pred             ccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCC
Q psy14896        669 QLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRS  748 (813)
Q Consensus       669 ~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G  748 (813)
                      .+       .+....+.+|+.++|.|.+.|.|+|.|+|+|||.+|..       ...|.|.+++.+|+|.|+|.|.|.+|
T Consensus       563 ~~-------~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~i~~-------~~~L~i~~~~~~d~G~Y~C~a~N~~G  628 (642)
T 1e07_A          563 II-------SPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQH-------TQVLFIAKITPNNNGTYACFVSNLAT  628 (642)
T ss_pred             ee-------cCCceeEEcCCcEEEEEEeccCCCCeEEEEECCEECcc-------CceEEECcccccCCeEEEEEEEeccc
Confidence            32       12236788999999999999999999999999998864       35899999999999999999999999


Q ss_pred             ceEEEEEEEEEc
Q psy14896        749 ALESSVTISIQA  760 (813)
Q Consensus       749 ~~~~~~~l~V~~  760 (813)
                      .++.++.|.|..
T Consensus       629 ~~~~s~~l~V~v  640 (642)
T 1e07_A          629 GRNNSIVKSITV  640 (642)
T ss_pred             CcceeEEEEEEE
Confidence            999999888864

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=100.00  E-value=1.3e-59  Score=556.87  Aligned_cols=569  Identities=21%  Similarity=0.286  Sum_probs=418.6

Q ss_pred             ccceeeccCCCc-eeeeeeecccccceEeeccccceeeeeeeCCCCCCCCCceeeCC--CceeecCCCccccccEEEEee
Q psy14896        141 RWGFERVTGMEP-LLFICEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQP--TDVVFDLSKRSILNDITLSCY  217 (813)
Q Consensus       141 ~l~i~~~~~~d~-~~y~C~~~~~~~~~~~~~~~~~~~~l~v~~p~~~~~~P~~~~~p--~~~~v~~g~~~~g~~v~l~C~  217 (813)
                      .|.|.++..+|. |.|.|.+.+........  ......|.|..|.. ..+|.|...+  ....+.+|     ++++|.|.
T Consensus       200 ~L~I~~v~~~D~~g~Y~C~~~~~~~~~~~~--s~~~~~l~v~~~~~-~~~P~i~~~~~~~~~~v~~g-----~~v~L~C~  271 (816)
T 3dmk_A          200 ELHIREVGPEDGYKSYQCRTKHRLTGETRL--SATKGRLVITEPIS-SAVPKVVSLAKFDMKTYSGS-----STMALLCP  271 (816)
T ss_dssp             CEEESSCCGGGSSCEEEEEEEETTTCCEEE--CSBCEEEEEECCCS-CCCCBCCGGGGEEEEEECTT-----SCEEECCC
T ss_pred             eEEEecCChhhccceeEEEEeeeeeeeeee--cccccceEEeCCCC-CCCCccccccCccceEEeCC-----CeEEEEEE
Confidence            689999999998 99999996533221111  11223455555432 2356665443  34555555     77999999


Q ss_pred             eccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeeeeEEeeeeecc
Q psy14896        218 AGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGE  297 (813)
Q Consensus       218 ~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~  297 (813)
                      +.|.|.|.|.|||++.......    ......+....+++|.|.+. +.+|+|.|+|.|.|..|.. +..+.|.|..++.
T Consensus       272 ~~g~p~p~v~W~k~~~~~~~~~----~~~~~~~~~~~~~~L~i~~v-~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~  345 (816)
T 3dmk_A          272 AQGYPVPVFRWYKFIEGTTRKQ----AVVLNDRVKQVSGTLIIKDA-VVEDSGKYLCVVNNSVGGE-SVETVLTVTAPLS  345 (816)
T ss_dssp             CBCSSCCEEEEEEECTTSSCEE----ECCCSSSEEEETTEEEECSC-CGGGCEEEEEEEECSSCEE-EEEEEEEECEEEE
T ss_pred             eeecCCCeEEEEeCCCCCccCc----ceecCCceEeccceEEECCC-CHhHCEEEEEEEEcCCCce-EEEEEEEEcCCCc
Confidence            9999999999999765332111    11233455566889999886 8999999999999999976 6678888887777


Q ss_pred             cccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCccEEEccCccEEEeeeeecCCeeeEEEEeeecccc
Q psy14896        298 FNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDT  377 (813)
Q Consensus       298 ~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~  377 (813)
                      +.+.+....+.+|+.++|.|.+ .|.|.+.++|+|||.++..         .++.|.|.+++.+|+|.|+|.|.|..|..
T Consensus       346 ~~~~~~~~~v~~G~~v~l~C~~-~g~p~~~v~W~k~g~~~~~---------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~  415 (816)
T 3dmk_A          346 AKIDPPTQTVDFGRPAVFTCQY-TGNPIKTVSWMKDGKAIGH---------SESVLRIESVKKEDKGMYQCFVRNDRESA  415 (816)
T ss_dssp             EEEESSEEECCTTSCEEEEEEE-EEECCCEEEEEETTEECSC---------CSSEEEESSCCGGGCEEEEEEEECSSCEE
T ss_pred             eeeCCCceEecCCCCEEEEEEE-eccCCCEEEEEECCEECCC---------CCCEEEEcCCCHHHCEEEEEEEECCCCcE
Confidence            7777777788899999999995 6789999999999987421         24679999999999999999999987643


Q ss_pred             CCCCCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEEEEeecCCCeeeEeecCCcCCCCceecc---------
Q psy14896        378 GRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFEN---------  448 (813)
Q Consensus       378 ~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~~~~l~~~~~~~~---------  448 (813)
                      ...   +.|.|.....     +|..........+.+|+.+.|.|.+.|+|.|.++|++++..+.....+..         
T Consensus       416 ~~~---~~l~v~~~~~-----~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~  487 (816)
T 3dmk_A          416 EAS---AELKLGGRFD-----PPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGD  487 (816)
T ss_dssp             EEC---CEEECCCSSC-----CCEEEEECCCEEECSSSCEEEEEEEECSSCCEEEEEETTEECCSCTTEEEEEEECTTSC
T ss_pred             EEE---EEEEEccccC-----CCceEecCcceEEcCCCCEEEEEEEecCCCCEEEEEECCEECCCCCCcccccEEecCCC
Confidence            322   4555542211     11111112234688999999999999999999999999999876554331         


Q ss_pred             ccceEEEcccc--cccceEEeCCCceEe-------c-----------ccccccccCeEEEEEeeccCCCcEEEeeccccc
Q psy14896        449 FNRILTIPNVK--MRGPYFIKQPTDVVF-------D-----------LSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQ  508 (813)
Q Consensus       449 ~~~~l~i~~~~--~~g~y~~~~~~~~~~-------~-----------~~~~~~g~~~~l~C~~~g~p~~~v~W~k~~~~~  508 (813)
                      ....|.|.++.  ++|.|+|.+.+....       .           ......|+.+.|.|.+.|.|.+.|.|+|+|..+
T Consensus       488 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~~~~l  567 (816)
T 3dmk_A          488 VVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRAL  567 (816)
T ss_dssp             EEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEECSSCEECCCCCEEEETTCCEEEECCEECSSEEEEEEEETTEES
T ss_pred             cEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEecCCeeEccCCeEEecCCeEEEEEEecCCCCCEEEEEECCeEc
Confidence            12358888765  489999987543211       0           112356899999999999999999999999653


Q ss_pred             cceeccccCCCCCceEEeeCCeEEEeCCCC-CCCCceEEEEEEcCceeEEeecEEEEEeeccccccc-CCCceeccCCCc
Q psy14896        509 DRLVANLIDPLSDKRFTLSGGNLIINDPRQ-VEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK-RAPEIGNQNWGK  586 (813)
Q Consensus       509 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~p~~~~~-~~~~~~~~g~~~  586 (813)
                      .         .........+++|.|.++ . .+|+|.|+|.|.|..|...+..+.+.|..+|.+... .....+..|+.+
T Consensus       568 ~---------~~~~~~~~~~~~l~i~~v-~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~~~~~~~~~~~~~G~~v  637 (816)
T 3dmk_A          568 P---------INRKQKVFPNGTLIIENV-ERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYL  637 (816)
T ss_dssp             C---------CSTTEEECTTSEEEESSC-CHHHHCEEEEEEEEESSSCEEEEEEEEEEECCCCCBCCCCCSSCEESSCEE
T ss_pred             c---------cCCceEEecCCeEEEEec-CccccCEEEEEEEEECCCceeeeeEEEEEecCCccccccccccccCCCCeE
Confidence            2         122223346789999997 5 589999999999999976666778888777765432 344567889999


Q ss_pred             eEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEe--eCccEEEEeecccCCeeEEEEEEeeecCccccCceeeEEEccC
Q psy14896        587 AMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVS--YDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPH  664 (813)
Q Consensus       587 ~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~  664 (813)
                      +|.|.+..+.+++.|+|+|+|.++...........  ..++|.|.+++.+|+|.|+|.|.|..|....   .+.|.|..+
T Consensus       638 ~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~---~~~l~V~~~  714 (816)
T 3dmk_A          638 TLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQF---TTPLNVYVP  714 (816)
T ss_dssp             EEEEBCCCSSSCCEEEEEETTBCCCGGGTCEEEEETTTEEEEEEESCCGGGCEEEEEEEECSSCEEEE---EEEECEEEE
T ss_pred             EEEEEEeCCCCCCEEEEEECCeEcCCCCCeeEEEcCCCeeEEEEccCChhhCEEEEEEEEeCCccEEE---EEEEEEEeC
Confidence            99999955555669999999987532222222211  1246999999999999999999999987543   467888887


Q ss_pred             CCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCC-------ceeeecceEEEECCCCCCCCE
Q psy14896        665 SNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRN-------AYFENFNRILTIPNVKVEDQG  737 (813)
Q Consensus       665 p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~-------~~~~~~~~~L~i~~v~~~d~G  737 (813)
                      |.+...        +....+.+|++++|.|.+.|.|+|.|+|+|++..+...       .+....+++|.|.+++.+|+|
T Consensus       715 P~~~~~--------~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G  786 (816)
T 3dmk_A          715 PRWILE--------PTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEG  786 (816)
T ss_dssp             EEEEEC--------CCCEEEETTCCEEEECEEEEESCCEEECCEECSSSTTCCBCCCCBTTEEEETTEEEECSCCGGGCE
T ss_pred             Cceeee--------cccceecCCCcEEEEEEEecCCCCeEEEEecCCCCCccccccccCCCEEecCCEEEECcCChhhCe
Confidence            765421        12356789999999999999999999999998665432       223334568999999999999


Q ss_pred             EEEEEEEcCCCceEEEEEEEEEcCC
Q psy14896        738 EYICRASNDRSALESSVTISIQAEP  762 (813)
Q Consensus       738 ~Y~C~a~N~~G~~~~~~~l~V~~~P  762 (813)
                      .|+|+|.|.+|++..++.+..+..|
T Consensus       787 ~Y~C~a~N~~G~~~~~v~~~~~~~~  811 (816)
T 3dmk_A          787 YYLCEAINGIGSGLSAVIMISVQAH  811 (816)
T ss_dssp             EEEEEEECSSSSCEEEEEEEEEEC-
T ss_pred             EEEEEEEeCCCCCcEEEEEEEeecc
Confidence            9999999999999999988887654

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=100.00  E-value=1.6e-56  Score=528.31  Aligned_cols=579  Identities=17%  Similarity=0.201  Sum_probs=118.5

Q ss_pred             ccceeeccCCCceeeeeeecccccceEeeccccceeeeeeeCCCCCCCCCceeeCCCceeecCCCccccccEEEEeeecc
Q psy14896        141 RWGFERVTGMEPLLFICEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGG  220 (813)
Q Consensus       141 ~l~i~~~~~~d~~~y~C~~~~~~~~~~~~~~~~~~~~l~v~~p~~~~~~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g  220 (813)
                      .|.|.+++..|.|.|.|.+..        ...+..+.|.|..|.. +..|.+...+..+.+.+|..   ++++|.|.+.+
T Consensus        87 ~l~I~~~~~~d~G~Y~C~~~~--------~~~~~~~~v~v~~~~~-~~~~~~~~~~~~~~v~~G~~---~~v~L~C~~~~  154 (772)
T 3v2a_R           87 TLTIPKVIGNDTGAYKCFYRE--------TDLASVIYVYVQDYRS-PFIASVSDQHGVVYITENKN---KTVVIPCLGSI  154 (772)
T ss_dssp             ------------------------------------------------------CEEEEEEESSCC---CEEEECCCCSC
T ss_pred             EEEECCCcHhhCEeEEEEEcC--------CCEEEEEEEEECCCCC-CceEcCcccceeEEEecCCC---CeEEEEccCCC
Confidence            688889999999999999851        2223333444443321 10111223345566655511   66999999987


Q ss_pred             CCCCeEEEeec--ccccccccccccccCCCccEEee-CCeEEEcCCccccCCeeEEEEeecCceeeEeeeeEEeeeeec-
Q psy14896        221 YPNPSYEWFKE--DYVQDRLVANLIDPLSDKRFTLS-GGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIG-  296 (813)
Q Consensus       221 ~P~p~v~W~k~--g~~l~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~-  296 (813)
                       |.+.+.|+|+  +..+.         ..+...... ...|.|.+. +.+|+|.|+|.|.+..+...+....+.+...+ 
T Consensus       155 -p~~~v~w~~~~~~~~~~---------~~~~~~~~~~~~~l~i~~~-~~~d~G~Y~C~~~~~~~~~~s~~~~~~v~~~~~  223 (772)
T 3v2a_R          155 -SNLNVSLCARYPEKRFV---------PDGNRISWDSKKGFTIPSY-MISYAGMVFCEAKINDESYQSIMYIVVVVGYRI  223 (772)
T ss_dssp             -SSCCEEEEEETTTEEEC---------CCSSSCEEETTTEEEEEGG-GTTTCSEEEEEEEETTEEEECCEEEEEEECCCE
T ss_pred             -CCcEEEEEecCCCcccc---------CCCceeecCCCCCeEecCC-ChhhCeEEEEEEEECCceEEEEEEEEEEecCcc
Confidence             8899999998  65431         122222333 456777774 89999999999998766554544555554332 


Q ss_pred             -ccccCCC-CceeecCCCeEEEecCCCC-CCcceEEEeeccccccccCCcc---------EEEccCccEEEeeeeecCCe
Q psy14896        297 -EFNLKRA-PEIGNQNWGKAMFCDPPTN-YPGVNYYWARDYFPNFVEEDKR---------VFVSYDGALYFSALEQIDAG  364 (813)
Q Consensus       297 -~~~~~~~-~~~~~~~~~~~l~C~~~~~-~p~~~v~W~k~~~~~~~~~~~~---------~~~~~~~~L~i~~v~~~D~G  364 (813)
                       .+.+.+. +..+.+|+.++|.|.+... .|.+.+.|++++..+.......         ......+.|.|.+++.+|+|
T Consensus       224 ~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G  303 (772)
T 3v2a_R          224 YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQG  303 (772)
T ss_dssp             EEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCS
T ss_pred             ceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCe
Confidence             2333333 3578899999999997432 5668999999988642211110         00112347999999999999


Q ss_pred             eeEEEEeeeccccCCCCCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEEEEeecCCCeeeEeecCCcCCCCc
Q psy14896        365 NYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA  444 (813)
Q Consensus       365 ~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~~~~l~~~~  444 (813)
                      .|+|.|.|..+..   +..+.|.|..+|.+.....     ......+.+|+.+.|.|.+.|+|.|.+.|++++.++....
T Consensus       304 ~Y~C~~~~~~~~~---~~~~~l~V~~~p~~~~~~~-----~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~g~~l~~~~  375 (772)
T 3v2a_R          304 LYTCAASSGLMTK---KNSTFVRVHEKPFVAFGSG-----MESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNH  375 (772)
T ss_dssp             EEEEEEECSSCEE---EEEEEEEEECCCC---------------------------------------------------
T ss_pred             EEEEEEEcCCcce---eEEEEEEEeCCCeeEeccC-----CCCcEEEcCCCcEEEEEEEeeeCCCeEEEEECCEeCCCCc
Confidence            9999999877643   3347788877654322110     1123568999999999999999999999999999987754


Q ss_pred             eeccccceEEEcccc--cccceEEeCCCceE---------ec----c-----------cccccccCeEEEEEeeccCCCc
Q psy14896        445 YFENFNRILTIPNVK--MRGPYFIKQPTDVV---------FD----L-----------SKRSILNDITLSCYAGGYPNPS  498 (813)
Q Consensus       445 ~~~~~~~~l~i~~~~--~~g~y~~~~~~~~~---------~~----~-----------~~~~~g~~~~l~C~~~g~p~~~  498 (813)
                      .+. ....|.|.++.  ++|.|+|.+.+...         +.    +           .....|+.++|.|.+.|.|.|.
T Consensus       376 ~~~-~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~  454 (772)
T 3v2a_R          376 TIK-AGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPH  454 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eEc-cceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEecCCcccccccCCCccccCCCCcEEEEeEeccCCCCc
Confidence            433 34677777765  47999998654321         00    0           1145689999999999999997


Q ss_pred             -EEEeecccccccee------------------------ccccCCCCCceEEe-e-----CCeEEEeCCCCCCCCceEEE
Q psy14896        499 -YEWFKEDYVQDRLV------------------------ANLIDPLSDKRFTL-S-----GGNLIINDPRQVEDRGSYHC  547 (813)
Q Consensus       499 -v~W~k~~~~~~~~~------------------------~~~~~~~~~~~~~~-~-----~~~l~i~~~~~~~d~G~Y~C  547 (813)
                       |.|++++.......                        ...+... ..+... .     ...|.|.++   +|+|.|+|
T Consensus       455 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~-~~~~~~~~~~~~~~~~L~i~~~---~d~G~Y~C  530 (772)
T 3v2a_R          455 HIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVN-KNQFALIEGKNKTVSTLVIQAA---NVSALYKC  530 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEEEcCCccccccccccccccCcCccccccccccccCCCcEEEe-ccceeeccCcceEEEEEEEeec---ccCeEEEE
Confidence             99999753210000                        0000000 011111 1     146666653   79999999


Q ss_pred             EEEcCceeEEeecEEEEEeecccccccCCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEE--------
Q psy14896        548 KASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVF--------  619 (813)
Q Consensus       548 ~a~n~~g~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~--------  619 (813)
                      .|.|..|.. +..+.|.|..+|.+...+. ..+.+|+.++|.|.+ .+.|.+.|+|+|++..+.........        
T Consensus       531 ~a~N~~g~~-~~~~~l~V~~~p~i~~~p~-~~~~~G~~v~l~C~~-~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~  607 (772)
T 3v2a_R          531 EAVNKVGRG-ERVISFHVTRGPEITLQPD-MQPTEQESVSLWCTA-DRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLD  607 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEcccccc-ceeEEEEEECCceeeccCC-cccccCCceEEEEec-cCCCCCCcEEEEcCCcccccccCccccccccccc
Confidence            999999976 3447788877776554433 346789999999999 78899999999998653222111111        


Q ss_pred             --------EeeC-----ccEEEEeecccCCeeEEEEEEeeecCccc-cCceeeEEEccCCCccccccCCCCCCCCCcCCC
Q psy14896        620 --------VSYD-----GALYFSALEQIDAGNYSCNVQSKVSDTGR-NGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK  685 (813)
Q Consensus       620 --------~~~~-----~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~  685 (813)
                              ...+     .+|.|.++..+|+|.|+|.|.|..|.... ....+.+.+..+|.+..        .+....+.
T Consensus       608 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~~~~P~~~~--------~~~~~~v~  679 (772)
T 3v2a_R          608 TLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITG--------NLENQTTS  679 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ceeeccceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeecccccCCCEeec--------CCCceEEe
Confidence                    0012     23999999999999999999997654322 22233344455554432        22336789


Q ss_pred             CCCeEEEEEEecCCCCCeEEEEeCCcccCCCcee--eecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCCc
Q psy14896        686 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF--ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPN  763 (813)
Q Consensus       686 ~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~  763 (813)
                      +|++++|.|.+.|.|.|.|+|+|||.+|..+.++  ....++|.|.++..+|+|.|+|+|.|.+|.+++++.|.|.++|.
T Consensus       680 ~g~~~~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p~  759 (772)
T 3v2a_R          680 IGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQE  759 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCEEEEEEeCccCCCeEEEEECCeECcCCCCeEEcCCCcEEEECcCCHHHCEEEEEEEEeCCcceeEEEEEEEECCCC
Confidence            9999999999999999999999999999876543  33367899999999999999999999999999999999999998


Q ss_pred             ccc
Q psy14896        764 FTI  766 (813)
Q Consensus       764 ~~~  766 (813)
                      ...
T Consensus       760 ~~~  762 (772)
T 3v2a_R          760 KTN  762 (772)
T ss_dssp             ---
T ss_pred             ccc
Confidence            653

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=100.00  E-value=4.2e-55  Score=516.24  Aligned_cols=568  Identities=17%  Similarity=0.227  Sum_probs=101.1

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccC
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED  268 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d  268 (813)
                      +|.|...+....+..|     ++|+|.|.+.+    .+.|++++..........+....+.   ....+|.|.+. +.+|
T Consensus        31 ~p~l~~~~~~~~v~~G-----~~vtL~C~~~~----~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~~l~I~~~-~~~d   97 (772)
T 3v2a_R           31 LPRLSIQKDILTIKAN-----TTLQITCRGQR----DLDWLWPNNQSGSEQRVEVTECSDG---LFCKTLTIPKV-IGND   97 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCEECCCCCeEEEcCC-----CCEEEEEeccC----CeeeeCCCCCCccCCceeEEEcCCC---cEEEEEEECCC-cHhh
Confidence            5667666677777777     66999999764    6899988753211100000000000   01346777775 8999


Q ss_pred             CeeEEEEeecCceeeEeeeeEEeeeeecccccC-----CCCceeecC--CCeEEEecCCCCCCcceEEEeec--cccccc
Q psy14896        269 RGSYHCKASNKFGSIISESVQLAFGFIGEFNLK-----RAPEIGNQN--WGKAMFCDPPTNYPGVNYYWARD--YFPNFV  339 (813)
Q Consensus       269 ~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~-----~~~~~~~~~--~~~~l~C~~~~~~p~~~v~W~k~--~~~~~~  339 (813)
                      +|.|+|.+.+..   .+..+.|.|..+..+.+.     .....+.+|  +.++|.|.+..  |.+.++|+|+  +..+. 
T Consensus        98 ~G~Y~C~~~~~~---~~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~G~~~~v~L~C~~~~--p~~~v~w~~~~~~~~~~-  171 (772)
T 3v2a_R           98 TGAYKCFYRETD---LASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSI--SNLNVSLCARYPEKRFV-  171 (772)
T ss_dssp             -------------------------------------CEEEEEEESSCCCEEEECCCCSC--SSCCEEEEEETTTEEEC-
T ss_pred             CEeEEEEEcCCC---EEEEEEEEECCCCCCceEcCcccceeEEEecCCCCeEEEEccCCC--CCcEEEEEecCCCcccc-
Confidence            999999998321   144556665533332221     233456668  77999999743  8899999998  55432 


Q ss_pred             cCCccEEEccCccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCcc-cccccCCCCCCCCCcCCCCCCcEE
Q psy14896        340 EEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNF-QQLKFPNNFPKTFPEAPKAGDKVR  418 (813)
Q Consensus       340 ~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~-~~~~~~~~~~~~~~~~v~~g~~~~  418 (813)
                      .............|.|.+++.+|+|.|+|.+.+...  ...+..+.+.+...+.. ..+.++      .+..+.+|+.+.
T Consensus       172 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~--~~~s~~~~~~v~~~~~~~v~~~~~------~~~~v~~G~~v~  243 (772)
T 3v2a_R          172 PDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDE--SYQSIMYIVVVVGYRIYDVVLSPS------HGIELSVGEKLV  243 (772)
T ss_dssp             CCSSSCEEETTTEEEEEGGGTTTCSEEEEEEEETTE--EEECCEEEEEEECCCEEEEEEECC------SCEEEETTCCEE
T ss_pred             CCCceeecCCCCCeEecCCChhhCeEEEEEEEECCc--eEEEEEEEEEEecCccceeeeCCC------CceEEecCCcEE
Confidence            223333445566899999999999999999997533  22233344444332221 111111      124689999999


Q ss_pred             EEEEEee--cCCCeeeEeecCCcCCCCcee------------ccccceEEEcccc--cccceEEeCCCce---------E
Q psy14896        419 LECVAFG--YPVPSYNWTRRGSPLPRNAYF------------ENFNRILTIPNVK--MRGPYFIKQPTDV---------V  473 (813)
Q Consensus       419 l~C~~~g--~p~p~i~W~~~~~~l~~~~~~------------~~~~~~l~i~~~~--~~g~y~~~~~~~~---------~  473 (813)
                      |.|.+.+  .|.+.+.|++++..+......            ......|.|.++.  ++|.|+|.+.+..         .
T Consensus       244 L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~  323 (772)
T 3v2a_R          244 LNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVR  323 (772)
T ss_dssp             EEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECSSCEEEEEEEEE
T ss_pred             EEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEcCCcceeEEEEEE
Confidence            9999998  456689999999886553221            2234568888876  4899999864321         1


Q ss_pred             ec-------------ccccccccCeEEEEEeeccCCCcEEEeeccccccceeccccCCCCCceEEeeCCeEEEeCCCCCC
Q psy14896        474 FD-------------LSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE  540 (813)
Q Consensus       474 ~~-------------~~~~~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~  540 (813)
                      +.             .....+|+.++|.|.+.|+|.+.+.|+|+|..+..          ...+ ...+.|.|.++ ..+
T Consensus       324 V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~g~~l~~----------~~~~-~~~~~L~i~~v-~~~  391 (772)
T 3v2a_R          324 VHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLES----------NHTI-KAGHVLTIMEV-SER  391 (772)
T ss_dssp             EECCCC--------------------------------------------------------------------------
T ss_pred             EeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCCeEEEEECCEeCCC----------CceE-ccceeEEEecC-Chh
Confidence            10             11235689999999999999999999999965421          1111 13478999997 999


Q ss_pred             CCceEEEEEEcCceeEE-eecEEEEEeeccccccc---CCCceeccCCCceEEeCCCCCCCccE-EEEccCCCCCc----
Q psy14896        541 DRGSYHCKASNKFGSII-SESVQLAFGFIGEFNLK---RAPEIGNQNWGKAMFCDPPTNYPGVN-YYWARDYFPNF----  611 (813)
Q Consensus       541 d~G~Y~C~a~n~~g~~~-s~~~~l~v~~~p~~~~~---~~~~~~~~g~~~~l~C~~~~~~p~~~-v~W~k~~~~~~----  611 (813)
                      |+|.|+|.|.|..|... +..+.|.|..+|.+...   .....+.+|+.++|.|.+ .+.|.+. |+|++++....    
T Consensus       392 d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~~~~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~~v~W~~~~~~~~~~~~  470 (772)
T 3v2a_R          392 DTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTV-YAIPPPHHIHWYWQLEEECANEP  470 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCceEEEEEEECCcCeEEEEEEEEEEecCCcccccccCCCccccCCCCcEEEEeEe-ccCCCCcEEEEEEcCCccccccc
Confidence            99999999999988643 44567788877765432   111247789999999999 7889887 99999742100    


Q ss_pred             --------------------------cc-CCCeEEEee-----CccEEEEeecccCCeeEEEEEEeeecCccccCceeeE
Q psy14896        612 --------------------------VE-EDKRVFVSY-----DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPL  659 (813)
Q Consensus       612 --------------------------~~-~~~~~~~~~-----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l  659 (813)
                                                +. ...+.....     .++|.|.++  +|+|.|+|.|.|..|....   .+.|
T Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~~---~~~l  545 (772)
T 3v2a_R          471 SQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAA--NVSALYKCEAVNKVGRGER---VISF  545 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccCcCccccccccccccCCCcEEEeccceeeccCcceEEEEEEEeec--ccCeEEEEEEEccccccce---eEEE
Confidence                                      00 011111111     135888877  7999999999999986543   3667


Q ss_pred             EEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCcee--------------------
Q psy14896        660 KVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF--------------------  719 (813)
Q Consensus       660 ~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~--------------------  719 (813)
                      .|..+|.+...  |       ...+.+|++++|.|.+.|.|.|.|+|+|+|..+......                    
T Consensus       546 ~V~~~p~i~~~--p-------~~~~~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  616 (772)
T 3v2a_R          546 HVTRGPEITLQ--P-------DMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATM  616 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEECCceeecc--C-------CcccccCCceEEEEeccCCCCCCcEEEEcCCcccccccCcccccccccccceeecccee
Confidence            77776644321  1       134789999999999999999999999998776432211                    


Q ss_pred             --e--ecceEEEECCCCCCCCEEEEEEEEcCCCceE--EEEEEEE--EcCCcccccCCceeecCCCeEEEEEEEcccCCc
Q psy14896        720 --E--NFNRILTIPNVKVEDQGEYICRASNDRSALE--SSVTISI--QAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDV  791 (813)
Q Consensus       720 --~--~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~--~~~~l~V--~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~  791 (813)
                        .  .....|+|.+++.+|+|.|+|.|.|..|...  ..+.|.|  ..+|.|...+.+..+.+|++++|.|.+.|.|+|
T Consensus       617 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~~~~P~~~~~~~~~~v~~g~~~~l~C~~~g~P~p  696 (772)
T 3v2a_R          617 FSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPP  696 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eecCCCceEEEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeecccccCCCEeecCCCceEEeCCCCEEEEEEeCccCCC
Confidence              0  1123599999999999999999999765432  2344444  788999888888889999999999999999999


Q ss_pred             eEEEEECCEeccccccccc
Q psy14896        792 TYSWFRNGELGHQMTDLLL  810 (813)
Q Consensus       792 ~v~W~k~g~~l~~~~~~~i  810 (813)
                      +|+|+|||++|..+.++.+
T Consensus       697 ~v~W~k~g~~l~~~~~~~~  715 (772)
T 3v2a_R          697 QIMWFKDNETLVEDSGIVL  715 (772)
T ss_dssp             -------------------
T ss_pred             eEEEEECCeECcCCCCeEE
Confidence            9999999999988766544

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=100.00  E-value=3.4e-51  Score=459.10  Aligned_cols=450  Identities=18%  Similarity=0.245  Sum_probs=319.5

Q ss_pred             CCCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCcccc
Q psy14896        188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE  267 (813)
Q Consensus       188 ~~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~  267 (813)
                      .||.|...+.+..+.+|     ++++|.|.+.|    .|+|+|+|..+           .   .....++|.|.+. +.+
T Consensus        35 ~pP~i~~~~~~~~v~~G-----~~v~l~C~~~~----~v~W~~~~~~~-----------~---~~~~~~~L~I~~~-~~~   90 (524)
T 2ec8_A           35 SPPSIHPGKSDLIVRVG-----DEIRLLCTDPG----FVKWTFEILDE-----------T---NENKQNEWITEKA-EAT   90 (524)
T ss_dssp             CCCEEESCCSEEECCTT-----SCEEEEEECTT----EEEEEEESSSC-----------C---EEECSSEEEESSC-CST
T ss_pred             CCCccCCCCceEEEeCC-----CeEEEEEeCCc----eEEEcCCCccc-----------c---ccCccceEEEccc-chh
Confidence            34778777788888777     67999999987    99999999754           1   2344678888885 899


Q ss_pred             CCeeEEEEeecCceeeEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCcceEEEee-ccccccccCCccEE
Q psy14896        268 DRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWAR-DYFPNFVEEDKRVF  346 (813)
Q Consensus       268 d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k-~~~~~~~~~~~~~~  346 (813)
                      |+|.|+|.|.|  |.  +..+.|.|..++.+........+.+|+.++|.|.+ .+.|.+.++|++ ||.+  +....++.
T Consensus        91 D~G~Y~C~a~n--g~--~~~~~l~V~~p~~~~~~~~~~~v~~G~~v~l~C~~-~~~~~~~v~W~~~~g~~--l~~~~~~~  163 (524)
T 2ec8_A           91 NTGKYTCTNKH--GL--SNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPL-TDPEVTNYSLKGCQGKP--LPKDLRFI  163 (524)
T ss_dssp             TCEEEEEEETT--SC--EEEEEEECCCSSCSBCCCCCCCEETTSCEEECCCB-SCCCCSCEEEECSSSCC--CCSSCEEE
T ss_pred             hCEEEEEeecC--Cc--ceEEEEEECCCCcccccccceEEEcCCeEEEECcC-CCCccceEEEEccCCcC--cCCCCcee
Confidence            99999999999  53  66788888777666666777888999999999996 465669999988 7776  44566777


Q ss_pred             EccCccEEEeeeeecCCe-eeEEEEeeeccccCCCCCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEEEEee
Q psy14896        347 VSYDGALYFSALEQIDAG-NYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFG  425 (813)
Q Consensus       347 ~~~~~~L~i~~v~~~D~G-~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~~g  425 (813)
                      ...++.|.|.+++.+|+| .|+|.|.|..+..  .+..+.|.|...+.    .+|..........+.+|+.+.|.|.+.+
T Consensus       164 ~~~~~~L~i~~~~~~d~G~~Y~C~a~n~~~~~--~s~~~~l~V~~~~~----~~p~i~~~~~~~~v~~G~~v~L~C~~~g  237 (524)
T 2ec8_A          164 PDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSV--LSEKFILKVRPAFK----AVPVVSVSKASYLLREGEEFTVTCTIKD  237 (524)
T ss_dssp             EETTTEEEEESCCGGGTTCEEEEEEC----CC--CCCCEECCEECCCC----SCCEEECSCSEEEEETTSCEEEEEEEEE
T ss_pred             ECCCccEEEeccchhhCCceEEEEEEECCceE--EEEEEEEEEEeCCC----CCCcEEecCCcceEEcCCcEEEEEEEec
Confidence            778889999999999999 9999999986532  23457777763111    0111111122346889999999999999


Q ss_pred             cCCCe-eeEeecCCcC--CCCceeccccceEEEcccccccceEEeCCCceEecccccccccCeEEEEEeeccCCCcEEEe
Q psy14896        426 YPVPS-YNWTRRGSPL--PRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWF  502 (813)
Q Consensus       426 ~p~p~-i~W~~~~~~l--~~~~~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~  502 (813)
                      .|.|. +.|++++..+  .....                                                      ..+
T Consensus       238 ~p~p~~i~W~~~~~~~~~~~~~~------------------------------------------------------~~~  263 (524)
T 2ec8_A          238 VSSSVYSTWKRENSQTKLQEKYN------------------------------------------------------SWH  263 (524)
T ss_dssp             SSTTCEEEEEETTCSCCCCEEEE------------------------------------------------------EEE
T ss_pred             CCCcEEEEEEeCCCCCccccccc------------------------------------------------------ccc
Confidence            88886 9999988774  11100                                                      000


Q ss_pred             eccccccceeccccCCCCCceEEeeCCeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEEeecccccccC---CCce
Q psy14896        503 KEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKR---APEI  579 (813)
Q Consensus       503 k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~p~~~~~~---~~~~  579 (813)
                      .                 ........+.|.|.++ ..+|+|.|+|.|.|..|...+ .+.|.|..+|.+...+   ....
T Consensus       264 ~-----------------~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a~n~~g~~~~-~~~l~V~~~p~~~~~~~~~~~~~  324 (524)
T 2ec8_A          264 H-----------------GDFNYERQATLTISSA-RVNDSGVFMCYANNTFGSANV-TTTLEVVDKGFINIFPMINTTVF  324 (524)
T ss_dssp             C-----------------SSSCEEEEEEEEESSC-CTTTCEEEEEEEECSSCEEEE-EEEEEEESSCEEEEEESSCSEEE
T ss_pred             c-----------------cCCccceEEEEEECCC-CHHHCEEEEEEEEecCCceEE-EEEEEEeccCceEeecCCCceEE
Confidence            0                 0001123468999997 899999999999999998755 6888888887765543   2467


Q ss_pred             eccCCCceEEeCCCCCCCccE-EEEccCCCCCcccCCCeEEEeeC-------ccEEEEeecccCCeeEEEEEEeeecCcc
Q psy14896        580 GNQNWGKAMFCDPPTNYPGVN-YYWARDYFPNFVEEDKRVFVSYD-------GALYFSALEQIDAGNYSCNVQSKVSDTG  651 (813)
Q Consensus       580 ~~~g~~~~l~C~~~~~~p~~~-v~W~k~~~~~~~~~~~~~~~~~~-------~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  651 (813)
                      +.+|+.++|.|.+ .|.|.+. |+|+|+|.++..... ++....+       ++|.|.+++.+|+|.|+|.|.|..|...
T Consensus       325 v~~G~~v~l~C~~-~g~P~p~~v~W~k~g~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~  402 (524)
T 2ec8_A          325 VNDGENVDLIVEY-EAFPKPEHQQWIYMNRTFTDKWE-DYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAA  402 (524)
T ss_dssp             ECTTCCEEEEEEE-EEESCCCEEEEESSSCBCSSSBC-CEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEE
T ss_pred             EcCCCcEEEEEEE-eecCCCcEEEEEECCeeccCCcc-ceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEE
Confidence            8899999999999 8999999 999999987433322 3333322       3699999999999999999999998743


Q ss_pred             ccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCC--------Cce----e
Q psy14896        652 RNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPR--------NAY----F  719 (813)
Q Consensus       652 ~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~--------~~~----~  719 (813)
                         ..+.|.|..+|.+....           .+.+|   +|.|.+.|.|.|.|+|+|+|..+..        +.+    .
T Consensus       403 ---~~~~l~V~~~P~i~~~~-----------~~~~g---~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~  465 (524)
T 2ec8_A          403 ---IAFNVYVNTKPEILTYD-----------RLVNG---MLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSS  465 (524)
T ss_dssp             ---EEEEEEECEEEEEEEEE-----------CCSSS---CEEEEEEEESCCEEECCCC----------CCCCCCCCCCC-
T ss_pred             ---EEEEEEEecCCeEeecc-----------cCcCc---EEEEEEEeecCCEEEEEECCCcccccccccCCCCceeeeec
Confidence               34789998888765431           13456   9999999999999999999876621        111    1


Q ss_pred             eecceEEE----ECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCCcccc
Q psy14896        720 ENFNRILT----IPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTI  766 (813)
Q Consensus       720 ~~~~~~L~----i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~~~~  766 (813)
                      ....+.|.    |.....+|+|.|+|.|.|.+|..+..+.|.|+++|....
T Consensus       466 ~~~~g~~~~~s~l~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~e~~~~~~  516 (524)
T 2ec8_A          466 GPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKEQI  516 (524)
T ss_dssp             CCSSSCEEEEEEECCCSCCC-----CEEECSSCEEECCCCCCC--------
T ss_pred             cCCCCcceEEEEEEEEEccCCEEEEEEEEcCCCceEEEEEEEEecCCHHHc
Confidence            12223333    444456999999999999999999999999998876543

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=100.00  E-value=2e-48  Score=443.32  Aligned_cols=465  Identities=17%  Similarity=0.189  Sum_probs=332.8

Q ss_pred             CCCceeecCCCccccccEEEEeeeccCCCC---eEEEeeccccccc--cc--ccccccCCCccEEee----CC--eEEEc
Q psy14896        195 QPTDVVFDLSKRSILNDITLSCYAGGYPNP---SYEWFKEDYVQDR--LV--ANLIDPLSDKRFTLS----GG--NLIIN  261 (813)
Q Consensus       195 ~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p---~v~W~k~g~~l~~--~~--~~~~~~~~~~~~~~~----~~--~l~i~  261 (813)
                      .|.++.+.+|     ++++|.|.+.+.|.+   .|.|||++..+..  ..  ..........|+.+.    ++  +|.|.
T Consensus         6 ~P~~v~v~~G-----~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~   80 (585)
T 2ocw_A            6 GPEEVNSVEG-----NSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIA   80 (585)
T ss_pred             CcceeEEecC-----CcEEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEEC
Confidence            4567777777     679999999987654   8999999864310  00  000011122344442    33  47777


Q ss_pred             CCccccCCeeEEEEeecCceeeEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccc--
Q psy14896        262 DPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFV--  339 (813)
Q Consensus       262 ~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~--  339 (813)
                      +. +.+|+|.|+|.|.|..|.. +..+.|.|..+|.+...+....+.+|+.++|.|.+..+.|.+.+.|+|++.....  
T Consensus        81 ~v-~~~D~G~Y~C~~~n~~~~~-~~~~~l~V~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~  158 (585)
T 2ocw_A           81 QL-SQDDSGRYKCGLGINSRGL-SFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLV  158 (585)
T ss_pred             CC-CcccCEEEEEEcccCCCCc-eEEEEEEEecCccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEE
Confidence            75 8999999999999988876 6779999988888877778888999999999999866667789999999864211  


Q ss_pred             -c--------CCccEEEccCc------cEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCcccccccCCCCC
Q psy14896        340 -E--------EDKRVFVSYDG------ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFP  404 (813)
Q Consensus       340 -~--------~~~~~~~~~~~------~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~  404 (813)
                       .        ...|+.+..++      +|.|.+++.+|+|.|+|.|.|..|..   +..+.|.|..+++           
T Consensus       159 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~---~~~~~l~V~~~~p-----------  224 (585)
T 2ocw_A          159 IDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSN---KKNADLQVLKPEP-----------  224 (585)
T ss_pred             ecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccc---cceEEEEEccCCC-----------
Confidence             1        13455554444      69999999999999999999887753   3447888865421           


Q ss_pred             CCCCcCCCCCCcEEEEEEEeecCC---CeeeEe-ecCCcCCCCceeccccceEEEcccccccceEEeCCCceEecccccc
Q psy14896        405 KTFPEAPKAGDKVRLECVAFGYPV---PSYNWT-RRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRS  480 (813)
Q Consensus       405 ~~~~~~v~~g~~~~l~C~~~g~p~---p~i~W~-~~~~~l~~~~~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~  480 (813)
                        ....+.+|+.+.|.|.+ +.|.   +.+.|+ +++..+..-.                                    
T Consensus       225 --~~~~~~~G~~v~l~C~~-~~~~~~~~~~~w~~~~g~~~~~~~------------------------------------  265 (585)
T 2ocw_A          225 --ELVYEDLRGSVTFHCAL-GPEVANVAKFLCRQSSGENCDVVV------------------------------------  265 (585)
T ss_pred             --ceeEEcCCCcEEEEEEc-CCCCCCceEEEEEeCCCCCcceEE------------------------------------
Confidence              11357799999999997 4444   578886 7764332100                                    


Q ss_pred             cccCeEEEEEeeccCCCcEEEeeccccccceeccccCCCCCceEEee----CC--eEEEeCCCCCCCCceEEEEEEcCce
Q psy14896        481 ILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS----GG--NLIINDPRQVEDRGSYHCKASNKFG  554 (813)
Q Consensus       481 ~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~----~~--~l~i~~~~~~~d~G~Y~C~a~n~~g  554 (813)
                                           ..++.         .......++.+.    ++  +|.|.++ ..+|+|.|+|.|.|. |
T Consensus       266 ---------------------~~~~~---------~~~~~~~~~~~~~~~~~g~~~L~i~~v-~~~d~G~Y~C~a~n~-g  313 (585)
T 2ocw_A          266 ---------------------NTLGK---------RAPAFEGRILLNPQDKDGSFSVVITGL-RKEDAGRYLCGAHSD-G  313 (585)
T ss_pred             ---------------------eCCCc---------CCcccCCceEeeccCCCcEEEEEEccC-ChhhCEEEEEEEEcC-C
Confidence                                 00000         000011222221    33  7999997 999999999999995 4


Q ss_pred             eEE----eecEEEEEeecccccccCCCceeccCCCceEEeCCCCCCCccEE----EEcc--CCC--CCcc-------cCC
Q psy14896        555 SII----SESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNY----YWAR--DYF--PNFV-------EED  615 (813)
Q Consensus       555 ~~~----s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v----~W~k--~~~--~~~~-------~~~  615 (813)
                      ...    ...+.|.|..+|.+...+....+.+|+.++|.|.+ .+.|.+.+    +|+|  +|.  .+..       ...
T Consensus       314 ~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~G~~v~l~C~~-~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~  392 (585)
T 2ocw_A          314 QLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPY-NRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYE  392 (585)
T ss_pred             CccccCceeeEEEEEecccccccCCcceEEEeCCcEEEEEec-CCCCCccEEEEEEEEccCCCCCceeeeecceeecccC
Confidence            432    15678888888887776667778899999999999 78898877    8999  876  3211       123


Q ss_pred             CeEEEe---eCcc--EEEEeecccCCeeEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeE
Q psy14896        616 KRVFVS---YDGA--LYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKV  690 (813)
Q Consensus       616 ~~~~~~---~~~~--L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v  690 (813)
                      .++.+.   .+|+  |.|.+++.+|+|.|+|.| |..|..   ...+.|.|...|.....        +....+.+|+++
T Consensus       393 ~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~---~~~~~l~V~~~~p~~~~--------~~~~~v~~G~~v  460 (585)
T 2ocw_A          393 GRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLW---RTTVEIKIIEGEPNLKV--------PGNVTAVLGETL  460 (585)
T ss_pred             CCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCcc---ceeEEEEEecCcccccc--------CCceeEecCCcE
Confidence            455554   3455  999999999999999999 887654   33477888765433221        223678999999


Q ss_pred             EEEEEec----CCCCCeEEEEeCCcccCCCce-------ee----ecceEEEECCCCCCCCEEEEEEEEcCCCceEE-EE
Q psy14896        691 RLECVAF----GYPVPSYNWTRRGSPLPRNAY-------FE----NFNRILTIPNVKVEDQGEYICRASNDRSALES-SV  754 (813)
Q Consensus       691 ~l~C~~~----g~P~p~i~W~k~g~~l~~~~~-------~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~-~~  754 (813)
                      +|.|.+.    |.|.|.|+|+|+|..+.....       ..    .....|+|.+++.+|+|.|+|.|.|..|...+ .+
T Consensus       461 ~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~  540 (585)
T 2ocw_A          461 KVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAV  540 (585)
T ss_pred             EEEEEecCCCCCCccEEEEEeecCceeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCCCccEEEEE
Confidence            9999997    778899999999988754321       11    12368999999999999999999999997664 49


Q ss_pred             EEEEEcCCcc
Q psy14896        755 TISIQAEPNF  764 (813)
Q Consensus       755 ~l~V~~~P~~  764 (813)
                      .|.|..+|..
T Consensus       541 ~l~V~~~p~~  550 (585)
T 2ocw_A          541 YVAVEERKAA  550 (585)
T ss_pred             EEEEEeeeec
Confidence            9999998853

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=100.00  E-value=3.4e-49  Score=437.08  Aligned_cols=438  Identities=14%  Similarity=0.157  Sum_probs=282.4

Q ss_pred             CceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEe
Q psy14896        197 TDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKA  276 (813)
Q Consensus       197 ~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a  276 (813)
                      ..+.|.+|     ++++|.|.+.+.|...+.|++++..+....  .+  ..+.+..   -+|.|.+. +.+|+|.|+|.|
T Consensus        56 ~~~~v~~g-----~~~~L~c~~~~~~~~~~~W~~~~~~l~~~~--~~--~~~~r~~---~SL~I~~v-~~~D~G~Y~C~~  122 (527)
T 3qs9_E           56 AAVEVDVS-----ASITLQVLVDAPGNISCLWVFKHSSLNCQP--HF--DLQNRGV---VSMVILKM-TETQAGEYLLFI  122 (527)
T ss_dssp             CEEEECSS-----CCEEEEEECSCCSSCEEEEEETTEEECCCC--BC-------CE---EEEEESSC-CSSSCSEEEEEE
T ss_pred             eeEEEecc-----ccEEEEEEEecCCceeEEEEecCCccCccc--cc--CCCcceE---EEEEECcC-ChhhCeeEEEEE
Confidence            35777676     779999999998889999999997653211  11  1111111   14788875 899999999999


Q ss_pred             ecCceeeEeeeeEEeeeeecccccC-CCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCccEEEccCc--cE
Q psy14896        277 SNKFGSIISESVQLAFGFIGEFNLK-RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDG--AL  353 (813)
Q Consensus       277 ~n~~g~~~s~~~~l~v~~~~~~~~~-~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~--~L  353 (813)
                      .|..|.. +..+.|.|.  +.+... ..+.....+...+|.|.+ .|+|.|.|+|++++.++..     ......+  ..
T Consensus       123 ~n~~~~~-~~~~~v~v~--~~~~~~~~~p~~~~~~~~~~L~C~a-~G~P~P~i~W~~~~~~~~~-----~~~~~~~~~~~  193 (527)
T 3qs9_E          123 QSEATNY-TILFTVSIR--NTLLYTLRRPYFRKMENQDALVCIS-ESVPEPIVEWVLCDSQGES-----CKEESPAVVKK  193 (527)
T ss_dssp             EC--CEE-EEEEEEEEC-------CEEEEEEEECSSSSCEEEEE-EESSCCEEEEEEC------------------CEEE
T ss_pred             EeccccE-EEEEEEEEC--CceeeccCCCcEEecCCceEEEEEE-ceecCCeEEEEECCCCCcc-----ccccCCcEEEE
Confidence            9998865 334444443  332222 233344567777999995 7899999999998875321     0111111  12


Q ss_pred             EEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEEEEe-ecCCCeee
Q psy14896        354 YFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF-GYPVPSYN  432 (813)
Q Consensus       354 ~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~~-g~p~p~i~  432 (813)
                      ....+..+|+|.|+|.|.|..|....  ..+.|.|...|.+          +.....+.+|+.+.|.|.+. |.|.|.|+
T Consensus       194 ~~~~~~~~d~G~Y~C~A~N~~G~~~~--~~~~l~V~~~p~~----------~p~~~~v~~G~~v~L~C~~~~g~p~p~i~  261 (527)
T 3qs9_E          194 EEKVLHELFGTDIRCCARNELGRECT--RLFTIDLNQTPQT----------TLPQLFLKVGEPLWIRCKAVHVNHGFGLT  261 (527)
T ss_dssp             CCSEECCCCSSCEEEEEECSSCEEEE--ECEEEESSSCCCC----------SCCEEEECTTSCEEEEEEEEESSSCCCEE
T ss_pred             eeeeccccCCEEEEEEEEeCCCcccc--eEEEEEEeccCcc----------CCCceEEeCCCeEEEEEEEccCCCCeEEE
Confidence            23345689999999999999886433  2467777655432          11245788999999999996 88999999


Q ss_pred             EeecCCcCCCCceeccccceEEEcccccccceEEeCCCceEecccccccccCeEEEEEeeccCCCcEEEeecccccccee
Q psy14896        433 WTRRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLV  512 (813)
Q Consensus       433 W~~~~~~l~~~~~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~  512 (813)
                      |++++..+.....+..                                                   .-+.         
T Consensus       262 W~k~g~~l~~~~~~~~---------------------------------------------------~~~~---------  281 (527)
T 3qs9_E          262 WELENKALEEGNYFEM---------------------------------------------------STYS---------  281 (527)
T ss_dssp             EECSSSCCCGGGEEEE---------------------------------------------------EEEE---------
T ss_pred             EEECCEECCCCceeee---------------------------------------------------eeec---------
Confidence            9999887754321110                                                   0000         


Q ss_pred             ccccCCCCCceEEeeCCeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEEeecccccccC--CCceeccCCCceEEe
Q psy14896        513 ANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKR--APEIGNQNWGKAMFC  590 (813)
Q Consensus       513 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~p~~~~~~--~~~~~~~g~~~~l~C  590 (813)
                              ..+.....++|.|.++ ..+|+|.|+|.|.|.    .+..+.|.|..+|.+....  ....+.+|+.+.|.|
T Consensus       282 --------~~~~~~~~~~L~I~~v-~~~DsG~Y~C~a~N~----~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C  348 (527)
T 3qs9_E          282 --------TNRTMIRILFAFVSSV-ARNDTGYYTCSSSKH----PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSV  348 (527)
T ss_dssp             --------TTTEEEEEEEEEESSC-CGGGCEEEEEEETTE----EEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEE
T ss_pred             --------cCcceeeEEEEEEccC-CcccCeEEEEEEEeC----CCceEEEEEEccCccccccCcccEEEcCCCeEEEEE
Confidence                    1112234457999997 999999999999998    3455788887777554432  234567899999999


Q ss_pred             CCCCCCCccEEEEccCCCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEEEEeeecCccccCceeeEEEccCCCcccc
Q psy14896        591 DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQL  670 (813)
Q Consensus       591 ~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~  670 (813)
                      .+ .|+|.|.|+|+|+|.++.  ...+. ...+++|.|.++..+|+|.|+|.|.|..|....   .+.|.|..+|.+...
T Consensus       349 ~~-~g~P~p~i~W~k~g~~l~--~~~~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~---~~~L~V~~~P~i~~~  421 (527)
T 3qs9_E          349 RF-KAYPQIRCTWTFSRKSFP--CEQKG-LDNGYSISKFCNHKHQPGEYIFHAENDDAQFTK---MFTLNIRRKPQVLAE  421 (527)
T ss_dssp             EE-EEESCCEEEEEETTEEEE--CBCCB-CSSSSEEEEECCCTTCCSCEEEEEEETTEEEEE---EEEEC--CCCEEEEC
T ss_pred             EE-EecCCCEEEEEECCEECc--CCccc-ccCCcEEEEecCCcccCEEEEEEEEeCCCcEEE---EEEEEEecCCeEEEe
Confidence            99 899999999999997642  22221 224567999999999999999999999986544   478889888865431


Q ss_pred             ccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCc---------------eeeecceEEEECCCCCCC
Q psy14896        671 KFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA---------------YFENFNRILTIPNVKVED  735 (813)
Q Consensus       671 ~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~---------------~~~~~~~~L~i~~v~~~d  735 (813)
                                    ..|  .+|.|.+.|.|.|.|+|++++..+....               ........++|.-...+|
T Consensus       422 --------------~~~--~~l~C~a~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~d  485 (527)
T 3qs9_E          422 --------------ASA--SQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIK  485 (527)
T ss_dssp             --------------CCC--E---EEEECSSCCEEEEECCC-----CCCCCCCCEEEC---------CEEEEECCCCCSSC
T ss_pred             --------------CCC--CEEEEEEEEEcCCeEEEEECCCCcCCCccccccccceeccccccCCceEEEEEEEEEEcCC
Confidence                          012  3589999999999999999876542110               001111223333334569


Q ss_pred             CEEEEEEEEcCCCceEEEEEEEEEcCCcc
Q psy14896        736 QGEYICRASNDRSALESSVTISIQAEPNF  764 (813)
Q Consensus       736 ~G~Y~C~a~N~~G~~~~~~~l~V~~~P~~  764 (813)
                      +|.|+|.|.|.+|..+..+.|.|.++-.+
T Consensus       486 ~G~Y~C~A~N~~G~~~~~~~L~V~~p~~~  514 (527)
T 3qs9_E          486 GFLVKCCAYNSLGTSCETILLNSPGPFPF  514 (527)
T ss_dssp             SCEEEEEEECSSCEEEEEEEC--------
T ss_pred             CEEEEEEEEeCCCCceeEEEEecCCCcee
Confidence            99999999999999999999998776444

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=9.2e-49  Score=430.76  Aligned_cols=429  Identities=14%  Similarity=0.158  Sum_probs=295.2

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccCCCCeE-----EEeecccccccccccccccCCCccEEeeCCeEEEcCCccc
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSY-----EWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQV  266 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v-----~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  266 (813)
                      |...|.+..+.+|     ++++|.|.+.| |.|.+     .|+|++..+.           +.++    ++|.|.+. +.
T Consensus         2 i~~~P~~~~v~~G-----~~v~L~C~~~g-p~p~~~~~~~~w~k~~~~~~-----------~~~~----~~l~i~~v-~~   59 (450)
T 1z7z_I            2 TSVSPSKVILPRG-----GSVLVTCSTSC-DQPMLLGIETPLPKKELLLP-----------GNNR----KVYELSNV-QE   59 (450)
T ss_dssp             CEEESSEEEEETT-----EEEEEEEECCS-SCCCEEEECSSSCEEECCSS-----------TTTE----EEEEEEEE-CS
T ss_pred             cccCCCceEEecC-----CcEEEEEEccC-CCcccccccceeeecceEec-----------CCCc----eEEEEEec-cc
Confidence            4566788888777     77999999999 99999     9999986431           1122    26777764 55


Q ss_pred             cCCeeEEEEeecCceeeEeeeeEEeeeeecccc-cCCCCceeecCCCeEEEecCCCCCCcc---eEEEeeccccccccCC
Q psy14896        267 EDRGSYHCKASNKFGSIISESVQLAFGFIGEFN-LKRAPEIGNQNWGKAMFCDPPTNYPGV---NYYWARDYFPNFVEED  342 (813)
Q Consensus       267 ~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~-~~~~~~~~~~~~~~~l~C~~~~~~p~~---~v~W~k~~~~~~~~~~  342 (813)
                       |+| |+|.|.|..+.. +..+.|.|..+|.+. ..+.+..+.+|+.++|.|.+ .+.|++   .|+|+|||.++.... 
T Consensus        60 -d~g-Y~C~a~~~~~~~-~~~~~l~V~~~P~~~~~~~~~~~v~~G~~v~L~C~~-~g~~~~~~~~v~W~k~g~~l~~~~-  134 (450)
T 1z7z_I           60 -DSQ-PMCYSNCPDGQS-TAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQV-EGGAPRANLTVVLLRGEKELKREP-  134 (450)
T ss_dssp             -CBC-CEEEEEETTEEE-EEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEE-ECCBCGGGEEEEEEETTEEEEEEE-
T ss_pred             -CCe-eEEEEeCCCCcc-eeEEEEEEEeCCCcceecCCCceEeeCCeEEEEEEe-cCCCCCcCcEEEEeeCCEEeeccc-
Confidence             999 999998765554 778888888777655 45566788999999999996 455665   999999998753222 


Q ss_pred             ccEEEccCccEEEeeeeecCCeeeEEEEeeeccccCCC-----CCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcE
Q psy14896        343 KRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRN-----GPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKV  417 (813)
Q Consensus       343 ~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~-----s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~  417 (813)
                       ......+++|.|.++..+|+|.|+|.|.|..|.....     +....|.|...+.    ..|..   ..+..+.+|+.+
T Consensus       135 -~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~----~~p~~---~~~~~v~~G~~v  206 (450)
T 1z7z_I          135 -AVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPA----TPPQL---VSPRVLEVDTQG  206 (450)
T ss_dssp             -CCTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCS----SCCEE---ECCSEEETTSEE
T ss_pred             -ccccccceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCC----CCCEe---cCceeEEeCCcE
Confidence             1112224589999999999999999999998754321     1234444443211    01111   111457778888


Q ss_pred             EEEEEEeec-C--CCeeeEeecCCcCCCCceeccccceEEEcccccccceEEeCCCceEecccccccccCeEEEEEeecc
Q psy14896        418 RLECVAFGY-P--VPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGY  494 (813)
Q Consensus       418 ~l~C~~~g~-p--~p~i~W~~~~~~l~~~~~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~  494 (813)
                      .|.|.+.|. |  .+.+.|++++..+..                                                    
T Consensus       207 ~l~C~~~g~~P~~~~~~~W~~~~~~~~~----------------------------------------------------  234 (450)
T 1z7z_I          207 TVVCSLDGLFPVSEAQVHLALGDQRLNP----------------------------------------------------  234 (450)
T ss_dssp             EEEEEEESCTTGGGCEEEEEETTEECCC----------------------------------------------------
T ss_pred             EEEEEeeCCCCCCceEEEEeCCCEeCCc----------------------------------------------------
Confidence            888888777 6  567777777766532                                                    


Q ss_pred             CCCcEEEeeccccccceeccccCCCCCceEEeeCCeEEEeCCCCCCCCc--eEEEEEEcCceeEEeecEEEEEeeccccc
Q psy14896        495 PNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG--SYHCKASNKFGSIISESVQLAFGFIGEFN  572 (813)
Q Consensus       495 p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G--~Y~C~a~n~~g~~~s~~~~l~v~~~p~~~  572 (813)
                         .+.|..++.                     ...+.+ ++ ..+|+|  .|+|.|.|..|.... .+.|.|...+.+.
T Consensus       235 ---~~~~~~~~~---------------------~~~~~~-~v-~~~d~G~~~Y~C~a~n~~g~~~~-~~~l~V~~~~~p~  287 (450)
T 1z7z_I          235 ---TVTYGNDSF---------------------SAKASV-SV-TAEDEGTQRLTCAVILGNQSQET-LQTVTIYSFPAPN  287 (450)
T ss_dssp             ---EEEEETTEE---------------------EEEEEE-EC-CGGGCEEEEEEEEEEETTEEEEE-EEEEEEECCCCCE
T ss_pred             ---eEEecCCce---------------------eEEEEE-Ee-EhhhCCcEEEEEEEccCCccEEE-EEEEEEecCCCCe
Confidence               112211110                     001222 44 789999  999999999888644 4677777644444


Q ss_pred             ccCCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEEEEeeecC-cc
Q psy14896        573 LKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSD-TG  651 (813)
Q Consensus       573 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~  651 (813)
                      +...+..+.+|+.++|.|.+ .  |.+.++|  +|.++..       .....+|.|.++..+|+|.|+|.|.|..+. ..
T Consensus       288 i~~~~~~v~~G~~v~l~C~~-~--p~p~i~W--~g~~~~~-------~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~  355 (450)
T 1z7z_I          288 VILTKPEVSEGTEVTVKCEA-H--PRAKVTL--NGVPAQP-------LGPRAQLLLKATPEDNGRSFSCSATLEVAGQLI  355 (450)
T ss_dssp             EEESCSEEETTCEEEEEEEC----------------------------CCCCCEEEECCGGGTTCEEEEEEEEEETTEEE
T ss_pred             EecCCeeEeCCCcEEEEEec-C--CCCEeEE--CCEEcCC-------CCceEEEEEecCcccCCceEEEEEEcCCCCccc
Confidence            44445678899999999998 3  8899999  7765311       112347999999999999999999987753 22


Q ss_pred             ccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCC
Q psy14896        652 RNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNV  731 (813)
Q Consensus       652 ~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v  731 (813)
                      .....+.|.|.++|.+.....      +....+.+|++++|.|.+.|+|.|.|+|+|+|..+..+      +..|   ++
T Consensus       356 ~~~~~~~l~V~~~P~~~~~~~------p~~~~~~~g~~~~l~C~~~g~P~p~i~W~~~g~~~~~~------g~~~---~v  420 (450)
T 1z7z_I          356 HKNQTRELRVLYGPRLDERDC------PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI------GESV---TV  420 (450)
T ss_dssp             EEEEEEECEEEEEEECCSTTS------CSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCT------TSCE---EC
T ss_pred             ccceeEEEEEecCCceeeccC------CCceeEcCCCeEEEEEecccCCCCcEEEEECCcccCCC------CCeE---eE
Confidence            233457888888886654311      12356789999999999999999999999999854332      2233   57


Q ss_pred             CCCCCEEEEEEEEcCCCceEEEEEEEEEcC
Q psy14896        732 KVEDQGEYICRASNDRSALESSVTISIQAE  761 (813)
Q Consensus       732 ~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~  761 (813)
                      +.+|+|.|+|.|.|.+|..+.++.|.|+.|
T Consensus       421 ~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~  450 (450)
T 1z7z_I          421 TRDLEGTYLCRARSTQGEVTREVTVNVLSP  450 (450)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             ehhhCeEEEEEEEeCCCceeEEEEEEEEcC
Confidence            889999999999999999999999999864

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=100.00  E-value=4.4e-48  Score=414.83  Aligned_cols=377  Identities=28%  Similarity=0.511  Sum_probs=274.8

Q ss_pred             CCCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCcccc
Q psy14896        188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE  267 (813)
Q Consensus       188 ~~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~  267 (813)
                      .+|.|+.+|.+..+..+  .+|+++.|.|.+.|+|.|+|+|+|||.++.        ...+.++...+|+|+|.+.++.+
T Consensus         4 ~~P~f~~~P~~~~~~~~--~eg~~v~L~C~~~g~P~p~i~W~k~g~~l~--------~~~~~~~~~~~g~l~i~~~~~~~   73 (384)
T 3kld_A            4 SGPVFVQEPSHVMFPLD--SEEKKVKLSCEVKGNPKPHIRWKLNGTDVD--------IGMDFRYSVVDGSLLINNPNKTQ   73 (384)
T ss_dssp             EEEEEEECCCCEEEETT--CSCSEEEECCEEEEESCCEEEEEETTEECC--------C----CEEEETTEEEEESCCHHH
T ss_pred             CCCEEEeCCcceEeecC--CCCCeEEEEeEecCCCCCEEEEEECCEECc--------CCCCccEEEECCEEEEcCCCCcc
Confidence            36899999999988655  357899999999999999999999998763        23455677789999999876789


Q ss_pred             CCeeEEEEeecCceeeEeeeeEEeeeeecccccCC-CCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCccEE
Q psy14896        268 DRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKR-APEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVF  346 (813)
Q Consensus       268 d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~-~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~  346 (813)
                      |+|.|+|.|.|..|...+..+.|.+.+.+.+.... ....+.+|+.+.|.|.+..+.|.+.+.|++++.++. ....++.
T Consensus        74 D~G~Y~C~A~N~~G~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~-~~~~~~~  152 (384)
T 3kld_A           74 DAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSY-QDNRRFV  152 (384)
T ss_dssp             HCEEEEEEEEETTEEEECCCEEEEEEEECCCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECC-CSSSEEE
T ss_pred             cCEEEEEEEEcCcccEEecceEEEEecccccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCE-eeccEEE
Confidence            99999999999999987888999998887766543 446788999999999876677889999999998753 3334444


Q ss_pred             EccCccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEEEEeec
Q psy14896        347 VSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGY  426 (813)
Q Consensus       347 ~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~~g~  426 (813)
                      ...++.|.|.++..+|+|.|+|.|.|..+.....+....+.+..........+...........+.+|+.+.|.|.+.|+
T Consensus       153 ~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~  232 (384)
T 3kld_A          153 SQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGN  232 (384)
T ss_dssp             CTTTCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEE
T ss_pred             EcCCCcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeec
Confidence            55677999999999999999999999876543222223333321100000000000000011234455555555555555


Q ss_pred             CCCeeeEeecCC-cCCCCceeccccceEEEcccccccceEEeCCCceEecccccccccCeEEEEEeeccCCCcEEEeecc
Q psy14896        427 PVPSYNWTRRGS-PLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKED  505 (813)
Q Consensus       427 p~p~i~W~~~~~-~l~~~~~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~~  505 (813)
                      |.|.+.|++++. ++..                                                               
T Consensus       233 P~p~i~W~k~~~~~~~~---------------------------------------------------------------  249 (384)
T 3kld_A          233 PVPTILWRRADGKPIAR---------------------------------------------------------------  249 (384)
T ss_dssp             SCCEEEEEETTCCCCCT---------------------------------------------------------------
T ss_pred             CCCcEEEEeCCCccccc---------------------------------------------------------------
Confidence            555555555322 2211                                                               


Q ss_pred             ccccceeccccCCCCCceEEeeCCeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEEeecccccccCCCceeccCCC
Q psy14896        506 YVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWG  585 (813)
Q Consensus       506 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~  585 (813)
                                     ..+....++.|.|.++ ..+|+|.|+|.|.|..|.... ...|.|..+|.+........+..|+.
T Consensus       250 ---------------~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~N~~G~~~~-~~~l~v~~~P~~~~~~~~~~v~~g~~  312 (384)
T 3kld_A          250 ---------------KARRHKSNGILEIPNF-QQEDAGSYECVAENSRGKNVA-KGQLTFYAQPNWVQIINDIHVAMEES  312 (384)
T ss_dssp             ---------------TCEECTTSCEEEECSC-CGGGCEEEEEEEEETTEEEEE-EEEEEEEEEEEEEECCCCEEECTTCC
T ss_pred             ---------------cceecCCCcEEEECCC-ChhhCEEEEEEEEcCCCeEEE-EEEEEEecCCccccCCCceEecCCCC
Confidence                           1112223568999997 999999999999999998744 47888888888877777788899999


Q ss_pred             ceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEEEEeeecCccccCceeeEEEc
Q psy14896        586 KAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF  662 (813)
Q Consensus       586 ~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~  662 (813)
                      +.|.|.+ .|.|.|.|+|+|+|.++  ....++.+ .+++|.|.++..+|+|.|+|.|.|..|....+   +.|.|.
T Consensus       313 v~l~C~~-~g~P~p~i~W~k~g~~l--~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~---a~L~V~  382 (384)
T 3kld_A          313 VFWECKA-NGRPKPTYRWLKNGDPL--LTRDRIQI-EQGTLNITIVNLSDAGMYQCVAENKHGVIFSS---AELSVI  382 (384)
T ss_dssp             EEEECEE-EEESCCEEEEEETTEEC--CCBTTEEE-ETTEEEESSCCGGGCEEEEEEEEETTEEEEEE---EEEEEC
T ss_pred             EEEEeEC-CccCCCeEEEEECCEEC--CCCccEEE-eCCEEEEeecChhhCEEEEEEEEeCCceEEec---eEEEEe
Confidence            9999999 79999999999999864  33445554 56799999999999999999999999876543   566664

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=100.00  E-value=3e-47  Score=427.11  Aligned_cols=406  Identities=15%  Similarity=0.216  Sum_probs=297.6

Q ss_pred             eecCceeeEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCccEEEccCccEEE
Q psy14896        276 ASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYF  355 (813)
Q Consensus       276 a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i  355 (813)
                      +.+..|.. ...+.|.|..+|.+........+.+|+.++|.|.+. +    .+.|+|++.++      . .....++|.|
T Consensus        18 ~~~~~g~~-~~~i~l~v~~pP~i~~~~~~~~v~~G~~v~l~C~~~-~----~v~W~~~~~~~------~-~~~~~~~L~I   84 (524)
T 2ec8_A           18 LRVQTGSS-QPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDP-G----FVKWTFEILDE------T-NENKQNEWIT   84 (524)
T ss_dssp             C---------------CCCCCEEESCCSEEECCTTSCEEEEEECT-T----EEEEEEESSSC------C-EEECSSEEEE
T ss_pred             hhhhcCCC-CCeEEcCCCCCCccCCCCceEEEeCCCeEEEEEeCC-c----eEEEcCCCccc------c-ccCccceEEE
Confidence            34445543 456778888888777666677889999999999964 3    99999999875      1 3345678999


Q ss_pred             eeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEEEEeecCCCeeeEee
Q psy14896        356 SALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTR  435 (813)
Q Consensus       356 ~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~  435 (813)
                      .+++.+|+|.|+|.|.|  |.    +..+.|.|..++...        .......+.+|+.+.|.|.+.+.|.+.|.|++
T Consensus        85 ~~~~~~D~G~Y~C~a~n--g~----~~~~~l~V~~p~~~~--------~~~~~~~v~~G~~v~l~C~~~~~~~~~v~W~~  150 (524)
T 2ec8_A           85 EKAEATNTGKYTCTNKH--GL----SNSIYVFVRDPAKLF--------LVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKG  150 (524)
T ss_dssp             SSCCSTTCEEEEEEETT--SC----EEEEEEECCCSSCSB--------CCCCCCCEETTSCEEECCCBSCCCCSCEEEEC
T ss_pred             cccchhhCEEEEEeecC--Cc----ceEEEEEECCCCccc--------ccccceEEEcCCeEEEECcCCCCccceEEEEc
Confidence            99999999999999998  32    344677776544322        11223567889999999988876667888877


Q ss_pred             -cCCcCCCCceeccccceEEEcccccccceEEeCCCceEecccccccccCeEEEEEeeccCCCcEEEeeccccccceecc
Q psy14896        436 -RGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVAN  514 (813)
Q Consensus       436 -~~~~l~~~~~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~~~  514 (813)
                       ++..+...                                                                       
T Consensus       151 ~~g~~l~~~-----------------------------------------------------------------------  159 (524)
T 2ec8_A          151 CQGKPLPKD-----------------------------------------------------------------------  159 (524)
T ss_dssp             SSSCCCCSS-----------------------------------------------------------------------
T ss_pred             cCCcCcCCC-----------------------------------------------------------------------
Confidence             55555322                                                                       


Q ss_pred             ccCCCCCceEEe-eCCeEEEeCCCCCCCCc-eEEEEEEcCceeEEeecEEEEEe----ecccccccCCCceeccCCCceE
Q psy14896        515 LIDPLSDKRFTL-SGGNLIINDPRQVEDRG-SYHCKASNKFGSIISESVQLAFG----FIGEFNLKRAPEIGNQNWGKAM  588 (813)
Q Consensus       515 ~~~~~~~~~~~~-~~~~l~i~~~~~~~d~G-~Y~C~a~n~~g~~~s~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l  588 (813)
                             .++.. .++.|.|.++ ..+|+| .|+|.|.|..|...+..+.|.|.    .+|.+........+.+|+.++|
T Consensus       160 -------~~~~~~~~~~L~i~~~-~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L  231 (524)
T 2ec8_A          160 -------LRFIPDPKAGIMIKSV-KRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTV  231 (524)
T ss_dssp             -------CEEEEETTTEEEEESC-CGGGTTCEEEEEEC----CCCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEE
T ss_pred             -------CceeECCCccEEEecc-chhhCCceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEE
Confidence                   11211 2457999997 999999 99999999877765656788876    5666666666667889999999


Q ss_pred             EeCCCCCCCccE-EEEccCCCCCcccCCCeEE------EeeCccEEEEeecccCCeeEEEEEEeeecCccccCceeeEEE
Q psy14896        589 FCDPPTNYPGVN-YYWARDYFPNFVEEDKRVF------VSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKV  661 (813)
Q Consensus       589 ~C~~~~~~p~~~-v~W~k~~~~~~~~~~~~~~------~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v  661 (813)
                      .|.+ .+.|.+. |+|+|++..+.+....+..      ...+++|.|.++..+|+|.|+|.|.|..|....   .+.|.|
T Consensus       232 ~C~~-~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~---~~~l~V  307 (524)
T 2ec8_A          232 TCTI-KDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANV---TTTLEV  307 (524)
T ss_dssp             EEEE-EESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEE---EEEEEE
T ss_pred             EEEE-ecCCCcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEE---EEEEEE
Confidence            9999 5878776 9999999763222222222      233467999999999999999999998876543   578899


Q ss_pred             ccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCe-EEEEeCCcccCCCc-eee-e-------cceEEEECCC
Q psy14896        662 FPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPS-YNWTRRGSPLPRNA-YFE-N-------FNRILTIPNV  731 (813)
Q Consensus       662 ~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~-i~W~k~g~~l~~~~-~~~-~-------~~~~L~i~~v  731 (813)
                      ..+|.+.....     ......+.+|+.++|.|.+.|.|.|. |+|+|+|.++.... ++. .       ...+|.|.++
T Consensus       308 ~~~p~~~~~~~-----~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v  382 (524)
T 2ec8_A          308 VDKGFINIFPM-----INTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRL  382 (524)
T ss_dssp             ESSCEEEEEES-----SCSEEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSC
T ss_pred             eccCceEeecC-----CCceEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeec
Confidence            88876544211     12236789999999999999999999 99999999987664 221 1       2468999999


Q ss_pred             CCCCCEEEEEEEEcCCCceEEEEEEEEEcCCcccccCCceeecCCCeEEEEEEEcccCCceEEEEECCEec
Q psy14896        732 KVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELG  802 (813)
Q Consensus       732 ~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~g~~l  802 (813)
                      +.+|+|.|+|.|.|..|..+.++.|.|..+|.|...+.   +.+|   +|.|.+.|.|+|+|+|+|||..+
T Consensus       383 ~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~i~~~~~---~~~g---~l~C~~~g~P~p~i~W~~~~~~~  447 (524)
T 2ec8_A          383 KGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYDR---LVNG---MLQCVAAGFPEPTIDWYFCPGTE  447 (524)
T ss_dssp             CGGGCEEEEEEEECSSCEEEEEEEEEECEEEEEEEEEC---CSSS---CEEEEEEEESCCEEECCCC----
T ss_pred             CcccCeEEEEEEEecCceEEEEEEEEEecCCeEeeccc---CcCc---EEEEEEEeecCCEEEEEECCCcc
Confidence            99999999999999999999999999999999876554   3456   99999999999999999998776

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=100.00  E-value=1.2e-45  Score=413.87  Aligned_cols=455  Identities=17%  Similarity=0.237  Sum_probs=285.9

Q ss_pred             eCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecc--cccccccc--cccccCCCccEEee----CCeEEEcCCcc
Q psy14896        194 KQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKED--YVQDRLVA--NLIDPLSDKRFTLS----GGNLIINDPRQ  265 (813)
Q Consensus       194 ~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g--~~l~~~~~--~~~~~~~~~~~~~~----~~~l~i~~~~~  265 (813)
                      .+|..+.+.+|     ++++|.|.+.+.|.+.|.|||++  ..+.....  .........|+...    ..+|.|.+. +
T Consensus         5 ~~p~~~~v~~G-----~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v-~   78 (523)
T 2rcj_C            5 TQPPSASGTPG-----QRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGL-E   78 (523)
T ss_pred             ccCCceEEecC-----CcEEEEEEEeccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCC-C
Confidence            34666777777     77999999999999999999985  22210000  00011123455432    236888885 8


Q ss_pred             ccCCeeEEEEeecCceee--EeeeeEEeee----eecccccCCCCceeecCCCeEEEecCCCCCCc-ceEEEeecccccc
Q psy14896        266 VEDRGSYHCKASNKFGSI--ISESVQLAFG----FIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPG-VNYYWARDYFPNF  338 (813)
Q Consensus       266 ~~d~G~Y~C~a~n~~g~~--~s~~~~l~v~----~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~-~~v~W~k~~~~~~  338 (813)
                      .+|+|.|+|.|.|..|..  .+..+.|.|.    .+|.+.+........+|+.++|.|.+.+..|+ ++++|+|||+++.
T Consensus        79 ~~D~G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~  158 (523)
T 2rcj_C           79 AEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVK  158 (523)
T ss_pred             hhhCEEEEEEEccCCCccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCC
Confidence            999999999999987642  2345677773    33444444455556678889999997544343 4999999998753


Q ss_pred             ccCCccEE---EccCc------cEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCcccccccCCCCCCCCCc
Q psy14896        339 VEEDKRVF---VSYDG------ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPE  409 (813)
Q Consensus       339 ~~~~~~~~---~~~~~------~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~  409 (813)
                      ..  .+..   ...++      .|.|.++..+|+|.|+|.|.|..+.....   +.+.+....    ...|.........
T Consensus       159 ~~--~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~---~~~~~~~~~----~~~P~v~~~~~~~  229 (523)
T 2rcj_C          159 AG--VETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKT---VAPTECSAS----TKGPSVFPLAPSS  229 (523)
T ss_pred             Cc--eEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccc---eeeeecCCC----CcCCEEEecCCCc
Confidence            22  1111   11222      59999999999999999999987643222   222211100    0111111111123


Q ss_pred             CCCCCCcEEEEEEEeec-CCC-eeeEeecCCcCCCCceeccccceEEEcccccccceEEeCCCceEecccccccccCeEE
Q psy14896        410 APKAGDKVRLECVAFGY-PVP-SYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITL  487 (813)
Q Consensus       410 ~v~~g~~~~l~C~~~g~-p~p-~i~W~~~~~~l~~~~~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l  487 (813)
                      .+.+|+.+.|.|.+.|. |.| .|+|++++..+.....                                          
T Consensus       230 ~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~------------------------------------------  267 (523)
T 2rcj_C          230 KSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTF------------------------------------------  267 (523)
T ss_pred             ccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeC------------------------------------------
Confidence            46788888888888775 767 7888887766421100                                          


Q ss_pred             EEEeeccCCCcEEEeeccccccceeccccCCCCCceEEeeCCeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEEee
Q psy14896        488 SCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGF  567 (813)
Q Consensus       488 ~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~  567 (813)
                               +.+                 . .....+ ...+.|.|.++ ..+| |.|+|.|.|..|... ..+.|.+..
T Consensus       268 ---------~~~-----------------~-~~~g~~-~~~s~L~i~~~-~~~d-G~Y~C~a~n~~g~~~-~~~~l~v~~  316 (523)
T 2rcj_C          268 ---------PAV-----------------L-QSSGLY-SLSSVVTVPSS-SLGT-QTYICNVNHKPSNTK-VDKRVEPLS  316 (523)
T ss_pred             ---------CcE-----------------e-cCCCcE-EEEEEEEechh-hcCC-ceEEEEEEeCCCCcc-eEEecCCCc
Confidence                     000                 0 001111 12357889886 8889 999999999998753 234555544


Q ss_pred             cccccc-cCCCce-eccCCCceEEeCCCCCCCc----cEEEEccCCCCCcccCCCeEEEeeCc------cEEEEeecccC
Q psy14896        568 IGEFNL-KRAPEI-GNQNWGKAMFCDPPTNYPG----VNYYWARDYFPNFVEEDKRVFVSYDG------ALYFSALEQID  635 (813)
Q Consensus       568 ~p~~~~-~~~~~~-~~~g~~~~l~C~~~~~~p~----~~v~W~k~~~~~~~~~~~~~~~~~~~------~L~i~~~~~~d  635 (813)
                      .|.+.+ .+.... +.+|+.++|.|.+ .|.|+    +.|+|+|+|.++............+|      .|.|.++..+|
T Consensus       317 ~P~~~~~~p~~~~~v~~g~~~~l~C~~-~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d  395 (523)
T 2rcj_C          317 LPSVFLFPPKPKDTLMISRTPEVTCVV-VDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLD  395 (523)
T ss_pred             CceEEecCCCchhhcccCCceEEEEEE-ecccCCCCceEEEEEECCeEccCCccCCceecCCCcEEEEEEEEECHHHhcC
Confidence            454322 222233 6789999999999 55432    69999999987533322222222333      48888899999


Q ss_pred             CeeEEEEEEeeecCccccCceeeEE----EccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCC--eEEEEeC
Q psy14896        636 AGNYSCNVQSKVSDTGRNGPFFPLK----VFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVP--SYNWTRR  709 (813)
Q Consensus       636 ~G~Y~C~a~n~~g~~~~~~~~~~l~----v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p--~i~W~k~  709 (813)
                      +|.|+|.|.|..+.....   ..+.    +..+|.+...  +.     ....+..| .++|.|.+.|.|+|  .|+|+||
T Consensus       396 ~G~Y~C~a~n~~~~~~~~---~~~~~~~~~~~~P~v~~~--~~-----~~~~~~~~-~~~l~C~~~g~~p~~~~v~W~k~  464 (523)
T 2rcj_C          396 GKEYKCKVSNKALPAPIE---KTISKAKGQPREPQVYTL--PP-----SREEMTKN-QVSLTCLVKGFYPSDIAVEWESN  464 (523)
T ss_pred             CCeEEEEEeCCCCCCcee---EEEEcccCCCCCCEEEEe--CC-----ChHHccCC-ceEEEEEEEeeECCCCEEEEEEC
Confidence            999999999987754322   2333    3344443321  11     11223344 49999999998776  9999999


Q ss_pred             CcccCCCcee---eec------ceEEEECCCCCCCCEEEEEEEEcCCC
Q psy14896        710 GSPLPRNAYF---ENF------NRILTIPNVKVEDQGEYICRASNDRS  748 (813)
Q Consensus       710 g~~l~~~~~~---~~~------~~~L~i~~v~~~d~G~Y~C~a~N~~G  748 (813)
                      |.++......   ...      .+.|.|.....+|+|.|+|+|.|..-
T Consensus       465 g~~~~~~~~~~~~~~~~gt~~~~~~l~v~~~~~~~~g~Y~C~a~n~~l  512 (523)
T 2rcj_C          465 GQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL  512 (523)
T ss_pred             CEECCCeeeccceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEcCCc
Confidence            9998743221   111      23467777777899999999999753

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=100.00  E-value=1.9e-46  Score=415.13  Aligned_cols=383  Identities=13%  Similarity=0.112  Sum_probs=259.1

Q ss_pred             CCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCccEEEccCc--cEEEeeeeecCCeeeEEEEeeeccccCC
Q psy14896        302 RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDG--ALYFSALEQIDAGNYSCNVQSKVSDTGR  379 (813)
Q Consensus       302 ~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~--~L~i~~v~~~D~G~Y~C~a~n~~g~~~~  379 (813)
                      ..+..+.+|+.++|.|.+ .+.|...+.|++++..+.  ....+.....+  +|.|.+++.+|+|.|+|.|.|..+....
T Consensus        55 ~~~~~v~~g~~~~L~c~~-~~~~~~~~~W~~~~~~l~--~~~~~~~~~r~~~SL~I~~v~~~D~G~Y~C~~~n~~~~~~~  131 (527)
T 3qs9_E           55 AAAVEVDVSASITLQVLV-DAPGNISCLWVFKHSSLN--CQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTI  131 (527)
T ss_dssp             -CEEEECSSCCEEEEEEC-SCCSSCEEEEEETTEEEC--CCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEEEE
T ss_pred             eeeEEEeccccEEEEEEE-ecCCceeEEEEecCCccC--cccccCCCcceEEEEEECcCChhhCeeEEEEEEeccccEEE
Confidence            336788899999999996 566779999999987532  22222222222  5999999999999999999988764321


Q ss_pred             CCCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEEEEeecCCCeeeEeecCCcCCCCceeccccceEEEcccc
Q psy14896        380 NGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVK  459 (813)
Q Consensus       380 ~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~~~~l~~~~~~~~~~~~l~i~~~~  459 (813)
                         .+.|.|.  +.+....       ..+.....|+.+.|.|.+.|+|.|.|+|++++.++....               
T Consensus       132 ---~~~v~v~--~~~~~~~-------~~p~~~~~~~~~~L~C~a~G~P~P~i~W~~~~~~~~~~~---------------  184 (527)
T 3qs9_E          132 ---LFTVSIR--NTLLYTL-------RRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCK---------------  184 (527)
T ss_dssp             ---EEEEEEC-------CE-------EEEEEEECSSSSCEEEEEEESSCCEEEEEEC-----------------------
T ss_pred             ---EEEEEEC--Cceeecc-------CCCcEEecCCceEEEEEEceecCCeEEEEECCCCCcccc---------------
Confidence               2444443  2111000       001112334445566666666666666655544331100               


Q ss_pred             cccceEEeCCCceEecccccccccCeEEEEEeeccCCCcEEEeeccccccceeccccCCCCCceEEeeCCeEEEeCCCCC
Q psy14896        460 MRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQV  539 (813)
Q Consensus       460 ~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  539 (813)
                                                                                ........     ..... ...
T Consensus       185 ----------------------------------------------------------~~~~~~~~-----~~~~~-~~~  200 (527)
T 3qs9_E          185 ----------------------------------------------------------EESPAVVK-----KEEKV-LHE  200 (527)
T ss_dssp             ---------------------------------------------------------------CEE-----ECCSE-ECC
T ss_pred             ----------------------------------------------------------ccCCcEEE-----Eeeee-ccc
Confidence                                                                      00000000     00111 247


Q ss_pred             CCCceEEEEEEcCceeEEeecEEEEEeecccccccCCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEE
Q psy14896        540 EDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVF  619 (813)
Q Consensus       540 ~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~  619 (813)
                      +|+|.|+|.|.|..|...+..+.|.|..+|.+  .+....+.+|+.++|.|.+..+.|.+.|+|+|++.++...  ..+.
T Consensus       201 ~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~--~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~--~~~~  276 (527)
T 3qs9_E          201 LFGTDIRCCARNELGRECTRLFTIDLNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEG--NYFE  276 (527)
T ss_dssp             CCSSCEEEEEECSSCEEEEECEEEESSSCCCC--SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGG--GEEE
T ss_pred             cCCEEEEEEEEeCCCcccceEEEEEEeccCcc--CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCC--ceee
Confidence            89999999999999998776678888777665  3445677899999999999448999999999999864322  1111


Q ss_pred             ---------EeeCccEEEEeecccCCeeEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeE
Q psy14896        620 ---------VSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKV  690 (813)
Q Consensus       620 ---------~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v  690 (813)
                               ....++|.|.+++.+|+|.|+|.|.|.      ....+.|.|..+|.+...  |    ......+.+|+.+
T Consensus       277 ~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~------~~~~~~L~V~~~p~i~~~--~----~~~~~~v~~G~~v  344 (527)
T 3qs9_E          277 MSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH------PSQSALVTIVEKGFINAT--N----SSEDYEIDQYEEF  344 (527)
T ss_dssp             EEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE------EEEEEEEEEC--CEEECC--C----SCCEECCCTTCCC
T ss_pred             eeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC------CCceEEEEEEccCccccc--c----CcccEEEcCCCeE
Confidence                     123356999999999999999999998      233477888877754321  1    1123668899999


Q ss_pred             EEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCCcccccCCc
Q psy14896        691 RLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTD  770 (813)
Q Consensus       691 ~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~~~~~~~~  770 (813)
                      .|.|.+.|.|.|.|+|+|||.+|..+.+......+|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..+|.|...+. 
T Consensus       345 ~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~~P~i~~~~~-  423 (527)
T 3qs9_E          345 CFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAEAS-  423 (527)
T ss_dssp             CEEEEEEEESCCEEEEEETTEEEECBCCBCSSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--CCCEEEECCC-
T ss_pred             EEEEEEEecCCCEEEEEECCEECcCCcccccCCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEecCCeEEEeCC-
Confidence            9999999999999999999999976655545567899999999999999999999999999999999999999875542 


Q ss_pred             eeecCCCeEEEEEEEcccCCceEEEEECCEec
Q psy14896        771 KHMDNQADLTWTCEAFGVPDVTYSWFRNGELG  802 (813)
Q Consensus       771 ~~~~~g~~~~l~C~~~g~p~~~v~W~k~g~~l  802 (813)
                           |  ..|.|.+.|.|+|.|+|+|++..+
T Consensus       424 -----~--~~l~C~a~g~P~p~i~W~~~~~~~  448 (527)
T 3qs9_E          424 -----A--SQASCFSDGYPLPSWTWKKCSDKS  448 (527)
T ss_dssp             -----C--E---EEEECSSCCEEEEECCC---
T ss_pred             -----C--CEEEEEEEEEcCCeEEEEECCCCc
Confidence                 2  357999999999999999987655

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=100.00  E-value=1.6e-44  Score=388.06  Aligned_cols=373  Identities=30%  Similarity=0.502  Sum_probs=277.9

Q ss_pred             CCCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccc-
Q psy14896        188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQV-  266 (813)
Q Consensus       188 ~~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~-  266 (813)
                      .+|.|+.+|.+..+.++  .+|++++|.|.+.|.|.|.|.|||||.++.        ...+.++...+++|.|.+. .. 
T Consensus         3 ~~P~~~~~p~~~~~~~~--~~g~~v~l~C~~~g~p~~~v~W~k~g~~~~--------~~~~~~~~~~~~~L~i~~~-~~~   71 (382)
T 1cs6_A            3 YGPVFEEQPAHTLFPEG--SAEEKVTLTCRARANPPATYRWKMNGTELK--------MGPDSRYRLVAGDLVISNP-VKA   71 (382)
T ss_dssp             EEEEEEECCCCEEEETT--CSCCEEEECCEEEEESCCEEEEEETTEECC--------CSTTSSEEEETTEEEEESC-CHH
T ss_pred             CCCEEEECCCcEEEecC--CCCCcEEEEEEecCCCCCEEEEEECCEECC--------cCCCccEEeeCCeEEEecc-ccc
Confidence            36899999999888554  356889999999999999999999998663        2345677778899999986 55 


Q ss_pred             cCCeeEEEEeecCceeeEeeeeEEeeeeecccccC-CCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCccE
Q psy14896        267 EDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK-RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRV  345 (813)
Q Consensus       267 ~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~-~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~  345 (813)
                      +|+|.|+|.|.|..|...+..+.|.|.+.+.+... ..+..+.+|+.++|.|.+..+.|.+.+.|+|++.++....+.+.
T Consensus        72 ~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~  151 (382)
T 1cs6_A           72 KDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRR  151 (382)
T ss_dssp             HHCEEEEEEEEETTEEEECCCEEEEEEEECCCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSE
T ss_pred             ccCEEEEEEEEcCCcEEEecceEEEeeccccccccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceE
Confidence            99999999999999988777889999888776654 55677889999999999777889999999999988655555555


Q ss_pred             EEcc-CccEEEeeeeecCCeeeEEEEeeeccccC--CCCCceeeEEccCCcccccccCCCC-CCCCCcCCCCCCcEEEEE
Q psy14896        346 FVSY-DGALYFSALEQIDAGNYSCNVQSKVSDTG--RNGPFFPLKVFPHSNFQQLKFPNNF-PKTFPEAPKAGDKVRLEC  421 (813)
Q Consensus       346 ~~~~-~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~--~~s~~~~l~v~~~~~~~~~~~~~~~-~~~~~~~v~~g~~~~l~C  421 (813)
                      .+.. ++.|.|.+++.+|+|.|+|.|.|..|...  ..+..+.|.+......  ...|... .......+.+|+.+.|.|
T Consensus       152 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~--~~~P~~~~~~~~~~~~~~G~~v~l~C  229 (382)
T 1cs6_A          152 FVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDAR--QYAPSIKAKFPADTYALTGQMVTLEC  229 (382)
T ss_dssp             EECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCC--CEEEEEEECCCSEEEEETTCCEEEEC
T ss_pred             EEecCceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcc--cCCCceeccCCCceEEeCCCeEEEEE
Confidence            5544 47899999999999999999999875321  1233455555322000  0000000 001123345555555555


Q ss_pred             EEeecCCCeeeEeecCCcCCCCceeccccceEEEcccccccceEEeCCCceEecccccccccCeEEEEEeeccCCCcEEE
Q psy14896        422 VAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEW  501 (813)
Q Consensus       422 ~~~g~p~p~i~W~~~~~~l~~~~~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W  501 (813)
                      .+.|.|.|.+.|++++..+..                                                           
T Consensus       230 ~~~g~p~~~i~W~~~~~~~~~-----------------------------------------------------------  250 (382)
T 1cs6_A          230 FAFGNPVPQIKWRKLDGSQTS-----------------------------------------------------------  250 (382)
T ss_dssp             EEEEESCCEEEEEECCSCCSC-----------------------------------------------------------
T ss_pred             EEccCCCCEEEEEECCccccc-----------------------------------------------------------
Confidence            555555555555554433211                                                           


Q ss_pred             eeccccccceeccccCCCCCceEEeeCCeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEEeecccccccCCCceec
Q psy14896        502 FKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGN  581 (813)
Q Consensus       502 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~p~~~~~~~~~~~~  581 (813)
                                           .....++.|.|.++ ..+|+|.|+|.|.|..|.. +..+.|.|..+|.+........+.
T Consensus       251 ---------------------~~~~~~~~L~i~~~-~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~~~~~~~~~~~  307 (382)
T 1cs6_A          251 ---------------------KWLSSEPLLHIQNV-DFEDEGTYECEAENIKGRD-TYQGRIIIHAQPDWLDVITDTEAD  307 (382)
T ss_dssp             ---------------------CCSBSSSEEEECSC-CGGGCEEEEEEEEETTEEE-EEEEEEEEEEEEEEEECCCCEEEE
T ss_pred             ---------------------EEecCCcEEEEccC-ChhhCEEEEEEEEcCCCeE-EEEEEEEEecCCCcccCCCccEEc
Confidence                                 11123567999997 8999999999999999986 455788998888887777777888


Q ss_pred             cCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEEEEeeecCccccCceeeEEE
Q psy14896        582 QNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKV  661 (813)
Q Consensus       582 ~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v  661 (813)
                      .|+.++|.|.+ .|.|.+.|+|+|+|.++  ....++.+ .+++|.|.++..+|+|.|+|.|.|..|....   .+.|.|
T Consensus       308 ~g~~~~l~C~~-~g~p~p~v~W~~~g~~~--~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~---~~~l~V  380 (382)
T 1cs6_A          308 IGSDLRWSCVA-SGKPRPAVRWLRDGQPL--ASQNRIEV-SGGELRFSKLVLEDSGMYQCVAENKHGTVYA---SAELTV  380 (382)
T ss_dssp             TTCCEEEECEE-EEESCCEEEEEETTEEC--CCCSSEEE-ETTEEEESSCCGGGCEEEEEEEEETTEEEEE---EEEEEE
T ss_pred             CCCeEEEEEEe-eeecCCEEEEEECCEEC--CCCceEEE-ECCEEEECcCCcccCEEEEEEEEeCCCeEEE---EEEEEE
Confidence            99999999999 79999999999999763  34455554 4678999999999999999999999987543   356665


Q ss_pred             c
Q psy14896        662 F  662 (813)
Q Consensus       662 ~  662 (813)
                      .
T Consensus       381 ~  381 (382)
T 1cs6_A          381 Q  381 (382)
T ss_dssp             E
T ss_pred             e
Confidence            3

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=100.00  E-value=3e-44  Score=402.59  Aligned_cols=418  Identities=17%  Similarity=0.205  Sum_probs=278.6

Q ss_pred             CCCceeecCCCeEEEecCCCCCCcceEEEeecc--cccc-c---------cCCccEEEccC---ccEEEeeeeecCCeee
Q psy14896        302 RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDY--FPNF-V---------EEDKRVFVSYD---GALYFSALEQIDAGNY  366 (813)
Q Consensus       302 ~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~--~~~~-~---------~~~~~~~~~~~---~~L~i~~v~~~D~G~Y  366 (813)
                      +....+.+|+.++|.|.+ .+.|.+.+.|+|++  ..+. +         ....|+....+   ++|.|.+++.+|+|.|
T Consensus         7 p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y   85 (523)
T 2rcj_C            7 PPSASGTPGQRVTISCTG-TSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDESDY   85 (523)
T ss_pred             CCceEEecCCcEEEEEEE-eccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhhCEEE
Confidence            456678899999999996 66789999999975  2211 0         11345554333   3799999999999999


Q ss_pred             EEEEeeeccccCCCCCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEEEEeecCCC--eeeEeecCCcCCCCc
Q psy14896        367 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVP--SYNWTRRGSPLPRNA  444 (813)
Q Consensus       367 ~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p--~i~W~~~~~~l~~~~  444 (813)
                      +|.|.|..|.....+..+.|.|...+.    .+|..........+.+|+.+.|.|.+.|.|++  .|+|+|+|.++....
T Consensus        86 ~C~a~n~~g~~~~~~~~~~l~V~~~~~----~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~  161 (523)
T 2rcj_C           86 YCASWNSSDNSYVFGTGTKVTVLGQPK----ANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGV  161 (523)
T ss_pred             EEEEccCCCccccccCceEEEeccCCC----cCCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCce
Confidence            999999876433333447788853221    01111111112346678999999999887654  899999888775431


Q ss_pred             eeccccceEEEcccccccceEEeCCCceEecccccccccCeEEEEEeeccCCCcEEEeeccccccceeccccCCCCCceE
Q psy14896        445 YFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRF  524 (813)
Q Consensus       445 ~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~  524 (813)
                      .+..                                                                   ........+
T Consensus       162 ~~~~-------------------------------------------------------------------~~~~~~~~~  174 (523)
T 2rcj_C          162 ETTK-------------------------------------------------------------------PSKQSNNKY  174 (523)
T ss_pred             Eecc-------------------------------------------------------------------ccccCCCCE
Confidence            1100                                                                   000001111


Q ss_pred             EeeCCeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEE----EeecccccccCCCceeccCCCceEEeCCCCCCCcc-
Q psy14896        525 TLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLA----FGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGV-  599 (813)
Q Consensus       525 ~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~----v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-  599 (813)
                       ...+.|.|.++ ..+|+|.|+|.|.|..|..... +.+.    +..+|.+........+.+|+.++|.|.+....|.+ 
T Consensus       175 -~~~s~L~i~~~-~~~d~G~Y~C~a~n~~~~~~~~-~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~l~C~~~g~~P~p~  251 (523)
T 2rcj_C          175 -AASSYLSLTPE-QWKSHRSYSCQVTHEGSTVEKT-VAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPV  251 (523)
T ss_pred             -EEEEEEEEech-hcCCCceEEEEEEecCcccccc-eeeeecCCCCcCCEEEecCCCcccccCCceEEEEEEeceeCCCe
Confidence             12246889886 8999999999999998765332 3322    12334333223334457899999999994334877 


Q ss_pred             EEEEccCCCCCcccCCCeEEEeeC------ccEEEEeecccCCeeEEEEEEeeecCccccCceeeEEEccCCCccccccC
Q psy14896        600 NYYWARDYFPNFVEEDKRVFVSYD------GALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFP  673 (813)
Q Consensus       600 ~v~W~k~~~~~~~~~~~~~~~~~~------~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p  673 (813)
                      .|+|+|+|.++......+. ...+      ++|.|.++..+| |.|+|.|.|..|....   ...|.|...|.+...  +
T Consensus       252 ~v~W~k~g~~~~~~~~~~~-~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~---~~~l~v~~~P~~~~~--~  324 (523)
T 2rcj_C          252 TVSWNSGALTSGVHTFPAV-LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKV---DKRVEPLSLPSVFLF--P  324 (523)
T ss_pred             EEEEecCCcccceEeCCcE-ecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcce---EEecCCCcCceEEec--C
Confidence            8999999976322111111 1222      369999999999 9999999999987432   244555444433211  1


Q ss_pred             CCCCCCCCcCCCCCCeEEEEEEecCCCC----CeEEEEeCCcccCCCcee---e------ecceEEEECCCCCCCCEEEE
Q psy14896        674 NNFPKTFPEAPKAGDKVRLECVAFGYPV----PSYNWTRRGSPLPRNAYF---E------NFNRILTIPNVKVEDQGEYI  740 (813)
Q Consensus       674 ~~~~~~~~~~~~~G~~v~l~C~~~g~P~----p~i~W~k~g~~l~~~~~~---~------~~~~~L~i~~v~~~d~G~Y~  740 (813)
                          +.....+.+|+.++|.|.+.|.|+    +.|+|+|||.++......   .      ...+.|.|.++..+|+|.|+
T Consensus       325 ----p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~  400 (523)
T 2rcj_C          325 ----PKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYK  400 (523)
T ss_pred             ----CCchhhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCccCCceecCCCcEEEEEEEEECHHHhcCCCeEE
Confidence                111123788999999999999754    499999999988654321   1      11346999999999999999


Q ss_pred             EEEEcCCCceEEEEEEE----EEcCCcccccCCc-eeecCCCeEEEEEEEcccCCc--eEEEEECCEeccccc
Q psy14896        741 CRASNDRSALESSVTIS----IQAEPNFTIPLTD-KHMDNQADLTWTCEAFGVPDV--TYSWFRNGELGHQMT  806 (813)
Q Consensus       741 C~a~N~~G~~~~~~~l~----V~~~P~~~~~~~~-~~~~~g~~~~l~C~~~g~p~~--~v~W~k~g~~l~~~~  806 (813)
                      |.|.|..|.......|.    +..+|.+...+.. ..+..| .++|.|.+.|.|++  .|+|+|||++|..+.
T Consensus       401 C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~~~~~~~~~~~~-~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~  472 (523)
T 2rcj_C          401 CKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSREEMTKN-QVSLTCLVKGFYPSDIAVEWESNGQPENNYK  472 (523)
T ss_pred             EEEeCCCCCCceeEEEEcccCCCCCCEEEEeCCChHHccCC-ceEEEEEEEeeECCCCEEEEEECCEECCCee
Confidence            99999988776665565    4677876543333 334444 49999999998766  899999999997543

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=100.00  E-value=2e-45  Score=396.39  Aligned_cols=391  Identities=13%  Similarity=0.088  Sum_probs=234.0

Q ss_pred             cccCCeeEEEEeecCceeeEeeeeEEee------------eee---cccccCCCCceeecCCCeEEEecCCCCCCcceEE
Q psy14896        265 QVEDRGSYHCKASNKFGSIISESVQLAF------------GFI---GEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYY  329 (813)
Q Consensus       265 ~~~d~G~Y~C~a~n~~g~~~s~~~~l~v------------~~~---~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~  329 (813)
                      .-+|.|.|+|...+..+...+..++...            ...   +.+...+.+..+.+|+.+.|.|.+ .+.|.+.+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~c~~~p~~~~~~~~~~~v~V~~G~~v~L~C~v-~g~P~p~i~   81 (423)
T 3qs7_E            3 GNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLV-DAPGNISCL   81 (423)
T ss_dssp             -----------------------------------------------------CEEEECSSCCEEEEEEC-SCCSSCEEE
T ss_pred             ccCCCCeeEEEEEeccCCCccccccccchhhhCCHHHcCCccCCCCCcceeccccEEEecCCcEEEEEEE-EcCCCCeEE
Confidence            3578999999999765543233222221            111   223344557788999999999996 668999999


Q ss_pred             EeeccccccccCCccEEEcc--CccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCcccccccCCCCCCCC
Q psy14896        330 WARDYFPNFVEEDKRVFVSY--DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTF  407 (813)
Q Consensus       330 W~k~~~~~~~~~~~~~~~~~--~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~  407 (813)
                      |++++..+..  ........  ..+|.|.+++.+|+|.|+|.|.|..|....   .+.|.|..+|... .        ..
T Consensus        82 W~~~~~~l~~--~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~---~~~l~V~~~p~~~-~--------~~  147 (423)
T 3qs7_E           82 WVFKHSSLNC--QPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTI---LFTVSIRNTLLYT-L--------RR  147 (423)
T ss_dssp             EEETTEEECC--CCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEEEE---EEEEEEC-----C-E--------EE
T ss_pred             EEECCCccCc--cceeccccceEEEEEEeecCcccCEEEEEEEEcCCCcEEE---EEEEEEecCcccc-c--------cC
Confidence            9999875322  11111111  126999999999999999999998875432   3677776433210 0        11


Q ss_pred             CcCCCCCCcEEEEEEEeecCCCeeeEeecCCcCCCCceeccccceEEEcccccccceEEeCCCceEecccccccccCeEE
Q psy14896        408 PEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITL  487 (813)
Q Consensus       408 ~~~v~~g~~~~l~C~~~g~p~p~i~W~~~~~~l~~~~~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l  487 (813)
                      +..+..|+.+.|.|.+.|+|.|.|+|++++..+.....                                          
T Consensus       148 p~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~------------------------------------------  185 (423)
T 3qs7_E          148 PYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKE------------------------------------------  185 (423)
T ss_dssp             EEEEECSSSSCEEEEEEESSCCEEEEEEC---------------------------------------------------
T ss_pred             CcEeccCCceEEEEEEeeecCCeEEEEECCCCCccccc------------------------------------------
Confidence            11234456666677777777777777666553321000                                          


Q ss_pred             EEEeeccCCCcEEEeeccccccceeccccCCCCCceEEeeCCeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEEee
Q psy14896        488 SCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGF  567 (813)
Q Consensus       488 ~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~  567 (813)
                                                     ............+      ...|+|.|+|.|.|..|...+..+.|.|..
T Consensus       186 -------------------------------~~~~~~~~~~~~l------~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~  228 (423)
T 3qs7_E          186 -------------------------------ESPAVVKKEEKVL------HELFGTDIRCCARNELGRECTRLFTIDLNQ  228 (423)
T ss_dssp             -----------------------------------CEEECCSEE------CCCCSSCEEEEEECSSCEEEEECEEEESSS
T ss_pred             -------------------------------cccccccccceEE------ecccCeEEEEEEEcCCCCcceeeEEEEEec
Confidence                                           0000000011111      467999999999999998766667788876


Q ss_pred             cccccccCCCceeccCCCceEEeCCCCC-CCccEEEEccCCCCCcccCCC---eE----EEeeCccEEEEeecccCCeeE
Q psy14896        568 IGEFNLKRAPEIGNQNWGKAMFCDPPTN-YPGVNYYWARDYFPNFVEEDK---RV----FVSYDGALYFSALEQIDAGNY  639 (813)
Q Consensus       568 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~p~~~v~W~k~~~~~~~~~~~---~~----~~~~~~~L~i~~~~~~d~G~Y  639 (813)
                      +|.+  ......+.+|+.++|.|.+ .| .|.+.|+|+|+|.++......   .+    .....++|.|.+++.+|+|.|
T Consensus       229 ~p~~--~~~~~~v~~G~~v~L~C~~-~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  305 (423)
T 3qs7_E          229 TPQT--TLPQLFLKVGEPLWIRCKA-VHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYY  305 (423)
T ss_dssp             CCCS--STTEEEEETTSCEEEEEEE-EESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEE
T ss_pred             CCcc--CCCceEEeCCCeEEEEEEE-EcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEE
Confidence            6654  2335667889999999999 55 788999999999864221100   00    122345799999999999999


Q ss_pred             EEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCcee
Q psy14896        640 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF  719 (813)
Q Consensus       640 ~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~  719 (813)
                      +|.|.|.      ....+.|.|..+|.+...  |    ......+.+|+++.|.|.+.|+|.|.|+|+|||..|..+...
T Consensus       306 ~C~A~N~------~~~~~~L~V~~~p~i~~~--~----~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~  373 (423)
T 3qs7_E          306 TCSSSKH------PSQSALVTIVEKGFINAT--N----SSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKG  373 (423)
T ss_dssp             EEEETTE------EEEEEEEEEESSCEEEEC---------CEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCB
T ss_pred             EEEEecC------CCceEEEEEEeCCcceEc--C----CCccEEecCCCeEEEEEEEEEcCCCeEEEEECCEECCCcccc
Confidence            9999998      233477888887754322  1    112467889999999999999999999999999999765422


Q ss_pred             eecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCCcc
Q psy14896        720 ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNF  764 (813)
Q Consensus       720 ~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~~  764 (813)
                      ......+.+.....+|+|.|+|.|.|..|..+.++.|.|..+|.-
T Consensus       374 ~~~~~~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L~v~~~p~~  418 (423)
T 3qs7_E          374 LDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGTKH  418 (423)
T ss_dssp             CSSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC-------
T ss_pred             ccCCcEEEEEecccccCEEEEEEEEcCCceEEEEEEEEEecCCcc
Confidence            212223334667789999999999999999999999999988753

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=100.00  E-value=6e-44  Score=386.86  Aligned_cols=381  Identities=24%  Similarity=0.395  Sum_probs=279.4

Q ss_pred             CCCCceeeC-CCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEc---C
Q psy14896        187 PRGPYFIKQ-PTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIIN---D  262 (813)
Q Consensus       187 ~~~P~~~~~-p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~---~  262 (813)
                      ..+|.|... +.+..+.+|     ++++|.|.+.|.|.|.|.|+|||..+....      .........+++|.|.   .
T Consensus        14 ~~~P~i~~~~~~~~~v~~G-----~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~------~~~~~~~~~~~~l~i~~~~~   82 (404)
T 3p3y_A           14 TQPPTITKQSAKDHIVDPR-----DNILIECEAKGNPAPSFHWTRNSRFFNIAK------DPRVSMRRRSGTLVIDFRSG   82 (404)
T ss_dssp             CCCCCEEEECCTTCEECSS-----SCCCCCEEECCSSCCEEEEEETTEECCGGG------CSSCBCCSSSCCCBCCCTTT
T ss_pred             cCCCcccccCCccEEEcCC-----CCEEEEEEecCCCCCeEEEEECCEEeeeec------CCcceEecCCceEEEEeccC
Confidence            356888865 677788777     679999999999999999999998763211      1111112235666654   1


Q ss_pred             CccccCCeeEEEEeecCceeeEeeeeEEeeeeecccccC-CCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccC
Q psy14896        263 PRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK-RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEE  341 (813)
Q Consensus       263 ~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~-~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~  341 (813)
                      .++.+|+|.|+|.|.|..|...+..+.|.|..+|.+... ..+..+.+|+.++|.|.+..+.|.+.+.|++++... ...
T Consensus        83 ~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~-~~~  161 (404)
T 3p3y_A           83 GRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEP-ITQ  161 (404)
T ss_dssp             CCTTSSCEEEEEEEECSSCEEEEEEEEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCB-CCC
T ss_pred             CCCccCCEEEEEEEEcCCCeEeeeeEEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccc-cCC
Confidence            247899999999999999988778889999877765433 456788899999999997788999999999998643 455


Q ss_pred             CccEEEccCccEEEeeeeecC-CeeeEEEEeeeccccCCCCCceeeEEccCCcccccccCCCCCCC--CCcCCCCCCcEE
Q psy14896        342 DKRVFVSYDGALYFSALEQID-AGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKT--FPEAPKAGDKVR  418 (813)
Q Consensus       342 ~~~~~~~~~~~L~i~~v~~~D-~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~~  418 (813)
                      ..++....++.|.|.++..+| +|.|+|.|.|..+.....+..+.|.|...+......+....+..  ....+.+|+.+.
T Consensus       162 ~~~~~~~~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~  241 (404)
T 3p3y_A          162 DKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLL  241 (404)
T ss_dssp             CSSEEECTTSCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEE
T ss_pred             CCcEEEcCCCcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEE
Confidence            667888889999999999999 59999999998876544455567777654332211111111100  112355666666


Q ss_pred             EEEEEeecCCCeeeEeecCCcCCCCceeccccceEEEcccccccceEEeCCCceEecccccccccCeEEEEEeeccCCCc
Q psy14896        419 LECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPS  498 (813)
Q Consensus       419 l~C~~~g~p~p~i~W~~~~~~l~~~~~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~  498 (813)
                      |.|.+.|+|.|.+.|++++..+...                                                       
T Consensus       242 l~C~~~g~p~~~v~W~~~~~~~~~~-------------------------------------------------------  266 (404)
T 3p3y_A          242 LECIASGVPTPDIAWYKKGGDLPSD-------------------------------------------------------  266 (404)
T ss_dssp             EECCBCCSSCCEEEEEETTBCCCTT-------------------------------------------------------
T ss_pred             EEEEECCCCCCcEEEEECCEECCCC-------------------------------------------------------
Confidence            6666666666666666655544321                                                       


Q ss_pred             EEEeeccccccceeccccCCCCCceEEeeCCeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEEeecccccccCCCc
Q psy14896        499 YEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPE  578 (813)
Q Consensus       499 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~p~~~~~~~~~  578 (813)
                                            ...+...+++|.|.++ ..+|+|.|+|.|.|..|.. +..+.|.|..+|.+.......
T Consensus       267 ----------------------~~~~~~~~~~L~i~~~-~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~~~~~~~~  322 (404)
T 3p3y_A          267 ----------------------KAKFENFNKALRITNV-SEEDSGEYFCLASNKMGSI-RHTISVRVKAAPYWLDEPKNL  322 (404)
T ss_dssp             ----------------------TEEEEGGGTEEEESSC-CGGGCEEEEEEEECSSCEE-EEEEEEEEEEEEEEEECCCCE
T ss_pred             ----------------------cccccccCceEEEccC-CHhHCEEEEEEEEeCCCcE-EEEEEEEEeCCCeeeccCCcc
Confidence                                  1122234568999997 9999999999999999986 456889999988887777778


Q ss_pred             eeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEEEEeeecCccccCceee
Q psy14896        579 IGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFP  658 (813)
Q Consensus       579 ~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~  658 (813)
                      .+.+|+.++|.|.+ .|.|.+.|+|+|+|.++............+++|.|.++..+|+|.|+|.|.|..|.....   +.
T Consensus       323 ~v~~g~~~~l~C~~-~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~---~~  398 (404)
T 3p3y_A          323 ILAPGEDGRLVCRA-NGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLAN---AF  398 (404)
T ss_dssp             EECTTCCEEEECEE-EEESCCEEEEEETTEEGGGSCCCTTEEEETTEEEESSCCSSCCCEEEEEEEETTEEEEEE---EE
T ss_pred             eeecCCcEEEEEEc-cccCCCceEEEECCEecCCCCCCceEEecCCEEEEeecCHHHCEEEEEEEEeCCCcEEEE---EE
Confidence            88999999999999 789999999999998754333222333456789999999999999999999999875443   55


Q ss_pred             EEEc
Q psy14896        659 LKVF  662 (813)
Q Consensus       659 l~v~  662 (813)
                      |.|.
T Consensus       399 l~V~  402 (404)
T 3p3y_A          399 VSVL  402 (404)
T ss_dssp             EEEC
T ss_pred             EEEE
Confidence            5553

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=100.00  E-value=3.1e-44  Score=384.92  Aligned_cols=332  Identities=31%  Similarity=0.647  Sum_probs=261.7

Q ss_pred             cceEEeCCCceEecccccccccCeEEEEEeeccCCCcEEEeeccccccceeccccCCCCCceEEeeCCeEEEeCCCCCCC
Q psy14896        462 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED  541 (813)
Q Consensus       462 g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d  541 (813)
                      ++++...|.+..+...  .+|+.+.|.|.+.|.|.|.|+|+|+|.++.        .....++...+++|.|.+....+|
T Consensus         5 ~P~f~~~P~~~~~~~~--~eg~~v~L~C~~~g~P~p~i~W~k~g~~l~--------~~~~~~~~~~~g~l~i~~~~~~~D   74 (384)
T 3kld_A            5 GPVFVQEPSHVMFPLD--SEEKKVKLSCEVKGNPKPHIRWKLNGTDVD--------IGMDFRYSVVDGSLLINNPNKTQD   74 (384)
T ss_dssp             EEEEEECCCCEEEETT--CSCSEEEECCEEEEESCCEEEEEETTEECC--------C----CEEEETTEEEEESCCHHHH
T ss_pred             CCEEEeCCcceEeecC--CCCCeEEEEeEecCCCCCEEEEEECCEECc--------CCCCccEEEECCEEEEcCCCCccc
Confidence            5677777777765332  478999999999999999999999997642        223445667788999988557789


Q ss_pred             CceEEEEEEcCceeEEeecEEEEEeecccccccC-CCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEE
Q psy14896        542 RGSYHCKASNKFGSIISESVQLAFGFIGEFNLKR-APEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFV  620 (813)
Q Consensus       542 ~G~Y~C~a~n~~g~~~s~~~~l~v~~~p~~~~~~-~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~  620 (813)
                      +|.|+|.|.|..|...+..+.+.+.+.+.+.... ....+.+|+.+.|.|.++.+.|.+.+.|++++.++. ....++..
T Consensus        75 ~G~Y~C~A~N~~G~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~-~~~~~~~~  153 (384)
T 3kld_A           75 AGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSY-QDNRRFVS  153 (384)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEEEEEECCCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECC-CSSSEEEC
T ss_pred             CEEEEEEEEcCcccEEecceEEEEecccccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCE-eeccEEEE
Confidence            9999999999999987777888888777654433 345678899999999886677889999999997642 33344444


Q ss_pred             eeCccEEEEeecccCCeeEEEEEEeeecCccccCceeeEEEcc-------CCCccccccCCCCCCCCCcCCCCCCeEEEE
Q psy14896        621 SYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFP-------HSNFQQLKFPNNFPKTFPEAPKAGDKVRLE  693 (813)
Q Consensus       621 ~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~-------~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~  693 (813)
                      ..+++|.|.++..+|+|.|+|.|.|..|..........+.+..       .|.+. +.      ......+.+|++++|.
T Consensus       154 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~-~~------~~~~~~~~~G~~v~l~  226 (384)
T 3kld_A          154 QETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIE-VQ------FPETVPAEKGTTVKLE  226 (384)
T ss_dssp             TTTCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEE-EE------CCSEEEEETTSCEEEE
T ss_pred             cCCCcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCcee-ec------CCCceEecCCCcEEEE
Confidence            5678899999999999999999999887543222222333321       11111 11      1122457899999999


Q ss_pred             EEecCCCCCeEEEEeC-CcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCCcccccCCcee
Q psy14896        694 CVAFGYPVPSYNWTRR-GSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKH  772 (813)
Q Consensus       694 C~~~g~P~p~i~W~k~-g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~~~~~~~~~~  772 (813)
                      |.+.|.|.|.++|+|+ +.++....+....++.|.|.+++.+|+|.|+|.|.|..|.....+.|.|..+|.+...+.+..
T Consensus       227 C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~~~~~~~~~  306 (384)
T 3kld_A          227 CFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIH  306 (384)
T ss_dssp             EEEEEESCCEEEEEETTCCCCCTTCEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEE
T ss_pred             EEEeecCCCcEEEEeCCCccccccceecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCccccCCCceE
Confidence            9999999999999994 556665555555577899999999999999999999999999999999999999998888999


Q ss_pred             ecCCCeEEEEEEEcccCCceEEEEECCEecccccccccc
Q psy14896        773 MDNQADLTWTCEAFGVPDVTYSWFRNGELGHQMTDLLLK  811 (813)
Q Consensus       773 ~~~g~~~~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~i~  811 (813)
                      +..|+++.|.|.+.|.|.|.|+|+|||++|..+.++.+.
T Consensus       307 v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~  345 (384)
T 3kld_A          307 VAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIE  345 (384)
T ss_dssp             ECTTCCEEEECEEEEESCCEEEEEETTEECCCBTTEEEE
T ss_pred             ecCCCCEEEEeECCccCCCeEEEEECCEECCCCccEEEe
Confidence            999999999999999999999999999999887776543

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=100.00  E-value=3e-43  Score=379.02  Aligned_cols=370  Identities=23%  Similarity=0.341  Sum_probs=279.1

Q ss_pred             CCceeeCCCce-eecCCCccccccEEEEeeeccCCCCeEEEee-cccccccccccccccCCCccEEeeCCeEEEcCCccc
Q psy14896        189 GPYFIKQPTDV-VFDLSKRSILNDITLSCYAGGYPNPSYEWFK-EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQV  266 (813)
Q Consensus       189 ~P~~~~~p~~~-~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k-~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  266 (813)
                      +|.|+.+|.+. .+.+|     +.++|.|.+.|.|.|+|+|+| ||..+..        ....+....+++|.|.+. +.
T Consensus         3 ~P~f~~~p~~~~~~~~G-----~~v~l~C~~~g~p~p~v~W~k~~g~~~~~--------~~~~~~~~~~~~L~i~~~-~~   68 (388)
T 2v5m_A            3 GPVFLKEPTNRIDFSNS-----TGAEIECKASGNPMPEIIWIRSDGTAVGD--------VPGLRQISSDGKLVFPPF-RA   68 (388)
T ss_dssp             EEEEEECCCSEEEEETT-----TCEEEECEEEEESCCEEEEEETTSCBCCC--------BTTTBEECSTTEEEECCC-CG
T ss_pred             CCchhhCCCceEEEEcC-----ccEEEEEECCCCCCCEEEEEcCCCCcccc--------CCCceEEcCCceEEeccc-Ch
Confidence            68999998874 45566     669999999999999999999 7765531        223334456888999885 77


Q ss_pred             cC------CeeEEEEeecCceeeEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCC--CcceEEEeecccccc
Q psy14896        267 ED------RGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNY--PGVNYYWARDYFPNF  338 (813)
Q Consensus       267 ~d------~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~--p~~~v~W~k~~~~~~  338 (813)
                      +|      +|.|+|.|.|..|...+..+.|.+..+|.+........+.+|+.++|.|.+....  |.+.+.|++++..+.
T Consensus        69 ~d~~~~~d~G~Y~C~a~n~~g~~~s~~~~v~v~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~  148 (388)
T 2v5m_A           69 EDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENY  148 (388)
T ss_dssp             GGCCHHHHEEEEEEEEEETTEEEECCCEEEEEECCCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEE
T ss_pred             hhccccccCceEEEEEEccCCeEEecceEEEEccccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCccc
Confidence            76      9999999999999877788899988888887777788899999999999975433  348999999998753


Q ss_pred             cc---CCccEEEccCccEEEeeeeecCC-eeeEEEEeeeccccCC-CCCceeeEEccCCcccccccCCCCCCCCCcCCCC
Q psy14896        339 VE---EDKRVFVSYDGALYFSALEQIDA-GNYSCNVQSKVSDTGR-NGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA  413 (813)
Q Consensus       339 ~~---~~~~~~~~~~~~L~i~~v~~~D~-G~Y~C~a~n~~g~~~~-~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~  413 (813)
                      ..   ...++.+..++.|.|.+++.+|+ |.|+|.|.|..+.... ......|.|..+........+...  ..+..+.+
T Consensus       149 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~--~~~~~v~~  226 (388)
T 2v5m_A          149 FPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALV--QKPLELMV  226 (388)
T ss_dssp             CSSSCBTTTEEECTTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSC--CCCEEEET
T ss_pred             ccccCCCCcEEEccCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCcccc--CCceEEee
Confidence            32   25677778889999999999999 9999999998654322 223345666654322212122221  12234677


Q ss_pred             CCcEEEEEEEeecCCCeeeEeecCCcCCCCceeccccceEEEcccccccceEEeCCCceEecccccccccCeEEEEEeec
Q psy14896        414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGG  493 (813)
Q Consensus       414 g~~~~l~C~~~g~p~p~i~W~~~~~~l~~~~~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g  493 (813)
                      |+.+.|.|.+.|+|.|.|.|++++..+.....                                                
T Consensus       227 G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~------------------------------------------------  258 (388)
T 2v5m_A          227 AHTISLLCPAQGFPAPSFRWYKFIEGTTRKQA------------------------------------------------  258 (388)
T ss_dssp             TSCEEECCCCEEESCCEEEEEEECTTSSCEEE------------------------------------------------
T ss_pred             CCcEEEEEECCCCCCCEEEEEecCCCCccccc------------------------------------------------
Confidence            88888888888888888888887654321100                                                


Q ss_pred             cCCCcEEEeeccccccceeccccCCCCCceEEeeCCeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEEeecccccc
Q psy14896        494 YPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNL  573 (813)
Q Consensus       494 ~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~p~~~~  573 (813)
                                              .....++...+++|.|.++ ..+|+|.|+|.|.|..|.. +..+.|.|..+|.+..
T Consensus       259 ------------------------~~~~~~~~~~~~~L~i~~v-~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~~~  312 (388)
T 2v5m_A          259 ------------------------VVLNDRVKQVSGTLIIKDA-VVEDSGKYLCVVNNSVGGE-SVETVLTVTAPLSAKI  312 (388)
T ss_dssp             ------------------------CCCSSSEEEETTEEEESSC-CGGGCEEEEEEEECSSCEE-EEEEEEEEEEEEEEEE
T ss_pred             ------------------------ccccCceecccCEEEECcC-CHHHCeEEEEEEecCCCce-eEEEEEEEeCCCcccc
Confidence                                    0112234445679999997 9999999999999999986 4557889988888777


Q ss_pred             cCCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEEEEeeecCcccc
Q psy14896        574 KRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRN  653 (813)
Q Consensus       574 ~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~  653 (813)
                      .+....+.+|+.++|.|.+ .|.|.+.|+|+|+|.++.  .       .+++|.|.++..+|+|.|+|.|.|..|.....
T Consensus       313 ~~~~~~v~~g~~~~l~C~~-~g~p~p~i~W~~~g~~i~--~-------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~  382 (388)
T 2v5m_A          313 DPPTQTVDFGRPAVFTCQY-TGNPIKTVSWMKDGKAIG--H-------SESVLRIESVKKEDKGMYQCFVRNDRESAEAS  382 (388)
T ss_dssp             ESSEEEECTTSCEEEEEEE-EEECCCEEEEEETTEECS--C-------CSSEEEESSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred             CCCcEEecCCCCEEEEEEe-ccccCCeEEEEECCEECc--c-------CCCEEEEecCChhhCEEEEEEEEcCCCcEEEE
Confidence            7667778899999999999 799999999999997532  1       24679999999999999999999999875443


Q ss_pred             CceeeEEE
Q psy14896        654 GPFFPLKV  661 (813)
Q Consensus       654 ~~~~~l~v  661 (813)
                         +.|.|
T Consensus       383 ---~~l~V  387 (388)
T 2v5m_A          383 ---AELKL  387 (388)
T ss_dssp             ---EEEEE
T ss_pred             ---EEEEe
Confidence               44544

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=100.00  E-value=1e-43  Score=384.89  Aligned_cols=368  Identities=21%  Similarity=0.288  Sum_probs=284.7

Q ss_pred             cccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCccEEEccCccEEEeee-----eecCCeeeEEEEee
Q psy14896        298 FNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSAL-----EQIDAGNYSCNVQS  372 (813)
Q Consensus       298 ~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~v-----~~~D~G~Y~C~a~n  372 (813)
                      +...+....+.+|+.++|.|.+..+.|.+.+.|+|||.++......+.....++.|.|.++     +.+|+|.|+|.|.|
T Consensus        24 ~~~~P~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~D~G~Y~C~~~~  103 (403)
T 3laf_A           24 FVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASL  103 (403)
T ss_dssp             EEECCCCEEECTTCCEEECCEEECTTCCCEEEEEETTEECCTTSCTTEEECTTSCEEECSCCCBTTBCSSCEEEEEEEEC
T ss_pred             EEeCCCceEEecCCcEEEEEEcCCCCCCceEEEEECCEECccCCcccEEEecCCcEEEeeeeccCCCCCcceEEEEEEEe
Confidence            4455677788899999999998667888999999999987666678888888999999888     67899999999997


Q ss_pred             eccccCCCCCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEEEEeecCCCeeeEeecCCcCCCCceeccccce
Q psy14896        373 KVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI  452 (813)
Q Consensus       373 ~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~~~~l~~~~~~~~~~~~  452 (813)
                      ..+.. ..+..+.|.|..++.+.        .......+.+|+.+.|.|.+.+.|.+.+.|++++..+....        
T Consensus       104 ~~~~~-~~s~~~~l~v~~p~~~~--------~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~--------  166 (403)
T 3laf_A          104 GDSGS-IISRTAKVMVAGPLRFL--------SQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIP--------  166 (403)
T ss_dssp             GGGCE-EECCCEEEEECCCCEEC--------SCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCT--------
T ss_pred             CCCcc-EEEEEEEEEecCCCccc--------cCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccC--------
Confidence            64432 22344677776644322        11223467788888888888888888888888776653210        


Q ss_pred             EEEcccccccceEEeCCCceEecccccccccCeEEEEEeeccCCCcEEEeeccccccceeccccCCCCCceEEeeCCeEE
Q psy14896        453 LTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLI  532 (813)
Q Consensus       453 l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  532 (813)
                                                                                        .........+++|.
T Consensus       167 ------------------------------------------------------------------~~~~~~~~~~~~L~  180 (403)
T 3laf_A          167 ------------------------------------------------------------------GDSRVVVLPSGALQ  180 (403)
T ss_dssp             ------------------------------------------------------------------TCCSEEECTTSCEE
T ss_pred             ------------------------------------------------------------------CceEEEEcCCceEE
Confidence                                                                              01111222356899


Q ss_pred             EeCCCCCCCCceEEEEEEcCceeEEeecEEEEEeecccc------cccCCCceeccCCCceEEeCCCCCCCccEEEEccC
Q psy14896        533 INDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEF------NLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARD  606 (813)
Q Consensus       533 i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~p~~------~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~  606 (813)
                      |.++ ..+|+|.|+|.|.|..|...+..+.+.|...|.+      ........+.+|+.++|.|.+ .+.|.+.+.|+|+
T Consensus       181 i~~~-~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~  258 (403)
T 3laf_A          181 ISRL-QPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCV-SGYPPPSFTWLRG  258 (403)
T ss_dssp             ECSC-CGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEE-EEESCCEEEEEET
T ss_pred             Eccc-ccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEc-CCCCCCeEEEEEC
Confidence            9997 9999999999999998876556677777665532      223444567789999999999 6889999999999


Q ss_pred             CCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCC
Q psy14896        607 YFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA  686 (813)
Q Consensus       607 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~  686 (813)
                      +..+. ....++....+++|.|.++..+|+|.|+|.|.|..|...   ..+.|.|..+|.+...        +....+.+
T Consensus       259 ~~~~~-~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~---~~~~l~V~~~p~~~~~--------~~~~~~~~  326 (403)
T 3laf_A          259 EEVIQ-LRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENIS---ASAELTVLVPPWFLNH--------PSNLYAYE  326 (403)
T ss_dssp             TEECC-CSSSSEEEETTTEEEECSCCGGGCEEEEEEEEETTEEEE---EEEEEEEEEEEEEEEC--------CCCEECCT
T ss_pred             Ceecc-CCCceEEECCccEEEEeCCCHHHCEEEEEEEEcCCCceE---EEEEEEEECCCcEeec--------CcceEEec
Confidence            87643 234566666778899999999999999999999987643   3477888877755331        22356789


Q ss_pred             CCeEEEEEEecCCCCCeEEEEeCCcccCCCceee-ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCC
Q psy14896        687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE-NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEP  762 (813)
Q Consensus       687 G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P  762 (813)
                      |++++|.|.+.|.|.|.|+|+|+|..+..+.++. ..++.|.|.++..+|+|.|+|.|.|..|..+.++.|.|..||
T Consensus       327 g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~P~  403 (403)
T 3laf_A          327 SMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKPA  403 (403)
T ss_dssp             TCCEEECCEEEEESCCEEEEEETTEECCCSSSEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEECCCC-
T ss_pred             CCeEEEEEEEeeccCCEEEEEECCEECCCCCcEEEecCccEEEeccccccCEEEEEEEEcCCceEEEEEEEEEeCCC
Confidence            9999999999999999999999999987665443 346789999999999999999999999999999999999886

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=1.3e-43  Score=382.91  Aligned_cols=376  Identities=22%  Similarity=0.351  Sum_probs=265.9

Q ss_pred             CCCCCceeeCCCceeecCCCccccccEEEEeeecc-CCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCc
Q psy14896        186 IPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGG-YPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPR  264 (813)
Q Consensus       186 ~~~~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g-~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~  264 (813)
                      +..||.|+..|.+..+.+|     ++++|.|.+.+ .|.+.|+|+|+|..+....       ........+++|.|.+. 
T Consensus         3 v~~~P~~~~~p~~~~v~~G-----~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~-------~~~~~~~~~~~L~i~~~-   69 (395)
T 1bih_A            3 VDKYPVLKDQPAEVLFREN-----NPTVLECIIEGNDQGVKYSWKKDGKSYNWQE-------HNAALRKDEGSLVFLRP-   69 (395)
T ss_dssp             --CCCEECCCCSEEEEETT-----SCEEECCCEESCCSSCEEEEEESSSBCCTTT-------TTEEECTTSCCEEESSC-
T ss_pred             cCCCCEeecCCCceEEeCC-----CEEEEEEEEecCCCCceEEEEECCcCccccc-------ceEEEecCCceEEEecC-
Confidence            3457999999999998887     66999999998 8999999999998763211       11112234678999886 


Q ss_pred             cccCCeeEEEEeecCceeeEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccc--cccC-
Q psy14896        265 QVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPN--FVEE-  341 (813)
Q Consensus       265 ~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~--~~~~-  341 (813)
                      +.+|+|.|+|.|.|..|...+..+.|.|.+.+.+.+.+....+.+|+.++|.|.+..+.|.+.+.|+|++...  .... 
T Consensus        70 ~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~p~~~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~  149 (395)
T 1bih_A           70 QASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVT  149 (395)
T ss_dssp             CGGGCEEEEEEEEETTEEEECCCEEEEEEEEECCCCEEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCC
T ss_pred             CCCCCcEEEEEEEeCCCeEEeEEEEEEEEEeecCCcCCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccc
Confidence            8999999999999999988667788888777666555556667789999999997788899999999997211  1111 


Q ss_pred             --CccEEEccCccEEEeeeeecCCe---eeEEEEeeeccccCCCCCceeeEEccCCccc-cc-ccCCCCCCCCCcCCCCC
Q psy14896        342 --DKRVFVSYDGALYFSALEQIDAG---NYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQ-QL-KFPNNFPKTFPEAPKAG  414 (813)
Q Consensus       342 --~~~~~~~~~~~L~i~~v~~~D~G---~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~-~~-~~~~~~~~~~~~~v~~g  414 (813)
                        ..++....+++|.|.+++.+|+|   .|+|.|.|..|..........+.+...+... .. ..|..  ......+.+|
T Consensus       150 ~~~~~~~~~~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~G  227 (395)
T 1bih_A          150 DFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY--VSKDMMAKAG  227 (395)
T ss_dssp             CCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE--ECCSEEEETT
T ss_pred             cccccEEEcCCCcEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCcee--cCCceEEECC
Confidence              56778888899999999999999   9999999988753321111111111100000 00 00000  0111234455


Q ss_pred             CcEEEEEEEeecCCCeeeEeecCCcCCCCceeccccceEEEcccccccceEEeCCCceEecccccccccCeEEEEEeecc
Q psy14896        415 DKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGY  494 (813)
Q Consensus       415 ~~~~l~C~~~g~p~p~i~W~~~~~~l~~~~~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~  494 (813)
                      +.+.|.|.+.|+|.|.+.|++++..+...                                                   
T Consensus       228 ~~v~l~C~~~g~p~~~i~W~~~g~~~~~~---------------------------------------------------  256 (395)
T 1bih_A          228 DVTMIYCMYGSNPMGYPNYFKNGKDVNGN---------------------------------------------------  256 (395)
T ss_dssp             SCEEEEEEEECSSCCCCEEEETTEECCCC---------------------------------------------------
T ss_pred             CcEEEEEEeccCCCCeEEEEECCEEcCCC---------------------------------------------------
Confidence            55555555555555555555544433211                                                   


Q ss_pred             CCCcEEEeeccccccceeccccCCCCCceEEe----eCCeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEEeeccc
Q psy14896        495 PNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL----SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGE  570 (813)
Q Consensus       495 p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~p~  570 (813)
                                               ...++..    .+..|.|.++ ..+|+|.|+|.|.|..|...+..+.|.|..+|.
T Consensus       257 -------------------------~~~~~~~~~~~~~~~L~i~~~-~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~  310 (395)
T 1bih_A          257 -------------------------PEDRITRHNRTSGKRLLFKTT-LPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPK  310 (395)
T ss_dssp             -------------------------TTSSEESCSSSTTSEEEESSC-CGGGCEEEEEEECCSSSSCEEEEEEEEEEEEEE
T ss_pred             -------------------------CceeEEEEecCCCceEEEccC-ChhhCEEEEEEEEeCCCCceEEEEEEEEEcCCc
Confidence                                     1112211    1237999997 999999999999999998766578999999998


Q ss_pred             ccccCCC-ceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEEEEeeecC
Q psy14896        571 FNLKRAP-EIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSD  649 (813)
Q Consensus       571 ~~~~~~~-~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  649 (813)
                      +...+.. ..+.+|+.++|.|.+ .|.|.+.|+|+|+|.++  .. .++.+. +++|.|.++..+|+|.|+|.|.|..|.
T Consensus       311 ~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~v~W~~~g~~~--~~-~~~~~~-~~~L~i~~~~~~d~G~Y~C~a~N~~G~  385 (395)
T 1bih_A          311 YEQKPEKVIVVKQGQDVTIPCKV-TGLPAPNVVWSHNAKPL--SG-GRATVT-DSGLVIKGVKNGDKGYYGCRATNEHGD  385 (395)
T ss_dssp             EEECCCSEEEECTTSCEEEECEE-EEESCCCCEEEETTEEC--CS-SSEEEE-TTEEEESSCCSTTCEEEEEEEEETTEE
T ss_pred             cccCCCcceEecCCCeEEEEEEE-CcccCCeeEEEECCEEC--CC-CceEEE-CCEEEEeeCCcccCEEEEEEEEccCCC
Confidence            8776666 677899999999999 78999999999999763  22 255543 559999999999999999999999987


Q ss_pred             ccccCceeeEEE
Q psy14896        650 TGRNGPFFPLKV  661 (813)
Q Consensus       650 ~~~~~~~~~l~v  661 (813)
                      ...   .+.|.|
T Consensus       386 ~~~---~~~l~V  394 (395)
T 1bih_A          386 KYF---ETLVQV  394 (395)
T ss_dssp             EEE---EEEEEE
T ss_pred             ceE---EEEEEE
Confidence            543   245554

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=100.00  E-value=2.2e-42  Score=374.30  Aligned_cols=375  Identities=23%  Similarity=0.314  Sum_probs=279.0

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeecc-CCCCeEEEeecccccccccccccccCCCccE-EeeCCeEEEcCC---
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGG-YPNPSYEWFKEDYVQDRLVANLIDPLSDKRF-TLSGGNLIINDP---  263 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g-~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~-~~~~~~l~i~~~---  263 (813)
                      ...|..+|.+..+.+|     ++++|.|.+.+ .|.+.|.|+|||..+..        ....++ ...+++|.|.+.   
T Consensus        21 ~~~~~~~P~~~~v~~G-----~~v~L~C~~~~~~p~~~v~W~k~g~~~~~--------~~~~~~~~~~~~~l~i~~~~~~   87 (403)
T 3laf_A           21 SLHFVSEPSDAVTMRG-----GNVLLNCSAESDRGVPVIKWKKDGLILAL--------GMDDRKQQLPNGSLLIQNILHS   87 (403)
T ss_dssp             SSEEEECCCCEEECTT-----CCEEECCEEECTTCCCEEEEEETTEECCT--------TSCTTEEECTTSCEEECSCCCB
T ss_pred             eEEEEeCCCceEEecC-----CcEEEEEEcCCCCCCceEEEEECCEECcc--------CCcccEEEecCCcEEEeeeecc
Confidence            4678899999999888     66999999976 68889999999986632        223333 345778877653   


Q ss_pred             -ccccCCeeEEEEeecC-ceeeEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccc-c
Q psy14896        264 -RQVEDRGSYHCKASNK-FGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFV-E  340 (813)
Q Consensus       264 -~~~~d~G~Y~C~a~n~-~g~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~-~  340 (813)
                       ++.+|+|.|+|.|.|. .|...+..+.|.|..++.+........+.+|+.++|.|.+ .+.|.+.+.|+|++..+.. .
T Consensus        88 ~~~~~D~G~Y~C~~~~~~~~~~~s~~~~l~v~~p~~~~~~~~~~~~~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~  166 (403)
T 3laf_A           88 RHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEV-IGDPMPTIHWQKNQQDLNPIP  166 (403)
T ss_dssp             TTBCSSCEEEEEEEECGGGCEEECCCEEEEECCCCEECSCCCCEEEETTSCEEECCCE-ECSSCCEEEEEESSSBCCCCT
T ss_pred             CCCCCcceEEEEEEEeCCCccEEEEEEEEEecCCCccccCCCcEEEEcCCeEEEEEEE-cccCCCeEEEEECCEeccccC
Confidence             2578999999999964 5555577788888877777777777888999999999996 6789999999999987532 4


Q ss_pred             CCccEEEccCccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEE
Q psy14896        341 EDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLE  420 (813)
Q Consensus       341 ~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~  420 (813)
                      ...+.....++.|.|.+++.+|+|.|+|.|.|..+..  .+..+.|.|...+......  ..........+.+|+.+.|.
T Consensus       167 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~--~~~~~~l~v~~~p~~~~~~--~~~~~~~~~~~~~g~~~~l~  242 (403)
T 3laf_A          167 GDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTR--TGNEAEVRILSDPGLHRQL--YFLQRPSNVIAIEGKDAVLE  242 (403)
T ss_dssp             TCCSEEECTTSCEEECSCCGGGCEEEEEEEECSSCCC--BCCCEEEEEECCCCCCEEE--EEEECCCCEEEETTSCEEEC
T ss_pred             CceEEEEcCCceEEEcccccccCEEEEEEEEcCCCce--eccceeEEEecCCCcccCc--eEecCCCceEecCCCcEEEE
Confidence            4566777778899999999999999999999987642  2334677776554321100  00001112234556666666


Q ss_pred             EEEeecCCCeeeEeecCCcCCCCceeccccceEEEcccccccceEEeCCCceEecccccccccCeEEEEEeeccCCCcEE
Q psy14896        421 CVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYE  500 (813)
Q Consensus       421 C~~~g~p~p~i~W~~~~~~l~~~~~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~  500 (813)
                      |.+.++|.|.+.|++++..+..                                                          
T Consensus       243 C~~~~~p~~~~~W~~~~~~~~~----------------------------------------------------------  264 (403)
T 3laf_A          243 CCVSGYPPPSFTWLRGEEVIQL----------------------------------------------------------  264 (403)
T ss_dssp             CEEEEESCCEEEEEETTEECCC----------------------------------------------------------
T ss_pred             EEcCCCCCCeEEEEECCeeccC----------------------------------------------------------
Confidence            6665555555555555544321                                                          


Q ss_pred             EeeccccccceeccccCCCCCceEEeeCCeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEEeecccccccCCCcee
Q psy14896        501 WFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIG  580 (813)
Q Consensus       501 W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~p~~~~~~~~~~~  580 (813)
                                        .........+++|.|.++ ..+|+|.|+|.|.|..|.. +..+.|.|..+|.+...+....+
T Consensus       265 ------------------~~~~~~~~~~~~L~i~~~-~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~~~~~~~~~~  324 (403)
T 3laf_A          265 ------------------RSKKYSLLGGSNLLISNV-TDDDSGTYTCVVTYKNENI-SASAELTVLVPPWFLNHPSNLYA  324 (403)
T ss_dssp             ------------------SSSSEEEETTTEEEECSC-CGGGCEEEEEEEEETTEEE-EEEEEEEEEEEEEEEECCCCEEC
T ss_pred             ------------------CCceEEECCccEEEEeCC-CHHHCEEEEEEEEcCCCce-EEEEEEEEECCCcEeecCcceEE
Confidence                              111122234568999997 9999999999999998876 55688999888888777777778


Q ss_pred             ccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEEEEeeecCccccCceeeEE
Q psy14896        581 NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLK  660 (813)
Q Consensus       581 ~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~  660 (813)
                      .+|+.++|.|.+ .|.|.+.|+|+|+|..  +....++.+..+++|.|.++..+|+|.|+|.|.|..|....   .+.|.
T Consensus       325 ~~g~~v~l~C~~-~g~p~p~v~W~~~g~~--~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~---~~~l~  398 (403)
T 3laf_A          325 YESMDIEFECAV-SGKPVPTVNWMKNGDV--VIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQS---SAQLI  398 (403)
T ss_dssp             CTTCCEEECCEE-EEESCCEEEEEETTEE--CCCSSSEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEEE---EEEEE
T ss_pred             ecCCeEEEEEEE-eeccCCEEEEEECCEE--CCCCCcEEEecCccEEEeccccccCEEEEEEEEcCCceEEE---EEEEE
Confidence            899999999999 7899999999999976  34455666777788999999999999999999999987644   36777


Q ss_pred             EccCC
Q psy14896        661 VFPHS  665 (813)
Q Consensus       661 v~~~p  665 (813)
                      |..+|
T Consensus       399 V~~P~  403 (403)
T 3laf_A          399 VPKPA  403 (403)
T ss_dssp             CCCC-
T ss_pred             EeCCC
Confidence            76653

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=2.9e-42  Score=372.28  Aligned_cols=373  Identities=22%  Similarity=0.296  Sum_probs=269.3

Q ss_pred             eeeeecccccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCccEEEccCccEEEeeeeecCCeeeEEEE
Q psy14896        291 AFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNV  370 (813)
Q Consensus       291 ~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a  370 (813)
                      .|..+|.+...+....+.+|+.++|.|.+..+.|.+.++|+|+|.++............+++|.|.+++.+|+|.|+|.|
T Consensus         2 ~v~~~P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   81 (395)
T 1bih_A            2 PVDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFA   81 (395)
T ss_dssp             ---CCCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEE
T ss_pred             CcCCCCEeecCCCceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccceEEEecCCceEEEecCCCCCCcEEEEEE
Confidence            45567777777777888999999999997555899999999999986544433334455679999999999999999999


Q ss_pred             eeeccccCCCCCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEEEE-eecCCCeeeEeecCCcCCCCceeccc
Q psy14896        371 QSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVA-FGYPVPSYNWTRRGSPLPRNAYFENF  449 (813)
Q Consensus       371 ~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~-~g~p~p~i~W~~~~~~l~~~~~~~~~  449 (813)
                      .|..|...  +..+.|.|...+.      |..  ......+.+|+.+.|.|.+ .+.|.+.|.|++++.......     
T Consensus        82 ~n~~g~~~--s~~~~l~v~~~~~------p~~--~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~-----  146 (395)
T 1bih_A           82 ETPAGVAS--SRVISFRKTYLIA------SPA--KTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNA-----  146 (395)
T ss_dssp             EETTEEEE--CCCEEEEEEEEEC------CCC--EEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGG-----
T ss_pred             EeCCCeEE--eEEEEEEEEEeec------CCc--CCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCccc-----
Confidence            99876533  2235555543221      111  1123467788888888886 677888888888762111000     


Q ss_pred             cceEEEcccccccceEEeCCCceEecccccccccCeEEEEEeeccCCCcEEEeeccccccceeccccCCCCCceEE-eeC
Q psy14896        450 NRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFT-LSG  528 (813)
Q Consensus       450 ~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~-~~~  528 (813)
                                                                                        .......++. ..+
T Consensus       147 ------------------------------------------------------------------~~~~~~~~~~~~~~  160 (395)
T 1bih_A          147 ------------------------------------------------------------------DVTDFDRRITAGPD  160 (395)
T ss_dssp             ------------------------------------------------------------------CCCCCCTTEEECTT
T ss_pred             ------------------------------------------------------------------ccccccccEEEcCC
Confidence                                                                              0000011222 245


Q ss_pred             CeEEEeCCCCCCCCc---eEEEEEEcCceeEEeecE--EEEEee----------cccccccCCCceeccCCCceEEeCCC
Q psy14896        529 GNLIINDPRQVEDRG---SYHCKASNKFGSIISESV--QLAFGF----------IGEFNLKRAPEIGNQNWGKAMFCDPP  593 (813)
Q Consensus       529 ~~l~i~~~~~~~d~G---~Y~C~a~n~~g~~~s~~~--~l~v~~----------~p~~~~~~~~~~~~~g~~~~l~C~~~  593 (813)
                      ++|.|.++ ..+|+|   .|+|.|.|..|.......  .+.+..          +|.+  ......+.+|+.++|.|.+ 
T Consensus       161 ~~L~i~~v-~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~G~~v~l~C~~-  236 (395)
T 1bih_A          161 GNLYFTIV-TKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY--VSKDMMAKAGDVTMIYCMY-  236 (395)
T ss_dssp             SCEEEEEE-CGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE--ECCSEEEETTSCEEEEEEE-
T ss_pred             CcEEEEEE-eeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCcee--cCCceEEECCCcEEEEEEe-
Confidence            67999996 899999   999999999877422211  111111          1111  2345667889999999999 


Q ss_pred             CCCCccEEEEccCCCCCcccCCCeEEEe--eCc-cEEEEeecccCCeeEEEEEEeeecCccccCceeeEEEccCCCcccc
Q psy14896        594 TNYPGVNYYWARDYFPNFVEEDKRVFVS--YDG-ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQL  670 (813)
Q Consensus       594 ~~~p~~~v~W~k~~~~~~~~~~~~~~~~--~~~-~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~  670 (813)
                      .|.|.+.++|+|+|.++......++...  .++ +|.|.++..+|+|.|+|.|.|..|....  ..+.|.|..+|.+...
T Consensus       237 ~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~--~~~~l~V~~~P~~~~~  314 (395)
T 1bih_A          237 GSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQK--HSLKLTVVSAPKYEQK  314 (395)
T ss_dssp             ECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEE--EEEEEEEEEEEEEEEC
T ss_pred             ccCCCCeEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceE--EEEEEEEEcCCccccC
Confidence            7899999999999976544444444432  223 6999999999999999999999886432  2478888888765432


Q ss_pred             ccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCce
Q psy14896        671 KFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSAL  750 (813)
Q Consensus       671 ~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~  750 (813)
                        |     .....+.+|++++|.|.+.|.|.|.|+|+|+|.++..+ ++...++.|+|.+++.+|+|.|+|.|.|.+|..
T Consensus       315 --~-----~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~  386 (395)
T 1bih_A          315 --P-----EKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATVTDSGLVIKGVKNGDKGYYGCRATNEHGDK  386 (395)
T ss_dssp             --C-----CSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEEETTEEEESSCCSTTCEEEEEEEEETTEEE
T ss_pred             --C-----CcceEecCCCeEEEEEEECcccCCeeEEEECCEECCCC-ceEEECCEEEEeeCCcccCEEEEEEEEccCCCc
Confidence              1     11156789999999999999999999999999999766 444445699999999999999999999999999


Q ss_pred             EEEEEEEE
Q psy14896        751 ESSVTISI  758 (813)
Q Consensus       751 ~~~~~l~V  758 (813)
                      +.++.|.|
T Consensus       387 ~~~~~l~V  394 (395)
T 1bih_A          387 YFETLVQV  394 (395)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEEE
Confidence            99999987

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=100.00  E-value=1.2e-40  Score=379.12  Aligned_cols=410  Identities=17%  Similarity=0.197  Sum_probs=289.1

Q ss_pred             CCCceeecCCCeEEEecCCCCCCc---ceEEEeecccccc------------ccCCccEEEcc---Cc--cEEEeeeeec
Q psy14896        302 RAPEIGNQNWGKAMFCDPPTNYPG---VNYYWARDYFPNF------------VEEDKRVFVSY---DG--ALYFSALEQI  361 (813)
Q Consensus       302 ~~~~~~~~~~~~~l~C~~~~~~p~---~~v~W~k~~~~~~------------~~~~~~~~~~~---~~--~L~i~~v~~~  361 (813)
                      +....+.+|+.++|.|.+ .+.|.   +.+.|+|++..+.            .....|+.+..   ++  +|.|.+++.+
T Consensus         7 P~~v~v~~G~~v~L~C~~-~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~   85 (585)
T 2ocw_A            7 PEEVNSVEGNSVSITCYY-PPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQD   85 (585)
T ss_pred             cceeEEecCCcEEEEEeC-CCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCCcc
Confidence            445678899999999996 44443   4899999986421            11224555543   23  6999999999


Q ss_pred             CCeeeEEEEeeeccccCCCCCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEEEEeec-CCCeeeEeecCCcC
Q psy14896        362 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGY-PVPSYNWTRRGSPL  440 (813)
Q Consensus       362 D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~~g~-p~p~i~W~~~~~~l  440 (813)
                      |+|.|+|.|.|..+..   +..+.|.|..+|.+.        .......+.+|+.+.|.|.+.+. |.+.+.|+|++..+
T Consensus        86 D~G~Y~C~~~n~~~~~---~~~~~l~V~~~p~~~--------~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~  154 (585)
T 2ocw_A           86 DSGRYKCGLGINSRGL---SFDVSLEVSQGPGLL--------NDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLY  154 (585)
T ss_pred             cCEEEEEEcccCCCCc---eEEEEEEEecCcccc--------CCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCC
Confidence            9999999999887653   334788887665432        22334568999999999999865 45689999987653


Q ss_pred             CCCceeccccceEEEcccccccceEEeCCCceEecccccccccCeEEEEEeeccCCCcEEEeeccccccceeccccCCCC
Q psy14896        441 PRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS  520 (813)
Q Consensus       441 ~~~~~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~  520 (813)
                      ..... .                                           ..+.                     ..+..
T Consensus       155 ~~~~~-~-------------------------------------------~~~~---------------------~~~~~  169 (585)
T 2ocw_A          155 PVLVI-D-------------------------------------------SSGY---------------------VNPNY  169 (585)
T ss_pred             ceEEe-c-------------------------------------------CCcc---------------------cCccc
Confidence            21000 0                                           0000                     00001


Q ss_pred             CceEEe--eC-----CeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEEeecccccccCCCceeccCCCceEEeCCC
Q psy14896        521 DKRFTL--SG-----GNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPP  593 (813)
Q Consensus       521 ~~~~~~--~~-----~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~  593 (813)
                      ..++.+  .+     .+|.|.++ ..+|+|.|+|.|.|..|.. +..+.|.|..++.     ....+.+|+.++|.|.+.
T Consensus       170 ~~r~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~~p-----~~~~~~~G~~v~l~C~~~  242 (585)
T 2ocw_A          170 TGRIRLDIQGTGQLLFSVVINQL-RLSDAGQYLCQAGDDSNSN-KKNADLQVLKPEP-----ELVYEDLRGSVTFHCALG  242 (585)
T ss_pred             cCcEEEEeccCCCcEEEEEEccC-ChhHCeEEEEEeccCCccc-cceEEEEEccCCC-----ceeEEcCCCcEEEEEEcC
Confidence            111211  11     27999997 9999999999999998875 4557777765432     223467899999999973


Q ss_pred             CCCCc-cEEEEc-cCCCCC--ccc--------CCCeEEEee---Cc--cEEEEeecccCCeeEEEEEEeeecCccc--cC
Q psy14896        594 TNYPG-VNYYWA-RDYFPN--FVE--------EDKRVFVSY---DG--ALYFSALEQIDAGNYSCNVQSKVSDTGR--NG  654 (813)
Q Consensus       594 ~~~p~-~~v~W~-k~~~~~--~~~--------~~~~~~~~~---~~--~L~i~~~~~~d~G~Y~C~a~n~~g~~~~--~~  654 (813)
                      ...|. +.+.|+ ++|...  .+.        ...++.+..   +|  +|.|.+++.+|+|.|+|.|.|. |....  ..
T Consensus       243 ~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~~~~~  321 (585)
T 2ocw_A          243 PEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSD-GQLQEGSPI  321 (585)
T ss_pred             CCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcC-CCccccCce
Confidence            22333 789997 887421  111        234454442   55  6999999999999999999995 43221  11


Q ss_pred             ceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeE----EEEe--CCc--ccCCC---------c
Q psy14896        655 PFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSY----NWTR--RGS--PLPRN---------A  717 (813)
Q Consensus       655 ~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i----~W~k--~g~--~l~~~---------~  717 (813)
                      ..+.|.|..+|.+..        .+....+.+|++++|.|.+.|.|.|.+    +|+|  ||.  .+...         .
T Consensus       322 ~~~~l~V~~~p~~~~--------~~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~  393 (585)
T 2ocw_A          322 QAWQLFVNEESTIPR--------SPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEG  393 (585)
T ss_pred             eeEEEEEeccccccc--------CCcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccCC
Confidence            457788888775532        223356789999999999999999977    8999  887  55321         1


Q ss_pred             eee------ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCCcccccCCceeecCCCeEEEEEEEc----c
Q psy14896        718 YFE------NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAF----G  787 (813)
Q Consensus       718 ~~~------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~----g  787 (813)
                      ++.      ....+|+|.+++.+|+|.|+|.| |..|..+..+.|.|..+|.....+....+.+|++++|.|.+.    |
T Consensus       394 r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~~~  472 (585)
T 2ocw_A          394 RLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSS  472 (585)
T ss_pred             CEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEecCccccccCCceeEecCCcEEEEEEecCCCCC
Confidence            221      11234999999999999999999 999999999999998754444447788899999999999997    7


Q ss_pred             cCCceEEEEECCEecccc
Q psy14896        788 VPDVTYSWFRNGELGHQM  805 (813)
Q Consensus       788 ~p~~~v~W~k~g~~l~~~  805 (813)
                      .|.+.|.|+|||++|..+
T Consensus       473 ~p~~~v~W~k~g~~~~~~  490 (585)
T 2ocw_A          473 YEKYWCKWNNTGCQALPS  490 (585)
T ss_pred             CccEEEEEeecCceeeec
Confidence            889999999999988543

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=100.00  E-value=2.7e-42  Score=373.81  Aligned_cols=368  Identities=18%  Similarity=0.299  Sum_probs=268.2

Q ss_pred             eeeecccccC-CCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCccEEEc-cCccEEEe----eeeecCCee
Q psy14896        292 FGFIGEFNLK-RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVS-YDGALYFS----ALEQIDAGN  365 (813)
Q Consensus       292 v~~~~~~~~~-~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~-~~~~L~i~----~v~~~D~G~  365 (813)
                      +..+|.+... .....+.+|+.++|.|.+ .|.|.++++|+|||..+......++... .+++|.|.    +++.+|+|.
T Consensus        13 ~~~~P~i~~~~~~~~~v~~G~~v~l~C~~-~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~~D~G~   91 (404)
T 3p3y_A           13 LTQPPTITKQSAKDHIVDPRDNILIECEA-KGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGE   91 (404)
T ss_dssp             CCCCCCEEEECCTTCEECSSSCCCCCEEE-CCSSCCEEEEEETTEECCGGGCSSCBCCSSSCCCBCCCTTTCCTTSSCEE
T ss_pred             ccCCCcccccCCccEEEcCCCCEEEEEEe-cCCCCCeEEEEECCEEeeeecCCcceEecCCceEEEEeccCCCCccCCEE
Confidence            3445555543 456678899999999995 7789999999999988665555555544 45677775    888999999


Q ss_pred             eEEEEeeeccccCCCCCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEEEE-eecCCCeeeEeecCCcCCCCc
Q psy14896        366 YSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVA-FGYPVPSYNWTRRGSPLPRNA  444 (813)
Q Consensus       366 Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~-~g~p~p~i~W~~~~~~l~~~~  444 (813)
                      |+|.|.|..|...  +..+.|.|...|.....       ...+..+.+|+.+.|.|.+ .+.|.+.+.|++++..+... 
T Consensus        92 Y~C~a~n~~g~~~--s~~~~l~V~~~p~~~~~-------~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~-  161 (404)
T 3p3y_A           92 YQCFARNKFGTAL--SNRIRLQVSKSPLWPKE-------NLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQ-  161 (404)
T ss_dssp             EEEEEECSSCEEE--EEEEEEEECCCCCCCCC-------CCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCC-
T ss_pred             EEEEEEcCCCeEe--eeeEEEEEeccCccccC-------CCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCC-
Confidence            9999999876532  23467777765432211       1122457788888888887 66777777777765332110 


Q ss_pred             eeccccceEEEcccccccceEEeCCCceEecccccccccCeEEEEEeeccCCCcEEEeeccccccceeccccCCCCCceE
Q psy14896        445 YFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRF  524 (813)
Q Consensus       445 ~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~  524 (813)
                                                                                                 .....
T Consensus       162 ---------------------------------------------------------------------------~~~~~  166 (404)
T 3p3y_A          162 ---------------------------------------------------------------------------DKRVS  166 (404)
T ss_dssp             ---------------------------------------------------------------------------CSSEE
T ss_pred             ---------------------------------------------------------------------------CCcEE
Confidence                                                                                       11111


Q ss_pred             EeeCCeEEEeCCCCCCC-CceEEEEEEcCceeEE--eecEEEEEeec-------ccccccC---CCceeccCCCceEEeC
Q psy14896        525 TLSGGNLIINDPRQVED-RGSYHCKASNKFGSII--SESVQLAFGFI-------GEFNLKR---APEIGNQNWGKAMFCD  591 (813)
Q Consensus       525 ~~~~~~l~i~~~~~~~d-~G~Y~C~a~n~~g~~~--s~~~~l~v~~~-------p~~~~~~---~~~~~~~g~~~~l~C~  591 (813)
                      ...+++|.|.++ ..+| +|.|+|.|.|..|...  +..+.+.+...       |.+....   ....+.+|+.++|.|.
T Consensus       167 ~~~~~~l~i~~v-~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~  245 (404)
T 3p3y_A          167 QGHNGDLYFSNV-MLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECI  245 (404)
T ss_dssp             ECTTSCEEESSC-CSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECC
T ss_pred             EcCCCcEEEEee-eeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEE
Confidence            224567999997 8888 5999999999877532  22345555432       2222211   1234678999999999


Q ss_pred             CCCCCCccEEEEccCCCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEEEEeeecCccccCceeeEEEccCCCccccc
Q psy14896        592 PPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLK  671 (813)
Q Consensus       592 ~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~  671 (813)
                      + .+.|.+.++|+|+|.++  ..........+++|.|.++..+|+|.|+|.|.|..|...   ..+.|.|..+|.+..  
T Consensus       246 ~-~g~p~~~v~W~~~~~~~--~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~---~~~~l~V~~~p~~~~--  317 (404)
T 3p3y_A          246 A-SGVPTPDIAWYKKGGDL--PSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIR---HTISVRVKAAPYWLD--  317 (404)
T ss_dssp             B-CCSSCCEEEEEETTBCC--CTTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSCEEE---EEEEEEEEEEEEEEE--
T ss_pred             E-CCCCCCcEEEEECCEEC--CCCcccccccCceEEEccCCHhHCEEEEEEEEeCCCcEE---EEEEEEEeCCCeeec--
Confidence            9 78999999999999863  333444445567899999999999999999999988643   347888888775543  


Q ss_pred             cCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCc---eeeecceEEEECCCCCCCCEEEEEEEEcCCC
Q psy14896        672 FPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA---YFENFNRILTIPNVKVEDQGEYICRASNDRS  748 (813)
Q Consensus       672 ~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~---~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G  748 (813)
                            .+....+.+|+.++|.|.+.|.|.|.|+|+|+|..+....   .....+++|.|.+++.+|+|.|+|.|.|..|
T Consensus       318 ------~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G  391 (404)
T 3p3y_A          318 ------EPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHG  391 (404)
T ss_dssp             ------CCCCEEECTTCCEEEECEEEEESCCEEEEEETTEEGGGSCCCTTEEEETTEEEESSCCSSCCCEEEEEEEETTE
T ss_pred             ------cCCcceeecCCcEEEEEEccccCCCceEEEECCEecCCCCCCceEEecCCEEEEeecCHHHCEEEEEEEEeCCC
Confidence                  1223567899999999999999999999999999886543   2333466899999999999999999999999


Q ss_pred             ceEEEEEEEEEc
Q psy14896        749 ALESSVTISIQA  760 (813)
Q Consensus       749 ~~~~~~~l~V~~  760 (813)
                      ..+.++.|.|.+
T Consensus       392 ~~~~~~~l~V~d  403 (404)
T 3p3y_A          392 YLLANAFVSVLD  403 (404)
T ss_dssp             EEEEEEEEEEC-
T ss_pred             cEEEEEEEEEEe
Confidence            999999999864

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=5.3e-42  Score=376.89  Aligned_cols=380  Identities=12%  Similarity=0.136  Sum_probs=262.3

Q ss_pred             cCCCCceeecCCCeEEEecCCCCCCcceE-----EEeeccccccccCCccEEEccCccEEEeeeeecCCeeeEEEEeeec
Q psy14896        300 LKRAPEIGNQNWGKAMFCDPPTNYPGVNY-----YWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV  374 (813)
Q Consensus       300 ~~~~~~~~~~~~~~~l~C~~~~~~p~~~v-----~W~k~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~  374 (813)
                      +.+....+.+|+.++|.|.+ .| |.+.+     .|+|++..+.   ..+     ...|.|.+++. |+| |+|.|.+..
T Consensus         4 ~~P~~~~v~~G~~v~L~C~~-~g-p~p~~~~~~~~w~k~~~~~~---~~~-----~~~l~i~~v~~-d~g-Y~C~a~~~~   71 (450)
T 1z7z_I            4 VSPSKVILPRGGSVLVTCST-SC-DQPMLLGIETPLPKKELLLP---GNN-----RKVYELSNVQE-DSQ-PMCYSNCPD   71 (450)
T ss_dssp             EESSEEEEETTEEEEEEEEC-CS-SCCCEEEECSSSCEEECCSS---TTT-----EEEEEEEEECS-CBC-CEEEEEETT
T ss_pred             cCCCceEEecCCcEEEEEEc-cC-CCcccccccceeeecceEec---CCC-----ceEEEEEeccc-CCe-eEEEEeCCC
Confidence            34456678889999999996 55 88898     9999987531   111     13799999987 999 999997654


Q ss_pred             cccCCCCCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEEEEeecCCC---eeeEeecCCcCCCCceeccccc
Q psy14896        375 SDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVP---SYNWTRRGSPLPRNAYFENFNR  451 (813)
Q Consensus       375 g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p---~i~W~~~~~~l~~~~~~~~~~~  451 (813)
                      +..   +..+.|.|..+|......+       .+..+.+|+.+.|.|.+.+.|.+   .|+|+|++.++.....      
T Consensus        72 ~~~---~~~~~l~V~~~P~~~~~~~-------~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~------  135 (450)
T 1z7z_I           72 GQS---TAKTFLTVYWTPERVELAP-------LPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPA------  135 (450)
T ss_dssp             EEE---EEECEEEEEBCCSEEEECC-------CCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC------
T ss_pred             Ccc---eeEEEEEEEeCCCcceecC-------CCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeecccc------
Confidence            322   3347788876655432221       22468899999999999998877   8899888766532100      


Q ss_pred             eEEEcccccccceEEeCCCceEecccccccccCeEEEEEeeccCCCcEEEeeccccccceeccccCCCCCceEEeeCCeE
Q psy14896        452 ILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNL  531 (813)
Q Consensus       452 ~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l  531 (813)
                                                                                         ..    ...+++|
T Consensus       136 -------------------------------------------------------------------~~----~~~~~~L  144 (450)
T 1z7z_I          136 -------------------------------------------------------------------VG----EPAEVTT  144 (450)
T ss_dssp             -------------------------------------------------------------------CT----TTEEEEE
T ss_pred             -------------------------------------------------------------------cc----cccceEE
Confidence                                                                               00    0012478


Q ss_pred             EEeCCCCCCCCceEEEEEEcCceeE-------EeecEEEEEeeccc-ccccCCCceeccCCCceEEeCCCCCC-C--ccE
Q psy14896        532 IINDPRQVEDRGSYHCKASNKFGSI-------ISESVQLAFGFIGE-FNLKRAPEIGNQNWGKAMFCDPPTNY-P--GVN  600 (813)
Q Consensus       532 ~i~~~~~~~d~G~Y~C~a~n~~g~~-------~s~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~~-p--~~~  600 (813)
                      .|.++ ..+|+|.|+|.|.|..|..       .+....+.|...+. ......+..+.+|+.++|.|.+ .+. |  .+.
T Consensus       145 ~i~~~-~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~~~~v~~G~~v~l~C~~-~g~~P~~~~~  222 (450)
T 1z7z_I          145 TVLVR-RDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSL-DGLFPVSEAQ  222 (450)
T ss_dssp             EEECC-SSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEECCSEEETTSEEEEEEEE-ESCTTGGGCE
T ss_pred             EEEee-ccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecCceeEEeCCcEEEEEEe-eCCCCCCceE
Confidence            89886 8999999999999986632       22344555543311 1111223667889999999999 566 7  799


Q ss_pred             EEEccCCCCCcccCCCeEEEeeCccEEE---EeecccCCe--eEEEEEEeeecCccccCceeeEEEccCCCccccccCCC
Q psy14896        601 YYWARDYFPNFVEEDKRVFVSYDGALYF---SALEQIDAG--NYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNN  675 (813)
Q Consensus       601 v~W~k~~~~~~~~~~~~~~~~~~~~L~i---~~~~~~d~G--~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~  675 (813)
                      ++|++++.++..    ++....++ +.+   .++..+|+|  .|+|.|.|..|....   .+.|.|...|. ..+..   
T Consensus       223 ~~W~~~~~~~~~----~~~~~~~~-~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~---~~~l~V~~~~~-p~i~~---  290 (450)
T 1z7z_I          223 VHLALGDQRLNP----TVTYGNDS-FSAKASVSVTAEDEGTQRLTCAVILGNQSQET---LQTVTIYSFPA-PNVIL---  290 (450)
T ss_dssp             EEEEETTEECCC----EEEEETTE-EEEEEEEECCGGGCEEEEEEEEEEETTEEEEE---EEEEEEECCCC-CEEEE---
T ss_pred             EEEeCCCEeCCc----eEEecCCc-eeEEEEEEeEhhhCCcEEEEEEEccCCccEEE---EEEEEEecCCC-CeEec---
Confidence            999999975322    33333333 222   277999999  999999998876433   46677776443 11211   


Q ss_pred             CCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCC----ceE
Q psy14896        676 FPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRS----ALE  751 (813)
Q Consensus       676 ~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G----~~~  751 (813)
                          .+..+.+|++++|.|.+.  |.|.|+|  +|.++...    .....|.|.++..+|+|.|+|.|.|..|    ..+
T Consensus       291 ----~~~~v~~G~~v~l~C~~~--p~p~i~W--~g~~~~~~----~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~  358 (450)
T 1z7z_I          291 ----TKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPL----GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKN  358 (450)
T ss_dssp             ----SCSEEETTCEEEEEEEC------------------------CCCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEE
T ss_pred             ----CCeeEeCCCcEEEEEecC--CCCEeEE--CCEEcCCC----CceEEEEEecCcccCCceEEEEEEcCCCCcccccc
Confidence                124688999999999998  8899999  88887321    1245899999999999999999998766    445


Q ss_pred             EEEEEEEEcCCcccccC--CceeecCCCeEEEEEEEcccCCceEEEEECCEeccc
Q psy14896        752 SSVTISIQAEPNFTIPL--TDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELGHQ  804 (813)
Q Consensus       752 ~~~~l~V~~~P~~~~~~--~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~g~~l~~  804 (813)
                      .++.|.|..+|.+...+  .+..+.+|++++|.|.+.|+|+|.|+|+|||+.+..
T Consensus       359 ~~~~l~V~~~P~~~~~~~p~~~~~~~g~~~~l~C~~~g~P~p~i~W~~~g~~~~~  413 (450)
T 1z7z_I          359 QTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLP  413 (450)
T ss_dssp             EEEECEEEEEEECCSTTSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECC
T ss_pred             eeEEEEEecCCceeeccCCCceeEcCCCeEEEEEecccCCCCcEEEEECCcccCC
Confidence            78999999999987654  677899999999999999999999999999985544

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=100.00  E-value=1.1e-40  Score=358.18  Aligned_cols=329  Identities=33%  Similarity=0.624  Sum_probs=262.3

Q ss_pred             cceEEeCCCceEecccccccccCeEEEEEeeccCCCcEEEeeccccccceeccccCCCCCceEEeeCCeEEEeCCCCC-C
Q psy14896        462 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQV-E  540 (813)
Q Consensus       462 g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~-~  540 (813)
                      ++.+...|.+..+..  ..+|+.++|.|.+.|.|.+.|.|+|+|..+        ......++...+++|.|.++ .. +
T Consensus         4 ~P~~~~~p~~~~~~~--~~~g~~v~l~C~~~g~p~~~v~W~k~g~~~--------~~~~~~~~~~~~~~L~i~~~-~~~~   72 (382)
T 1cs6_A            4 GPVFEEQPAHTLFPE--GSAEEKVTLTCRARANPPATYRWKMNGTEL--------KMGPDSRYRLVAGDLVISNP-VKAK   72 (382)
T ss_dssp             EEEEEECCCCEEEET--TCSCCEEEECCEEEEESCCEEEEEETTEEC--------CCSTTSSEEEETTEEEEESC-CHHH
T ss_pred             CCEEEECCCcEEEec--CCCCCcEEEEEEecCCCCCEEEEEECCEEC--------CcCCCccEEeeCCeEEEecc-cccc
Confidence            344555555554421  257899999999999999999999999664        22334567778899999997 65 9


Q ss_pred             CCceEEEEEEcCceeEEeecEEEEEeeccccccc-CCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEE
Q psy14896        541 DRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK-RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVF  619 (813)
Q Consensus       541 d~G~Y~C~a~n~~g~~~s~~~~l~v~~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~  619 (813)
                      |+|.|+|.|.|..|...+..+.|.|..++.+... ..+..+.+|+.++|.|.+..+.|.+.++|+|++.++....+.+..
T Consensus        73 D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~  152 (382)
T 1cs6_A           73 DAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRF  152 (382)
T ss_dssp             HCEEEEEEEEETTEEEECCCEEEEEEEECCCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEE
T ss_pred             cCEEEEEEEEcCCcEEEecceEEEeeccccccccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceEE
Confidence            9999999999999988777788888877765543 455678899999999997677889999999999876555555555


Q ss_pred             Ee-eCccEEEEeecccCCeeEEEEEEeeecCcccc--CceeeEEEcc------CCCccccccCCCCCCCCCcCCCCCCeE
Q psy14896        620 VS-YDGALYFSALEQIDAGNYSCNVQSKVSDTGRN--GPFFPLKVFP------HSNFQQLKFPNNFPKTFPEAPKAGDKV  690 (813)
Q Consensus       620 ~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~--~~~~~l~v~~------~p~~~~~~~p~~~~~~~~~~~~~G~~v  690 (813)
                      +. .+++|.|.+++.+|+|.|+|.|.|..|.....  ...+.|.|..      +|.+..       .......+.+|+.+
T Consensus       153 ~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~-------~~~~~~~~~~G~~v  225 (382)
T 1cs6_A          153 VSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKA-------KFPADTYALTGQMV  225 (382)
T ss_dssp             ECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEE-------CCCSEEEEETTCCE
T ss_pred             EecCceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceec-------cCCCceEEeCCCeE
Confidence            54 44789999999999999999999988543211  2234455432      221111       01223567899999


Q ss_pred             EEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCCcccccCCc
Q psy14896        691 RLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTD  770 (813)
Q Consensus       691 ~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~~~~~~~~  770 (813)
                      +|.|.+.|.|.|.++|+|++..+..  ........|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..+|.+...+..
T Consensus       226 ~l~C~~~g~p~~~i~W~~~~~~~~~--~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~  303 (382)
T 1cs6_A          226 TLECFAFGNPVPQIKWRKLDGSQTS--KWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITD  303 (382)
T ss_dssp             EEECEEEEESCCEEEEEECCSCCSC--CCSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCC
T ss_pred             EEEEEEccCCCCEEEEEECCccccc--EEecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCCcccCCCc
Confidence            9999999999999999999988754  23345678999999999999999999999999999999999999999888888


Q ss_pred             eeecCCCeEEEEEEEcccCCceEEEEECCEeccccccccc
Q psy14896        771 KHMDNQADLTWTCEAFGVPDVTYSWFRNGELGHQMTDLLL  810 (813)
Q Consensus       771 ~~~~~g~~~~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~i  810 (813)
                      ..+.+|+.++|.|.+.|.|.|.|.|+|||++|..+.++.+
T Consensus       304 ~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~  343 (382)
T 1cs6_A          304 TEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEV  343 (382)
T ss_dssp             EEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEE
T ss_pred             cEEcCCCeEEEEEEeeeecCCEEEEEECCEECCCCceEEE
Confidence            8999999999999999999999999999999988776543

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=100.00  E-value=1.8e-40  Score=357.28  Aligned_cols=321  Identities=22%  Similarity=0.346  Sum_probs=254.1

Q ss_pred             ccccCeEEEEEeeccCCCcEEEee-ccccccceeccccCCCCCceEEeeCCeEEEeCCCCCCC------CceEEEEEEcC
Q psy14896        480 SILNDITLSCYAGGYPNPSYEWFK-EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED------RGSYHCKASNK  552 (813)
Q Consensus       480 ~~g~~~~l~C~~~g~p~~~v~W~k-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d------~G~Y~C~a~n~  552 (813)
                      .+|+.++|.|.+.|.|.|.|.|+| +|..+..        ....+....+++|.|.++ ..+|      +|.|+|.|.|.
T Consensus        17 ~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~--------~~~~~~~~~~~~L~i~~~-~~~d~~~~~d~G~Y~C~a~n~   87 (388)
T 2v5m_A           17 SNSTGAEIECKASGNPMPEIIWIRSDGTAVGD--------VPGLRQISSDGKLVFPPF-RAEDYRQEVHAQVYACLARNQ   87 (388)
T ss_dssp             ETTTCEEEECEEEEESCCEEEEEETTSCBCCC--------BTTTBEECSTTEEEECCC-CGGGCCHHHHEEEEEEEEEET
T ss_pred             EcCccEEEEEECCCCCCCEEEEEcCCCCcccc--------CCCceEEcCCceEEeccc-ChhhccccccCceEEEEEEcc
Confidence            679999999999999999999999 7755421        122334456789999997 7776      99999999999


Q ss_pred             ceeEEeecEEEEEeecccccccCCCceeccCCCceEEeCCCCCCC---ccEEEEccCCCCCccc---CCCeEEEeeCccE
Q psy14896        553 FGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYP---GVNYYWARDYFPNFVE---EDKRVFVSYDGAL  626 (813)
Q Consensus       553 ~g~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p---~~~v~W~k~~~~~~~~---~~~~~~~~~~~~L  626 (813)
                      .|...+..+.|.+..+|.+........+.+|+.++|.|.+. +.+   .+.|+|+|++..+...   ...++.+..+++|
T Consensus        88 ~g~~~s~~~~v~v~~~p~~~~~~~~~~v~~G~~v~l~C~~~-~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L  166 (388)
T 2v5m_A           88 FGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIP-SFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGEL  166 (388)
T ss_dssp             TEEEECCCEEEEEECCCCCCCBCCCEEEETTSCEEECCBCC-TTTTTTEEEEEEEETTCCEECSSSCBTTTEEECTTSCE
T ss_pred             CCeEEecceEEEEccccccccCccceeeecCCcEEEEEECc-CCCCCCcceEEEEeCCCcccccccCCCCcEEEccCCcE
Confidence            99877777888888888877777777889999999999994 443   4899999998764322   2457777788999


Q ss_pred             EEEeecccCC-eeEEEEEEeeecCccc-cCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeE
Q psy14896        627 YFSALEQIDA-GNYSCNVQSKVSDTGR-NGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSY  704 (813)
Q Consensus       627 ~i~~~~~~d~-G~Y~C~a~n~~g~~~~-~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i  704 (813)
                      .|.+++.+|+ |.|+|.|.|..+.... ......|.|..+.......+|...  ..+..+.+|+.++|.|.+.|.|.|.|
T Consensus       167 ~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~--~~~~~v~~G~~v~l~C~~~g~p~p~v  244 (388)
T 2v5m_A          167 HIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALV--QKPLELMVAHTISLLCPAQGFPAPSF  244 (388)
T ss_dssp             EESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSC--CCCEEEETTSCEEECCCCEEESCCEE
T ss_pred             EEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCcccc--CCceEEeeCCcEEEEEECCCCCCCEE
Confidence            9999999999 9999999998654322 222345666655322211122211  12245788999999999999999999


Q ss_pred             EEEeCCcccC------CCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCCcccccCCceeecCCCe
Q psy14896        705 NWTRRGSPLP------RNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQAD  778 (813)
Q Consensus       705 ~W~k~g~~l~------~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~~~~~~~~~~~~~g~~  778 (813)
                      +|+|++..+.      .+.++....+.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..+|.+...+....+.+|++
T Consensus       245 ~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~  324 (388)
T 2v5m_A          245 RWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRP  324 (388)
T ss_dssp             EEEEECTTSSCEEECCCSSSEEEETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEEESSEEEECTTSC
T ss_pred             EEEecCCCCcccccccccCceecccCEEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCCCccccCCCcEEecCCCC
Confidence            9999865443      2233444567899999999999999999999999999999999999999888888889999999


Q ss_pred             EEEEEEEcccCCceEEEEECCEecccccc-ccccc
Q psy14896        779 LTWTCEAFGVPDVTYSWFRNGELGHQMTD-LLLKA  812 (813)
Q Consensus       779 ~~l~C~~~g~p~~~v~W~k~g~~l~~~~~-~~i~~  812 (813)
                      ++|.|.+.|.|.|.|+|+|||++|..+.. +.|.+
T Consensus       325 ~~l~C~~~g~p~p~i~W~~~g~~i~~~~~~L~i~~  359 (388)
T 2v5m_A          325 AVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIES  359 (388)
T ss_dssp             EEEEEEEEEECCCEEEEEETTEECSCCSSEEEESS
T ss_pred             EEEEEEeccccCCeEEEEECCEECccCCCEEEEec
Confidence            99999999999999999999999976543 55543

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=100.00  E-value=3.3e-41  Score=363.44  Aligned_cols=350  Identities=12%  Similarity=0.124  Sum_probs=217.5

Q ss_pred             eecCCeeeEEEEeeeccccCCC-CCceeeEEccCCccccccc----CCCCCCCCCcCCCCCCcEEEEEEEeecCCCeeeE
Q psy14896        359 EQIDAGNYSCNVQSKVSDTGRN-GPFFPLKVFPHSNFQQLKF----PNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNW  433 (813)
Q Consensus       359 ~~~D~G~Y~C~a~n~~g~~~~~-s~~~~l~v~~~~~~~~~~~----~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W  433 (813)
                      ...|.|.|.|.+.+..+..... .......+...+.......    +..+-...+..|.+|+++.|.|.+.|.|.|.|.|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~c~~~p~~~~~~~~~~~v~V~~G~~v~L~C~v~g~P~p~i~W   82 (423)
T 3qs7_E            3 GNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLW   82 (423)
T ss_dssp             -----------------------------------------------------CEEEECSSCCEEEEEECSCCSSCEEEE
T ss_pred             ccCCCCeeEEEEEeccCCCccccccccchhhhCCHHHcCCccCCCCCcceeccccEEEecCCcEEEEEEEEcCCCCeEEE
Confidence            3568899999998774433221 1112212221111111111    1111122256799999999999999999999999


Q ss_pred             eecCCcCCCCceeccccceEEEcccccccceEEeCCCceEecccccccccCeEEEEEeeccCCCcEEEeeccccccceec
Q psy14896        434 TRRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVA  513 (813)
Q Consensus       434 ~~~~~~l~~~~~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~~  513 (813)
                      ++++..+.....+.                                                                  
T Consensus        83 ~~~~~~l~~~~~~~------------------------------------------------------------------   96 (423)
T 3qs7_E           83 VFKHSSLNCQPHFD------------------------------------------------------------------   96 (423)
T ss_dssp             EETTEEECCCCBC-------------------------------------------------------------------
T ss_pred             EECCCccCccceec------------------------------------------------------------------
Confidence            88876653211000                                                                  


Q ss_pred             cccCCCCCceEEeeCCeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEEeecccccccCCCceeccCCCceEEeCCC
Q psy14896        514 NLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPP  593 (813)
Q Consensus       514 ~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~  593 (813)
                            ...+.   ..+|.|.++ +.+|+|.|+|.|.|..|.. +..+.|.|..+|.+. ...+.....|..++|.|.+ 
T Consensus        97 ------~~~~~---~~sL~I~~v-~~~D~G~Y~C~a~N~~g~~-~~~~~l~V~~~p~~~-~~~p~~~~~~~~~~L~C~a-  163 (423)
T 3qs7_E           97 ------LQNRG---VVSMVILKM-TETQAGEYLLFIQSEATNY-TILFTVSIRNTLLYT-LRRPYFRKMENQDALVCIS-  163 (423)
T ss_dssp             ----------C---EEEEEESSC-CSSSCSEEEEEEEC--CEE-EEEEEEEEC-----C-EEEEEEEECSSSSCEEEEE-
T ss_pred             ------cccce---EEEEEEeec-CcccCEEEEEEEEcCCCcE-EEEEEEEEecCcccc-ccCCcEeccCCceEEEEEE-
Confidence                  00010   125889997 9999999999999998876 445778887655442 2334455668889999999 


Q ss_pred             CCCCccEEEEccCCCCCcccCC-CeEEEeeCccEEEEeecccCCeeEEEEEEeeecCccccCceeeEEEccCCCcccccc
Q psy14896        594 TNYPGVNYYWARDYFPNFVEED-KRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKF  672 (813)
Q Consensus       594 ~~~p~~~v~W~k~~~~~~~~~~-~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~  672 (813)
                      .|.|.|.|+|+|++.+...... ....+.....+    +..+|+|.|+|.|.|..|....  ..+.|.|..+|...    
T Consensus       164 ~G~P~P~i~W~k~~~~~~~~~~~~~~~~~~~~~~----l~~~d~G~Y~C~A~N~~G~~~~--~~~~l~V~~~p~~~----  233 (423)
T 3qs7_E          164 ESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKV----LHELFGTDIRCCARNELGRECT--RLFTIDLNQTPQTT----  233 (423)
T ss_dssp             EESSCCEEEEEEC-------------CEEECCSE----ECCCCSSCEEEEEECSSCEEEE--ECEEEESSSCCCSS----
T ss_pred             eeecCCeEEEEECCCCCccccccccccccccceE----EecccCeEEEEEEEcCCCCcce--eeEEEEEecCCccC----
Confidence            8999999999999864211000 00001111111    1578999999999999986433  34667777665431    


Q ss_pred             CCCCCCCCCcCCCCCCeEEEEEEecC-CCCCeEEEEeCCcccCCCcee----------eecceEEEECCCCCCCCEEEEE
Q psy14896        673 PNNFPKTFPEAPKAGDKVRLECVAFG-YPVPSYNWTRRGSPLPRNAYF----------ENFNRILTIPNVKVEDQGEYIC  741 (813)
Q Consensus       673 p~~~~~~~~~~~~~G~~v~l~C~~~g-~P~p~i~W~k~g~~l~~~~~~----------~~~~~~L~i~~v~~~d~G~Y~C  741 (813)
                            .....+.+|++++|.|.+.| .|.|.|+|+|+|..+.....+          .....+|.|.+++.+|+|.|+|
T Consensus       234 ------~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  307 (423)
T 3qs7_E          234 ------LPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTC  307 (423)
T ss_dssp             ------TTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEE
T ss_pred             ------CCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEE
Confidence                  11356889999999999998 677999999999988665322          2223579999999999999999


Q ss_pred             EEEcCCCceEEEEEEEEEcCCcccccC--CceeecCCCeEEEEEEEcccCCceEEEEECCEeccccc
Q psy14896        742 RASNDRSALESSVTISIQAEPNFTIPL--TDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELGHQMT  806 (813)
Q Consensus       742 ~a~N~~G~~~~~~~l~V~~~P~~~~~~--~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~g~~l~~~~  806 (813)
                      .|.|.   .+.++.|.|..+|.+...+  ....+.+|+++.|.|.+.|.|+|.|+|+|||++|..+.
T Consensus       308 ~A~N~---~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~  371 (423)
T 3qs7_E          308 SSSKH---PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQ  371 (423)
T ss_dssp             EETTE---EEEEEEEEEESSCEEEEC---CEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBC
T ss_pred             EEecC---CCceEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEEEEcCCCeEEEEECCEECCCcc
Confidence            99998   8889999999999876543  45678899999999999999999999999999997764

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=100.00  E-value=6.1e-38  Score=333.69  Aligned_cols=313  Identities=13%  Similarity=0.136  Sum_probs=226.0

Q ss_pred             ceeecCCCeEEEecCCCCCCcceEEEeeccccccc------------cCCccEEEcc------CccEEEeeeeecCCeee
Q psy14896        305 EIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFV------------EEDKRVFVSY------DGALYFSALEQIDAGNY  366 (813)
Q Consensus       305 ~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~------------~~~~~~~~~~------~~~L~i~~v~~~D~G~Y  366 (813)
                      ..+.+|+.++|.|.+ .+.|.+.+.|+|++..+..            ....|+.+..      +.+|.|.+++.+|+|.|
T Consensus         4 v~~~~G~~v~L~C~~-~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   82 (363)
T 1wio_A            4 VLGKKGDTVELTCTA-SQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   82 (363)
T ss_dssp             EEEETTSCEEECCCC-TTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEEE
T ss_pred             EEEeCCCeEEEEEEe-cCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEEE
Confidence            356789999999996 5889999999999864221            1234554432      45799999999999999


Q ss_pred             EEEEeeeccccCCCCCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEEEEeecCCCeeeEeecCCcCCCCcee
Q psy14896        367 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF  446 (813)
Q Consensus       367 ~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~~~~l~~~~~~  446 (813)
                      +|.|.|..+       .+.|.|....     ..|       ...+.+|+.+.|.|.+.+.                    
T Consensus        83 ~C~~~n~~~-------~~~l~V~~~~-----~~~-------~~~v~~G~~v~l~C~~~~~--------------------  123 (363)
T 1wio_A           83 ICEVEDQKE-------EVQLLVFGLT-----ANS-------DTHLLQGQSLTLTLESPPG--------------------  123 (363)
T ss_dssp             EEEETTEEE-------EEEEEEEEEE-----ESS-------CSSEESBSCEEEEEECCTT--------------------
T ss_pred             EEEEEECCC-------cEEEEEEeCC-----CCC-------ceEEecCCCEEEEEEcCCC--------------------
Confidence            999998753       2566664310     000       1234455555555555444                    


Q ss_pred             ccccceEEEcccccccceEEeCCCceEecccccccccCeEEEEEeeccCCCcEEEeeccccccceeccccCCCCCceEEe
Q psy14896        447 ENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL  526 (813)
Q Consensus       447 ~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~  526 (813)
                                                                      |.|.+.|+|+|..                ...
T Consensus       124 ------------------------------------------------p~~~v~W~~~~~~----------------~~~  139 (363)
T 1wio_A          124 ------------------------------------------------SSPSVQCRSPRGK----------------NIQ  139 (363)
T ss_dssp             ------------------------------------------------CCCCEEEECSSSC----------------EEE
T ss_pred             ------------------------------------------------CCCeEEEEcCCCc----------------ccc
Confidence                                                            4445555555421                123


Q ss_pred             eCCeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEEeecccccccCCCceeccCCCceEEeCCCCC-----CCccEE
Q psy14896        527 SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTN-----YPGVNY  601 (813)
Q Consensus       527 ~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-----~p~~~v  601 (813)
                      ..+.|.|.++ ..+|+|.|+|.|.|..+.. ...+.+.|..+|...   ....+.+|+.++|.|.+ .+     +|.+.|
T Consensus       140 ~~~~L~i~~v-~~~d~G~Y~C~a~~~~~~~-~~~~~l~v~~~p~~~---~~~~~~~G~~v~l~C~~-~~~~~~~~P~p~i  213 (363)
T 1wio_A          140 GGKTLSVSQL-ELQDSGTWTCTVLQNQKKV-EFKIDIVVLAFQKAS---SIVYKKEGEQVEFSFPL-AFTVEKLTGSGEL  213 (363)
T ss_dssp             ESSEEEECSB-CGGGCEECEEEEEETTEEE-EECCEECEECCSCSE---EEEEEETBCCEEEECCC-CCCCCSSCEEEEE
T ss_pred             cceEEEEeeC-ChhcCCEEEEEEecCCCeE-EEEEEEEEecCCCCC---CceEEecCCEEEEEEEE-ecccccCCCceeE
Confidence            5578999996 9999999999999986665 444667776555432   34557789999999988 45     789999


Q ss_pred             EEccCCCCCccc------CCCeEEEe-----------e--CccEEEEeecccCCeeEEEEEEee--ecCccccCceeeEE
Q psy14896        602 YWARDYFPNFVE------EDKRVFVS-----------Y--DGALYFSALEQIDAGNYSCNVQSK--VSDTGRNGPFFPLK  660 (813)
Q Consensus       602 ~W~k~~~~~~~~------~~~~~~~~-----------~--~~~L~i~~~~~~d~G~Y~C~a~n~--~g~~~~~~~~~~l~  660 (813)
                      +|+|+|.++...      .+.++.+.           .  .++|.|.++..+|+|.|+|.|.|.  .|...   ..+.|.
T Consensus       214 ~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~---~~~~l~  290 (363)
T 1wio_A          214 WWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLH---QEVNLV  290 (363)
T ss_dssp             EEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEE---EEEEEE
T ss_pred             EEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEE---EEEeEE
Confidence            999999864331      13444442           2  337999999999999999999999  87543   335666


Q ss_pred             EccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCe--EEEEeCCcccCCCceeeecceEEEECCCCCCCCEE
Q psy14896        661 VFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPS--YNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGE  738 (813)
Q Consensus       661 v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~--i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~  738 (813)
                      |..      +               .|+.++|.|.+.|.|+|.  |+|+|+|..+..       ...|.|.++..+|+|.
T Consensus       291 V~~------v---------------~g~~~~l~C~~~g~p~p~~~i~W~~~~~~~~~-------~~~l~i~~v~~~d~G~  342 (363)
T 1wio_A          291 VMR------A---------------TQLQKNLTCEVWGPTSPKLMLSLKLENKEAKV-------SKREKAVWVLNPEAGM  342 (363)
T ss_dssp             EEE------E---------------CCCSSSEEEEEESSCCTTCCEEEECSSSSCSE-------EESSSEEEESSCCSEE
T ss_pred             EEE------e---------------cCCCeeEEEEEccccCCCccEEEEeCCCceee-------eeeeeeeeecccccee
Confidence            651      1               188899999999999998  999999998864       3457889999999999


Q ss_pred             EEEEEEcCCCceEEEEEEEEE
Q psy14896        739 YICRASNDRSALESSVTISIQ  759 (813)
Q Consensus       739 Y~C~a~N~~G~~~~~~~l~V~  759 (813)
                      |+|.|.|. |....+..|.|.
T Consensus       343 Y~C~a~~~-~~~~~~~~~~V~  362 (363)
T 1wio_A          343 WQCLLSDS-GQVLLESNIKVL  362 (363)
T ss_dssp             EEEEECSS-SSCCEEEEEEEC
T ss_pred             EEEEEecC-CeEEEecceEec
Confidence            99999975 677777777763

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=100.00  E-value=4.9e-36  Score=318.96  Aligned_cols=286  Identities=15%  Similarity=0.112  Sum_probs=219.6

Q ss_pred             ccccCeEEEEEeeccCCCcEEEeeccccccce-ec---cccCCCCCceEEee-------CCeEEEeCCCCCCCCceEEEE
Q psy14896        480 SILNDITLSCYAGGYPNPSYEWFKEDYVQDRL-VA---NLIDPLSDKRFTLS-------GGNLIINDPRQVEDRGSYHCK  548 (813)
Q Consensus       480 ~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~-~~---~~~~~~~~~~~~~~-------~~~l~i~~~~~~~d~G~Y~C~  548 (813)
                      .+|+.++|.|.+.+.|.+.|.|+|++..+-.. ..   .........++.+.       +.+|.|.++ ..+|+|.|+|.
T Consensus         7 ~~G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~   85 (363)
T 1wio_A            7 KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNL-KIEDSDTYICE   85 (363)
T ss_dssp             ETTSCEEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSC-CGGGCEEEEEE
T ss_pred             eCCCeEEEEEEecCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCC-CHHHCEEEEEE
Confidence            68999999999999999999999998531100 00   00011223444432       457999997 99999999999


Q ss_pred             EEcCceeEEeecEEEEEeecccccccCCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCccEEE
Q psy14896        549 ASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYF  628 (813)
Q Consensus       549 a~n~~g~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i  628 (813)
                      |.|..+     .+.|.|...+   . .....+.+|+.++|.|.+ .+.|.+.|+|+|++...         ...+++|.|
T Consensus        86 ~~n~~~-----~~~l~V~~~~---~-~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~---------~~~~~~L~i  146 (363)
T 1wio_A           86 VEDQKE-----EVQLLVFGLT---A-NSDTHLLQGQSLTLTLES-PPGSSPSVQCRSPRGKN---------IQGGKTLSV  146 (363)
T ss_dssp             ETTEEE-----EEEEEEEEEE---E-SSCSSEESBSCEEEEEEC-CTTCCCCEEEECSSSCE---------EEESSEEEE
T ss_pred             EEECCC-----cEEEEEEeCC---C-CCceEEecCCCEEEEEEc-CCCCCCeEEEEcCCCcc---------cccceEEEE
Confidence            999754     3555555422   1 122456889999999999 67899999999998541         335678999


Q ss_pred             EeecccCCeeEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecC-----CCCCe
Q psy14896        629 SALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFG-----YPVPS  703 (813)
Q Consensus       629 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g-----~P~p~  703 (813)
                      .+++.+|+|.|+|.|.|..+...   ..+.|.|...|...           ....+.+|+.++|.|.+.|     .|.|.
T Consensus       147 ~~v~~~d~G~Y~C~a~~~~~~~~---~~~~l~v~~~p~~~-----------~~~~~~~G~~v~l~C~~~~~~~~~~P~p~  212 (363)
T 1wio_A          147 SQLELQDSGTWTCTVLQNQKKVE---FKIDIVVLAFQKAS-----------SIVYKKEGEQVEFSFPLAFTVEKLTGSGE  212 (363)
T ss_dssp             CSBCGGGCEECEEEEEETTEEEE---ECCEECEECCSCSE-----------EEEEEETBCCEEEECCCCCCCCSSCEEEE
T ss_pred             eeCChhcCCEEEEEEecCCCeEE---EEEEEEEecCCCCC-----------CceEEecCCEEEEEEEEecccccCCCcee
Confidence            99999999999999998754432   23456666544321           2256789999999998887     88999


Q ss_pred             EEEEeCCcccCC--------Cceeee------------c--ceEEEECCCCCCCCEEEEEEEEcC--CCceEEEEEEEEE
Q psy14896        704 YNWTRRGSPLPR--------NAYFEN------------F--NRILTIPNVKVEDQGEYICRASND--RSALESSVTISIQ  759 (813)
Q Consensus       704 i~W~k~g~~l~~--------~~~~~~------------~--~~~L~i~~v~~~d~G~Y~C~a~N~--~G~~~~~~~l~V~  759 (813)
                      |+|+|+|..+..        +.++..            .  ...|.|.+++.+|+|.|+|.|.|.  .|..+..+.|.|.
T Consensus       213 i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~  292 (363)
T 1wio_A          213 LWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVM  292 (363)
T ss_dssp             EEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEE
T ss_pred             EEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEE
Confidence            999999998876        333211            2  348999999999999999999999  9999999999998


Q ss_pred             cCCcccccCCceeecCCCeEEEEEEEcccCCce--EEEEECCEeccccccccccc
Q psy14896        760 AEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVT--YSWFRNGELGHQMTDLLLKA  812 (813)
Q Consensus       760 ~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~--v~W~k~g~~l~~~~~~~i~~  812 (813)
                      ..             .|++++|.|.+.|.|+|.  |.|+|||++|..+.++.|.+
T Consensus       293 ~v-------------~g~~~~l~C~~~g~p~p~~~i~W~~~~~~~~~~~~l~i~~  334 (363)
T 1wio_A          293 RA-------------TQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAVW  334 (363)
T ss_dssp             EE-------------CCCSSSEEEEEESSCCTTCCEEEECSSSSCSEEESSSEEE
T ss_pred             Ee-------------cCCCeeEEEEEccccCCCccEEEEeCCCceeeeeeeeeee
Confidence            21             188999999999999998  99999999999888877754

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=100.00  E-value=3.4e-35  Score=321.57  Aligned_cols=378  Identities=18%  Similarity=0.201  Sum_probs=235.4

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccCCC----CeEEEeecc--ccccccc--ccccccCCCccEEee----CCeEE
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPN----PSYEWFKED--YVQDRLV--ANLIDPLSDKRFTLS----GGNLI  259 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~----p~v~W~k~g--~~l~~~~--~~~~~~~~~~~~~~~----~~~l~  259 (813)
                      |+..|.++.+.+|     ++++|.|.+.+.|.    +.|.|||++  ..+....  ..........++...    ..+|.
T Consensus         4 v~~~p~~~~v~~G-----~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~   78 (438)
T 1qgc_4            4 LTQSPASLAVSLG-----QRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLT   78 (438)
T ss_dssp             EEEECSEEEECTT-----SCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEE
T ss_pred             eEecCCeEEeeCC-----CCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEE
Confidence            5556778888777     67999999998876    489999984  3221000  000001123455433    23688


Q ss_pred             EcCCccccCCeeEEEEeecCceeeEeeeeEEeeee---ecccccCCCCceeecCCCeEEEecCCCCCCcc-eEEEeeccc
Q psy14896        260 INDPRQVEDRGSYHCKASNKFGSIISESVQLAFGF---IGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGV-NYYWARDYF  335 (813)
Q Consensus       260 i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~---~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~-~v~W~k~~~  335 (813)
                      |.+. +.+|+|.|+|.|.|..+...+..+.|.|..   +|.+.+.........|+.++|.|.+.++.|.+ +|+|+|||.
T Consensus        79 I~~v-~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~  157 (438)
T 1qgc_4           79 IDPV-EADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGS  157 (438)
T ss_dssp             ESSC-CGGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTE
T ss_pred             eCCC-cCcCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCE
Confidence            8885 899999999999998875445556666643   33333333333444677889999975557877 999999998


Q ss_pred             cccccCCc--cEEEcc------CccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCcccccccCCCCCCCC
Q psy14896        336 PNFVEEDK--RVFVSY------DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTF  407 (813)
Q Consensus       336 ~~~~~~~~--~~~~~~------~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~  407 (813)
                      ++......  +.....      .+.|.|.++..+|+|.|+|.|.|..+..     .+.+.+........+..|      .
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~-----~~~~~~~~~~~~~~~~~~------~  226 (438)
T 1qgc_4          158 ERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS-----PIVKSFNRNECEVMLVES------G  226 (438)
T ss_dssp             EECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSS-----CEEEEEETTC-CCEEEEE------C
T ss_pred             EcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCC-----ceecccccccceeEEecC------C
Confidence            74322000  111111      2369999999999999999999987642     234444322111111111      2


Q ss_pred             CcCCCCCCcEEEEEEEeecC--CCeeeEeec--CCcCCCCceeccccceEEEcccccccceEEeCCCceEeccccccccc
Q psy14896        408 PEAPKAGDKVRLECVAFGYP--VPSYNWTRR--GSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILN  483 (813)
Q Consensus       408 ~~~v~~g~~~~l~C~~~g~p--~p~i~W~~~--~~~l~~~~~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~  483 (813)
                      ...+.+|+.+.|.|.+.|.|  .+.+.|+|+  +..+..-..+...                                  
T Consensus       227 ~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~----------------------------------  272 (438)
T 1qgc_4          227 GGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSG----------------------------------  272 (438)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTT----------------------------------
T ss_pred             ceEEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeec----------------------------------
Confidence            34689999999999999988  679999997  4332100000000                                  


Q ss_pred             CeEEEEEeeccCCCcEEEeeccccccceeccccCCCCCceEEee------CCeEEEeCCCCCCCCceEEEEEEcCcee--
Q psy14896        484 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS------GGNLIINDPRQVEDRGSYHCKASNKFGS--  555 (813)
Q Consensus       484 ~~~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~i~~~~~~~d~G~Y~C~a~n~~g~--  555 (813)
                                          ++..       ........++.+.      ..+|.|.++ +.+|+|.|+|.|.|..+.  
T Consensus       273 --------------------~~~~-------~~~~~~~~r~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~n~~~~~~  324 (438)
T 1qgc_4          273 --------------------GTYT-------YYPDSVKGRFTISRDNAKNTLYLQMSSL-RSADTAMYYCVRREDGGDEG  324 (438)
T ss_dssp             --------------------SCCE-------ECCGGGTTTEEEEEETTTTEEEEEECSC-CGGGCCEEEEEECCSSSCCC
T ss_pred             --------------------CCce-------ecCcccCCcEEEEeecCCCeEEEEECCC-ChhhCEEEEEEEEccCCCcc
Confidence                                0000       0000011222221      237999997 999999999999985441  


Q ss_pred             --EEeecEEEEEee----cccccccCCCceeccCCCceEEeCCCCCC-Ccc-EEEEccCCCCCcccCCCeEEEe----eC
Q psy14896        556 --IISESVQLAFGF----IGEFNLKRAPEIGNQNWGKAMFCDPPTNY-PGV-NYYWARDYFPNFVEEDKRVFVS----YD  623 (813)
Q Consensus       556 --~~s~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~~-p~~-~v~W~k~~~~~~~~~~~~~~~~----~~  623 (813)
                        .....+.+.|..    +|.+........+..|+.++|.|.+ .|. |.+ .|+|+|+|.++...........    ..
T Consensus       325 ~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~-~g~~P~~~~v~W~~~g~~~~~~~~~~~~~~g~~~~~  403 (438)
T 1qgc_4          325 FAYWGQGTVVTVSAAKTTPPSVYPLAPGSAAAAASMVTLGCLV-KGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLS  403 (438)
T ss_dssp             CCSBCCCEEEEECSSCCBCCEEEEECCCGGGCCSSEEEEEEEE-ESCBSSCCEEEEGGGTCCSSEEECCCEEETTEEEEE
T ss_pred             ceeeCCCEEEEEecCCCCCCeEEEcCcccccccCCcEEEEEEe-ccccCCCcEEEEecCCCCCceeecCccccCCcEEEE
Confidence              112335666652    3333333334456679999999999 565 877 9999999987432211222111    11


Q ss_pred             ccEEEEeecccCCeeEEEEEEeeecCc
Q psy14896        624 GALYFSALEQIDAGNYSCNVQSKVSDT  650 (813)
Q Consensus       624 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~  650 (813)
                      ..|.|.++..+| |.|+|.|.|..|..
T Consensus       404 s~L~i~~~~~~d-g~Y~C~a~n~~g~~  429 (438)
T 1qgc_4          404 SSVTVPSSTWPS-ETVTCNVAHPASST  429 (438)
T ss_dssp             EEEEEEEEHHHH-SCCEEEEEEGGGTE
T ss_pred             EEEEEehhhcCC-ceEEEEEEeCCCCc
Confidence            258999999999 99999999999863

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=100.00  E-value=3.5e-34  Score=293.66  Aligned_cols=258  Identities=26%  Similarity=0.351  Sum_probs=205.5

Q ss_pred             ccccCeEEEEEeeccCCCcEEEeeccccccceeccccCCCCCceEEee--CCeEEEeCCCCCCCCceEEEEEEcCceeEE
Q psy14896        480 SILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS--GGNLIINDPRQVEDRGSYHCKASNKFGSII  557 (813)
Q Consensus       480 ~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~  557 (813)
                      .+|+.++|.|.+.|.|.+.|.|+|+|..+.        .....+....  ..+|.|.++ ..+|+|.|+|.|.|..|.. 
T Consensus        18 ~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~--------~~~~~~~~~~~~~~~L~i~~v-~~~d~G~Y~C~~~n~~g~~-   87 (284)
T 2rik_A           18 ALGESGTFKCHVTGTAPIKITWAKDNREIR--------PGGNYKMTLVENTATLTVLKV-TKGDAGQYTCYASNVAGKD-   87 (284)
T ss_dssp             ETTCCEEEEEEEESSSCCEEEEEETTEECC--------SSSSEEEEEETTEEEEEESSC-CGGGCEEEEEEEEETTEEE-
T ss_pred             cCCCcEEEEEEEEcCCCCEEEEEECCEECc--------CCCcEEEEEcCCEEEEEEecC-CcccCEEEEEEEEECCceE-
Confidence            789999999999999999999999996542        1222222222  358999997 9999999999999998886 


Q ss_pred             eecEEEEEeecccccccCC-CceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEe-eCccEEEEeecccC
Q psy14896        558 SESVQLAFGFIGEFNLKRA-PEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVS-YDGALYFSALEQID  635 (813)
Q Consensus       558 s~~~~l~v~~~p~~~~~~~-~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d  635 (813)
                      +..+.|.|..+|.+..... ...+.+|+.++|.|.+ .+.|.+.+.|+|++.++......+.... ..+.|.|.+++.+|
T Consensus        88 ~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~-~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d  166 (284)
T 2rik_A           88 SCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKI-GGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVED  166 (284)
T ss_dssp             EEEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEE-ESSSCCEEEEEETTEECCCSSSEEEEEETTEEEEEECSCCGGG
T ss_pred             EEEEEEEccCCCcccccCCCceEecCCceEEEEEEE-eeeCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEECCCCccc
Confidence            5568888988887655443 3457889999999999 7889999999999976433322222222 23469999999999


Q ss_pred             CeeEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCC
Q psy14896        636 AGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPR  715 (813)
Q Consensus       636 ~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~  715 (813)
                      +|.|+|.|.|..|...   ..+.|.|..+|.+..        .+....+.+|++++|.|.+.|.|.|.|+|+|+|..+..
T Consensus       167 ~G~Y~C~a~n~~g~~~---~~~~l~V~~~p~~~~--------~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~  235 (284)
T 2rik_A          167 SGDYTCEAHNAAGSAS---SSTSLKVKEPPVFRK--------KPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRS  235 (284)
T ss_dssp             CEEEEEEEECSSCEEE---EEEEEEEECCCBCCS--------CCCCEEECTTCCEEEEEECBSSSCCEEEEEETTEEECB
T ss_pred             CEEEEEEEEcCCCcee---EEEEEEEecCCccee--------CCCcceecCCCeEEEEEEEEecCCCEEEEEECCEECcC
Confidence            9999999999987643   347888888776543        12235678999999999999999999999999999887


Q ss_pred             Cceee----ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896        716 NAYFE----NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ  759 (813)
Q Consensus       716 ~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  759 (813)
                      +.++.    .....|.|.+++.+|+|.|+|.|.|..|..+.++.|.|+
T Consensus       236 ~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  283 (284)
T 2rik_A          236 GKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK  283 (284)
T ss_dssp             TTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCCEEEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEc
Confidence            65432    223689999999999999999999999999999999986

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.9e-34  Score=298.60  Aligned_cols=264  Identities=21%  Similarity=0.375  Sum_probs=194.3

Q ss_pred             ccccCeEEEEEeeccCCCcEEEeeccccccceeccccCCCCCceEEe---eC---CeEEEeCCCCC-CCCceEEEEEEcC
Q psy14896        480 SILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL---SG---GNLIINDPRQV-EDRGSYHCKASNK  552 (813)
Q Consensus       480 ~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~---~~---~~l~i~~~~~~-~d~G~Y~C~a~n~  552 (813)
                      .+|+.++|.|.+.|.|.+.|.|+|+|..+.           ..++..   .+   ..|.|.++ .. +|+|.|+|.|.|.
T Consensus        19 ~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~-----------~~~~~~~~~~~~~~~~L~i~~~-~~~~D~G~Y~C~a~n~   86 (304)
T 2yd9_A           19 VSGGVASFVCQATGDPKPRVTWNKKGKKVN-----------SQRFETIEFDESAGAVLRIQPL-RTPRDENVYECVAQNS   86 (304)
T ss_dssp             ETTSCEEEEEEEECSSCCEEEEC------------------CTTEEEEEETTTTEEEEEECSC-CTTTTCSEEEEEEECS
T ss_pred             cCCCeEEEEEEEEEeCCCeEEEEECCEECC-----------CCceEEEEecCCCceEEEEecc-cccCCCeEEEEEEECC
Confidence            789999999999999999999999996541           112221   22   47999997 76 9999999999999


Q ss_pred             ceeEEeecEEEEEeec-------ccccccCCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCccc-CCCeEEEeeCc
Q psy14896        553 FGSIISESVQLAFGFI-------GEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVE-EDKRVFVSYDG  624 (813)
Q Consensus       553 ~g~~~s~~~~l~v~~~-------p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~-~~~~~~~~~~~  624 (813)
                      .|.. +..+.|.|..+       |.+...+....+..|+.++|.|.+ .|.|.+.|+|+|++.++... ...++....++
T Consensus        87 ~g~~-~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~-~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~  164 (304)
T 2yd9_A           87 VGEI-TVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAA-SGNPDPEITWFKDFLPVDPSASNGRIKQLRSG  164 (304)
T ss_dssp             SCEE-CCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEE-ECSSCCEEEEEETTEECCGGGGTTSEEECTTS
T ss_pred             CCeE-EEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEEC-ccCCCCeEEEEECCEECcCCCCcceEEeCCCe
Confidence            9884 55678888765       334444555667889999999999 78999999999999765432 22356667788


Q ss_pred             cEEEEeecccCCeeEEEEEEeeecCccccCceeeEEEc-cCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCe
Q psy14896        625 ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF-PHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPS  703 (813)
Q Consensus       625 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~-~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~  703 (813)
                      +|.|.+++.+|+|.|+|.|.|..|........+.+.+. .+|.+..        .+....+.+|++++|.|.+.|.|.|.
T Consensus       165 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~--------~~~~~~v~~G~~v~l~C~~~g~p~p~  236 (304)
T 2yd9_A          165 ALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSI--------LPMSHEIMPGGNVNITCVAVGSPMPY  236 (304)
T ss_dssp             CEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEE--------CCCCBCCCTTCCEEEEEEEEEESCCE
T ss_pred             EEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEe--------cCCceEEcCCCeEEEEEEEeeeCCCE
Confidence            99999999999999999999998865443233333332 2333221        12225688999999999999999999


Q ss_pred             EEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCCccccc
Q psy14896        704 YNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIP  767 (813)
Q Consensus       704 i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~~~~~  767 (813)
                      |+|+|+|..|.....+......|.|.++  +|+|.|+|.|.|..|..+.++.|.|..+|.+...
T Consensus       237 v~W~~~~~~l~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~  298 (304)
T 2yd9_A          237 VKWMQGAEDLTPEDDMPVGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVKSLPKAGTK  298 (304)
T ss_dssp             EEEEETTEECSCSSSCCBSEEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC----------
T ss_pred             EEEEECCEECCCcccccCCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEecCcccccc
Confidence            9999999999877665555567888876  6999999999999999999999999998877543

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=100.00  E-value=1.5e-34  Score=297.69  Aligned_cols=263  Identities=21%  Similarity=0.367  Sum_probs=213.0

Q ss_pred             ccccCeEEEEEeeccC-CCcEEEee-ccccccceeccccCCCCCceEEe-----eCCeEEEeCCCCCCCCceEEEEEEcC
Q psy14896        480 SILNDITLSCYAGGYP-NPSYEWFK-EDYVQDRLVANLIDPLSDKRFTL-----SGGNLIINDPRQVEDRGSYHCKASNK  552 (813)
Q Consensus       480 ~~g~~~~l~C~~~g~p-~~~v~W~k-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~~d~G~Y~C~a~n~  552 (813)
                      .+|+.+.|.|.+.+.| .+.|.|+| +|..+.        . ...++.+     ..++|.|.++ ..+|+|.|+|.|.|.
T Consensus        15 ~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~--------~-~~~~~~~~~~~~~~~~L~i~~~-~~~D~G~Y~C~~~n~   84 (291)
T 1qz1_A           15 SVGESKFFLCQVAGDAKDKDISWFSPNGEKLS--------P-NQQRISVVWNDDDSSTLTIYNA-NIDDAGIYKCVVTAE   84 (291)
T ss_dssp             ETTCCEEEEEEESSCCSCCEEEEECTTSCBCC--------S-SCSSEEEEEEETTEEEEEECSC-CGGGCEEEEEEEECT
T ss_pred             eCCCeEEEEEEeCCCCCCcEeEEECCCCeECc--------c-CCceEEEEEcCCCeEEEEEecC-CCCCCEEEEEEEEcC
Confidence            7899999999999987 68999999 775432        1 1223322     2358999997 999999999999999


Q ss_pred             ceeEEeecEEEEEeecccccccCCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCccEEEEeec
Q psy14896        553 FGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALE  632 (813)
Q Consensus       553 ~g~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~  632 (813)
                      .|...+..+.|.|..+|.+...+.+..+.+|+.++|.|.+ .+.|.+.+.|+|++.++......++....+++|.|.++.
T Consensus        85 ~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  163 (291)
T 1qz1_A           85 DGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDV-VSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIK  163 (291)
T ss_dssp             TSCEEEEEEEEEEECCSEEEECCSSEEEETTSCEEECCEE-ECSSCCEEEEEETTSCSSTTCCTTEEECTTSCEEETTCC
T ss_pred             CCCeeEEEEEEEeeccccccCCCCcccccCCCeEEEEEEe-ccCCCCEEEEEECCEEcccCCCceEEEccCCcEEEccCc
Confidence            8776667788888888877777777788999999999999 688999999999998866666677888888899999999


Q ss_pred             ccCCeeEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcc
Q psy14896        633 QIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSP  712 (813)
Q Consensus       633 ~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~  712 (813)
                      .+|+|.|+|.|.|..+... ....+.|.|..+|.+....      ......+.+|+.++|.|.+.|.|.|.|+|+|+|..
T Consensus       164 ~~d~G~Y~C~a~n~~~~~~-~~~~~~l~v~~~p~~~~~~------~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~  236 (291)
T 1qz1_A          164 KTDEGTYRCEGRILARGEI-NFKDIQVIVNVPPTVQARQ------SIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEP  236 (291)
T ss_dssp             GGGCEEEEEEEEEGGGTEE-EEEEEEEEEEEEEEEEESC------SEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEE
T ss_pred             cccCeEEEEEEEecCCCce-eeEEEEEEEecCCcccccc------cccccccccCceEEEEEEEEEeCCCcEEEEECCEE
Confidence            9999999999999775422 2234667777776554321      11224678999999999999999999999999999


Q ss_pred             cCCCc----ee--eecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEc
Q psy14896        713 LPRNA----YF--ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQA  760 (813)
Q Consensus       713 l~~~~----~~--~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  760 (813)
                      +..+.    ++  ......|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..
T Consensus       237 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  290 (291)
T 1qz1_A          237 IENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA  290 (291)
T ss_dssp             CCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CcCCCCCCcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEEc
Confidence            87654    22  23356899999999999999999999999999999999975

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=100.00  E-value=1e-35  Score=325.77  Aligned_cols=366  Identities=16%  Similarity=0.204  Sum_probs=237.5

Q ss_pred             CCceeecCCCeEEEecCCCCCCc----ceEEEeecc--cccc----------ccCCccEEEccC---ccEEEeeeeecCC
Q psy14896        303 APEIGNQNWGKAMFCDPPTNYPG----VNYYWARDY--FPNF----------VEEDKRVFVSYD---GALYFSALEQIDA  363 (813)
Q Consensus       303 ~~~~~~~~~~~~l~C~~~~~~p~----~~v~W~k~~--~~~~----------~~~~~~~~~~~~---~~L~i~~v~~~D~  363 (813)
                      ....+.+|+.++|.|.+ .+.|.    +.+.|+|++  ..+.          .....|+.+..+   .+|.|.+++.+|+
T Consensus         9 ~~~~v~~G~~v~L~C~~-~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   87 (438)
T 1qgc_4            9 ASLAVSLGQRATISCRA-SESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPVEADDV   87 (438)
T ss_dssp             SEEEECTTSCEEEEEEE-SSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CeEEeeCCCCEEEEEec-CCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCCCcCcCC
Confidence            44567889999999995 56665    599999974  3211          012345554432   3799999999999


Q ss_pred             eeeEEEEeeeccccCCCCCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEEEEee-cCCC-eeeEeecCCcCC
Q psy14896        364 GNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFG-YPVP-SYNWTRRGSPLP  441 (813)
Q Consensus       364 G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~~g-~p~p-~i~W~~~~~~l~  441 (813)
                      |.|+|.|.|..+..  .+..+.|.|........+..     ......+.+|+.+.|.|.+.| .|.| .|+|+|+|.++.
T Consensus        88 G~Y~C~a~n~~~~~--~~~~~~l~V~~~~~~P~v~~-----~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~  160 (438)
T 1qgc_4           88 ATYYCQQSNEVPLT--FGAGTKLDLKRADAAPTVSI-----FPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ  160 (438)
T ss_dssp             EEEEEEECSSTTCC--BCCCEEEEECCCCBCCEEEE-----ECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEEC
T ss_pred             eeEEEEEecCCCcc--ccCceeEEecCCCCCCEEEe-----cCCChhhccCCceEEEEEEccccCCCcEEEEEECCEEcC
Confidence            99999999977532  23346777753211111110     001112346788999999877 6777 889998887764


Q ss_pred             CCceeccccceEEEcccccccceEEeCCCceEecccccccccCeEEEEEeeccCCCcEEEeeccccccceeccccCCCCC
Q psy14896        442 RNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD  521 (813)
Q Consensus       442 ~~~~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~  521 (813)
                      ......                                                      .            .......
T Consensus       161 ~~~~~~------------------------------------------------------~------------~~~~~~~  174 (438)
T 1qgc_4          161 NGVLNS------------------------------------------------------W------------TDQDSKD  174 (438)
T ss_dssp             TTEEEE------------------------------------------------------E------------ECCCTTT
T ss_pred             CCceec------------------------------------------------------c------------ccccCCC
Confidence            331000                                                      0            0000111


Q ss_pred             ceEEeeCCeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEEe--ecccccccCCCceeccCCCceEEeCCCCCCC--
Q psy14896        522 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFG--FIGEFNLKRAPEIGNQNWGKAMFCDPPTNYP--  597 (813)
Q Consensus       522 ~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~--~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p--  597 (813)
                      ..+. ..+.|.|.++ ..+|+|.|+|.|.|..|..   .+.+.+.  .++.....+....+.+|+.++|.|.+ .|.|  
T Consensus       175 ~~~~-~~~~L~i~~~-~~~d~G~Y~C~a~n~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~-~g~p~~  248 (438)
T 1qgc_4          175 STYS-MSSTLTLTKD-EYERHNSYTCEATHKTSTS---PIVKSFNRNECEVMLVESGGGLVKPGGSLKLSCTA-SGFIFN  248 (438)
T ss_dssp             CCEE-EEEEEEEEHH-HHHTCCEEEEEEEETTCSS---CEEEEEETTC-CCEEEEECCEEECTTCCEEEEEEE-ESSCGG
T ss_pred             CcEE-EEEEEEEeCc-ccCCCCeEEEEEEecccCC---ceecccccccceeEEecCCceEEecCCcEEEEEEE-cccccC
Confidence            1221 2457899986 8899999999999987763   1223332  12222223445668899999999999 6777  


Q ss_pred             ccEEEEccC--CCCCcc---------------cCCCeEEEeeC-----ccEEEEeecccCCeeEEEEEEeeecC--cccc
Q psy14896        598 GVNYYWARD--YFPNFV---------------EEDKRVFVSYD-----GALYFSALEQIDAGNYSCNVQSKVSD--TGRN  653 (813)
Q Consensus       598 ~~~v~W~k~--~~~~~~---------------~~~~~~~~~~~-----~~L~i~~~~~~d~G~Y~C~a~n~~g~--~~~~  653 (813)
                      .+.|.|+|+  +.....               ....++.+..+     .+|.|.+++.+|+|.|+|.|.|..+.  ....
T Consensus       249 ~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~  328 (438)
T 1qgc_4          249 RCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYW  328 (438)
T ss_dssp             GSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSB
T ss_pred             CcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCCccceee
Confidence            679999997  432110               12345655543     26999999999999999999995541  1111


Q ss_pred             CceeeEEEccC----CCccccccCCCCCCCCCcCCCCCCeEEEEEEecCC-CCC-eEEEEeCCcccCCCc--ee-ee---
Q psy14896        654 GPFFPLKVFPH----SNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGY-PVP-SYNWTRRGSPLPRNA--YF-EN---  721 (813)
Q Consensus       654 ~~~~~l~v~~~----p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~-P~p-~i~W~k~g~~l~~~~--~~-~~---  721 (813)
                      .....|.|...    |.+..  .+      ....+.+|+.++|.|.+.|. |.| .|+|+|+|..+....  .. ..   
T Consensus       329 ~~~~~l~V~~~~~~~P~v~~--~~------~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~~~~~g~~  400 (438)
T 1qgc_4          329 GQGTVVTVSAAKTTPPSVYP--LA------PGSAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLY  400 (438)
T ss_dssp             CCCEEEEECSSCCBCCEEEE--EC------CCGGGCCSSEEEEEEEEESCBSSCCEEEEGGGTCCSSEEECCCEEETTEE
T ss_pred             CCCEEEEEecCCCCCCeEEE--cC------cccccccCCcEEEEEEeccccCCCcEEEEecCCCCCceeecCccccCCcE
Confidence            12356777642    22111  11      11346789999999999997 888 999999998875321  11 11   


Q ss_pred             -cceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEE
Q psy14896        722 -FNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS  757 (813)
Q Consensus       722 -~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~  757 (813)
                       ..+.|+|.++..+| |.|+|.|.|..|.......|.
T Consensus       401 ~~~s~L~i~~~~~~d-g~Y~C~a~n~~g~~~~~~~i~  436 (438)
T 1qgc_4          401 TLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIV  436 (438)
T ss_dssp             EEEEEEEEEEEHHHH-SCCEEEEEEGGGTEEEEEECC
T ss_pred             EEEEEEEEehhhcCC-ceEEEEEEeCCCCcceeeecC
Confidence             12469999999889 999999999999877666554

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=100.00  E-value=7.5e-34  Score=292.36  Aligned_cols=263  Identities=22%  Similarity=0.359  Sum_probs=208.6

Q ss_pred             ccccCeEEEEEeeccCCCcEEEee-ccccccceeccccCCCCCceEEe--eC--CeEEEeCCCCCCCCceEEEEEEcCce
Q psy14896        480 SILNDITLSCYAGGYPNPSYEWFK-EDYVQDRLVANLIDPLSDKRFTL--SG--GNLIINDPRQVEDRGSYHCKASNKFG  554 (813)
Q Consensus       480 ~~g~~~~l~C~~~g~p~~~v~W~k-~~~~~~~~~~~~~~~~~~~~~~~--~~--~~l~i~~~~~~~d~G~Y~C~a~n~~g  554 (813)
                      .+|+.++|.|.+.|.|. .+.|+| +|..+.          ...++.+  .+  .+|.|.++ ..+|+|.|+|.|.|..|
T Consensus        17 ~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~----------~~~~~~~~~~~~~~~L~i~~~-~~~D~G~Y~C~~~n~~g   84 (291)
T 2wim_A           17 SVGESKFFTCTAIGEPE-SIDWYNPQGEKII----------STQRVVVQKEGVRSRLTIYNA-NIEDAGIYRCQATDAKG   84 (291)
T ss_dssp             ETTCCEEEEEEEESCCS-EEECBCTTCCBCC----------CBTTEEEEEETTEEEEEECSC-CGGGCEEEEEEEECSSS
T ss_pred             cCCCcEEEEEEEeCCCC-ceEEECCCCcCcc----------CCCcEEEecCCCEEEEEEccC-CcccCEEEEEEEecccC
Confidence            78999999999999885 899999 664321          1223322  22  37999997 99999999999999988


Q ss_pred             eEEeecEEEEEeecccccccCCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCccEEEEeeccc
Q psy14896        555 SIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQI  634 (813)
Q Consensus       555 ~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  634 (813)
                      ...+..+.|.|..+|.+.....+..+.+|+.++|.|.+ .+.|.+.+.|++++.++......++....+++|.|.++..+
T Consensus        85 ~~~~~~~~l~v~~~~~~~~~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~  163 (291)
T 2wim_A           85 QTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRV-SSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKS  163 (291)
T ss_dssp             CEEEEEEEEEEECCCBCCSCCCSEEEETTSCEEECCCC-BCSSCCEEEEECC----CBCCCSSEEECTTSCEEETTCCGG
T ss_pred             ceEEEEEEEEecCCcceEeCCCChhhcCCCCEEEEEEE-ccCCCCEEEEEECCccccccCCceEEEccCCCEEEEecchh
Confidence            87666788888888877777777788999999999999 78899999999999876555667888888899999999999


Q ss_pred             CCeeEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccC
Q psy14896        635 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLP  714 (813)
Q Consensus       635 d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~  714 (813)
                      |+|.|+|.|.|..+... ....+.+.|..+|.+...      .......+.+|+.++|.|.+.|.|.|.|+|+|+|..+.
T Consensus       164 d~G~Y~C~~~n~~~~~~-~~~~~~~~v~~~p~~~~~------~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~  236 (291)
T 2wim_A          164 DEGIYRCEGRVEARGEI-DFRDIIVIVNVPPAISMP------QKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIE  236 (291)
T ss_dssp             GCEEEEEEEEETTTTEE-EEEEEEEEEEBCCCCBCS------CSEEECCSSSCCEEEEECBCCCBSCCEEEEEETTEECC
T ss_pred             hCEEEEEEEEECCCCee-EEeeEEEEeccCCccccC------cccccceecCCCeEEEEEEeecCCCCeEEEEECCEECc
Confidence            99999999999875422 223456777777754321      11113567899999999999999999999999999987


Q ss_pred             CCcee--eecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCC
Q psy14896        715 RNAYF--ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEP  762 (813)
Q Consensus       715 ~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P  762 (813)
                      .+.++  ......|.|.++..+|+|.|+|.|.|..|..++++.|.|..+|
T Consensus       237 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~  286 (291)
T 2wim_A          237 ENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQH  286 (291)
T ss_dssp             CTTTEEECSTTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC----
T ss_pred             CCccEEEcCCccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEEec
Confidence            76544  2345789999999999999999999999999999999999775

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=100.00  E-value=1.3e-32  Score=282.97  Aligned_cols=279  Identities=19%  Similarity=0.318  Sum_probs=210.4

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCC-CCeEEEee-cccccccccccccccCCCccEEe-----eCCeEEEc
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYP-NPSYEWFK-EDYVQDRLVANLIDPLSDKRFTL-----SGGNLIIN  261 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P-~p~v~W~k-~g~~l~~~~~~~~~~~~~~~~~~-----~~~~l~i~  261 (813)
                      ||.|...|.+..+.+|     ++++|.|.+.|.| .+.|.|+| +|..+.         ....++..     .+++|.|.
T Consensus         2 ~~~v~~~p~~~~v~~G-----~~v~l~C~~~~~~~~~~i~W~~~~g~~~~---------~~~~~~~~~~~~~~~~~L~i~   67 (291)
T 1qz1_A            2 VLQVDIVPSQGEISVG-----ESKFFLCQVAGDAKDKDISWFSPNGEKLS---------PNQQRISVVWNDDDSSTLTIY   67 (291)
T ss_dssp             CCCEEEESSSEEEETT-----CCEEEEEEESSCCSCCEEEEECTTSCBCC---------SSCSSEEEEEEETTEEEEEEC
T ss_pred             CcceEecCCCceEeCC-----CeEEEEEEeCCCCCCcEeEEECCCCeECc---------cCCceEEEEEcCCCeEEEEEe
Confidence            5788889999988887     6699999999876 68999999 776552         12233332     13467887


Q ss_pred             CCccccCCeeEEEEeecCceeeEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccC
Q psy14896        262 DPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEE  341 (813)
Q Consensus       262 ~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~  341 (813)
                      +. +.+|+|.|+|.|.|..|...+..+.|.|..+|.+...+.+..+.+|+.+.|.|.+ .+.|.+.+.|++++.++....
T Consensus        68 ~~-~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~  145 (291)
T 1qz1_A           68 NA-NIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDV-VSSLPPTIIWKHKGRDVILKK  145 (291)
T ss_dssp             SC-CGGGCEEEEEEEECTTSCEEEEEEEEEEECCSEEEECCSSEEEETTSCEEECCEE-ECSSCCEEEEEETTSCSSTTC
T ss_pred             cC-CCCCCEEEEEEEEcCCCCeeEEEEEEEeeccccccCCCCcccccCCCeEEEEEEe-ccCCCCEEEEEECCEEcccCC
Confidence            75 8999999999999998766677888888877777777778889999999999996 577999999999999876667


Q ss_pred             CccEEEccCccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEE
Q psy14896        342 DKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC  421 (813)
Q Consensus       342 ~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C  421 (813)
                      ..++....++.|.|.++..+|+|.|+|.|.|..+... ....+.|.|..+|.+.....      .....+.+|+.+.|.|
T Consensus       146 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~-~~~~~~l~v~~~p~~~~~~~------~~~~~~~~g~~v~l~C  218 (291)
T 1qz1_A          146 DVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEI-NFKDIQVIVNVPPTVQARQS------IVNATANLGQSVTLVC  218 (291)
T ss_dssp             CTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEE-EEEEEEEEEEEEEEEEESCS------EEEEETTSCCCEEEEE
T ss_pred             CceEEEccCCcEEEccCccccCeEEEEEEEecCCCce-eeEEEEEEEecCCccccccc------ccccccccCceEEEEE
Confidence            7788888888999999999999999999999764322 22345666665544322111      1123577888888888


Q ss_pred             EEeecCCCeeeEeecCCcCCCCceeccccceEEEcccccccceEEeCCCceEecccccccccCeEEEEEeeccCCCcEEE
Q psy14896        422 VAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEW  501 (813)
Q Consensus       422 ~~~g~p~p~i~W~~~~~~l~~~~~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W  501 (813)
                      .+.|+|.|.+.|++++..+.....                                                        
T Consensus       219 ~~~g~p~p~i~W~~~g~~~~~~~~--------------------------------------------------------  242 (291)
T 1qz1_A          219 DADGFPEPTMSWTKDGEPIENEEE--------------------------------------------------------  242 (291)
T ss_dssp             EEEEESCCEEEEEETTEECCCC----------------------------------------------------------
T ss_pred             EEEEeCCCcEEEEECCEECcCCCC--------------------------------------------------------
Confidence            888888888888888776643210                                                        


Q ss_pred             eeccccccceeccccCCCCCceEEe--eCCeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEEe
Q psy14896        502 FKEDYVQDRLVANLIDPLSDKRFTL--SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFG  566 (813)
Q Consensus       502 ~k~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~  566 (813)
                                        ...++..  .+..|.|.++ ..+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus       243 ------------------~~~~~~~~~~~~~L~i~~v-~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~  289 (291)
T 1qz1_A          243 ------------------DDEKHIFSDDSSELTIRNV-DKNDEAEYVCIAENKAGEQ-DASIHLKVF  289 (291)
T ss_dssp             ------------------CCSSEEECTTSCEEEECSC-CGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             ------------------CCcceEEcCCCcEEEEEec-ChhcCEEEEEEEEeCCCce-EEEEEEEEE
Confidence                              0011211  2357999997 8999999999999999986 445677664

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=100.00  E-value=4.8e-32  Score=277.70  Aligned_cols=274  Identities=24%  Similarity=0.327  Sum_probs=202.7

Q ss_pred             CCCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEee--CCeEEEcCCcc
Q psy14896        188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS--GGNLIINDPRQ  265 (813)
Q Consensus       188 ~~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~  265 (813)
                      .||.|...|.+..+.+|     ++++|.|.+.|.|.+.|.|+|+|..+..        ....+....  +++|.|.+. +
T Consensus         4 ~pP~~~~~p~~~~~~~G-----~~v~l~C~~~g~p~~~v~W~~~~~~~~~--------~~~~~~~~~~~~~~L~i~~v-~   69 (284)
T 2rik_A            4 APPFFDLKPVSVDLALG-----ESGTFKCHVTGTAPIKITWAKDNREIRP--------GGNYKMTLVENTATLTVLKV-T   69 (284)
T ss_dssp             CCCEEEECCCCEEEETT-----CCEEEEEEEESSSCCEEEEEETTEECCS--------SSSEEEEEETTEEEEEESSC-C
T ss_pred             CCCEEEccccceEecCC-----CcEEEEEEEEcCCCCEEEEEECCEECcC--------CCcEEEEEcCCEEEEEEecC-C
Confidence            47899999999988887     6699999999999999999999987632        111122222  356788775 8


Q ss_pred             ccCCeeEEEEeecCceeeEeeeeEEeeeeecccccCCC-CceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCcc
Q psy14896        266 VEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRA-PEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKR  344 (813)
Q Consensus       266 ~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~-~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~  344 (813)
                      .+|+|.|+|.|.|..|.. +..+.|.|..+|.+..... ...+.+|+.+.|.|.+ .|.|.+.+.|+|++.++......+
T Consensus        70 ~~d~G~Y~C~~~n~~g~~-~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~-~g~p~~~v~W~~~~~~~~~~~~~~  147 (284)
T 2rik_A           70 KGDAGQYTCYASNVAGKD-SCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKI-GGSPEIKVLWYKDETEIQESSKFR  147 (284)
T ss_dssp             GGGCEEEEEEEEETTEEE-EEEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEE-ESSSCCEEEEEETTEECCCSSSEE
T ss_pred             cccCEEEEEEEEECCceE-EEEEEEEccCCCcccccCCCceEecCCceEEEEEEE-eeeCCCEEEEEECCEECcCCCcEE
Confidence            999999999999999986 7788999988877665544 3457889999999996 678999999999998754333323


Q ss_pred             EEEc-cCccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEEEE
Q psy14896        345 VFVS-YDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVA  423 (813)
Q Consensus       345 ~~~~-~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~  423 (813)
                      +... ..+.|.|.+++.+|+|.|+|.|.|..|...   ..+.|.|..+|.+..        ......+.+|+.+.|.|.+
T Consensus       148 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~---~~~~l~V~~~p~~~~--------~~~~~~~~~g~~v~l~C~~  216 (284)
T 2rik_A          148 MSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSAS---SSTSLKVKEPPVFRK--------KPHPVETLKGADVHLECEL  216 (284)
T ss_dssp             EEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEE---EEEEEEEECCCBCCS--------CCCCEEECTTCCEEEEEEC
T ss_pred             EEEcCCEEEEEECCCCcccCEEEEEEEEcCCCcee---EEEEEEEecCCccee--------CCCcceecCCCeEEEEEEE
Confidence            3222 234799999999999999999999887543   347788876654321        1223457788888888888


Q ss_pred             eecCCCeeeEeecCCcCCCCceeccccceEEEcccccccceEEeCCCceEecccccccccCeEEEEEeeccCCCcEEEee
Q psy14896        424 FGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFK  503 (813)
Q Consensus       424 ~g~p~p~i~W~~~~~~l~~~~~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k  503 (813)
                      .|+|.|.+.|++++..+.....+                                                         
T Consensus       217 ~g~p~~~v~W~~~~~~~~~~~~~---------------------------------------------------------  239 (284)
T 2rik_A          217 QGTPPFQVSWHKDKRELRSGKKY---------------------------------------------------------  239 (284)
T ss_dssp             BSSSCCEEEEEETTEEECBTTTE---------------------------------------------------------
T ss_pred             EecCCCEEEEEECCEECcCCCCE---------------------------------------------------------
Confidence            88888888888877665432110                                                         


Q ss_pred             ccccccceeccccCCCCCceEEee--CCeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEEe
Q psy14896        504 EDYVQDRLVANLIDPLSDKRFTLS--GGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFG  566 (813)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~  566 (813)
                                         .....  ...|.|.++ ..+|+|.|+|.|.|..|.... .+.|.|.
T Consensus       240 -------------------~~~~~~~~~~L~i~~v-~~~d~G~Y~C~a~N~~G~~~~-~~~l~V~  283 (284)
T 2rik_A          240 -------------------KIMSENFLTSIHILNV-DSADIGEYQCKASNDVGSYTC-VGSITLK  283 (284)
T ss_dssp             -------------------EEEEETTEEEEEECSC-CGGGCEEEEEEEEETTEEEEE-EEEEEEC
T ss_pred             -------------------EEEEcCCEEEEEEcCC-CcccCEEEEEEEEeCCCceeE-EEEEEEc
Confidence                               01111  147889997 899999999999999998744 3666653

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=100.00  E-value=4.5e-33  Score=289.58  Aligned_cols=279  Identities=19%  Similarity=0.211  Sum_probs=203.4

Q ss_pred             EeCCCceEecccccccccCeEEEEEeeccCCC-----cEEEeeccccccceecccc---CCCCCceEEe---------eC
Q psy14896        466 IKQPTDVVFDLSKRSILNDITLSCYAGGYPNP-----SYEWFKEDYVQDRLVANLI---DPLSDKRFTL---------SG  528 (813)
Q Consensus       466 ~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-----~v~W~k~~~~~~~~~~~~~---~~~~~~~~~~---------~~  528 (813)
                      +..|..+..     ..|+.++|.|.+.+.|.+     .|.|+|++...........   ......+...         .+
T Consensus         4 v~~P~~v~~-----~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~   78 (313)
T 4fqp_A            4 VQAPTQVPG-----FLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRN   78 (313)
T ss_dssp             EECCSEECC-----BTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCB
T ss_pred             EcCCCEEEE-----ecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccc
Confidence            344555444     789999999999987765     4899999865322111000   0011122221         23


Q ss_pred             CeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEEeecccccccCCCceeccCCCceEEeCCCCCCCccEEEEccCCC
Q psy14896        529 GNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYF  608 (813)
Q Consensus       529 ~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~  608 (813)
                      .+|.|.++ +.+|+|.|+|.+.+..+...+..+.|.+..+|.+........+..++.+.|.|.+..+.|.+.+.|++++.
T Consensus        79 ~sL~I~~v-~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~  157 (313)
T 4fqp_A           79 ASLRMFGL-RVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLG  157 (313)
T ss_dssp             CCEEECSC-CGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTC
T ss_pred             eEEEECcC-ChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCc
Confidence            57999997 99999999999876544444556778777777766665566667777888999886789999999999987


Q ss_pred             CCcccCCCeEEEeeCc------cEEEEeecccCCeeEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCc
Q psy14896        609 PNFVEEDKRVFVSYDG------ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPE  682 (813)
Q Consensus       609 ~~~~~~~~~~~~~~~~------~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~  682 (813)
                      ++  ....+.....++      .|.|..+..+|+|.|+|.|.|..+.... ...+.|.|.++|.+...       .....
T Consensus       158 ~~--~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~-~~~~~l~V~~~P~v~~~-------~~~~~  227 (313)
T 4fqp_A          158 GM--PNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQ-LLTVNLTVYYPPEVSIS-------GYDNN  227 (313)
T ss_dssp             CE--EEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCE-EEEEECCBCEEEEEEEE-------CCCSC
T ss_pred             cc--cccceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccc-eeeeecccccCCccccc-------cccce
Confidence            53  222233333333      3888889999999999999998776433 23456677777754321       11124


Q ss_pred             CCCCCCeEEEEEEecCCCCC-eEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcC
Q psy14896        683 APKAGDKVRLECVAFGYPVP-SYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAE  761 (813)
Q Consensus       683 ~~~~G~~v~l~C~~~g~P~p-~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~  761 (813)
                      .+.+|+.++|.|.+.|+|.| .|+|+|+|.+|.......  +++|.|.+++.+|+|.|+|.|.|.+|..+.++.|.|..+
T Consensus       228 ~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~~~~~--~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~  305 (313)
T 4fqp_A          228 WYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQ--GAQLLIRPVDKPINTTLICNVTNALGARQAELTVQVKEG  305 (313)
T ss_dssp             EETTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTEEEE--TTEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEECC
T ss_pred             eecCCCeEEEEEEecCCCCCcEEEEEECCEECCCceEEe--CCEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEEeC
Confidence            46789999999999999999 699999999997664333  568999999999999999999999999999999999965


Q ss_pred             C
Q psy14896        762 P  762 (813)
Q Consensus       762 P  762 (813)
                      |
T Consensus       306 P  306 (313)
T 4fqp_A          306 P  306 (313)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=100.00  E-value=5.4e-32  Score=280.21  Aligned_cols=232  Identities=22%  Similarity=0.368  Sum_probs=168.4

Q ss_pred             CCCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeC---CeEEEcCCc
Q psy14896        188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSG---GNLIINDPR  264 (813)
Q Consensus       188 ~~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~  264 (813)
                      .||.|+..|.+..+.+|     ++++|.|.+.|.|.|.|.|+|+|..+..        .........+   .+|.|.+. 
T Consensus         5 ~~P~~~~~p~~~~v~~G-----~~v~l~C~~~g~p~~~i~W~k~g~~i~~--------~~~~~~~~~~~~~~~L~i~~~-   70 (304)
T 2yd9_A            5 EPPRFIKEPKDQIGVSG-----GVASFVCQATGDPKPRVTWNKKGKKVNS--------QRFETIEFDESAGAVLRIQPL-   70 (304)
T ss_dssp             CCCEEEECCCCEEEETT-----SCEEEEEEEECSSCCEEEEC-------C--------TTEEEEEETTTTEEEEEECSC-
T ss_pred             cCCeeeecCCceEecCC-----CeEEEEEEEEEeCCCeEEEEECCEECCC--------CceEEEEecCCCceEEEEecc-
Confidence            57999999999998887     6699999999999999999999986521        1111111123   35777775 


Q ss_pred             cc-cCCeeEEEEeecCceeeEeeeeEEeeeeec-------ccccCCCCceeecCCCeEEEecCCCCCCcceEEEeecccc
Q psy14896        265 QV-EDRGSYHCKASNKFGSIISESVQLAFGFIG-------EFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFP  336 (813)
Q Consensus       265 ~~-~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~-------~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~  336 (813)
                      +. +|+|.|+|.|.|..|.. +..+.|.|...+       .+...+....+.+|+.++|.|.+ .|.|.+.+.|+|++.+
T Consensus        71 ~~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~-~g~p~~~v~W~k~~~~  148 (304)
T 2yd9_A           71 RTPRDENVYECVAQNSVGEI-TVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAA-SGNPDPEITWFKDFLP  148 (304)
T ss_dssp             CTTTTCSEEEEEEECSSCEE-CCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEE-ECSSCCEEEEEETTEE
T ss_pred             cccCCCeEEEEEEECCCCeE-EEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEEC-ccCCCCeEEEEECCEE
Confidence            76 99999999999999985 778888887653       33344555677889999999996 7889999999999987


Q ss_pred             cccc-CCccEEEccCccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCcccccccCCCCCCCCCcCCCCCC
Q psy14896        337 NFVE-EDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGD  415 (813)
Q Consensus       337 ~~~~-~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~  415 (813)
                      +... ...++....++.|.|.+++.+|+|.|+|.|.|..|.....  .+.|.|........+..     ......+.+|+
T Consensus       149 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~--~~~l~v~~~~~~P~~~~-----~~~~~~v~~G~  221 (304)
T 2yd9_A          149 VDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSS--PANLYVRVQNVAPRFSI-----LPMSHEIMPGG  221 (304)
T ss_dssp             CCGGGGTTSEEECTTSCEEECSCCGGGCEEEEEEEEETTEEEECC--CEEEEEECCCEEEEEEE-----CCCCBCCCTTC
T ss_pred             CcCCCCcceEEeCCCeEEEEccCCcccCEEEEEEEEeCCCCEEec--cEEEEEEeeccCCcEEe-----cCCceEEcCCC
Confidence            5433 2346667778899999999999999999999988754322  24555543211111111     11235689999


Q ss_pred             cEEEEEEEeecCCCeeeEeecCCcCCC
Q psy14896        416 KVRLECVAFGYPVPSYNWTRRGSPLPR  442 (813)
Q Consensus       416 ~~~l~C~~~g~p~p~i~W~~~~~~l~~  442 (813)
                      .+.|.|.+.|+|.|.|.|++++..+..
T Consensus       222 ~v~l~C~~~g~p~p~v~W~~~~~~l~~  248 (304)
T 2yd9_A          222 NVNITCVAVGSPMPYVKWMQGAEDLTP  248 (304)
T ss_dssp             CEEEEEEEEEESCCEEEEEETTEECSC
T ss_pred             eEEEEEEEeeeCCCEEEEEECCEECCC
Confidence            999999999999999999999877643

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=100.00  E-value=9.5e-32  Score=276.61  Aligned_cols=278  Identities=21%  Similarity=0.298  Sum_probs=206.0

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEee-cccccccccccccccCCCccEEee-C---CeEEEcCC
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFK-EDYVQDRLVANLIDPLSDKRFTLS-G---GNLIINDP  263 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k-~g~~l~~~~~~~~~~~~~~~~~~~-~---~~l~i~~~  263 (813)
                      +|.|+..|.+..+.+|     ++++|.|.+.|.|. .|.|+| +|..+.          .+.++.+. +   .+|.|.+.
T Consensus         4 ~p~v~~~~~~~~v~~G-----~~v~l~C~~~~~p~-~v~W~~~~g~~~~----------~~~~~~~~~~~~~~~L~i~~~   67 (291)
T 2wim_A            4 LLQVTISLSKVELSVG-----ESKFFTCTAIGEPE-SIDWYNPQGEKII----------STQRVVVQKEGVRSRLTIYNA   67 (291)
T ss_dssp             CCEEEESCSEEEEETT-----CCEEEEEEEESCCS-EEECBCTTCCBCC----------CBTTEEEEEETTEEEEEECSC
T ss_pred             CceEEEeccceEecCC-----CcEEEEEEEeCCCC-ceEEECCCCcCcc----------CCCcEEEecCCCEEEEEEccC
Confidence            5889999999998888     66999999999774 999999 665442          22333332 2   36778775


Q ss_pred             ccccCCeeEEEEeecCceeeEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCc
Q psy14896        264 RQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDK  343 (813)
Q Consensus       264 ~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~  343 (813)
                       +.+|+|.|+|.|.|..|...+..+.|.|..++.+.....+..+.+|+.+.|.|.+ .+.|.+.+.|++++..+......
T Consensus        68 -~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~  145 (291)
T 2wim_A           68 -NIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRV-SSSPAPAVSWLYHNEEVTTISDN  145 (291)
T ss_dssp             -CGGGCEEEEEEEECSSSCEEEEEEEEEEECCCBCCSCCCSEEEETTSCEEECCCC-BCSSCCEEEEECC----CBCCCS
T ss_pred             -CcccCEEEEEEEecccCceEEEEEEEEecCCcceEeCCCChhhcCCCCEEEEEEE-ccCCCCEEEEEECCccccccCCc
Confidence             8999999999999999987677888888887877777778889999999999996 67899999999999887665677


Q ss_pred             cEEEccCccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEEEE
Q psy14896        344 RVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVA  423 (813)
Q Consensus       344 ~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~  423 (813)
                      ++.+..++.|.|.++..+|+|.|+|.|.|..+... ....+.|.|..+|.+....      ......+.+|+.+.|.|.+
T Consensus       146 ~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~-~~~~~~~~v~~~p~~~~~~------~~~~~~~~~g~~~~l~C~~  218 (291)
T 2wim_A          146 RFAMLANNNLQILNINKSDEGIYRCEGRVEARGEI-DFRDIIVIVNVPPAISMPQ------KSFNATAERGEEMTFSCRA  218 (291)
T ss_dssp             SEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEE-EEEEEEEEEEBCCCCBCSC------SEEECCSSSCCEEEEECBC
T ss_pred             eEEEccCCCEEEEecchhhCEEEEEEEEECCCCee-EEeeEEEEeccCCccccCc------ccccceecCCCeEEEEEEe
Confidence            88888889999999999999999999998764322 2223566666554322111      1113467888889999988


Q ss_pred             eecCCCeeeEeecCCcCCCCceeccccceEEEcccccccceEEeCCCceEecccccccccCeEEEEEeeccCCCcEEEee
Q psy14896        424 FGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFK  503 (813)
Q Consensus       424 ~g~p~p~i~W~~~~~~l~~~~~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k  503 (813)
                      .|+|.|.+.|++++..+.....+                                                         
T Consensus       219 ~g~p~p~v~W~~~g~~~~~~~~~---------------------------------------------------------  241 (291)
T 2wim_A          219 SGSPEPAISWFRNGKLIEENEKY---------------------------------------------------------  241 (291)
T ss_dssp             CCBSCCEEEEEETTEECCCTTTE---------------------------------------------------------
T ss_pred             ecCCCCeEEEEECCEECcCCccE---------------------------------------------------------
Confidence            88888888888887766432110                                                         


Q ss_pred             ccccccceeccccCCCCCceEEeeCCeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEEeecc
Q psy14896        504 EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIG  569 (813)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~p  569 (813)
                                         .....+++|.|.++ ..+|+|.|+|.|.|..|...+. +.|.|..++
T Consensus       242 -------------------~~~~~~~~L~i~~~-~~~d~G~Y~C~a~N~~G~~~~~-~~l~v~~~~  286 (291)
T 2wim_A          242 -------------------ILKGSNTELTVRNI-INSDGGPYVCRATNKAGEDEKQ-AFLQVFVQH  286 (291)
T ss_dssp             -------------------EECSTTCEEEEESC-CSTTCEEEEEEEEETTEEEEEE-EEEEC----
T ss_pred             -------------------EEcCCccEEEEeeC-CcccCEEEEEEEEECCCceeee-EEEEEEEec
Confidence                               00112457999997 8999999999999999998544 666665443

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=100.00  E-value=1.5e-32  Score=286.58  Aligned_cols=266  Identities=15%  Similarity=0.191  Sum_probs=193.3

Q ss_pred             ccccCeEEEEEeecc-CCCcEEEeeccccccceeccccCCCCCceEEeeCCeEEEeCCCCCCCCceEEEEEEcCceeEEe
Q psy14896        480 SILNDITLSCYAGGY-PNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIIS  558 (813)
Q Consensus       480 ~~g~~~~l~C~~~g~-p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s  558 (813)
                      .+|+.++|.|.+.+. |.+.|.|+|+|..+..        .....+.....+|.|.++ ..+|+|.|+|.|.|..|... 
T Consensus        19 ~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~--------~~~~~~~~~~~~L~i~~~-~~~d~G~Y~C~~~n~~g~~~-   88 (317)
T 2y25_A           19 TGECNVLLKCKVANIKKETHIVWYKDEREISV--------DEKHDFKDGICTLLITEF-SKKDAGIYEVILKDDRGKDK-   88 (317)
T ss_dssp             ETTTEEEEEEEEESCCTTCEEEEEETTEEECC--------SCC-----CCEEEEETTC-CSTTCSCEEEEEESSSCEEE-
T ss_pred             CCCCeEEEEEEEcCCCCCCEEEEEECCeEcCC--------CCcEEEECCeEEEEEccC-CcccCeEEEEEEECCCCcEE-
Confidence            789999999999987 7899999999966421        111122223358999997 99999999999999988763 


Q ss_pred             ecEEEEEeecccccccCCCceeccCCCceEEeCCCCC----------CCccEEEEccCCCCCcccCCCeEEEeeCc---c
Q psy14896        559 ESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTN----------YPGVNYYWARDYFPNFVEEDKRVFVSYDG---A  625 (813)
Q Consensus       559 ~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~----------~p~~~v~W~k~~~~~~~~~~~~~~~~~~~---~  625 (813)
                      ..+.|.|..+|.+........+..|+.+.|.|.+ .+          .|.+.++|+|++.++  ....++....++   +
T Consensus        89 ~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~c~~-~~~~l~c~~~~~~p~~~i~W~~~~~~~--~~~~~~~~~~~~~~~~  165 (317)
T 2y25_A           89 SRLKLVDEAFKELMMEVCKKIALSATDLKIQSTA-EGIQLYSFVTYYVEDLKVNWSHNGSAI--RYSDRVKTGVTGEQIW  165 (317)
T ss_dssp             EEECCSTHHHHHHHHHHHHHHHTCBCCCEEEECS-SEEEEEEEBSSCCSSCEEEEEESSSBC--CCCSSEEEEECSSEEE
T ss_pred             EEEEEEEecCccccccCCceecccCCCeEEEeec-cccEEEEEeccCCCCcEEEEEECCEEC--CCCCCeEEeccCCEEE
Confidence            3355555555544333334455678888888887 45          799999999999874  344555555444   3


Q ss_pred             EEEEeecccCCeeEEEEEEeeecCccccCceeeEEEccC------------CCccccccCCCCC-CCCCcCCCCCCeEEE
Q psy14896        626 LYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPH------------SNFQQLKFPNNFP-KTFPEAPKAGDKVRL  692 (813)
Q Consensus       626 L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~------------p~~~~~~~p~~~~-~~~~~~~~~G~~v~l  692 (813)
                      |.|.+++.+|+|.|+|.|.|..|....   .+.|.|...            +.......|.... .+....+.+|+.++|
T Consensus       166 L~i~~~~~~d~G~Y~C~a~n~~g~~~~---~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l  242 (317)
T 2y25_A          166 LQINEPTPNDKGKYVMELFDGKTGHQK---TVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNL  242 (317)
T ss_dssp             EEEESCCGGGCEEEEEEEECSSCEEEE---EEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETTSBBCE
T ss_pred             EEECcCCcccCeeEEEEEEeCCceEEE---EEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcCCEEEE
Confidence            999999999999999999998875432   244443210            0000000000000 122256789999999


Q ss_pred             EEEecCCCCCeEEEEeCCcccCCCceeeec-----ceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcC
Q psy14896        693 ECVAFGYPVPSYNWTRRGSPLPRNAYFENF-----NRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAE  761 (813)
Q Consensus       693 ~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~-----~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~  761 (813)
                      .|.+.|.|.|.|+|+|+|..+..+.++...     ...|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..|
T Consensus       243 ~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P  316 (317)
T 2y25_A          243 TCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP  316 (317)
T ss_dssp             EEEEECSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             EEEEecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEEEEEcC
Confidence            999999999999999999999776654322     248999999999999999999999999999999999854

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=100.00  E-value=1.1e-32  Score=301.82  Aligned_cols=371  Identities=13%  Similarity=0.131  Sum_probs=213.1

Q ss_pred             CCceeecCCCccccccEEEEeeeccCC--CCeEEEeecc--cccccccc-------cccccCCCccEEee------CCeE
Q psy14896        196 PTDVVFDLSKRSILNDITLSCYAGGYP--NPSYEWFKED--YVQDRLVA-------NLIDPLSDKRFTLS------GGNL  258 (813)
Q Consensus       196 p~~~~v~~g~~~~g~~v~l~C~~~g~P--~p~v~W~k~g--~~l~~~~~-------~~~~~~~~~~~~~~------~~~l  258 (813)
                      |..+.+.+|     ++++|.|.+.+.+  .+.|.|||+.  ..+.....       .........|+.+.      +++|
T Consensus         7 p~~~~v~~G-----~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L   81 (444)
T 1igt_B            7 SGGGLVQPG-----GSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYL   81 (444)
T ss_dssp             ECCCEECTT-----CCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEE
T ss_pred             CCCeEEcCC-----CCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEE
Confidence            444566566     7799999998764  6789999974  22210000       00011123455543      2468


Q ss_pred             EEcCCccccCCeeEEEEeecCcee--eEeeeeEEeeee----ecccccCCCCceeecCCCeEEEecCCCCCCcc-eEEEe
Q psy14896        259 IINDPRQVEDRGSYHCKASNKFGS--IISESVQLAFGF----IGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGV-NYYWA  331 (813)
Q Consensus       259 ~i~~~~~~~d~G~Y~C~a~n~~g~--~~s~~~~l~v~~----~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~-~v~W~  331 (813)
                      .|.+. +.+|+|.|+|.|.|..+.  ..+..+.|.|..    +|.+........+.+|+.++|.|.+.+..|.+ .++|+
T Consensus        82 ~I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~  160 (444)
T 1igt_B           82 QMSRL-KSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWN  160 (444)
T ss_dssp             EECSC-CGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEG
T ss_pred             EECCC-CHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEe
Confidence            88885 899999999999997654  223456676653    23222222233347889999999975555776 99999


Q ss_pred             eccccccccCCccEEEc----cCccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCC----------ccccc
Q psy14896        332 RDYFPNFVEEDKRVFVS----YDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHS----------NFQQL  397 (813)
Q Consensus       332 k~~~~~~~~~~~~~~~~----~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~----------~~~~~  397 (813)
                      |++..+...........    ..+.|.|.++..+| |.|+|.|.|..+.....   ..+.+....          .....
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~  236 (444)
T 1igt_B          161 SGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVD---KKIEPRGPTIKPCPPCKCPAPNLL  236 (444)
T ss_dssp             GGTBCTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEE---EECCCCCCSCCCCCCCSCCCSCCC
T ss_pred             cCCCCCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceE---EEeccCCCCcccCCccccCCcccC
Confidence            99886422211111111    12468999999899 99999999988753111   111110000          00000


Q ss_pred             ccCCC-CCCCCCcC-CCCCCcEEEEEEEeecC----CCeeeEeecCCcCCCCceeccccceEEEcccccccceEEeCCCc
Q psy14896        398 KFPNN-FPKTFPEA-PKAGDKVRLECVAFGYP----VPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTD  471 (813)
Q Consensus       398 ~~~~~-~~~~~~~~-v~~g~~~~l~C~~~g~p----~p~i~W~~~~~~l~~~~~~~~~~~~l~i~~~~~~g~y~~~~~~~  471 (813)
                      ..|.. ..+..... +.+|+.+.|.|.+.|.|    .+.|.|+|++..+.......                        
T Consensus       237 ~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~------------------------  292 (444)
T 1igt_B          237 GGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQT------------------------  292 (444)
T ss_dssp             CCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBC------------------------
T ss_pred             CCceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCccccc------------------------
Confidence            00000 00000011 46677777777776653    24666666665543210000                        


Q ss_pred             eEecccccccccCeEEEEEeeccCCCcEEEeeccccccceeccccCCCCCceEEeeCCeEEEeCCCCCCCCceEEEEEEc
Q psy14896        472 VVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASN  551 (813)
Q Consensus       472 ~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n  551 (813)
                                                 ..-                 .....+ ...++|.|.++ ..+|+|.|+|.|.|
T Consensus       293 ---------------------------~~~-----------------~~~~~~-~~~~~L~I~~v-~~~d~G~Y~C~a~n  326 (444)
T 1igt_B          293 ---------------------------HRE-----------------DYNSTL-RVVSALPIQHQ-DWMSGKEFKCKVNN  326 (444)
T ss_dssp             ---------------------------CEE-----------------ECSSSE-EEEEEEECCHH-HHHTTCEEEEEEEC
T ss_pred             ---------------------------cee-----------------CCCCcE-EEEEEEEEcHH-HhccCCcEEEEEEc
Confidence                                       000                 000111 12357999886 89999999999999


Q ss_pred             CceeEE-eecEEE--EEeecccccccCCCc-eeccCCCceEEeCCCCC-CCcc-EEEEccCCCCCcccCCCeEEEeeCcc
Q psy14896        552 KFGSII-SESVQL--AFGFIGEFNLKRAPE-IGNQNWGKAMFCDPPTN-YPGV-NYYWARDYFPNFVEEDKRVFVSYDGA  625 (813)
Q Consensus       552 ~~g~~~-s~~~~l--~v~~~p~~~~~~~~~-~~~~g~~~~l~C~~~~~-~p~~-~v~W~k~~~~~~~~~~~~~~~~~~~~  625 (813)
                      ..|... ...+.+  .+..+|.+.+...+. .+..| .++|.|.+ .| +|++ .|+|+|+|.++............+|+
T Consensus       327 ~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~-~~~L~C~~-~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~  404 (444)
T 1igt_B          327 KDLPAPIERTISKPKGSVRAPQVYVLPPPEEEMTKK-QVTLTCMV-TDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGS  404 (444)
T ss_dssp             TTCSSCEEEEEECCCCCCBCCEEEEECCCGGGTTSS-EEEEEEEE-EEEBSSCCEEEEEETTEECSSEEECCCEECTTSC
T ss_pred             CCCCCceEEEEeccCCCCCCCEEEEeCCChHHccCC-eEEEEEEE-EeeeCCCCEEEEEECCEEccccccccceeCCCCC
Confidence            987641 122222  344566555443333 23344 49999999 55 5665 99999999764211111222345564


Q ss_pred             ------EEEEeecccCCeeEEEEEEeeec
Q psy14896        626 ------LYFSALEQIDAGNYSCNVQSKVS  648 (813)
Q Consensus       626 ------L~i~~~~~~d~G~Y~C~a~n~~g  648 (813)
                            |.|.....+|+|.|+|.|.|...
T Consensus       405 ~~~~s~l~i~~~~~~d~g~YtC~a~n~~l  433 (444)
T 1igt_B          405 YFMYSKLRVEKKNWVERNSYSCSVVHEGL  433 (444)
T ss_dssp             EEEEEEEEEEHHHHHTCCCEEEEEECTTS
T ss_pred             EEEEEEEEEChHHhcCCCeEEEEEECCCc
Confidence                  45555566779999999999763

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=100.00  E-value=2e-31  Score=273.97  Aligned_cols=247  Identities=17%  Similarity=0.251  Sum_probs=192.0

Q ss_pred             ccccCeEEEEEeeccCCCcEEEeeccccccceeccccCCCCCceEEeeCCeEEEeCCCCCCCCceEEEEEEcCceeEEee
Q psy14896        480 SILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE  559 (813)
Q Consensus       480 ~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~  559 (813)
                      .+|+.++|.|.+.|    .|.|+|++..+             ......+++|.|.++ ..+|+|.|+|.|.|  |.  +.
T Consensus        25 ~~G~~v~l~C~~~~----~i~W~~~~~~~-------------~~~~~~~~~L~i~~~-~~~d~G~Y~C~~~n--g~--~~   82 (290)
T 2o26_X           25 EAGDTLSLTCIDPD----FVRWTFKTYFN-------------EMVENKKNEWIQEKA-EATRTGTYTCSNSN--GL--TS   82 (290)
T ss_dssp             ETTSCEEEEEECTT----EEEEEEECSSS-------------CEEEECSSEEEETTC-CGGGCEEEEEEESS--SC--EE
T ss_pred             cCCCcEEEEECCCC----cEEEecCCcce-------------eeecCCCceEEEecc-CHHhCeEEEEEeeC--Cc--cE
Confidence            78999999999988    89999999643             112234489999997 99999999999999  54  45


Q ss_pred             cEEEEEeecccccccCCCceeccCCCceEEeCCCCCCCc-cEEEE-ccCCCCCcccCCCeEEEeeCccEEEEeecccCCe
Q psy14896        560 SVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPG-VNYYW-ARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAG  637 (813)
Q Consensus       560 ~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~v~W-~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  637 (813)
                      .+.|.|..+|.+........+.+|+.++|.|.+ .+ |. +.++| +++|.+  +....++....++.|.|.++..+|+|
T Consensus        83 ~~~l~V~~~~~~~~~~~~~~~~~g~~v~l~C~~-~~-p~~~~v~W~~~~g~~--l~~~~~~~~~~~~~L~i~~v~~~d~G  158 (290)
T 2o26_X           83 SIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPL-TD-PQVSQYSLIECDGKS--LPTDLTFVPNPKAGITIKNVKRAYHR  158 (290)
T ss_dssp             EEEEEEECSSCCBCCCCCEEEETTSCEEECCCB-SC-CSCEEEEEEETTSCC--CCTTCEEEEETTTEEEEESCCGGGTT
T ss_pred             EEEEEEeCCCcccccccceEEecCCeEEEeCcC-CC-CCCceEEEEeCCCcC--CCCCCceeeCCCCCEEEecccHHHCC
Confidence            578888877766555666677889999999999 45 77 99999 578865  45567777777889999999999999


Q ss_pred             -eEEEEEEeeecCccccCceeeEEEc----cCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCe-EEEEeCCc
Q psy14896        638 -NYSCNVQSKVSDTGRNGPFFPLKVF----PHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPS-YNWTRRGS  711 (813)
Q Consensus       638 -~Y~C~a~n~~g~~~~~~~~~~l~v~----~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~-i~W~k~g~  711 (813)
                       .|+|.|.|..|...  +..+.|.|.    .+|.+..        ......+.+|++++|.|.+.|.|.|. |+|+|+|.
T Consensus       159 ~~Y~C~a~n~~~~~~--s~~~~l~V~~~~~~~P~i~~--------~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~  228 (290)
T 2o26_X          159 LCVRCAAQRDGTWLH--SDKFTLKVREAIKAIPVVSV--------PETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNP  228 (290)
T ss_dssp             CEEEEEEEETTEEEE--CCCEEEEEECCCCSCCEEEC--------SCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEESS
T ss_pred             CEEEEEEEECCceEE--eEEEEEEEEeCCCCCCcccc--------CCCcceEecCCcEEEEEEEecCCcceeEEEecCCC
Confidence             99999999854422  223667776    3333221        22235789999999999999999996 99999998


Q ss_pred             cc----CCCc--e-----eeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCC
Q psy14896        712 PL----PRNA--Y-----FENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEP  762 (813)
Q Consensus       712 ~l----~~~~--~-----~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P  762 (813)
                      .+    ....  .     .....+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..+|
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P  290 (290)
T 2o26_X          229 QPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEKG  290 (290)
T ss_dssp             SEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC----
T ss_pred             CCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEEeCC
Confidence            73    2221  1     12335689999999999999999999999999999999999876

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.98  E-value=1.1e-32  Score=287.14  Aligned_cols=264  Identities=15%  Similarity=0.218  Sum_probs=196.4

Q ss_pred             ccccCeEEEEEeeccC-CCcEEEeeccccccceeccccCCCCCceEEeeCCeEEEeCCCCCCCCceEEEEEEcCceeEEe
Q psy14896        480 SILNDITLSCYAGGYP-NPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIIS  558 (813)
Q Consensus       480 ~~g~~~~l~C~~~g~p-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s  558 (813)
                      .+|+.+.|.|.+.+.| .+.|.|+|+|..+.      +......++...+++|.|.++ ..+|+|.|+|.|.|..|....
T Consensus        18 ~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~------~~~~~~~~~~~~~~~L~i~~v-~~~D~G~Y~C~a~n~~g~~~~   90 (315)
T 1itb_B           18 SANEIDVRPCPLNPNEHKGTITWYKDDSKTP------VSTEQASRIHQHKEKLWFVPA-KVEDSGHYYCVVRNSSYCLRI   90 (315)
T ss_dssp             ETTSCCCCBCCCCSCCCSSCCCEECTTSCSC------SCCCTTSSSEECSSBEECTTC-CGGGCSCCEECCCSSSCCCCE
T ss_pred             cCCCcEEEEeeccCcCCCceEEEEeCCCcCc------cccccCCcEeccCCeEEECCC-ChhhCEEEEEEEeCCceEEEE
Confidence            7899999999999988 78999999985421      122335566667789999997 999999999999999876532


Q ss_pred             ecEEEEE-eecccccccC---CCceeccCCCceEEeCCC-----CCCCccEEEEccCCCCCcccCCCeEEEeeCccEEEE
Q psy14896        559 ESVQLAF-GFIGEFNLKR---APEIGNQNWGKAMFCDPP-----TNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFS  629 (813)
Q Consensus       559 ~~~~l~v-~~~p~~~~~~---~~~~~~~g~~~~l~C~~~-----~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~  629 (813)
                      . +.+.+ ..+|.+....   ....+..|+.++|.|.+.     .|.|.+.++|+|++.++... ..+ ....+++|.|.
T Consensus        91 ~-~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~-~~~-~~~~~~~L~i~  167 (315)
T 1itb_B           91 K-ISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLD-NIH-FSGVKDRLIVM  167 (315)
T ss_dssp             E-CCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCC-SSS-EEEETTEEEES
T ss_pred             E-EEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCc-cce-EeecCceEEEE
Confidence            2 33332 2334332221   224567899999999983     78999999999999874332 223 34457789999


Q ss_pred             eecccCCeeEEEEEE-eeecCccccCceeeEEEc-----cCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCe
Q psy14896        630 ALEQIDAGNYSCNVQ-SKVSDTGRNGPFFPLKVF-----PHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPS  703 (813)
Q Consensus       630 ~~~~~d~G~Y~C~a~-n~~g~~~~~~~~~~l~v~-----~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~  703 (813)
                      +++.+|+|.|+|.|. |..|........+.+.+.     .+|.+.   .+    ......+.+|+.++|.|.+.|.|.|.
T Consensus       168 ~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~---~~----~~~~~~~~~g~~v~l~C~~~g~P~p~  240 (315)
T 1itb_B          168 NVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIV---SP----ANETMEVDLGSQIQLICNVTGQLSDI  240 (315)
T ss_dssp             SCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEEC---SC----CSEEEECCSSSCEEEEEEEEECTTSE
T ss_pred             eceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEe---cC----CCCcEEEeCCCcEEEEEEEecCCCCe
Confidence            999999999999999 777765333333444443     222221   11    11124688999999999999999999


Q ss_pred             EEEEeCCcccCCCcee------e----------ecceEEEECCCCCCC-CEEEEEEEEcCCCceEEEEEEEEEc
Q psy14896        704 YNWTRRGSPLPRNAYF------E----------NFNRILTIPNVKVED-QGEYICRASNDRSALESSVTISIQA  760 (813)
Q Consensus       704 i~W~k~g~~l~~~~~~------~----------~~~~~L~i~~v~~~d-~G~Y~C~a~N~~G~~~~~~~l~V~~  760 (813)
                      |+|+|||..+..+...      .          ...+.|+|.+++.+| +|.|+|.|.|.+|..++++.|.|..
T Consensus       241 i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~~  314 (315)
T 1itb_B          241 AYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYPV  314 (315)
T ss_dssp             EEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEECCC
T ss_pred             eEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEecC
Confidence            9999999998765421      1          123489999999999 9999999999999999999998853

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.98  E-value=5.3e-32  Score=296.25  Aligned_cols=313  Identities=14%  Similarity=0.190  Sum_probs=205.6

Q ss_pred             ccccCeEEEEEeeccC--CCcEEEeecc--ccccceecc-------ccCCCCCceEEee------CCeEEEeCCCCCCCC
Q psy14896        480 SILNDITLSCYAGGYP--NPSYEWFKED--YVQDRLVAN-------LIDPLSDKRFTLS------GGNLIINDPRQVEDR  542 (813)
Q Consensus       480 ~~g~~~~l~C~~~g~p--~~~v~W~k~~--~~~~~~~~~-------~~~~~~~~~~~~~------~~~l~i~~~~~~~d~  542 (813)
                      .+|+.++|.|.+.+.+  .+.|.|||+.  ..+..+...       ........|+.+.      ..+|.|.++ +.+|+
T Consensus        13 ~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v-~~~D~   91 (444)
T 1igt_B           13 QPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSRL-KSEDT   91 (444)
T ss_dssp             CTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEECSC-CGGGC
T ss_pred             cCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEECCC-CHHHC
Confidence            7899999999999875  6789999974  222111100       0011122355442      248999997 99999


Q ss_pred             ceEEEEEEcCcee--EEeecEEEEEee----cccccccCCCceeccCCCceEEeCCCCCCCcc-EEEEccCCCCCcccCC
Q psy14896        543 GSYHCKASNKFGS--IISESVQLAFGF----IGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGV-NYYWARDYFPNFVEED  615 (813)
Q Consensus       543 G~Y~C~a~n~~g~--~~s~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~v~W~k~~~~~~~~~~  615 (813)
                      |.|+|.|.|..+.  .....+.|.|..    +|.+........+.+|+.++|.|.+....|.+ .|+|+|++.++.....
T Consensus        92 G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~  171 (444)
T 1igt_B           92 AMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTF  171 (444)
T ss_dssp             EEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEGGGTBCTTEEEC
T ss_pred             EEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEecCCCCCCeEec
Confidence            9999999997654  233446677753    23332222233347899999999994335776 9999999875321111


Q ss_pred             CeEE----EeeCccEEEEeecccCCeeEEEEEEeeecCccccCceeeEEEc------------------cCCCccccccC
Q psy14896        616 KRVF----VSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF------------------PHSNFQQLKFP  673 (813)
Q Consensus       616 ~~~~----~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~------------------~~p~~~~~~~p  673 (813)
                      ....    ....+.|.|.++..+| |.|+|.|.|..|.....   ..+.+.                  .+|.+.  ..|
T Consensus       172 ~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~--~~~  245 (444)
T 1igt_B          172 PAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVD---KKIEPRGPTIKPCPPCKCPAPNLLGGPSVF--IFP  245 (444)
T ss_dssp             CCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEE---EECCCCCCSCCCCCCCSCCCSCCCCCCEEE--EEC
T ss_pred             CccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceE---EEeccCCCCcccCCccccCCcccCCCceEE--ecC
Confidence            1111    1112458999999999 99999999998753211   111110                  011110  011


Q ss_pred             CCCCCCCCcC-CCCCCeEEEEEEecCCC----CCeEEEEeCCcccCCCcee----e-----ecceEEEECCCCCCCCEEE
Q psy14896        674 NNFPKTFPEA-PKAGDKVRLECVAFGYP----VPSYNWTRRGSPLPRNAYF----E-----NFNRILTIPNVKVEDQGEY  739 (813)
Q Consensus       674 ~~~~~~~~~~-~~~G~~v~l~C~~~g~P----~p~i~W~k~g~~l~~~~~~----~-----~~~~~L~i~~v~~~d~G~Y  739 (813)
                           +.... +.+|++++|.|.+.|.|    .+.|+|+|+|..+......    .     ...++|.|.+++.+|+|.|
T Consensus       246 -----p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y  320 (444)
T 1igt_B          246 -----PKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEF  320 (444)
T ss_dssp             -----CCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEE
T ss_pred             -----CchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcE
Confidence                 11112 58899999999999984    3699999999887543211    0     1245899999999999999


Q ss_pred             EEEEEcCCCce--EEEEEE--EEEcCCcccccCC-ceeecCCCeEEEEEEEcc-cCCc-eEEEEECCEecccc
Q psy14896        740 ICRASNDRSAL--ESSVTI--SIQAEPNFTIPLT-DKHMDNQADLTWTCEAFG-VPDV-TYSWFRNGELGHQM  805 (813)
Q Consensus       740 ~C~a~N~~G~~--~~~~~l--~V~~~P~~~~~~~-~~~~~~g~~~~l~C~~~g-~p~~-~v~W~k~g~~l~~~  805 (813)
                      +|.|.|..|..  +..+.+  .+..+|.+...+. ...+..| .++|.|.+.| .|++ .|+|+|||++|...
T Consensus       321 ~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~-~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~  392 (444)
T 1igt_B          321 KCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEEMTKK-QVTLTCMVTDFMPEDIYVEWTNNGKTELNY  392 (444)
T ss_dssp             EEEEECTTCSSCEEEEEECCCCCCBCCEEEEECCCGGGTTSS-EEEEEEEEEEEBSSCCEEEEEETTEECSSE
T ss_pred             EEEEEcCCCCCceEEEEeccCCCCCCCEEEEeCCChHHccCC-eEEEEEEEEeeeCCCCEEEEEECCEEcccc
Confidence            99999999977  344433  5567888764333 2334445 5999999999 4555 89999999998543

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.98  E-value=2.1e-32  Score=283.89  Aligned_cols=272  Identities=17%  Similarity=0.170  Sum_probs=196.0

Q ss_pred             ccccCeEEEEEeecc-CCCcEEEeeccccccceec-------cccCCCCCceEEe-----eCCeEEEeCCCCCCCCceEE
Q psy14896        480 SILNDITLSCYAGGY-PNPSYEWFKEDYVQDRLVA-------NLIDPLSDKRFTL-----SGGNLIINDPRQVEDRGSYH  546 (813)
Q Consensus       480 ~~g~~~~l~C~~~g~-p~~~v~W~k~~~~~~~~~~-------~~~~~~~~~~~~~-----~~~~l~i~~~~~~~d~G~Y~  546 (813)
                      .+|++++|.|.+.+. |.+.|+|+|++........       .........+...     .+++|.|.++ +.+|+|.|+
T Consensus        12 ~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v-~~~D~G~Y~   90 (308)
T 4fom_A           12 VWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNI-GFSDSGKYI   90 (308)
T ss_dssp             ETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSC-CGGGCEEEE
T ss_pred             EcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccC-CHHHCEEEE
Confidence            679999999998754 4567999998754322111       1112222334433     2357999997 999999999


Q ss_pred             EEEEcCceeEEeecEEEEEeeccccccc--CCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEE----E
Q psy14896        547 CKASNKFGSIISESVQLAFGFIGEFNLK--RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVF----V  620 (813)
Q Consensus       547 C~a~n~~g~~~s~~~~l~v~~~p~~~~~--~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~----~  620 (813)
                      |.|.|..+...+..+.+.+...|.+...  ........++.+.|.|.+..|.|.+.|+|+|++.++...  ....    .
T Consensus        91 C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~--~~~~~~~~~  168 (308)
T 4fom_A           91 CKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMEST--TTSFPNETA  168 (308)
T ss_dssp             EEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEE--EEECTTSCE
T ss_pred             EEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccc--cceeeeecc
Confidence            9999874444455566776665554332  333344567788999987678999999999998764211  1100    1


Q ss_pred             eeCccEEEEeecccCCeeEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCC
Q psy14896        621 SYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYP  700 (813)
Q Consensus       621 ~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P  700 (813)
                      ...+.|.|..+..+|+|.|+|.|.|..|.... ...+.|.|..+|.+...       ......+..|+.++|.|.+.|.|
T Consensus       169 ~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~-~~~~~l~V~~~P~~~~~-------~~~~~~~~~g~~v~l~C~~~g~P  240 (308)
T 4fom_A          169 TIISQYKLFPTRFARGRRITCVVKHPALEKDI-RYSFILDIQYAPEVSVT-------GYDGNWFVGRKGVNLKCNADANP  240 (308)
T ss_dssp             EEEEEEEECCCGGGTTCEEEEEEECTTCSSCE-EEEEECCCCEEEEECCB-------CCCSCEETTCCSCEEECCEEEES
T ss_pred             cccccceEEeeeecCCccEEEEEEccCCCCce-EEeEEEEEecCCeeEEc-------ccceeeeeccccEEEEEEEecCC
Confidence            11235999999999999999999998876433 23456667777654332       11224567899999999999999


Q ss_pred             CC-eEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCCc
Q psy14896        701 VP-SYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPN  763 (813)
Q Consensus       701 ~p-~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~  763 (813)
                      +| .|+|+|++..+...... ..+..|.|.+++.+|+|.|+|+|.|.+|..++++.|.|.+||.
T Consensus       241 ~p~~v~W~k~~~~~~~~~~~-~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~~P~  303 (308)
T 4fom_A          241 PPFKSVWSRLDGQWPDGLLA-SDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISDPPH  303 (308)
T ss_dssp             CEEEEECCBSSSCCCSSCBC-STTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEECCC-
T ss_pred             CCcEEEEEECCeECCCcEEE-cCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEEcCCC
Confidence            98 69999999988765433 3456788999999999999999999999999999999999986

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.97  E-value=2.5e-32  Score=297.73  Aligned_cols=356  Identities=15%  Similarity=0.232  Sum_probs=222.0

Q ss_pred             CCCceeecCCCeEEEecCCCC-CCcceEEEeecc--cccc-c--------------cCCccEEEccC-----ccEEEeee
Q psy14896        302 RAPEIGNQNWGKAMFCDPPTN-YPGVNYYWARDY--FPNF-V--------------EEDKRVFVSYD-----GALYFSAL  358 (813)
Q Consensus       302 ~~~~~~~~~~~~~l~C~~~~~-~p~~~v~W~k~~--~~~~-~--------------~~~~~~~~~~~-----~~L~i~~v  358 (813)
                      +.+..+.+|+.++|.|.+... .+.+.+.|+|++  ..+. +              ....|+.+..+     .+|.|.++
T Consensus         6 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   85 (434)
T 1igy_B            6 SGAELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLSSL   85 (434)
T ss_dssp             CCCCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEECSB
T ss_pred             CCCeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEECCC
Confidence            345678899999999997432 146889999974  2210 0              11356666543     37999999


Q ss_pred             eecCCeeeEEEEeeeccccCCCCCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEEEEeec-CCC-eeeEeec
Q psy14896        359 EQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGY-PVP-SYNWTRR  436 (813)
Q Consensus       359 ~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~~g~-p~p-~i~W~~~  436 (813)
                      +.+|+|.|+|.|.|..+.   .+..+.|.|...+.    ..|..........+.+|+.+.|.|.+.|. |.| .|.|+++
T Consensus        86 ~~~D~G~Y~C~~~~~~~~---~~~~~~l~V~~~~~----~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~  158 (434)
T 1igy_B           86 TSDDSAVYYCVREGEVPY---WGQGTTVTVSSAKT----TPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSG  158 (434)
T ss_dssp             CGGGCSEECCCCSSSSCC---CCCCEECEECCSCC----BCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTT
T ss_pred             ChHHCEEEEEEEEccccc---cCCceEEEEccCCC----CCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeC
Confidence            999999999999985322   23346777764211    11111100111245789999999999886 776 8999888


Q ss_pred             CCcCCCCceeccccceEEEcccccccceEEeCCCceEecccccccccCeEEEEEeeccCCCcEEEeeccccccceecccc
Q psy14896        437 GSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLI  516 (813)
Q Consensus       437 ~~~l~~~~~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~  516 (813)
                      +..+.... +                                                +.                   .
T Consensus       159 ~~~~~~~~-~------------------------------------------------~~-------------------~  170 (434)
T 1igy_B          159 SLSSGVHT-F------------------------------------------------PA-------------------V  170 (434)
T ss_dssp             TBCSSEEE-C------------------------------------------------CC-------------------E
T ss_pred             CcCCCeEe-c------------------------------------------------Cc-------------------e
Confidence            76531100 0                                                00                   0


Q ss_pred             CCCCCceEEeeCCeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEEe----------ec--ccccccCCC-ce-ecc
Q psy14896        517 DPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFG----------FI--GEFNLKRAP-EI-GNQ  582 (813)
Q Consensus       517 ~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~----------~~--p~~~~~~~~-~~-~~~  582 (813)
                        .....+. ..+.|.|..+ ..+| |.|+|.|.|..|.... ...+.+.          .+  |.+.+.... .. +.+
T Consensus       171 --~~~~~~~-~~s~L~i~~~-~~~d-g~Y~C~a~n~~~~~~~-~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~~v~~  244 (434)
T 1igy_B          171 --LQSDLYT-LSSSVTVPSS-PRPS-ETVTCNVAHPASSTKV-DKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLI  244 (434)
T ss_dssp             --ECSSCEE-EEEEEEEETT-TTTS-SCCEEEEECTTTTCCE-EEECCCCCCCCCCCCCCCSSSCCEEEECCCHHHHHST
T ss_pred             --ecCCcEE-EEEEEEEcch-hcCC-CcEEEEEEeCCCCccc-eeeccCCCCCCccccCCCCcCcEEEEeCCChHHhccc
Confidence              0001121 2256888886 7788 9999999999876311 1222111          00  222222211 22 788


Q ss_pred             CCCceEEeCCCCCCC----ccEEEEccCCCCCcccCCCeEEE------eeCccEEEEeecccCCeeEEEEEEeeecCccc
Q psy14896        583 NWGKAMFCDPPTNYP----GVNYYWARDYFPNFVEEDKRVFV------SYDGALYFSALEQIDAGNYSCNVQSKVSDTGR  652 (813)
Q Consensus       583 g~~~~l~C~~~~~~p----~~~v~W~k~~~~~~~~~~~~~~~------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  652 (813)
                      |+.++|.|.+. |.+    .+.|+|+|++..+..........      ...++|.|.++..+|+|.|+|.|.|..|....
T Consensus       245 G~~~~L~C~~~-g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~  323 (434)
T 1igy_B          245 TVTPKVTCVVV-DISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPAPI  323 (434)
T ss_dssp             TSCCEEEEEEC-CCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCSSCC
T ss_pred             CCCcEEEEEEe-ccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCCCce
Confidence            99999999994 663    46899999997642211111111      12346999999999999999999999886432


Q ss_pred             cCceeeE--EEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCC-CC-CeEEEEeCCcccCCCcee----ee---
Q psy14896        653 NGPFFPL--KVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGY-PV-PSYNWTRRGSPLPRNAYF----EN---  721 (813)
Q Consensus       653 ~~~~~~l--~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~-P~-p~i~W~k~g~~l~~~~~~----~~---  721 (813)
                      .. .+.+  .+..+|.+...  +.      ......|+.++|.|.+.|. |+ +.|+|+|||.+|......    ..   
T Consensus       324 ~~-~v~~~~~~~~~P~v~~~--~~------~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~  394 (434)
T 1igy_B          324 EK-TISKTKGKPRAPQVYTI--PP------PKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGS  394 (434)
T ss_dssp             CC-CCCCCCSCCBCCCCEEE--CC------CSSSSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCSCCEECCCCCCSSSC
T ss_pred             eE-EEeccCCCCcCCEEEEE--CC------CHHHhcCCcEEEEEEEEeeECCCeEEEEEECCEecCCceeccceeCCCCc
Confidence            21 2222  34445544322  11      1223457789999999985 43 389999999988543211    11   


Q ss_pred             --cceEEEECCCCCCCCEEEEEEEEcCCC
Q psy14896        722 --FNRILTIPNVKVEDQGEYICRASNDRS  748 (813)
Q Consensus       722 --~~~~L~i~~v~~~d~G~Y~C~a~N~~G  748 (813)
                        ..+.|.|.....+|+|.|+|.|.|...
T Consensus       395 ~~~~s~l~i~~~~~~~~g~YtC~a~n~~l  423 (434)
T 1igy_B          395 YFVYSKLNVQKSNWEAGNTFTCSVLHEGL  423 (434)
T ss_dssp             EEEEEEEEEEHHHHHTTCCEEEEEEETTS
T ss_pred             EEEEEEEEECchhccCCCEEEEEEEcCCC
Confidence              124578888888899999999999854

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.97  E-value=2.1e-31  Score=278.78  Aligned_cols=260  Identities=16%  Similarity=0.182  Sum_probs=195.6

Q ss_pred             ccccCeEEEEEeecc---------CCCcEEEeeccccccceeccccCCCCCceEEeeCCeEEEeCCCCCCCCc-eEEEEE
Q psy14896        480 SILNDITLSCYAGGY---------PNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG-SYHCKA  549 (813)
Q Consensus       480 ~~g~~~~l~C~~~g~---------p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G-~Y~C~a  549 (813)
                      .+|+.+.|.|.+.+.         |.+.|.|+|++..+..          ..+. ..+++|.|.++ ..+|+| .|+|.|
T Consensus        42 ~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~----------~~~~-~~~~~L~i~~v-~~~D~Gs~Y~C~a  109 (329)
T 3oq3_B           42 ALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRP----------LNRR-VKNGDLWIANY-TSNDSHRRYLCTV  109 (329)
T ss_dssp             CTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEE----------CSTT-EETTEEEESSC-CGGGGGCCEEEEE
T ss_pred             ECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccc----------cCce-eecceEEEcCC-ChHhCCCcEEEEE
Confidence            789999999999884         6689999999965321          1111 56889999997 999999 999999


Q ss_pred             EcCceeEEeecEEEEEeecccccccCCCceeccCCCceEEeCCCCCCC-ccEEEEccCCCCCcccCCCeEEEeeCccEEE
Q psy14896        550 SNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYP-GVNYYWARDYFPNFVEEDKRVFVSYDGALYF  628 (813)
Q Consensus       550 ~n~~g~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i  628 (813)
                      .|..|......+.+.+..+|.+........+.+|+.++|.|.+ .+.| .+.|+|+|++.++. ....++... +++|.|
T Consensus       110 ~n~~g~~~~~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~-~g~p~~~~i~W~k~~~~l~-~~~~~~~~~-~~~L~I  186 (329)
T 3oq3_B          110 TTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGI-LYAKHYNNITWYKNNQELI-IDGTKYSQS-GQNLII  186 (329)
T ss_dssp             ECTTSCEEEEEEEEEECCCCSCEEEEEETTSSTTTCEEEECCC-CSCCCCCEEEEEETTEECC-CSSSSEEEE-TTEEEE
T ss_pred             EeCCCceeeEEEEEEEcCCCcEeccccceEEeCCCcEEEEecc-CCCCCCceEEEEECCccCC-CCCceEecC-CCEEEE
Confidence            9998875444444445555544333333446779999999999 7889 89999999998753 233455444 788999


Q ss_pred             EeecccCCeeEEEEEEee--ecCcccc-CceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCC---CC
Q psy14896        629 SALEQIDAGNYSCNVQSK--VSDTGRN-GPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYP---VP  702 (813)
Q Consensus       629 ~~~~~~d~G~Y~C~a~n~--~g~~~~~-~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P---~p  702 (813)
                      .+++.+|+|.|+|.|.|.  .|..... ...+.|.|..+|......+     .+....+.+|++++|.|.+.|.|   +|
T Consensus       187 ~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~-----~~~~~~v~~G~~~~l~C~~~g~p~~~~~  261 (329)
T 3oq3_B          187 HNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLI-----LDPKINVTIGEPANITCTAVSTSLLVDD  261 (329)
T ss_dssp             CSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEE-----CCSEEEECTTSCEEEEEEEEETTCCTTC
T ss_pred             eecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCcee-----cCCeeEEecCCCEEEEEEEEECCCCCCC
Confidence            999999999999999997  6543321 2236688877663311110     11225788999999999999998   77


Q ss_pred             -eEEEEeCCccc-CCCcee-ee-------cceEEEECCCCCCCCE-EEEEEEEcCCCceEEEEEEEEE
Q psy14896        703 -SYNWTRRGSPL-PRNAYF-EN-------FNRILTIPNVKVEDQG-EYICRASNDRSALESSVTISIQ  759 (813)
Q Consensus       703 -~i~W~k~g~~l-~~~~~~-~~-------~~~~L~i~~v~~~d~G-~Y~C~a~N~~G~~~~~~~l~V~  759 (813)
                       .|+|+|+|..+ ..+... ..       ..+.|.|.+++.+|+| .|+|.|.|..|..+.++.|.|.
T Consensus       262 i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~v~  329 (329)
T 3oq3_B          262 VLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVLE  329 (329)
T ss_dssp             CEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEEEEEEC
T ss_pred             cEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEEEEEeC
Confidence             89999999985 333221 11       3578999999999999 9999999999999999998873

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.97  E-value=2e-30  Score=286.05  Aligned_cols=359  Identities=18%  Similarity=0.240  Sum_probs=221.8

Q ss_pred             CCCceeecCCCeEEEecCCCCCC--cceEEEeecc--cccc-c--------------cCCccEEEccC-----ccEEEee
Q psy14896        302 RAPEIGNQNWGKAMFCDPPTNYP--GVNYYWARDY--FPNF-V--------------EEDKRVFVSYD-----GALYFSA  357 (813)
Q Consensus       302 ~~~~~~~~~~~~~l~C~~~~~~p--~~~v~W~k~~--~~~~-~--------------~~~~~~~~~~~-----~~L~i~~  357 (813)
                      +.+..+.+|+.++|.|.+. +.+  .+.+.|+|+.  +... +              ....|+.+..+     .+|.|.+
T Consensus         8 p~~~~v~~G~~v~L~C~~~-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   86 (475)
T 1iga_A            8 SGAEVKKPGASVKVSCKAS-GYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSS   86 (475)
T ss_pred             CCcEEEeCCCCEEEEEEec-CCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEEECC
Confidence            4566788999999999964 333  6789999863  2211 1              11345555432     3799999


Q ss_pred             eeecCCeeeEEEEeeeccccC---CCCCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEEEEeec-CC-C-ee
Q psy14896        358 LEQIDAGNYSCNVQSKVSDTG---RNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGY-PV-P-SY  431 (813)
Q Consensus       358 v~~~D~G~Y~C~a~n~~g~~~---~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~~g~-p~-p-~i  431 (813)
                      ++.+|+|.|.|.+.|..|...   ..+..+.|.|...+.    ..|.... ..+..+.+|+.+.|.|.+.|. |. | .|
T Consensus        87 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~----~~P~i~~-~~~~~~~~g~~v~L~C~~~g~~P~~p~~v  161 (475)
T 1iga_A           87 LRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASP----TSPKVFP-LSLCSTQPDGNVVIACLVQGFFPQEPLSV  161 (475)
T ss_pred             CChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCC----cCCeEEe-cCccccCCCCeEEEEEEEeeecCCCceEE
Confidence            999999999999998765210   123346777764211    0111111 111234689999999999886 65 5 89


Q ss_pred             eEeecCCcCCCCceeccccceEEEcccccccceEEeCCCceEecccccccccCeEEEEEeeccCCCcEEEeeccccccce
Q psy14896        432 NWTRRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRL  511 (813)
Q Consensus       432 ~W~~~~~~l~~~~~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~  511 (813)
                      .|++++..+.... .                                                +  .             
T Consensus       162 ~W~~~~~~~~~~~-~------------------------------------------------~--~-------------  177 (475)
T 1iga_A          162 TWSESGQGVTARN-F------------------------------------------------P--P-------------  177 (475)
T ss_pred             EEcCCCcccceEe-C------------------------------------------------C--c-------------
Confidence            9988764321000 0                                                0  0             


Q ss_pred             eccccCCCCCceEEeeCCeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEEe------------------ecccc-c
Q psy14896        512 VANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFG------------------FIGEF-N  572 (813)
Q Consensus       512 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~------------------~~p~~-~  572 (813)
                          ........+. ..+.|.|..+ ..+|+|.|+|.|.|..+...+..+.+.|.                  .+|.+ .
T Consensus       178 ----~~~~~~g~~~-~~s~L~i~~~-~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~~~~~~~~p~v~~  251 (475)
T 1iga_A          178 ----SQDASGDLYT-TSSQLTLPAT-QCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSL  251 (475)
T ss_pred             ----eecCCCCcEE-EEEEEEechh-HcCCCceEEEEEEECCCCceeeeEecccccCcccccccccccCCCCCCCcEEEE
Confidence                0000111111 1245778775 77999999999999987533333443331                  12222 1


Q ss_pred             ccCCCceeccCCCceEEeCCCCCCCc---cEEEEccCCCCCcccCCCeEEE------eeCccEEEEeecccCCeeEEEEE
Q psy14896        573 LKRAPEIGNQNWGKAMFCDPPTNYPG---VNYYWARDYFPNFVEEDKRVFV------SYDGALYFSALEQIDAGNYSCNV  643 (813)
Q Consensus       573 ~~~~~~~~~~g~~~~l~C~~~~~~p~---~~v~W~k~~~~~~~~~~~~~~~------~~~~~L~i~~~~~~d~G~Y~C~a  643 (813)
                      ..+....+.+|+.++|.|.+ .|.++   +.|+| ++ .++..........      ...++|.|.++..+|+|.|+|.|
T Consensus       252 ~~p~~~~~~~G~~v~L~C~~-~g~~p~~~~~i~W-~~-~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a  328 (475)
T 1iga_A          252 HRPALEDLLLGSEANLTCTL-TGLRDASGVTFTW-TP-SSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTA  328 (475)
T ss_pred             cCCChHHhccCCceEEEEEE-EcccCCCceEEEE-CC-CCcCCccccCceECCCCCEEEEEEEEEchHHhccCCcEEEEE
Confidence            11222335789999999999 46543   69999 43 3322111111111      13446999999999999999999


Q ss_pred             EeeecCccccCceeeEE---EccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCC--CeEEEEeCCcccCCCce
Q psy14896        644 QSKVSDTGRNGPFFPLK---VFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPV--PSYNWTRRGSPLPRNAY  718 (813)
Q Consensus       644 ~n~~g~~~~~~~~~~l~---v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~--p~i~W~k~g~~l~~~~~  718 (813)
                      .|..|.....   ..|.   +..+|.+...  +     .....+.+|+.++|.|.+.|.++  +.|+|+|||.+|..+..
T Consensus       329 ~n~~~~~~~~---~~v~~~~~~~~P~v~~~--~-----~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~  398 (475)
T 1iga_A          329 AYPESKTPLT---ATLSKSGNTFRPEVHLL--P-----PPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKY  398 (475)
T ss_pred             EcCCCCCceE---EEeecCCCCCCCeEEEE--C-----CChHHhccCCceEEEEEEeeeECCCCEEEEEECCEECCCCce
Confidence            9998864221   2332   2344433221  1     11123678999999999999743  49999999998865531


Q ss_pred             ------ee---e-----cceEEEECCCCCCCCEEEEEEEEcCCCc
Q psy14896        719 ------FE---N-----FNRILTIPNVKVEDQGEYICRASNDRSA  749 (813)
Q Consensus       719 ------~~---~-----~~~~L~i~~v~~~d~G~Y~C~a~N~~G~  749 (813)
                            ..   .     ..+.|.|.....+|+|.|+|.|.|....
T Consensus       399 ~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~~~g~YtC~a~n~~l~  443 (475)
T 1iga_A          399 LTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP  443 (475)
T ss_pred             eecccccccCCCCCcEEEEEEEEEChHHhcCCCEEEEEEEcCCCC
Confidence                  11   1     1246888888889999999999998643

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.97  E-value=9.7e-32  Score=295.25  Aligned_cols=365  Identities=15%  Similarity=0.181  Sum_probs=203.8

Q ss_pred             CCceeecCCCccccccEEEEeeeccCC--CCeEEEeecc--cccccccc-------cccccCCCccEEee------CCeE
Q psy14896        196 PTDVVFDLSKRSILNDITLSCYAGGYP--NPSYEWFKED--YVQDRLVA-------NLIDPLSDKRFTLS------GGNL  258 (813)
Q Consensus       196 p~~~~v~~g~~~~g~~v~l~C~~~g~P--~p~v~W~k~g--~~l~~~~~-------~~~~~~~~~~~~~~------~~~l  258 (813)
                      |..+.+.+|     ++++|.|.+.+.|  .+.|.|||+.  ..+.....       .........|+.+.      ..+|
T Consensus         7 ~~~~~v~~G-----~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L   81 (457)
T 1hzh_H            7 SGAEVKKPG-----ASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYM   81 (457)
T ss_dssp             CCCEEECTT-----CCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEE
T ss_pred             CCceEEcCC-----CCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEE
Confidence            444666566     7799999998876  7899999963  22111000       00111223455543      1368


Q ss_pred             EEcCCccccCCeeEEEEeecCce---------e--eEeeeeEEeeee----ecccccCCCCceeecCCCeEEEecCCCCC
Q psy14896        259 IINDPRQVEDRGSYHCKASNKFG---------S--IISESVQLAFGF----IGEFNLKRAPEIGNQNWGKAMFCDPPTNY  323 (813)
Q Consensus       259 ~i~~~~~~~d~G~Y~C~a~n~~g---------~--~~s~~~~l~v~~----~~~~~~~~~~~~~~~~~~~~l~C~~~~~~  323 (813)
                      .|.+. +.+|+|.|+|.|.|..|         .  ..+..+.|.|..    +|.+........+.+|+.++|.|.+.+..
T Consensus        82 ~I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~  160 (457)
T 1hzh_H           82 ELRSL-RSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYF  160 (457)
T ss_dssp             EECSC-CGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCCCTTCCEEEEEEEESBB
T ss_pred             EECCC-CcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccccCCCcEEEEEEEeEEe
Confidence            88885 89999999999999865         1  123445666654    23333333334467889999999976555


Q ss_pred             Cc-ceEEEeeccccccccCCccEEEccCc------cEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCccc-
Q psy14896        324 PG-VNYYWARDYFPNFVEEDKRVFVSYDG------ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQ-  395 (813)
Q Consensus       324 p~-~~v~W~k~~~~~~~~~~~~~~~~~~~------~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~-  395 (813)
                      |. +.|+|+|++.++......+ ....++      .|.|.++..+| |.|+|.|.|..+.....   ..+.+...+... 
T Consensus       161 P~~~~v~W~k~~~~~~~~~~~~-~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~---~~v~~~~~~~~~~  235 (457)
T 1hzh_H          161 PEPVTVSWNSGALTSGVHTFPA-VLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVD---KKAEPKSCDKTHT  235 (457)
T ss_dssp             SCCCEEEETTTTBCTTEEEEEE-EECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEE---EECCCCCSCSSCS
T ss_pred             CCCeEEEEEeCCEeccceEcCc-eECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCccee---EEecccCCCcccc
Confidence            75 8999999997643221111 122333      69999999999 99999999976542111   222221111000 


Q ss_pred             --------ccccCCC-C-CCCCCcCCCCCCcEEEEEEEeecCCC----eeeEeecCCcCCCCceeccccceEEEcccccc
Q psy14896        396 --------QLKFPNN-F-PKTFPEAPKAGDKVRLECVAFGYPVP----SYNWTRRGSPLPRNAYFENFNRILTIPNVKMR  461 (813)
Q Consensus       396 --------~~~~~~~-~-~~~~~~~v~~g~~~~l~C~~~g~p~p----~i~W~~~~~~l~~~~~~~~~~~~l~i~~~~~~  461 (813)
                              ....|.. . ++.....+.+|+.+.|.|.+.|.|++    .|.|+|++.++.....                
T Consensus       236 ~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~----------------  299 (457)
T 1hzh_H          236 CPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKT----------------  299 (457)
T ss_dssp             CCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEE----------------
T ss_pred             cCCCCCccccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCcccccccc----------------
Confidence                    0000100 0 00000114556666666666665432    5666666554421100                


Q ss_pred             cceEEeCCCceEecccccccccCeEEEEEeeccCCCcEEEeeccccccceeccccCCCCCceEEeeCCeEEEeC---C--
Q psy14896        462 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIIND---P--  536 (813)
Q Consensus       462 g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~---~--  536 (813)
                                                                                 .......++.+.+..   +  
T Consensus       300 -----------------------------------------------------------~~~~~~~~g~~~~~~~l~i~~  320 (457)
T 1hzh_H          300 -----------------------------------------------------------KPREEQYNSTYRVVSVLTVLH  320 (457)
T ss_dssp             -----------------------------------------------------------EEEEECTTSCEEEEEEECCCH
T ss_pred             -----------------------------------------------------------ccceecCCCcEEEEEEEEECH
Confidence                                                                       000011122332221   1  


Q ss_pred             CCCCCCceEEEEEEcCceeEE-eecEEE--EEeecccccccCCCc-eeccCCCceEEeCCCCCC-Cc-cEEEEccCCCCC
Q psy14896        537 RQVEDRGSYHCKASNKFGSII-SESVQL--AFGFIGEFNLKRAPE-IGNQNWGKAMFCDPPTNY-PG-VNYYWARDYFPN  610 (813)
Q Consensus       537 ~~~~d~G~Y~C~a~n~~g~~~-s~~~~l--~v~~~p~~~~~~~~~-~~~~g~~~~l~C~~~~~~-p~-~~v~W~k~~~~~  610 (813)
                      ...+|+|.|+|.|.|..+... ...+.+  .+..+|.+.+..... .+..|+ ++|.|.+ .|. |+ +.|+|+|||.++
T Consensus       321 ~d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~-~~l~C~~-~g~~p~~~~v~W~k~g~~l  398 (457)
T 1hzh_H          321 QDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQ-VSLTCLV-KGFYPSDIAVEWESNGQPE  398 (457)
T ss_dssp             HHHHHTCCEEEEEECTTSSSCEEEEECCCCCCCBCCEEEEECCCGGGGGSSE-EEEEEEE-EEEBSSCCEEEEEETTEEC
T ss_pred             HHccCCCcEEEEEeCCCCCCcceEEEEcccCCCCCCeEEEECCCccccCCCc-EEEEEEE-EeEECCCCEEEEEECCEEC
Confidence            123349999999998755421 111221  234555554443332 344555 9999999 564 33 499999999764


Q ss_pred             cccCCCeEEEeeCcc------EEEEeecccCCeeEEEEEEeeec
Q psy14896        611 FVEEDKRVFVSYDGA------LYFSALEQIDAGNYSCNVQSKVS  648 (813)
Q Consensus       611 ~~~~~~~~~~~~~~~------L~i~~~~~~d~G~Y~C~a~n~~g  648 (813)
                      ......+.....+|+      |.|.....+|+|.|+|.|.|...
T Consensus       399 ~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l  442 (457)
T 1hzh_H          399 NNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL  442 (457)
T ss_dssp             CCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             cceeecCceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEECCC
Confidence            322222233345554      44555555789999999999763

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.97  E-value=8.8e-32  Score=282.85  Aligned_cols=264  Identities=18%  Similarity=0.270  Sum_probs=135.1

Q ss_pred             ccccCeEEEEEeecc-CCCcEEEeeccccccceeccccCCCCCceEEeeCCeEEEeCCCCCCCCceEEEEEEcCceeEEe
Q psy14896        480 SILNDITLSCYAGGY-PNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIIS  558 (813)
Q Consensus       480 ~~g~~~~l~C~~~g~-p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s  558 (813)
                      .+|+.++|.|.+.+. |.+.|.|+|+|..+.          ...++...+++|.|.++ ..+|+|.|+|.|.|. |.. +
T Consensus        21 ~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~----------~~~~~~~~~~~L~i~~v-~~~D~G~Y~C~a~n~-~~~-~   87 (334)
T 1ry7_B           21 GSGDAVELSCPPPGGGPMGPTVWVKDGTGLV----------PSERVLVGPQRLQVLNA-SHEDSGAYSCRQRLT-QRV-L   87 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ecCCcEEEEeeCCCCCCCcceEEEECCeeCC----------CcccEEeccceEEEeec-ccccCEEEEEEEEeC-CeE-E
Confidence            789999999999987 678999999996542          23344556789999997 999999999999998 554 4


Q ss_pred             ecEEEEEeecc----------------------ccccc----CCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcc
Q psy14896        559 ESVQLAFGFIG----------------------EFNLK----RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFV  612 (813)
Q Consensus       559 ~~~~l~v~~~p----------------------~~~~~----~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~  612 (813)
                      ..+.|.|...+                      .+...    .....+.+|+.++|.|.+ .|.|.+.|.|+|++.++..
T Consensus        88 ~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~-~g~p~~~v~W~~~~~~~~~  166 (334)
T 1ry7_B           88 CHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPA-AGNPTPSISWLKNGREFRG  166 (334)
T ss_dssp             -------------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCC-CCSSCCEEECCBTTBCCCT
T ss_pred             EEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEc-cCCCCCeEEEEECCEECcc
Confidence            44666665432                      22111    112356789999999999 7889999999999976432


Q ss_pred             cCCC-eEEE-eeCccEEEEeecccCCeeEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeE
Q psy14896        613 EEDK-RVFV-SYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKV  690 (813)
Q Consensus       613 ~~~~-~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v  690 (813)
                      .... .... ...++|.|.+++.+|+|.|+|.|.|..|...   ..+.|.|...+.......   ...+....+.+|+++
T Consensus       167 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~---~~~~l~V~~~~~~~p~~~---~~~~~~~~~~~G~~v  240 (334)
T 1ry7_B          167 EHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIR---QTYTLDVLERSPHRPILQ---AGLPANQTAVLGSDV  240 (334)
T ss_dssp             TSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEE---EEEEEEEECCCCSSCBCC---TTCSCCEEEESSCCE
T ss_pred             cccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEE---EEEEEEEecCCCCCCceE---ecCCCceEEeCCCCE
Confidence            2111 1111 2345699999999999999999999987643   346777776432111100   001223567899999


Q ss_pred             EEEEEecCCCCCeEEEEe----CCcccCCCce--e-----------eecceEEEECCCCCCCCEEEEEEEEcCCCceEEE
Q psy14896        691 RLECVAFGYPVPSYNWTR----RGSPLPRNAY--F-----------ENFNRILTIPNVKVEDQGEYICRASNDRSALESS  753 (813)
Q Consensus       691 ~l~C~~~g~P~p~i~W~k----~g~~l~~~~~--~-----------~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~  753 (813)
                      +|.|.+.|.|.|.|+|+|    ||..+..+..  +           ....+.|.|.+++.+|+|.|+|.|.|..|..+.+
T Consensus       241 ~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~  320 (334)
T 1ry7_B          241 EFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHS  320 (334)
T ss_dssp             EECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCEEEE
T ss_pred             EEEEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCeEEEE
Confidence            999999999999999999    7777754332  1           1112479999999999999999999999999999


Q ss_pred             EEEEEEcCCc
Q psy14896        754 VTISIQAEPN  763 (813)
Q Consensus       754 ~~l~V~~~P~  763 (813)
                      +.|.|..+|.
T Consensus       321 ~~l~V~~~~~  330 (334)
T 1ry7_B          321 AWLVVLPAEE  330 (334)
T ss_dssp             EEEEEECSCC
T ss_pred             EEEEEEECCC
Confidence            9999997664

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.97  E-value=1.3e-32  Score=300.11  Aligned_cols=372  Identities=12%  Similarity=0.139  Sum_probs=217.6

Q ss_pred             CCceeecCCCccccccEEEEeeeccCC--CCeEEEeecc--cccccccc-------cccccCCCccEEee------CCeE
Q psy14896        196 PTDVVFDLSKRSILNDITLSCYAGGYP--NPSYEWFKED--YVQDRLVA-------NLIDPLSDKRFTLS------GGNL  258 (813)
Q Consensus       196 p~~~~v~~g~~~~g~~v~l~C~~~g~P--~p~v~W~k~g--~~l~~~~~-------~~~~~~~~~~~~~~------~~~l  258 (813)
                      |..+.+.+|     ++++|.|.+.+.+  .+.|.|||++  ..+.....       .........|+.+.      +.+|
T Consensus         6 ~~~~~v~~G-----~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L   80 (434)
T 1igy_B            6 SGAELARPG-----ASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANI   80 (434)
T ss_dssp             CCCCEECTB-----CCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCE
T ss_pred             CCCeEecCC-----CCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEE
Confidence            444566566     7799999998864  6799999984  22210000       00111123456543      2368


Q ss_pred             EEcCCccccCCeeEEEEeecCceeeEeeeeEEeeee----ecccccCCCCceeecCCCeEEEecCCCCCCcc-eEEEeec
Q psy14896        259 IINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGF----IGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGV-NYYWARD  333 (813)
Q Consensus       259 ~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~----~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~-~v~W~k~  333 (813)
                      .|.+. +.+|+|.|+|.|.|..+.. +..+.|.|..    +|.+........+.+|+.++|.|.+.+..|.+ .|+|+|+
T Consensus        81 ~I~~v-~~~D~G~Y~C~~~~~~~~~-~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~  158 (434)
T 1igy_B           81 HLSSL-TSDDSAVYYCVREGEVPYW-GQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSG  158 (434)
T ss_dssp             EECSB-CGGGCSEECCCCSSSSCCC-CCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTT
T ss_pred             EECCC-ChHHCEEEEEEEEcccccc-CCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeC
Confidence            88885 8999999999999965433 4456666653    23222222233456888999999975445776 9999999


Q ss_pred             cccccccCCccEEE----ccCccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCccc----ccccCCCC-C
Q psy14896        334 YFPNFVEEDKRVFV----SYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQ----QLKFPNNF-P  404 (813)
Q Consensus       334 ~~~~~~~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~----~~~~~~~~-~  404 (813)
                      +..+..........    ...+.|.|.++..+| |.|+|.|.|..|.....   ..+.+......+    ....|... .
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~---~~~~~~~~~~~v~~~~~~~~p~v~~~  234 (434)
T 1igy_B          159 SLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVD---KKIVPRDCGCKPCICTVPEVSSVFIF  234 (434)
T ss_dssp             TBCSSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEE---EECCCCCCCCCCCCCCCSSSCCEEEE
T ss_pred             CcCCCeEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccce---eeccCCCCCCccccCCCCcCcEEEEe
Confidence            87632211111111    012468999999889 99999999988753211   222211000000    00001100 0


Q ss_pred             CCCCcC-CCCCCcEEEEEEEeecC----CCeeeEeecCCcCCCCceeccccceEEEcccccccceEEeCCCceEeccccc
Q psy14896        405 KTFPEA-PKAGDKVRLECVAFGYP----VPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKR  479 (813)
Q Consensus       405 ~~~~~~-v~~g~~~~l~C~~~g~p----~p~i~W~~~~~~l~~~~~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~  479 (813)
                      +..... +.+|+.+.|.|.+.|.|    .+.|.|+|++..+.......                                
T Consensus       235 ~p~~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~--------------------------------  282 (434)
T 1igy_B          235 PPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQP--------------------------------  282 (434)
T ss_dssp             CCCHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCC--------------------------------
T ss_pred             CCChHHhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCc--------------------------------
Confidence            000011 77888888888888763    34778887776653211000                                


Q ss_pred             ccccCeEEEEEeeccCCCcEEEeeccccccceeccccCCCCCceEEeeCCeEEEeCCCCCCCCceEEEEEEcCceeEE-e
Q psy14896        480 SILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSII-S  558 (813)
Q Consensus       480 ~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~-s  558 (813)
                                                          ........+ ...+.|.|.++ ..+|+|.|+|.|.|..|... .
T Consensus       283 ------------------------------------~~~~~~~~~-~~~~~L~i~~~-~~~d~G~Y~C~a~n~~~~~~~~  324 (434)
T 1igy_B          283 ------------------------------------REEQFNSTF-RVVSALPIMHQ-DWLNGKEFKCRVNSAAFPAPIE  324 (434)
T ss_dssp             ------------------------------------CCCCCSSSC-CCCCCEECCHH-HHHHTCCCBCCBCCSSCSSCCC
T ss_pred             ------------------------------------ceeCCCCcE-EEEEEEEECHH-HccCCCcEEEEEECCCCCCcee
Confidence                                                000001111 12357888886 88999999999999988641 1


Q ss_pred             ecEEE--EEeecccccccCCCceeccCCCceEEeCCCCC-CCc-cEEEEccCCCCCcccCCCeEEEeeCcc------EEE
Q psy14896        559 ESVQL--AFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTN-YPG-VNYYWARDYFPNFVEEDKRVFVSYDGA------LYF  628 (813)
Q Consensus       559 ~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~p~-~~v~W~k~~~~~~~~~~~~~~~~~~~~------L~i  628 (813)
                      ..+.+  .+..+|.+.+...+.....|..++|.|.+ .| +|+ +.|+|+|+|.++............+|+      |.|
T Consensus       325 ~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~-~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i  403 (434)
T 1igy_B          325 KTISKTKGKPRAPQVYTIPPPKEQMAKDKVSLTCMI-TDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSYFVYSKLNV  403 (434)
T ss_dssp             CCCCCCCSCCBCCCCEEECCCSSSSSSSEEEEEEEE-EEEBCSCEEEEEEETTSCCSCCEECCCCCCSSSCEEEEEEEEE
T ss_pred             EEEeccCCCCcCCEEEEECCCHHHhcCCcEEEEEEE-EeeECCCeEEEEEECCEecCCceeccceeCCCCcEEEEEEEEE
Confidence            22222  34456665554444334456679999999 55 453 589999999874211101111134553      566


Q ss_pred             EeecccCCeeEEEEEEeeecC
Q psy14896        629 SALEQIDAGNYSCNVQSKVSD  649 (813)
Q Consensus       629 ~~~~~~d~G~Y~C~a~n~~g~  649 (813)
                      .....+|+|.|+|.|.|....
T Consensus       404 ~~~~~~~~g~YtC~a~n~~l~  424 (434)
T 1igy_B          404 QKSNWEAGNTFTCSVLHEGLH  424 (434)
T ss_dssp             EHHHHHTTCCEEEEEEETTSG
T ss_pred             CchhccCCCEEEEEEEcCCCC
Confidence            666678899999999998643

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.97  E-value=6.9e-31  Score=277.80  Aligned_cols=277  Identities=16%  Similarity=0.163  Sum_probs=168.5

Q ss_pred             ccccCeEEEEEeeccCC-----------CcEEEeeccccccceeccccC-CCCCceEEeeCCeEEEeCCCCCCCCceEEE
Q psy14896        480 SILNDITLSCYAGGYPN-----------PSYEWFKEDYVQDRLVANLID-PLSDKRFTLSGGNLIINDPRQVEDRGSYHC  547 (813)
Q Consensus       480 ~~g~~~~l~C~~~g~p~-----------~~v~W~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C  547 (813)
                      .+|+.+.|.|.+.+.|.           +.|.|+|++.......  .+. .....++...+++|.|.++ ..+|+|.|+|
T Consensus        20 ~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~~-~~~D~G~Y~C   96 (349)
T 4dep_C           20 FEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEE--PINFRLPENRISKEKDVLWFRPT-LLNDTGNYTC   96 (349)
T ss_dssp             ETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEE--ECCCCCGGGCEEEETTEEEESSC-CGGGCEEEEE
T ss_pred             ecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccc--cccccccCceEeecCCEEEEccC-ChhhCEEEEE
Confidence            78999999999997664           9999999984321100  011 1123556677889999997 9999999999


Q ss_pred             EEEcCceeEEeecEEEEEeeccccccc----CCCceeccCCCceEEeCC----CCCCCccEEEEccCCCCCcccCCCeEE
Q psy14896        548 KASNKFGSIISESVQLAFGFIGEFNLK----RAPEIGNQNWGKAMFCDP----PTNYPGVNYYWARDYFPNFVEEDKRVF  619 (813)
Q Consensus       548 ~a~n~~g~~~s~~~~l~v~~~p~~~~~----~~~~~~~~g~~~~l~C~~----~~~~p~~~v~W~k~~~~~~~~~~~~~~  619 (813)
                      .|.|..|.... .+.|.|..++.....    .....+.+|+.++|.|.+    ..+.|.+.|+|+|++.++  ....++.
T Consensus        97 ~a~n~~~~~~~-~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l--~~~~~~~  173 (349)
T 4dep_C           97 MLRNTTYCSKV-AFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKI--QNFNNVI  173 (349)
T ss_dssp             EEECSSCEEEE-EEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEEC--CSCSSEE
T ss_pred             EEecCCceEEE-EEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEEC--CCcccee
Confidence            99999887643 477888765543222    123356789999999974    256899999999999763  3323332


Q ss_pred             EeeCccEEEEeecccCCeeEEEEEEeee-cCccccCceeeEEEccCCCccccccCCCCCCCCC--cCCCCCCeEEEEEEe
Q psy14896        620 VSYDGALYFSALEQIDAGNYSCNVQSKV-SDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFP--EAPKAGDKVRLECVA  696 (813)
Q Consensus       620 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~~-g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~--~~~~~G~~v~l~C~~  696 (813)
                       ..+.+|.|.+++.+|+|.|+|.|.|.. |........+.|.|..++....  .|....+...  ..+.+|++++|.|.+
T Consensus       174 -~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~--~p~i~~~~~~~~~~v~~G~~v~l~C~~  250 (349)
T 4dep_C          174 -PEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAV--PPVIHSPNDHVVYEKEPGEELLIPCTV  250 (349)
T ss_dssp             -EETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCC--SCEEC----------------CCCEEE
T ss_pred             -ecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCC--CCeEecCCCceeEEEecCCcEEEEEEE
Confidence             233569999999999999999999998 4321223456677766432100  0111111111  267899999999999


Q ss_pred             c----CCCCCeEEEEeCCcccCC-Cceee-------------ecceEEEECCCCCCCC-EEEEEEEEcCCCceEEEEEEE
Q psy14896        697 F----GYPVPSYNWTRRGSPLPR-NAYFE-------------NFNRILTIPNVKVEDQ-GEYICRASNDRSALESSVTIS  757 (813)
Q Consensus       697 ~----g~P~p~i~W~k~g~~l~~-~~~~~-------------~~~~~L~i~~v~~~d~-G~Y~C~a~N~~G~~~~~~~l~  757 (813)
                      .    |.|.|.|+|+|+|..+.. ..++.             ...++|+|.+++.+|+ |.|+|.|.|..|..+..+.|.
T Consensus       251 ~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~  330 (349)
T 4dep_C          251 YFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVK  330 (349)
T ss_dssp             EECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEEECSSCEEEEECC--
T ss_pred             EEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcEEEEEEEe
Confidence            9    678999999999998876 22211             1134599999999999 999999999999999999999


Q ss_pred             EEc-CCccc
Q psy14896        758 IQA-EPNFT  765 (813)
Q Consensus       758 V~~-~P~~~  765 (813)
                      |.. +|.+.
T Consensus       331 v~~~~p~~~  339 (349)
T 4dep_C          331 QKVPAPRYT  339 (349)
T ss_dssp             ---------
T ss_pred             eecCCCCCc
Confidence            986 44443

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.97  E-value=3.2e-31  Score=279.10  Aligned_cols=279  Identities=17%  Similarity=0.197  Sum_probs=206.9

Q ss_pred             eEEeCCCceEecccccccccCeEEEEEee-------ccCCCcEEEeeccccccceeccccCCCCCceEEeeCCeEEEeCC
Q psy14896        464 YFIKQPTDVVFDLSKRSILNDITLSCYAG-------GYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDP  536 (813)
Q Consensus       464 y~~~~~~~~~~~~~~~~~g~~~~l~C~~~-------g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~  536 (813)
                      ++...|.+..+     .+|+.+.|.|.+.       +.|.+.|.|+|+|..+.      +......++...+++|.|.++
T Consensus        20 ~~~~~~~~~~v-----~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~------~~~~~~~~~~~~~~~L~i~~v   88 (339)
T 3o4o_C           20 FRGRHYKREFR-----LEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSART------VPGEEETRMWAQDGALWLLPA   88 (339)
T ss_dssp             EEEECSCCEEE-----ETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSC------CSCCSSSCEEEETTEEEESSB
T ss_pred             hhCcCceEEEE-----ECCccEEEEeccccccccccCCCCceEEEEECCCCcc------cCccccccEEeeCCeEEECCC
Confidence            34444555555     7899999999998       99999999999996521      122224566678899999997


Q ss_pred             CCCCCCceEEEEEEcCceeEEeecEEEEEeeccccc--ccCCCceeccCCCceEEeCC----CCCCCccEEEEccCCCCC
Q psy14896        537 RQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFN--LKRAPEIGNQNWGKAMFCDP----PTNYPGVNYYWARDYFPN  610 (813)
Q Consensus       537 ~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~p~~~--~~~~~~~~~~g~~~~l~C~~----~~~~p~~~v~W~k~~~~~  610 (813)
                       ..+|+|.|+|.|.|..|.. +..+.|.|..++...  ....+..+.+|+.++|.|.+    ..+.|.+.|+|+|+|.++
T Consensus        89 -~~~D~G~Y~C~~~n~~g~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~  166 (339)
T 3o4o_C           89 -LQEDSGTYVCTTRNASYCD-KMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLL  166 (339)
T ss_dssp             -CTTCCEEEECCEEETTEEE-EEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBC
T ss_pred             -CcccCEEEEEEEECCcceE-EEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeC
Confidence             9999999999999998865 445778877665432  23334567889999999993    278899999999999864


Q ss_pred             cccCCCeEEEeeC-ccEEEEeecccCCeeEEEEEEeeecCcc-ccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCC
Q psy14896        611 FVEEDKRVFVSYD-GALYFSALEQIDAGNYSCNVQSKVSDTG-RNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGD  688 (813)
Q Consensus       611 ~~~~~~~~~~~~~-~~L~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~  688 (813)
                      .. ...++....+ ++|.|.+++.+|+|.|+|.|.|..|... .....+.|.|...+...   .|..........+.+|+
T Consensus       167 ~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~---~P~i~~~~~~~~v~~G~  242 (339)
T 3o4o_C          167 DK-DNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEET---IPVIISPLKTISASLGS  242 (339)
T ss_dssp             CT-TCSSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCC---CCEECCCSCCCCCCCCS
T ss_pred             CC-CCceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCC---CCEEecCCceeEeccCC
Confidence            33 2345555544 5799999999999999999999987533 23445677777544211   11111223346789999


Q ss_pred             eEEEEEEe---cCCC-CCeEEEEeCCcccCCCc---------eee-ecc------eEEEECCCCCCCC-EEEEEEEEcCC
Q psy14896        689 KVRLECVA---FGYP-VPSYNWTRRGSPLPRNA---------YFE-NFN------RILTIPNVKVEDQ-GEYICRASNDR  747 (813)
Q Consensus       689 ~v~l~C~~---~g~P-~p~i~W~k~g~~l~~~~---------~~~-~~~------~~L~i~~v~~~d~-G~Y~C~a~N~~  747 (813)
                      +++|.|.+   .|.| .|.+.|+++|..+....         ++. ..+      +.|.|.+++.+|+ |.|+|.|.|.+
T Consensus       243 ~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~  322 (339)
T 3o4o_C          243 RLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTL  322 (339)
T ss_dssp             CCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEETT
T ss_pred             CEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEEEEEecc
Confidence            99999999   9999 88999999998875321         110 111      2799999999998 99999999999


Q ss_pred             CceEEEEEEEEE
Q psy14896        748 SALESSVTISIQ  759 (813)
Q Consensus       748 G~~~~~~~l~V~  759 (813)
                      |+++..+.|.+.
T Consensus       323 G~~~~~~~~~~~  334 (339)
T 3o4o_C          323 SFQTLRTTVKEH  334 (339)
T ss_dssp             EEECCBCCCCC-
T ss_pred             CceEEEEEhhHh
Confidence            999888777654

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.97  E-value=7.2e-31  Score=288.31  Aligned_cols=320  Identities=17%  Similarity=0.226  Sum_probs=200.3

Q ss_pred             ccccCeEEEEEeeccC--CCcEEEeecc--ccccceec-------cccCCCCCceEEee------CCeEEEeCCCCCCCC
Q psy14896        480 SILNDITLSCYAGGYP--NPSYEWFKED--YVQDRLVA-------NLIDPLSDKRFTLS------GGNLIINDPRQVEDR  542 (813)
Q Consensus       480 ~~g~~~~l~C~~~g~p--~~~v~W~k~~--~~~~~~~~-------~~~~~~~~~~~~~~------~~~l~i~~~~~~~d~  542 (813)
                      .+|+.++|.|.+.+.|  .+.+.|+|+.  +....+..       .........|+.+.      ..+|.|.++ +.+|+
T Consensus        13 ~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v-~~~D~   91 (457)
T 1hzh_H           13 KPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSL-RSADT   91 (457)
T ss_dssp             CTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSC-CGGGC
T ss_pred             cCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECCC-CcccC
Confidence            7899999999999887  7889999953  22211110       00111223455442      137999997 99999


Q ss_pred             ceEEEEEEcCce---------e--EEeecEEEEEee----cccccccCCCceeccCCCceEEeCCCCCCCc-cEEEEccC
Q psy14896        543 GSYHCKASNKFG---------S--IISESVQLAFGF----IGEFNLKRAPEIGNQNWGKAMFCDPPTNYPG-VNYYWARD  606 (813)
Q Consensus       543 G~Y~C~a~n~~g---------~--~~s~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~v~W~k~  606 (813)
                      |.|+|.|.|..|         .  .....+.|.|..    +|.+........+.+|+.++|.|.+....|. +.|+|+|+
T Consensus        92 G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~  171 (457)
T 1hzh_H           92 AVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSG  171 (457)
T ss_dssp             EEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCCCTTCCEEEEEEEESBBSCCCEEEETTT
T ss_pred             EEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccccCCCcEEEEEEEeEEeCCCeEEEEEeC
Confidence            999999999865         1  122345666653    3333333333446789999999999533475 89999999


Q ss_pred             CCCCcccCCCeEEEeeCc------cEEEEeecccCCeeEEEEEEeeecCccccCceeeEEEccCCCcc---------ccc
Q psy14896        607 YFPNFVEEDKRVFVSYDG------ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQ---------QLK  671 (813)
Q Consensus       607 ~~~~~~~~~~~~~~~~~~------~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~---------~~~  671 (813)
                      +.++.... .......++      .|.|.++..+| |.|+|.|.|..+....   ...+.+...+...         ...
T Consensus       172 ~~~~~~~~-~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~  246 (457)
T 1hzh_H          172 ALTSGVHT-FPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKV---DKKAEPKSCDKTHTCPPCPAPELLG  246 (457)
T ss_dssp             TBCTTEEE-EEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEE---EEECCCCCSCSSCSCCSCCCCCCSS
T ss_pred             CEeccceE-cCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcce---eEEecccCCCcccccCCCCCccccC
Confidence            96532111 111112233      58999999999 9999999998765321   1122221111000         000


Q ss_pred             cCCC-C-CCCCCcCCCCCCeEEEEEEecCCCCC----eEEEEeCCcccCCCce---eeecceEEEECC---CCCCC---C
Q psy14896        672 FPNN-F-PKTFPEAPKAGDKVRLECVAFGYPVP----SYNWTRRGSPLPRNAY---FENFNRILTIPN---VKVED---Q  736 (813)
Q Consensus       672 ~p~~-~-~~~~~~~~~~G~~v~l~C~~~g~P~p----~i~W~k~g~~l~~~~~---~~~~~~~L~i~~---v~~~d---~  736 (813)
                      .|.. . ++.....+.+|++++|.|.+.|.|++    .|+|+|+|.++.....   ....++.|.|..   +..+|   +
T Consensus       247 ~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~  326 (457)
T 1hzh_H          247 GPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNG  326 (457)
T ss_dssp             SCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEEEECTTSCEEEEEEECCCHHHHHHT
T ss_pred             CceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCccccccccccceecCCCcEEEEEEEEECHHHccCC
Confidence            0100 0 01111126789999999999998653    9999999988764421   112233333332   33455   9


Q ss_pred             EEEEEEEEcCCCceEEEEEE----EEEcCCcccccC-CceeecCCCeEEEEEEEcccCCc--eEEEEECCEeccccc
Q psy14896        737 GEYICRASNDRSALESSVTI----SIQAEPNFTIPL-TDKHMDNQADLTWTCEAFGVPDV--TYSWFRNGELGHQMT  806 (813)
Q Consensus       737 G~Y~C~a~N~~G~~~~~~~l----~V~~~P~~~~~~-~~~~~~~g~~~~l~C~~~g~p~~--~v~W~k~g~~l~~~~  806 (813)
                      |.|+|.|.|..+.......|    .+..+|.+...+ ....+..|+ ++|.|.+.|.|++  .|.|+|||++|..+.
T Consensus       327 G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~-~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~  402 (457)
T 1hzh_H          327 KEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQ-VSLTCLVKGFYPSDIAVEWESNGQPENNYK  402 (457)
T ss_dssp             CCEEEEEECTTSSSCEEEEECCCCCCCBCCEEEEECCCGGGGGSSE-EEEEEEEEEEBSSCCEEEEEETTEECCCEE
T ss_pred             CcEEEEEeCCCCCCcceEEEEcccCCCCCCeEEEECCCccccCCCc-EEEEEEEEeEECCCCEEEEEECCEECccee
Confidence            99999999986665444344    346778776443 333455566 9999999997544  899999999997543

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.97  E-value=6.8e-30  Score=265.54  Aligned_cols=281  Identities=18%  Similarity=0.178  Sum_probs=189.8

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccCCCC-----eEEEeeccccccccccc---ccccCCCccEEe---------e
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP-----SYEWFKEDYVQDRLVAN---LIDPLSDKRFTL---------S  254 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p-----~v~W~k~g~~l~~~~~~---~~~~~~~~~~~~---------~  254 (813)
                      ++..|.++.+..|     ++++|.|.+.+.|.+     .|.|+|+|.........   ........++.+         .
T Consensus         3 vv~~P~~v~~~~G-----~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~   77 (313)
T 4fqp_A            3 VVQAPTQVPGFLG-----DSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELR   77 (313)
T ss_dssp             EEECCSEECCBTT-----SCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCC
T ss_pred             EEcCCCEEEEecC-----CCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCccc
Confidence            4455677776666     779999999886655     49999998653211100   001122223332         2


Q ss_pred             CCeEEEcCCccccCCeeEEEEeecCceeeEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCcceEEEeecc
Q psy14896        255 GGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDY  334 (813)
Q Consensus       255 ~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~  334 (813)
                      +++|.|.+. +.+|+|.|+|.|.+..+...+..+.|.+...|.+........+..++...+.|.+..+.|.+.+.|++++
T Consensus        78 ~~sL~I~~v-~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~  156 (313)
T 4fqp_A           78 NASLRMFGL-RVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDL  156 (313)
T ss_dssp             BCCEEECSC-CGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETT
T ss_pred             ceEEEECcC-ChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCC
Confidence            457888885 8999999999986543333367788888777776666666666777777899987788999999999999


Q ss_pred             ccccccCCccEEEccCc------cEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCcccccccCCCCCCCCC
Q psy14896        335 FPNFVEEDKRVFVSYDG------ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFP  408 (813)
Q Consensus       335 ~~~~~~~~~~~~~~~~~------~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~  408 (813)
                      ..+.  ...+.....++      .|.|..+..+|+|.|+|.|.|..+.... +..+.|.|..+|.+... .      ...
T Consensus       157 ~~~~--~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~-~~~~~l~V~~~P~v~~~-~------~~~  226 (313)
T 4fqp_A          157 GGMP--NTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQ-LLTVNLTVYYPPEVSIS-G------YDN  226 (313)
T ss_dssp             CCEE--EEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCE-EEEEECCBCEEEEEEEE-C------CCS
T ss_pred             cccc--ccceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccc-eeeeecccccCCccccc-c------ccc
Confidence            8742  22333333333      4888899999999999999997764332 22345556554432211 1      111


Q ss_pred             cCCCCCCcEEEEEEEeecCCC-eeeEeecCCcCCCCceeccccceEEEcccccccceEEeCCCceEecccccccccCeEE
Q psy14896        409 EAPKAGDKVRLECVAFGYPVP-SYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITL  487 (813)
Q Consensus       409 ~~v~~g~~~~l~C~~~g~p~p-~i~W~~~~~~l~~~~~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l  487 (813)
                      ..+.+|+.++|.|.+.|+|.| .|+|+|++.++...                                            
T Consensus       227 ~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~--------------------------------------------  262 (313)
T 4fqp_A          227 NWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPF--------------------------------------------  262 (313)
T ss_dssp             CEETTCCCEEEEEEEEEESCCCEEEEEETTBSCCTT--------------------------------------------
T ss_pred             eeecCCCeEEEEEEecCCCCCcEEEEEECCEECCCc--------------------------------------------
Confidence            245567777777777777776 47777776655321                                            


Q ss_pred             EEEeeccCCCcEEEeeccccccceeccccCCCCCceEEeeCCeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEEee
Q psy14896        488 SCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGF  567 (813)
Q Consensus       488 ~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~  567 (813)
                                                          ....+++|.|.++ ..+|+|.|+|.|.|..|.. +..+.|.|.+
T Consensus       263 ------------------------------------~~~~~~~L~i~~v-~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~~  304 (313)
T 4fqp_A          263 ------------------------------------AVAQGAQLLIRPV-DKPINTTLICNVTNALGAR-QAELTVQVKE  304 (313)
T ss_dssp             ------------------------------------EEEETTEEEECCC-SSCCEEEEEEEEECSSCEE-EEEEEEEEEC
T ss_pred             ------------------------------------eEEeCCEEEECcC-ChhhCEEEEEEEEeCCCcE-EEEEEEEEEe
Confidence                                                1234568999997 9999999999999999987 4457888876


Q ss_pred             ccc
Q psy14896        568 IGE  570 (813)
Q Consensus       568 ~p~  570 (813)
                      +|+
T Consensus       305 ~PP  307 (313)
T 4fqp_A          305 GPP  307 (313)
T ss_dssp             CC-
T ss_pred             CCC
Confidence            654

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.97  E-value=3.6e-30  Score=264.51  Aligned_cols=255  Identities=17%  Similarity=0.148  Sum_probs=188.4

Q ss_pred             ccccCeEEEEEeeccCCCcEEEeeccccccceeccccCCCCCceEEeeCCeEEEeCCCCCCCCceEEEEEEcCceeEEee
Q psy14896        480 SILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE  559 (813)
Q Consensus       480 ~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~  559 (813)
                      .+|+.++|.|.+.+    .|.|++++....           .......+++|.|.++ ..+|+|.|+|.|.|..|.. +.
T Consensus        17 ~~G~~v~L~C~~~~----~v~W~~~~~~~~-----------~~~~~~~~~~L~i~~~-~~~d~G~Y~C~~~~~~~~~-~~   79 (289)
T 3ejj_X           17 EPGETVTLRCVSNG----SVEWDGPISPYW-----------TLDPESPGSTLTTRNA-TFKNTGTYRCTELEDPMAG-ST   79 (289)
T ss_dssp             CTTCCEEEEEECSS----CCEEECSCSSSS-----------EECCCSSCCEEEESSC-CGGGCEEEEEECCC------CE
T ss_pred             CCCCCEEEEEEeCC----cEEEccCCCceE-----------EEeccCCccEEEEeee-ccccCEEEEEEEeccCCcc-ee
Confidence            68999999999988    599998874311           0111123468999997 9999999999999987774 55


Q ss_pred             cEEEEEeeccc-ccccCCCceeccCCCceEEeCCCCCCCccE-EEEcc-CCCCCcccCCCeEEEeeCccEEEEeecccCC
Q psy14896        560 SVQLAFGFIGE-FNLKRAPEIGNQNWGKAMFCDPPTNYPGVN-YYWAR-DYFPNFVEEDKRVFVSYDGALYFSALEQIDA  636 (813)
Q Consensus       560 ~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~-v~W~k-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  636 (813)
                      .+.|.|..++. +........+.+|+.++|.|.+ .+.|.+. ++|++ ++..  +....++....+++|.|.++..+|+
T Consensus        80 ~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~-~~~~~~~~v~W~~~~~~~--~~~~~~~~~~~~~~L~i~~v~~~d~  156 (289)
T 3ejj_X           80 TIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLI-TDPALKDSVSLMREGGRQ--VLRKTVYFFSPWRGFIIRKAKVLDS  156 (289)
T ss_dssp             EEEEEECCSSCSEEESCSEEEEETTSCEEECEEE-SCGGGGGSEEEEEGGGEE--CCTTCCEEEETTTEEEESSCCGGGC
T ss_pred             EEEEEEeCCCcceecccceEEEecCCceEeEEEc-cCCCcceEEEEEecCCee--cCCCccEEECCCCCEEEeecccccC
Confidence            67888887765 3444556677889999999999 4655554 99986 5543  4456677788888999999999999


Q ss_pred             eeEEEEEEeeecCccccCceeeEEEcc----CCCccccccCCCCCCCCCcCCCCCCeEEEEEEecC-CCCCeEEEEeCCc
Q psy14896        637 GNYSCNVQSKVSDTGRNGPFFPLKVFP----HSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFG-YPVPSYNWTRRGS  711 (813)
Q Consensus       637 G~Y~C~a~n~~g~~~~~~~~~~l~v~~----~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g-~P~p~i~W~k~g~  711 (813)
                      |.|+|.|.|..+  ......+.|.|..    +|.+..        ......+.+|++++|.|.+.| .|.|.|+|+|+|.
T Consensus       157 G~Y~C~a~~~~~--~~~~~~~~l~V~~~~~~~p~i~~--------~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~  226 (289)
T 3ejj_X          157 NTYVCKTMVNGR--ESTSTGIWLKVNRVHPEPPQIKL--------EPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDT  226 (289)
T ss_dssp             EEEEEEEEETTE--EEECCCEEEEEESSCCCCCEEEE--------ESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTE
T ss_pred             EEEEEEEEeCCC--ccccccEEEEEEECCCCCCeEEe--------cCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCE
Confidence            999999994322  2223447788873    333221        112245678999999999998 7999999999999


Q ss_pred             ccCCCcee------eecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCCcc
Q psy14896        712 PLPRNAYF------ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNF  764 (813)
Q Consensus       712 ~l~~~~~~------~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~~  764 (813)
                      .+......      ....+.|.|.+++.+|+|.|+|.|.|..|..++++.|.+..++.+
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~~~~~  285 (289)
T 3ejj_X          227 KLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESHHH  285 (289)
T ss_dssp             ECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC-----
T ss_pred             EeeccCCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEecccc
Confidence            88764322      223568999999999999999999999999999999999887654

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.97  E-value=1.9e-30  Score=270.63  Aligned_cols=170  Identities=15%  Similarity=0.200  Sum_probs=121.6

Q ss_pred             CCCceeeCCCceeecCCCccccccEEEEeeeccC-CCCeEEEeecccccccccccccccCCCccEEee--CCeEEEcCCc
Q psy14896        188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGY-PNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS--GGNLIINDPR  264 (813)
Q Consensus       188 ~~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~-P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~  264 (813)
                      .+|.|.. |.+..+.+|     ++++|.|.+.+. |.+.|.|||+|..+.          .+.++.+.  +.+|.|.+. 
T Consensus         6 ~~P~~~~-~~~~~v~~G-----~~v~l~C~~~~~~p~~~v~W~~~~~~~~----------~~~~~~~~~~~~~L~i~~~-   68 (317)
T 2y25_A            6 TGPHFVE-YLSWEVTGE-----CNVLLKCKVANIKKETHIVWYKDEREIS----------VDEKHDFKDGICTLLITEF-   68 (317)
T ss_dssp             SCCEEEE-EEEEEEETT-----TEEEEEEEEESCCTTCEEEEEETTEEEC----------CSCC-----CCEEEEETTC-
T ss_pred             CCCcEee-eeeEEECCC-----CeEEEEEEEcCCCCCCEEEEEECCeEcC----------CCCcEEEECCeEEEEEccC-
Confidence            4688884 446777777     679999999887 889999999998763          22233332  347888875 


Q ss_pred             cccCCeeEEEEeecCceeeEeeeeEEeeeeecccccCCCCceeecCCCeEEEecC---------CCCCCcceEEEeeccc
Q psy14896        265 QVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDP---------PTNYPGVNYYWARDYF  335 (813)
Q Consensus       265 ~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~---------~~~~p~~~v~W~k~~~  335 (813)
                      +.+|+|.|+|.|.|..|.. +..+.|.|...+.+........+..|+.+.|.|.+         ..+.|.+.++|+|+|.
T Consensus        69 ~~~d~G~Y~C~~~n~~g~~-~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~  147 (317)
T 2y25_A           69 SKKDAGIYEVILKDDRGKD-KSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGS  147 (317)
T ss_dssp             CSTTCSCEEEEEESSSCEE-EEEECCSTHHHHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSS
T ss_pred             CcccCeEEEEEEECCCCcE-EEEEEEEEecCccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCE
Confidence            8999999999999999976 55566766555443333333344455566666653         3337999999999998


Q ss_pred             cccccCCccEEEccCc---cEEEeeeeecCCeeeEEEEeeecccc
Q psy14896        336 PNFVEEDKRVFVSYDG---ALYFSALEQIDAGNYSCNVQSKVSDT  377 (813)
Q Consensus       336 ~~~~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~n~~g~~  377 (813)
                      ++.  ...++.+...+   .|.|.+++.+|+|.|+|.|.|..|..
T Consensus       148 ~~~--~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  190 (317)
T 2y25_A          148 AIR--YSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGH  190 (317)
T ss_dssp             BCC--CCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEE
T ss_pred             ECC--CCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceE
Confidence            853  34455544443   49999999999999999999977643

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.97  E-value=2.3e-29  Score=277.44  Aligned_cols=320  Identities=14%  Similarity=0.147  Sum_probs=204.4

Q ss_pred             ccccCeEEEEEeeccC--CCcEEEeecc--ccccceecc-------ccCCCCCceEEee------CCeEEEeCCCCCCCC
Q psy14896        480 SILNDITLSCYAGGYP--NPSYEWFKED--YVQDRLVAN-------LIDPLSDKRFTLS------GGNLIINDPRQVEDR  542 (813)
Q Consensus       480 ~~g~~~~l~C~~~g~p--~~~v~W~k~~--~~~~~~~~~-------~~~~~~~~~~~~~------~~~l~i~~~~~~~d~  542 (813)
                      .+|+.++|.|.+.+.+  .+.+.|||..  +....+...       ........|+.+.      ..+|.|.++ +.+|+
T Consensus        14 ~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v-~~~D~   92 (475)
T 1iga_A           14 KPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSL-RPEDT   92 (475)
T ss_pred             eCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEEECCC-ChhhC
Confidence            7899999999998865  6789999963  222111100       0011123455442      247999997 99999


Q ss_pred             ceEEEEEEcCcee-----EEeecEEEEEee----cccccccCCCceeccCCCceEEeCCCCCCCc-c-EEEEccCCCCCc
Q psy14896        543 GSYHCKASNKFGS-----IISESVQLAFGF----IGEFNLKRAPEIGNQNWGKAMFCDPPTNYPG-V-NYYWARDYFPNF  611 (813)
Q Consensus       543 G~Y~C~a~n~~g~-----~~s~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~-~v~W~k~~~~~~  611 (813)
                      |.|.|.+.|..|.     .....+.|.|..    +|.+.... +....+|+.++|.|.+....|. + .|+|++++....
T Consensus        93 G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~-~~~~~~g~~v~L~C~~~g~~P~~p~~v~W~~~~~~~~  171 (475)
T 1iga_A           93 AVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLS-LCSTQPDGNVVIACLVQGFFPQEPLSVTWSESGQGVT  171 (475)
T ss_pred             EEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecC-ccccCCCCeEEEEEEEeeecCCCceEEEEcCCCcccc
Confidence            9999999998652     223345676653    23222221 2223689999999999433465 4 999999985421


Q ss_pred             ccCCCeEEEeeC------ccEEEEeecccCCeeEEEEEEeeecCccccCceeeEEEccCCCcc----------ccccCCC
Q psy14896        612 VEEDKRVFVSYD------GALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQ----------QLKFPNN  675 (813)
Q Consensus       612 ~~~~~~~~~~~~------~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~----------~~~~p~~  675 (813)
                      ...........+      +.|.|..+..+|+|.|+|.|.|..+..  ....+.|.|...+...          ....|..
T Consensus       172 ~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~--~~~~v~l~V~~~~~~~~~~~~~~~~~~~~~p~v  249 (475)
T 1iga_A          172 ARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPS--QDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRL  249 (475)
T ss_pred             eEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCc--eeeeEecccccCcccccccccccCCCCCCCcEE
Confidence            111111110122      248888888899999999999998632  1222333332211100          0000110


Q ss_pred             -CCCCCCcCCCCCCeEEEEEEecCCCC---CeEEEEeCCcccCCCce-----e----eecceEEEECCCCCCCCEEEEEE
Q psy14896        676 -FPKTFPEAPKAGDKVRLECVAFGYPV---PSYNWTRRGSPLPRNAY-----F----ENFNRILTIPNVKVEDQGEYICR  742 (813)
Q Consensus       676 -~~~~~~~~~~~G~~v~l~C~~~g~P~---p~i~W~k~g~~l~~~~~-----~----~~~~~~L~i~~v~~~d~G~Y~C~  742 (813)
                       ...+....+.+|++++|.|.+.|.|+   +.|+|  ++..+.....     .    ....+.|.|.++..+|+|.|+|.
T Consensus       250 ~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~  327 (475)
T 1iga_A          250 SLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCT  327 (475)
T ss_pred             EEcCCChHHhccCCceEEEEEEEcccCCCceEEEE--CCCCcCCccccCceECCCCCEEEEEEEEEchHHhccCCcEEEE
Confidence             01111123689999999999998754   69999  4444432110     0    01345799999999999999999


Q ss_pred             EEcCCCceEEEEEEE---EEcCCcccccC-CceeecCCCeEEEEEEEcccCC--ceEEEEECCEecccc
Q psy14896        743 ASNDRSALESSVTIS---IQAEPNFTIPL-TDKHMDNQADLTWTCEAFGVPD--VTYSWFRNGELGHQM  805 (813)
Q Consensus       743 a~N~~G~~~~~~~l~---V~~~P~~~~~~-~~~~~~~g~~~~l~C~~~g~p~--~~v~W~k~g~~l~~~  805 (813)
                      |.|..|.......|.   +..+|.+...+ ....+.+|+.++|.|.+.|.++  +.|.|+|||++|..+
T Consensus       328 a~n~~~~~~~~~~v~~~~~~~~P~v~~~~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~  396 (475)
T 1iga_A          328 AAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPRE  396 (475)
T ss_pred             EEcCCCCCceEEEeecCCCCCCCeEEEECCChHHhccCCceEEEEEEeeeECCCCEEEEEECCEECCCC
Confidence            999999876655664   35778765433 3334778999999999999643  599999999999765

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.97  E-value=3.1e-30  Score=268.30  Aligned_cols=259  Identities=14%  Similarity=0.165  Sum_probs=186.6

Q ss_pred             ccccCeEEEEEee-ccCCCcEEEeeccccccceeccccCCCCCceEEe--eC--CeEEEeCCCCCCCCceEEEEEEcCce
Q psy14896        480 SILNDITLSCYAG-GYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL--SG--GNLIINDPRQVEDRGSYHCKASNKFG  554 (813)
Q Consensus       480 ~~g~~~~l~C~~~-g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~--~~--~~l~i~~~~~~~d~G~Y~C~a~n~~g  554 (813)
                      .+|+.+.|.|.+. +.|.+.|.|+|++..+.        .  ..++.+  .+  .+|.|.++ ..+|+|.|+|.|.|..|
T Consensus        14 ~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~--------~--~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~~~n~~g   82 (312)
T 2y23_A           14 DDDGVISLNFECDKMTPKSEFSWSKDYVSTE--------D--SPRLEVESKGNKTKMTFKDL-GMDDLGIYSCDVTDTDG   82 (312)
T ss_dssp             CTTCCEEEEEECSSCCTTCCEEEEETTEECT--------T--CTTEEEEEETTEEEEEESSC-CGGGCEEEEEEESSSCC
T ss_pred             ecCCeEEEEEEEeCCCCCcEEEEEECCEECC--------C--CCCEEEEEeCCEEEEEECcC-CccCCEEEEEEEEeCCC
Confidence            6789999999985 68999999999997642        1  223333  23  58999997 99999999999999888


Q ss_pred             eEEeecEEEEEee------------cccccccCC-CceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEe
Q psy14896        555 SIISESVQLAFGF------------IGEFNLKRA-PEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVS  621 (813)
Q Consensus       555 ~~~s~~~~l~v~~------------~p~~~~~~~-~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~  621 (813)
                      ...  ...+.|..            +|.+..... ...+.+|+.++|.|.+..+.|.+.++|+|++.+  +....++.+.
T Consensus        83 ~~~--s~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~--i~~~~~~~~~  158 (312)
T 2y23_A           83 IAS--SYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKE--IFEGPKYKMH  158 (312)
T ss_dssp             CCE--EEEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEE--ECSSSSCEEE
T ss_pred             cEE--EEEEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEE--CeeCCcEEEE
Confidence            643  34555542            444433332 566788999999999954899999999999976  3344444444


Q ss_pred             eCc-----cEEEEeecccCCeeEEEEEEeeecCccccCceeeEEEccCCC-------------ccccccCCCCCCCCCcC
Q psy14896        622 YDG-----ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSN-------------FQQLKFPNNFPKTFPEA  683 (813)
Q Consensus       622 ~~~-----~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~-------------~~~~~~p~~~~~~~~~~  683 (813)
                      .+.     +|.|.+++.+|+|.|+|.|.|..+..     ...+.+.....             ......|.+. ......
T Consensus       159 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~  232 (312)
T 2y23_A          159 IDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATN-----HSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFV-EYLSWE  232 (312)
T ss_dssp             EETTTTEEEEEESCCCGGGCEEEEEEEESSSCEE-----EEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEE-EEEEEE
T ss_pred             EccCCCEEEEEEccCCcccCEeEEEEEEeCCceE-----EEEEEEcchhhhhhcccccccccchhhccCCcee-ecceEE
Confidence            332     29999999999999999997643221     12233311000             0000001110 111246


Q ss_pred             CCCCCeEEEEEEecCCCCC-eEEEEeCCcccCCCceee--ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896        684 PKAGDKVRLECVAFGYPVP-SYNWTRRGSPLPRNAYFE--NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ  759 (813)
Q Consensus       684 ~~~G~~v~l~C~~~g~P~p-~i~W~k~g~~l~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  759 (813)
                      +.+|++++|.|.+.|.|+| .|+|+|+|..+..+.++.  .....|.|.+++.+|+|.|+|.|.|..|..++++.|+|+
T Consensus       233 v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~i~  311 (312)
T 2y23_A          233 VTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE  311 (312)
T ss_dssp             EETTTEEEEEEEEESCCSSCEEEEEETTEEEEEECCC----CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEEECSC
T ss_pred             EeCCCEEEEEEEEcCCCCCCEEEEeeCCEECCCCCcEEEECCEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEEec
Confidence            7899999999999999998 999999999987544332  334689999999999999999999999999999999875

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.97  E-value=4.7e-29  Score=256.16  Aligned_cols=272  Identities=17%  Similarity=0.257  Sum_probs=198.0

Q ss_pred             CCCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCcccc
Q psy14896        188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE  267 (813)
Q Consensus       188 ~~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~  267 (813)
                      .+|.|...+.+..+.+|     ++++|.|.+.|    .|.|+|+|..+             ......+++|.|.+. +.+
T Consensus        11 ~~P~i~~~~~~~~v~~G-----~~v~l~C~~~~----~i~W~~~~~~~-------------~~~~~~~~~L~i~~~-~~~   67 (290)
T 2o26_X           11 SPPSIHPAQSELIVEAG-----DTLSLTCIDPD----FVRWTFKTYFN-------------EMVENKKNEWIQEKA-EAT   67 (290)
T ss_dssp             -CCEESSCSSEEEEETT-----SCEEEEEECTT----EEEEEEECSSS-------------CEEEECSSEEEETTC-CGG
T ss_pred             CCCEEeCCCCeEEEcCC-----CcEEEEECCCC----cEEEecCCcce-------------eeecCCCceEEEecc-CHH
Confidence            46889888888888887     66999999988    99999999754             111223467888875 899


Q ss_pred             CCeeEEEEeecCceeeEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCc-ceEEE-eeccccccccCCccE
Q psy14896        268 DRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPG-VNYYW-ARDYFPNFVEEDKRV  345 (813)
Q Consensus       268 d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~-~~v~W-~k~~~~~~~~~~~~~  345 (813)
                      |+|.|+|.|.|  |.  +..+.|.|..+|.+........+.+|+.++|.|.+. + |. +.++| ++||.++  ....++
T Consensus        68 d~G~Y~C~~~n--g~--~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~l~C~~~-~-p~~~~v~W~~~~g~~l--~~~~~~  139 (290)
T 2o26_X           68 RTGTYTCSNSN--GL--TSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLT-D-PQVSQYSLIECDGKSL--PTDLTF  139 (290)
T ss_dssp             GCEEEEEEESS--SC--EEEEEEEEECSSCCBCCCCCEEEETTSCEEECCCBS-C-CSCEEEEEEETTSCCC--CTTCEE
T ss_pred             hCeEEEEEeeC--Cc--cEEEEEEEeCCCcccccccceEEecCCeEEEeCcCC-C-CCCceEEEEeCCCcCC--CCCCce
Confidence            99999999999  54  567888888777766666677788999999999975 4 87 99999 5788764  456677


Q ss_pred             EEccCccEEEeeeeecCCe-eeEEEEeeeccccCCCCCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEEEEe
Q psy14896        346 FVSYDGALYFSALEQIDAG-NYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF  424 (813)
Q Consensus       346 ~~~~~~~L~i~~v~~~D~G-~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~~  424 (813)
                      ....++.|.|.++..+|+| .|+|.|.|..+.  ..+..+.|.|...+.    .+|..........+.+|+.+.|.|.+.
T Consensus       140 ~~~~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~--~~s~~~~l~V~~~~~----~~P~i~~~~~~~~v~~G~~v~l~C~~~  213 (290)
T 2o26_X          140 VPNPKAGITIKNVKRAYHRLCVRCAAQRDGTW--LHSDKFTLKVREAIK----AIPVVSVPETSHLLKKGDTFTVVCTIK  213 (290)
T ss_dssp             EEETTTEEEEESCCGGGTTCEEEEEEEETTEE--EECCCEEEEEECCCC----SCCEEECSCSBCCCCTTCCEEEEEEEE
T ss_pred             eeCCCCCEEEecccHHHCCCEEEEEEEECCce--EEeEEEEEEEEeCCC----CCCccccCCCcceEecCCcEEEEEEEe
Confidence            7777889999999999999 999999997443  223347777763111    011111112234789999999999999


Q ss_pred             ecCCCe-eeEeecCCcCC----CCceeccccceEEEcccccccceEEeCCCceEecccccccccCeEEEEEeeccCCCcE
Q psy14896        425 GYPVPS-YNWTRRGSPLP----RNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSY  499 (813)
Q Consensus       425 g~p~p~-i~W~~~~~~l~----~~~~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v  499 (813)
                      |.|.|. +.|++++..+.    ....                                                      
T Consensus       214 g~p~p~~i~W~~~~~~~~~~~~~~~~------------------------------------------------------  239 (290)
T 2o26_X          214 DVSTSVNSMWLKMNPQPQHIAQVKHN------------------------------------------------------  239 (290)
T ss_dssp             ESSTTCEEEEEEESSSEEECCCEECC------------------------------------------------------
T ss_pred             cCCcceeEEEecCCCCCccceeeccc------------------------------------------------------
Confidence            999996 99999987741    1000                                                      


Q ss_pred             EEeeccccccceeccccCCCCCceEEeeCCeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEEeecc
Q psy14896        500 EWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIG  569 (813)
Q Consensus       500 ~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~p  569 (813)
                      ..+.+                 .......+.|.|.++ ..+|+|.|+|.|.|..|.. +..+.|.|..+|
T Consensus       240 ~~~~~-----------------~~~~~~~~~L~I~~v-~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~~~P  290 (290)
T 2o26_X          240 SWHRG-----------------DFNYERQETLTISSA-RVDDSGVFMCYANNTFGSA-NVTTTLKVVEKG  290 (290)
T ss_dssp             EEEEE-----------------TTEEEEEEEEEESSC-CSSSCEEEEEEEECSSCEE-EEEEEECC----
T ss_pred             ccccC-----------------ceeeEEEEEEEEcCC-CcccCeEEEEEEeCCCCcE-EEEEEEEEEeCC
Confidence            00000                 001123458999997 9999999999999999988 455777766543

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.97  E-value=1.1e-29  Score=256.97  Aligned_cols=243  Identities=15%  Similarity=0.182  Sum_probs=183.5

Q ss_pred             cccccCeEEEEEeec-cCCC--cEEEeeccccccceeccccCCCCCceEEeeCCeEEEeCC--CCCCCCce--EEEEEEc
Q psy14896        479 RSILNDITLSCYAGG-YPNP--SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDP--RQVEDRGS--YHCKASN  551 (813)
Q Consensus       479 ~~~g~~~~l~C~~~g-~p~~--~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~--~~~~d~G~--Y~C~a~n  551 (813)
                      +.+|+.++|.|.+.| .|.+  .|+|+|+|..+..            .....+..+.+...  ...+|+|.  |+|.|.|
T Consensus        15 v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~------------~~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n   82 (265)
T 2oz4_A           15 LEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP------------TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVIL   82 (265)
T ss_dssp             EETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC------------EEEECSSEEEEEEEEEECGGGCEEEEEEEEEEE
T ss_pred             EecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc------------eEeeCCCeEEEEeecccccccCCcceEEEEEec
Confidence            478999999999999 8877  9999999965421            33444555655442  15678774  9999999


Q ss_pred             CceeEEeecEEEEEeecccccccCCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCccEEEEee
Q psy14896        552 KFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSAL  631 (813)
Q Consensus       552 ~~g~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~  631 (813)
                      ..|.. +..+.|.|...|.+.+......+.+|+.++|.|.+.   |.+.|+|  +|.++..  ..     ..+.|.|..+
T Consensus        83 ~~~~~-~~~~~l~V~~~p~p~~~~~~~~v~~G~~v~l~C~~~---p~~~i~W--~g~~~~~--~~-----~~~~l~i~~~  149 (265)
T 2oz4_A           83 GNQSQ-ETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAH---PRAKVTL--NGVPAQP--LG-----PRAQLLLKAT  149 (265)
T ss_dssp             TTEEE-EEEEEEEEECCCCCEEEESCSEEETTCEEEEEEECC---TTSEEEE--SSCSSSC--CS-----SEECCEEECC
T ss_pred             CCCCc-EEEEEEEEeCCCCceeecCCceecCCCcEEEEEEcc---CCCEEEE--CCEEccC--CC-----CcEEEEEccc
Confidence            98886 455788886644444444566678899999999983   8999999  7765411  11     2356899999


Q ss_pred             cccCCeeEEEEEEeee-cCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCC
Q psy14896        632 EQIDAGNYSCNVQSKV-SDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRG  710 (813)
Q Consensus       632 ~~~d~G~Y~C~a~n~~-g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g  710 (813)
                      ..+|+|.|+|.|.|.. |........+.|.|..+|.+.....|      ....+.+|+.++|.|.+.|+|.|.|+|+|+|
T Consensus       150 ~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p------~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~  223 (265)
T 2oz4_A          150 PEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCP------GNWTWPENSQQTPMCQAWGNPLPELKCLKDG  223 (265)
T ss_dssp             GGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSC------SEEEEETTCEECCCCCCEEESCCEEEEEETT
T ss_pred             cccCCceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCC------CccEEcCCCeEEEEeECccCCCCeEEEEECC
Confidence            9999999999998765 65544445678899888876443222      1246789999999999999999999999999


Q ss_pred             cccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcC
Q psy14896        711 SPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAE  761 (813)
Q Consensus       711 ~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~  761 (813)
                      ..+...       ..|.  .++.+|+|.|+|+|.|..|..+.++.|.|+.|
T Consensus       224 ~~~~~~-------g~~~--~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~p  265 (265)
T 2oz4_A          224 TFPLPI-------GESV--TVTRDLEGTYLCRARSTQGEVTREVTVNVLSP  265 (265)
T ss_dssp             TEECCT-------TSCE--ECCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             cccCCC-------CcEE--EeehhhCeEEEEEEECCCCcEEEEEEEEEecC
Confidence            833222       1222  37889999999999999999999999999864

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.97  E-value=3.5e-30  Score=271.23  Aligned_cols=238  Identities=16%  Similarity=0.203  Sum_probs=181.6

Q ss_pred             CCCceeeCCCceeecCCCccccccEEEEeeec-------cCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEE
Q psy14896        188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAG-------GYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLII  260 (813)
Q Consensus       188 ~~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~-------g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i  260 (813)
                      ..|.|...|.+..+.+|     +++.|.|.+.       +.|.+.|.|+|+|..+.      +......++...+++|.|
T Consensus        17 ~~p~~~~~~~~~~v~~G-----~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~------~~~~~~~~~~~~~~~L~i   85 (339)
T 3o4o_C           17 SCRFRGRHYKREFRLEG-----EPVALRCPQVPYWLWASVSPRINLTWHKNDSART------VPGEEETRMWAQDGALWL   85 (339)
T ss_dssp             -CEEEEECSCCEEEETT-----BCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSC------CSCCSSSCEEEETTEEEE
T ss_pred             hhHhhCcCceEEEEECC-----ccEEEEeccccccccccCCCCceEEEEECCCCcc------cCccccccEEeeCCeEEE
Confidence            45889999999999888     6699999998       89999999999997641      122225566777899999


Q ss_pred             cCCccccCCeeEEEEeecCceeeEeeeeEEeeeeecccc--cCCCCceeecCCCeEEEecC----CCCCCcceEEEeecc
Q psy14896        261 NDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFN--LKRAPEIGNQNWGKAMFCDP----PTNYPGVNYYWARDY  334 (813)
Q Consensus       261 ~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~--~~~~~~~~~~~~~~~l~C~~----~~~~p~~~v~W~k~~  334 (813)
                      .+. +.+|+|.|+|.|.|..|.. +..+.|.|...+...  ....+..+.+|+.++|.|.+    ..|.|.+.+.|+|+|
T Consensus        86 ~~v-~~~D~G~Y~C~~~n~~g~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g  163 (339)
T 3o4o_C           86 LPA-LQEDSGTYVCTTRNASYCD-KMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDS  163 (339)
T ss_dssp             SSB-CTTCCEEEECCEEETTEEE-EEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESS
T ss_pred             CCC-CcccCEEEEEEEECCcceE-EEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCC
Confidence            885 8999999999999998866 677888887665533  22344577889999999995    578899999999999


Q ss_pred             ccccccCCccEEEccC-ccEEEeeeeecCCeeeEEEEeeeccccCC-CCCceeeEEccCCcccccccCCCCCCCCCcCCC
Q psy14896        335 FPNFVEEDKRVFVSYD-GALYFSALEQIDAGNYSCNVQSKVSDTGR-NGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK  412 (813)
Q Consensus       335 ~~~~~~~~~~~~~~~~-~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~-~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~  412 (813)
                      .++.. ...++....+ +.|.|.++..+|+|.|+|.|.|..|.... .+..+.|.|...+..   .+|....+.....+.
T Consensus       164 ~~~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~---~~P~i~~~~~~~~v~  239 (339)
T 3o4o_C          164 LLLDK-DNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEE---TIPVIISPLKTISAS  239 (339)
T ss_dssp             CBCCT-TCSSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCC---CCCEECCCSCCCCCC
T ss_pred             eeCCC-CCceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCC---CCCEEecCCceeEec
Confidence            88643 3345555544 58999999999999999999998874332 234577777654321   122222223345789


Q ss_pred             CCCcEEEEEEE---eecC-CCeeeEeecCCcCCC
Q psy14896        413 AGDKVRLECVA---FGYP-VPSYNWTRRGSPLPR  442 (813)
Q Consensus       413 ~g~~~~l~C~~---~g~p-~p~i~W~~~~~~l~~  442 (813)
                      +|+.+.|.|.+   .|+| .+.+.|++++.++..
T Consensus       240 ~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~  273 (339)
T 3o4o_C          240 LGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIES  273 (339)
T ss_dssp             CCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSS
T ss_pred             cCCCEEEEEEEECCCCCCCCceEEEEECCeeccc
Confidence            99999999999   8888 789999999888754

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.97  E-value=5.3e-30  Score=268.94  Aligned_cols=268  Identities=18%  Similarity=0.213  Sum_probs=193.3

Q ss_pred             ccccCeEEEEEeecc----CCCcEEEeeccccccceec-------cccCCCCCceEEee-----CCeEEEeCCCCCCCCc
Q psy14896        480 SILNDITLSCYAGGY----PNPSYEWFKEDYVQDRLVA-------NLIDPLSDKRFTLS-----GGNLIINDPRQVEDRG  543 (813)
Q Consensus       480 ~~g~~~~l~C~~~g~----p~~~v~W~k~~~~~~~~~~-------~~~~~~~~~~~~~~-----~~~l~i~~~~~~~d~G  543 (813)
                      .+|+.++|.|.+.+.    |.+.+.|+|++........       .........++.+.     +++|.|.++ +.+|+|
T Consensus        27 ~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v-~~~D~G  105 (331)
T 3u83_A           27 FIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRL-ELEDEG  105 (331)
T ss_dssp             ETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCCEEECSC-CGGGCE
T ss_pred             EecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCceEEEccc-CcccCc
Confidence            789999999999886    4557999996632111000       01122233455442     468999997 999999


Q ss_pred             eEEEE-EEcCceeEEeecEEEEEeecccccc--cCCCceeccC---CCceEEeCCCCCCCccEEEEccCCCCCcccCCCe
Q psy14896        544 SYHCK-ASNKFGSIISESVQLAFGFIGEFNL--KRAPEIGNQN---WGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKR  617 (813)
Q Consensus       544 ~Y~C~-a~n~~g~~~s~~~~l~v~~~p~~~~--~~~~~~~~~g---~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~  617 (813)
                      .|+|. +.+..|.. +..+.|.|..+|.+..  ......+.+|   +.++|.|.+..+.|.+.++|+|++.....   ..
T Consensus       106 ~Y~C~~~~~~~~~~-~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~---~~  181 (331)
T 3u83_A          106 VYICEFATFPTGNR-ESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAE---YQ  181 (331)
T ss_dssp             EEEEEEEEETTEEE-EEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEEE---EE
T ss_pred             EEEEEEEecCCCcc-EEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEcCCCCccc---cc
Confidence            99998 55556654 5568888888776543  3334455666   66899998437899999999997432111   11


Q ss_pred             EEEeeCc------cEEEEeecccCCeeEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEE
Q psy14896        618 VFVSYDG------ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVR  691 (813)
Q Consensus       618 ~~~~~~~------~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~  691 (813)
                      .....++      .|.|.++..+|+|.|+|.|.|..|...   ..+.|.|..+|.+...       ......+.+|++++
T Consensus       182 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~---~~~~l~V~~~P~~~~~-------~~~~~~~~~g~~~~  251 (331)
T 3u83_A          182 EIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFK---ESLTLNVQYEPEVTIE-------GFDGNWYLQRMDVK  251 (331)
T ss_dssp             EEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEE---EEEECCEEEEEEEEEE-------CCCSCCBTTCCCEE
T ss_pred             eeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcce---eeEEEEEecCCeEEEe-------cCCCceEeCCCeEE
Confidence            1122233      377777799999999999999987543   3477788777754422       11224578999999


Q ss_pred             EEEEecCCCCCe-EEEEeCCcccCCCceeeecceEEEEC-CCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCCcc
Q psy14896        692 LECVAFGYPVPS-YNWTRRGSPLPRNAYFENFNRILTIP-NVKVEDQGEYICRASNDRSALESSVTISIQAEPNF  764 (813)
Q Consensus       692 l~C~~~g~P~p~-i~W~k~g~~l~~~~~~~~~~~~L~i~-~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~~  764 (813)
                      |.|.+.|.|.|. |+|+|++..+.....+  .+++|.|. +++.+|+|.|+|.|.|.+|..+.++.|.|...+..
T Consensus       252 l~C~~~g~p~p~~i~W~~~~~~~~~~~~~--~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~  324 (331)
T 3u83_A          252 LTCKADANPPATEYHWTTLNGSLPKGVEA--QNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEAAAL  324 (331)
T ss_dssp             EEEEEEEESCCCEEEEEETTBSCCTTEEE--ETTEEEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCBC----
T ss_pred             EEEeCcCCCCCCEEEEEECCCccccccee--cCcEEEEeCCCccccCeEEEEEEEeccccceEEEEEEEeccchh
Confidence            999999999998 9999999998766443  35789999 99999999999999999999999999999987654

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.97  E-value=6.9e-30  Score=265.92  Aligned_cols=286  Identities=15%  Similarity=0.193  Sum_probs=194.3

Q ss_pred             ceeecCCCccccccEEEEeeeccCC-CCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEe
Q psy14896        198 DVVFDLSKRSILNDITLSCYAGGYP-NPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKA  276 (813)
Q Consensus       198 ~~~v~~g~~~~g~~v~l~C~~~g~P-~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a  276 (813)
                      .+.+.+|     +++.|.|.+.|.| .+.|.|||+|..+.      +......++...+++|.|.+. +.+|+|.|+|.|
T Consensus        14 ~~~v~~G-----~~v~L~C~~~~~~~~~~v~W~k~~~~~~------~~~~~~~~~~~~~~~L~i~~v-~~~D~G~Y~C~a   81 (315)
T 1itb_B           14 ILVSSAN-----EIDVRPCPLNPNEHKGTITWYKDDSKTP------VSTEQASRIHQHKEKLWFVPA-KVEDSGHYYCVV   81 (315)
T ss_dssp             CCEEETT-----SCCCCBCCCCSCCCSSCCCEECTTSCSC------SCCCTTSSSEECSSBEECTTC-CGGGCSCCEECC
T ss_pred             EEEEcCC-----CcEEEEeeccCcCCCceEEEEeCCCcCc------cccccCCcEeccCCeEEECCC-ChhhCEEEEEEE
Confidence            4566566     7799999999887 88999999997541      223445667777888988885 899999999999


Q ss_pred             ecCceeeEeeeeEEeeee-ecccccCC---CCceeecCCCeEEEecCC-----CCCCcceEEEeeccccccccCCccEEE
Q psy14896        277 SNKFGSIISESVQLAFGF-IGEFNLKR---APEIGNQNWGKAMFCDPP-----TNYPGVNYYWARDYFPNFVEEDKRVFV  347 (813)
Q Consensus       277 ~n~~g~~~s~~~~l~v~~-~~~~~~~~---~~~~~~~~~~~~l~C~~~-----~~~p~~~v~W~k~~~~~~~~~~~~~~~  347 (813)
                      .|..|.. ...+.+.+.. +|.+....   ....+..|+.+.|.|.+.     .|.|.+.++|+|++.++.. ...++ .
T Consensus        82 ~n~~g~~-~~~~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~-~~~~~-~  158 (315)
T 1itb_B           82 RNSSYCL-RIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLL-DNIHF-S  158 (315)
T ss_dssp             CSSSCCC-CEECCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCC-CSSSE-E
T ss_pred             eCCceEE-EEEEEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCC-ccceE-e
Confidence            9998865 3344444332 23332221   234677899999999962     7899999999999988643 22333 4


Q ss_pred             ccCccEEEeeeeecCCeeeEEEEe-eeccccCCCCCceeeEEccCCcccccccCCCCCCCC-CcCCCCCCcEEEEEEEee
Q psy14896        348 SYDGALYFSALEQIDAGNYSCNVQ-SKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTF-PEAPKAGDKVRLECVAFG  425 (813)
Q Consensus       348 ~~~~~L~i~~v~~~D~G~Y~C~a~-n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~-~~~v~~g~~~~l~C~~~g  425 (813)
                      ..++.|.|.+++.+|+|.|+|.|. |..|.....+..+.+.+.....   ...|....+.. ...+.+|+.+.|.|.+.|
T Consensus       159 ~~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~---~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g  235 (315)
T 1itb_B          159 GVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENK---PTRPVIVSPANETMEVDLGSQIQLICNVTG  235 (315)
T ss_dssp             EETTEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCC---CCCCEECSCCSEEEECCSSSCEEEEEEEEE
T ss_pred             ecCceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCC---CCCCEEecCCCCcEEEeCCCcEEEEEEEec
Confidence            456799999999999999999999 7776543222234443432111   11111111111 246899999999999999


Q ss_pred             cCCCeeeEeecCCcCCCCceeccccceEEEcccccccceEEeCCCceEecccccccccCeEEEEEeeccCCCcEEEeecc
Q psy14896        426 YPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKED  505 (813)
Q Consensus       426 ~p~p~i~W~~~~~~l~~~~~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~~  505 (813)
                      .|.|.+.|+++|..+.......... ...                                                   
T Consensus       236 ~P~p~i~W~~~g~~i~~~~~~~~~~-~~~---------------------------------------------------  263 (315)
T 1itb_B          236 QLSDIAYWKWNGSVIDEDDPVLGED-YYS---------------------------------------------------  263 (315)
T ss_dssp             CTTSEEEEEETTEECCTTCSSEEEE-EEE---------------------------------------------------
T ss_pred             CCCCeeEEEECCEECCccccccccc-cee---------------------------------------------------
Confidence            9999999999998886542111000 000                                                   


Q ss_pred             ccccceeccccCCCCCceEEeeCCeEEEeCCCCCCC-CceEEEEEEcCceeEEeecEEEEE
Q psy14896        506 YVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED-RGSYHCKASNKFGSIISESVQLAF  565 (813)
Q Consensus       506 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d-~G~Y~C~a~n~~g~~~s~~~~l~v  565 (813)
                                +......+.....+.|.|.++ ..+| +|.|+|.|.|..|.... .+.|.|
T Consensus       264 ----------~~~~~~~~~~~~~~~L~i~~v-~~~d~~G~Y~C~a~N~~G~~~~-~~~l~v  312 (315)
T 1itb_B          264 ----------VENPANKRRSTLITVLNISEI-ESRFYKHPFTCFAKNTHGIDAA-YIQLIY  312 (315)
T ss_dssp             ----------ECCSSCGGGEEEEEEEEESSC-CGGGGTSCEEEEEECTTCCEEE-EEEEEC
T ss_pred             ----------eeccCCCceeEEEEEEEEeec-CHHHcCCceEEEEecCCCceeE-EEEEEe
Confidence                      000111122234458999997 8999 99999999999998743 366655

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.97  E-value=3e-29  Score=253.51  Aligned_cols=239  Identities=19%  Similarity=0.220  Sum_probs=183.3

Q ss_pred             ccccCeEEEEEeeccCCC-cEEEeeccccccceeccccCCCCCceEEeeCCeEEEeCCCCCCCCceEEEEEEcCceeEEe
Q psy14896        480 SILNDITLSCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIIS  558 (813)
Q Consensus       480 ~~g~~~~l~C~~~g~p~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s  558 (813)
                      .+|+.+.|.|.+.+.|.+ .+.|+|+|..+..                .+.+|.|.++ ..+|+|.|+|.|.|..+.   
T Consensus        14 ~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~----------------~~~~l~i~~~-~~~d~G~Y~C~~~~~~~s---   73 (262)
T 3rjd_A           14 FQEETVTLHCEVLHLPGSSSTQWFLNGTATQT----------------STPSYRITSA-SVNDSGEYRCQRGLSGRS---   73 (262)
T ss_dssp             ETTCCEEEEEECSSCCCTTCEEEEETTEECSC----------------CSSEEEESSC-CGGGCEEEEEEESSSCCC---
T ss_pred             eCCCeEEEEEECCCCCCCceEEEEECCEEeec----------------cCCeEEEecC-CcccCeEEEEEEecCCcc---
Confidence            789999999999999988 9999999965311                2568999997 999999999999987654   


Q ss_pred             ecEEEEEeecccccccCCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCccEEEEeecccCCee
Q psy14896        559 ESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGN  638 (813)
Q Consensus       559 ~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  638 (813)
                      ..+.|.|..++. ........+.+|+.++|.|.+..+.|.+.+.|+|++..+.       ....++.|.|.+++.+|+|.
T Consensus        74 ~~~~l~v~~~~~-~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~-------~~~~~~~l~i~~~~~~d~G~  145 (262)
T 3rjd_A           74 DPIQLEIHRGWL-LLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFK-------FFHWNSNLTILKTNISHNGT  145 (262)
T ss_dssp             CCEEEEEECSSE-EEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEE-------EEEECCCEEESSCCGGGCEE
T ss_pred             ccEEEEEeccce-EecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCcccc-------ccCCCCeEEEEECChhhCEE
Confidence            346777765543 3344456677899999999987788999999999986521       12236789999999999999


Q ss_pred             EEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCC-C----eEEEEeCCccc
Q psy14896        639 YSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPV-P----SYNWTRRGSPL  713 (813)
Q Consensus       639 Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~-p----~i~W~k~g~~l  713 (813)
                      |+|.|.|..+..   ...+.|.|...+....+..+.      ...+.+|+.++|.|.+.|.|. |    .+.|+++|..+
T Consensus       146 Y~C~~~n~~~~~---~~~~~l~V~~~~~~p~~~~~~------~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~  216 (262)
T 3rjd_A          146 YHCSGMGKHRYT---SAGISVTVKELFPAPVLNASV------TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTL  216 (262)
T ss_dssp             EEEEEESSSEEE---EECEEEEEECSSCCCEEEESS------CSSEETTCCEEEEEECCCCCC-----EEEEEEETTEEE
T ss_pred             EEEEEeCCCCcc---ccceEEEeccCCCCCeEeecC------ceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEe
Confidence            999999988543   334677777643222222211      256789999999999999986 5    37899999987


Q ss_pred             CCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCce---EEEEEEEEE
Q psy14896        714 PRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSAL---ESSVTISIQ  759 (813)
Q Consensus       714 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~---~~~~~l~V~  759 (813)
                      ...    .....|+|.+++.+|+|.|+|.|.|..|..   +..+.|.|+
T Consensus       217 ~~~----~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~~~~s~~~~l~V~  261 (262)
T 3rjd_A          217 RGR----NTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQVL  261 (262)
T ss_dssp             EEE----ESCCEEEESSCCGGGCEEEEEEEEETTSSCEEECCCEEECEE
T ss_pred             ccc----CCCceEEEEEechhhCeEEEEEEEcccCceEEecCCeEEEEe
Confidence            532    335689999999999999999999999975   334555554

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.96  E-value=6e-29  Score=251.34  Aligned_cols=248  Identities=19%  Similarity=0.216  Sum_probs=181.5

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCC-eEEEeecccccccccccccccCCCccEEeeCCeEEEcCCcccc
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE  267 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p-~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~  267 (813)
                      +|.|+..|.+..+.+|     +++.|.|.+.+.|.+ .|+|+|+|..+..                .+++|.|.+. +.+
T Consensus         1 kP~i~~~p~~~~v~~G-----~~v~l~C~~~~~~~~~~~~W~~~g~~~~~----------------~~~~l~i~~~-~~~   58 (262)
T 3rjd_A            1 KAVITLQPPWVSVFQE-----ETVTLHCEVLHLPGSSSTQWFLNGTATQT----------------STPSYRITSA-SVN   58 (262)
T ss_dssp             CCEEEESSCCSEEETT-----CCEEEEEECSSCCCTTCEEEEETTEECSC----------------CSSEEEESSC-CGG
T ss_pred             CCeEecCCCcEEeeCC-----CeEEEEEECCCCCCCceEEEEECCEEeec----------------cCCeEEEecC-Ccc
Confidence            3788999999888777     669999999998888 9999999976521                1557888875 899


Q ss_pred             CCeeEEEEeecCceeeEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCccEEE
Q psy14896        268 DRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFV  347 (813)
Q Consensus       268 d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~  347 (813)
                      |+|.|+|.|.|..+   +..+.|.|..++ +.+......+.+|+.+.|.|.+..+.|.+.+.|++++..+..       .
T Consensus        59 d~G~Y~C~~~~~~~---s~~~~l~v~~~~-~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~-------~  127 (262)
T 3rjd_A           59 DSGEYRCQRGLSGR---SDPIQLEIHRGW-LLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKF-------F  127 (262)
T ss_dssp             GCEEEEEEESSSCC---CCCEEEEEECSS-EEEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEE-------E
T ss_pred             cCeEEEEEEecCCc---cccEEEEEeccc-eEecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCccccc-------c
Confidence            99999999998766   456777776543 334455667889999999999767889999999999987421       2


Q ss_pred             ccCccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEEEEeecC
Q psy14896        348 SYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYP  427 (813)
Q Consensus       348 ~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p  427 (813)
                      ..++.|.|.+++.+|+|.|+|.|.|..+..   +..+.|.|........+...      ....+.+|+.+.|.|.+.+.|
T Consensus       128 ~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~---~~~~~l~V~~~~~~p~~~~~------~~~~~~~g~~~~l~C~~~~~p  198 (262)
T 3rjd_A          128 HWNSNLTILKTNISHNGTYHCSGMGKHRYT---SAGISVTVKELFPAPVLNAS------VTSPLLEGNLVTLSCETKLLL  198 (262)
T ss_dssp             EECCCEEESSCCGGGCEEEEEEEESSSEEE---EECEEEEEECSSCCCEEEES------SCSSEETTCCEEEEEECCCCC
T ss_pred             CCCCeEEEEECChhhCEEEEEEEeCCCCcc---ccceEEEeccCCCCCeEeec------CceeecCCCeEEEEeEcccCC
Confidence            235689999999999999999999987533   33367777653221111111      123577788888888887777


Q ss_pred             C-CeeeEeecCCcCCCCceeccccceEEEcccccccceEEeCCCceEecccccccccCeEEEEEeeccCCCcEEEeeccc
Q psy14896        428 V-PSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDY  506 (813)
Q Consensus       428 ~-p~i~W~~~~~~l~~~~~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~~~  506 (813)
                      . |.+.|                                                                .+.|++++.
T Consensus       199 ~~p~~~~----------------------------------------------------------------~~~w~~~~~  214 (262)
T 3rjd_A          199 QRPGLQL----------------------------------------------------------------YFSFYMGSK  214 (262)
T ss_dssp             C-----E----------------------------------------------------------------EEEEEETTE
T ss_pred             CCCCccE----------------------------------------------------------------EEEEEeCCc
Confidence            5 55444                                                                245777764


Q ss_pred             cccceeccccCCCCCceEEeeCCeEEEeCCCCCCCCceEEEEEEcCceeEE
Q psy14896        507 VQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSII  557 (813)
Q Consensus       507 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~  557 (813)
                      .+..              ....+.|.|.++ ..+|+|.|+|.|.|..|...
T Consensus       215 ~~~~--------------~~~~~~L~i~~v-~~~d~G~Y~C~a~n~~G~~~  250 (262)
T 3rjd_A          215 TLRG--------------RNTSSEYQILTA-RREDSGLYWCEAATEDGNVL  250 (262)
T ss_dssp             EEEE--------------EESCCEEEESSC-CGGGCEEEEEEEEETTSSCE
T ss_pred             Eecc--------------cCCCceEEEEEe-chhhCeEEEEEEEcccCceE
Confidence            3211              123457999997 99999999999999999743

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.96  E-value=9.2e-30  Score=267.43  Aligned_cols=279  Identities=20%  Similarity=0.246  Sum_probs=116.1

Q ss_pred             CCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCccEEEccCccEEEeeeeecCCeeeEEEEeeeccccCCC
Q psy14896        301 KRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRN  380 (813)
Q Consensus       301 ~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~  380 (813)
                      .+....+.+|+.++|.|.+..+.|.+.+.|+|+|.++  ....++.+ .++.|.|.+++.+|+|.|+|.|.|. |..   
T Consensus        14 ~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~--~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~a~n~-~~~---   86 (334)
T 1ry7_B           14 QQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGL--VPSERVLV-GPQRLQVLNASHEDSGAYSCRQRLT-QRV---   86 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeC--CCcccEEe-ccceEEEeecccccCEEEEEEEEeC-CeE---
Confidence            3566778899999999997655578999999999874  33444443 4678999999999999999999998 432   


Q ss_pred             CCceeeEEccCCccccc--------------ccCCCCCC----CCCcCCCCCCcEEEEEEEeecCCCeeeEeecCCcCCC
Q psy14896        381 GPFFPLKVFPHSNFQQL--------------KFPNNFPK----TFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPR  442 (813)
Q Consensus       381 s~~~~l~v~~~~~~~~~--------------~~~~~~~~----~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~~~~l~~  442 (813)
                      +..+.|.|...+.....              .+|....+    .....+.+|+.+.|.|.+.|.|.|.+.|++++..+..
T Consensus        87 ~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~  166 (334)
T 1ry7_B           87 LCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRG  166 (334)
T ss_dssp             --------------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCT
T ss_pred             EEEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECcc
Confidence            33466777654321100              01111000    0012234455555555554444444455444444322


Q ss_pred             CceeccccceEEEcccccccceEEeCCCceEecccccccccCeEEEEEeeccCCCcEEEeeccccccceeccccCCCCCc
Q psy14896        443 NAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK  522 (813)
Q Consensus       443 ~~~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~  522 (813)
                      ...+                                                                         ...
T Consensus       167 ~~~~-------------------------------------------------------------------------~~~  173 (334)
T 1ry7_B          167 EHRI-------------------------------------------------------------------------GGI  173 (334)
T ss_dssp             TSST-------------------------------------------------------------------------TCC
T ss_pred             cccc-------------------------------------------------------------------------cce
Confidence            1100                                                                         000


Q ss_pred             eEEeeCCeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEEeecc----cccc-cCCCceeccCCCceEEeCCCCCCC
Q psy14896        523 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIG----EFNL-KRAPEIGNQNWGKAMFCDPPTNYP  597 (813)
Q Consensus       523 ~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~p----~~~~-~~~~~~~~~g~~~~l~C~~~~~~p  597 (813)
                      .......+|.|.++ ..+|+|.|+|.|.|..|.. +..+.|.|...+    .+.. .+....+..|+.++|.|.+ .+.|
T Consensus       174 ~~~~~~~~L~i~~v-~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~-~g~p  250 (334)
T 1ry7_B          174 KLRHQQWSLVMESV-VPSDRGNYTCVVENKFGSI-RQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKV-YSDA  250 (334)
T ss_dssp             CCCTTTTEEEECSC-CGGGCCCEEEEEEETTEEE-EEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCC-BCSS
T ss_pred             ecccceEEEEECCC-CcccCEEEEEEEEeCCCCE-EEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEE-ecCC
Confidence            11113468999997 9999999999999999886 444677776532    2222 2345567889999999999 7899


Q ss_pred             ccEEEEcc----CCCCCcccCCCeEEEeeC----------ccEEEEeecccCCeeEEEEEEeeecCccccCceeeEEEcc
Q psy14896        598 GVNYYWAR----DYFPNFVEEDKRVFVSYD----------GALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFP  663 (813)
Q Consensus       598 ~~~v~W~k----~~~~~~~~~~~~~~~~~~----------~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~  663 (813)
                      .+.|.|+|    +|.++.......+.+..+          ++|.|.+++.+|+|.|+|.|.|..|....   .+.|.|..
T Consensus       251 ~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~---~~~l~V~~  327 (334)
T 1ry7_B          251 QPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHH---SAWLVVLP  327 (334)
T ss_dssp             CEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCEEE---EEEEEEEC
T ss_pred             CCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCeEEE---EEEEEEEE
Confidence            99999999    666533222222222211          26999999999999999999999987544   47788876


Q ss_pred             CC
Q psy14896        664 HS  665 (813)
Q Consensus       664 ~p  665 (813)
                      .|
T Consensus       328 ~~  329 (334)
T 1ry7_B          328 AE  329 (334)
T ss_dssp             SC
T ss_pred             CC
Confidence            55

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.96  E-value=2.7e-29  Score=260.52  Aligned_cols=275  Identities=17%  Similarity=0.157  Sum_probs=180.7

Q ss_pred             ceeecCCCccccccEEEEeeecc-CCCCeEEEeecccccccccc-------cccccCCCccEEee-----CCeEEEcCCc
Q psy14896        198 DVVFDLSKRSILNDITLSCYAGG-YPNPSYEWFKEDYVQDRLVA-------NLIDPLSDKRFTLS-----GGNLIINDPR  264 (813)
Q Consensus       198 ~~~v~~g~~~~g~~v~l~C~~~g-~P~p~v~W~k~g~~l~~~~~-------~~~~~~~~~~~~~~-----~~~l~i~~~~  264 (813)
                      ++.+.+|     ++++|.|.+.+ .|.+.|+|+|++........       .........+..+.     +++|.|.+. 
T Consensus         8 ~vtv~~G-----~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v-   81 (308)
T 4fom_A            8 HVTAVWG-----KNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNI-   81 (308)
T ss_dssp             SCEEETT-----SCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSC-
T ss_pred             EeEEEcC-----CcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccC-
Confidence            4555566     77999999965 45568999998764322110       11122223344432     457888885 


Q ss_pred             cccCCeeEEEEeecCceeeEeeeeEEeeeeecccccCCC--CceeecCCCeEEEecCCCCCCcceEEEeeccccccccCC
Q psy14896        265 QVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRA--PEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEED  342 (813)
Q Consensus       265 ~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~--~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~  342 (813)
                      +.+|+|.|+|.|.|..+...+..+.+.+...+.+.....  ......++.+.|.|.+..|.|.+.++|+|++.++.... 
T Consensus        82 ~~~D~G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~-  160 (308)
T 4fom_A           82 GFSDSGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTT-  160 (308)
T ss_dssp             CGGGCEEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEE-
T ss_pred             CHHHCEEEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCccccccc-
Confidence            899999999999986433336667777766665443333  33344556678999877889999999999998753211 


Q ss_pred             ccEEEc----cCccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEE
Q psy14896        343 KRVFVS----YDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVR  418 (813)
Q Consensus       343 ~~~~~~----~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~  418 (813)
                       .....    ..+.|.|..+..+|+|.|+|.|.|..+.... +..+.|.|..+|.+....       .....+.+|+.++
T Consensus       161 -~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~-~~~~~l~V~~~P~~~~~~-------~~~~~~~~g~~v~  231 (308)
T 4fom_A          161 -TSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDI-RYSFILDIQYAPEVSVTG-------YDGNWFVGRKGVN  231 (308)
T ss_dssp             -EECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCE-EEEEECCCCEEEEECCBC-------CCSCEETTCCSCE
T ss_pred             -ceeeeecccccccceEEeeeecCCccEEEEEEccCCCCce-EEeEEEEEecCCeeEEcc-------cceeeeeccccEE
Confidence             11111    1236999999999999999999998765332 223555565554322111       1123466778888


Q ss_pred             EEEEEeecCCC-eeeEeecCCcCCCCceeccccceEEEcccccccceEEeCCCceEecccccccccCeEEEEEeeccCCC
Q psy14896        419 LECVAFGYPVP-SYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP  497 (813)
Q Consensus       419 l~C~~~g~p~p-~i~W~~~~~~l~~~~~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~  497 (813)
                      |.|.+.|+|.| .+.|+|++..+....                                                     
T Consensus       232 l~C~~~g~P~p~~v~W~k~~~~~~~~~-----------------------------------------------------  258 (308)
T 4fom_A          232 LKCNADANPPPFKSVWSRLDGQWPDGL-----------------------------------------------------  258 (308)
T ss_dssp             EECCEEEESCEEEEECCBSSSCCCSSC-----------------------------------------------------
T ss_pred             EEEEEecCCCCcEEEEEECCeECCCcE-----------------------------------------------------
Confidence            88888888877 588888776664321                                                     


Q ss_pred             cEEEeeccccccceeccccCCCCCceEEeeCC-eEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEEeeccc
Q psy14896        498 SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGG-NLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGE  570 (813)
Q Consensus       498 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~p~  570 (813)
                                                 ...++ .|.|.++ ..+|+|.|+|.|.|..|.. +..+.|.|..+|.
T Consensus       259 ---------------------------~~~~~~~l~i~~v-~~~d~G~Y~C~A~N~~G~~-~~~~~l~V~~~P~  303 (308)
T 4fom_A          259 ---------------------------LASDNTLHFVHPL-TFNYSGVYICKVTNSLGQR-SDQKVIYISDPPH  303 (308)
T ss_dssp             ---------------------------BCSTTEEECCSCC-CSCCCSEEEEEEEETTEEE-EEEEECCEECCC-
T ss_pred             ---------------------------EEcCCeEEEECCC-ChhhCEEEEEEEEeCCCcE-EEEEEEEEEcCCC
Confidence                                       01122 3445565 8999999999999999987 4457888877764

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.96  E-value=4.4e-28  Score=253.50  Aligned_cols=219  Identities=15%  Similarity=0.188  Sum_probs=153.8

Q ss_pred             CceeecCCCccccccEEEEeeeccC---------CCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCcccc
Q psy14896        197 TDVVFDLSKRSILNDITLSCYAGGY---------PNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE  267 (813)
Q Consensus       197 ~~~~v~~g~~~~g~~v~l~C~~~g~---------P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~  267 (813)
                      .++.+.+|     +++.|.|.+.+.         |.+.|.|||+|..+..         .+.+  ..+++|.|.+. +.+
T Consensus        37 ~~v~v~eG-----~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~---------~~~~--~~~~~L~i~~v-~~~   99 (329)
T 3oq3_B           37 MNDMAALG-----EPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRP---------LNRR--VKNGDLWIANY-TSN   99 (329)
T ss_dssp             EEEEECTT-----SCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEE---------CSTT--EETTEEEESSC-CGG
T ss_pred             ceEEEECC-----CeEEEEccCCCCccccccccCCCCeeEEEECCCCccc---------cCce--eecceEEEcCC-ChH
Confidence            55666666     779999999874         6689999999976531         1222  45888999885 899


Q ss_pred             CCe-eEEEEeecCceeeEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCC-cceEEEeeccccccccCCccE
Q psy14896        268 DRG-SYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYP-GVNYYWARDYFPNFVEEDKRV  345 (813)
Q Consensus       268 d~G-~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p-~~~v~W~k~~~~~~~~~~~~~  345 (813)
                      |+| .|+|.|.|..|......+.+.+..+|.+........+.+|+.+.|.|.+ .|.| .+.++|+|++.++. ....++
T Consensus       100 D~Gs~Y~C~a~n~~g~~~~~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~-~g~p~~~~i~W~k~~~~l~-~~~~~~  177 (329)
T 3oq3_B          100 DSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGI-LYAKHYNNITWYKNNQELI-IDGTKY  177 (329)
T ss_dssp             GGGCCEEEEEECTTSCEEEEEEEEEECCCCSCEEEEEETTSSTTTCEEEECCC-CSCCCCCEEEEEETTEECC-CSSSSE
T ss_pred             hCCCcEEEEEEeCCCceeeEEEEEEEcCCCcEeccccceEEeCCCcEEEEecc-CCCCCCceEEEEECCccCC-CCCceE
Confidence            999 9999999999875443333333333332222223345678899999985 6788 89999999998863 234455


Q ss_pred             EEccCccEEEeeeeecCCeeeEEEEeee--ccccCCC-CCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEEE
Q psy14896        346 FVSYDGALYFSALEQIDAGNYSCNVQSK--VSDTGRN-GPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECV  422 (813)
Q Consensus       346 ~~~~~~~L~i~~v~~~D~G~Y~C~a~n~--~g~~~~~-s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~  422 (813)
                      ... ++.|.|.+++.+|+|.|+|.|.|.  .|..... +..+.|.|..++......   .  ......+.+|+.+.|.|.
T Consensus       178 ~~~-~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~---~--~~~~~~v~~G~~~~l~C~  251 (329)
T 3oq3_B          178 SQS-GQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKL---I--LDPKINVTIGEPANITCT  251 (329)
T ss_dssp             EEE-TTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEE---E--CCSEEEECTTSCEEEEEE
T ss_pred             ecC-CCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCce---e--cCCeeEEecCCCEEEEEE
Confidence            444 689999999999999999999997  5533221 223667776655321100   0  111256788999999999


Q ss_pred             EeecC---CC-eeeEeecCCcC
Q psy14896        423 AFGYP---VP-SYNWTRRGSPL  440 (813)
Q Consensus       423 ~~g~p---~p-~i~W~~~~~~l  440 (813)
                      +.|.|   .| .+.|++++..+
T Consensus       252 ~~g~p~~~~~i~v~W~~~g~~i  273 (329)
T 3oq3_B          252 AVSTSLLVDDVLIDWENPSGWI  273 (329)
T ss_dssp             EEETTCCTTCCEEEEECTTSCB
T ss_pred             EEECCCCCCCcEEEEEECCeee
Confidence            98887   66 77888888774

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.96  E-value=8.1e-29  Score=259.16  Aligned_cols=265  Identities=12%  Similarity=0.119  Sum_probs=170.5

Q ss_pred             ccccCeEEEEEeecc-CCCcEEEeeccccccceeccccCCCCCceEE---------eeCCeEEEeCCCCCCCCceEEEEE
Q psy14896        480 SILNDITLSCYAGGY-PNPSYEWFKEDYVQDRLVANLIDPLSDKRFT---------LSGGNLIINDPRQVEDRGSYHCKA  549 (813)
Q Consensus       480 ~~g~~~~l~C~~~g~-p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~i~~~~~~~d~G~Y~C~a  549 (813)
                      .+|+.+.|.|.+.+. |.+.|.|+|++.+........ ......++.         ....+|.|.++ +.+|+|.|+|.|
T Consensus        16 ~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~-~~~~~~r~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a   93 (327)
T 2wng_A           16 AAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQ-KEGHFPRVTTVSESTKRENMDFSISISNI-TPADAGTYYCVK   93 (327)
T ss_dssp             ETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEET-TSSCCTTEEECC---CTTCCBCCEEECSC-CGGGCEEEEEEE
T ss_pred             ecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEc-CCCCcceeeeecccccccCceeEEEEccC-ccccCeEEEEEe
Confidence            789999999999997 889999999986532211110 111122333         23457999997 999999999999


Q ss_pred             EcCcee----EEeecEEEEEeeccccc-ccCCCceeccCCCceEEeCCCCCCCcc--EEEEccCCCCCcccCCCeEEEe-
Q psy14896        550 SNKFGS----IISESVQLAFGFIGEFN-LKRAPEIGNQNWGKAMFCDPPTNYPGV--NYYWARDYFPNFVEEDKRVFVS-  621 (813)
Q Consensus       550 ~n~~g~----~~s~~~~l~v~~~p~~~-~~~~~~~~~~g~~~~l~C~~~~~~p~~--~v~W~k~~~~~~~~~~~~~~~~-  621 (813)
                      .|..+.    ..+..+.|.|..+|... +......+.+|+.++|.|.+ .+.|++  .|+|+|+|.++.... ...... 
T Consensus        94 ~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~~~~~~~g~~~~l~C~~-~g~p~~~~~v~W~k~g~~l~~~~-~~~~~~~  171 (327)
T 2wng_A           94 FRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCES-HGFSPRDITLKWFKNGNELSDFQ-TNVDPVG  171 (327)
T ss_dssp             EESSTTCEEEEECCCEEEEEEBCCCCCEEECCSSCBCTTCEEEEEEEE-EEEBSSCCEEEEEETTEECCCEE-EEEECSS
T ss_pred             ecCCCcceeEeecCcEEEEEEecCCCceeeccccccCCCCEEEEEEEE-eCccCCCcEEEEEECCEEccccc-ccccccc
Confidence            998653    22345678887665432 22233556789999999999 566654  899999997643221 111111 


Q ss_pred             eCc------cEEEEeecccCCeeEEEEEEeeecCccccCceee--EEEccCCCccccccCCCCCCCCCcCCCCCCeEEEE
Q psy14896        622 YDG------ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFP--LKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLE  693 (813)
Q Consensus       622 ~~~------~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~--l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~  693 (813)
                      .++      .|.|.....+|+|.|+|.|.|..|..........  +.+..+|.+....          ..+.+|+.++|.
T Consensus       172 ~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~----------~~~~~G~~v~l~  241 (327)
T 2wng_A          172 ESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQ----------QPVRAENQVNVT  241 (327)
T ss_dssp             CCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEE----------ECCSSTTCCEEE
T ss_pred             CCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEec----------CCcCCCCcEEEE
Confidence            122      4777777778899999999998875321111122  2334444432210          126799999999


Q ss_pred             EEecCCCC-C-eEEEEeCCcccCCCc---eeee-c-----ceEEEECCCCCCCCEEEEEEEEcCCCce-EEEEEEEE
Q psy14896        694 CVAFGYPV-P-SYNWTRRGSPLPRNA---YFEN-F-----NRILTIPNVKVEDQGEYICRASNDRSAL-ESSVTISI  758 (813)
Q Consensus       694 C~~~g~P~-p-~i~W~k~g~~l~~~~---~~~~-~-----~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V  758 (813)
                      |.+.|.|+ + .|+|+|||.++..+.   .... .     .+.|.|..+..+|+|.|+|.|.|..|.. +.++.+.+
T Consensus       242 C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~~s~~~~~~~  318 (327)
T 2wng_A          242 CQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKV  318 (327)
T ss_dssp             EEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCCEEEEEECC-
T ss_pred             EEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCCchhheEEEe
Confidence            99999654 4 899999999885432   1111 1     2469999999999999999999999864 44444433

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.96  E-value=7.1e-29  Score=255.25  Aligned_cols=252  Identities=15%  Similarity=0.121  Sum_probs=185.2

Q ss_pred             ccccCeEEEEEeeccCCCcEEEeeccccccceeccccCCCCCceEEee--CCeEEEeCCCCCCCCceEEEEEEcCceeEE
Q psy14896        480 SILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS--GGNLIINDPRQVEDRGSYHCKASNKFGSII  557 (813)
Q Consensus       480 ~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~  557 (813)
                      .+|+.++|.|.+.+.    |.|++++..             .......  .++|.|.++ +.+|+|.|+|.|.|..|.. 
T Consensus        17 ~~G~~v~L~C~~~~~----v~W~~~~~~-------------~~~~~~~~~~~~L~i~~~-~~~d~G~Y~C~~~n~~~~~-   77 (292)
T 4dkd_C           17 KPGATVTLRCVGNGS----VEWDGPPSP-------------HWTLYSDGSSSILSTNNA-TFQNTGTYRCTEPGDPLGG-   77 (292)
T ss_dssp             CTTCCEEEEEECSSC----CCBCCCCCS-------------SCEECCBTTEEEEEESSC-CGGGCSCEEECCCC----C-
T ss_pred             cCCCcEEEEEcCCCc----eEEccCCCC-------------ceEEeccCceEEEEEccc-ccccCEEEEEEEccCCCCc-
Confidence            789999999999884    999987632             1111111  248999997 9999999999999987765 


Q ss_pred             eecEEEEEeecccc-cccCCCceeccCCCceEEeCCCCCCCc--cEEEEccCCCCCcccCCCeEEEeeCccEEEEeeccc
Q psy14896        558 SESVQLAFGFIGEF-NLKRAPEIGNQNWGKAMFCDPPTNYPG--VNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQI  634 (813)
Q Consensus       558 s~~~~l~v~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  634 (813)
                      +..+.|.|..++.. ........+.+|+.++|.|.+. + |.  +.|+|++++.. .+....++....++.|.|.++..+
T Consensus        78 ~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~-~-~~~~~~v~W~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~  154 (292)
T 4dkd_C           78 SAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLT-D-PVLEAGVSLVRVRGR-PLMRHTNYSFSPWHGFTIHRAKFI  154 (292)
T ss_dssp             CEEECCEECCSSCCEEESCSEEEEETTSCEECCEEES-S-GGGGSSEEEEEGGGC-CCCSSCCEECCSSSCCEETTCCGG
T ss_pred             ceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCC-C-CCcceeEEEEecCCC-ccccCCcccccCCceEEECCCCHH
Confidence            55577888776653 4445556778999999999994 4 44  78999998432 244556677777788999999999


Q ss_pred             CCeeEEEEEEeeecCccccCceeeEEEcc----CCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCC-CeEEEEeC
Q psy14896        635 DAGNYSCNVQSKVSDTGRNGPFFPLKVFP----HSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPV-PSYNWTRR  709 (813)
Q Consensus       635 d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~----~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~-p~i~W~k~  709 (813)
                      |+|.|+|.|.|..|...  +..+.|.|..    +|.+..        ......+.+|+.++|.|.+.|.|+ +.+.|+++
T Consensus       155 d~G~Y~C~a~n~~~~~~--s~~~~l~V~~~~~~~p~i~~--------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~  224 (292)
T 4dkd_C          155 QSQDYQCSALMGGRKVM--SISIRLKVQKVIPGPPALTL--------VPAELVRIRGEAAQIVCSASSVDVNFDVFLQHN  224 (292)
T ss_dssp             GCSEEEEEECSTTSCEE--CCCEEEEEECCCCSSCEEEE--------ESSCBCCCSSSCEEEEEEEEESSSCCEEECCBS
T ss_pred             HCeEEEEEEEeCCCcee--EEEEEEEEeCCCCCCCeEEc--------cCCceeEecCCCEEEEEEecCCCCceEEEEeCC
Confidence            99999999998766432  2347788876    443322        112245679999999999998775 57999999


Q ss_pred             CcccCCCcee--e----ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCCc
Q psy14896        710 GSPLPRNAYF--E----NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPN  763 (813)
Q Consensus       710 g~~l~~~~~~--~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~  763 (813)
                      +..+......  .    ...++|.|.+++.+|+|.|+|.|.|..|..+.++.|.|...+.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~  284 (292)
T 4dkd_C          225 NTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAG  284 (292)
T ss_dssp             SCCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC-----
T ss_pred             CcccccCccceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEeeCCC
Confidence            9877543321  1    1235899999999999999999999999999999999987654

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.96  E-value=6.7e-28  Score=247.53  Aligned_cols=276  Identities=17%  Similarity=0.150  Sum_probs=188.1

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccC
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED  268 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d  268 (813)
                      +|.|...+.++.+.+|     ++++|.|.+.+    .|.|++++....           .......+++|.|.+. +.+|
T Consensus         4 ~p~i~~~~~~~~v~~G-----~~v~L~C~~~~----~v~W~~~~~~~~-----------~~~~~~~~~~L~i~~~-~~~d   62 (289)
T 3ejj_X            4 APVIEPSGPELVVEPG-----ETVTLRCVSNG----SVEWDGPISPYW-----------TLDPESPGSTLTTRNA-TFKN   62 (289)
T ss_dssp             CCEEESCSSEEEECTT-----CCEEEEEECSS----CCEEECSCSSSS-----------EECCCSSCCEEEESSC-CGGG
T ss_pred             CcEecCCCceEEECCC-----CCEEEEEEeCC----cEEEccCCCceE-----------EEeccCCccEEEEeee-cccc
Confidence            5777777888888777     67999999988    599999875321           0011112467888875 8999


Q ss_pred             CeeEEEEeecCceeeEeeeeEEeeeeecc-cccCCCCceeecCCCeEEEecCCCCCCcc-eEEEee-ccccccccCCccE
Q psy14896        269 RGSYHCKASNKFGSIISESVQLAFGFIGE-FNLKRAPEIGNQNWGKAMFCDPPTNYPGV-NYYWAR-DYFPNFVEEDKRV  345 (813)
Q Consensus       269 ~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~-~~~~~~~~~~~~~~~~~l~C~~~~~~p~~-~v~W~k-~~~~~~~~~~~~~  345 (813)
                      +|.|+|.|.|..|.. +..+.|.|..++. +........+.+|+.+.|.|.+. +.|.+ .+.|++ ++..  +....++
T Consensus        63 ~G~Y~C~~~~~~~~~-~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~-~~~~~~~v~W~~~~~~~--~~~~~~~  138 (289)
T 3ejj_X           63 TGTYRCTELEDPMAG-STTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLIT-DPALKDSVSLMREGGRQ--VLRKTVY  138 (289)
T ss_dssp             CEEEEEECCC------CEEEEEEECCSSCSEEESCSEEEEETTSCEEECEEES-CGGGGGSEEEEEGGGEE--CCTTCCE
T ss_pred             CEEEEEEEeccCCcc-eeEEEEEEeCCCcceecccceEEEecCCceEeEEEcc-CCCcceEEEEEecCCee--cCCCccE
Confidence            999999999988875 7788888877665 34445667788899999999975 44554 499986 5554  4456677


Q ss_pred             EEccCccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEEEEee
Q psy14896        346 FVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFG  425 (813)
Q Consensus       346 ~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~~g  425 (813)
                      .+..++.|.|.++..+|+|.|+|.|.|...  ...+..+.|.|.....    .+|..........+.+|+.+.|.|.+.+
T Consensus       139 ~~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~--~~~~~~~~l~V~~~~~----~~p~i~~~~~~~~~~~g~~~~l~C~~~~  212 (289)
T 3ejj_X          139 FFSPWRGFIIRKAKVLDSNTYVCKTMVNGR--ESTSTGIWLKVNRVHP----EPPQIKLEPSKLVRIRGEAAQIVCSATN  212 (289)
T ss_dssp             EEETTTEEEESSCCGGGCEEEEEEEEETTE--EEECCCEEEEEESSCC----CCCEEEEESSSEECCSSSCEEEEEEEEE
T ss_pred             EECCCCCEEEeecccccCEEEEEEEEeCCC--ccccccEEEEEEECCC----CCCeEEecCCceEEEeCCcEEEEEEeCC
Confidence            777888999999999999999999995322  2234457888864211    0011111111234578888999998887


Q ss_pred             -cCCCeeeEeecCCcCCCCceeccccceEEEcccccccceEEeCCCceEecccccccccCeEEEEEeeccCCCcEEEeec
Q psy14896        426 -YPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKE  504 (813)
Q Consensus       426 -~p~p~i~W~~~~~~l~~~~~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~  504 (813)
                       .|.+.+.|++++..+.......                                                      +  
T Consensus       213 ~~p~~~i~W~~~~~~~~~~~~~~------------------------------------------------------~--  236 (289)
T 3ejj_X          213 AEVGFNVILKRGDTKLEIPLNSD------------------------------------------------------F--  236 (289)
T ss_dssp             SSSCCEEEEEETTEECCCCEEEE------------------------------------------------------E--
T ss_pred             CCCceEEEEEECCEEeeccCCcc------------------------------------------------------c--
Confidence             6888888888877664321100                                                      0  


Q ss_pred             cccccceeccccCCCCCceEEeeCCeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEEeecc
Q psy14896        505 DYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIG  569 (813)
Q Consensus       505 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~p  569 (813)
                                      ........++|.|.++ ..+|+|.|+|.|.|..|...+. +.|.+...+
T Consensus       237 ----------------~~~~~~~~~~L~i~~v-~~~d~G~Y~C~a~N~~G~~~~s-~~L~~~~~~  283 (289)
T 3ejj_X          237 ----------------QDNYYKKVRALSLNAV-DFQDAGIYSCVASNDVGTRTAT-MNFQVVESH  283 (289)
T ss_dssp             ----------------CSSSEEEEEEEEESSC-CSSSCEEEEEEEECSSCEEEEE-EEEECC---
T ss_pred             ----------------ccceEEeeEEEEEEee-cccCCEEEEEEEEcCCCCcccc-EEEEEEecc
Confidence                            0011123468999997 9999999999999999998544 677665443

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.96  E-value=7.4e-28  Score=247.16  Aligned_cols=218  Identities=15%  Similarity=0.204  Sum_probs=143.8

Q ss_pred             CeEEEeCCCCCCCCceEEEEEEcCceeEEeec--EEEEEeecccccccCCC----ceeccCCCceEEeCCCCCCCccEEE
Q psy14896        529 GNLIINDPRQVEDRGSYHCKASNKFGSIISES--VQLAFGFIGEFNLKRAP----EIGNQNWGKAMFCDPPTNYPGVNYY  602 (813)
Q Consensus       529 ~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~--~~l~v~~~p~~~~~~~~----~~~~~g~~~~l~C~~~~~~p~~~v~  602 (813)
                      ++|.|.++ ..+|+|.|+|.|.|..|......  +.|.|..+........+    ..+.+|+.++|.|.+.  .|.+.++
T Consensus        51 ~~L~i~~~-~~~D~G~Y~C~a~n~~g~~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~--~p~~~v~  127 (289)
T 3mjg_X           51 SVLTLTNL-TGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT--DPQLVVT  127 (289)
T ss_dssp             EEEEECSC-CGGGCEEEEEECCC------CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS--CTTSCEE
T ss_pred             EEEEEccC-ChhhCEEEEEEEcccCCCCcCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC--CCCceEE
Confidence            57899997 99999999999999887643333  34444333322222111    4478899999999994  5677788


Q ss_pred             EccCCCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEEEEeeecCccccCceeeEEEcc--CCCccccccCCCCCCCC
Q psy14896        603 WARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFP--HSNFQQLKFPNNFPKTF  680 (813)
Q Consensus       603 W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~--~p~~~~~~~p~~~~~~~  680 (813)
                      |++++....+.  ..+  .....+.    ...|+|.|+|.|.|..+.....  .+.|.|..  +|.+..        ...
T Consensus       128 w~~~~~~~~~~--~~~--~~~~~~~----~~~d~G~Y~C~a~n~~~~~~s~--~~~l~v~~~~~p~i~~--------~~~  189 (289)
T 3mjg_X          128 LHEKKGDVALP--VPY--DHQRGFS----GIFEDRSYICKTTIGDREVDSD--AYYVYRLQVSSINVSV--------NAV  189 (289)
T ss_dssp             EEESSCCSCCC--CCE--ETTTEEE----ECCCSSEEEEEEEETTEEEECC--CEEEEECCCCCCCCEE--------EES
T ss_pred             EEeCCCCCccc--eee--cCCcCee----eeccCcEEEEEEEeCCceeeee--eEEEEecCCCCCCcEE--------eCC
Confidence            87764221121  111  1111121    3679999999999876643332  34566665  232211        112


Q ss_pred             CcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCc----ee-----eecceEEEECCCCCCCCEEEEEEEEcCCCceE
Q psy14896        681 PEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA----YF-----ENFNRILTIPNVKVEDQGEYICRASNDRSALE  751 (813)
Q Consensus       681 ~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~----~~-----~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~  751 (813)
                      ...+.+|++++|.|.+.|.|.|.|+|++++..+....    ..     ....++|.|.+++.+|+|.|+|.|.|.+|..+
T Consensus       190 ~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~  269 (289)
T 3mjg_X          190 QTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQ  269 (289)
T ss_dssp             CSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEE
T ss_pred             cceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCce
Confidence            2457899999999999999999999998877543321    11     12347899999999999999999999999999


Q ss_pred             EEEEEEEEcCCccccc
Q psy14896        752 SSVTISIQAEPNFTIP  767 (813)
Q Consensus       752 ~~~~l~V~~~P~~~~~  767 (813)
                      .++.|.|..+|.+...
T Consensus       270 ~~~~l~v~~~~~~~~~  285 (289)
T 3mjg_X          270 DEKAINITVVESGHHH  285 (289)
T ss_dssp             EEEEEEEEEEC-----
T ss_pred             eEEEEEEEEEecCccc
Confidence            9999999998876543

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.96  E-value=2.3e-28  Score=254.24  Aligned_cols=260  Identities=15%  Similarity=0.158  Sum_probs=172.6

Q ss_pred             ccccCeEEEEEeeccCCCcEEEeeccccccceeccccCCCCCceEEeeCCeEEEeCCCCCCCCceEEEEEEcCce----e
Q psy14896        480 SILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFG----S  555 (813)
Q Consensus       480 ~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g----~  555 (813)
                      .+|+.++|.|.+.+. .+.+.|+|+|..+..          .......++.|.|.++ +.+|+|.|+|.|.|..+    .
T Consensus        36 ~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~----------~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~~~~~~~~~~  103 (316)
T 3vh8_G           36 PRGGHVTLRCHYRHR-FNNFMLYKEDRIHIP----------IFHGRIFQESFNMSPV-TTAHAGNYTCRGSHPHSPTGWS  103 (316)
T ss_dssp             ETTSCEEEEEEBTTB-CCSEEEEESSCSSSC----------HHHHCCBSSCEEECSC-CGGGCEEEEEEEBCSSSSSSBC
T ss_pred             CCCCCEEEEEEccCC-CceEEEEeCCCccce----------eecCCcceEEEEECCC-CcccCeEEEEEEEcCCCCccee
Confidence            689999999999988 689999999964211          0111224678999997 99999999999986422    2


Q ss_pred             EEeecEEEEEeec---ccccccCCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEE--eeCccEEEEe
Q psy14896        556 IISESVQLAFGFI---GEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFV--SYDGALYFSA  630 (813)
Q Consensus       556 ~~s~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~--~~~~~L~i~~  630 (813)
                      ..+..+.|.|...   |.+...... .+.+|+.++|.|.+ . .+.+.+.|+|++..+..........  ..++.|.|.+
T Consensus       104 ~~s~~~~l~V~~~~~~p~~~~~~~~-~v~~G~~v~L~C~~-~-~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~  180 (316)
T 3vh8_G          104 APSNPVVIMVTGNHRKPSLLAHPGP-LVKSGERVILQCWS-D-IMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGP  180 (316)
T ss_dssp             CCCCCEEEEEECSSCCCEEEEESCS-EEETTCCEEEEEEE-S-SCCSEEEEEETTCCSCCEEEECEEETTEEEEEEEECS
T ss_pred             cCCCcEEEEEecCCCCCeEEecCCC-ccCCCCeEEEEEcC-C-CCCcEEEEEECCCccccceeeeeecCCCceEEEEECC
Confidence            2345567777543   233333333 37889999999998 3 4567899999997642211111111  1345799999


Q ss_pred             ecccCCeeEEEEEEeeecCcc--ccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEe
Q psy14896        631 LEQIDAGNYSCNVQSKVSDTG--RNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTR  708 (813)
Q Consensus       631 ~~~~d~G~Y~C~a~n~~g~~~--~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k  708 (813)
                      ++.+|+|.|+|.|.|..|...  ..+..+.|.|...+....+...+      ...+.+|++++|.|.+.+ |.+.+.|+|
T Consensus       181 v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~------~~~v~~G~~v~L~C~~~~-~~~~~~W~k  253 (316)
T 3vh8_G          181 MMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQP------GPKVQAGESVTLSCSSRS-SYDMYHLSR  253 (316)
T ss_dssp             CCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEES------CSCCCTTSCCEEEEEESS-CCSEEEEEE
T ss_pred             CChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCC------CCeecCCCcEEEEEECCC-CCcEEEEEE
Confidence            999999999999999987522  12334667776543322222211      135789999999999974 778999999


Q ss_pred             CCcccCCCcee-----eecceEEEECCCCCCCCEEEEEEEEcCCC-----ceEEEEEEEEEcCCc
Q psy14896        709 RGSPLPRNAYF-----ENFNRILTIPNVKVEDQGEYICRASNDRS-----ALESSVTISIQAEPN  763 (813)
Q Consensus       709 ~g~~l~~~~~~-----~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G-----~~~~~~~l~V~~~P~  763 (813)
                      +|..+......     ......|.|.+++  |+|.|+|.|.|..+     ..+..+.|.|.++|.
T Consensus       254 ~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~p~  316 (316)
T 3vh8_G          254 EGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWSDPSDPLLVSVTGNPS  316 (316)
T ss_dssp             TTSSCCEEEECEECTTSCEEEEEECC-------CEEEEEEEBTTBTTEECCCCCCEEC-------
T ss_pred             CCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCCchhccCCCCcEEEEEeCCCC
Confidence            99987643211     1123689999999  99999999999866     356788888888773

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.96  E-value=5.7e-27  Score=259.69  Aligned_cols=370  Identities=15%  Similarity=0.176  Sum_probs=217.3

Q ss_pred             CCCceeecCCCeEEEecCCCCCC-c--ceEEEeec--ccccc-c-------------cCCccEEEcc-----CccEEEee
Q psy14896        302 RAPEIGNQNWGKAMFCDPPTNYP-G--VNYYWARD--YFPNF-V-------------EEDKRVFVSY-----DGALYFSA  357 (813)
Q Consensus       302 ~~~~~~~~~~~~~l~C~~~~~~p-~--~~v~W~k~--~~~~~-~-------------~~~~~~~~~~-----~~~L~i~~  357 (813)
                      +....+.+|+.++|.|.+....+ .  ..+.|+|.  |+... +             ....|+.+..     +.+|.|.+
T Consensus         7 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   86 (512)
T 1zvo_C            7 SGPGLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNLRS   86 (512)
T ss_pred             CCCEEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEECc
Confidence            34567889999999999743222 2  68999986  33211 0             0134665543     23799999


Q ss_pred             eeecCCeeeEEEEeeecc----------ccCCCCCceeeEEccCCcccccccCCCCCCCC-CcCCCCCCcEEEEEEEeec
Q psy14896        358 LEQIDAGNYSCNVQSKVS----------DTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTF-PEAPKAGDKVRLECVAFGY  426 (813)
Q Consensus       358 v~~~D~G~Y~C~a~n~~g----------~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~-~~~v~~g~~~~l~C~~~g~  426 (813)
                      ++.+|+|.|.|.+.+..+          .....+..+.|.|...+.    ..|.+.+... .....+|+.+.|.|.+.|.
T Consensus        87 v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~----~~P~i~~~~~~~~~~~~~~~v~L~C~~~g~  162 (512)
T 1zvo_C           87 MSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPT----KAPDVFPIISGCRHPKDNSPVVLACLITGY  162 (512)
T ss_pred             CCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCC----cCCeEEeccCCcccccCCCeEEEEEEEEee
Confidence            999999999999987642          111123346777764321    1111110000 0102346788899988876


Q ss_pred             -CCC-eeeEeecCCcCCCCceeccccceEEEcccccccceEEeCCCceEecccccccccCeEEEEEeeccCCCcEEEeec
Q psy14896        427 -PVP-SYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKE  504 (813)
Q Consensus       427 -p~p-~i~W~~~~~~l~~~~~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~  504 (813)
                       |.| .|+|++++.......                                                 .+.        
T Consensus       163 ~P~p~~v~W~~~~~~~~~~~-------------------------------------------------~~~--------  185 (512)
T 1zvo_C          163 HPTSVTVTWYMGTQSQPQRT-------------------------------------------------FPE--------  185 (512)
T ss_pred             ecCceEEEEEcCcccCceEe-------------------------------------------------cCc--------
Confidence             665 788887543210000                                                 000        


Q ss_pred             cccccceeccccCCCCCceEEeeCCeEEEeCCCCCCCCceEEEEEEcCceeEEeec----------EEEEEeecc-----
Q psy14896        505 DYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISES----------VQLAFGFIG-----  569 (813)
Q Consensus       505 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~----------~~l~v~~~p-----  569 (813)
                                  .......+. ..+.|.|... ..+ .|.|+|.|.|..+......          ..+.+..+|     
T Consensus       186 ------------~~~~~g~~~-~~s~L~i~~~-~~~-~g~ytC~v~n~~~~~~~~~~~~~~~~~~~~~v~l~~pp~~~~~  250 (512)
T 1zvo_C          186 ------------IQRRDSYYM-TSSQLSTPLQ-QWR-QGEYKCVVQHTASKSKKEIFRWPESPKAQASSVPTAQPQAEGS  250 (512)
T ss_pred             ------------eecCCCCEE-EEEEEEEcHH-HcC-CceEEEEEEeCCCCceEEEecCCCCCCcCCEEEEeCCCchhcc
Confidence                        000011111 1245778764 556 8999999999887643221          122232222     


Q ss_pred             -----------------------------------------------cccc-cCCCceeccCCCceEEeCCCCCCCc-cE
Q psy14896        570 -----------------------------------------------EFNL-KRAPEIGNQNWGKAMFCDPPTNYPG-VN  600 (813)
Q Consensus       570 -----------------------------------------------~~~~-~~~~~~~~~g~~~~l~C~~~~~~p~-~~  600 (813)
                                                                     .+.+ .+....+..|+.++|.|.+...+|+ ..
T Consensus       251 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~g~~~~L~C~v~g~~P~~~~  330 (512)
T 1zvo_C          251 LAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATFTCFVVGSDLKDAH  330 (512)
T ss_pred             ccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChHHhccCCceEEEEEEeceECCCeE
Confidence                                                           1111 1122334579999999999433453 58


Q ss_pred             EEEccCCCCCccc-CCCeEEEeeCc------cEEEEeecccCCeeEEEEEEeeecCccccCceeeEEE----ccCCCccc
Q psy14896        601 YYWARDYFPNFVE-EDKRVFVSYDG------ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKV----FPHSNFQQ  669 (813)
Q Consensus       601 v~W~k~~~~~~~~-~~~~~~~~~~~------~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v----~~~p~~~~  669 (813)
                      |+|+|+|.++... .........+|      +|.|..+..+|.|.|+|.|.|..+... . ..+....    ..+|.+..
T Consensus       331 i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~~-~-~~~~~~~~~~~~~~p~v~~  408 (512)
T 1zvo_C          331 LTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPPQ-R-LMALREPAAQAPVKLSLNL  408 (512)
T ss_pred             EEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCCC-c-eeEEeecCCCCCCCCEEEE
Confidence            9999999763211 11112222344      489999999999999999999987543 1 1121111    12333221


Q ss_pred             cccCCCCCCCCCcCCCCCCeEE-EEEEecCCCCC--eEEEEeCCcccCCCcee------eec------ceEEEECCCCCC
Q psy14896        670 LKFPNNFPKTFPEAPKAGDKVR-LECVAFGYPVP--SYNWTRRGSPLPRNAYF------ENF------NRILTIPNVKVE  734 (813)
Q Consensus       670 ~~~p~~~~~~~~~~~~~G~~v~-l~C~~~g~P~p--~i~W~k~g~~l~~~~~~------~~~------~~~L~i~~v~~~  734 (813)
                      .  +.       ..  .|+.+. |.|.+.|++++  .|+|+|||.++..+...      ..+      .+.|.|.....+
T Consensus       409 ~--~~-------~~--~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~dg~~~~~~s~L~v~~~~~~  477 (512)
T 1zvo_C          409 L--AS-------SD--PPEAASWLLCEVSGFSPPNILLMWLEDQREVNTSGFAPARPPPQPGSTTFWAWSVLRVPAPPSP  477 (512)
T ss_pred             E--cc-------Cc--CCCCceEEEEEEeeeCCCCcEEEEEECCeECcCccccccceeECCCCCEEEEEEEEEECchhcC
Confidence            1  11       11  799999 99999996544  68999999998654311      111      135888888888


Q ss_pred             CCEEEEEEEEcCCCc--eEEEEEEEEEc
Q psy14896        735 DQGEYICRASNDRSA--LESSVTISIQA  760 (813)
Q Consensus       735 d~G~Y~C~a~N~~G~--~~~~~~l~V~~  760 (813)
                      |.|.|+|+|.|....  ......|.|..
T Consensus       478 ~~g~YtC~v~h~~l~~~~~~~~~~~v~~  505 (512)
T 1zvo_C          478 QPATYTCVVSHEDSRTLLNASRSLEVSY  505 (512)
T ss_pred             CCCeEEEEEEecCCCCceEEEEEEEecc
Confidence            899999999998654  34455555544

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.95  E-value=1.8e-27  Score=249.60  Aligned_cols=279  Identities=16%  Similarity=0.188  Sum_probs=185.2

Q ss_pred             CceeeCCCceeecCCCccccccEEEEeeeccC----CCCeEEEeeccccccccc-------ccccccCCCccEEee----
Q psy14896        190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGY----PNPSYEWFKEDYVQDRLV-------ANLIDPLSDKRFTLS----  254 (813)
Q Consensus       190 P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~----P~p~v~W~k~g~~l~~~~-------~~~~~~~~~~~~~~~----  254 (813)
                      +.+...|.++.+.+|     ++++|.|.+.+.    |.+.|.|+|++.......       ...+......++.+.    
T Consensus        15 ~~~~~~~~~~~v~~G-----~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~   89 (331)
T 3u83_A           15 SQVVQVNDSMYGFIG-----TDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSF   89 (331)
T ss_dssp             ------CEEEEEETT-----CCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSS
T ss_pred             cceEEcCCcEEEEec-----CCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCC
Confidence            445566777888777     779999999886    455899999763211000       001112333455542    


Q ss_pred             -CCeEEEcCCccccCCeeEEEE-eecCceeeEeeeeEEeeeeecccccC--CCCceeecC---CCeEEEecCCCCCCcce
Q psy14896        255 -GGNLIINDPRQVEDRGSYHCK-ASNKFGSIISESVQLAFGFIGEFNLK--RAPEIGNQN---WGKAMFCDPPTNYPGVN  327 (813)
Q Consensus       255 -~~~l~i~~~~~~~d~G~Y~C~-a~n~~g~~~s~~~~l~v~~~~~~~~~--~~~~~~~~~---~~~~l~C~~~~~~p~~~  327 (813)
                       +++|.|.+. +.+|+|.|+|. +.|..|.. +..+.|.|..+|.+.+.  .....+.+|   +.++|.|.+..+.|.+.
T Consensus        90 ~~~~L~I~~v-~~~D~G~Y~C~~~~~~~~~~-~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~  167 (331)
T 3u83_A           90 TDGTIRLSRL-ELEDEGVYICEFATFPTGNR-ESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSV  167 (331)
T ss_dssp             SBCCEEECSC-CGGGCEEEEEEEEEETTEEE-EEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCE
T ss_pred             CCceEEEccc-CcccCcEEEEEEEecCCCcc-EEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCce
Confidence             567888885 89999999998 55666655 77788988887776443  334445555   45899998668889999


Q ss_pred             EEEeeccccccccCCccEEEccCc------cEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCcccccccCC
Q psy14896        328 YYWARDYFPNFVEEDKRVFVSYDG------ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPN  401 (813)
Q Consensus       328 v~W~k~~~~~~~~~~~~~~~~~~~------~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~  401 (813)
                      ++|+|++.....   .......++      .|.|.++..+|+|.|+|.|.|..|...   ..+.|.|..+|.+... .+ 
T Consensus       168 i~W~~~~~~~~~---~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~---~~~~l~V~~~P~~~~~-~~-  239 (331)
T 3u83_A          168 VSWETRLKGEAE---YQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFK---ESLTLNVQYEPEVTIE-GF-  239 (331)
T ss_dssp             EEEEESSCCEEE---EEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEE---EEEECCEEEEEEEEEE-CC-
T ss_pred             EEEEcCCCCccc---cceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcce---eeEEEEEecCCeEEEe-cC-
Confidence            999996443211   111122233      477777799999999999999876533   3477777666543211 11 


Q ss_pred             CCCCCCCcCCCCCCcEEEEEEEeecCCCe-eeEeecCCcCCCCceeccccceEEEcccccccceEEeCCCceEecccccc
Q psy14896        402 NFPKTFPEAPKAGDKVRLECVAFGYPVPS-YNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRS  480 (813)
Q Consensus       402 ~~~~~~~~~v~~g~~~~l~C~~~g~p~p~-i~W~~~~~~l~~~~~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~  480 (813)
                           ....+.+|+.+.|.|.+.|+|.|. +.|++++..+...                                     
T Consensus       240 -----~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~-------------------------------------  277 (331)
T 3u83_A          240 -----DGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKG-------------------------------------  277 (331)
T ss_dssp             -----CSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTT-------------------------------------
T ss_pred             -----CCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCccccc-------------------------------------
Confidence                 123577888888888888888876 8887777665321                                     


Q ss_pred             cccCeEEEEEeeccCCCcEEEeeccccccceeccccCCCCCceEEeeCCeEEEe-CCCCCCCCceEEEEEEcCceeEEee
Q psy14896        481 ILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIIN-DPRQVEDRGSYHCKASNKFGSIISE  559 (813)
Q Consensus       481 ~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~-~~~~~~d~G~Y~C~a~n~~g~~~s~  559 (813)
                                                                 ....+++|.|. ++ ..+|+|.|+|.|.|..|.. +.
T Consensus       278 -------------------------------------------~~~~~~~L~i~~~v-~~~d~G~Y~C~a~N~~G~~-~~  312 (331)
T 3u83_A          278 -------------------------------------------VEAQNRTLFFKGPI-NYSLAGTYICEATNPIGTR-SG  312 (331)
T ss_dssp             -------------------------------------------EEEETTEEEECSCC-CGGGCEEEEEEEEETTEEE-EE
T ss_pred             -------------------------------------------ceecCcEEEEeCCC-ccccCeEEEEEEEeccccc-eE
Confidence                                                       22355689998 76 8999999999999999987 55


Q ss_pred             cEEEEEeeccc
Q psy14896        560 SVQLAFGFIGE  570 (813)
Q Consensus       560 ~~~l~v~~~p~  570 (813)
                      .+.|.|...+.
T Consensus       313 ~~~l~V~~~~~  323 (331)
T 3u83_A          313 QVEVNITEAAA  323 (331)
T ss_dssp             EEEECCBC---
T ss_pred             EEEEEEeccch
Confidence            57887765543

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.95  E-value=1.2e-26  Score=256.97  Aligned_cols=399  Identities=14%  Similarity=0.122  Sum_probs=212.0

Q ss_pred             CCCceeecCCCccccccEEEEeeeccCCC----CeEEEeec--ccccccccc------cccccCCCccEEee------CC
Q psy14896        195 QPTDVVFDLSKRSILNDITLSCYAGGYPN----PSYEWFKE--DYVQDRLVA------NLIDPLSDKRFTLS------GG  256 (813)
Q Consensus       195 ~p~~~~v~~g~~~~g~~v~l~C~~~g~P~----p~v~W~k~--g~~l~~~~~------~~~~~~~~~~~~~~------~~  256 (813)
                      +|..+.+.+|     ++++|.|.+.+.+.    +.|.|||+  |..+.....      .........|+.+.      +.
T Consensus         6 qp~~v~v~~G-----~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   80 (512)
T 1zvo_C            6 ESGPGLVKPS-----ETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQF   80 (512)
T ss_pred             CCCCEEEcCC-----CCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEE
Confidence            3556666666     77999999987543    68999997  332211000      00111123455543      24


Q ss_pred             eEEEcCCccccCCeeEEEEeecCce----------e--eEeeeeEEeeeee----cccccC-CCCceeecCCCeEEEecC
Q psy14896        257 NLIINDPRQVEDRGSYHCKASNKFG----------S--IISESVQLAFGFI----GEFNLK-RAPEIGNQNWGKAMFCDP  319 (813)
Q Consensus       257 ~l~i~~~~~~~d~G~Y~C~a~n~~g----------~--~~s~~~~l~v~~~----~~~~~~-~~~~~~~~~~~~~l~C~~  319 (813)
                      +|.|.+. +.+|+|.|.|.+.+..+          .  .....+.|.|...    |.+... ........++.++|.|.+
T Consensus        81 sL~I~~v-~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L~C~~  159 (512)
T 1zvo_C           81 SLNLRSM-SAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLI  159 (512)
T ss_pred             EEEECcC-CHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcccccCCCeEEEEEEE
Confidence            6888885 89999999999998642          1  1134456776532    222211 111102235788999998


Q ss_pred             CCCCCcc-eEEEeeccccccccCCccEEEccCc------cEEEeeeeecCCeeeEEEEeeeccccCCCC--------Cce
Q psy14896        320 PTNYPGV-NYYWARDYFPNFVEEDKRVFVSYDG------ALYFSALEQIDAGNYSCNVQSKVSDTGRNG--------PFF  384 (813)
Q Consensus       320 ~~~~p~~-~v~W~k~~~~~~~~~~~~~~~~~~~------~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s--------~~~  384 (813)
                      ....|.+ +|+|++++........... ...++      .|.|.....+ .|.|+|.|.|..+......        ...
T Consensus       160 ~g~~P~p~~v~W~~~~~~~~~~~~~~~-~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~~~~~~~~~~~  237 (512)
T 1zvo_C          160 TGYHPTSVTVTWYMGTQSQPQRTFPEI-QRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIFRWPESPKAQA  237 (512)
T ss_pred             EeeecCceEEEEEcCcccCceEecCce-ecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEecCCCCCCcCC
Confidence            6666775 9999997654211111111 12223      4788877777 9999999999887533221        011


Q ss_pred             eeEEccCCcccccccCCCCCCCCCcCCCCCCc-------------------EEEEEEEeecCCCeeeEeecC-CcCCCCc
Q psy14896        385 PLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDK-------------------VRLECVAFGYPVPSYNWTRRG-SPLPRNA  444 (813)
Q Consensus       385 ~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~-------------------~~l~C~~~g~p~p~i~W~~~~-~~l~~~~  444 (813)
                      .+.+..+|........ . .. .+.....|.-                   ..-.|... .-.|.+.-+... ..+    
T Consensus       238 ~v~l~~pp~~~~~~~~-~-~~-~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~-~~~p~v~~~~p~~~~~----  309 (512)
T 1zvo_C          238 SSVPTAQPQAEGSLAK-A-TT-APATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSH-TQPLGVYLLTPAVQDL----  309 (512)
T ss_pred             EEEEeCCCchhccccc-c-cc-CchhhccCcccccceeccCCcccccccCcccccCCCC-CCCCEEEEECCChHHh----
Confidence            2333323220000000 0 00 0000000000                   00012000 012233222211 111    


Q ss_pred             eeccccceEEEcccccccceEEeCCCceEecccccccccCeEEEEEeeccCC--CcEEEeeccccccce-eccccCCCCC
Q psy14896        445 YFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPN--PSYEWFKEDYVQDRL-VANLIDPLSD  521 (813)
Q Consensus       445 ~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~--~~v~W~k~~~~~~~~-~~~~~~~~~~  521 (813)
                                                         .+|+.++|.|.+.|+++  ..|+|+|+|..+... .........+
T Consensus       310 -----------------------------------~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~  354 (512)
T 1zvo_C          310 -----------------------------------WLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSN  354 (512)
T ss_pred             -----------------------------------ccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCC
Confidence                                               45778888888877533  378888888654310 0000111111


Q ss_pred             ceEEeeCCeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEE----eecccccccCCCceeccCCCce-EEeCCCCCC
Q psy14896        522 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAF----GFIGEFNLKRAPEIGNQNWGKA-MFCDPPTNY  596 (813)
Q Consensus       522 ~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v----~~~p~~~~~~~~~~~~~g~~~~-l~C~~~~~~  596 (813)
                      ..+. ..+.|.|... ..+|.|.|+|.|.|..+......+....    ..+|.+.......   .|+.++ |.|.+...+
T Consensus       355 gt~~-~~s~L~i~~~-~~~d~g~y~C~a~n~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~---~~~~~~~L~C~~~g~~  429 (512)
T 1zvo_C          355 GSQS-QHSRLTLPRS-LWNAGTSVTCTLNHPSLPPQRLMALREPAAQAPVKLSLNLLASSD---PPEAASWLLCEVSGFS  429 (512)
T ss_pred             CeEE-EEEEEEEchH-HhcCCCeEEEEEEeCCCCCCceeEEeecCCCCCCCCEEEEEccCc---CCCCceEEEEEEeeeC
Confidence            2221 2346888875 8889999999999987654211122111    2334433332222   688899 999994335


Q ss_pred             Cc-cEEEEccCCCCCcccCC--CeEEEeeCcc-------EEEEeecccCCeeEEEEEEeeecC
Q psy14896        597 PG-VNYYWARDYFPNFVEED--KRVFVSYDGA-------LYFSALEQIDAGNYSCNVQSKVSD  649 (813)
Q Consensus       597 p~-~~v~W~k~~~~~~~~~~--~~~~~~~~~~-------L~i~~~~~~d~G~Y~C~a~n~~g~  649 (813)
                      |+ ..|+|+|||.++.....  .......+|+       |.|.....+|.|.|+|.|.|....
T Consensus       430 P~~i~v~W~k~g~~~~~~~~~~~~~~~~~dg~~~~~~s~L~v~~~~~~~~g~YtC~v~h~~l~  492 (512)
T 1zvo_C          430 PPNILLMWLEDQREVNTSGFAPARPPPQPGSTTFWAWSVLRVPAPPSPQPATYTCVVSHEDSR  492 (512)
T ss_pred             CCCcEEEEEECCeECcCccccccceeECCCCCEEEEEEEEEECchhcCCCCeEEEEEEecCCC
Confidence            54 47999999986432211  1222344553       555555666799999999998754

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.95  E-value=3.3e-28  Score=254.49  Aligned_cols=270  Identities=15%  Similarity=0.180  Sum_probs=175.2

Q ss_pred             CCCceeecCCCeEEEecCCCCCCcceEEEeeccccccc---c----CCccEEE--------ccCccEEEeeeeecCCeee
Q psy14896        302 RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFV---E----EDKRVFV--------SYDGALYFSALEQIDAGNY  366 (813)
Q Consensus       302 ~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~---~----~~~~~~~--------~~~~~L~i~~v~~~D~G~Y  366 (813)
                      +....+.+|+.++|.|.+....|.+.|+|+|++.+...   .    ...|+..        ..+++|.|.+++.+|+|.|
T Consensus        10 p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   89 (327)
T 2wng_A           10 DKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADAGTY   89 (327)
T ss_dssp             CSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGGGCEEE
T ss_pred             CCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccccCeEE
Confidence            45567889999999999754448899999999875311   0    1224443        2345799999999999999


Q ss_pred             EEEEeeeccccC--CCCCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEEEEeecCCC--eeeEeecCCcCCC
Q psy14896        367 SCNVQSKVSDTG--RNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVP--SYNWTRRGSPLPR  442 (813)
Q Consensus       367 ~C~a~n~~g~~~--~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p--~i~W~~~~~~l~~  442 (813)
                      +|.|.|..+...  ..+..+.|.|...+....+..|       ...+.+|+.+.|.|.+.|.|+|  .+.|++++.++..
T Consensus        90 ~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~-------~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~  162 (327)
T 2wng_A           90 YCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGP-------AARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSD  162 (327)
T ss_dssp             EEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECC-------SSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCC
T ss_pred             EEEeecCCCcceeEeecCcEEEEEEecCCCceeecc-------ccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEccc
Confidence            999999765311  1234478888776554333322       2468899999999999988776  8999999887754


Q ss_pred             CceeccccceEEEcccccccceEEeCCCceEecccccccccCeEEEEEeeccCCCcEEEeeccccccceeccccCCCCCc
Q psy14896        443 NAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK  522 (813)
Q Consensus       443 ~~~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~  522 (813)
                      .....                                                                    .......
T Consensus       163 ~~~~~--------------------------------------------------------------------~~~~~~~  174 (327)
T 2wng_A          163 FQTNV--------------------------------------------------------------------DPVGESV  174 (327)
T ss_dssp             EEEEE--------------------------------------------------------------------ECSSCCS
T ss_pred             ccccc--------------------------------------------------------------------ccccCCC
Confidence            31100                                                                    0000111


Q ss_pred             eEEeeCCeEEEeCCCCCCCCceEEEEEEcCceeE--EeecEEE--EEeecccccccCCCceeccCCCceEEeCCCCC-CC
Q psy14896        523 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI--ISESVQL--AFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTN-YP  597 (813)
Q Consensus       523 ~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~--~s~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~p  597 (813)
                      .+. ..+.|.|... ..+|.|.|+|.|.|..+..  ....+.+  .+..+|.+.....+  +.+|+.++|.|.+ .| .|
T Consensus       175 ~~~-~~s~L~i~~~-~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~--~~~G~~v~l~C~~-~g~~p  249 (327)
T 2wng_A          175 SYS-IHSTAKVVLT-REDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQP--VRAENQVNVTCQV-RKFYP  249 (327)
T ss_dssp             CEE-EEEEEEEECC-TTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEEC--CSSTTCCEEEEEE-EEEBS
T ss_pred             ceE-EEEEEEEech-hcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecCC--cCCCCcEEEEEEE-ccccC
Confidence            111 2235777664 6677899999999987652  1222233  34556655544333  6789999999999 56 44


Q ss_pred             cc-EEEEccCCCCCcccCCCeEEEeeCcc------EEEEeecccCCeeEEEEEEeeecCcc
Q psy14896        598 GV-NYYWARDYFPNFVEEDKRVFVSYDGA------LYFSALEQIDAGNYSCNVQSKVSDTG  651 (813)
Q Consensus       598 ~~-~v~W~k~~~~~~~~~~~~~~~~~~~~------L~i~~~~~~d~G~Y~C~a~n~~g~~~  651 (813)
                      ++ .|+|+|||.++......+.....+|+      |.|.++..+|+|.|+|.|.|.+|...
T Consensus       250 ~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~~  310 (327)
T 2wng_A          250 QRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAV  310 (327)
T ss_dssp             SCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCCE
T ss_pred             CCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCCc
Confidence            44 89999999864333223344444553      78888899999999999999998643

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.95  E-value=1.2e-27  Score=241.95  Aligned_cols=199  Identities=15%  Similarity=0.173  Sum_probs=141.7

Q ss_pred             cccEEEEeeecc-CCCC--eEEEeecccccccccccccccCCCccEEeeCCeEEEcCC--ccccCCee--EEEEeecCce
Q psy14896        209 LNDITLSCYAGG-YPNP--SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDP--RQVEDRGS--YHCKASNKFG  281 (813)
Q Consensus       209 g~~v~l~C~~~g-~P~p--~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~--~~~~d~G~--Y~C~a~n~~g  281 (813)
                      |++++|.|.+.| .|.|  .|.|||+|..+..            .....++.+.+...  ++.+|+|.  |+|.|.|..|
T Consensus        18 G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~------------~~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~   85 (265)
T 2oz4_A           18 DTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP------------TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQ   85 (265)
T ss_dssp             TEEEEEEEEEESCSCGGGCEEEEEETTEECCC------------EEEECSSEEEEEEEEEECGGGCEEEEEEEEEEETTE
T ss_pred             CCCEEEEEEccCCCCCcceEEEEEeCCEECCc------------eEeeCCCeEEEEeecccccccCCcceEEEEEecCCC
Confidence            477999999998 8877  9999999986521            33344555555432  25688885  9999999998


Q ss_pred             eeEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCccEEEccCccEEEeeeeec
Q psy14896        282 SIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQI  361 (813)
Q Consensus       282 ~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~v~~~  361 (813)
                      .. +..+.|.|...|++.+......+.+|+.++|.|.+.   |.+.++|  +|.++...       ...+.|.|..+..+
T Consensus        86 ~~-~~~~~l~V~~~p~p~~~~~~~~v~~G~~v~l~C~~~---p~~~i~W--~g~~~~~~-------~~~~~l~i~~~~~~  152 (265)
T 2oz4_A           86 SQ-ETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAH---PRAKVTL--NGVPAQPL-------GPRAQLLLKATPED  152 (265)
T ss_dssp             EE-EEEEEEEEECCCCCEEEESCSEEETTCEEEEEEECC---TTSEEEE--SSCSSSCC-------SSEECCEEECCGGG
T ss_pred             Cc-EEEEEEEEeCCCCceeecCCceecCCCcEEEEEEcc---CCCEEEE--CCEEccCC-------CCcEEEEEcccccc
Confidence            86 677888887665555556677788899999999964   8999999  88765211       12357899999999


Q ss_pred             CCeeeEEEEeeec-cccCCCCCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEEEEeecCCCeeeEeecCC
Q psy14896        362 DAGNYSCNVQSKV-SDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGS  438 (813)
Q Consensus       362 D~G~Y~C~a~n~~-g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~~~  438 (813)
                      |+|.|+|.|.|.. |.....+..+.|.|..+|.+.....|.      ...+.+|+.+.|.|.+.|+|.|.+.|++++.
T Consensus       153 ~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~------~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~  224 (265)
T 2oz4_A          153 NGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPG------NWTWPENSQQTPMCQAWGNPLPELKCLKDGT  224 (265)
T ss_dssp             TTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCS------EEEEETTCEECCCCCCEEESCCEEEEEETTT
T ss_pred             CCceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCC------ccEEcCCCeEEEEeECccCCCCeEEEEECCc
Confidence            9999999998655 544333345778887766543222111      2346677777777777777777777766654

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.95  E-value=1e-27  Score=253.50  Aligned_cols=220  Identities=13%  Similarity=0.178  Sum_probs=156.9

Q ss_pred             CCceeccCCCceEEeCCCCCCCc-----------cEEEEccCCCCCc----cc---CCCeEEEeeCccEEEEeecccCCe
Q psy14896        576 APEIGNQNWGKAMFCDPPTNYPG-----------VNYYWARDYFPNF----VE---EDKRVFVSYDGALYFSALEQIDAG  637 (813)
Q Consensus       576 ~~~~~~~g~~~~l~C~~~~~~p~-----------~~v~W~k~~~~~~----~~---~~~~~~~~~~~~L~i~~~~~~d~G  637 (813)
                      ....+.+|+.++|.|.+ .+.|.           +.|+|+|++....    +.   ...++ ...+++|.|.+++.+|+|
T Consensus        15 ~~v~v~~G~~v~L~C~~-~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~D~G   92 (349)
T 4dep_C           15 RQIQVFEDEPARIKCPL-FEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRI-SKEKDVLWFRPTLLNDTG   92 (349)
T ss_dssp             CCCEEETTSCEEEECTC-CCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCE-EEETTEEEESSCCGGGCE
T ss_pred             eeEEEecCCeEEEEccc-cccccccccccccCCCceEEEEECCCCCcccccccccccCceE-eecCCEEEEccCChhhCE
Confidence            44567899999999999 56554           9999999984211    11   12222 345678999999999999


Q ss_pred             eEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEe-----cCCCCCeEEEEeCCcc
Q psy14896        638 NYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVA-----FGYPVPSYNWTRRGSP  712 (813)
Q Consensus       638 ~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~-----~g~P~p~i~W~k~g~~  712 (813)
                      .|+|.|.|..|...   ..+.|.|..++.....    ....+....+.+|+.+.|.|.+     .|.|.|.|+|+|+|.+
T Consensus        93 ~Y~C~a~n~~~~~~---~~~~l~V~~~~~~~~~----~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~  165 (349)
T 4dep_C           93 NYTCMLRNTTYCSK---VAFPLEVVQKDSCFNS----PMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYK  165 (349)
T ss_dssp             EEEEEEECSSCEEE---EEEEEEEECCCTTSCC----SCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEE
T ss_pred             EEEEEEecCCceEE---EEEEEEEecCCcccCc----ccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEE
Confidence            99999999876543   3467888776643221    1111223467899999999985     7889999999999999


Q ss_pred             cCCCceeeecceEEEECCCCCCCCEEEEEEEEcCC-Cce---EEEEEEEEEc------CCcccccCCce--eecCCCeEE
Q psy14896        713 LPRNAYFENFNRILTIPNVKVEDQGEYICRASNDR-SAL---ESSVTISIQA------EPNFTIPLTDK--HMDNQADLT  780 (813)
Q Consensus       713 l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~-G~~---~~~~~l~V~~------~P~~~~~~~~~--~~~~g~~~~  780 (813)
                      |....++......|.|.+++.+|+|.|+|.|.|.. |..   +..+.|.|..      +|.+..++...  .+.+|++++
T Consensus       166 l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~  245 (349)
T 4dep_C          166 IQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELL  245 (349)
T ss_dssp             CCSCSSEEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC----------------C
T ss_pred             CCCccceeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEE
Confidence            97655555566789999999999999999999997 554   6788888877      57776555443  788999999


Q ss_pred             EEEEEc----ccCCceEEEEECCEeccc
Q psy14896        781 WTCEAF----GVPDVTYSWFRNGELGHQ  804 (813)
Q Consensus       781 l~C~~~----g~p~~~v~W~k~g~~l~~  804 (813)
                      |.|.+.    |.|.|.|.|+|||++|..
T Consensus       246 l~C~~~~~~~g~p~p~v~W~~~g~~l~~  273 (349)
T 4dep_C          246 IPCTVYFSFLMDSRNEVWWTIDGKKPDD  273 (349)
T ss_dssp             CCEEEEECCCTTCCCEEEEESSCC----
T ss_pred             EEEEEEEccCCCCCCEEEEEECCEEccc
Confidence            999999    679999999999999987

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.95  E-value=2.4e-27  Score=246.55  Aligned_cols=226  Identities=14%  Similarity=0.153  Sum_probs=151.5

Q ss_pred             CCCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCcccc
Q psy14896        188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE  267 (813)
Q Consensus       188 ~~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~  267 (813)
                      .+|.|...|. ..+.+|     ++++|.|.+.+. .+.+.|||+|..+...          ......+++|.|.+. +.+
T Consensus        23 ~~P~i~~~p~-~~v~~G-----~~v~L~C~~~~~-~~~~~W~k~g~~~~~~----------~~~~~~~~~L~I~~v-~~~   84 (316)
T 3vh8_G           23 DKPFLSAWPS-AVVPRG-----GHVTLRCHYRHR-FNNFMLYKEDRIHIPI----------FHGRIFQESFNMSPV-TTA   84 (316)
T ss_dssp             -CCEEEEESC-SEEETT-----SCEEEEEEBTTB-CCSEEEEESSCSSSCH----------HHHCCBSSCEEECSC-CGG
T ss_pred             CCCEeeccCC-CccCCC-----CCEEEEEEccCC-CceEEEEeCCCcccee----------ecCCcceEEEEECCC-Ccc
Confidence            4689999988 456666     779999999986 6899999999764211          111223667888885 899


Q ss_pred             CCeeEEEEeecCce----eeEeeeeEEeeeeec---ccccCCCCceeecCCCeEEEecCCCCCCcceEEEeecccccccc
Q psy14896        268 DRGSYHCKASNKFG----SIISESVQLAFGFIG---EFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVE  340 (813)
Q Consensus       268 d~G~Y~C~a~n~~g----~~~s~~~~l~v~~~~---~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~  340 (813)
                      |+|.|+|.|.|..+    ...+..+.|.|...+   .+...+. ..+.+|+.++|.|.+  ..|.+.+.|+|++..+...
T Consensus        85 D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~-~~v~~G~~v~L~C~~--~~~~~~~~w~k~g~~~~~~  161 (316)
T 3vh8_G           85 HAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPG-PLVKSGERVILQCWS--DIMFEHFFLHKEGISKDPS  161 (316)
T ss_dssp             GCEEEEEEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEESC-SEEETTCCEEEEEEE--SSCCSEEEEEETTCCSCCE
T ss_pred             cCeEEEEEEEcCCCCcceecCCCcEEEEEecCCCCCeEEecCC-CccCCCCeEEEEEcC--CCCCcEEEEEECCCccccc
Confidence            99999999986422    223566777775532   2322233 347889999999996  3466799999999875322


Q ss_pred             CCccEEE--ccCccEEEeeeeecCCeeeEEEEeeecccc--CCCCCceeeEEccCCcccccccCCCCCCCCCcCCCCCCc
Q psy14896        341 EDKRVFV--SYDGALYFSALEQIDAGNYSCNVQSKVSDT--GRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDK  416 (813)
Q Consensus       341 ~~~~~~~--~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~--~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~  416 (813)
                      .......  ...+.|.|.+++.+|+|.|+|.|.|..|..  ...+..+.|.|...+....+....      ...+.+|+.
T Consensus       162 ~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~------~~~v~~G~~  235 (316)
T 3vh8_G          162 RLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQP------GPKVQAGES  235 (316)
T ss_dssp             EEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEES------CSCCCTTSC
T ss_pred             eeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCC------CCeecCCCc
Confidence            1111111  124579999999999999999999987742  223455677776432211111111      125678888


Q ss_pred             EEEEEEEeecCCCeeeEeecCCcCC
Q psy14896        417 VRLECVAFGYPVPSYNWTRRGSPLP  441 (813)
Q Consensus       417 ~~l~C~~~g~p~p~i~W~~~~~~l~  441 (813)
                      ++|.|.+. .|.+.+.|+|+|..+.
T Consensus       236 v~L~C~~~-~~~~~~~W~k~g~~~~  259 (316)
T 3vh8_G          236 VTLSCSSR-SSYDMYHLSREGGAHE  259 (316)
T ss_dssp             CEEEEEES-SCCSEEEEEETTSSCC
T ss_pred             EEEEEECC-CCCcEEEEEECCCcCC
Confidence            88888886 3667788888776653

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.95  E-value=9.1e-27  Score=239.44  Aligned_cols=272  Identities=16%  Similarity=0.122  Sum_probs=188.4

Q ss_pred             CCCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEee--CCeEEEcCCcc
Q psy14896        188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS--GGNLIINDPRQ  265 (813)
Q Consensus       188 ~~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~  265 (813)
                      .+|.|...+.+..+.+|     ++++|.|.+.|.    |.|++++...             ......  .++|.|.+. +
T Consensus         3 ~~P~i~~~~~~~~v~~G-----~~v~L~C~~~~~----v~W~~~~~~~-------------~~~~~~~~~~~L~i~~~-~   59 (292)
T 4dkd_C            3 SIPVIEPSVPELVVKPG-----ATVTLRCVGNGS----VEWDGPPSPH-------------WTLYSDGSSSILSTNNA-T   59 (292)
T ss_dssp             -CCEEESCCSSCEECTT-----CCEEEEEECSSC----CCBCCCCCSS-------------CEECCBTTEEEEEESSC-C
T ss_pred             CCceecCCCCeEEEcCC-----CcEEEEEcCCCc----eEEccCCCCc-------------eEEeccCceEEEEEccc-c
Confidence            46889999988888887     679999999883    9999876421             111111  246777775 8


Q ss_pred             ccCCeeEEEEeecCceeeEeeeeEEeeeeeccc-ccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCcc
Q psy14896        266 VEDRGSYHCKASNKFGSIISESVQLAFGFIGEF-NLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKR  344 (813)
Q Consensus       266 ~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~-~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~  344 (813)
                      .+|+|.|+|.|.|..|.. +..+.|.|..++.+ ........+.+|+.++|.|.+....+.+.++|++++... +....+
T Consensus        60 ~~d~G~Y~C~~~n~~~~~-~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~-~~~~~~  137 (292)
T 4dkd_C           60 FQNTGTYRCTEPGDPLGG-SAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRP-LMRHTN  137 (292)
T ss_dssp             GGGCSCEEECCCC----C-CEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESSGGGGSSEEEEEGGGCC-CCSSCC
T ss_pred             cccCEEEEEEEccCCCCc-ceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCCCCcceeEEEEecCCCc-cccCCc
Confidence            999999999999988876 77788888776653 344556778899999999997542222789999984332 445566


Q ss_pred             EEEccCccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEcc----CCcccccccCCCCCCCCCcCCCCCCcEEEE
Q psy14896        345 VFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFP----HSNFQQLKFPNNFPKTFPEAPKAGDKVRLE  420 (813)
Q Consensus       345 ~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~----~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~  420 (813)
                      +....++.|.|.++..+|+|.|+|.|.|..+..  .+..+.|.|..    +|.+. .       ......+.+|+.+.|.
T Consensus       138 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~--~s~~~~l~V~~~~~~~p~i~-~-------~~~~~~~~~g~~v~l~  207 (292)
T 4dkd_C          138 YSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKV--MSISIRLKVQKVIPGPPALT-L-------VPAELVRIRGEAAQIV  207 (292)
T ss_dssp             EECCSSSCCEETTCCGGGCSEEEEEECSTTSCE--ECCCEEEEEECCCCSSCEEE-E-------ESSCBCCCSSSCEEEE
T ss_pred             ccccCCceEEECCCCHHHCeEEEEEEEeCCCce--eEEEEEEEEeCCCCCCCeEE-c-------cCCceeEecCCCEEEE
Confidence            777777889999999999999999999876532  23457888875    22221 1       1122356789999999


Q ss_pred             EEEeecCC-CeeeEeecCCcCCCCceeccccceEEEcccccccceEEeCCCceEecccccccccCeEEEEEeeccCCCcE
Q psy14896        421 CVAFGYPV-PSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSY  499 (813)
Q Consensus       421 C~~~g~p~-p~i~W~~~~~~l~~~~~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v  499 (813)
                      |.+.+.|. +.+.|++++..+.....                                                      
T Consensus       208 C~~~~~~~~~~~~w~~~~~~~~~~~~------------------------------------------------------  233 (292)
T 4dkd_C          208 CSASSVDVNFDVFLQHNNTKLAIPQQ------------------------------------------------------  233 (292)
T ss_dssp             EEEEESSSCCEEECCBSSCCCCCCBE------------------------------------------------------
T ss_pred             EEecCCCCceEEEEeCCCcccccCcc------------------------------------------------------
Confidence            99988765 46788888776543210                                                      


Q ss_pred             EEeeccccccceeccccCCCCCceEEeeCCeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEEeec
Q psy14896        500 EWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFI  568 (813)
Q Consensus       500 ~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~  568 (813)
                      ..+..                 .+ ....++|.|.++ ..+|+|.|+|.|.|..|.. +..+.|.|...
T Consensus       234 ~~~~~-----------------~~-~~~~~~L~i~~v-~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~~~  282 (292)
T 4dkd_C          234 SDFHN-----------------NR-YQKVLTLNLDQV-DFQHAGNYSCVASNVQGKH-STSMFFRVVES  282 (292)
T ss_dssp             EEEET-----------------TE-EEEEEEEEESSC-CTTSCEEEEEEEECSSCEE-EEEEEECC---
T ss_pred             ceecc-----------------ce-eeeEEEEEECcc-ChhcCeEEEEEEecCCCCc-eeEEEEEEeeC
Confidence            00011                 01 113457999997 8999999999999999986 44467776544

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.94  E-value=3.3e-27  Score=245.36  Aligned_cols=217  Identities=14%  Similarity=0.189  Sum_probs=164.3

Q ss_pred             ceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCc---cEEEEeecccCCeeEEEEEEeeecCccccC
Q psy14896        578 EIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDG---ALYFSALEQIDAGNYSCNVQSKVSDTGRNG  654 (813)
Q Consensus       578 ~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  654 (813)
                      ..+.+|+.++|.|....+.|.+.|+|+|++.+  +..+.++.+..++   +|.|.+++.+|+|.|+|.|.|..|...   
T Consensus        11 ~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~--i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~---   85 (312)
T 2y23_A           11 VNVDDDGVISLNFECDKMTPKSEFSWSKDYVS--TEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS---   85 (312)
T ss_dssp             EEECTTCCEEEEEECSSCCTTCCEEEEETTEE--CTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE---
T ss_pred             EEEecCCeEEEEEEEeCCCCCcEEEEEECCEE--CCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE---
Confidence            45678889988888866789999999999986  4445567666554   699999999999999999999887432   


Q ss_pred             ceeeEEEcc------------CCCccccccCCCCCCCCCcCCCCCCeEEEEEEec-CCCCCeEEEEeCCcccCCCceeee
Q psy14896        655 PFFPLKVFP------------HSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF-GYPVPSYNWTRRGSPLPRNAYFEN  721 (813)
Q Consensus       655 ~~~~l~v~~------------~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~-g~P~p~i~W~k~g~~l~~~~~~~~  721 (813)
                       .+.|.|..            +|.+...       ......+.+|++++|.|.+. |.|.|.++|+|+|..+..+.++..
T Consensus        86 -s~~l~v~~~~~~~~~~~~~~~p~~~~~-------~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~  157 (312)
T 2y23_A           86 -SYLIDEEELKRLLALSHEHKFPTVPVK-------SELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKM  157 (312)
T ss_dssp             -EEEECHHHHHHHHHHHHHHHSCBCCEE-------EEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEE
T ss_pred             -EEEEEEeeeeeeecccccCCCCccccc-------cCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEE
Confidence             24455543            3332211       11136688999999999999 899999999999999987654321


Q ss_pred             ------cceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE---------------------cCCcccccCCceeec
Q psy14896        722 ------FNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ---------------------AEPNFTIPLTDKHMD  774 (813)
Q Consensus       722 ------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~---------------------~~P~~~~~~~~~~~~  774 (813)
                            ....|.|.+++.+|+|.|+|.|.|..+..  ...+.+.                     .+|.|...+. ..+.
T Consensus       158 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~v~  234 (312)
T 2y23_A          158 HIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATN--HSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLS-WEVT  234 (312)
T ss_dssp             EEETTTTEEEEEESCCCGGGCEEEEEEEESSSCEE--EEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEEE-EEEE
T ss_pred             EEccCCCEEEEEEccCCcccCEeEEEEEEeCCceE--EEEEEEcchhhhhhcccccccccchhhccCCceeecce-EEEe
Confidence                  23459999999999999999998855444  4444441                     2355553333 6788


Q ss_pred             CCCeEEEEEEEcccCCc-eEEEEECCEeccccccccc
Q psy14896        775 NQADLTWTCEAFGVPDV-TYSWFRNGELGHQMTDLLL  810 (813)
Q Consensus       775 ~g~~~~l~C~~~g~p~~-~v~W~k~g~~l~~~~~~~i  810 (813)
                      +|+.+.|.|.+.|.|+| .|.|+|||++|..+.++.+
T Consensus       235 ~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~~~~~~~  271 (312)
T 2y23_A          235 GECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF  271 (312)
T ss_dssp             TTTEEEEEEEEESCCSSCEEEEEETTEEEEEECCC--
T ss_pred             CCCEEEEEEEEcCCCCCCEEEEeeCCEECCCCCcEEE
Confidence            99999999999999988 9999999999997666544

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.94  E-value=3.1e-25  Score=238.34  Aligned_cols=357  Identities=14%  Similarity=0.122  Sum_probs=218.6

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeec--ccccccccccccccCCCccEEee----CCeEEEcC
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKE--DYVQDRLVANLIDPLSDKRFTLS----GGNLIIND  262 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~--g~~l~~~~~~~~~~~~~~~~~~~----~~~l~i~~  262 (813)
                      +|.|+. |.+..+.+|     +++.|.|.+.|.|.|.|+|+|+  |..+....     ...+.++.+.    +++|.|.+
T Consensus         1 ~P~i~~-~~~~~~~~G-----~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~L~i~~   69 (389)
T 2jll_A            1 QPHIIQ-LKNETTYEN-----GQVTLVCDAEGEPIPEITWKRAVDGFTFTEGD-----KSLDGRIEVKGQHGSSSLHIKD   69 (389)
T ss_dssp             CCEEEE-CCCEEEETT-----SEEEEEEEEECSSCCEEEEEETTTTEEECC-------CCSSSSEEEEECSSEEEEEEES
T ss_pred             CCeEEe-cCceEEeCC-----CeEEEEEEeecccCCeEEEEeCCCCceeccCc-----CCCCCeEEEeccCCcceEEEcc
Confidence            367776 666777666     7799999999999999999999  77653211     1123455543    35788888


Q ss_pred             CccccCCeeEEEEeecCceeeEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCC
Q psy14896        263 PRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEED  342 (813)
Q Consensus       263 ~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~  342 (813)
                      . +.+|+|.|+|.|.|..|.. +..+.|.|..+|.+........+.+|+.+.|.|.+ .|.|.+.++|+|+|.++.....
T Consensus        70 v-~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~i~W~~~g~~l~~~~~  146 (389)
T 2jll_A           70 V-KLSDSGRYDCEAASRIGGH-QKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDV-KSNPPASIHWRRDKLVLPAKNT  146 (389)
T ss_dssp             C-CGGGCEEEEEEEECSSCEE-EEEEEEEEEEEEEECCSCCEEEECTTCCEEEEECE-EEESCCEEEEEETTEESSCTTC
T ss_pred             c-ChhhCEEEEEEEEeCCCCc-ceEEEEEEEeCCEEecCcceEEeccCCEEEEEEEE-EecCCCeEEEEECCccCCcccC
Confidence            5 8999999999999999987 78899999988887665544467889999999985 6889999999999988655544


Q ss_pred             ccEEEccC---ccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEE
Q psy14896        343 KRVFVSYD---GALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRL  419 (813)
Q Consensus       343 ~~~~~~~~---~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l  419 (813)
                      .++.+..+   ..|.|.++..+|+|.|+|.|.|..|....   .+.|.+...|..     |..    .......+..+.|
T Consensus       147 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~---~~~l~v~~~P~~-----P~~----~~~~~~~~~~~~l  214 (389)
T 2jll_A          147 TNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQ---EYILALADVPSS-----PYG----VKIIELSQTTAKV  214 (389)
T ss_dssp             TTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEE---EEEEEECCCCCC-----CEE----EEEEEECSSCEEE
T ss_pred             ceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEE---EEEEEecCCCCC-----Ccc----eEEeeccCCEEEE
Confidence            45555443   36999999999999999999999886432   255555332210     000    0000112233444


Q ss_pred             EEEEeecCCCeeeEeecCCcCCCCceeccccceEEEcccccccceEEeCCCceEecccccccccCeEEEEEeeccCC--C
Q psy14896        420 ECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPN--P  497 (813)
Q Consensus       420 ~C~~~g~p~p~i~W~~~~~~l~~~~~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~--~  497 (813)
                      .|......                                                                .|.|.  .
T Consensus       215 ~w~~p~~~----------------------------------------------------------------~g~pi~~y  230 (389)
T 2jll_A          215 SFNKPDSH----------------------------------------------------------------GGVPIHHY  230 (389)
T ss_dssp             EEECCSCC----------------------------------------------------------------TTSCEEEE
T ss_pred             EEeCCCCC----------------------------------------------------------------CCcceEEE
Confidence            44321000                                                                00111  1


Q ss_pred             cEEEeeccccccceeccccCCCCCceEEe--eCCeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEEeeccc-cccc
Q psy14896        498 SYEWFKEDYVQDRLVANLIDPLSDKRFTL--SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGE-FNLK  574 (813)
Q Consensus       498 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~p~-~~~~  574 (813)
                      .+.|.+++...            ......  ....+.|.++ ...+.|.|+|.|.|..|...... .+.+...+. ....
T Consensus       231 ~v~~~~~~~~~------------~~~~~~~~~~~~~~i~~l-~~~~~y~~~v~A~N~~G~~~~s~-~~~~~t~~~~~p~~  296 (389)
T 2jll_A          231 QVDVKEVASEI------------WKIVRSHGVQTMVVLNNL-EPNTTYEIRVAAVNGKGQGDYSK-IEIFQTLPVREPSP  296 (389)
T ss_dssp             EEEEEETTCSC------------CEEEECSTTCSEEEECSC-CTTCEEEEEEEEEESSCBCCCCC-CEEEECCCCCCCCC
T ss_pred             EEEEEECCCcc------------cEEeeccCCcceEEECCc-cCCCEEEEEEEEEcCCccCCCCc-ceEEEecCCCCCCC
Confidence            34455544210            001111  2257889886 89999999999999988753222 122221111 0011


Q ss_pred             CCC-ceeccCCCceEEeCCCC--CCCccE--EEEccCCCCCcccCCCeEEEee-CccEEEEeecccCCeeEEEEEEeeec
Q psy14896        575 RAP-EIGNQNWGKAMFCDPPT--NYPGVN--YYWARDYFPNFVEEDKRVFVSY-DGALYFSALEQIDAGNYSCNVQSKVS  648 (813)
Q Consensus       575 ~~~-~~~~~g~~~~l~C~~~~--~~p~~~--v~W~k~~~~~~~~~~~~~~~~~-~~~L~i~~~~~~d~G~Y~C~a~n~~g  648 (813)
                      +.. ........+.|.|..+.  +.+...  |.|...+..   .......+.. ...+.|.++.......|++.|.|..|
T Consensus       297 p~~~~~~~~~~~v~l~W~~p~~~~~~i~~Y~v~~~~~~~~---~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~V~A~n~~G  373 (389)
T 2jll_A          297 PSIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKE---DQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLG  373 (389)
T ss_dssp             CCEEEEEETTTEEEEEECCCCCCSSCCCEEEEEEEC--------CCBCCEECTTCCEEEECSCCTTCEEEEEEEEEC-CC
T ss_pred             CccccccCcCCEEEEEEECCCCCCCcccEEEEEEEeCCCC---cceeEeeccCCcceEEeCCcCCCCEEEEEEEEEcCCc
Confidence            111 11224556788888632  112222  333322210   0000111222 22478889999999999999999998


Q ss_pred             Cccc
Q psy14896        649 DTGR  652 (813)
Q Consensus       649 ~~~~  652 (813)
                      ....
T Consensus       374 ~s~~  377 (389)
T 2jll_A          374 YSEP  377 (389)
T ss_dssp             BCCC
T ss_pred             CCCc
Confidence            7433

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.94  E-value=1.8e-26  Score=236.86  Aligned_cols=261  Identities=13%  Similarity=0.115  Sum_probs=173.4

Q ss_pred             CCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCccEEEccC----ccEEEeeeeecCCeeeEEEEeeecccc
Q psy14896        302 RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD----GALYFSALEQIDAGNYSCNVQSKVSDT  377 (813)
Q Consensus       302 ~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~----~~L~i~~v~~~D~G~Y~C~a~n~~g~~  377 (813)
                      .....+.+|+.++|.|.+. +.    ++|+|++..+.    .+.....+    ++|.|.+++.+|+|.|+|.|.|..|..
T Consensus         7 ~~~~~v~~G~~v~L~C~~~-~~----v~W~~~~~~~~----~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~   77 (289)
T 3mjg_X            7 GPELVLNVSSTFVLTCSGS-AP----VVWERMSQEPP----QEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLE   77 (289)
T ss_dssp             CSEEECCTTCCEEEEEEES-SC----CEEEBTTBCCS----EEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC-----
T ss_pred             CCeEEEeCCCcEEEEEecc-ce----EEEECCCCCcc----cceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCCC
Confidence            3445678899999999964 32    99999998752    23344333    479999999999999999999988753


Q ss_pred             CCCCCceeeEEccCCcccccccCCCCCCCCC---cCCCCCCcEEEEEEEeecCCCeeeEeecCCcCCCCceeccccceEE
Q psy14896        378 GRNGPFFPLKVFPHSNFQQLKFPNNFPKTFP---EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILT  454 (813)
Q Consensus       378 ~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~---~~v~~g~~~~l~C~~~g~p~p~i~W~~~~~~l~~~~~~~~~~~~l~  454 (813)
                      ...+..+.|.|..+..       ..++....   ..+.+|+.+.|.|.+. .|.|.++|++.+.......          
T Consensus        78 ~~~~~~~~v~v~~p~~-------~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~~----------  139 (289)
T 3mjg_X           78 TDERKRLYIFVPDPTV-------GFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALPV----------  139 (289)
T ss_dssp             -CCCEEEEEECCCTTC-------CBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCCC----------
T ss_pred             cCcEEeEEEEEECCCc-------CcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccce----------
Confidence            3333334444432211       01111111   3588999999999998 6788888887642211000          


Q ss_pred             EcccccccceEEeCCCceEecccccccccCeEEEEEeeccCCCcEEEeeccccccceeccccCCCCCceEEeeCCeEEEe
Q psy14896        455 IPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIIN  534 (813)
Q Consensus       455 i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~  534 (813)
                                                                   .|                       ... ..+.  
T Consensus       140 ---------------------------------------------~~-----------------------~~~-~~~~--  148 (289)
T 3mjg_X          140 ---------------------------------------------PY-----------------------DHQ-RGFS--  148 (289)
T ss_dssp             ---------------------------------------------CE-----------------------ETT-TEEE--
T ss_pred             ---------------------------------------------ee-----------------------cCC-cCee--
Confidence                                                         00                       000 0011  


Q ss_pred             CCCCCCCCceEEEEEEcCceeEEeecEEEEEee--cccccccCCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcc
Q psy14896        535 DPRQVEDRGSYHCKASNKFGSIISESVQLAFGF--IGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFV  612 (813)
Q Consensus       535 ~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~--~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~  612 (813)
                         ...|+|.|+|.|.|..+...+..+.|.|..  +|.+........+.+|+.++|.|.+ .+.|.+.|+|++++.....
T Consensus       149 ---~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~-~g~p~p~v~W~~~~~~~~~  224 (289)
T 3mjg_X          149 ---GIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIV-IGNEVVNFEWTYPRKESGR  224 (289)
T ss_dssp             ---ECCCSSEEEEEEEETTEEEECCCEEEEECCCCCCCCEEEESCSEEETTSCEEEEEEE-ESCSSBEEEEECTTSSSSC
T ss_pred             ---eeccCcEEEEEEEeCCceeeeeeEEEEecCCCCCCcEEeCCcceeEcCCCEEEEEEE-CCCCCcceEEEcCCccCCC
Confidence               246899999999998888777777777765  5555555566778899999999999 7899999999988764322


Q ss_pred             cCCCeEEEe------eCccEEEEeecccCCeeEEEEEEeeecCccccCceeeEEEccCCCc
Q psy14896        613 EEDKRVFVS------YDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNF  667 (813)
Q Consensus       613 ~~~~~~~~~------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~  667 (813)
                      .........      ..++|.|.+++.+|+|.|+|.|.|..|.....   +.|.|...+..
T Consensus       225 ~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~---~~l~v~~~~~~  282 (289)
T 3mjg_X          225 LVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDE---KAINITVVESG  282 (289)
T ss_dssp             CCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEE---EEEEEEEEC--
T ss_pred             cccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeE---EEEEEEEEecC
Confidence            111112221      23569999999999999999999999876543   67777766543

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.94  E-value=1.8e-25  Score=231.25  Aligned_cols=265  Identities=18%  Similarity=0.231  Sum_probs=193.2

Q ss_pred             CCCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe---eCC--eEEEcC
Q psy14896        188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL---SGG--NLIIND  262 (813)
Q Consensus       188 ~~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~---~~~--~l~i~~  262 (813)
                      .+|.|+..|.+..+.+|     ++++|.|.+.|.|.+.|.|+|+|..+.         ..+.++..   .++  +|.|.+
T Consensus         3 ~~P~~~~~p~~~~v~~G-----~~v~l~C~~~g~p~~~v~W~~~~~~~~---------~~~~~~~~~~~~~~~~~L~i~~   68 (305)
T 2nzi_A            3 MAPHFKEELRNLNVRYQ-----SNATLVCKVTGHPKPIVKWYRQGKEII---------ADGLKYRIQEFKGGYHQLIIAS   68 (305)
T ss_dssp             CCCEEEECCCCEEECTT-----CCEEEEEEEECSSCCEEEEEETTEECC---------CCSSSEEEEEETTTEEEEEESS
T ss_pred             CCCeeeecccceEEeCC-----CcEEEEEEEeCCCCCeEEEEECCEEcc---------cCCCeEEEEECCCCEEEEEEcc
Confidence            47999999999998887     669999999999999999999998763         12223332   233  688887


Q ss_pred             CccccCCeeEEEEeecCceeeEeeeeEEeeeeecccccC-----CCCceeecCCCeEEEecCCCCCCcceEEEeeccccc
Q psy14896        263 PRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK-----RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPN  337 (813)
Q Consensus       263 ~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~-----~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~  337 (813)
                      . +.+|+|.|+|.|.|..|.. +..+.|.|..+|.+...     .....+..|+.+.|.|.+ .|.|.+.+.|++++..+
T Consensus        69 v-~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~i~W~~~~~~~  145 (305)
T 2nzi_A           69 V-TDDDATVYQVRATNQGGSV-SGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF-SGKPDPVITWQKGQDLI  145 (305)
T ss_dssp             C-CGGGCSEEEEEEEETTEEE-EEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEE-EEESCCEEEEEESSSBC
T ss_pred             C-ChhhCeEEEEEEEcCCCCc-cceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEE-CCCCCCEEEEEECCEEC
Confidence            5 8999999999999999986 77888888877664432     245667789999999995 78899999999999875


Q ss_pred             cccCCccEEEc---cCccEEEee-eeecCCeeeEEEEeeeccccCCCCCceeeEEccCCcccccccCCCCCCCCCcCCCC
Q psy14896        338 FVEEDKRVFVS---YDGALYFSA-LEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA  413 (813)
Q Consensus       338 ~~~~~~~~~~~---~~~~L~i~~-v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~  413 (813)
                      .  ...++.+.   ..+.|.|.+ +..+|+|.|+|.|.|..|....   .+.|.|...|...     ..    .......
T Consensus       146 ~--~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~---~~~l~v~~~P~~p-----~~----~~~~~~~  211 (305)
T 2nzi_A          146 D--NNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQK---TVELDVADVPDPP-----RG----VKVSDVS  211 (305)
T ss_dssp             C--SSSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEE---EEEEEEEBCCCCC-----EE----EEEESCC
T ss_pred             C--CCCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCceee---EEEEEEecCCCCC-----CC----ceeeecc
Confidence            3  33343333   234799999 9999999999999999886433   3677776543211     00    0001123


Q ss_pred             CCcEEEEEEEeecCCCeeeEeecCCcCCCCceeccccceEEEcccccccceEEeCCCceEecccccccccCeEEEEEeec
Q psy14896        414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGG  493 (813)
Q Consensus       414 g~~~~l~C~~~g~p~p~i~W~~~~~~l~~~~~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g  493 (813)
                      +..+.|            .|....                                          ..|....+.|.+..
T Consensus       212 ~~~v~l------------~w~~p~------------------------------------------~~g~~~i~~y~v~~  237 (305)
T 2nzi_A          212 RDSVNL------------TWTEPA------------------------------------------SDGGSKITNYIVEK  237 (305)
T ss_dssp             SSCEEE------------EEECCS------------------------------------------CCSBSCEEEEEEEE
T ss_pred             CCEEEE------------EEcCCc------------------------------------------cCCCCceeEEEEEE
Confidence            344444            443211                                          12344567788888


Q ss_pred             cCCCcEEEeeccccccceeccccCCCCCceEEeeCCeEEEeCCCCCCCCceEEEEEEcCceeEE
Q psy14896        494 YPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSII  557 (813)
Q Consensus       494 ~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~  557 (813)
                      .|.+...|.+.+..                   ....+.|.++ ...+.|.|+|.|.|..|...
T Consensus       238 ~~~~~~~w~~~~~~-------------------~~~~~~i~~l-~~~~~y~~~~~A~N~~G~~~  281 (305)
T 2nzi_A          238 CATTAERWLRVGQA-------------------RETRYTVINL-FGKTSYQFRVIAENKFGLSK  281 (305)
T ss_dssp             EETTSCCEEEEEEE-------------------SSSEEEECSC-CSSCEEEEEEEEEETTEECC
T ss_pred             ecCCCCccEECccc-------------------cCceEEecCC-CCCCeEEEEEEEEeCCcccC
Confidence            88888999887621                   1567899997 89999999999999999753

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.94  E-value=3.7e-25  Score=237.67  Aligned_cols=285  Identities=16%  Similarity=0.219  Sum_probs=198.8

Q ss_pred             ccccCeEEEEEeeccCCCcEEEeec--cccccceeccccCCCCCceEEee----CCeEEEeCCCCCCCCceEEEEEEcCc
Q psy14896        480 SILNDITLSCYAGGYPNPSYEWFKE--DYVQDRLVANLIDPLSDKRFTLS----GGNLIINDPRQVEDRGSYHCKASNKF  553 (813)
Q Consensus       480 ~~g~~~~l~C~~~g~p~~~v~W~k~--~~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~d~G~Y~C~a~n~~  553 (813)
                      .+|+.++|.|.+.|.|.|.|.|+|+  |..+...     ......++.+.    .++|.|.++ ..+|+|.|+|.|.|..
T Consensus        13 ~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~L~i~~v-~~~D~G~Y~C~a~n~~   86 (389)
T 2jll_A           13 YENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEG-----DKSLDGRIEVKGQHGSSSLHIKDV-KLSDSGRYDCEAASRI   86 (389)
T ss_dssp             ETTSEEEEEEEEECSSCCEEEEEETTTTEEECC-------CCSSSSEEEEECSSEEEEEEESC-CGGGCEEEEEEEECSS
T ss_pred             eCCCeEEEEEEeecccCCeEEEEeCCCCceeccC-----cCCCCCeEEEeccCCcceEEEccc-ChhhCEEEEEEEEeCC
Confidence            6799999999999999999999999  7554211     01113344443    358999997 9999999999999999


Q ss_pred             eeEEeecEEEEEeecccccccCCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCc---cEEEEe
Q psy14896        554 GSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDG---ALYFSA  630 (813)
Q Consensus       554 g~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~---~L~i~~  630 (813)
                      |.. +..+.|.|..+|.+........+.+|+.++|.|.+ .|.|.+.|+|+|+|.++......++.+..++   +|.|.+
T Consensus        87 g~~-~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~  164 (389)
T 2jll_A           87 GGH-QKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDV-KSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAP  164 (389)
T ss_dssp             CEE-EEEEEEEEEEEEEECCSCCEEEECTTCCEEEEECE-EEESCCEEEEEETTEESSCTTCTTEEEEECSSCEEEEECC
T ss_pred             CCc-ceEEEEEEEeCCEEecCcceEEeccCCEEEEEEEE-EecCCCeEEEEECCccCCcccCceEEEeccCCEEEEEECC
Confidence            987 56689999999887665544467889999999999 7899999999999987544444456555443   599999


Q ss_pred             ecccCCeeEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEec----CCCCC--eE
Q psy14896        631 LEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF----GYPVP--SY  704 (813)
Q Consensus       631 ~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~----g~P~p--~i  704 (813)
                      +..+|+|.|+|.|.|..|....   .+.|.+...|....         ........+..+.|.|...    |.|..  .+
T Consensus       165 ~~~~d~G~Y~C~a~N~~G~~~~---~~~l~v~~~P~~P~---------~~~~~~~~~~~~~l~w~~p~~~~g~pi~~y~v  232 (389)
T 2jll_A          165 TSDNDFGRYNCTATNHIGTRFQ---EYILALADVPSSPY---------GVKIIELSQTTAKVSFNKPDSHGGVPIHHYQV  232 (389)
T ss_dssp             CSTTSSEEEEEEEEETTEEEEE---EEEEEECCCCCCCE---------EEEEEEECSSCEEEEEECCSCCTTSCEEEEEE
T ss_pred             CChhhCEEEEEEEEcCCCcEEE---EEEEEecCCCCCCc---------ceEEeeccCCEEEEEEeCCCCCCCcceEEEEE
Confidence            9999999999999999987543   35666655543221         0001123457889999742    33433  57


Q ss_pred             EEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCCc-ccccCCcee-ecCCCeEEEE
Q psy14896        705 NWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPN-FTIPLTDKH-MDNQADLTWT  782 (813)
Q Consensus       705 ~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~-~~~~~~~~~-~~~g~~~~l~  782 (813)
                      .|.+++...-...........|.|.++...|.|.|+|.|.|..|....+..+.+...|. .+..+.... ...+..+.|.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~~t~~~~~p~~p~~~~~~~~~~~v~l~  312 (389)
T 2jll_A          233 DVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIHGQPSSGKSFKLS  312 (389)
T ss_dssp             EEEETTCSCCEEEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEEECCCCCCCCCCCEEEEEETTTEEEEE
T ss_pred             EEEECCCcccEEeeccCCcceEEECCccCCCEEEEEEEEEcCCccCCCCcceEEEecCCCCCCCCccccccCcCCEEEEE
Confidence            88888763322111122346799999999999999999999999765544455543222 122221111 2245566666


Q ss_pred             EE
Q psy14896        783 CE  784 (813)
Q Consensus       783 C~  784 (813)
                      ..
T Consensus       313 W~  314 (389)
T 2jll_A          313 IT  314 (389)
T ss_dssp             EC
T ss_pred             EE
Confidence            65

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.93  E-value=3.9e-25  Score=228.80  Aligned_cols=247  Identities=17%  Similarity=0.222  Sum_probs=177.3

Q ss_pred             EEeCCCceEecccccccccCeEEEEEeeccCCCcEEEeeccccccceeccccCCCCCceEEe---eCC--eEEEeCCCCC
Q psy14896        465 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL---SGG--NLIINDPRQV  539 (813)
Q Consensus       465 ~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~---~~~--~l~i~~~~~~  539 (813)
                      +...|.++.+     .+|+.++|.|.+.|.|.+.+.|+|+|..+.        . ...++.+   .++  +|.|.++ ..
T Consensus         7 ~~~~p~~~~v-----~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~--------~-~~~~~~~~~~~~~~~~L~i~~v-~~   71 (305)
T 2nzi_A            7 FKEELRNLNV-----RYQSNATLVCKVTGHPKPIVKWYRQGKEII--------A-DGLKYRIQEFKGGYHQLIIASV-TD   71 (305)
T ss_dssp             EEECCCCEEE-----CTTCCEEEEEEEECSSCCEEEEEETTEECC--------C-CSSSEEEEEETTTEEEEEESSC-CG
T ss_pred             eeecccceEE-----eCCCcEEEEEEEeCCCCCeEEEEECCEEcc--------c-CCCeEEEEECCCCEEEEEEccC-Ch
Confidence            3344444444     789999999999999999999999996542        1 1222222   233  8999997 99


Q ss_pred             CCCceEEEEEEcCceeEEeecEEEEEeeccccccc-----CCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccC
Q psy14896        540 EDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK-----RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEE  614 (813)
Q Consensus       540 ~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~p~~~~~-----~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~  614 (813)
                      +|+|.|+|.|.|..|.. +..+.|.|..+|.+...     .....+..|+.++|.|.+ .|.|.+.+.|+|++..+  ..
T Consensus        72 ~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~i~W~~~~~~~--~~  147 (305)
T 2nzi_A           72 DDATVYQVRATNQGGSV-SGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF-SGKPDPVITWQKGQDLI--DN  147 (305)
T ss_dssp             GGCSEEEEEEEETTEEE-EEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEE-EEESCCEEEEEESSSBC--CS
T ss_pred             hhCeEEEEEEEcCCCCc-cceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEE-CCCCCCEEEEEECCEEC--CC
Confidence            99999999999998886 55678888777654332     234556789999999999 79999999999999763  33


Q ss_pred             CCeEEEee---CccEEEEe-ecccCCeeEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeE
Q psy14896        615 DKRVFVSY---DGALYFSA-LEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKV  690 (813)
Q Consensus       615 ~~~~~~~~---~~~L~i~~-~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v  690 (813)
                      ..++.+..   .++|.|.+ +..+|+|.|+|.|.|..|....   .+.|.|...|......         ......+..+
T Consensus       148 ~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~---~~~l~v~~~P~~p~~~---------~~~~~~~~~v  215 (305)
T 2nzi_A          148 NGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQK---TVELDVADVPDPPRGV---------KVSDVSRDSV  215 (305)
T ss_dssp             SSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEE---EEEEEEEBCCCCCEEE---------EEESCCSSCE
T ss_pred             CCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCceee---EEEEEEecCCCCCCCc---------eeeeccCCEE
Confidence            44444432   34699999 9999999999999999987543   4677877665432110         0111233444


Q ss_pred             E--------------EEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceE
Q psy14896        691 R--------------LECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALE  751 (813)
Q Consensus       691 ~--------------l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~  751 (813)
                      .              +.|.+.+.|.+...|.+.+...         ...|.|.++...|.|.|+|.|.|..|...
T Consensus       216 ~l~w~~p~~~g~~~i~~y~v~~~~~~~~~w~~~~~~~---------~~~~~i~~l~~~~~y~~~~~A~N~~G~~~  281 (305)
T 2nzi_A          216 NLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQAR---------ETRYTVINLFGKTSYQFRVIAENKFGLSK  281 (305)
T ss_dssp             EEEEECCSCCSBSCEEEEEEEEEETTSCCEEEEEEES---------SSEEEECSCCSSCEEEEEEEEEETTEECC
T ss_pred             EEEEcCCccCCCCceeEEEEEEecCCCCccEECcccc---------CceEEecCCCCCCeEEEEEEEEeCCcccC
Confidence            4              4555555555555666544322         55799999999999999999999998654

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.93  E-value=2.1e-26  Score=240.03  Aligned_cols=249  Identities=17%  Similarity=0.242  Sum_probs=157.4

Q ss_pred             cCeEEEEEeecc-C-CCcEEEeeccccccceecc-ccCCCCCceEEeeCCeEEEeCCCCCCCCceEEEEEEcCceeEEee
Q psy14896        483 NDITLSCYAGGY-P-NPSYEWFKEDYVQDRLVAN-LIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE  559 (813)
Q Consensus       483 ~~~~l~C~~~g~-p-~~~v~W~k~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~  559 (813)
                      +.++|.|.+.|. | .+.|+|+|+|..+...... ..... ...+. ..+.|.|... ..+|+|.|+|.|.|..+.....
T Consensus        25 ~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~-~g~~~-~~s~l~i~~~-~~~d~g~Y~C~a~n~~~~~~~~  101 (323)
T 2wqr_A           25 PTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQE-GELAS-TQSELTLSQK-HWLSDRTYTCQVTYQGHTFEDS  101 (323)
T ss_dssp             SEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEE-TTEEE-EEEEEEEEHH-HHHTTCCEEEEEEETTEEEEEE
T ss_pred             CcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCcc-CCcEE-EEEEEEEcHH-HcCCCCcEEEEEEeCCCCccee
Confidence            689999999986 4 4789999999765321100 00000 11111 1235777764 6779999999999988764321


Q ss_pred             cEEEEE---eecccc-cccCCCceeccCCCceEEeCCCCCCCcc---EEEEccCCCCCcccCCCeEEE-------eeCcc
Q psy14896        560 SVQLAF---GFIGEF-NLKRAPEIGNQNWGKAMFCDPPTNYPGV---NYYWARDYFPNFVEEDKRVFV-------SYDGA  625 (813)
Q Consensus       560 ~~~l~v---~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~~p~~---~v~W~k~~~~~~~~~~~~~~~-------~~~~~  625 (813)
                       +.+.+   ...|.+ ...+....+.+|+.++|.|.+....|.+   .|+|+|++... +........       ..+++
T Consensus       102 -~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~-~~~~~~~~~~~~~g~~~~~~~  179 (323)
T 2wqr_A          102 -TKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKP-VNHSTRKEEKQRNGTLTVTST  179 (323)
T ss_dssp             -ECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCC-CCCCCCEEEECTTSCEEEEEE
T ss_pred             -eecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcc-cccccCCCccCCCCCEEEEEE
Confidence             21100   111222 2222233467899999999984335656   99999975322 211111111       12346


Q ss_pred             EEEEeecccCCeeEEEEEEeeecCccccCceeeEEEc------cCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCC
Q psy14896        626 LYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF------PHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGY  699 (813)
Q Consensus       626 L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~------~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~  699 (813)
                      |.|.++..+|+|.|+|.|.|..+..     ...+.|.      .+|.+.....+        .....|+.++|.|.+.|.
T Consensus       180 L~I~~~~~~D~G~Y~C~a~n~~~~~-----~~~~~v~~~~~~~~~P~v~~~~~~--------~~~~~g~~~~l~C~~~g~  246 (323)
T 2wqr_A          180 LPVGTRDWIEGETYQCRVTHPHLPR-----ALMRSTTKTSGPRAAPEVYAFATP--------EWPGSRDKRTLACLIQNF  246 (323)
T ss_dssp             EECCHHHHHTTCCEEEEEECTTSSS-----CEEEEECCCCSCCBCCEEEEEECC--------CCTTCTTEEEEEEEEEEE
T ss_pred             EEECHHHccCCCCEEEEEECCCCCC-----CeeeEEEccCCCCCCCEEEEeCCC--------hHHhcCCcEEEEEEeeee
Confidence            9999999999999999999986422     1234442      23332221111        112239999999999984


Q ss_pred             -CCC-eEEEEeCCcccCCCcee------e-----ecceEEEECCCCCCCCEEEEEEEEcCCCc
Q psy14896        700 -PVP-SYNWTRRGSPLPRNAYF------E-----NFNRILTIPNVKVEDQGEYICRASNDRSA  749 (813)
Q Consensus       700 -P~p-~i~W~k~g~~l~~~~~~------~-----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~  749 (813)
                       |++ .|+|+|||.+|..+...      .     ...+.|.|..+..+|+|.|+|.|.|..+.
T Consensus       247 ~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          247 MPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS  309 (323)
T ss_dssp             BSSCCEEEEEETTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred             eCCCcEEEEEECCEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence             443 89999999988654321      0     11357999999999999999999999876

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.92  E-value=1.1e-24  Score=229.28  Aligned_cols=256  Identities=16%  Similarity=0.214  Sum_probs=162.0

Q ss_pred             ccccCeEEEEEeeccC--CCcEEEeec--cccccceecc-------ccCCCCCceEEee------CCeEEEeCCCCCCCC
Q psy14896        480 SILNDITLSCYAGGYP--NPSYEWFKE--DYVQDRLVAN-------LIDPLSDKRFTLS------GGNLIINDPRQVEDR  542 (813)
Q Consensus       480 ~~g~~~~l~C~~~g~p--~~~v~W~k~--~~~~~~~~~~-------~~~~~~~~~~~~~------~~~l~i~~~~~~~d~  542 (813)
                      .+|+.++|.|.+.+.+  .+.|.|+|+  |..+..+...       ........|+.+.      ..+|.|.++ +.+|+
T Consensus        13 ~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v-~~~D~   91 (344)
T 1za6_B           13 KPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSL-RSEDT   91 (344)
T ss_dssp             CTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSC-CGGGC
T ss_pred             eCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCC-CcccC
Confidence            7899999999999874  678999997  4332211100       0011223455443      148999997 99999


Q ss_pred             ceEEEEEEcCceeEEeecEEEEEee----cccccccCCCceeccCCCceEEeCCCCCCCc-cEEEEccCCCCCccc----
Q psy14896        543 GSYHCKASNKFGSIISESVQLAFGF----IGEFNLKRAPEIGNQNWGKAMFCDPPTNYPG-VNYYWARDYFPNFVE----  613 (813)
Q Consensus       543 G~Y~C~a~n~~g~~~s~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~v~W~k~~~~~~~~----  613 (813)
                      |.|+|.|.|..+.. ...+.|.|..    +|.+........+.+|+.++|.|.+....|. +.|+|+|+|.++...    
T Consensus        92 G~Y~C~~~n~~~~~-~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~  170 (344)
T 1za6_B           92 AVYFCTRSLNMAYW-GQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPA  170 (344)
T ss_dssp             EEEEEEETTTTCEE-CCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTTEEECCC
T ss_pred             EEEEEEEecCccee-cCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCccCceeECCC
Confidence            99999999965433 3446677752    2333322223345789999999999433465 799999999753211    


Q ss_pred             ---CCCeEEEeeCccEEEEeecccCCeeEEEEEEeeecCccccCceeeE----------------------EEccCCCcc
Q psy14896        614 ---EDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPL----------------------KVFPHSNFQ  668 (813)
Q Consensus       614 ---~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l----------------------~v~~~p~~~  668 (813)
                         .+.++..  .+.|.|.++..+| |.|+|.|.|..|..... ..+.+                      .+..+|.+.
T Consensus       171 ~~~~~~~~~~--~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~P~v~  246 (344)
T 1za6_B          171 VLQSSGLYSL--SSVVTVPSSSLGT-QTYICNVNHKPSNTKVD-KKVEPKSCDKTHTCPPCGGGSSGGGSGGQPREPQVY  246 (344)
T ss_dssp             EECTTSCEEE--EEEEEEETTHHHH-BCEEEEEEEGGGTEEEE-EEECCCCC--------------------CCBCCEEE
T ss_pred             eECCCCCEEE--EEEEEEcHHHcCC-CcEEEEEEeCCCCccce-EeecccccccccccCCCCCCccccccCCCCcCCEEE
Confidence               1112211  2368999999888 99999999998753211 00110                      111222221


Q ss_pred             ccccCCCCCCCCCcCCCCCCeEEEEEEecCC-C-CCeEEEEeCCcccCCCceee---ec------ceEEEECCCCCCCCE
Q psy14896        669 QLKFPNNFPKTFPEAPKAGDKVRLECVAFGY-P-VPSYNWTRRGSPLPRNAYFE---NF------NRILTIPNVKVEDQG  737 (813)
Q Consensus       669 ~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~-P-~p~i~W~k~g~~l~~~~~~~---~~------~~~L~i~~v~~~d~G  737 (813)
                      ..  +    + . .....|+.++|.|.+.|. | .+.|+|+|||..+.......   ..      .+.|.|.....+|+|
T Consensus       247 ~~--~----~-~-~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g  318 (344)
T 1za6_B          247 TL--P----P-S-RDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGN  318 (344)
T ss_dssp             EE--C----C-C-GGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEEECCCEECTTSCEEEEEEEEECHHHHHTTC
T ss_pred             Ee--C----C-C-hHhccCCcEEEEEEEeeEECCCeEEEEEECCeECCCcEecceEECCCCcEEEEEEEEEChHHccCCC
Confidence            11  0    0 0 112346679999999996 4 35899999999886543211   11      235777777778899


Q ss_pred             EEEEEEEcCCCc
Q psy14896        738 EYICRASNDRSA  749 (813)
Q Consensus       738 ~Y~C~a~N~~G~  749 (813)
                      .|+|.|.|....
T Consensus       319 ~YtC~a~~~~l~  330 (344)
T 1za6_B          319 VFSCSVMHEALH  330 (344)
T ss_dssp             EEEEEEECTTST
T ss_pred             eEEEEEEcCCCC
Confidence            999999997543

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.92  E-value=7.1e-25  Score=210.65  Aligned_cols=185  Identities=17%  Similarity=0.213  Sum_probs=145.8

Q ss_pred             cccccccCCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEe--eCc--cEEEEeecccCCeeEEEEE
Q psy14896        568 IGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVS--YDG--ALYFSALEQIDAGNYSCNV  643 (813)
Q Consensus       568 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~--~~~--~L~i~~~~~~d~G~Y~C~a  643 (813)
                      +|.+...+....+.+|+.++|.|.+ .+.|.+.+.|+|++.++.. ...++.+.  .++  +|.|.+++.+|+|.|+|.|
T Consensus         4 ~P~~~~~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (197)
T 2j8h_A            4 APHFKEELRNLNVRYQSNATLVCKV-TGHPKPIVKWYRQGKEIIA-DGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRA   81 (197)
T ss_dssp             CCEEEECCCCEEEETTSCEEEEEEE-ECSSCCEEEEEETTEECCC-CSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEE
T ss_pred             CCEEEEcCCccEEcCCCEEEEEEEE-eecCCCEEEEEECCEECcc-CCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEE
Confidence            4556556667788999999999999 6889999999999976433 23344443  234  7999999999999999999


Q ss_pred             EeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceee---
Q psy14896        644 QSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE---  720 (813)
Q Consensus       644 ~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~---  720 (813)
                      .|..|..   ...+.|.|..+|.+..   |..........+.+|+.++|.|.+.|.|.|.|+|+|+|..+..+.++.   
T Consensus        82 ~n~~g~~---~~~~~l~V~~~p~~~~---~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~  155 (197)
T 2j8h_A           82 TNQGGSV---SGTASLEVEVPAKIHL---PKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIV  155 (197)
T ss_dssp             EETTEEE---EEEEEEEEEEEEEECC---SSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEE
T ss_pred             EECCCce---eEEEEEEEcCCCcCCC---CccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEE
Confidence            9988764   3346788877665432   222222233567889999999999999999999999999987665443   


Q ss_pred             -ecceEEEECC-CCCCCCEEEEEEEEcCCCceEEEEEEEEEc
Q psy14896        721 -NFNRILTIPN-VKVEDQGEYICRASNDRSALESSVTISIQA  760 (813)
Q Consensus       721 -~~~~~L~i~~-v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  760 (813)
                       .....|.|.+ +..+|+|.|+|.|.|..|..+.++.|.|.+
T Consensus       156 ~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~d  197 (197)
T 2j8h_A          156 TRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD  197 (197)
T ss_dssp             CSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             cCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEeC
Confidence             2356899999 999999999999999999999999999863

>2py2_A Antifreeze protein type II; type II antifreeze protein; 1.70A {Clupea harengus}

Probab=99.92  E-value=6.2e-25  Score=195.23  Aligned_cols=128  Identities=16%  Similarity=0.288  Sum_probs=110.9

Q ss_pred             CCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEc
Q psy14896         27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNE  106 (813)
Q Consensus        27 ~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~  106 (813)
                      ..||.||..|+++||+|+... ++|.+|+..|+.+||+||+|+|++|++||.+++....  ..+||||.+...++.|.|+
T Consensus         2 ~~Cp~gw~~~~~~CY~~~~~~-~~w~~A~~~C~~~g~~La~i~s~~e~~~l~~~~~~~~--~~~WIGl~~~~~~~~w~W~   78 (136)
T 2py2_A            2 DECPTDWKMFNGRCFLFNPLQ-LHWADAQESCMKEGANLASIHSLEESTFVKELTSADL--IPSWIGGTDCQVSTRWFWM   78 (136)
T ss_dssp             --CCTTCEEETTEEEEEEEEE-ECHHHHHHHHHTTTCEECCCCSHHHHHHHHTTSTTTT--CCEEEEEECCSSTTCCEET
T ss_pred             CCCCcCceecCCEEEEEECCC-cCHHHHHHHHhhCCCEEeeeCCHHHHHHHHHHHHcCC--CCEeEeeEcCCCCCceEeC
Confidence            369999999999999999985 9999999999999999999999999999999874421  6899999998889999999


Q ss_pred             CCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeecc
Q psy14896        107 DGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEASI  161 (813)
Q Consensus       107 dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~~  161 (813)
                      ||++++| .+|..++|++...++|+.|.....   ..|.+..|.....|+|+...
T Consensus        79 dG~~~~y-~~W~~geP~~~~~~~Cv~~~~~~~---~~W~d~~C~~~~~fIC~~~~  129 (136)
T 2py2_A           79 DSTSMDY-ADWCAAQPDTTLTECCIQMNVGIG---KCWNDTPCTHLHSSICAKPL  129 (136)
T ss_dssp             TCCCCCC-CCBCTTCCCCCGGGCEEEEEETTT---TEEEEECTTSCEEEEEEEEC
T ss_pred             CCCCccc-CCCCCCCCCCCCCCCCeEEccCCC---CeEcCCCCCCCccEEeeECc
Confidence            9999987 677777998766689999976532   34559999999999999953

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.92  E-value=7.6e-25  Score=210.79  Aligned_cols=175  Identities=14%  Similarity=0.145  Sum_probs=127.4

Q ss_pred             CceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeC---c--cEEEEeecccCCeeEEEEEEeeecCcc
Q psy14896        577 PEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD---G--ALYFSALEQIDAGNYSCNVQSKVSDTG  651 (813)
Q Consensus       577 ~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~---~--~L~i~~~~~~d~G~Y~C~a~n~~g~~~  651 (813)
                      ...+.+|+.+.|.|.+..+.|.|.|+|+|||.++.  .+.++.+..+   +  +|.|.+++.+|+|.|+|.|.|  |.+.
T Consensus        11 ~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~--~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N--g~a~   86 (207)
T 3rbs_A           11 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIF--EGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD--GKAT   86 (207)
T ss_dssp             EEEECGGGCEEEEEECSCCCSCCEEEEEETTEEEC--SSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE--TTEE
T ss_pred             ceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECc--cCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC--CCeE
Confidence            35577899999999996678999999999998743  3334433333   3  599999999999999999999  4332


Q ss_pred             ccCceeeEEEccCCC--------cc-----ccccCCCCCCCCCcCCCCCCeEEEEEEecCC-CCCeEEEEeCCcccCCCc
Q psy14896        652 RNGPFFPLKVFPHSN--------FQ-----QLKFPNNFPKTFPEAPKAGDKVRLECVAFGY-PVPSYNWTRRGSPLPRNA  717 (813)
Q Consensus       652 ~~~~~~~l~v~~~p~--------~~-----~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~-P~p~i~W~k~g~~l~~~~  717 (813)
                      ..   ..+.+.....        ..     ....|.+...+ ...+.+|++++|.|.+.|. |.|.|+|+|||.+|..+.
T Consensus        87 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~~  162 (207)
T 3rbs_A           87 NH---STVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDE  162 (207)
T ss_dssp             EE---EEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCCC
T ss_pred             EE---EEEEEEccchhhhcccccccccccccCCCCceEecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCCCC
Confidence            21   2222110000        00     00011111111 2567899999999999999 999999999999997765


Q ss_pred             eee--ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896        718 YFE--NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ  759 (813)
Q Consensus       718 ~~~--~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  759 (813)
                      ++.  ....+|.|.+++.+|+|.|+|+|.|.+|.+++++.|+++
T Consensus       163 ~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~~  206 (207)
T 3rbs_A          163 KHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE  206 (207)
T ss_dssp             CCCCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECCC
T ss_pred             ceEcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEecC
Confidence            543  234579999999999999999999999999999998764

>3vpp_A C-type lectin domain family 9 member A; dendritic cell, C-type lectin-like domain, membrane, immune; 1.64A {Homo sapiens}

Probab=99.92  E-value=8.4e-25  Score=193.90  Aligned_cols=126  Identities=20%  Similarity=0.295  Sum_probs=104.6

Q ss_pred             cCCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEE
Q psy14896         26 ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVN  105 (813)
Q Consensus        26 ~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W  105 (813)
                      |..||.||..|+++||+|+... ++|.+|+..|+.+||+||+|++++|++||..++........+||||.+...++.|.|
T Consensus         1 c~~Cp~gw~~~~~~CY~~~~~~-~~w~~A~~~C~~~g~~La~i~s~~e~~~l~~~~~~~~~~~~~WIGl~~~~~~~~w~W   79 (132)
T 3vpp_A            1 SSPCPNNWIQNRESCYYVSEIW-SIWHTSQENCLKEGSTLLQIESKEEMDFITGSLRKIKGSYDYWVGLSQDGHSGRWLW   79 (132)
T ss_dssp             -CCSCTTCEEETTEEEEECSSC-BCHHHHHHHHHHTTCEECCCCSHHHHHHHHHHHTTSSSCCEEEEEEEECTTTCCEEE
T ss_pred             CCCCCccceEeCCEEEEEECCc-cCHHHHHHHHHhcCCEEeEECCHHHHHHHHHHHhccCCCccEEEEecccCCCCceEe
Confidence            4579999999999999999995 999999999999999999999999999999988554445689999999988899999


Q ss_pred             cCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        106 EDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       106 ~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      .||+++.+  .+|..+|++...++|+.|..  +  .  |.+..|.....|+|++.
T Consensus        80 ~dg~~~~~--~~w~~~~p~~~~~~C~~~~~--~--~--w~~~~C~~~~~fiCe~~  126 (132)
T 3vpp_A           80 QDGSSPSP--GLLPAERSQSANQVCGYVKS--N--S--LLSSNCDTWKYFICEKY  126 (132)
T ss_dssp             TTSCCCCT--TSCCCC------CEEEEEET--T--E--EEEEESSSCBEEEEEEE
T ss_pred             cCCCcCCh--hhcccCCCCCCCCceEEEEC--C--e--EeccCCCCCceEECCcc
Confidence            99999987  45666444456789999853  2  3  45999999999999995

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.91  E-value=1.3e-24  Score=207.32  Aligned_cols=184  Identities=21%  Similarity=0.317  Sum_probs=144.6

Q ss_pred             ccccccCCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEEEEeeec
Q psy14896        569 GEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVS  648 (813)
Q Consensus       569 p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  648 (813)
                      |.|...+.+..+.+|+.++|.|.+ .+.|.+.+.|+|++..+......++....+++|.|.+++.+|+|.|+|.|.|..+
T Consensus         3 ~~~~~~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~   81 (189)
T 2v5t_A            3 LTFREVVSPQEFKQGEDAEVVCRV-SSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEAR   81 (189)
T ss_dssp             CEEEECCSSEEEETTSCEEECCEE-ECSSCCEEEEEC-----CBCCCTTEEECTTSCEEETTCCGGGCEEEEEEEEETTT
T ss_pred             ceeeccCCCEEEeCCCcEEEEEEE-cCCCCCEEEEEECCccceeccCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEcCC
Confidence            445555667788999999999999 6889999999999987655567788888889999999999999999999999875


Q ss_pred             CccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCcee--eecceEE
Q psy14896        649 DTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF--ENFNRIL  726 (813)
Q Consensus       649 ~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~--~~~~~~L  726 (813)
                      ... ....+.+.|..+|.+...      .......+.+|+.++|.|.+.|.|.|.|+|+|+|..+..+.++  ......|
T Consensus        82 ~~~-~~~~~~l~v~~~p~~~~~------~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~L  154 (189)
T 2v5t_A           82 GEI-DFRDIIVIVNVPPAISMP------QKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTEL  154 (189)
T ss_dssp             TEE-EEEEEEEEEEEEEEEECS------CCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEETTTTEE
T ss_pred             Cce-EEEEEEEEecCCCCcccc------cccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEecCCCEE
Confidence            432 223456777766654321      1111246789999999999999999999999999998776544  3345789


Q ss_pred             EECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEc
Q psy14896        727 TIPNVKVEDQGEYICRASNDRSALESSVTISIQA  760 (813)
Q Consensus       727 ~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  760 (813)
                      +|.++..+|+|.|+|.|.|..|..+.++.|.|..
T Consensus       155 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~v  188 (189)
T 2v5t_A          155 TVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV  188 (189)
T ss_dssp             EECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEcCCChhhCeeEEEEEEeCCCceeEEEEEEEEe
Confidence            9999999999999999999999999999998863

>3bx4_B Aggretin beta chain; toxin; 1.70A {Agkistrodon rhodostoma} PDB: 2vrp_B

Probab=99.91  E-value=5.3e-25  Score=198.83  Aligned_cols=120  Identities=23%  Similarity=0.369  Sum_probs=104.4

Q ss_pred             CCchhhhccCCeEEEEecCCcCCHHHHHhHccc--CCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEE
Q psy14896         28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS--LDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVN  105 (813)
Q Consensus        28 ~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~--~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W  105 (813)
                      .||.||..|+++||+++.+. ++|.+|+..|+.  .||+||+|+|++|++||.+++........+||||.+...++.|.|
T Consensus        24 ~Cp~gw~~~~~~CY~~~~~~-~~w~~A~~~C~~~~~g~~La~i~s~~e~~~l~~~~~~~~~~~~~WIGl~~~~~~~~~~W  102 (146)
T 3bx4_B           24 DCPSGWSSYEGHCYKPFNEP-KNWADAERFCKLQPKHSHLVSFQSAEEADFVVKLTRPRLKANLVWMGLSNIWHGCNWQW  102 (146)
T ss_dssp             -CCTTCEEETTEEEEEEEEE-ECHHHHHHHHHHSSSCCEECCCSSHHHHHHHHHHHTTTTTTSEEECSCCCTTSSSCEEE
T ss_pred             CCCcCcEeeCCEEEEEECCC-cCHHHHHHHHhccCCCceEeccCCHHHHHHHHHHHhhcCCCCCEEEecccCCCCCceEe
Confidence            79999999999999999984 999999999999  599999999999999999998543235689999999888899999


Q ss_pred             cCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        106 EDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       106 ~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      .||++++| .+|. ++|      +|+.|....+    .|.+..|.....|+|+.+
T Consensus       103 ~dg~~~~~-~~W~-g~P------~C~~~~~~~g----~w~~~~C~~~~~~ICe~~  145 (146)
T 3bx4_B          103 SDGARLNY-KDWQ-EQS------ECLAFRGVHT----EWLNMDCSSTCSFVCKFK  145 (146)
T ss_dssp             TTCCCCCS-CCBC-SCC------EEEEEETTCC----CEEEEETTSCEEEEEEEE
T ss_pred             CCCCcccc-cCcC-CCC------CceEEECCCC----eEecCCCCCCcceEEeec
Confidence            99999988 6777 777      8999876533    445999999999999974

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.91  E-value=2e-24  Score=207.59  Aligned_cols=185  Identities=20%  Similarity=0.268  Sum_probs=147.5

Q ss_pred             eecccccccCCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCc---cEEEEeecccCCeeEEEE
Q psy14896        566 GFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDG---ALYFSALEQIDAGNYSCN  642 (813)
Q Consensus       566 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~  642 (813)
                      ..+|.+...+....+.+|+.++|.|.+ .+.|.+.+.|+|++.+  +....++.+..++   +|.|.+++.+|+|.|+|.
T Consensus         5 ~~~P~~~~~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~--~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   81 (197)
T 3lcy_A            5 GEAPGIRKEMKDVTTKLGEAAQLSCQI-VGRPLPDIKWYRFGKE--LIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCI   81 (197)
T ss_dssp             CEEEEEEECCCCEEEETTSEEEEEEEE-EEESCCEEEEEETTEE--ECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEE
T ss_pred             CCCCcccccCCceEEeCCCcEEEEEEE-ecCCCCEEEEEECCEE--CCCCccEEEEeCCCEEEEEEecCCccCCEEEEEE
Confidence            455666666677788899999999999 6889999999999976  4445666666666   699999999999999999


Q ss_pred             EEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeee-
Q psy14896        643 VQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFEN-  721 (813)
Q Consensus       643 a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~-  721 (813)
                      |.|..|....   .+.|.|..+|.....     .+......+.+|+.+.|.|.+.|.|.|.++|+|+|..+..+.++.. 
T Consensus        82 ~~n~~~~~~~---~~~l~v~~~p~~~~~-----~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~  153 (197)
T 3lcy_A           82 ATNEVGEVET---SSKLLLQATPQFHPG-----YPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIE  153 (197)
T ss_dssp             EECSSCEEEE---EEEEEEEEEEEECTT-----SCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEE
T ss_pred             EECCCCceeE---EEEEEEEcCCCCCCC-----ccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEE
Confidence            9998875433   366777766644321     1112224568899999999999999999999999999977654432 


Q ss_pred             ---cceEEEECCCCC-CCCEEEEEEEEcCCCceEEEEEEEEEcC
Q psy14896        722 ---FNRILTIPNVKV-EDQGEYICRASNDRSALESSVTISIQAE  761 (813)
Q Consensus       722 ---~~~~L~i~~v~~-~d~G~Y~C~a~N~~G~~~~~~~l~V~~~  761 (813)
                         ....|.|.++.. +|+|.|+|.|.|..|..+.++.|.|.++
T Consensus       154 ~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~k  197 (197)
T 3lcy_A          154 NTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQDK  197 (197)
T ss_dssp             ECSSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEECC
T ss_pred             EcCCEEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEecC
Confidence               226899999995 8999999999999999999999999753

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.91  E-value=1e-24  Score=208.52  Aligned_cols=185  Identities=22%  Similarity=0.297  Sum_probs=145.6

Q ss_pred             eecccccccCCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCc-cEEEEeecccCCeeEEEEEE
Q psy14896        566 GFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDG-ALYFSALEQIDAGNYSCNVQ  644 (813)
Q Consensus       566 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~-~L~i~~~~~~d~G~Y~C~a~  644 (813)
                      ..+|.+........+.+|+.++|.|.+ .+.|.+.+.|+|++.++.. ...++.+..++ +|.|.+++.+|+|.|+|.+.
T Consensus         5 ~~~P~i~~~~~~~~~~~G~~v~l~C~~-~~~p~~~i~W~~~~~~~~~-~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (192)
T 2iep_A            5 PKAPVITTPLETVDALVEEVATFMCAV-ESYPQPEISWTRNKILIKL-FDTRYSIRENGQLLTILSVEDSDDGIYCCTAN   82 (192)
T ss_dssp             CEEEEESSCCCEEEEETTSCEEEECCE-EEESCCEEEEEETTEECCT-TCTTEEEEGGGTEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCceeecCccceeeeCCCcEEEEeeC-CCCCCCeEEEEECCEEccc-cCccEEEcCCccEEEEcCCCcccCeEEEEEEE
Confidence            345556555666678899999999999 6889999999999976432 34566666555 59999999999999999999


Q ss_pred             eeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceee-ecc
Q psy14896        645 SKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE-NFN  723 (813)
Q Consensus       645 n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~-~~~  723 (813)
                      |..|....  ..+.|.|..+|.+...        .....+.+|+.++|.|.+.|.|.|.++|+|+|..+..+.++. ...
T Consensus        83 ~~~~~~~~--~~~~l~v~~~p~~~~~--------~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~  152 (192)
T 2iep_A           83 NGVGGAVE--SCGALQVKMKPKITRP--------PINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLES  152 (192)
T ss_dssp             CSSSCCEE--EEEEEEEEEEEEEEEC--------CCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEECTT
T ss_pred             cCCCceeE--eEEEEEEEeCCccccC--------CcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEecC
Confidence            98875322  2456777776654431        123567899999999999999999999999999987765442 345


Q ss_pred             eEEEECCCCCCCCEEEEEEEEcCCCce-EEEEEEEEEcCC
Q psy14896        724 RILTIPNVKVEDQGEYICRASNDRSAL-ESSVTISIQAEP  762 (813)
Q Consensus       724 ~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~~~P  762 (813)
                      +.|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..||
T Consensus       153 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~pp  192 (192)
T 2iep_A          153 GSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVFA  192 (192)
T ss_dssp             SCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             CcEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEEeCC
Confidence            689999999999999999999999987 557999999876

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.91  E-value=1.9e-24  Score=225.25  Aligned_cols=216  Identities=17%  Similarity=0.225  Sum_probs=129.3

Q ss_pred             ccEEEEeeeccC-C-CCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeee
Q psy14896        210 NDITLSCYAGGY-P-NPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISES  287 (813)
Q Consensus       210 ~~v~l~C~~~g~-P-~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~  287 (813)
                      ++++|.|.+.|. | .+.|+|+|||..+............+..+.. ...|.|... +.+|+|.|+|+|.|..+.. ...
T Consensus        25 ~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~-~s~l~i~~~-~~~d~g~Y~C~a~n~~~~~-~~~  101 (323)
T 2wqr_A           25 PTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELAST-QSELTLSQK-HWLSDRTYTCQVTYQGHTF-EDS  101 (323)
T ss_dssp             SEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEE-EEEEEEEHH-HHHTTCCEEEEEEETTEEE-EEE
T ss_pred             CcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEE-EEEEEEcHH-HcCCCCcEEEEEEeCCCCc-cee
Confidence            579999999885 4 4799999999877432110000000112211 123555543 5679999999999988764 333


Q ss_pred             eEEeee---eeccccc-CCCCceeecCCCeEEEecCCCCCCcc---eEEEeeccccccccCCccEEE-c------cCccE
Q psy14896        288 VQLAFG---FIGEFNL-KRAPEIGNQNWGKAMFCDPPTNYPGV---NYYWARDYFPNFVEEDKRVFV-S------YDGAL  353 (813)
Q Consensus       288 ~~l~v~---~~~~~~~-~~~~~~~~~~~~~~l~C~~~~~~p~~---~v~W~k~~~~~~~~~~~~~~~-~------~~~~L  353 (813)
                      +.+.+.   ..+.+.+ .+....+.+|+.++|.|.+.+..|.+   .|+|+|++... +........ .      ..+.|
T Consensus       102 ~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~-~~~~~~~~~~~~~g~~~~~~~L  180 (323)
T 2wqr_A          102 TKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKP-VNHSTRKEEKQRNGTLTVTSTL  180 (323)
T ss_dssp             ECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCC-CCCCCCEEEECTTSCEEEEEEE
T ss_pred             eecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcc-cccccCCCccCCCCCEEEEEEE
Confidence            332111   1122222 22333567899999999975555666   99999975332 211111111 1      23369


Q ss_pred             EEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEcc------CCcccccccCCCCCCCCCcCCCCCCcEEEEEEEeec-
Q psy14896        354 YFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFP------HSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGY-  426 (813)
Q Consensus       354 ~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~------~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~~g~-  426 (813)
                      .|.++..+|+|.|+|.|.|..+..     ...+.|..      +|.+. +..+.       ....+|+.++|.|.+.|. 
T Consensus       181 ~I~~~~~~D~G~Y~C~a~n~~~~~-----~~~~~v~~~~~~~~~P~v~-~~~~~-------~~~~~g~~~~l~C~~~g~~  247 (323)
T 2wqr_A          181 PVGTRDWIEGETYQCRVTHPHLPR-----ALMRSTTKTSGPRAAPEVY-AFATP-------EWPGSRDKRTLACLIQNFM  247 (323)
T ss_dssp             ECCHHHHHTTCCEEEEEECTTSSS-----CEEEEECCCCSCCBCCEEE-EEECC-------CCTTCTTEEEEEEEEEEEB
T ss_pred             EECHHHccCCCCEEEEEECCCCCC-----CeeeEEEccCCCCCCCEEE-EeCCC-------hHHhcCCcEEEEEEeeeee
Confidence            999999999999999999876321     23444432      12111 11111       122339999999999884 


Q ss_pred             CCC-eeeEeecCCcCCC
Q psy14896        427 PVP-SYNWTRRGSPLPR  442 (813)
Q Consensus       427 p~p-~i~W~~~~~~l~~  442 (813)
                      |.+ .|.|+|+|.+|..
T Consensus       248 p~~~~v~W~k~g~~l~~  264 (323)
T 2wqr_A          248 PEDISVQWLHNEVQLPD  264 (323)
T ss_dssp             SSCCEEEEEETTEECCG
T ss_pred             CCCcEEEEEECCEECCC
Confidence            443 7999998887754

>1qdd_A Lithostathine; pancreatic stone inhibitor, metal binding protein; HET: SIA NDG GAL; 1.30A {Homo sapiens} SCOP: d.169.1.1 PDB: 1lit_A

Probab=99.91  E-value=4.9e-24  Score=192.33  Aligned_cols=132  Identities=18%  Similarity=0.298  Sum_probs=114.2

Q ss_pred             ccCCCchhhhccCCeEEEEecCCcCCHHHHHhHcccC-CCeEeeeCCHhHHHHHHHHhhhcC-CCCceEEEEeccCCCCC
Q psy14896         25 LELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSL-DSDLANVNDADEHGFIMYQLFWQD-PQRRKWYFGGTQQSPNL  102 (813)
Q Consensus        25 ~~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~-~~~L~~i~~~~e~~~i~~~~~~~~-~~~~~w~g~~~~~~~~~  102 (813)
                      ....||.||..|+++||+|+.. .++|.+|+..|+.+ ||+||+|+|++|++||.+++.... ....+||||.+...++.
T Consensus        10 ~~~~Cp~gw~~~~~~CY~~~~~-~~~w~~A~~~C~~~~gg~La~i~s~~e~~~l~~~~~~~~~~~~~~WIGl~~~~~~~~   88 (144)
T 1qdd_A           10 ARISCPEGTNAYRSYCYYFNED-RETWVDADLYCQNMNSGNLVSVLTQAEGAFVASLIKESGTDDFNVWIGLHDPKKNRA   88 (144)
T ss_dssp             GGTSCCTTCEEETTEEEEEEEE-EECHHHHHHHHHHTTSCEECCCCSHHHHHHHHHHHHHTTCCCSEEEEEEECTTSSSC
T ss_pred             CCCCCCCCceecCCEeEEEeCC-CcCHHHHHHHhhccCCceECccCCHHHHHHHHHHHHhcCCCCCCEEEeeEcCCCCCe
Confidence            3457999999999999999998 49999999999998 899999999999999999986542 34589999999888899


Q ss_pred             eEEcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        103 WVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       103 ~~W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      |.|+||++++| .+|..++|++...++|+.|....+  ...|.+..|.....|+|+..
T Consensus        89 ~~W~dg~~~~~-~~W~~~~P~~~~~~~Cv~~~~~~~--~~~W~d~~C~~~~~fICe~~  143 (144)
T 1qdd_A           89 WHWSSGSLVSY-KSWGIGAPSSVNPGYCVSLTSSTG--FQKWKDVPCEDKFSFVCKFK  143 (144)
T ss_dssp             CEETTCCCCCC-CCBCTTCSCSSSCCSEEEEEGGGT--TCSEEEECTTSCEEEEEEEE
T ss_pred             EEeCCCCCcCc-CccCCCCcCCCCCCCcEEEEecCC--CCeEeCCCCCCCceeeeeec
Confidence            99999999987 677777998766789999976543  24566999999999999974

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.91  E-value=3.5e-24  Score=208.36  Aligned_cols=192  Identities=19%  Similarity=0.283  Sum_probs=144.8

Q ss_pred             ecccccccCCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEe--eCc--cEEEEeecc-cCCeeEEE
Q psy14896        567 FIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVS--YDG--ALYFSALEQ-IDAGNYSC  641 (813)
Q Consensus       567 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~--~~~--~L~i~~~~~-~d~G~Y~C  641 (813)
                      .+|.+...+....+.+|+.++|.|.+ .+.|.+.|+|+|++.++. ....++.+.  .++  +|.|.+++. +|+|.|+|
T Consensus         5 ~pP~~~~~p~~~~v~~G~~v~l~C~~-~g~p~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C   82 (212)
T 2yd1_A            5 HPPEIIRKPQNQGVRVGGVASFYCAA-RGDPPPSIVWRKNGKKVS-GTQSRYTVLEQPGGISILRIEPVRAGRDDAPYEC   82 (212)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEE-ECSSCCEEEEEETTEECC-TTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEE
T ss_pred             CCCEEEcCCCceEEecCCEEEEEEEE-ccCCCCeEEEEECCEECC-CCcceeEEEEcCCCeEEEEEEecCCCCcCceEEE
Confidence            35666666677788999999999999 788999999999997643 233444443  233  699999999 99999999


Q ss_pred             EEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCC-ceee
Q psy14896        642 NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRN-AYFE  720 (813)
Q Consensus       642 ~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~-~~~~  720 (813)
                      .|.|..|..  ....+.|.|...+.... ..|..........+.+|+.++|.|.+.|.|.|.|+|+|+|..+... .++.
T Consensus        83 ~~~n~~g~~--~~~~~~l~V~~~~~~~~-~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~  159 (212)
T 2yd1_A           83 VAENGVGDA--VSADATLTIYEGDKTPA-GFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYS  159 (212)
T ss_dssp             EEECSSSCE--EEEEEEEEEECTTCSCT-TCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEE
T ss_pred             EEEeCCCCe--EEeeEEEEEecccCCCC-CCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEE
Confidence            999988752  23346788876543211 0011111222356788999999999999999999999999998753 3444


Q ss_pred             ecceEEEECCCCCCCCEEEEEEEEcCCCceEEE-EEEEEEcCCc
Q psy14896        721 NFNRILTIPNVKVEDQGEYICRASNDRSALESS-VTISIQAEPN  763 (813)
Q Consensus       721 ~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~-~~l~V~~~P~  763 (813)
                      ..++.|.|.+++.+|+|.|+|.|.|..|...+. +.|.|+.++.
T Consensus       160 ~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~~  203 (212)
T 2yd1_A          160 LKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRV  203 (212)
T ss_dssp             EETTEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---
T ss_pred             ccCCeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEeccc
Confidence            456799999999999999999999999998765 8999997654

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.91  E-value=2.7e-24  Score=206.01  Aligned_cols=184  Identities=19%  Similarity=0.201  Sum_probs=140.8

Q ss_pred             ecccccccCCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEe-eC--ccEEEEeecccCCeeEEEEE
Q psy14896        567 FIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVS-YD--GALYFSALEQIDAGNYSCNV  643 (813)
Q Consensus       567 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~-~~--~~L~i~~~~~~d~G~Y~C~a  643 (813)
                      .+|.+...+....+.+|+.++|.|.+ .+.|.+.+.|+|+|.++......++.+. .+  .+|.|.+++.+|+|.|+|.|
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   82 (194)
T 2a38_A            4 QAPTFTQPLQSVVVLEGSTATFEAHI-SGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKA   82 (194)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEE-EEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCeEEccCCceEEECCCEEEEEEEE-EecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEE
Confidence            35556666667788999999999999 7889999999999987544332233222 23  36999999999999999999


Q ss_pred             EeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeee--
Q psy14896        644 QSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFEN--  721 (813)
Q Consensus       644 ~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~--  721 (813)
                      .|..|....   .+.|.|...+....+..     ......+.+|+.++|.|.+.|.|.|.++|+|+|..+..+.++..  
T Consensus        83 ~n~~~~~~~---~~~l~v~~~~~~p~~~~-----~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~  154 (194)
T 2a38_A           83 TNGSGQATS---TAELLVKAETAPPNFVQ-----RLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQ  154 (194)
T ss_dssp             EETTEEEEE---EEEEEEECCCEEEEEEE-----CCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEE
T ss_pred             EcCCceEeE---EEEEEEccCCCCCEEEe-----CCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEEE
Confidence            998875433   35677763222111111     12235688999999999999999999999999999976654422  


Q ss_pred             --cceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896        722 --FNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ  759 (813)
Q Consensus       722 --~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  759 (813)
                        ...+|.|.+++.+|+|.|+|.|.|..|..+.++.|.|+
T Consensus       155 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  194 (194)
T 2a38_A          155 EGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ  194 (194)
T ss_dssp             ETTEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             cCCEEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEEC
Confidence              22379999999999999999999999999999999884

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.91  E-value=1.2e-23  Score=201.13  Aligned_cols=186  Identities=20%  Similarity=0.362  Sum_probs=151.0

Q ss_pred             CCCCCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEee--CCeEEEcCC
Q psy14896        186 IPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS--GGNLIINDP  263 (813)
Q Consensus       186 ~~~~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~--~~~l~i~~~  263 (813)
                      +..+|.|+..|.+..+.+|     ++++|.|.+.|.|.+.+.|+|+|..+.         ....++.+.  +.+|.|.+.
T Consensus         4 ~~~~P~i~~~~~~~~~~~G-----~~v~l~C~~~~~p~~~i~W~~~~~~~~---------~~~~~~~~~~~~~~L~i~~~   69 (192)
T 2iep_A            4 LPKAPVITTPLETVDALVE-----EVATFMCAVESYPQPEISWTRNKILIK---------LFDTRYSIRENGQLLTILSV   69 (192)
T ss_dssp             CCEEEEESSCCCEEEEETT-----SCEEEECCEEEESCCEEEEEETTEECC---------TTCTTEEEEGGGTEEEESSC
T ss_pred             cCCCceeecCccceeeeCC-----CcEEEEeeCCCCCCCeEEEEECCEEcc---------ccCccEEEcCCccEEEEcCC
Confidence            3456888888888888777     669999999999999999999997652         223344443  345777775


Q ss_pred             ccccCCeeEEEEeecCceeeEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCc
Q psy14896        264 RQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDK  343 (813)
Q Consensus       264 ~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~  343 (813)
                       +.+|+|.|+|.|.|..|...+..+.|.|..+|.+........+..|+.++|.|.+ .|.|.+.+.|++++..  +....
T Consensus        70 -~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~v~W~~~~~~--~~~~~  145 (192)
T 2iep_A           70 -EDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTT-MGNPKPSVSWIKGDSA--LRENS  145 (192)
T ss_dssp             -CGGGCEEEEEEEECSSSCCEEEEEEEEEEEEEEEEECCCCEEEETTSCEEECCEE-EEESCCEEEEEETTEE--CCCCS
T ss_pred             -CcccCeEEEEEEEcCCCceeEeEEEEEEEeCCccccCCcceEEeCCCcEEEEEEE-eccCCceEEEEeCCEE--ccCCC
Confidence             8999999999999998886577788898888887777777788899999999995 7789999999999987  44556


Q ss_pred             cEEEccCccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccC
Q psy14896        344 RVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPH  391 (813)
Q Consensus       344 ~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~  391 (813)
                      ++.+..+++|.|.++..+|+|.|+|.|.|..|..  .+..+.|.|..+
T Consensus       146 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~--~s~~~~l~V~~p  191 (192)
T 2iep_A          146 RIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTA--YSKLVKLEVEVF  191 (192)
T ss_dssp             SEEECTTSCEEESSCCGGGCEEEEEEEEETTEEE--ECCCEEEEEEC-
T ss_pred             cEEEecCCcEEEecCChhhCEEEEEEEEcCCCcE--EEEEEEEEEEeC
Confidence            7778888899999999999999999999998754  233477777654

>1gz2_A Ovocleidin-17, OC-17 ovocleidin; structural protein, CTLD, eggshell structural protein, phosphoprotein, sugar-binding protein, glycoprotein; HET: SEP; 1.5A {Gallus gallus} SCOP: d.169.1.1

Probab=99.90  E-value=4e-24  Score=192.56  Aligned_cols=130  Identities=20%  Similarity=0.221  Sum_probs=111.9

Q ss_pred             cCCCchhhhccCCeEEEEecCCcCCHHHHHhHccc--CCCeEeeeCCHhHHHHHHHHhhhcCC--------CCceEEEEe
Q psy14896         26 ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS--LDSDLANVNDADEHGFIMYQLFWQDP--------QRRKWYFGG   95 (813)
Q Consensus        26 ~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~--~~~~L~~i~~~~e~~~i~~~~~~~~~--------~~~~w~g~~   95 (813)
                      +..||.||..|+++||+|+... ++|.+|+..|+.  +||+||+|+|++|++||.+++.....        ...+||||.
T Consensus         2 ~~~Cp~gw~~~~~~Cy~~~~~~-~~w~~A~~~C~~~~~g~~La~i~s~~e~~~l~~~~~~~~~~~~~~~~~~~~~WIGl~   80 (142)
T 1gz2_A            2 PDGCGPGWVPTPGGCLGFFSRE-LSWSRAESFCRRWGPGSHLAAVRSAAELRLLAELLNASRGGDGSGEGADGRVWIGLH   80 (142)
T ss_dssp             --CCCTTCEEETTEEEEEEEEE-ECHHHHHHHHHTTCTTEEECCCCSHHHHHHHHHHHHCSSCCSSSCCCCSSCEEEEEE
T ss_pred             CCCCCcccEEcCCEEEEEcCCC-cCHHHHHHHHhccCCCceECccCCHHHHHHHHHHHHhcccccccccccCCCEEEEee
Confidence            3569999999999999999985 999999999999  99999999999999999999865432        568999999


Q ss_pred             ccCCCCCeEEcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896         96 TQQSPNLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus        96 ~~~~~~~~~W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      +...++.|.|+||++++| .+|..++|++. .++|+.|....+  ...|.+..|.....|+|++.
T Consensus        81 ~~~~~~~w~W~dg~~~~~-~~W~~~~P~~~-~~~C~~~~~~~~--~~~w~~~~C~~~~~fICe~~  141 (142)
T 1gz2_A           81 RPAGSRSWRWSDGTAPRF-ASWHRTAKARR-GGRCAALRDEEA--FTSWAARPCTERNAFVCKAA  141 (142)
T ss_dssp             CCTTCSSCEETTSCCCCC-CCBCSSSGGGC-SCSEEEECTTTT--SSCEEEECTTCCEEEEEEEE
T ss_pred             cCCCCCCcEeCCCCccCc-cCcCCCCCCCC-CCCCeEEecCCC--CCeEecCCCCCCceeEEeec
Confidence            988889999999999987 67777788765 789999966543  23566999999999999974

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.90  E-value=8.6e-24  Score=202.63  Aligned_cols=178  Identities=19%  Similarity=0.239  Sum_probs=140.4

Q ss_pred             cccccccCCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEE--ee--------CccEEEEeecccCCe
Q psy14896        568 IGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFV--SY--------DGALYFSALEQIDAG  637 (813)
Q Consensus       568 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~--~~--------~~~L~i~~~~~~d~G  637 (813)
                      +|.|...+....+.+|+.++|.|.+..+.|.+.|.|+|+|.++......++.+  ..        .++|.|.+++.+|+|
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G   81 (195)
T 2c5d_C            2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG   81 (195)
T ss_dssp             CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCE
T ss_pred             CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCc
Confidence            35566667778889999999999993288999999999998644332223333  23        357999999999999


Q ss_pred             eEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCC-eEEEEeCCcccCCC
Q psy14896        638 NYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVP-SYNWTRRGSPLPRN  716 (813)
Q Consensus       638 ~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p-~i~W~k~g~~l~~~  716 (813)
                      .|+|.|.|..|...  ...+.|.|..+|.+..        .+....+.+|+.++|.|.+.|.|.| .|+|+|+|..+...
T Consensus        82 ~Y~C~~~~~~~~~~--~~~~~l~V~~~p~~~~--------~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~  151 (195)
T 2c5d_C           82 QYQCLVFLGHQTFV--SQPGYVGLEGLPYFLE--------EPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATA  151 (195)
T ss_dssp             EEEEEEEETTEEEE--CCCEEEEECCSCEEEE--------CCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSS
T ss_pred             EEEEEEEeCCCcee--cccEEEEEecCCeEEc--------CCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCC
Confidence            99999999776432  3347788888875533        1122567899999999999999999 99999999998766


Q ss_pred             ceeeecceEEEECCCCCCCCEEEEEEEEcCCCceE-EEEEEEE
Q psy14896        717 AYFENFNRILTIPNVKVEDQGEYICRASNDRSALE-SSVTISI  758 (813)
Q Consensus       717 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~-~~~~l~V  758 (813)
                      ... ....+|.|.+++  |+|.|+|.|.|..|... ..+.|.|
T Consensus       152 ~~~-~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          152 PGH-GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             TTS-SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CCc-CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence            543 456789999987  89999999999999986 7999999

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.90  E-value=6.3e-24  Score=206.51  Aligned_cols=192  Identities=17%  Similarity=0.245  Sum_probs=138.4

Q ss_pred             eecccccccCCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEE-ee---CccEEEEee-cccCCeeEE
Q psy14896        566 GFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFV-SY---DGALYFSAL-EQIDAGNYS  640 (813)
Q Consensus       566 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~-~~---~~~L~i~~~-~~~d~G~Y~  640 (813)
                      ..+|.+...+....+.+|+.++|.|.+ .|.|.+.|.|+|++.++.  ....... ..   ...|.|.++ +.+|+|.|+
T Consensus         4 ~~~P~~~~~p~~~~v~~G~~v~L~C~~-~g~p~~~v~W~k~~~~~~--~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~   80 (212)
T 2yd6_A            4 ETPPRFTRTPVDQTGVSGGVASFICQA-TGDPRPKIVWNKKGKKVS--NQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYE   80 (212)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEE-EEESCCEEEEEETTEECC--CTTEEEEEEGGGTEEEEEECSCCTTTTCEEEE
T ss_pred             CCCCeEEeCcceeEEecCCeEEEEEEE-eeCCCCEEEEEECCcCCC--CCceeEEEEcCCCceEEEEeccCCCCCCeEEE
Confidence            356666666777788999999999999 688999999999997643  2222222 11   235999999 599999999


Q ss_pred             EEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCc---
Q psy14896        641 CNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA---  717 (813)
Q Consensus       641 C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~---  717 (813)
                      |.|.|..|...   ..+.|.|...+.... ..|.....+....+.+|+.++|.|.+.|.|.|.|+|+|+|..+....   
T Consensus        81 C~a~n~~g~~~---~~~~l~V~~~~~~~~-~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~  156 (212)
T 2yd6_A           81 CVASNNVGEIS---VSTRLTVLREDQIPR-GFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNG  156 (212)
T ss_dssp             EEEEETTEEEE---EEEEEEEECGGGCCT-TCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------C
T ss_pred             EEEEcCCCcEE---EEEEEEEeccCccCC-CcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCc
Confidence            99999887633   346777776532210 00111111223467889999999999999999999999999887542   


Q ss_pred             eee----ecceEEEECCCCCCCCEEEEEEEEcCCCceE-EEEEEEEEcCCcc
Q psy14896        718 YFE----NFNRILTIPNVKVEDQGEYICRASNDRSALE-SSVTISIQAEPNF  764 (813)
Q Consensus       718 ~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~-~~~~l~V~~~P~~  764 (813)
                      ++.    ...+.|.|.+++.+|+|.|+|.|.|.+|... ..+.|.|..+|.+
T Consensus       157 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~~~~~  208 (212)
T 2yd6_A          157 RIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKHH  208 (212)
T ss_dssp             CEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC----
T ss_pred             eEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEecccc
Confidence            221    2247899999999999999999999999864 5789999888765

>1uv0_A Pancreatitis-associated protein 1; lectin, C-type, secreted, inflammatory response, acute phase; 1.78A {Homo sapiens} SCOP: d.169.1.1 PDB: 2go0_A

Probab=99.90  E-value=1.2e-23  Score=191.09  Aligned_cols=132  Identities=18%  Similarity=0.220  Sum_probs=113.1

Q ss_pred             ccCCCchhhhccCCeEEEEecCCcCCHHHHHhHcccC-CCeEeeeCCHhHHHHHHHHhhhcC-CCCceEEEEeccCCCCC
Q psy14896         25 LELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSL-DSDLANVNDADEHGFIMYQLFWQD-PQRRKWYFGGTQQSPNL  102 (813)
Q Consensus        25 ~~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~-~~~L~~i~~~~e~~~i~~~~~~~~-~~~~~w~g~~~~~~~~~  102 (813)
                      ....||.||..|+++||+|+.. .++|.+|+..|+.+ ||+||+|+|++|++||..++.... ....+||||.+...++.
T Consensus        10 ~~~~Cp~gw~~~~~~CY~~~~~-~~~w~~A~~~C~~~~g~~La~i~s~~e~~~l~~~~~~~~~~~~~~WiGl~~~~~~~~   88 (149)
T 1uv0_A           10 ARIRCPKGSKAYGSHCYALFLS-PKSWTDADLACQKRPSGNLVSVLSGAEGSFVSSLVKSIGNSYSYVWIGLHDPTQGTE   88 (149)
T ss_dssp             CCCCCCTTCEEETTEEEEEEEE-EECHHHHHHHHTTSTTCEECCCCSHHHHHHHHHHHTTSCTTCCEEEEEEECTTTTCC
T ss_pred             CCCCCCccccccCCEEEEEECC-CCCHHHHHHHhhcCCCccEeEeCCHHHHHHHHHHHHhhccCCCCEEEeeEccCCCCc
Confidence            3457999999999999999998 49999999999998 899999999999999999985432 24579999999887776


Q ss_pred             -----eEEcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        103 -----WVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       103 -----~~W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                           |.|.||++++| .+|..++|++...++|+.|....+  ...|.+..|.....|+|+..
T Consensus        89 ~~~~~w~W~dg~~~~~-~~W~~~~P~~~~~~~Cv~~~~~~~--~~~W~d~~C~~~~~fICe~~  148 (149)
T 1uv0_A           89 PNGEGWEWSSSDVMNY-FAWERNPSTISSPGHCASLSRSTA--FLRWKDYNCNVRLPYVCKFT  148 (149)
T ss_dssp             --CCCCEETTCCCCCC-CCBSSCGGGSSSCCSEEEEEGGGT--TCSEEEECTTSCEEEEEEEC
T ss_pred             cCCCccEECCCCccCc-cCcCCCCcCCCCCCCCEEEEcCCC--CCeEeCcCCCCCCceEEeec
Confidence                 99999999987 677777898766789999977643  24566999999999999974

>2kv3_A Regenerating islet-derived protein 4; GISP, C-type lectin, REG IV, disulfide bond, glycoPro lectin, secreted, sugar binding protein; NMR {Homo sapiens}

Probab=99.90  E-value=4.9e-24  Score=188.91  Aligned_cols=127  Identities=17%  Similarity=0.245  Sum_probs=110.0

Q ss_pred             CCchhhhccCCeEEEEecCCcCCHHHHHhHcccC--CCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEE
Q psy14896         28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSL--DSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVN  105 (813)
Q Consensus        28 ~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~--~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W  105 (813)
                      .||.||..|+++||+|+... ++|.+|+..|+.+  ||+||+|++++|++||.+++........+||||.+...++.|.|
T Consensus         2 ~Cp~gw~~~~~~CY~~~~~~-~tw~~A~~~C~~~~~g~~La~i~s~~e~~~l~~~~~~~~~~~~~WIGl~~~~~~~~~~W   80 (131)
T 2kv3_A            2 SCAPGWFYHKSNCYGYFRKL-RNWSDAELECQSYGNGAHLASILSLKEASTIAEYISGYQRSQSIWIGLHDPQKRQQWQW   80 (131)
T ss_dssp             CSCTTCCEETTEEEEEEEEE-ECHHHHHHHHHTTSSSCEECCCSSHHHHHHHHHHHTCTTSCCCCBCSEECSSSSSCCEE
T ss_pred             cCCcccEEcCCEeEEEECCC-CCHHHHHHHHhccCCCceEeeeCCHHHHHHHHHHHHhcCCCCCEEEeccCCCCCCCeEe
Confidence            59999999999999999984 9999999999999  99999999999999999998543224689999999888899999


Q ss_pred             cCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        106 EDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       106 ~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      +||++++| .+|..++|  ...++|+.|....+  .+.|.+..|.....|+|+..
T Consensus        81 ~dg~~~~~-~~W~~~~P--~~~~~C~~~~~~~~--~~~W~~~~C~~~~~~iCe~~  130 (131)
T 2kv3_A           81 IDGAMYLY-RSWSGKSM--GGNKHCAEMSSNNN--FLTWSSNECNKRQHFLCKYR  130 (131)
T ss_dssp             TTCCCCSS-CCCSSCCC--TTCTTEEEECTTCT--TCCEEEECTTCCEEEEEEEC
T ss_pred             CCcCcccc-cccCCCCC--CCCCCceEEECCCC--cCceecCCCCCCceEEEeeC
Confidence            99999987 67777788  45789999966543  23566999999999999974

>1tdq_B Aggrecan core protein; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: d.169.1.1

Probab=99.90  E-value=9e-24  Score=186.80  Aligned_cols=124  Identities=19%  Similarity=0.369  Sum_probs=108.0

Q ss_pred             cCCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEE
Q psy14896         26 ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVN  105 (813)
Q Consensus        26 ~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W  105 (813)
                      ...||.||..|+++||+|+... ++|.+|+..|+.+||+||+|++++|++||.+++     ...+||||.+...++.|.|
T Consensus         4 ~~~Cp~gw~~~~~~CY~~~~~~-~~w~~A~~~C~~~g~~La~i~s~~e~~~l~~~~-----~~~~WIGl~~~~~~~~~~W   77 (130)
T 1tdq_B            4 QEQCEEGWTKFQGHCYRHFPDR-ETWVDAERRCREQQSHLSSIVTPEEQEFVNKNA-----QDYQWIGLNDRTIEGDFRW   77 (130)
T ss_dssp             -CCCCTTCEEETTEEEEEEEEE-ECHHHHHHHHHHTTCEECCCCSHHHHHHHHHHH-----CSCEEEEEECSSSTTCCEE
T ss_pred             ccCCCcccEEeCCEEEEEECCC-CCHHHHHHHHHhcCCEEeeeCCHHHHHHHHhcc-----CCCEEEeeecCCCCCEEEe
Confidence            4569999999999999999984 999999999999999999999999999999986     2578999999888899999


Q ss_pred             cCCCCCCccccccCCCCCCc--ccCCeEEEEeeccccccceeeccCCCceeeeeee
Q psy14896        106 EDGTNLNELDAAFLPEPADN--VQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEA  159 (813)
Q Consensus       106 ~dgs~~~~~~~~~~~~p~~~--~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~  159 (813)
                      .||+++.| .+|..++|++.  ..++|+.|.....   ..|.+..|.....|+|++
T Consensus        78 ~dg~~~~~-~~W~~~~P~~~~~~~~~C~~~~~~~~---~~w~~~~C~~~~~fICe~  129 (130)
T 1tdq_B           78 SDGHSLQF-EKWRPNQPDNFFATGEDCVVMIWHER---GEWNDVPCNYQLPFTCKK  129 (130)
T ss_dssp             TTCCCCCC-CCBCTTCCCCCSTTTEEEEEEETTTT---TEEEEEETTSCEEEEEEE
T ss_pred             cCCCcCCc-cccCCCCCCCccCCCCCeEEEccCCC---CcccCcCCCCCeeeeeec
Confidence            99999997 67777799874  4689999975322   345599999999999987

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.90  E-value=2.3e-23  Score=200.81  Aligned_cols=185  Identities=32%  Similarity=0.563  Sum_probs=141.6

Q ss_pred             CCCceeccCCCceEEeCCCCCCCc-cEEEEccCCCCCcccCCCe-EEEeeCccEEEEeecccCCeeEEEEEEeeecCccc
Q psy14896        575 RAPEIGNQNWGKAMFCDPPTNYPG-VNYYWARDYFPNFVEEDKR-VFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGR  652 (813)
Q Consensus       575 ~~~~~~~~g~~~~l~C~~~~~~p~-~~v~W~k~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  652 (813)
                      .....+.+|+.++|.|.+..+.|. +.++|+|++.++......+ .....+++|.|.+++.+|+|.|+|.|.|..+....
T Consensus        15 ~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~   94 (201)
T 3s97_C           15 RPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSV   94 (201)
T ss_dssp             CCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGGGTEEE
T ss_pred             CceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecCCCcch
Confidence            455678899999999993378898 9999999998765444444 44446778999999999999999999998765544


Q ss_pred             cCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCC
Q psy14896        653 NGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVK  732 (813)
Q Consensus       653 ~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~  732 (813)
                      ....+.+.+......... .|..........+.+|+.++|.|.+.|.|.|.|+|+|++..+.....+......|.|.++.
T Consensus        95 ~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~L~i~~v~  173 (201)
T 3s97_C           95 FSKFIPLIPIPERTTKPY-PADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQ  173 (201)
T ss_dssp             ECCCEEEEEECCSSCCCE-EEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTCEEETTTTEEEECSCC
T ss_pred             hhcccceeeccccccCCC-CCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCceeecCCCCEEEEccCC
Confidence            333444444322111000 0000001113567899999999999999999999999999988776666667899999999


Q ss_pred             CCCCEEEEEEEEcCCCceEEEEEEEEEc
Q psy14896        733 VEDQGEYICRASNDRSALESSVTISIQA  760 (813)
Q Consensus       733 ~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  760 (813)
                      .+|+|.|+|.|.|..|..+.++.|.|++
T Consensus       174 ~~d~G~Y~C~a~n~~g~~~~~~~l~V~a  201 (201)
T 3s97_C          174 LEDEGIYECEAENIRGKDKHQARIYVQA  201 (201)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             hhhCEEEEEEEEecCCceeeeEEEEEeC
Confidence            9999999999999999999999999873

>2c6u_A CLEC1B protein; lectin, rhodocytin, aggretin, C-type lectin-like, platelets, thrombosis; 1.6A {Homo sapiens}

Probab=99.90  E-value=5e-24  Score=185.58  Aligned_cols=119  Identities=20%  Similarity=0.396  Sum_probs=105.9

Q ss_pred             CCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcC
Q psy14896         28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNED  107 (813)
Q Consensus        28 ~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~d  107 (813)
                      .||.||..|+++||+|+... ++|.+|+..|+.+||+||+|+|++|++||.+++.     ..+||||.+...++.|.|.|
T Consensus         2 ~Cp~gw~~~~~~CY~~~~~~-~~w~~A~~~C~~~g~~L~~i~s~~e~~~l~~~~~-----~~~WiGl~~~~~~~~~~W~d   75 (122)
T 2c6u_A            2 PCDTNWRYYGDSCYGFFRHN-LTWEESKQYCTDMNATLLKIDNRNIVEYIKARTH-----LIRWVGLSRQKSNEVWKWED   75 (122)
T ss_dssp             CSCTTEEEETTEEEEEEEEE-ECHHHHHHHHHHTTCEECCCCSHHHHHHHHTTCC-----SCEEEEEECSSTTSCCBCTT
T ss_pred             CCCccceEeCCEEEEEECCc-CCHHHHHHHHHhCCCeEeeECCHHHHHHHHHhhc-----CCEEEEeeecCCCCCeEeCC
Confidence            59999999999999999984 9999999999999999999999999999998863     36899999988899999999


Q ss_pred             CCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        108 GTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       108 gs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      |+++.|  +|..++|++.+.++|+.|.  .    ..|.+..|.....|+|++.
T Consensus        76 g~~~~~--~W~~~~P~~~~~~~C~~~~--~----g~w~~~~C~~~~~~ICe~~  120 (122)
T 2c6u_A           76 GSVISE--NMFEFLEDGKGNMNCAYFH--N----GKMHPTFCENKHYLMCERK  120 (122)
T ss_dssp             SCBCCG--GGGGGBCCCCTTCCEEEEE--T----TEEEEECTTSCEEEEEEEE
T ss_pred             CCccCc--CcccCCCCCCCCCCeeEEc--C----CeEEeccCCCCceEeeeec
Confidence            999987  7777799877678999993  2    2455999999999999984

>1tn3_A Tetranectin; plasminogen binding, kringle 4, C-type lectin, carbohydrate recognition domain; 2.00A {Homo sapiens} SCOP: d.169.1.1 PDB: 1rjh_A 3l9j_C

Probab=99.90  E-value=4.7e-24  Score=190.66  Aligned_cols=128  Identities=15%  Similarity=0.182  Sum_probs=110.3

Q ss_pred             CCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcC-CCCceEEEEeccCCCCCeEE
Q psy14896         27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQD-PQRRKWYFGGTQQSPNLWVN  105 (813)
Q Consensus        27 ~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~-~~~~~w~g~~~~~~~~~~~W  105 (813)
                      ..||.||. |+++||+|+... ++|.+|+..|+.+||+||+|+|++|++||.+++.... ....+||||.+...++.|.|
T Consensus         4 ~~Cp~gw~-~~~~CY~~~~~~-~~w~~A~~~C~~~g~~La~i~s~~e~~~l~~~~~~~~~~~~~~WIGl~~~~~~~~w~W   81 (137)
T 1tn3_A            4 TVCLKGTK-VHMKCFLAFTQT-KTFHEASEDCISRGGTLSTPQTGSENDALYEYLRQSVGNEAEIWLGLNDMAAEGTWVD   81 (137)
T ss_dssp             CEEEECSS-SSEEEEEEEEEE-ECHHHHHHHHHHTTCEECCCCSHHHHHHHHHHHHHHTCTTCEEEEEEEEEEETTEEEE
T ss_pred             CCCCCCeE-ECCEEEEEeCCC-CCHHHHHHHHHhcCCEEcccCCHHHHHHHHHHHHhhcCCCCCEEEeeEccCCCceEEe
Confidence            46999999 999999999984 9999999999999999999999999999999885432 24689999999888899999


Q ss_pred             cCCCCCCcccccc---CCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        106 EDGTNLNELDAAF---LPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       106 ~dgs~~~~~~~~~---~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      .||++++| .+|.   .++|++...++|+.|....   ...|.+..|.....|+|+..
T Consensus        82 ~dg~~~~~-~~W~~~~~g~P~~~~~~~Cv~~~~~~---~~~W~d~~C~~~~~fiCe~~  135 (137)
T 1tn3_A           82 MTGARIAY-KNWETEITAQPDGGKTENCAVLSGAA---NGKWFDKRCRDQLPYICQFG  135 (137)
T ss_dssp             TTSCBCSC-CCBCCTTTCSSCCGGGCCEEEEETTT---TTEEEEECTTSCEEEEEEEE
T ss_pred             CCcCCCcc-cccCcCCCCcCCCCCccCCcEEccCC---CCeEeCcCCCCCccceEeEe
Confidence            99999987 6777   6799876678999996532   23455999999999999984

>2ox9_A Collectin placenta 1; C-type lectin, sugar binding protein; HET: GAL NAG FUC; 1.95A {Mus musculus} PDB: 2ox8_A

Probab=99.90  E-value=1.5e-23  Score=187.77  Aligned_cols=124  Identities=23%  Similarity=0.400  Sum_probs=108.4

Q ss_pred             CCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEc
Q psy14896         27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNE  106 (813)
Q Consensus        27 ~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~  106 (813)
                      ..||.||..|+++||+|+... ++|.+|+..|+.+||+||+|+|++|++||.+++.   ....+||||.+...++.|.|.
T Consensus         3 ~~Cp~gw~~~~~~CY~~~~~~-~~w~~A~~~C~~~g~~La~i~s~~e~~~l~~~~~---~~~~~WIGl~~~~~~~~~~W~   78 (140)
T 2ox9_A            3 NGCPPHWKNFTDKCYYFSLEK-EIFEDAKLFCEDKSSHLVFINSREEQQWIKKHTV---GRESHWIGLTDSEQESEWKWL   78 (140)
T ss_dssp             -CCCTTCEEETTEEEEECSCC-BCHHHHHHHHHHTTCEECCCCSHHHHHHHHHTCC---SSSCEEEEEECSSSTTCCEET
T ss_pred             CCCCcCceEcCCEEEEEECCC-cCHHHHHHHHHhcCCEEeeeCCHHHHHHHHHHhc---CCCCEEeeeEeCCCCCceEeC
Confidence            469999999999999999884 9999999999999999999999999999999873   246899999998888999999


Q ss_pred             CCCCCCccccccCCCCCCc-----ccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        107 DGTNLNELDAAFLPEPADN-----VQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       107 dgs~~~~~~~~~~~~p~~~-----~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      ||+++.| .+|..++|++.     ..++|+.|...     ..|.+..|.....|+|++.
T Consensus        79 dg~~~~~-~~W~~~~P~~~~~~~~~~~~Cv~~~~~-----g~W~d~~C~~~~~fICe~~  131 (140)
T 2ox9_A           79 DGSPVDY-KNWKAGQPDNWGSGHGPGEDCAGLIYA-----GQWNDFQCDEINNFICEKE  131 (140)
T ss_dssp             TSCBCCS-CCBCTTCCCCTTTTTSSCCCEEEECGG-----GCEEEECTTSCBEEEEEEE
T ss_pred             CcCcCCc-cCcCCcCCCCcccCCCCCCCCceECCC-----CeEeccCCCCCceeEEeec
Confidence            9999987 67777799873     47899998542     3455999999999999995

>1ypq_A Oxidised low density lipoprotein (lectin-like) receptor 1; oxidized low density lipoprotein receptor, LOX-1, CTLD, C- type lectin like domain; 1.40A {Homo sapiens} SCOP: d.169.1.1 PDB: 1ypu_A 1yxk_A 3vlg_A 1ypo_A 1yxj_A

Probab=99.90  E-value=1.1e-23  Score=187.49  Aligned_cols=127  Identities=18%  Similarity=0.301  Sum_probs=108.8

Q ss_pred             ccCCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeE
Q psy14896         25 LELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWV  104 (813)
Q Consensus        25 ~~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~  104 (813)
                      .+..||.||..|+++||+|+... ++|.+|+..|+.+||+||+|+|++|++||.+++..  ....+||||.+...++.|.
T Consensus         5 ~~~~Cp~gw~~~~~~CY~~~~~~-~~w~~A~~~C~~~g~~La~i~s~~e~~~l~~~~~~--~~~~~WIGl~~~~~~~~w~   81 (135)
T 1ypq_A            5 CSAPCPQDWIWHGENCYLFSSGS-FNWEKSQEKCLSLDAKLLKINSTADLDFIQQAISY--SSFPFWMGLSRRNPSYPWL   81 (135)
T ss_dssp             CCCSSCTTSEEETTEEEEECSSC-BCHHHHHHHHHHTTCEECCCCSHHHHHHHHHHHTT--CCCCEEEEEEESSTTSCCE
T ss_pred             cCCcCCcccEEcCCEEEEEECCc-cCHHHHHHHHHhCCCEEeEeCCHHHHHHHHHHHhc--cCCCEEEeccccCCCCCeE
Confidence            45679999999999999999995 99999999999999999999999999999999853  2457999999998899999


Q ss_pred             EcCCCCCCccccccCCCCCCc-ccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        105 NEDGTNLNELDAAFLPEPADN-VQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       105 W~dgs~~~~~~~~~~~~p~~~-~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      |.||+++..+.+|..++|++. ..++|+.|..  +  .  |.+..|.....|+|++.
T Consensus        82 W~dg~~~~~~~~w~~g~P~~~~~~~~Cv~~~~--~--~--w~~~~C~~~~~fICe~~  132 (135)
T 1ypq_A           82 WEDGSPLMPHLFRVRGAVSQTYPSGTCAYIQR--G--A--VYAENCILAAFSICQKK  132 (135)
T ss_dssp             ETTSCBCCTTSCCEEESCSCCCTTCEEEEEET--T--E--EEEEETTSCBEEEEEEE
T ss_pred             eCCcCccCcccccccCCCCCCCCCCCeeEEeC--C--c--EEccCCCCCeeeEeeec
Confidence            999999964356666688874 3688998853  2  3  45999999999999985

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.90  E-value=5.2e-23  Score=200.97  Aligned_cols=180  Identities=28%  Similarity=0.521  Sum_probs=143.4

Q ss_pred             CCCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEE----EcCC
Q psy14896        188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLI----INDP  263 (813)
Q Consensus       188 ~~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~----i~~~  263 (813)
                      .+|.|+..|.+..+.+|     +++.|.|.+.|.|.+.|.|+|+|..+...      .....++...++.+.    |.+ 
T Consensus         8 ~~P~i~~~p~~~~v~~G-----~~v~L~C~~~g~p~~~v~W~~~g~~~~~~------~~~~~~~~~~~~~~~~~l~i~~-   75 (217)
T 2vr9_A            8 QSPRIIEHPTDLVVKKN-----EPATLNCKVEGKPEPTIEWFKDGEPVSTN------EKKSHRVQFKDGALFFYRTMQG-   75 (217)
T ss_dssp             CCCEEEECCCCEEECTT-----SCEEECCEEECSSCCEEEEEETTEECCCS------SSSSSEEECTTSCEEESSCCBS-
T ss_pred             CCCEEecCCCceEEeCC-----CcEEEEEEcCCCCCCeEEEEECCcCccCC------CccceeEEecCCceEEEEEecc-
Confidence            47999999999988887     67999999999999999999999876321      122334445566653    344 


Q ss_pred             ccccCCeeEEEEeecCceeeEeeeeEEeeeee-cccccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccc---
Q psy14896        264 RQVEDRGSYHCKASNKFGSIISESVQLAFGFI-GEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFV---  339 (813)
Q Consensus       264 ~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~-~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~---  339 (813)
                      ++.+|+|.|+|.|.|..|...+..+.|.|... +.+...+....+.+|+.++|.|.+..+.|.+.++|+|++.++..   
T Consensus        76 v~~~d~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~  155 (217)
T 2vr9_A           76 KKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKA  155 (217)
T ss_dssp             SSCBCCEEEEEEEEETTEEEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCC
T ss_pred             CCcccCceEEEEEecCCCccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccc
Confidence            58999999999999999987677788888764 44555566777889999999999768899999999999987542   


Q ss_pred             ---cCCccEEEccCccEEEeeeeecCCeeeEEEEeeeccccCC
Q psy14896        340 ---EEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGR  379 (813)
Q Consensus       340 ---~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~  379 (813)
                         ....++....+++|.|.++..+|+|.|+|.|.|..|....
T Consensus       156 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~  198 (217)
T 2vr9_A          156 MSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRES  198 (217)
T ss_dssp             C---CCCSEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEEC
T ss_pred             cccccCCcEEecCCCcEEEeeCCHHHCeEEEEEEEcccceecc
Confidence               2455666667789999999999999999999999986543

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.90  E-value=7.6e-24  Score=202.40  Aligned_cols=164  Identities=12%  Similarity=0.053  Sum_probs=117.5

Q ss_pred             ceeccCCCceEEeC---CCCCCCccEEEEccCCCCCccc---------------CCCeEEEee---CccEEEEeecccCC
Q psy14896        578 EIGNQNWGKAMFCD---PPTNYPGVNYYWARDYFPNFVE---------------EDKRVFVSY---DGALYFSALEQIDA  636 (813)
Q Consensus       578 ~~~~~g~~~~l~C~---~~~~~p~~~v~W~k~~~~~~~~---------------~~~~~~~~~---~~~L~i~~~~~~d~  636 (813)
                      ..+..|+.++|.|.   + .+.|.+.|+|+|+|.+....               ...++.+..   ..+|.|.+++.+|+
T Consensus         3 Vta~~Ge~v~L~C~~~~v-~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   81 (203)
T 4fa8_A            3 VTAFLGERVTLTSYWRRV-SLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   81 (203)
T ss_dssp             CEEETTCCEEEEEECSST-TCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             eEEEcCCCEEEEeeeecc-CCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence            45778999999994   5 68899999999988643110               011122221   23599999999999


Q ss_pred             eeEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCC-
Q psy14896        637 GNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPR-  715 (813)
Q Consensus       637 G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~-  715 (813)
                      |.|+|.|.|..|....   .+.|.|..+|.+..        .+....+.+|++++|.|.+.|.|.|.|+|++++..+.. 
T Consensus        82 G~Y~C~a~n~~g~~~~---~~~l~V~~p~~~~~--------~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~  150 (203)
T 4fa8_A           82 GNYLCRMKLGETEVTK---QEHLSVVKPLTLSV--------HSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAP  150 (203)
T ss_dssp             EEEEEEEEETTEEEEE---EEEEEEEEEEEEEE--------EEEECCSSCSCCEEEEEEEEEESCCEEEECCC-------
T ss_pred             eEEEEEEEcCCCcEEE---EEEEEecCCceeee--------cceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCc
Confidence            9999999998876533   47788887765432        12235688999999999999999999999987765432 


Q ss_pred             ---Cceee-ecc---eEEEECCCCCCCCEEEEEEEEcCCCceEEE
Q psy14896        716 ---NAYFE-NFN---RILTIPNVKVEDQGEYICRASNDRSALESS  753 (813)
Q Consensus       716 ---~~~~~-~~~---~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~  753 (813)
                         +.++. ..+   ..|.|.++..+|+|.|+|+|.|.+|++...
T Consensus       151 ~~~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~v  195 (203)
T 4fa8_A          151 TAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHGV  195 (203)
T ss_dssp             -----CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEEE
T ss_pred             ccccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEE
Confidence               22221 223   345667999999999999999999988753

>1jwi_B Platelet aggregation inducer; domain swapping, C-type lectin, toxin; 2.00A {Bitis arietans} SCOP: d.169.1.1 PDB: 1uex_B

Probab=99.90  E-value=1e-23  Score=184.70  Aligned_cols=121  Identities=21%  Similarity=0.210  Sum_probs=104.6

Q ss_pred             CCCchhhhccCCeEEEEecCCcCCHHHHHhHcc--cCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeE
Q psy14896         27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCK--SLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWV  104 (813)
Q Consensus        27 ~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~--~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~  104 (813)
                      ..||.||..|+++||+|+... ++|.+|+..|+  .+||+||+|+|++|++||.+++........+||||.+...++.|.
T Consensus         2 ~~Cp~gw~~~~~~CY~~~~~~-~tw~~A~~~C~~~~~g~~La~i~s~~e~~~l~~~~~~~~~~~~~WiGl~~~~~~~~~~   80 (125)
T 1jwi_B            2 EGCLPDWSSYKGHCYKVFKVE-KTWADAEKFCKELVNGGHLMSVNSREEGEFISKLALEKMRIVLVWIGLSHFWRICPLR   80 (125)
T ss_dssp             -CCCTTCEEETTEEEEEEEEE-ECHHHHHHHHHHHSTTCEECCCCSHHHHHHHHHHHHHTTCCCEEEEEEEECGGGSCEE
T ss_pred             CCCCCCCEecCCEEEEEECCC-cCHHHHHHHhhccCCCceECccCCHHHHHHHHHHHHhcCCCCCEEEeeecCCCCCceE
Confidence            369999999999999999985 99999999999  899999999999999999999865444568999999988889999


Q ss_pred             EcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        105 NEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       105 W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      |.||++++| .+|..++|       |+.|....    ..|.+..|.....|+|+..
T Consensus        81 W~dg~~~~~-~~W~~g~p-------C~~~~~~~----~~W~~~~C~~~~~~iCe~~  124 (125)
T 1jwi_B           81 WTDGARLDY-RALSDEPI-------CFVAESFH----NKWIQWTCNRKKSFVCKYR  124 (125)
T ss_dssp             ETTCCCCCS-CCSCCSCE-------EEEEETTT----CCEEEEETTSCEEEEEEEE
T ss_pred             eeCcCcCcc-CCcCCCCC-------eEEEECCC----CeEecCCCCCCCcEEEeEe
Confidence            999999987 57655565       99987632    3455999999999999974

>1jzn_A Galactose-specific lectin; C-type lectin, protein-disaccharide complex, sugar binding P; HET: BGC GAL; 2.20A {Crotalus atrox} SCOP: d.169.1.1 PDB: 1muq_A*

Probab=99.90  E-value=1.6e-23  Score=186.71  Aligned_cols=129  Identities=16%  Similarity=0.203  Sum_probs=111.1

Q ss_pred             CCchhhhccCCeEEEEecCCcCCHHHHHhHccc--CCCeEeeeCCHhHHHHHHHHhhhcC-CCCceEEEEeccCCCCCeE
Q psy14896         28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS--LDSDLANVNDADEHGFIMYQLFWQD-PQRRKWYFGGTQQSPNLWV  104 (813)
Q Consensus        28 ~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~--~~~~L~~i~~~~e~~~i~~~~~~~~-~~~~~w~g~~~~~~~~~~~  104 (813)
                      .||.||..|+++||+|+... ++|.+|+..|+.  .||+||+|+|++|++||.+++.... ....+||||.+...++.|.
T Consensus         2 ~Cp~gw~~~~~~CY~~~~~~-~~w~~A~~~C~~~~~g~~La~i~s~~e~~~l~~~~~~~~~~~~~~WIGl~~~~~~~~~~   80 (135)
T 1jzn_A            2 NCPLDWLPMNGLCYKIFNQL-KTWEDAEMFCRKYKPGCHLASFHRYGESLEIAEYISDYHKGQENVWIGLRDKKKDFSWE   80 (135)
T ss_dssp             CSCTTSEEETTEEEEEEEEE-ECHHHHHHHHHHHSSSEEECCCCSHHHHHHHHHHHHHHCCSSCCEEEEEECTTSSSCCE
T ss_pred             cCCCCceeeCCEEEEEECCc-cCHHHHHHHHhccCCCCEECccCCHHHHHHHHHHHHhcccCCCCEEEeeEcCCcCCceE
Confidence            59999999999999999984 999999999999  6999999999999999999885432 2358999999988889999


Q ss_pred             EcCCCCCCccccccCCCCCCcc-cCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        105 NEDGTNLNELDAAFLPEPADNV-QRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       105 W~dgs~~~~~~~~~~~~p~~~~-~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      |+||++++| .+|..++|++.. .++|+.|....+  ...|.+..|.....|+|+..
T Consensus        81 W~dg~~~~~-~~W~~~~P~~~~~~~~C~~~~~~~~--~~~w~~~~C~~~~~~ICe~~  134 (135)
T 1jzn_A           81 WTDRSCTDY-LTWDKNQPDHYQNKEFCVELVSLTG--YRLWNDQVCESKDAFLCQCK  134 (135)
T ss_dssp             ETTCCCCCC-CCBCTTCCCCGGGCCCEEEECGGGT--TCSEEEECTTSCEEEEEEEC
T ss_pred             ECCCCccCc-CcCCcCCCCCCCCCCCceEEECCCC--CCcCCCcCCCCCCceeeeec
Confidence            999999987 677777998753 689999976543  14566999999999999974

>2e3x_C Coagulation factor X-activating enzyme light CHAI; disintegrin, metalloproteinase, C-type lectin, hydrolase, BL clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia russellii siamensis}

Probab=99.90  E-value=1.3e-23  Score=183.25  Aligned_cols=119  Identities=19%  Similarity=0.269  Sum_probs=104.4

Q ss_pred             CCchhhhccCCeEEEEecCCcCCHHHHHhHccc--CCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEE
Q psy14896         28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS--LDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVN  105 (813)
Q Consensus        28 ~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~--~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W  105 (813)
                      .||.||..|+++||+++... ++|.+|+..|+.  +||+||+|+|++|++||.+++........+||||.+...++.|.|
T Consensus         2 ~Cp~gw~~~~~~CY~~~~~~-~~w~~A~~~C~~~~~g~~La~i~s~~e~~~l~~~~~~~~~~~~~WIGl~~~~~~~~~~W   80 (122)
T 2e3x_C            2 DCPSGWLSYEQHCYKGFNDL-KNWTDAEKFCTEQKKGSHLVSLHSREEEKFVVNLISENLEYPATWIGLGNMWKDCRMEW   80 (122)
T ss_dssp             CCCSSCEEETTEEEEECCCC-BCHHHHHHHHHHHSTTCCBCCCSSHHHHHHHHHHHHHHCSSSEEEEEEESTTSSSCEEE
T ss_pred             CCCcchhhhCCEeEEEECCC-cCHHHHHHHHhccCCCCEECccCCHHHHHHHHHHHHhcCCCCCEEEeeeecCCCCceEe
Confidence            69999999999999999985 999999999999  899999999999999999998654334689999999888899999


Q ss_pred             cCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeee
Q psy14896        106 EDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEA  159 (813)
Q Consensus       106 ~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~  159 (813)
                      .||+++.| .+|. ++|      +|+.|....+    .|.+..|.....|+|++
T Consensus        81 ~dg~~~~~-~~W~-~~P------~C~~~~~~~g----~w~~~~C~~~~~~ICe~  122 (122)
T 2e3x_C           81 SDRGNVKY-KALA-EES------YCLIMITHEK----VWKSMTCNFIAPVVCKF  122 (122)
T ss_dssp             TTSCCCCC-CCBC-SCC------EEEEEETTTC----CEEEEETTSCBCCEEC-
T ss_pred             CCCCcccc-cccC-CCC------CCEEEECCCC----cEeCCCCCCCCceeecC
Confidence            99999987 6777 777      8999876543    45599999999999974

>3rs1_A C-type lectin domain family 2 member I; C-type lectin-like, ligand of NK receptor, natural killer CE receptors, surface of activated T lymphocytes; 1.94A {Mus musculus}

Probab=99.90  E-value=2.4e-23  Score=181.30  Aligned_cols=118  Identities=18%  Similarity=0.300  Sum_probs=102.3

Q ss_pred             ccCCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeE
Q psy14896         25 LELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWV  104 (813)
Q Consensus        25 ~~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~  104 (813)
                      ....||.||..|+++||+|+... ++|.+|+..|+.+||+||+|++++|++||.+++    ....+||||.+...++.|.
T Consensus         4 ~~~~Cp~gw~~~~~~Cy~~~~~~-~~w~~A~~~C~~~g~~La~i~s~~e~~~l~~~~----~~~~~WIGl~~~~~~~~w~   78 (122)
T 3rs1_A            4 TYAACSKNWTGVGNKCFYFSGYP-RNWTFAQAFCMAQEAQLARFDNEEELIFLKRFK----GDFDSWIGLHRESSEHPWK   78 (122)
T ss_dssp             SSSSCCTTCEEETTEEEEECSSC-BCHHHHHHHHHHTTCEECCCSSHHHHHHHHHHT----TTSCEEEEEECSSTTSCCE
T ss_pred             ccCCCChhheecCCEEEEEECCc-cCHHHHHHHHHhcCCEEeeeCCHHHHHHHHHhc----CCCCEEEEEEecCCCCceE
Confidence            45689999999999999999985 999999999999999999999999999999986    2357999999998899999


Q ss_pred             EcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        105 NEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       105 W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      |+||+++.+ .+| .     .+.++|+.|...    .  |.+..|.....|+|+++
T Consensus        79 W~dg~~~~~-~~w-~-----~~~~~C~~~~~~----~--w~~~~C~~~~~fICekp  121 (122)
T 3rs1_A           79 WTNNTEYNN-MNP-I-----LGVGRYAYLSSD----R--ISSSRSYINRMWICSKL  121 (122)
T ss_dssp             ETTCCBCCC-CSC-C-----CSSCSEEEEETT----E--EEEECSCSCBCBEEEEE
T ss_pred             CCCCCcCCc-ccc-C-----CCCCceEEEeCC----c--EeccccCCCCCeeeecC
Confidence            999999987 455 2     135789988542    3  55999999999999985

>1wmz_A Lectin CEL-I, N-acetyl-D-galactosamine-specific C-type; C-type lectin, N-acetylgalactosamine, invertebrate, sugar binding protein; HET: NGA A2G; 1.70A {Cucumaria echinata} SCOP: d.169.1.1 PDB: 1wmy_A*

Probab=99.90  E-value=1.2e-23  Score=188.71  Aligned_cols=128  Identities=20%  Similarity=0.381  Sum_probs=111.5

Q ss_pred             CCchhhhccCCeEEEEecCCcCCHHHHHhHcc-------cCCCeEeeeCCHhHHHHHHHHhhhcC-CCCceEEEEeccCC
Q psy14896         28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCK-------SLDSDLANVNDADEHGFIMYQLFWQD-PQRRKWYFGGTQQS   99 (813)
Q Consensus        28 ~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~-------~~~~~L~~i~~~~e~~~i~~~~~~~~-~~~~~w~g~~~~~~   99 (813)
                      .||.||..|+++||+|+... ++|.+|+..|+       .+||+||+|++++|++||.+++.... ....+||||.+...
T Consensus         2 ~Cp~gw~~~~~~CY~~~~~~-~~w~~A~~~C~~~~~~~~~~g~~La~i~s~~e~~~l~~~~~~~~~~~~~~WiGl~~~~~   80 (140)
T 1wmz_A            2 QCPTDWEAEGDHCYRFFNTL-TTWENAHHECVSYSCSTLNVRSDLVSVHSAAEQAYVFNYWRGIDSQAGQLWIGLYDKYN   80 (140)
T ss_dssp             CCCTTCEEETTEEEEEEEEE-ECHHHHHHHHHTTCBGGGTEEEEECCCCSHHHHHHHHHHHHHHCCSSCCEEEEEECSSS
T ss_pred             cCCCcceecCCEEEEEECCC-cCHHHHHHhhhhhccCCCCCCcEEcccCCHHHHHHHHHHHhhccCCCCCEEEeeeecCC
Confidence            69999999999999999994 99999999999       99999999999999999999986532 34689999999888


Q ss_pred             CCCeEEcCCCCCCccccccCCCCCCcc-cCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        100 PNLWVNEDGTNLNELDAAFLPEPADNV-QRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       100 ~~~~~W~dgs~~~~~~~~~~~~p~~~~-~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      ++.|.|+||++++| .+|..++|++.. .++|+.|....+.   .|.+..|.....|+|+..
T Consensus        81 ~~~~~W~dg~~~~~-~~W~~~~P~~~~~~~~Cv~~~~~~~~---~W~~~~C~~~~~fICe~~  138 (140)
T 1wmz_A           81 EGDFIWTDGSKVGY-TKWAGGQPDNWNNAEDYGQFRHTEGG---AWNDNSAAAQAKYMCKLT  138 (140)
T ss_dssp             TTCCEETTCCCCCC-CCBCTTCCCCGGGCEEEEEECSSTTT---CEEEEETTCCEEEEEEEE
T ss_pred             CCeeEECCcCcccc-cCcCcccCCCCCCcCCcEEEccCCCC---CEeCCCCCCCceEEEEEe
Confidence            99999999999987 677777998753 6899999765432   556999999999999984

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.90  E-value=1e-22  Score=197.99  Aligned_cols=184  Identities=22%  Similarity=0.331  Sum_probs=143.4

Q ss_pred             CCCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe---eCC--eEEEcC
Q psy14896        188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL---SGG--NLIIND  262 (813)
Q Consensus       188 ~~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~---~~~--~l~i~~  262 (813)
                      .||.|+..|.+..+.+|     ++++|.|.+.|.|.+.|.|+|+|..+.         ....++..   .++  +|.|.+
T Consensus         5 ~pP~~~~~p~~~~v~~G-----~~v~l~C~~~g~p~~~v~W~~~~~~~~---------~~~~~~~~~~~~~~~~~L~i~~   70 (212)
T 2yd1_A            5 HPPEIIRKPQNQGVRVG-----GVASFYCAARGDPPPSIVWRKNGKKVS---------GTQSRYTVLEQPGGISILRIEP   70 (212)
T ss_dssp             CCCEEEECCCCEEEETT-----SCEEEEEEEECSSCCEEEEEETTEECC---------TTSTTEEEEEETTTEEEEEESS
T ss_pred             CCCEEEcCCCceEEecC-----CEEEEEEEEccCCCCeEEEEECCEECC---------CCcceeEEEEcCCCeEEEEEEe
Confidence            47999999999998887     669999999999999999999998762         12333332   233  577777


Q ss_pred             Cccc-cCCeeEEEEeecCceeeEeeeeEEeeeee-------cccccCCCCceeecCCCeEEEecCCCCCCcceEEEeecc
Q psy14896        263 PRQV-EDRGSYHCKASNKFGSIISESVQLAFGFI-------GEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDY  334 (813)
Q Consensus       263 ~~~~-~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~-------~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~  334 (813)
                      . +. +|+|.|+|.|.|..|...+..+.|.|...       |.+...+....+.+|+.++|.|.+ .|.|.+.+.|++++
T Consensus        71 v-~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~-~g~p~p~i~W~~~~  148 (212)
T 2yd1_A           71 V-RAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKA-IGNPTPNIYWIKNQ  148 (212)
T ss_dssp             C-CTTTTCSEEEEEEECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEE-ECSSCCEEEEEETT
T ss_pred             c-CCCCcCceEEEEEEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEe-ccCCCCeEEEEECC
Confidence            5 78 99999999999999985577888888765       334444555677889999999996 78899999999999


Q ss_pred             ccccccCCccEEEccCccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccC
Q psy14896        335 FPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPH  391 (813)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~  391 (813)
                      .++.. ...++. ..++.|.|.++..+|+|.|+|.|.|..|...  +..+.|.|...
T Consensus       149 ~~~~~-~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~--s~~~~l~V~~~  201 (212)
T 2yd1_A          149 TKVDM-SNPRYS-LKDGFLQIENSREEDQGKYECVAENSMGTEH--SKATNLYVKVR  201 (212)
T ss_dssp             EECCT-TSTTEE-EETTEEEECSCCGGGCEEEEEEEEETTEEEE--CCCEEEEEEC-
T ss_pred             eEccc-CCCeEE-ccCCeEEEccCChhhCEEEEEEeecCCCcee--EEEEEEEEEec
Confidence            87533 233443 3467999999999999999999999988643  23477888754

>1dv8_A Asialoglycoprotein receptor 1; C-type lectin CRD, signaling protein; 2.30A {Homo sapiens} SCOP: d.169.1.1

Probab=99.90  E-value=2.8e-23  Score=182.89  Aligned_cols=119  Identities=25%  Similarity=0.406  Sum_probs=103.7

Q ss_pred             CchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcCC
Q psy14896         29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDG  108 (813)
Q Consensus        29 Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~dg  108 (813)
                      ||.||..|+++||+|+... ++|.+|+..|+.+||+||+|+|++|++||.+++.    ...+||||.+.  ++.|.|.||
T Consensus         1 Cp~gw~~~~~~CY~~~~~~-~~w~~A~~~C~~~g~~La~i~s~~e~~~l~~~~~----~~~~WIGl~~~--~~~~~W~dg   73 (128)
T 1dv8_A            1 CPVNWVEHERSCYWFSRSG-KAWADADNYCRLEDAHLVVVTSWEEQKFVQHHIG----PVNTWMGLHDQ--NGPWKWVDG   73 (128)
T ss_dssp             CCTTCEEETTEEEEECSSC-BCHHHHHHHHHHTTCEECCCCSHHHHHHHHHHHC----SSCEEEEEECT--TSSCEETTC
T ss_pred             CCCcceecCCEEEEEECCC-cCHHHHHHHHhhCCCEEcccCCHHHHHHHHHhhC----CCCEEeeEEcC--CCcEEeCCC
Confidence            9999999999999999985 9999999999999999999999999999999973    35799999985  789999999


Q ss_pred             CCC--CccccccCCCCCCc------ccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        109 TNL--NELDAAFLPEPADN------VQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       109 s~~--~~~~~~~~~~p~~~------~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      +++  .| .+|..++|++.      ..++|+.|...     ..|.+..|.....|+|++.
T Consensus        74 ~~~~~~~-~~W~~g~P~~~~~~~~~~~~~C~~~~~~-----g~W~~~~C~~~~~fICe~~  127 (128)
T 1dv8_A           74 TDYETGF-KNWRPEQPDDWYGHGLGGGEDCAHFTDD-----GRWNDDVCQRPYRWVCETE  127 (128)
T ss_dssp             CCSTTSC-CCBCTTCCCCCCTTSSSSCCCEEEECTT-----SCEEEECTTSCBEEEEEEE
T ss_pred             CcCCccc-ccCCCCCCCCcccccCCCCCcCceecCC-----CcCCCccCCCCcceeeeeC
Confidence            998  66 67777799873      46899998532     2455999999999999974

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.90  E-value=2.6e-23  Score=198.27  Aligned_cols=165  Identities=20%  Similarity=0.337  Sum_probs=128.6

Q ss_pred             ceecc-CCCceEEeCCCCCCCc--cEEEEccCCCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEEEEeeecCccccC
Q psy14896        578 EIGNQ-NWGKAMFCDPPTNYPG--VNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNG  654 (813)
Q Consensus       578 ~~~~~-g~~~~l~C~~~~~~p~--~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  654 (813)
                      ..+.+ |+.++|.|.+ .+.|.  +.+.|+|++.++.  .....  ..+++|.|.+++.+|+|.|+|.|.|. |..   .
T Consensus        12 ~~v~~~G~~v~l~C~~-~~~~~~~~~v~W~~~~~~~~--~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~n~-~~~---~   82 (190)
T 2wv3_A           12 VIIRDSLLPVTLQCNL-TSSSHTLMYSYWTKNGVELT--ATRKN--ASNMEYRINKPRAEDSGEYHCVYHFV-SAP---K   82 (190)
T ss_dssp             EECCCSSSCEEEEEEE-EECSSCEEEEEEEETTEECT--TCCBC--CSEEEEEESSCCGGGCEEEEEEEEET-TEE---E
T ss_pred             EEEccCCceEEEEEEe-ccCCCCceEEEEEECCEECc--ccceE--eccEEEEEecCCcccCEEEEEEEEeC-Ccc---c
Confidence            33444 9999999998 56665  8999999997632  22221  14567999999999999999999998 543   3


Q ss_pred             ceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEe--CCcccC---CCceee----ecceE
Q psy14896        655 PFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTR--RGSPLP---RNAYFE----NFNRI  725 (813)
Q Consensus       655 ~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k--~g~~l~---~~~~~~----~~~~~  725 (813)
                      ..+.|.|..+|.+...        .....+.+|+.++|.|.+.|.|.|.|+|+|  +|..+.   .+.++.    ....+
T Consensus        83 ~~~~l~V~~~p~~~~~--------~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~  154 (190)
T 2wv3_A           83 ANATIEVKAAPDITGH--------KRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTE  154 (190)
T ss_dssp             EEEEEEEECCCEEEEE--------CSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEECSSEEE
T ss_pred             ccEEEEEecCCccccc--------CCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEecCCCeeE
Confidence            3478888888765432        122567899999999999999999999999  777663   222222    12348


Q ss_pred             EEECCCC-CCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896        726 LTIPNVK-VEDQGEYICRASNDRSALESSVTISIQ  759 (813)
Q Consensus       726 L~i~~v~-~~d~G~Y~C~a~N~~G~~~~~~~l~V~  759 (813)
                      |.|.+++ .+|+|.|+|.|.|..|..+.++.|.|+
T Consensus       155 L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          155 LNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             EEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             EEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence            9999999 799999999999999999999999986

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.89  E-value=1.8e-23  Score=203.44  Aligned_cols=193  Identities=19%  Similarity=0.276  Sum_probs=139.6

Q ss_pred             ecccccccCCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCC---CeEEEeeCccE-----EEEeecccCCee
Q psy14896        567 FIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEED---KRVFVSYDGAL-----YFSALEQIDAGN  638 (813)
Q Consensus       567 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~---~~~~~~~~~~L-----~i~~~~~~d~G~  638 (813)
                      .+|.+...+....+.+|+.++|.|.+ .+.|.+.+.|+|++..+.....   .......++.+     .|.+++.+|+|.
T Consensus         8 ~pp~i~~~p~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   86 (212)
T 2v9r_A            8 FPPRIVEHPSDLIVSKGEPATLNCKA-EGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGV   86 (212)
T ss_dssp             EEEEEEECCCCEEECTTCCEEECCEE-EEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEE
T ss_pred             CCcceecCCCceEEeCCCcEEEEEEc-CCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeE
Confidence            45666666677788999999999999 7889999999999876432221   12334445544     445678999999


Q ss_pred             EEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEe-cCCCCCeEEEEeCCcccCCCc
Q psy14896        639 YSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVA-FGYPVPSYNWTRRGSPLPRNA  717 (813)
Q Consensus       639 Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~-~g~P~p~i~W~k~g~~l~~~~  717 (813)
                      |+|.|.|..|....  ..+.|.|...+.....       ......+.+|+.++|.|.+ .|.|.|.|+|+|+|..+....
T Consensus        87 Y~C~~~n~~g~~~~--~~~~l~V~~~~~~~~~-------~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~  157 (212)
T 2v9r_A           87 YVCVARNYLGEAVS--HDASLEVAILRDDFRQ-------NPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKD  157 (212)
T ss_dssp             EEEEEEETTEEEEC--CCEEEEECEECSSCSB-------CCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTS
T ss_pred             EEEEEECCCCceee--cceEEEEEecccccee-------CCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCc
Confidence            99999998775422  2356777654432211       2223567899999999999 899999999999999987543


Q ss_pred             -eeeecceEEEECCCCCCCCEEEEEEEEcCCCceEE-EEEEEEEcCCcccccCC
Q psy14896        718 -YFENFNRILTIPNVKVEDQGEYICRASNDRSALES-SVTISIQAEPNFTIPLT  769 (813)
Q Consensus       718 -~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~-~~~l~V~~~P~~~~~~~  769 (813)
                       ++...++.|.|.+++.+|+|.|+|.|.|..|...+ .+.|.|..+|.|...|.
T Consensus       158 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P~~~~~P~  211 (212)
T 2v9r_A          158 ERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKAAA  211 (212)
T ss_dssp             TTEEEETTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---------
T ss_pred             ceEEccCCeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeCchHhhhcc
Confidence             34445678999999999999999999999998765 49999999999876543

>1ukm_B EMS16 B chain, EMS16 subunit B; domain swapping, C-type lectin, toxin; HET: NAG; 1.90A {Echis multisquamatus} SCOP: d.169.1.1 PDB: 1v7p_B*

Probab=99.89  E-value=2.5e-23  Score=183.23  Aligned_cols=121  Identities=17%  Similarity=0.279  Sum_probs=106.4

Q ss_pred             CchhhhccCCeEEEEecCCcCCHHHHHhHccc--CCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEc
Q psy14896         29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS--LDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNE  106 (813)
Q Consensus        29 Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~--~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~  106 (813)
                      ||.||..|+++||+|+... ++|.+|+..|+.  +||+||+|+|++|++||.+++........+||||.+...++.|.|.
T Consensus         1 Cp~gw~~~~~~CY~~~~~~-~~w~~A~~~C~~~~~g~~La~i~s~~e~~~l~~~~~~~~~~~~~WiGl~~~~~~~~~~W~   79 (128)
T 1ukm_B            1 CPLGWSSFDQHCYKVFEPV-KNWTEAEEICMQQHKGSRLASIHSSEEEAFVSKLASKALKFTSMWIGLNNPWKDCKWEWS   79 (128)
T ss_dssp             CCTTCEEETTEEEEEEEEE-ECHHHHHHHHHHHSTTCEECCCCSHHHHHHHHHHHHHHCSSCEEEEEEECTTTTCCEEET
T ss_pred             CCCcCEecCCEeEEEECCc-cCHHHHHHHHhccCCccEEcccCCHHHHHHHHHHHHhcCCcCcEEEecccCCCCCceEeC
Confidence            9999999999999999984 999999999999  8999999999999999999986543346899999998888999999


Q ss_pred             CCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        107 DGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       107 dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      ||++++| .+|. ++|      +|+.|....+  ...|.+..|.....|+|++.
T Consensus        80 dg~~~~~-~~W~-g~P------~C~~~~~~~~--~~~w~~~~C~~~~~fICe~~  123 (128)
T 1ukm_B           80 DNARFDY-KAWK-RRP------YCTVMVVKPD--RIFWFTRGCEKSVSFVCKFL  123 (128)
T ss_dssp             TCCCCCC-CCBC-CCC------EEEEEEECSS--CEEEEEEETTSCEEEEEEEE
T ss_pred             CCCcccc-CCCC-CCC------CcEEEeCCCC--CCeEeCCCCCCCcCeEeeec
Confidence            9999987 6777 777      8999976543  24556999999999999985

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.89  E-value=1.3e-23  Score=220.85  Aligned_cols=220  Identities=16%  Similarity=0.271  Sum_probs=148.6

Q ss_pred             CCceeccCCCceEEeCCCCCC--CccEEEEccC--CCCCcc---------------cCCCeEEEeeC-----ccEEEEee
Q psy14896        576 APEIGNQNWGKAMFCDPPTNY--PGVNYYWARD--YFPNFV---------------EEDKRVFVSYD-----GALYFSAL  631 (813)
Q Consensus       576 ~~~~~~~g~~~~l~C~~~~~~--p~~~v~W~k~--~~~~~~---------------~~~~~~~~~~~-----~~L~i~~~  631 (813)
                      .+..+.+|+.++|.|.+ .+.  +.+.|.|+|+  +.....               ....|+.+..+     ++|+|.++
T Consensus         8 ~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (344)
T 1za6_B            8 GAEVVKPGASVKISCKA-SGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSL   86 (344)
T ss_dssp             CCEEECTTCCEEEEEEE-ESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred             CCeEEeCCCcEEEEEEc-CCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCC
Confidence            34567889999999999 454  4688999997  332110               12356666543     36999999


Q ss_pred             cccCCeeEEEEEEeeecCccccCceeeEEEccCC-CccccccCCCCCCCCCcCCCCCCeEEEEEEecCC-CC-CeEEEEe
Q psy14896        632 EQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHS-NFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGY-PV-PSYNWTR  708 (813)
Q Consensus       632 ~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p-~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~-P~-p~i~W~k  708 (813)
                      +.+|+|.|+|.|.|..+...   ....|.|...+ ....+..     ......+.+|+.++|.|.+.|. |. |.|+|+|
T Consensus        87 ~~~D~G~Y~C~~~n~~~~~~---~~~~l~V~~~~~~~P~i~~-----~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k  158 (344)
T 1za6_B           87 RSEDTAVYFCTRSLNMAYWG---QGTLVTVSSASTKGPSVFP-----LAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNS  158 (344)
T ss_dssp             CGGGCEEEEEEETTTTCEEC---CCEEEEECSSCCBCCEEEE-----ECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETT
T ss_pred             CcccCEEEEEEEecCcceec---CcEEEEEecCCCCCCeEEE-----ccccccccCCCcEEEEEEEeeEECCCeEEEEec
Confidence            99999999999998443222   23567777322 1111110     0111346799999999999987 65 7999999


Q ss_pred             CCcccCCC---------ceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEE----------------------
Q psy14896        709 RGSPLPRN---------AYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS----------------------  757 (813)
Q Consensus       709 ~g~~l~~~---------~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~----------------------  757 (813)
                      +|..+...         ..+ ...+.|+|.++..+| |.|+|.|.|..|.......+.                      
T Consensus       159 ~g~~~~~~~~~~~~~~~~~~-~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~  236 (344)
T 1za6_B          159 GALTSGVHTFPAVLQSSGLY-SLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGS  236 (344)
T ss_dssp             TTBCTTEEECCCEECTTSCE-EEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC------------------
T ss_pred             CCccCceeECCCeECCCCCE-EEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccccccccCCCCCCcccccc
Confidence            99865211         111 113479999999888 999999999988754433332                      


Q ss_pred             --EEcCCcccccCCceeecCCCeEEEEEEEccc-C-CceEEEEECCEeccccc
Q psy14896        758 --IQAEPNFTIPLTDKHMDNQADLTWTCEAFGV-P-DVTYSWFRNGELGHQMT  806 (813)
Q Consensus       758 --V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~-p-~~~v~W~k~g~~l~~~~  806 (813)
                        +..+|.+...+......+|..++|.|.+.|. | .+.|+|+|||++|....
T Consensus       237 ~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~  289 (344)
T 1za6_B          237 GGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYK  289 (344)
T ss_dssp             --CCBCCEEEEECCCGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEE
T ss_pred             CCCCcCCEEEEeCCChHhccCCcEEEEEEEeeEECCCeEEEEEECCeECCCcE
Confidence              2356766543322223346669999999995 4 36899999999997543

>2bpd_A Dectin-1; receptor, beta-glucan, fungal recognition, C-type lectin-like domain, CTLD, carbohydrate; 1.5A {Mus musculus} PDB: 2bph_A 2bpe_A 2cl8_A*

Probab=99.89  E-value=2.3e-23  Score=186.61  Aligned_cols=126  Identities=21%  Similarity=0.292  Sum_probs=106.8

Q ss_pred             cCCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEE
Q psy14896         26 ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVN  105 (813)
Q Consensus        26 ~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W  105 (813)
                      ...||.||..|+++||+|+.. .++|.+|+..|+.+||+||+|+|++|++||.+++... ....+||||.+...++.|.|
T Consensus        14 ~~~Cp~gw~~~~~~CY~~~~~-~~~w~~A~~~C~~~g~~La~i~s~~e~~~l~~~~~~~-~~~~~WIGl~~~~~~~~w~W   91 (142)
T 2bpd_A           14 SQSCLPNWIMHGKSCYLFSFS-GNSWYGSKRHCSQLGAHLLKIDNSKEFEFIESQTSSH-RINAFWIGLSRNQSEGPWFW   91 (142)
T ss_dssp             -CCCCTTCEEETTEEEEEEEE-EECHHHHHHHHHHTTCEECCCCSHHHHHHHHHHHGGG-TTSEEEEEEECSSTTSCCEE
T ss_pred             CCCCCccceecCCEEEEEECC-CCCHHHHHHHHHHcCCEEeeeCCHHHHHHHHHHHhcc-CCCCEEEEeecCCCCCCeEe
Confidence            456999999999999999998 4999999999999999999999999999999998653 34689999999888999999


Q ss_pred             cCCCCCCccccccCC-CCCC-cccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        106 EDGTNLNELDAAFLP-EPAD-NVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       106 ~dgs~~~~~~~~~~~-~p~~-~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      .||+++.| .+|..+ +|++ ...++|+.|..  +  .  |.+..|.....|+|++.
T Consensus        92 ~dg~~~~~-~~w~~~~~~~~~~~~~~Cv~~~~--~--~--W~d~~C~~~~~fICe~~  141 (142)
T 2bpd_A           92 EDGSAFFP-NSFQVRNAVPQESLLHNCVWIHG--S--E--VYNQICNTSSYSICEKE  141 (142)
T ss_dssp             TTSCBCCS-SSCCEECCCCSCCSCCCEEEEET--T--E--EEEECTTSCEEEEEEEC
T ss_pred             CCCCcccc-ccccccCCCCCCCCCCCCcEEcC--C--e--EECcCCCCCceeeeeee
Confidence            99999997 566554 3433 35789999852  2  3  45999999999999974

>1oz7_B Echicetin B-chain; platelet aggregation, dimer, toxin; 2.40A {Echis carinatus} SCOP: d.169.1.1

Probab=99.89  E-value=1.6e-23  Score=183.06  Aligned_cols=120  Identities=21%  Similarity=0.349  Sum_probs=105.1

Q ss_pred             CCchhhhccCCeEEEEecCCcCCHHHHHhHccc--CCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEE
Q psy14896         28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS--LDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVN  105 (813)
Q Consensus        28 ~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~--~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W  105 (813)
                      .||.||..|+++||+|+... ++|.+|+..|+.  +||+||+|+|++|++||.+++........+||||.+...++.|.|
T Consensus         1 ~Cp~gw~~~~~~CY~~~~~~-~~w~~A~~~C~~~~~g~~La~i~s~~e~~~l~~~~~~~~~~~~~WIGl~~~~~~~~~~W   79 (123)
T 1oz7_B            1 NCLPDWSVYEGYCYKVFKER-MNWADAEKFCTKQHKDGHLVSFRNSKEVDFVISLAFPMLKNDLVWIGLTDYWRDCNWEW   79 (123)
T ss_dssp             CCCTTCEEETTEEEEEEEEE-ECHHHHHHHHHHHSTTCEECCCCCSSHHHHHHHTSSTTTTCSEEEEEEECCCCGGGEEE
T ss_pred             CCCCCcEEcCCEEEEEECCc-cCHHHHHHHHhccCCCcEECCcCCHHHHHHHHHHHHhcCCCCCEEEeeeeCCCCCCEEE
Confidence            49999999999999999984 999999999999  999999999999999999988543224689999999888899999


Q ss_pred             cCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        106 EDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       106 ~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      .||++++| .+|. ++|      +|+.|....+    .|.+..|.....|+|++.
T Consensus        80 ~dg~~~~~-~~W~-g~P------~C~~~~~~~g----~w~~~~C~~~~~~ICe~~  122 (123)
T 1oz7_B           80 SDGAQLDY-KAWD-NER------HCFIYKNTDN----QWTRRDCTWTFSFVCKCP  122 (123)
T ss_dssp             TTCCCCCS-CCBC-SST------TEEEEEGGGT----EEEEECTTSCEEEEEEEE
T ss_pred             cCCCcccc-cCCC-CCC------CeEEEECCCC----cEeCCCCCCCeeEEEeEe
Confidence            99999987 6777 776      8999976543    455999999999999974

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.89  E-value=9.3e-23  Score=195.27  Aligned_cols=182  Identities=22%  Similarity=0.273  Sum_probs=140.3

Q ss_pred             CCCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCC--eEEEcCCcc
Q psy14896        188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGG--NLIINDPRQ  265 (813)
Q Consensus       188 ~~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~  265 (813)
                      .+|.|...|.+..+.+|     ++++|.|.+.|.|.+.+.|+|+|..+....      ....+....++  +|.|.+. +
T Consensus         4 ~~P~~~~~~~~~~v~~G-----~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~------~~~~~~~~~~~~~~L~i~~~-~   71 (194)
T 2a38_A            4 QAPTFTQPLQSVVVLEG-----STATFEAHISGFPVPEVSWFRDGQVISTST------LPGVQISFSDGRAKLTIPAV-T   71 (194)
T ss_dssp             EEEEEEECCCCEEEETT-----SCEEEEEEEEEESCCEEEEEESSSBCCTTT------STTCEEEEETTEEEEEESSC-C
T ss_pred             CCCeEEccCCceEEECC-----CEEEEEEEEEecCCCEEEEEECCEEccccc------CCceEEEeCCCEEEEEECCC-C
Confidence            36889999999988887     669999999999999999999998763211      11223334444  6777775 8


Q ss_pred             ccCCeeEEEEeecCceeeEeeeeEEeee---eecccccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCC
Q psy14896        266 VEDRGSYHCKASNKFGSIISESVQLAFG---FIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEED  342 (813)
Q Consensus       266 ~~d~G~Y~C~a~n~~g~~~s~~~~l~v~---~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~  342 (813)
                      .+|+|.|+|.|.|..|.. ...+.|.|.   .+|.+........+..|+.+.|.|.+ .|.|.+.+.|+|+|.++.  ..
T Consensus        72 ~~d~G~Y~C~~~n~~~~~-~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~v~W~~~~~~~~--~~  147 (194)
T 2a38_A           72 KANSGRYSLKATNGSGQA-TSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRV-TGIPTPVVKFYRDGAEIQ--SS  147 (194)
T ss_dssp             GGGCEEEEEEEEETTEEE-EEEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEE-EEESCCEEEEEETTEECC--CS
T ss_pred             cccCEEEEEEEEcCCceE-eEEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEE-EEecCCeEEEEECCEECC--CC
Confidence            999999999999998876 556777776   45555555666778889999999996 778999999999998753  44


Q ss_pred             ccEEEccCc---cEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEE
Q psy14896        343 KRVFVSYDG---ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKV  388 (813)
Q Consensus       343 ~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v  388 (813)
                      .++.+..++   +|.|.++..+|+|.|+|.|.|..|....   .+.|.|
T Consensus       148 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~---~~~l~V  193 (194)
T 2a38_A          148 LDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATS---TAELLV  193 (194)
T ss_dssp             SSEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEEEEE---EEEEEE
T ss_pred             CcEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCceEE---EEEEEE
Confidence            455555444   7999999999999999999999875432   255554

>3bx4_A Aggretin alpha chain; toxin; 1.70A {Agkistrodon rhodostoma} PDB: 2vrp_A

Probab=99.89  E-value=1.8e-23  Score=186.43  Aligned_cols=125  Identities=16%  Similarity=0.244  Sum_probs=107.4

Q ss_pred             CCCchhhhccCCeEEEEecCCcCCHHHHHhHccc--CCCeEeeeCCHhHHHHHHHHhhhcCCC---CceEEEEe--ccCC
Q psy14896         27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS--LDSDLANVNDADEHGFIMYQLFWQDPQ---RRKWYFGG--TQQS   99 (813)
Q Consensus        27 ~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~--~~~~L~~i~~~~e~~~i~~~~~~~~~~---~~~w~g~~--~~~~   99 (813)
                      ..||.||..|+++||+|+... ++|.+|+..|+.  .||+||+|+|++|++||.+++......   ..+||||.  +...
T Consensus         3 ~~Cp~gw~~~~~~CY~~~~~~-~~w~~A~~~C~~~~~g~~La~i~s~~e~~~l~~~~~~~~~~~~~~~~WIGl~~~~~~~   81 (136)
T 3bx4_A            3 EDCDFGWSPYDQHCYQAFNEQ-KTWDEAEKFCRAQENGAHLASIESNGEADFVSWLISQKDELADEDYVWIGLRAQNKEQ   81 (136)
T ss_dssp             -CCCTTCEEETTEEEEEEEEE-ECHHHHHHHHHTSTTTCEECCCCSHHHHHHHHHHHHTCGGGTTCCEEEEEEEECCCSS
T ss_pred             CCCCCCCEecCCEEEEEECCC-cCHHHHHHHHhccCCCcEEcccCCHHHHHHHHHHHHhhcccCccCCEEEeeeccCCCC
Confidence            469999999999999999984 999999999999  899999999999999999998543222   67999999  8878


Q ss_pred             CCCeEEcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        100 PNLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       100 ~~~~~W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      ++.|.|+||++++| .+|..++|+     +|+.|....+  ...|.+..|.....|+|+..
T Consensus        82 ~~~~~W~dg~~~~~-~~W~~~~P~-----~C~~~~~~~~--~~~W~~~~C~~~~~fICe~~  134 (136)
T 3bx4_A           82 QCSSEWSDGSSVSY-ENLIDLHTK-----KCGALEKLTG--FRKWVNYYCEQMHAFVCKLL  134 (136)
T ss_dssp             SSCCBCTTSCBCCC-CCCTTCCCC-----CEEEEEGGGT--TTSEEEECTTSCEEEEEEEC
T ss_pred             CCceEeCCCCccCc-ccccCCCCC-----ccEEEEecCC--CCeEeCCCCCCCcceEEeec
Confidence            89999999999987 677666886     8999976543  24566999999999999984

>3ubu_A Agglucetin subunit alpha-1; platelet inhibiting, agkisacucetin, dimer, toxin, C-type LEC GPIB inhibitor, GPIB binding; 1.91A {Deinagkistrodon acutus}

Probab=99.89  E-value=2.1e-23  Score=184.81  Aligned_cols=124  Identities=19%  Similarity=0.306  Sum_probs=107.3

Q ss_pred             CCchhhhccCCeEEEEecCCcCCHHHHHhHcccC--CCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCC--CCCe
Q psy14896         28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSL--DSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQS--PNLW  103 (813)
Q Consensus        28 ~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~--~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~--~~~~  103 (813)
                      .||.||..|+++||+++.. .++|.+|+..|+.+  ||+||+|++++|++||..++........+||||.+...  ++.|
T Consensus         3 ~Cp~gw~~~~~~CY~~~~~-~~tw~~A~~~C~~~~~G~~La~i~s~~e~~~l~~~~~~~~~~~~~WIGl~~~~~~~~~~~   81 (131)
T 3ubu_A            3 DCLPGWSAYDQSCYRVFKL-LKTWDDAEKFCTERPKGGHLVSIESAGERDFVAQLVSENKQTDNVWLGLKIQSKGQQCST   81 (131)
T ss_dssp             CCCTTCEEETTEEEEEEEE-EECHHHHHHHHHTSTTCCEECCCCSHHHHHHHHHHHHHTTCCSCEEEEEEEECSSSSSCC
T ss_pred             CCCccCEecCCEeeEEcCC-CcCHHHHHHHHhccCCCceEceeCCHHHHHHHHHHHHhcCCCCCEEEeEecCCCCCCCce
Confidence            6999999999999999998 49999999999999  89999999999999999998665434589999999877  8999


Q ss_pred             EEcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        104 VNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       104 ~W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      .|+||++++| .+|..++|     ++|+.|....+  ...|.+..|.....|+|+++
T Consensus        82 ~W~dg~~~~~-~~w~~~~~-----~~Cv~~~~~~~--~~~W~~~~C~~~~~fiCe~~  130 (131)
T 3ubu_A           82 EWTDGSSVSY-ENFSEYQS-----KKCFVLEKNTG--FRTWLNLNCGSEYSFVCKSP  130 (131)
T ss_dssp             BCTTSCBCCC-CCBCTTTC-----CCEEEECGGGT--SCSEEEECTTCCEEEEEEEC
T ss_pred             EeCCCCccce-eccCCCCC-----CCcEEEeCCCC--CCeEcCCCCCCCceeEEecC
Confidence            9999999997 57665554     78999976544  33566999999999999984

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.89  E-value=3.1e-23  Score=196.28  Aligned_cols=172  Identities=19%  Similarity=0.233  Sum_probs=133.8

Q ss_pred             cccccCCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEee-----CccEEEEeecccCCeeEEEEEE
Q psy14896        570 EFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSY-----DGALYFSALEQIDAGNYSCNVQ  644 (813)
Q Consensus       570 ~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~-----~~~L~i~~~~~~d~G~Y~C~a~  644 (813)
                      .+...+....+.+|+.++|.|.+ .+.|.+.+.|+|++..+.  ...+.....     .++|.|.+++.+|+|.|+|.|.
T Consensus         4 ~~~~~p~~~~v~~G~~v~l~C~~-~~~p~~~v~W~k~~~~~~--~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   80 (182)
T 1rhf_A            4 KLMGAPVKLTVSQGQPVKLNCSV-EGMEEPDIQWVKDGAVVQ--NLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVE   80 (182)
T ss_dssp             ---CCCEEEEEETTCCEEEEEEE-ESCSSCCEEEEETTEECC--SSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEES
T ss_pred             EEEeCCcceEEeCCCcEEEEEEE-eCCCCCeEEEEECCeecC--CCCceEEEecCCCceEEEEEeecCcccCeEEEEEEE
Confidence            34444555677889999999999 688999999999997643  333333332     2579999999999999999999


Q ss_pred             eeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCC-eEEEEeCCcccCCCceeeecc
Q psy14896        645 SKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVP-SYNWTRRGSPLPRNAYFENFN  723 (813)
Q Consensus       645 n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p-~i~W~k~g~~l~~~~~~~~~~  723 (813)
                      |..|..  ....+.|.|..+|.+...        .....+.+|+.++|.|.+.|.|.| .|+|+|+|..+.....   ..
T Consensus        81 ~~~~~~--~~~~~~l~V~~~p~~~~~--------~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~---~~  147 (182)
T 1rhf_A           81 DGGETE--ISQPVWLTVEGVPFFTVE--------PKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP---SP  147 (182)
T ss_dssp             SCTTCE--ECCCEEEEEECSCEEEEC--------CCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE---SS
T ss_pred             cCCCcE--EEEEEEEEEecCCeEEec--------CcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCC---Cc
Confidence            986542  233578888888765431        122568899999999999999999 9999999999866543   57


Q ss_pred             eEEEECCCCCCCCEEEEEEEEcCCCceE-EEEEEEEE
Q psy14896        724 RILTIPNVKVEDQGEYICRASNDRSALE-SSVTISIQ  759 (813)
Q Consensus       724 ~~L~i~~v~~~d~G~Y~C~a~N~~G~~~-~~~~l~V~  759 (813)
                      ..|.|.++  +|+|.|+|.|.|..|... .++.|.|+
T Consensus       148 ~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~Vk  182 (182)
T 1rhf_A          148 SVLNVTGV--TQSTMFSCEAHNLKGLASSRTATVHLQ  182 (182)
T ss_dssp             EEEEECCC--SSCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             eEEEEecc--ccCeEEEEEEECCCCCcccceEEEEeC
Confidence            78999998  599999999999999885 48888874

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.89  E-value=8.9e-23  Score=198.35  Aligned_cols=189  Identities=23%  Similarity=0.328  Sum_probs=138.5

Q ss_pred             CCCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEee---CCeEEEcCCc
Q psy14896        188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS---GGNLIINDPR  264 (813)
Q Consensus       188 ~~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~  264 (813)
                      .||.|+..|.+..+.+|     +++.|.|.+.|.|.+.|.|+|+|..+..        .........   +..|.|.+..
T Consensus         5 ~~P~~~~~p~~~~v~~G-----~~v~L~C~~~g~p~~~v~W~k~~~~~~~--------~~~~~~~~~~~~~~~L~i~~v~   71 (212)
T 2yd6_A            5 TPPRFTRTPVDQTGVSG-----GVASFICQATGDPRPKIVWNKKGKKVSN--------QRFEVIEFDDGSGSVLRIQPLR   71 (212)
T ss_dssp             EEEEEEECCCCEEEETT-----SCEEEEEEEEEESCCEEEEEETTEECCC--------TTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCCeEEeCcceeEEecC-----CeEEEEEEEeeCCCCEEEEEECCcCCCC--------CceeEEEEcCCCceEEEEeccC
Confidence            46899999999988887     6699999999999999999999987631        111111111   2346676641


Q ss_pred             cccCCeeEEEEeecCceeeEeeeeEEeeeeec-------ccccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccc
Q psy14896        265 QVEDRGSYHCKASNKFGSIISESVQLAFGFIG-------EFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPN  337 (813)
Q Consensus       265 ~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~-------~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~  337 (813)
                      +.+|+|.|+|.|.|..|.. +..+.|.|...+       .+...+....+.+|+.++|.|.+ .|.|.+.+.|+|+|.++
T Consensus        72 ~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~-~g~p~p~v~W~~~g~~l  149 (212)
T 2yd6_A           72 TPRDEAIYECVASNNVGEI-SVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAA-SGNPDPEITWFKDFLPV  149 (212)
T ss_dssp             TTTTCEEEEEEEEETTEEE-EEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEE-ECSSCCEEEEEETTEEC
T ss_pred             CCCCCeEEEEEEEcCCCcE-EEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEe-cCCCCCeEEEEECCccc
Confidence            4899999999999999986 667888886642       23334455677789999999996 68899999999999876


Q ss_pred             cccC-CccEEEcc---CccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCc
Q psy14896        338 FVEE-DKRVFVSY---DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSN  393 (813)
Q Consensus       338 ~~~~-~~~~~~~~---~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~  393 (813)
                      .... ..++....   .+.|.|.++..+|+|.|+|.|.|..|...  +..+.|.|...+.
T Consensus       150 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~--s~~a~l~~~~~~~  207 (212)
T 2yd6_A          150 DTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRY--SAPANLYVRGTKH  207 (212)
T ss_dssp             ------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEE--CCCEEEEEEC---
T ss_pred             cCcCCCceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCccc--cccccEEEEeccc
Confidence            4331 23444433   36899999999999999999999998543  4457788776544

>3c22_A C-type lectin domain family 4 member K; coiled coil, glycoprotein, membrane, signal-anchor, transmembrane, immune system, sugar binding protein; 1.50A {Homo sapiens} PDB: 3p5g_A* 3p5d_A* 3p5f_A* 3p5e_A* 3p5h_A* 3p5i_A* 3p7g_A* 3p7f_A* 3p7h_A* 3bc7_A* 3bbs_A* 3bc6_A*

Probab=99.89  E-value=3.2e-23  Score=189.21  Aligned_cols=128  Identities=20%  Similarity=0.222  Sum_probs=107.9

Q ss_pred             ccCCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeE
Q psy14896         25 LELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWV  104 (813)
Q Consensus        25 ~~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~  104 (813)
                      ....||.||..|+++||+|+.. .++|.+|+..|+.+||+||+|+|++|++||.+++.    ...+||||.+...++.|.
T Consensus        19 ~~~~Cp~gw~~~~~~CY~~~~~-~~~w~~A~~~C~~~g~~La~i~s~~e~~~l~~~~~----~~~~WIGl~~~~~~~~w~   93 (156)
T 3c22_A           19 ILQVVSQGWKYFKGNFYYFSLI-PKTWYSAEQFCVSRNSHLTSVTSESEQEFLYKTAG----GLIYWIGLTKAGMEGDWS   93 (156)
T ss_dssp             -----CCCCEEETTEEEEECSS-CBCHHHHHHHHHHTTCEECCCCSHHHHHHHHHHHT----TCCEEEEEEEETTTTEEE
T ss_pred             hhccCCCCCEEcCCEEEEEECC-CCCHHHHHHHHHhCCCEEeecCCHHHHHHHHHhhc----CCcEEEeeeccCCCCceE
Confidence            4557999999999999999998 49999999999999999999999999999999873    457999999988899999


Q ss_pred             EcCCCCCCc---cccccCCCCCCc-ccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        105 NEDGTNLNE---LDAAFLPEPADN-VQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       105 W~dgs~~~~---~~~~~~~~p~~~-~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      |.||+++.+   +.+|..++|++. ..++|+.|....   ...|.+..|.....|+|++.
T Consensus        94 W~dG~~~~~~~~~~~W~~geP~~~~~~~~Cv~~~~~~---~~~W~d~~C~~~~~fICe~~  150 (156)
T 3c22_A           94 WVDDTPFNKVQSARFWIPGEPNNAGNNEHCGNIKAPS---LQAWNDAPCDKTFLFICKRP  150 (156)
T ss_dssp             ETTCCCCCHHHHGGGBCTTCCCCGGGCCCEEEECSSS---SSCEEEECTTSCBEEEEEEE
T ss_pred             eCCCCccccccccCcCCCCCCCCCCCCCCceEECCCC---CCcEECCCCCCCeeEEEeeC
Confidence            999999986   356777799875 578999986543   24455999999999999995

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.89  E-value=4.2e-23  Score=200.80  Aligned_cols=177  Identities=20%  Similarity=0.304  Sum_probs=137.4

Q ss_pred             ccCCCceeccCCCceEEeCCCCCCCccEEEEccCCCCC----------cccCCCeEEEeeCccEEEEeecccCCeeEEEE
Q psy14896        573 LKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPN----------FVEEDKRVFVSYDGALYFSALEQIDAGNYSCN  642 (813)
Q Consensus       573 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~----------~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  642 (813)
                      ..+....+.+|+.++|.|.+ .+.|.+.|.|+|++..+          ......++.... ++|.|.+++.+|+|.|+|.
T Consensus         6 ~~~~~~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~L~i~~v~~~D~G~Y~C~   83 (212)
T 1f97_A            6 TAQSDVQVPENESIKLTCTY-SGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS-SGITFSSVTRKDNGEYTCM   83 (212)
T ss_dssp             CSCSEEEEETTCCEEEECEE-ESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEET-TEEEESCCCGGGCEEEEEE
T ss_pred             ecCCCeEEEcCCCEEEEeEe-CCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeec-eeEEEcccCcccCeEEEEE
Confidence            34455667889999999999 68899999999998652          122334554443 7899999999999999999


Q ss_pred             EEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEE-ecCCCCCeEEEEeCCc-ccCCCce--
Q psy14896        643 VQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECV-AFGYPVPSYNWTRRGS-PLPRNAY--  718 (813)
Q Consensus       643 a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~-~~g~P~p~i~W~k~g~-~l~~~~~--  718 (813)
                      |.|..|. ......+.|.|..+|.......        +..+.+|+.++|.|. +.|.|.|.|+|+|+|. .+.....  
T Consensus        84 ~~~~~g~-~~~~~~~~l~V~~~p~~~~~~~--------~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~  154 (212)
T 1f97_A           84 VSEEGGQ-NYGEVSIHLTVLVPPSKPTISV--------PSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKT  154 (212)
T ss_dssp             EEETTSS-SEEEEEEEEEEEBCCCCCEEEC--------CSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----C
T ss_pred             EEccCCC-cccEEEEEEEEEcCCCCcccCC--------ccccCCCCeEEEEEEcccCcCCCEEEEEeCCccccccccccc
Confidence            9998762 2334457888888886654322        245789999999999 7899999999999999 8865432  


Q ss_pred             ---------eeecceEEEECCCCCCCCEEEEEEEEcCCCce--EEEEEEEEEc
Q psy14896        719 ---------FENFNRILTIPNVKVEDQGEYICRASNDRSAL--ESSVTISIQA  760 (813)
Q Consensus       719 ---------~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~--~~~~~l~V~~  760 (813)
                               .....+.|.|.+++.+|+|.|+|.|.|..|..  +..+.|.|..
T Consensus       155 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~  207 (212)
T 1f97_A          155 RAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE  207 (212)
T ss_dssp             BSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred             ccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence                     12346789999999999999999999999988  5677777764

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.89  E-value=1.4e-22  Score=193.39  Aligned_cols=172  Identities=16%  Similarity=0.273  Sum_probs=141.7

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCC-CCeEEEee-cccccccccccccccCCCccEEe-----eCCeEEEc
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYP-NPSYEWFK-EDYVQDRLVANLIDPLSDKRFTL-----SGGNLIIN  261 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P-~p~v~W~k-~g~~l~~~~~~~~~~~~~~~~~~-----~~~~l~i~  261 (813)
                      |+.|...|.+..+.+|     ++++|.|.+.+.| .+.+.|+| +|..+..         ...++..     .+++|.|.
T Consensus         2 p~~v~~~p~~~~v~~G-----~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~---------~~~~~~~~~~~~~~~~L~i~   67 (191)
T 1epf_A            2 VLQVDIVPSQGEISVG-----ESKFFLCQVAGDAKDKDISWFSPNGEKLSP---------NQQRISVVWNDDDSSTLTIY   67 (191)
T ss_dssp             -CCEEEESSSEEEETT-----CCEEEEEEECCCSCCCEEEEECTTSCEECC---------BSSSEEEEEEETTEEEEEEC
T ss_pred             ceEEEecCCCcEEcCC-----CCEEEEEECCCCCCCceEEEEeCCCccccC---------CCCeEEEEECCCCceEEEEc
Confidence            5678888899988887     6699999999876 88999999 8876531         2233333     13567887


Q ss_pred             CCccccCCeeEEEEeecCceeeEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccC
Q psy14896        262 DPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEE  341 (813)
Q Consensus       262 ~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~  341 (813)
                      +. +.+|+|.|+|.|.|..|...+..+.|.|..+|.+...+....+.+|+.++|.|.+ .|.|.+.+.|++++.++....
T Consensus        68 ~~-~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~v~W~~~~~~~~~~~  145 (191)
T 1epf_A           68 NA-NIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDV-VSSLPPTIIWKHKGRDVILKK  145 (191)
T ss_dssp             SC-CGGGCEEEEEEEEETTTEEEEEEEEEEEECCSEEEECCSSEECCTTSCEEECCEE-ECSSCCEEEEEETTEEGGGGC
T ss_pred             cC-CcccCEEEEEEEEcCCCcceEEEEEEEeecCceEecCCCcEeecCCCeEEEEEEE-CCCCCCEEEEEECCEEeeccC
Confidence            75 8999999999999998555577888888877777777777788899999999996 588999999999999876667


Q ss_pred             CccEEEccCccEEEeeeeecCCeeeEEEEeeeccc
Q psy14896        342 DKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSD  376 (813)
Q Consensus       342 ~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~  376 (813)
                      ..++....++.|.|.++..+|+|.|+|.|.|..+.
T Consensus       146 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~  180 (191)
T 1epf_A          146 DVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARG  180 (191)
T ss_dssp             CTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGT
T ss_pred             CceEEEecCCeEEECCCChhhCEEEEEEEEEecce
Confidence            77888888899999999999999999999998753

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.89  E-value=1.1e-22  Score=197.90  Aligned_cols=194  Identities=25%  Similarity=0.449  Sum_probs=146.0

Q ss_pred             CCCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcC----C
Q psy14896        188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIIND----P  263 (813)
Q Consensus       188 ~~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~----~  263 (813)
                      .||.|+..|.+..+.+|     +++.|.|.+.|.|.+.+.|||+|..+....    ......+....++.+.+..    .
T Consensus         8 ~pp~i~~~p~~~~v~~G-----~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~i~~   78 (212)
T 2v9r_A            8 FPPRIVEHPSDLIVSKG-----EPATLNCKAEGRPTPTIEWYKGGERVETDK----DDPRSHRMLLPSGSLFFLRIVHGR   78 (212)
T ss_dssp             EEEEEEECCCCEEECTT-----CCEEECCEEEEESCCEEEEEETTEECCCTT----TCTTCSEEECTTSCEEESSCCCCS
T ss_pred             CCcceecCCCceEEeCC-----CcEEEEEEcCCCCCCEEEEEECCEEeeccc----cccccceEEecCCcEEEEEEEecC
Confidence            36899999999988887     669999999999999999999998764221    0111223444566655443    2


Q ss_pred             ccccCCeeEEEEeecCceeeEeeeeEEeeeeecc-cccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCC
Q psy14896        264 RQVEDRGSYHCKASNKFGSIISESVQLAFGFIGE-FNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEED  342 (813)
Q Consensus       264 ~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~-~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~  342 (813)
                      ++.+|+|.|+|.|.|..|...+..+.|.|...++ +...+....+..|+.++|.|.+..+.|.+.+.|++++..+.. ..
T Consensus        79 ~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~-~~  157 (212)
T 2v9r_A           79 KSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDD-KD  157 (212)
T ss_dssp             SCCCSCEEEEEEEEETTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECT-TS
T ss_pred             CCcccCeEEEEEEECCCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCC-Cc
Confidence            4789999999999999998767788888877554 444456677889999999999768889999999999987532 22


Q ss_pred             ccEEEccCccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCcc
Q psy14896        343 KRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNF  394 (813)
Q Consensus       343 ~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~  394 (813)
                      .++. ..++.|.|.++..+|+|.|+|.|.|..|..  .+..+.|.|..+|.+
T Consensus       158 ~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~--~s~~~~l~V~~~P~~  206 (212)
T 2v9r_A          158 ERIT-IRGGKLMITYTRKSDAGKYVCVGTNMVGER--ESEVAELTVLERPSF  206 (212)
T ss_dssp             TTEE-EETTEEEESSCCGGGCEEEEEEEEETTEEE--ECCCEEEEEEC----
T ss_pred             ceEE-ccCCeEEEeeCCHhhCeeEEEEEecccCce--ecceEEEEEEeCchH
Confidence            3333 356799999999999999999999988753  233478888876653

>1sb2_A Rhodocetin alpha subunit; C-type lectin, domain swapping, toxin; 1.90A {Calloselasma rhodostoma} SCOP: d.169.1.1 PDB: 3gpr_A

Probab=99.89  E-value=4.1e-23  Score=183.50  Aligned_cols=124  Identities=17%  Similarity=0.272  Sum_probs=108.5

Q ss_pred             CCchhhhccCCeEEEEecCCcCCHHHHHhHccc--CCCeEeeeCCHhHHHHHHHHhhhcCC--CCceEEEEe--ccCCCC
Q psy14896         28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS--LDSDLANVNDADEHGFIMYQLFWQDP--QRRKWYFGG--TQQSPN  101 (813)
Q Consensus        28 ~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~--~~~~L~~i~~~~e~~~i~~~~~~~~~--~~~~w~g~~--~~~~~~  101 (813)
                      .||.||..|+++||+++... ++|.+|+..|+.  .||+||+|+|++|++||.+++.....  ...+||||.  +...++
T Consensus         1 ~Cp~gw~~~~~~Cy~~~~~~-~~w~~A~~~C~~~~~g~~La~i~s~~e~~~l~~~~~~~~~~~~~~~WIGl~~~~~~~~~   79 (133)
T 1sb2_A            1 DCPDGWSSTKSYCYRPFKEK-KTWEEAERFCTEQEKEAHLVSMENRLEAVFVDMVMENNFENKIYRSWIGLKIENKGQRS   79 (133)
T ss_dssp             CCCTTCEECSSEEEEEEEEE-ECHHHHHHHHHTSSSCCEECCCSSHHHHHHHHHHHHHHTTTCCEEEEEEEEEECSSTTS
T ss_pred             CcCCCcEEcCCEeEEEECCc-CCHHHHHHHHhhhCCCcEEeeECCHHHHHHHHHHHHhhccCccCCEEEeeeccCCCCCC
Confidence            49999999999999999984 999999999999  89999999999999999999865433  468999999  887889


Q ss_pred             CeEEcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        102 LWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       102 ~~~W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      .|.|.||++++| .+|.. +|    .++|+.|....+  ...|.+..|.....|+|+..
T Consensus        80 ~~~W~dg~~~~~-~~W~~-~P----~~~C~~~~~~~~--~~~w~~~~C~~~~~fICe~~  130 (133)
T 1sb2_A           80 NLEWSDGSSISY-ENLYE-PY----MEKCFLMDHQSG--LPKWHTADCEEKNVFMCKFQ  130 (133)
T ss_dssp             SEEETTCCCCCC-CCBSS-CC----CEEEEEEEESSS--SCEEEEECTTSCEEEEEEEE
T ss_pred             ceEECCCCcccc-cccCc-CC----CCCcEEEEecCC--CCeEccCCCCCCceeEeccc
Confidence            999999999987 67777 87    579999977643  14556999999999999985

>2afp_A Protein (SEA raven type II antifreeze protein); recombinant SEA raven protein, solution backbone fold, C- type lectin; NMR {Hemitripterus americanus} SCOP: d.169.1.1

Probab=99.89  E-value=2.7e-24  Score=189.75  Aligned_cols=126  Identities=21%  Similarity=0.366  Sum_probs=110.2

Q ss_pred             ccCCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeE
Q psy14896         25 LELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWV  104 (813)
Q Consensus        25 ~~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~  104 (813)
                      .+..||.||..|+++||+|+... ++|.+|+..|+.+||+||+|+|++|++||.++     ....+||||.+...++.|.
T Consensus         3 ~~~~Cp~gw~~~~~~CY~~~~~~-~~w~~A~~~C~~~g~~La~i~s~~e~~~l~~~-----~~~~~WIGl~~~~~~~~~~   76 (129)
T 2afp_A            3 AGPNCPAGWQPLGDRCIYYETTA-MTWALAETNCMKLGGHLASIHSQEEHSFIQTL-----NAGVVWIGGSACLQAGAWT   76 (129)
T ss_dssp             CCCSSCSSSCCCSSSEECCCCSC-CCHHHHHHHHHHHSCEECCCSSSHHHHHHHHH-----CSSCBCCSCBCSSSSSCCB
T ss_pred             ccCCCCcCcEEcCCEEEEEECCc-CCHHHHHHHHHHcCCEECCcCCHHHHHHHHhc-----CCCCEEEcccccCCCCceE
Confidence            35679999999999999999995 99999999999999999999999999999888     3457899999988889999


Q ss_pred             EcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        105 NEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       105 W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      |+||++++| .+|..++|++...++|+.|....+.   .|.+..|.....|+|+..
T Consensus        77 W~dg~~~~~-~~W~~~~P~~~~~~~C~~~~~~~~~---~w~~~~C~~~~~~iCe~~  128 (129)
T 2afp_A           77 WSDGTPMNF-RSWCSTKPDDVLAACCMQMTAAADQ---CWDDLPCPASHKSVCAMT  128 (129)
T ss_dssp             SSSSCCCCC-CCSSSCCSCCSTTCCBCCBCCSSSS---CBCCBCSCCCCCCCEEEC
T ss_pred             eCCCCcccc-CCcCCCccCCCCCCCCeEEccCCCC---EEeCCCCCCCcceEEeee
Confidence            999999987 6777779987656899999665432   455999999999999974

>2zib_A Type II antifreeze protein; thermal hysteresis, lectin; 1.34A {Brachyopsis rostratus}

Probab=99.89  E-value=4.1e-23  Score=182.34  Aligned_cols=125  Identities=18%  Similarity=0.313  Sum_probs=110.2

Q ss_pred             cCCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEE
Q psy14896         26 ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVN  105 (813)
Q Consensus        26 ~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W  105 (813)
                      ...++.+|..|+++||+|+... ++|.+|+..|+.+||+||+|+|++|++||.+++.     ..+||||.+...++.|.|
T Consensus         7 ~~~~~~~~~~~~~~CY~~~~~~-~~w~~A~~~C~~~g~~La~i~s~~e~~~l~~~~~-----~~~WIGl~~~~~~~~w~W   80 (133)
T 2zib_A            7 ALVCPAGWTLHGQRCFYSEATA-MTWDLAEANCVNKGGHLASIHSLEEQLYIKDIVA-----GIVWIGGSACKVAGAWSW   80 (133)
T ss_dssp             CCCCCTTCEEETTEEEEEEEEE-ECHHHHHHHHHHTTSEECCCCSHHHHHHHHHHCS-----SCEEEEEECCSSTTCCEE
T ss_pred             eeeCCCCEEEeCCEEEEEECCc-cCHHHHHHHHHHCCCEECccCCHHHHHHHHHhhc-----cCEEEccEecCCCCceEE
Confidence            4458999999999999999985 9999999999999999999999999999999873     679999999888999999


Q ss_pred             cCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        106 EDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       106 ~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      +||++++| .+|..++|++..+++|+.|....+.   .|.+..|.....|+|++.
T Consensus        81 ~dG~~~~y-~~W~~g~P~~~~~~~Cv~~~~~~~~---~W~d~~C~~~~~fICe~~  131 (133)
T 2zib_A           81 TDGTPVDY-RTWCPTKPNDILSDCCMQMTAAVDK---CWDDLPCPASHASICAKA  131 (133)
T ss_dssp             TTCCCCCC-CCBCTTCCCCCTTSCEEEECSSTTC---CEEEECTTCCEEEEEEEE
T ss_pred             CCCCCccc-CCcCCCCCCCCCCCCceEEecCCCC---cEeCCCCCCCeeEEEeEc
Confidence            99999987 6777779987656899999765432   466999999999999984

>2b6b_D CD209 antigen; cryo EM dengue CRD DC-SIGN, icosahedral virus, virus-recepto; 25.00A {Homo sapiens} SCOP: d.169.1.1

Probab=99.89  E-value=5.5e-23  Score=190.14  Aligned_cols=129  Identities=22%  Similarity=0.360  Sum_probs=111.3

Q ss_pred             ccccCCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCC
Q psy14896         23 DELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNL  102 (813)
Q Consensus        23 ~~~~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~  102 (813)
                      ...+..||.||..|+++||+|+... ++|.+|+..|+.+||+||+|+|++|++||..++..  ....+||||.+...++.
T Consensus        21 ~~~~~~Cp~gw~~~~~~CY~~~~~~-~tw~~A~~~C~~~g~~La~i~s~~e~~fl~~~~~~--~~~~~WIGl~~~~~~~~   97 (175)
T 2b6b_D           21 MRLCHPCPWEWTFFQGNCYFMSNSQ-RNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSR--SNRFTWMGLSDLNQEGT   97 (175)
T ss_pred             ccccCCCCcCcEEeCCEEEEEECCc-cCHHHHHHHHhhCCCEEeeeCCHHHHHHHHHHhcc--CCCcEEEeeEccCCCCc
Confidence            3456789999999999999999985 99999999999999999999999999999987632  34679999999888999


Q ss_pred             eEEcCCCCCCc--cccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        103 WVNEDGTNLNE--LDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       103 ~~W~dgs~~~~--~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      |.|.||+++.+  +.+|..++|++...++|+.|...    .  |.+..|.....|+|++.
T Consensus        98 w~W~dGs~~~~~~~~~W~~geP~~~~~~~Cv~~~~~----g--W~d~~C~~~~~fICe~~  151 (175)
T 2b6b_D           98 WQWVDGSPLLPSFKQYWNRGEPNNVGEEDCAEFSGN----G--WNDDKCNLAKFWICKKS  151 (175)
T ss_pred             EEeCCCCCcccccccCCCCCCCCCCCCCCeeEEcCC----c--eEccCCCCCeeEEEEEC
Confidence            99999999984  34666669987767899998653    2  55999999999999995

>1ukm_A EMS16 A chain, EMS16 subunit A; domain swapping, C-type lectin, toxin; HET: NAG; 1.90A {Echis multisquamatus} SCOP: d.169.1.1 PDB: 1v7p_A*

Probab=99.89  E-value=2.7e-23  Score=184.89  Aligned_cols=125  Identities=15%  Similarity=0.224  Sum_probs=107.4

Q ss_pred             CCCchhhhccCCeEEEEecCCcCCHHHHHhHccc--CCCeEeeeCCHhHHHHHHHHhhhcCC-CC-ceEEEEecc--CCC
Q psy14896         27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS--LDSDLANVNDADEHGFIMYQLFWQDP-QR-RKWYFGGTQ--QSP  100 (813)
Q Consensus        27 ~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~--~~~~L~~i~~~~e~~~i~~~~~~~~~-~~-~~w~g~~~~--~~~  100 (813)
                      ..||.||..|+++||+|+.. .++|.+|+..|+.  .||+||+|+|++|++||.+++..... .. .+||||.+.  ..+
T Consensus         2 ~~Cp~gw~~~~~~CY~~~~~-~~~w~~A~~~C~~~~~g~~La~i~s~~e~~~l~~~~~~~~~~~~~~~WIGl~~~~~~~~   80 (134)
T 1ukm_A            2 FDCPSDWTAYDQHCYLAIGE-PQNWYEAERFCTEQAKDGHLVSIQSREEGNFVAQLVSGFMHRSEIYVWIGLRDRREEQQ   80 (134)
T ss_dssp             -CCSTTCEEETTEEEEEEEE-EECHHHHHHHHHHHSTTCEECCCCSHHHHHHHHHHTGGGGGSSCCEEEEEEEECCSSSC
T ss_pred             cCCCCccEecCCEEEEEECC-CcCHHHHHHHHhhcCCCcEECccCCHHHHHHHHHHHhhhccCCCCCEEEeeecCCCCCC
Confidence            36999999999999999998 4999999999999  89999999999999999999854322 25 799999998  778


Q ss_pred             CCeEEcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        101 NLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       101 ~~~~W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      +.|.|.||+++.| .+|..++|+     +|+.|....+  ...|.+..|.....|+|+..
T Consensus        81 ~~~~W~dg~~~~~-~~W~~g~P~-----~C~~~~~~~~--~~~W~~~~C~~~~~~ICe~~  132 (134)
T 1ukm_A           81 CNPEWNDGSKIIY-VNWKEGESK-----MCQGLTKWTN--FHDWNNINCEDLYPFVCKFS  132 (134)
T ss_dssp             SCCBCTTSCBCCC-CCBCTTCCC-----CEEEEEGGGT--SCSEEEECTTSCEEEEEEEE
T ss_pred             CceEEcCcCcccc-ceECCCcCc-----cceEEEecCC--CCeeecCCCCCCceeEEeEc
Confidence            9999999999987 677777886     8999976543  14556999999999999984

>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}

Probab=99.89  E-value=3.8e-23  Score=194.08  Aligned_cols=126  Identities=21%  Similarity=0.249  Sum_probs=109.4

Q ss_pred             CCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEc
Q psy14896         27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNE  106 (813)
Q Consensus        27 ~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~  106 (813)
                      ..||.||..|+++||+|+... ++|.+|+..|+.+||+||+|+|.+|++||.+++.    ...+||||++...++.|.|+
T Consensus        47 ~~Cp~gw~~~~~~CY~~~~~~-~tw~~A~~~C~~~g~~La~i~s~~e~~~l~~~~~----~~~~WIGl~~~~~~~~w~W~  121 (182)
T 3kqg_A           47 QVVSQGWKYFKGNFYYFSLIP-KTWYSAEQFCVSRNSHLTSVTSESEQEFLYKTAG----GLIYWIGLTKAGMEGDWSWV  121 (182)
T ss_dssp             HHHTTTCEEETTEEEEECSSC-BCHHHHHHHHHHTTCEECCCCSHHHHHHHHHHHT----TCCEEEEEEECSTTCCEEET
T ss_pred             ccCCCCCEEeCCEEEEEECCC-CCHHHHHHHHHhCCCEEeeeCCHHHHHHHHHhcC----CCcEEEEeEccCCCCceEeC
Confidence            359999999999999999985 9999999999999999999999999999998872    34799999999889999999


Q ss_pred             CCCCCCc---cccccCCCCCCcc-cCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        107 DGTNLNE---LDAAFLPEPADNV-QRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       107 dgs~~~~---~~~~~~~~p~~~~-~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      ||+++.+   +.+|..++|++.. .++|+.|....   ...|.+..|.....|+|++.
T Consensus       122 dG~~~~~~~~~~~W~~geP~~~~~~~~Cv~~~~~~---~~~W~d~~C~~~~~fICe~~  176 (182)
T 3kqg_A          122 DDTPFNKVQSARFWIPGEPNNAGNNEHCGNIKAPS---LQAWNDAPCDKTFLFICKRP  176 (182)
T ss_dssp             TCCCCCHHHHTTTBCTTCCCCTTSCCCEEEECSSS---SSCEEEECTTSCBEEEEEEE
T ss_pred             CCCccccccccCCCCCCCCCCCCCCCCeeEEecCC---CCCEeCcCCCCCeeEEeccC
Confidence            9999983   3677777998754 58999986532   23556999999999999995

>1fvu_B Botrocetin beta chain; VON WILLBRAND factor modulator, C-type lectin, metal- binding, loop exchanged dimer, toxin; 1.80A {Bothrops jararaca} SCOP: d.169.1.1 PDB: 1ijk_C 1u0n_C 1u0o_B

Probab=99.89  E-value=1.3e-23  Score=184.21  Aligned_cols=122  Identities=20%  Similarity=0.300  Sum_probs=103.5

Q ss_pred             CCchhhhccCCeEEEEecCCcCCHHHHHhHccc--CCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEE
Q psy14896         28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS--LDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVN  105 (813)
Q Consensus        28 ~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~--~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W  105 (813)
                      .||.||..|+++||+|+... ++|.+|+..|+.  +||+||+|+|++|++||.+++........+||||.+...++.|.|
T Consensus         1 ~Cp~gw~~~~~~Cy~~~~~~-~~w~~A~~~C~~~~~g~~La~i~s~~e~~~l~~~~~~~~~~~~~WIGl~~~~~~~~~~W   79 (125)
T 1fvu_B            1 DCPPDWSSYEGHCYRFFKEW-MHWDDAEEFCTEQQTGAHLVSFQSKEEADFVRSLTSEMLKGDVVWIGLSDVWNKCRFEW   79 (125)
T ss_dssp             CCSTTCEEETTEEEEEEEEE-ECHHHHHHHHHHHSTTCEECCCSSHHHHHHHHTTCTTSCTTCCEECSCCCCSTTSCEEE
T ss_pred             CcCCccEEcCCEEEEEeCCC-CCHHHHHHHHhccCCCcEECccCCHHHHHHHHHHHHhcCCCCCEEEeeeecCCCCceEe
Confidence            49999999999999999984 999999999999  899999999999999999988543334689999999888899999


Q ss_pred             cCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        106 EDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       106 ~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      +||++++| .+|..++|+     +|+.|....+    .|.+..|.....|+|+..
T Consensus        80 ~dg~~~~~-~~w~~~~P~-----~C~~~~~~~g----~w~~~~C~~~~~~iCe~~  124 (125)
T 1fvu_B           80 TDGMEFDY-DDYYLIAEY-----ECVASKPTNN----KWWIIPCTRFKNFVCEFQ  124 (125)
T ss_dssp             TTSCCCCC-----CCSCC-----EEEEEETTTT----EEEEEETTSCEEEEEEEC
T ss_pred             cCCCccCc-cccCCCCCC-----CceEEECCCC----cEeCCcCCCCCcEEEeec
Confidence            99999987 677766886     8999876533    455999999999999974

>1umr_C Convulxin beta, CVX beta; lectin, C-type lectin, platelet, sugar-binding protein, activator, snake venom; 2.40A {Crotalus durissus terrificus} SCOP: d.169.1.1 PDB: 1uos_B

Probab=99.89  E-value=2.3e-23  Score=182.63  Aligned_cols=121  Identities=21%  Similarity=0.344  Sum_probs=105.8

Q ss_pred             CCCchhhhccCCeEEEEecCCcCCHHHHHhHccc--CCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeE
Q psy14896         27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS--LDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWV  104 (813)
Q Consensus        27 ~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~--~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~  104 (813)
                      ..||.||..|+++||+|+... ++|.+|+..|+.  +||+||+|+|++|++||.+++........+||||.+...++.|.
T Consensus         2 ~~Cp~gw~~~~~~CY~~~~~~-~~w~~A~~~C~~~~~g~~La~i~s~~e~~~l~~~~~~~~~~~~~WIGl~~~~~~~~~~   80 (125)
T 1umr_C            2 FCCPSHWSSYDRYCYKVFKQE-MTWADAEKFCTQQHTGSHLVSFHSTEEVDFVVKMTHQSLKSTFFWIGANNIWNKCNWQ   80 (125)
T ss_dssp             CCCCTTCEEETTEEEEEEEEE-ECHHHHHHHHHHHSTTCEECCCSSHHHHHHHHHHHHTTCSSSEEECSCCCTTTSSCEE
T ss_pred             CCCCCCCEEcCCEeEEEECCC-cCHHHHHHHHhccCCcceECccCCHHHHHHHHHHHHhcCCCCCEEEeeEeCCCCCeeE
Confidence            369999999999999999984 999999999999  89999999999999999999865433468999999988889999


Q ss_pred             EcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        105 NEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       105 W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      |+||++++| .+|. ++|      +|+.|....+    .|.+..|.....|+|++.
T Consensus        81 W~dg~~~~~-~~W~-g~P------~C~~~~~~~g----~w~~~~C~~~~~fICe~~  124 (125)
T 1umr_C           81 WSDGTKPEY-KEWH-EEF------ECLISRTFDN----QWLSAPCSDTYSFVCKFE  124 (125)
T ss_dssp             ETTSCCCSS-CCBC-CCC------EEEEEESSCS----CEEEEETTSCEEEEEEEE
T ss_pred             eCCcCccCc-ccCC-CCC------CcEEEECCCC----cEeCCCCCCCcceEEeec
Confidence            999999988 6777 776      8999876533    455999999999999974

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.89  E-value=5.9e-23  Score=199.79  Aligned_cols=169  Identities=17%  Similarity=0.198  Sum_probs=128.3

Q ss_pred             ccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCc---cEEEEeecccCCeeEEEEEEeeecCccccCcee
Q psy14896        581 NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDG---ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFF  657 (813)
Q Consensus       581 ~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~  657 (813)
                      -.++++.|.|.+....|.+.|+|+|+|.++  ....++.+..++   +|.|.+++.+|+|.|+|.|.|..|...   ..+
T Consensus        15 c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i--~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~---~~~   89 (212)
T 2r15_A           15 STAEGIQLYSFVTYYVEDLKVNWSHNGSAI--RYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQ---KTV   89 (212)
T ss_dssp             ECSSEEEEEEEBSSCCSSCEEEEEETTEEC--CCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEE---EEE
T ss_pred             EcCceEEEEEEEeccCCCceEEEEECCEEc--cCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceE---EEE
Confidence            346677888888444578999999999764  344555554443   399999999999999999999776533   234


Q ss_pred             eEEEcc--------------------CCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCc
Q psy14896        658 PLKVFP--------------------HSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA  717 (813)
Q Consensus       658 ~l~v~~--------------------~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~  717 (813)
                      .|.|..                    .|....       ..+....+.+|+.++|.|.+.|.|.|.|+|+|+|.++..+.
T Consensus        90 ~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~-------~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~  162 (212)
T 2r15_A           90 DLSGQAYDEAYAEFQRLKQAAIAEKNRARVLG-------GLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTD  162 (212)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHSCEEEE-------BCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCS
T ss_pred             EEEEeeccchhhhccccCcccccccCCCcccc-------cCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCC
Confidence            444432                    111111       01222567899999999999999999999999999998766


Q ss_pred             eeeec-----ceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcC
Q psy14896        718 YFENF-----NRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAE  761 (813)
Q Consensus       718 ~~~~~-----~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~  761 (813)
                      ++...     ...|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..|
T Consensus       163 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P  211 (212)
T 2r15_A          163 HCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP  211 (212)
T ss_dssp             SEEEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             CEEEEEcCCCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEEcc
Confidence            44322     348999999999999999999999999999999999754

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.89  E-value=1.1e-24  Score=229.23  Aligned_cols=200  Identities=13%  Similarity=0.106  Sum_probs=155.7

Q ss_pred             CCceEEEEEEcCceeEEeecEEEEEeecccccccCCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEE
Q psy14896        541 DRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFV  620 (813)
Q Consensus       541 d~G~Y~C~a~n~~g~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~  620 (813)
                      +.|.|+|.+.+....     +.+.+-.+|.+...+....+.+|+.++|.|.+ .|.|.+.+.|++++....... .+...
T Consensus       136 ~~~~~~C~~~~~l~~-----l~~~~c~~P~i~~~~~~~~v~~G~~v~L~C~~-~g~p~p~i~W~~~~~~~~~~~-~~~~~  208 (347)
T 2ifg_A          136 PEQKLQCHGQGPLAH-----MPNASCGVPTLKVQVPNASVDVGDDVLLRCQV-EGRGLEQAGWILTELEQSATV-MKSGG  208 (347)
T ss_dssp             GGGCCCCSSSSCSSC-----CCCTTCCCCEEEEECCSSCCBTTCCEEEEEEE-ECSSCCCCCEEESCCCSSEEE-CCCCC
T ss_pred             cccCCCCCCChHHhc-----CCcccCCCCceeccCCceEEeCCCcEEEEEEE-ecCCCCEEEEEcCCceeeccc-cccee
Confidence            568999988773221     12222345566666667788999999999999 799999999999986532221 12223


Q ss_pred             eeCccEEEEeecccCCe-eEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCC
Q psy14896        621 SYDGALYFSALEQIDAG-NYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGY  699 (813)
Q Consensus       621 ~~~~~L~i~~~~~~d~G-~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~  699 (813)
                      ..+++|.|.+++.+|+| .|+|.|.|..|...   ..+.|.|..+|.+ ..           ..+.+|+.++|.|.+.|.
T Consensus       209 ~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~---~~~~l~V~~~P~i-~~-----------~~~~~g~~v~l~C~~~g~  273 (347)
T 2ifg_A          209 LPSLGLTLANVTSDLNRKNVTCWAENDVGRAE---VSVQVNVSFPASV-QL-----------HTAVEMHHWCIPFSVDGQ  273 (347)
T ss_dssp             SSEEEEEEESCCSTTTTCCEEECCEETTEECC---EEECCCCBEEEEE-EE-----------CCCEESSSEEEEEEEEEE
T ss_pred             cccceEEEeeCChHHCCCeEEEEEEcCCCCEE---EEEEEEEcCCCee-ee-----------ccCccCceEEEEEEeeec
Confidence            45567999999999999 99999999987653   3467777777754 11           335679999999999999


Q ss_pred             CCCeEEEEeCCcccCCCceee-----------ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCC
Q psy14896        700 PVPSYNWTRRGSPLPRNAYFE-----------NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEP  762 (813)
Q Consensus       700 P~p~i~W~k~g~~l~~~~~~~-----------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P  762 (813)
                      |.|.|+|+|+|..+..+....           ...++|+|.+++.+|+|.|+|+|.|..|.+++++.|.|.++|
T Consensus       274 P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P  347 (347)
T 2ifg_A          274 PAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP  347 (347)
T ss_dssp             SCCEEEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCCCC
T ss_pred             CCCcEEEEeCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEecCCC
Confidence            999999999999988654322           125679999999999999999999999999999999999887

>1sl6_A C-type lectin DC-signr; sugar binding protein; HET: GAL NDG FUC; 2.25A {Homo sapiens} SCOP: d.169.1.1 PDB: 1xar_A

Probab=99.89  E-value=7e-23  Score=191.56  Aligned_cols=127  Identities=21%  Similarity=0.387  Sum_probs=110.4

Q ss_pred             ccCCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeE
Q psy14896         25 LELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWV  104 (813)
Q Consensus        25 ~~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~  104 (813)
                      .+..||.||..|+++||+|+... ++|.+|+..|+.+||+||+|+|.+|++||..++..  ....+||||++...++.|.
T Consensus        49 ~~~~Cp~gw~~~~~~CY~~~~~~-~tw~~A~~~C~~~g~~La~i~s~~e~~fl~~~~~~--~~~~~WIGl~~~~~~~~w~  125 (184)
T 1sl6_A           49 LCRHCPKDWTFFQGNCYFMSNSQ-RNWHDSVTACQEVRAQLVVIKTAEEQNFLQLQTSR--SNRFSWMGLSDLNQEGTWQ  125 (184)
T ss_dssp             TCCBCCTTCEEETTEEEEECSSC-BCHHHHHHHHHTTTCEECCCCSHHHHHHHHHHHHH--TTCCEEEEEECCSSTTCCE
T ss_pred             cCCCCCCCcEEECCEEEEEECCC-CCHHHHHHHHHhcCCEEEEeCCHHHHHHHHHHhcc--CCccEEEEEEccCCCCCeE
Confidence            45689999999999999999985 99999999999999999999999999999987643  3467999999988899999


Q ss_pred             EcCCCCCCc--cccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        105 NEDGTNLNE--LDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       105 W~dgs~~~~--~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      |+||+++.+  +.+|..++|++...++|+.|...    .  |.+..|.....|+|++.
T Consensus       126 W~DGs~~~~~~~~~W~~geP~~~~~~~Cv~~~~~----g--W~d~~C~~~~~fICe~~  177 (184)
T 1sl6_A          126 WVDGSPLSPSFQRYWNSGEPNNSGNEDCAEFSGS----G--WNDNRCDVDNYWICKKP  177 (184)
T ss_dssp             ETTSCBCCGGGGGGBCTTCCCCTTSCCEEEEETT----E--EEEECTTSCBEEEEEEE
T ss_pred             ecCCCccCCcccCCCCCCCCCCCCCCCceEEeCC----c--EEccCCCCCeeEEEeEC
Confidence            999999985  34666669987777899999652    2  55999999999999985

>1fvu_A Botrocetin alpha chain; VON WILLBRAND factor modulator, C-type lectin, metal- binding, loop exchanged dimer, toxin; 1.80A {Bothrops jararaca} SCOP: d.169.1.1 PDB: 1ijk_B 1u0n_B 1u0o_A

Probab=99.89  E-value=2.2e-23  Score=185.11  Aligned_cols=124  Identities=15%  Similarity=0.271  Sum_probs=108.3

Q ss_pred             CCchhhhccCCeEEEEecCCcCCHHHHHhHccc--CCCeEeeeCCHh-HHHHHHHHhhhcCC--CCceEEEEe--ccCCC
Q psy14896         28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS--LDSDLANVNDAD-EHGFIMYQLFWQDP--QRRKWYFGG--TQQSP  100 (813)
Q Consensus        28 ~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~--~~~~L~~i~~~~-e~~~i~~~~~~~~~--~~~~w~g~~--~~~~~  100 (813)
                      .||.||..|+++||+|+... ++|.+|+..|+.  .||+||+|++++ |++||.+++.....  ...+||||.  +...+
T Consensus         1 ~Cp~gw~~~~~~CY~~~~~~-~tw~~A~~~C~~~~~g~~La~i~s~~~e~~~l~~~~~~~~~~~~~~~WIGl~~~~~~~~   79 (133)
T 1fvu_A            1 DCPSGWSSYEGNCYKFFQQK-MNWADAERFCSEQAKGGHLVSIKIYSKEKDFVGDLVTKNIQSSDLYAWIGLRVENKEKQ   79 (133)
T ss_dssp             CCCTTCEEETTEEEEEEEEE-ECHHHHHHHHHHHSTTCEECCCCTTSTHHHHHHHHHHHHCCSSCCEEEEEEEECCSSSS
T ss_pred             CcCCCcEEcCCeeEEEECCC-cCHHHHHHHHhccCCCcEEeeecChHHHHHHHHHHHhhccccCCCCEEEeeecccCCCC
Confidence            49999999999999999984 999999999999  799999999999 99999999865443  468999999  88788


Q ss_pred             CCeEEcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        101 NLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       101 ~~~~W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      +.|.|.||++++| .+|.. +|+    ++|+.|....+  ...|.+..|.....|+|++.
T Consensus        80 ~~w~W~dg~~~~~-~~W~~-~P~----~~C~~~~~~~~--~~~w~~~~C~~~~~fICe~~  131 (133)
T 1fvu_A           80 CSSEWSDGSSVSY-ENVVE-RTV----KKCFALEKDLG--FVLWINLYCAQKNPFVCKSP  131 (133)
T ss_dssp             SCCBCTTSCBCCC-CCBCG-GGC----CCEEEEETTTT--SCSEEEECTTCCEEEEEEEC
T ss_pred             CccEeCCCCcccc-cCccc-CCC----CCcEEEEecCC--CCeEecCCCCCCCCEEeeec
Confidence            9999999999987 67777 776    89999976543  14556999999999999985

>1egg_A Macrophage mannose receptor; C-type lectin, sugar binding protein; 2.30A {Homo sapiens} SCOP: d.169.1.1 PDB: 1egi_A

Probab=99.89  E-value=3.7e-23  Score=187.35  Aligned_cols=129  Identities=16%  Similarity=0.281  Sum_probs=106.8

Q ss_pred             CCCchhh--hccCCeEEEEec----CCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCC-CCceEEEEeccCC
Q psy14896         27 LRCPQHW--VQYRDSCYRFVK----SPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDP-QRRKWYFGGTQQS   99 (813)
Q Consensus        27 ~~Cp~~w--~~~~~~Cy~~~~----~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~-~~~~w~g~~~~~~   99 (813)
                      ..||.||  ..|+++||+|+.    . .++|.+|+..|+.+||+||+|++++|++||.+++..... ...+||||.+...
T Consensus         3 ~~Cp~gw~~~~~~~~CY~~~~~~~~~-~~~w~~A~~~C~~~g~~La~i~s~~e~~~l~~~~~~~~~~~~~~WIGl~~~~~   81 (147)
T 1egg_A            3 PKCPEDWGASSRTSLCFKLYAKGKHE-KKTWFESRDFCRALGGDLASINNKEEQQTIWRLITASGSYHKLFWLGLTYGSP   81 (147)
T ss_dssp             --CCTTCEECSSSSCEEEEECSCGGG-CBCHHHHHHHHHTTTCEECCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECC--
T ss_pred             CCCCCCCccccCCCEEEEEeccCCcc-ccCHHHHHHHHHHcCCEECccCCHHHHHHHHHHHHhccCCCCcEEEeeecCCC
Confidence            4699999  999999999998    7 499999999999999999999999999999998865432 3689999999888


Q ss_pred             CCCeEEcCCCCCCccccccCCCCCCc-ccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        100 PNLWVNEDGTNLNELDAAFLPEPADN-VQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       100 ~~~~~W~dgs~~~~~~~~~~~~p~~~-~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      ++.|.|.||+++.| .+|..++|++. ..++|+.|.....   ..|.+..|.....|+|+..
T Consensus        82 ~~~w~W~dg~~~~~-~~W~~g~P~~~~~~~~Cv~~~~~~~---~~W~d~~C~~~~~fICe~~  139 (147)
T 1egg_A           82 SEGFTWSDGSPVSY-ENWAYGEPNNYQNVEYCGELKGDPT---MSWNDINCEHLNNWICQIQ  139 (147)
T ss_dssp             --CCCCTTSCCCCC-CCCCTTCSCGGGSCCEEEEEECSTT---CCEEEEETTSCBEEEEECC
T ss_pred             CCcEEecCCCCccc-CccCCCCCCCCCCCCCCeEECCCCC---CceeccCCCCCccEEeeCC
Confidence            89999999999988 67777799864 4689999976522   3455999999999999995

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.89  E-value=2.1e-22  Score=193.32  Aligned_cols=180  Identities=19%  Similarity=0.281  Sum_probs=139.5

Q ss_pred             CCCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe---eCC--eEEEcC
Q psy14896        188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL---SGG--NLIIND  262 (813)
Q Consensus       188 ~~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~---~~~--~l~i~~  262 (813)
                      .+|.|+..|.+..+.+|     +++.|.|.+.|.|.+.+.|||+|..+.         ..+.++..   .++  +|.|.+
T Consensus         3 ~~P~~~~~~~~~~v~~G-----~~v~l~C~~~~~p~~~v~W~~~~~~~~---------~~~~~~~~~~~~~~~~~L~i~~   68 (197)
T 2j8h_A            3 MAPHFKEELRNLNVRYQ-----SNATLVCKVTGHPKPIVKWYRQGKEII---------ADGLKYRIQEFKGGYHQLIIAS   68 (197)
T ss_dssp             CCCEEEECCCCEEEETT-----SCEEEEEEEECSSCCEEEEEETTEECC---------CCSSSEEEEEETTTEEEEEECS
T ss_pred             CCCEEEEcCCccEEcCC-----CEEEEEEEEeecCCCEEEEEECCEECc---------cCCCcEEEEEcCCCEEEEEECc
Confidence            47899999999998887     669999999999999999999998763         22233332   233  688877


Q ss_pred             CccccCCeeEEEEeecCceeeEeeeeEEeeeeecccccCC-----CCceeecCCCeEEEecCCCCCCcceEEEeeccccc
Q psy14896        263 PRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKR-----APEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPN  337 (813)
Q Consensus       263 ~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~-----~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~  337 (813)
                      . +.+|+|.|+|.|.|..|.. +..+.|.|..+|.+....     ....+.+|+.++|.|.+ .|.|.+.+.|+|++.++
T Consensus        69 ~-~~~d~G~Y~C~~~n~~g~~-~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~i~W~~~~~~~  145 (197)
T 2j8h_A           69 V-TDDDATVYQVRATNQGGSV-SGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF-SGKPDPVITWQKGQDLI  145 (197)
T ss_dssp             C-CGGGCSEEEEEEEETTEEE-EEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEE-EEESCCEEEEEESSCEE
T ss_pred             C-CHHhCEEEEEEEEECCCce-eEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEE-EecCCCcEEEEECCEEe
Confidence            5 8999999999999999886 778888888776654332     23456779999999996 68899999999999875


Q ss_pred             cccCCccEEEcc---CccEEEee-eeecCCeeeEEEEeeeccccCCCCCceeeEEc
Q psy14896        338 FVEEDKRVFVSY---DGALYFSA-LEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF  389 (813)
Q Consensus       338 ~~~~~~~~~~~~---~~~L~i~~-v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~  389 (813)
                      .  ...++.+..   .++|.|.+ +..+|+|.|+|.|.|..|....   .+.|.|.
T Consensus       146 ~--~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~---~~~l~V~  196 (197)
T 2j8h_A          146 D--NNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQK---TVELDVA  196 (197)
T ss_dssp             C--SSSSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEE---EEEEEEE
T ss_pred             e--cCCCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeE---EEEEEEe
Confidence            4  334444332   34899999 9999999999999999886432   3666653

>1j34_B Coagulation factor IX-binding protein B chain; magnesium ION, calcium ION, GLA domain, protein binding/blood clotting complex; HET: CGU; 1.55A {Trimeresurus flavoviridis} SCOP: d.169.1.1 PDB: 1bj3_B 1ixx_B* 1j35_B* 1x2t_B* 1x2w_B 1wt9_B 1iod_B 1y17_B

Probab=99.89  E-value=1.9e-23  Score=182.58  Aligned_cols=120  Identities=19%  Similarity=0.347  Sum_probs=104.9

Q ss_pred             CCchhhhccCCeEEEEecCCcCCHHHHHhHccc--CCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEE
Q psy14896         28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS--LDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVN  105 (813)
Q Consensus        28 ~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~--~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W  105 (813)
                      .||.||..|+++||+++... ++|.+|+..|+.  +||+||+|+|++|++||.+++........+||||.+...++.|.|
T Consensus         1 ~Cp~gw~~~~~~CY~~~~~~-~~w~~A~~~C~~~~~g~~La~i~s~~e~~~l~~~~~~~~~~~~~WIGl~~~~~~~~~~W   79 (123)
T 1j34_B            1 DCPSDWSSYEGHCYKPFSEP-KNWADAENFCTQQHAGGHLVSFQSSEEADFVVKLAFQTFGHSIFWMGLSNVWNQCNWQW   79 (123)
T ss_dssp             CCCTTSEEETTEEEEEEEEE-ECHHHHHHHHHHHSTTCEECCCSSHHHHHHHHHHHHHHHCSCEEECSCCSCSTTSCEEE
T ss_pred             CcCCcccccCCEEEEEECCC-cCHHHHHHHHhccCCCcEEcccCCHHHHHHHHHHHHhcCCCCCEEEeeEcCCCCCeeEe
Confidence            49999999999999999984 999999999999  899999999999999999988543224689999999888899999


Q ss_pred             cCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        106 EDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       106 ~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      +||++++| .+|. ++|      +|+.|....+  .  |.+..|.....|+|++.
T Consensus        80 ~dg~~~~~-~~W~-g~P------~C~~~~~~~g--~--w~~~~C~~~~~~iCe~~  122 (123)
T 1j34_B           80 SNAAMLRY-KAWA-EES------YCVYFKSTNN--K--WRSRACRMMAQFVCEFQ  122 (123)
T ss_dssp             TTCCCCCC-CCBS-CSC------EEEEEETTSC--C--BEEEETTSCEEEEEEEE
T ss_pred             CCCCCcCc-cCcC-CCC------CcEEEECCCC--C--CcCCCCCCCCcEEEeec
Confidence            99999987 6777 776      8999876543  4  45999999999999974

>2vuv_A Codakine; sugar-binding protein, C-type, lectin, mannose, invertebrate; HET: CIT; 1.3A {Codakia orbicularis} PDB: 2vuz_A*

Probab=99.89  E-value=3.7e-23  Score=182.33  Aligned_cols=123  Identities=20%  Similarity=0.369  Sum_probs=106.7

Q ss_pred             CCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCce--EEEEeccCCCCCeEE
Q psy14896         28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRK--WYFGGTQQSPNLWVN  105 (813)
Q Consensus        28 ~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~--w~g~~~~~~~~~~~W  105 (813)
                      .||.||..|+++||+|+... ++|.+|+..|+.+||+||+|++++|++||.+++........+  |||  +...++.|.|
T Consensus         1 ~Cp~gw~~~~~~CY~~~~~~-~~w~~A~~~C~~~g~~La~i~s~~e~~~l~~~~~~~~~~~~~~~WiG--~~~~~~~~~W   77 (129)
T 2vuv_A            1 GCPDGWTQFLDLCYIYQSAK-ASWASAQSSCQALGGILAEPDTACENEVLIHMCKENGDAGSFGPWLG--GQKVGGAWQW   77 (129)
T ss_dssp             CCCTTCEEETTEEEEEEEEE-ECHHHHHHHHHHTTSEECCCCSHHHHHHHHHHHHHTTCCSSSCCEEE--EEEETTEEEE
T ss_pred             CCCcchhhhCCEEEEEECCC-cCHHHHHHHHHhcCCEECccCCHHHHHHHHHHHHhccCCCCcccccC--CCCCCCeEEE
Confidence            49999999999999999984 999999999999999999999999999999998654334567  999  5667889999


Q ss_pred             cC-CCCCCccccccCCCCCCc-ccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        106 ED-GTNLNELDAAFLPEPADN-VQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       106 ~d-gs~~~~~~~~~~~~p~~~-~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      .| |++++| .+|..++|++. +.++|+.|....      |.+..|.....|+|++.
T Consensus        78 ~d~g~~~~~-~~W~~~~P~~~~~~~~C~~~~~~~------w~~~~C~~~~~~ICe~~  127 (129)
T 2vuv_A           78 SSSGAAFDY-LRWGPNEPNNSGGNEDCLHYNWLS------WNDLRCHYQASYLCQRA  127 (129)
T ss_dssp             TTTCCBCSS-CCBCTTCSCCTTSCCCEEEEETTE------EEEECTTSCEEEEEEEE
T ss_pred             cCCCCcccc-CCcCCCCCCCCCCCCCccEEcCCc------ccCCCCCCCcceEeeec
Confidence            99 999987 67777799874 478999996642      66999999999999984

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.89  E-value=8.6e-23  Score=201.63  Aligned_cols=184  Identities=18%  Similarity=0.254  Sum_probs=138.3

Q ss_pred             CCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCC--eEEEeeCccEEEEeecccCCeeEEEEEEeeecCcccc
Q psy14896        576 APEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDK--RVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRN  653 (813)
Q Consensus       576 ~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~--~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~  653 (813)
                      ....+.+|+.++|.|.+ .+.|.+.|+|+|++.++......  ......+++|.|.+++.+|+|.|+|.|.|..|...  
T Consensus        27 ~~~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~--  103 (231)
T 3ojm_B           27 RLHAVPAANTVKFRCPA-GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSIN--  103 (231)
T ss_dssp             SCEEEETTSCEEEECCE-EEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEE--
T ss_pred             eeEEEccCCCEEEEEec-ccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEEEEecccCccc--
Confidence            56678899999999999 68899999999999764332221  13334455799999999999999999999887543  


Q ss_pred             CceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEe----CCcccCCCcee----------
Q psy14896        654 GPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTR----RGSPLPRNAYF----------  719 (813)
Q Consensus       654 ~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k----~g~~l~~~~~~----------  719 (813)
                       ..+.|.|...+........   .......+.+|+.++|.|.+.|.|.|.++|+|    +|..+..+...          
T Consensus       104 -~~~~l~V~~~~~~~p~~~~---~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~  179 (231)
T 3ojm_B          104 -HTYHLDVVERSRHRPILQA---GLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGI  179 (231)
T ss_dssp             -EEEEEEEECCCCCCCEECT---TCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECST
T ss_pred             -ccEEEEEEcCCCCCCceee---ccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeEeccccc
Confidence             3467777765432211110   11223567899999999999999999999999    88777544311          


Q ss_pred             -eecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCCcccc
Q psy14896        720 -ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTI  766 (813)
Q Consensus       720 -~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~~~~  766 (813)
                       ....++|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..+|..+.
T Consensus       180 ~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~p~  227 (231)
T 3ojm_B          180 NSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPG  227 (231)
T ss_dssp             TCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC----
T ss_pred             ccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEecCCCCCc
Confidence             12245799999999999999999999999999999999999887653

>3ubu_B Agglucetin subunit beta-2; platelet inhibiting, agkisacucetin, dimer, toxin, C-type LEC GPIB inhibitor, GPIB binding; 1.91A {Deinagkistrodon acutus}

Probab=99.89  E-value=5.1e-23  Score=180.88  Aligned_cols=122  Identities=21%  Similarity=0.292  Sum_probs=105.7

Q ss_pred             CCCchhhhccCCeEEEEecCCcCCHHHHHhHccc--CCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeE
Q psy14896         27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS--LDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWV  104 (813)
Q Consensus        27 ~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~--~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~  104 (813)
                      ..||.||..|+++||+++.. .++|.+|+..|+.  +||+||+|+|++|++||..++........+||||.+...++.|.
T Consensus         2 ~~Cp~gw~~~~~~CY~~~~~-~~tw~~A~~~C~~~~~g~~La~i~s~~e~~~l~~~~~~~~~~~~~WIGl~~~~~~~~~~   80 (126)
T 3ubu_B            2 FCCPLRWSAYEGHCYLVVKE-KKTWDDAEKFCTEQRKGGHLVSVHSREEADFLVHLAYPILDLSLIWMGLSNMWNDCKRE   80 (126)
T ss_dssp             CSCCTTCEEETTEEEEEEEE-EECHHHHHHHHHHHSTTCEECCCCSHHHHHHHHHHHHHHHCSCEEEEEEECTTTSSEEE
T ss_pred             CCCCCCCeEcCCEeEEEeCC-CCCHHHHHHHHhccCCCcEECccCCHHHHHHHHHHHhhccCCCcEEEeEEcCCCCCceE
Confidence            36999999999999999998 4999999999999  99999999999999999999865433458999999988889999


Q ss_pred             EcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        105 NEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       105 W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      |+||++++| .+|..       .++|+.|....+   ..|.+..|.....|+|+++
T Consensus        81 W~dg~~~~~-~~W~~-------~~~Cv~~~~~~~---~~W~~~~C~~~~~fICe~~  125 (126)
T 3ubu_B           81 WSDGTKLDF-KSWAK-------TSDCLIGKTDGD---NQWLNMDCSKKHYFVCKFK  125 (126)
T ss_dssp             ETTCCCCCC-CCBCC-------CCCEEEEESSTT---CCEEEECTTSCEEEEEEEE
T ss_pred             ecCCCeeee-eccCC-------CCCeEEEecCCC---CcCcCCCCCCCceeEEeee
Confidence            999999987 56533       579999976543   3455999999999999984

>3bdw_A Natural killer cells antigen CD94; NK cells, receptor, glycoprotein, lectin, signal-A transmembrane, immune system receptor; 2.50A {Homo sapiens} SCOP: d.169.1.1 PDB: 3cdg_J 1b6e_A 3cii_G

Probab=99.89  E-value=1.2e-23  Score=183.57  Aligned_cols=120  Identities=23%  Similarity=0.379  Sum_probs=103.7

Q ss_pred             cCCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEE
Q psy14896         26 ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVN  105 (813)
Q Consensus        26 ~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W  105 (813)
                      +..||.||..|+++||+|+... ++|.+|+..|+.+||+||+|+|++|++||.++      ...+||||.+...++.|.|
T Consensus         2 c~~Cp~gw~~~~~~CY~~~~~~-~~w~~A~~~C~~~g~~La~i~s~~e~~~l~~~------~~~~WIGl~~~~~~~~w~W   74 (123)
T 3bdw_A            2 CCSCQEKWVGYRCNCYFISSEQ-KTWNESRHLCASQKSSLLQLQNTDELDFMSSS------QQFYWIGLSYSEEHTAWLW   74 (123)
T ss_dssp             CCCCTTTCEEETTEEEEECSSC-BCHHHHHHHHHHTTCEECCCSCGGGGGGGTTC------CCCEECSEEEETTTTEEEE
T ss_pred             CCCCCCCceEECCEEEEEeCCC-CCHHHHHHHHHHCCCeeEEECCHHHHHHHHhC------cCCEEeeeecCCCCCcEEe
Confidence            5679999999999999999995 99999999999999999999999999999764      4579999999988999999


Q ss_pred             cCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        106 EDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       106 ~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      .||+++.+ .+|...+|.  ..++|+.|...     ..|.+..|.....|+|+..
T Consensus        75 ~dg~~~~~-~~w~~~~~~--~~~~C~~~~~~-----~~w~d~~C~~~~~fICe~~  121 (123)
T 3bdw_A           75 ENGSALSQ-YLFPSFETF--NTKNCIAYNPN-----GNALDESCEDKNRYICKQQ  121 (123)
T ss_dssp             TTSCBCCT-TTSGGGGGC--CTTSEEEEETT-----TEEEEECTTSCBEEEEEEC
T ss_pred             eCCCcCCc-ccccccCCC--CCCCCcEEcCC-----CcEEccCCCCCCeeeEeEe
Confidence            99999997 466555654  36899998642     2355999999999999984

>1c3a_B Flavocetin-A: beta subunit; C-type lectin-like domains, membrane protein; 2.50A {Trimeresurus flavoviridis} SCOP: d.169.1.1 PDB: 1v4l_B

Probab=99.89  E-value=2.2e-23  Score=182.69  Aligned_cols=121  Identities=18%  Similarity=0.282  Sum_probs=105.4

Q ss_pred             CCCchhhhccCCeEEEEecCCcCCHHHHHhHccc--CCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeE
Q psy14896         27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS--LDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWV  104 (813)
Q Consensus        27 ~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~--~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~  104 (813)
                      ..||.||..|+++||+|+.. .++|.+|+..|+.  +||+||+|+|++|++||.+++........+||||.+...++.|.
T Consensus         2 ~~Cp~gw~~~~~~CY~~~~~-~~~w~~A~~~C~~~~~g~~La~i~s~~e~~~l~~~~~~~~~~~~~WIGl~~~~~~~~~~   80 (125)
T 1c3a_B            2 FCCPLGWSSYDEHCYQVFQQ-KMNWEDAEKFCTQQHKGSHLVSFHSSEEVDFVTSKTFPILKYDFVWIGLSNVWNECTKE   80 (125)
T ss_dssp             CCCCTTCEEETTEEEEEEEE-EECHHHHHHHHHHHSTTCEECCCSSHHHHHHHHHHHHHHHCSCEEECSCCCTTTSSCEE
T ss_pred             CCCCCcceecCCEEEEEECC-CCCHHHHHHHhhccCCCcEECccCCHHHHHHHHHHHHhcCCCCCEEEeeEcCCCCCceE
Confidence            36999999999999999998 4999999999999  89999999999999999998854323468999999988889999


Q ss_pred             EcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        105 NEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       105 W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      |.||++++| .+|. ++|      +|+.|....+    .|.+..|.....|+|++.
T Consensus        81 W~dg~~~~~-~~w~-~~P------~C~~~~~~~g----~w~~~~C~~~~~fiCe~~  124 (125)
T 1c3a_B           81 WSDGTKLDY-KAWS-GGS------DCIVSKTTDN----QWLSMDCSSKYYVVCKFQ  124 (125)
T ss_dssp             ETTCCCCCS-CCBC-CCC------EEEEEESSSS----CEEEEETTSCEEEEEEEE
T ss_pred             eCCCCcccc-cccC-CCC------CcEEEECCCC----CEeCCCCCCCCeeEEeee
Confidence            999999987 6777 776      8999876543    445999999999999974

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.89  E-value=1e-22  Score=198.33  Aligned_cols=174  Identities=17%  Similarity=0.285  Sum_probs=134.4

Q ss_pred             CceeccCCCceEEeCCCCCCC----ccEEEEccCCCCC--------------cc-----cCCCeEEEee------CccEE
Q psy14896        577 PEIGNQNWGKAMFCDPPTNYP----GVNYYWARDYFPN--------------FV-----EEDKRVFVSY------DGALY  627 (813)
Q Consensus       577 ~~~~~~g~~~~l~C~~~~~~p----~~~v~W~k~~~~~--------------~~-----~~~~~~~~~~------~~~L~  627 (813)
                      ...+.+|+.++|.|.+ .+.|    .+.|.|+|++...              ..     ....|+.+..      +++|.
T Consensus         9 ~v~v~~G~~v~L~C~~-~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~   87 (214)
T 3jz7_A            9 RIEKAKGETAYLPCKF-TLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASIN   87 (214)
T ss_dssp             EEEEETTSCEEECCBC-CCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCEE
T ss_pred             eEEEecCCCEEEEEEE-ecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccEE
Confidence            4567889999999999 5555    4699999843211              01     1134555543      46799


Q ss_pred             EEeecccCCeeEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEe-cCCCCCeEEE
Q psy14896        628 FSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVA-FGYPVPSYNW  706 (813)
Q Consensus       628 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~-~g~P~p~i~W  706 (813)
                      |.+++.+|+|.|+|.|.|..|..   ...+.|.|..+|......        ....+.+|+.++|.|.+ .|.|.|.|+|
T Consensus        88 i~~v~~~D~G~Y~C~~~~~~~~~---~~~~~l~V~~~p~~~~~~--------~~~~~~~g~~v~l~C~~~~g~p~~~v~W  156 (214)
T 3jz7_A           88 VTNLQLSDIGTYQCKVKKAPGVA---NKKFLLTVLVKPSGTRCF--------VDGSEEIGNDFKLKCEPKEGSLPLQFEW  156 (214)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEE---EEEEEEEEECCCBSCEEE--------EESCCBTTCCEEEEEECSBCCSSCEEEE
T ss_pred             EccCChhhCeEEEEEEEeCCCcc---ccEEEEEEEcCCCCceee--------eecceecCCcEEEEecCCCCCCCCEEEE
Confidence            99999999999999999987654   345788898887654431        11347899999999999 7999999999


Q ss_pred             EeCC--cccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCC
Q psy14896        707 TRRG--SPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEP  762 (813)
Q Consensus       707 ~k~g--~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P  762 (813)
                      +|++  ..+.........+..|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..||
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P~  214 (214)
T 3jz7_A          157 QKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPPS  214 (214)
T ss_dssp             EECSTTCCCCGGGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCBCCC
T ss_pred             EECCCCCccCccceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEeCCC
Confidence            9954  4444444444456799999999999999999999999999999999998665

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.89  E-value=3e-22  Score=191.84  Aligned_cols=185  Identities=16%  Similarity=0.215  Sum_probs=141.5

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeec-cCCCCeEEEeecccccccccc--cccccCCCc-cEEeeCCeEEEcCCc
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAG-GYPNPSYEWFKEDYVQDRLVA--NLIDPLSDK-RFTLSGGNLIINDPR  264 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~-g~P~p~v~W~k~g~~l~~~~~--~~~~~~~~~-~~~~~~~~l~i~~~~  264 (813)
                      +|.|+..|.+..+.+|     +++.|.|.+. |.|.+.|.|+|+|..+.....  ..+....+. .....+++|.|.+. 
T Consensus         2 ~~~~~~~p~~~~v~~G-----~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-   75 (195)
T 2c5d_C            2 ESPFVGNPGNITGARG-----LTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSL-   75 (195)
T ss_dssp             CCSEEECCCCEEECTT-----CCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSC-
T ss_pred             CCeeccChhheEEecC-----CcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEec-
Confidence            6889999999999888     6699999999 999999999999987643210  001000000 00001356888875 


Q ss_pred             cccCCeeEEEEeecCceeeEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCcc-eEEEeeccccccccCCc
Q psy14896        265 QVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGV-NYYWARDYFPNFVEEDK  343 (813)
Q Consensus       265 ~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~-~v~W~k~~~~~~~~~~~  343 (813)
                      +.+|+|.|+|.|.|..|...+..+.|.|..+|.+...+....+.+|+.++|.|.+ .|.|.+ ++.|+|++.++......
T Consensus        76 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~~v~W~~~~~~~~~~~~~  154 (195)
T 2c5d_C           76 QLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQA-QGPPEPVDLLWLQDAVPLATAPGH  154 (195)
T ss_dssp             CSTTCEEEEEEEEETTEEEECCCEEEEECCSCEEEECCCCEEECTTCCEEEEEEE-ECSSCCCEEEEEESSCBSSSSTTS
T ss_pred             cccCCcEEEEEEEeCCCceecccEEEEEecCCeEEcCCCcEEEcCCCEEEEEeEC-CCCCCCCEEEEEECCEeccCCCCc
Confidence            8999999999999998887677799999888877777777788899999999996 778999 99999999885433221


Q ss_pred             cEEEccCccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEE
Q psy14896        344 RVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKV  388 (813)
Q Consensus       344 ~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v  388 (813)
                          ..++.|.|.+++  |+|.|+|.|.|..|...  +..+.|.|
T Consensus       155 ----~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~--s~~~~l~V  191 (195)
T 2c5d_C          155 ----GPQRSLHVPGLN--KTSSFSCEAHNAKGVTT--SRTATITV  191 (195)
T ss_dssp             ----SCCEEEEECCCS--SCEEEEEEEEETTEEEE--CCCEEEEE
T ss_pred             ----CCCCeEEEcccc--cCceEEEEEEcCCCceE--EEEEEEEE
Confidence                456689999987  89999999999987542  23477777

>1c3a_A Flavocetin-A: alpha subunit; C-type lectin-like domains, membrane protein; 2.50A {Trimeresurus flavoviridis} SCOP: d.169.1.1 PDB: 1v4l_A

Probab=99.89  E-value=4.3e-23  Score=183.80  Aligned_cols=125  Identities=16%  Similarity=0.199  Sum_probs=107.4

Q ss_pred             CCCchhhhccCCeEEEEecCCcCCHHHHHhHccc--CCCeEeeeCCHhHHHHHHHHhhhcCC-CC-ceEEEEe--ccCCC
Q psy14896         27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS--LDSDLANVNDADEHGFIMYQLFWQDP-QR-RKWYFGG--TQQSP  100 (813)
Q Consensus        27 ~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~--~~~~L~~i~~~~e~~~i~~~~~~~~~-~~-~~w~g~~--~~~~~  100 (813)
                      ..||.||..|+++||+|+... ++|.+|+..|+.  +||+||+|+|++|++||.+++..... .. .+||||.  +...+
T Consensus         2 ~~Cp~gw~~~~~~CY~~~~~~-~~w~~A~~~C~~~~~g~~La~i~s~~e~~~l~~~~~~~~~~~~~~~WIGl~~~~~~~~   80 (135)
T 1c3a_A            2 FDCIPGWSAYDRYCYQAFSKP-KNWEDAESFCEEGVKTSHLVSIESSGEGDFVAQLVAEKIKTSFQYVWIGLRIQNKEQQ   80 (135)
T ss_dssp             CCCCTTCEEETTEEEEEEEEE-ECHHHHHHHHHHHSTTCEECCCCSHHHHHHHHHHHHHHCCSCCSEEEEEEEECCCSSS
T ss_pred             cCCCCcCEecCCeeEEEeCCC-cCHHHHHHHHhhcCCCCEECeeCCHHHHHHHHHHHhhccccCCCcEEecccccCCCCC
Confidence            369999999999999999984 999999999999  99999999999999999999865432 24 7999999  88788


Q ss_pred             CCeEEcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        101 NLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       101 ~~~~W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      +.|.|.||++++| .+|..++|+     +|+.|....+  ...|.+..|.....|+|+..
T Consensus        81 ~~~~W~dg~~~~~-~~W~~~~P~-----~C~~~~~~~~--~~~W~d~~C~~~~~fICe~~  132 (135)
T 1c3a_A           81 CRSEWSDASSVNY-ENLVKQFSK-----KCYALKKGTE--LRTWFNVYCGTENPEVCKYT  132 (135)
T ss_dssp             CCCBCTTSCBCCC-CCBCGGGCC-----CEEEEETTSC--SCSBEEECTTSCEEEEEEEC
T ss_pred             CceEECCCCcccc-cccCCCCCC-----cceEEeccCC--CCeEccCCCCCCccEEcccC
Confidence            9999999999987 677666876     8999976543  13455999999999999984

>1jwi_A Bitiscetin; domain swapping, C-type lectin, toxin; 2.00A {Bitis arietans} SCOP: d.169.1.1 PDB: 1uex_A

Probab=99.89  E-value=3.6e-23  Score=183.21  Aligned_cols=122  Identities=19%  Similarity=0.310  Sum_probs=103.2

Q ss_pred             CCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCC-C-ceEEEEe--ccCCCCCe
Q psy14896         28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQ-R-RKWYFGG--TQQSPNLW  103 (813)
Q Consensus        28 ~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~-~-~~w~g~~--~~~~~~~~  103 (813)
                      .||.||..|+++||+|+... ++|.+|+..|+.+||+||+|+|++|++||.+++...... . .+||||.  +...++.|
T Consensus         3 ~Cp~gw~~~~~~CY~~~~~~-~~w~~A~~~C~~~g~~La~i~s~~e~~~l~~~~~~~~~~~~~~~WIGl~~~~~~~~~~~   81 (131)
T 1jwi_A            3 GCLPDWSSYKGHCYKVFKKV-GTWEDAEKFCVENSGHLASIDSKEEADFVTKLASQTLTKFVYDAWIGLRDESKTQQCSP   81 (131)
T ss_dssp             -CCTTSEEETTEEEEEEEEE-ECHHHHHHHHHHTTCEECCCCSHHHHHHHHHHHHHHC--CCSCEEEEEEECCSSSSSCS
T ss_pred             CCCCCCEEeCCEeEEEECCC-cCHHHHHHHHHHcCCeECccCCHHHHHHHHHHHhhcccccCccEEEeeeecCCCCCCce
Confidence            59999999999999999984 999999999999999999999999999999988554222 4 7999999  88788999


Q ss_pred             EEcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        104 VNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       104 ~W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      .|.||++++| .+|.  +|+     +|+.|....+  ...|.+..|.....|+|+..
T Consensus        82 ~W~dg~~~~~-~~W~--~P~-----~C~~~~~~~~--~~~w~~~~C~~~~~fICe~~  128 (131)
T 1jwi_A           82 QWTDGSSVVY-ENVD--EPT-----KCFGLDVHTE--YRTWTDLPCGEKNPFICKSR  128 (131)
T ss_dssp             BCTTSCBCCS-CCBS--SCC-----CEEEECGGGT--TSSEEEECTTSCEEEEEEC-
T ss_pred             EEeCcCcccC-cCCC--CCC-----CceEEecCCC--CCeEcCcCCCCCcceeeCcC
Confidence            9999999987 5655  775     8999866542  14456999999999999985

>1hq8_A NKG2-D; homodimer, CIS-proline, apoptosis; 1.95A {Mus musculus} SCOP: d.169.1.1 PDB: 1jsk_A 1kcg_A*

Probab=99.89  E-value=1.6e-23  Score=182.48  Aligned_cols=120  Identities=23%  Similarity=0.412  Sum_probs=104.2

Q ss_pred             ccCCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeE
Q psy14896         25 LELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWV  104 (813)
Q Consensus        25 ~~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~  104 (813)
                      .+..||.||..|+++||+|+... ++|.+|+..|+.+||+||+|+|++|++||..+      ...+||||.+...++.|.
T Consensus         2 ~c~~Cp~gw~~~~~~CY~~~~~~-~~w~~A~~~C~~~g~~La~i~s~~e~~fl~~~------~~~~WIGl~~~~~~~~w~   74 (123)
T 1hq8_A            2 YCGPCPNNWICHRNNCYQFFNEE-KTWNQSQASCLSQNSSLLKIYSKEEQDFLKLV------KSYHWMGLVQIPANGSWQ   74 (123)
T ss_dssp             CCCCCSTTCEEETTEEEEEEEEE-ECHHHHHHHHHTTTCEECCCSCTTTTGGGGGC------CSCEEEEEEECTTTCCEE
T ss_pred             cCCCCCcccEEcCCEEEEEeCCc-cCHHHHHHHHHhcCCEecccCCHHHHHHHHhc------cCCEEEEeeecCCCCCeE
Confidence            35689999999999999999984 99999999999999999999999999999754      257899999988899999


Q ss_pred             EcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        105 NEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       105 W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      |.||+++.| .+|..++|+   .++|+.|...     ..|.+..|.....|+|++.
T Consensus        75 W~dg~~~~~-~~w~~~~p~---~~~C~~~~~~-----~~w~~~~C~~~~~fICe~~  121 (123)
T 1hq8_A           75 WEDGSSLSY-NQLTLVEIP---KGSCAVYGSS-----FKAYTEDCANLNTYICMKR  121 (123)
T ss_dssp             ETTSCBCCT-TTCEEECCT---TCCEEEECST-----TEEEEECTTSCEEEEEEEC
T ss_pred             eCCCCCccc-cccccCCCC---CCCcEEEecc-----CCEeccCCCCCceeEeeee
Confidence            999999997 566666886   4789998543     2455999999999999984

>2h2t_B Low affinity immunoglobulin epsilon FC receptor ( IGE receptor) (FC-epsilon-RII)...; C-type lectin, calcium-bound, lectin domain; 1.30A {Homo sapiens} PDB: 2h2r_A 1t8c_A 1t8d_A

Probab=99.89  E-value=4.2e-23  Score=191.72  Aligned_cols=125  Identities=17%  Similarity=0.374  Sum_probs=106.4

Q ss_pred             ccCCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeE
Q psy14896         25 LELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWV  104 (813)
Q Consensus        25 ~~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~  104 (813)
                      .+..||.||..|+++||+|+.. .++|.+|+.+|+.+||+||+|++++|++||.+++.    ...+||||.+...++.|.
T Consensus        13 ~~~~Cp~gw~~~~~~CY~~~~~-~~tw~~A~~~C~~~g~~La~i~s~~e~~fl~~~~~----~~~~WIGl~~~~~~~~w~   87 (175)
T 2h2t_B           13 VCNTCPEKWINFQRKCYYFGKG-TKQWVHARYACDDMEGQLVSIHSPEEQDFLTKRAS----HTGSWIGLRNLDLKGEFI   87 (175)
T ss_dssp             -CCBCCTTCEEETTEEEEEEEE-EECHHHHHHHHHHTTCEECCCCSHHHHHHHHTTCC----TTCEEEEEEEETTTTEEE
T ss_pred             cCCCCCcccEEeCCEEEEEeCC-ccCHHHHHHHHhhcCCEEeecCCHHHHHHHHHHhc----CCcEEecceecCCCCCeE
Confidence            4567999999999999999998 49999999999999999999999999999998863    357999999988889999


Q ss_pred             EcCCCCCCccccccCCCCCCc-ccCCeEEEEeeccccccceeeccCCCce-eeeeeec
Q psy14896        105 NEDGTNLNELDAAFLPEPADN-VQRDYLAYSFSQSLKRWGFERVTGMEPL-LFICEAS  160 (813)
Q Consensus       105 W~dgs~~~~~~~~~~~~p~~~-~~~~c~~~~~~~~~~~l~i~~~~~~d~~-~y~C~~~  160 (813)
                      |.||+++.| .+|..++|++. ..++|+.|..     ...|.+..|.... .|+|++.
T Consensus        88 W~dG~~~~y-~~W~~geP~~~~~~~~Cv~~~~-----~g~W~d~~C~~~~~~fICe~~  139 (175)
T 2h2t_B           88 WVDGSHVDY-SNWAPGEPTSRSQSEDCVMMRG-----SGRWNDAFCDRKLGAWVCDRL  139 (175)
T ss_dssp             ETTSCCCSS-CCBCTTCCCC-----CEEEECT-----TSCEEEECTTCCEEEEEEEEE
T ss_pred             eCCCCcccC-cCcCCCCCCCCCCCCCceEEcC-----CCcEEECCCCCcCcceEEeEC
Confidence            999999988 67777799874 4689999853     1245599999999 9999995

>1oz7_A Echicetin A-chain; platelet aggregation, dimer, toxin; 2.40A {Echis carinatus} SCOP: d.169.1.1

Probab=99.89  E-value=4.7e-23  Score=182.45  Aligned_cols=123  Identities=15%  Similarity=0.227  Sum_probs=106.9

Q ss_pred             CCchhhhccCCeEEEEecCCcCCHHHHHhHccc--CCCeEeeeCCHhHHHHHHHHhhhcCC-CCceEEEEeccC--CCCC
Q psy14896         28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS--LDSDLANVNDADEHGFIMYQLFWQDP-QRRKWYFGGTQQ--SPNL  102 (813)
Q Consensus        28 ~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~--~~~~L~~i~~~~e~~~i~~~~~~~~~-~~~~w~g~~~~~--~~~~  102 (813)
                      .||.||..|+++||+|+... ++|.+|+..|+.  .||+||+|++++|++||.+++..... ...+||||.+..  .++.
T Consensus         1 ~Cp~gw~~~~~~Cy~~~~~~-~~w~~A~~~C~~~~~g~~La~i~s~~e~~~l~~~~~~~~~~~~~~WIGl~~~~~~~~~~   79 (131)
T 1oz7_A            1 MCPPGWSSNGVYCYMLFKEP-KTWDEAEKFCNKQGKDGHLLSIESKKEEILVDIVVSENIGKMYKIWTGLSERSKEQHCS   79 (131)
T ss_dssp             CCCTTCEEETTEEEEEEEEE-ECHHHHHHHHHHHSTTCEECCCCSHHHHHHHHHHHHHHSCCCSEEEEEEEECCCGGGSC
T ss_pred             CcCCCcEEeCCEEEEEECCC-CCHHHHHHHHHhcCCCCEECccCCHHHHHHHHHHHHhhcCCCCCEEEeeeCCCCCCCCc
Confidence            49999999999999999984 999999999999  89999999999999999999865432 468999999988  7899


Q ss_pred             eEEcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        103 WVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       103 ~~W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      |.|.||++++| .+|.. +|+     +|+.|....+  ...|.+..|.....|+|++.
T Consensus        80 ~~W~dg~~~~~-~~W~~-~P~-----~Cv~~~~~~~--~~~w~~~~C~~~~~fICe~~  128 (131)
T 1oz7_A           80 SRWSDGSFFRS-YEIAI-RYS-----ECFVLEKQSV--FRTWVATPCENTFPFMCKYP  128 (131)
T ss_dssp             CBCSSSBCCSC-CCCCC-SCC-----CEEEEEGGGT--TCSEEEECTTSCEEEEEEEC
T ss_pred             eEECCCCeecc-ccccC-CCC-----CeEEEEccCC--CCeEeecCCCCCCcEEeeec
Confidence            99999999987 67777 775     8999976543  14556999999999999985

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.89  E-value=1.8e-22  Score=200.81  Aligned_cols=185  Identities=19%  Similarity=0.273  Sum_probs=133.8

Q ss_pred             CceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCC--CeEEEeeCccEEEEeecccCCeeEEEEEEeeecCccccC
Q psy14896        577 PEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEED--KRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNG  654 (813)
Q Consensus       577 ~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~--~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  654 (813)
                      ...+.+|+.++|.|.+ .+.|.+.|.|+|++.++.....  .......+++|.|.+++.+|+|.|+|.|.|..|...   
T Consensus        24 ~~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~---   99 (241)
T 3grw_A           24 LLAVPAANTVRFRCPA-AGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIR---   99 (241)
T ss_dssp             EEEEETTSEEEEECCE-ECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEE---
T ss_pred             ceEEcCCCeEEEEEEe-cCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCCceE---
Confidence            4567889999999999 6889999999999976533222  123334556799999999999999999999876543   


Q ss_pred             ceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEe----CCcccCCCcee-----------
Q psy14896        655 PFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTR----RGSPLPRNAYF-----------  719 (813)
Q Consensus       655 ~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k----~g~~l~~~~~~-----------  719 (813)
                      ..+.|.|...+........   .......+.+|+.++|.|.+.|.|.|.|+|+|    +|..+..+...           
T Consensus       100 ~~~~l~V~~~~~~~~~~~~---~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~  176 (241)
T 3grw_A          100 QTYTLDVLERSPHRPILQA---GLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISE  176 (241)
T ss_dssp             EEEEEEEECCCCCCCEEEE---CTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECS
T ss_pred             EEEEEEEeccCCCCceeec---CCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeee
Confidence            3366777653322111100   01223567899999999999999999999999    88887655321           


Q ss_pred             -eecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCCcccccC
Q psy14896        720 -ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPL  768 (813)
Q Consensus       720 -~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~~~~~~  768 (813)
                       .....+|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..+|.+...+
T Consensus       177 ~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~  226 (241)
T 3grw_A          177 SVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEEL  226 (241)
T ss_dssp             BSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC----------
T ss_pred             ecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCCCCCCccc
Confidence             1135679999999999999999999999999999999999998876443

>1htn_A Tetranectin; plasminogen binding, kringle 4, alpha-helical coiled coil, C-type lectin, carbohydrate recognition domain; 2.80A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1

Probab=99.89  E-value=3.7e-23  Score=193.43  Aligned_cols=128  Identities=15%  Similarity=0.182  Sum_probs=110.5

Q ss_pred             CCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcC-CCCceEEEEeccCCCCCeEE
Q psy14896         27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQD-PQRRKWYFGGTQQSPNLWVN  105 (813)
Q Consensus        27 ~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~-~~~~~w~g~~~~~~~~~~~W  105 (813)
                      ..||.||. |+++||+|+... ++|.+|+..|+.+||+||+|+|++|++||..++.... ....+||||++...++.|.|
T Consensus        49 ~~Cp~gw~-~~~~CY~~~~~~-~tw~~A~~~C~~~gg~La~i~s~~e~~~l~~~~~~~~~~~~~~WIGl~~~~~~g~w~W  126 (182)
T 1htn_A           49 TVCLKGTK-VHMKCFLAFTQT-KTFHEASEDCISRGGTLSTPQTGSENDALYEYLRQSVGNEAEIWLGLNDMAAEGTWVD  126 (182)
T ss_dssp             HHHHHSEE-ETTEEEEEEEEE-ECHHHHHHHHHTTTCEECCCCSHHHHHHHHHHHHHHTCSSCEEEEEEECSSSTTCCBC
T ss_pred             CCCCCCcE-ECCEEEEEECCC-cCHHHHHHHHhhCCCEEeeeCCHHHHHHHHHHHHhccCCCCcEEEeeECCCCCCeEEe
Confidence            46999999 899999999984 9999999999999999999999999999999885432 24689999999988999999


Q ss_pred             cCCCCCCcccccc---CCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        106 EDGTNLNELDAAF---LPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       106 ~dgs~~~~~~~~~---~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      .||++++| .+|.   .++|++.+.++|+.|....   ...|.+..|.....|+|+..
T Consensus       127 ~dG~~~~y-~nW~~~~~geP~~~~~~~Cv~l~~~~---~g~W~d~~C~~~~~fICe~~  180 (182)
T 1htn_A          127 MTGARIAY-KNWETEITAQPDGGKTENCAVLSGAA---NGKWFDKRCRDQLPYICQFG  180 (182)
T ss_dssp             TTSCBCCC-CCBCCSSSCSCCCTTTCCEEEEETTT---TTEEEEECTTSCEEEEEEEE
T ss_pred             CCCCCccC-CCCCCCCCCcCCCCCCCCCEEEccCC---CCCEECCCCCCCeeEEEEEe
Confidence            99999987 6777   6799876678999996532   24556999999999999984

>2xr6_A CD209 antigen; sugar binding protein, carbohydrate binding, mannose; HET: MAN 07B; 1.35A {Homo sapiens} PDB: 1sl4_A* 2it6_A* 1k9i_A* 2xr5_A* 1sl5_A* 2it5_A* 1xph_A 1k9j_A*

Probab=99.89  E-value=7.2e-23  Score=189.29  Aligned_cols=130  Identities=22%  Similarity=0.378  Sum_probs=108.7

Q ss_pred             ccccCCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCC
Q psy14896         23 DELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNL  102 (813)
Q Consensus        23 ~~~~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~  102 (813)
                      ...+..||.||..|+++||+|+... ++|.+|+..|+.+||+||+|+|++|++||..++..  ....+||||.+...++.
T Consensus        16 ~~~~~~Cp~gw~~~~~~CY~~~~~~-~tw~~A~~~C~~~g~~La~i~s~~e~~fl~~~~~~--~~~~~WIGl~~~~~~~~   92 (170)
T 2xr6_A           16 ERLSHPCPWEWTFFQGNCYFMSNSQ-RNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSR--SNRFTWMGLSDLNQEGT   92 (170)
T ss_dssp             -----CCCTTCEEETTEEEEECSSC-BCHHHHHHHHHHTTCEECCCCSHHHHHHHHHHHHH--HTCCEEEEEEEEEETTE
T ss_pred             ccccCCCCcCcEEeCCEEEEEECCc-CCHHHHHHHHHhCCCEEeeeCCHHHHHHHHHHhcc--CCCCEEeccccCCCCCe
Confidence            3456779999999999999999984 99999999999999999999999999999987643  24579999999877899


Q ss_pred             eEEcCCCCCCc--cccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeecc
Q psy14896        103 WVNEDGTNLNE--LDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEASI  161 (813)
Q Consensus       103 ~~W~dgs~~~~--~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~~  161 (813)
                      |.|.||+++.+  +.+|..++|++...++|+.|...    .  |.+..|.....|+|+...
T Consensus        93 w~W~dG~~~~~~~~~~W~~geP~~~~~~~Cv~~~~~----g--W~d~~C~~~~~fICe~~~  147 (170)
T 2xr6_A           93 WQWVDGSPLLPSFKQYWNRGEPNNVGEEDCAEFSGN----G--WNDDKCNLAKFWICKKSA  147 (170)
T ss_dssp             EEETTSCBCCGGGGGGBCTTCCCCTTCCCEEEEETT----E--EEEECTTSCBEEEEEEET
T ss_pred             EEeCCCCCcccccccCCCCCCCCCCCCCCCeEEeCC----c--EEccccCCCccEEEEECC
Confidence            99999999985  35676679987767899998652    2  559999999999999963

>1j34_A Coagulation factor IX-binding protein A chain; magnesium ION, calcium ION, GLA domain, protein binding/blood clotting complex; HET: CGU; 1.55A {Trimeresurus flavoviridis} SCOP: d.169.1.1 PDB: 1bj3_A* 1j35_A* 1x2t_A* 1x2w_A 1ixx_A 1y17_A 1wt9_A 1iod_A*

Probab=99.88  E-value=4.2e-23  Score=182.37  Aligned_cols=123  Identities=20%  Similarity=0.304  Sum_probs=105.5

Q ss_pred             CCchhhhccCCeEEEEecCCcCCHHHHHhHccc--CCCeEeeeCCHhHHHHHHHHhhhcCC-CC-ceEEEEe--ccCCCC
Q psy14896         28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS--LDSDLANVNDADEHGFIMYQLFWQDP-QR-RKWYFGG--TQQSPN  101 (813)
Q Consensus        28 ~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~--~~~~L~~i~~~~e~~~i~~~~~~~~~-~~-~~w~g~~--~~~~~~  101 (813)
                      .||.||..|+++||+++... ++|.+|+..|+.  .||+||+|+|++|++||.+++..... .. .+||||.  +...++
T Consensus         1 ~Cp~gw~~~~~~Cy~~~~~~-~~w~~A~~~C~~~~~g~~La~i~s~~e~~~l~~~~~~~~~~~~~~~WIGl~~~~~~~~~   79 (129)
T 1j34_A            1 DCPSGWSSYEGHCYKPFKLY-KTWDDAERFCTEQAKGGHLVSIESAGEADFVAQLVTENIQNTKSYVWIGLRVQGKEKQC   79 (129)
T ss_dssp             CCCTTCEEETTEEEEEEEEE-ECHHHHHHHHHHHSTTCEECCCCSHHHHHHHHHHHHHHCCCTTCCEEEEEEECSSCSCS
T ss_pred             CCCCCcEEeCCEEEEEECCC-CCHHHHHHHHhccCCCCEECccCCHHHHHHHHHHHhhcccCCCCCEEEeeecCCCCCCC
Confidence            49999999999999999984 999999999999  89999999999999999998865432 24 7999999  887889


Q ss_pred             CeEEcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeee
Q psy14896        102 LWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEA  159 (813)
Q Consensus       102 ~~~W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~  159 (813)
                      .|.|+||++++| .+|..++|+     +|+.|....+  ...|.+..|.....|+|++
T Consensus        80 ~~~W~dg~~~~~-~~W~~~~P~-----~C~~~~~~~~--~~~w~~~~C~~~~~fiCe~  129 (129)
T 1j34_A           80 SSEWSDGSSVSY-ENWIEAESK-----TCLGLEKETG--FRKWVNIYCGQQNPFVCEA  129 (129)
T ss_dssp             CCBCTTSCBCCC-CCBCGGGSC-----CEEEECGGGT--TCSBEEECTTSCEEEEEEC
T ss_pred             ceEECCcCccce-eccCCCCCC-----cceEEEccCC--CCeEccCCCCCCCceEeeC
Confidence            999999999987 577666876     8999866543  1445599999999999984

>3bdw_B NKG2-A/NKG2-B type II integral membrane protein; NK cells, receptor, glycoprotein, lectin, signal-A transmembrane, immune system receptor; 2.50A {Homo sapiens} PDB: 3cdg_K 3cii_H

Probab=99.88  E-value=6.8e-23  Score=177.79  Aligned_cols=117  Identities=20%  Similarity=0.458  Sum_probs=99.6

Q ss_pred             ccCCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeE
Q psy14896         25 LELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWV  104 (813)
Q Consensus        25 ~~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~  104 (813)
                      .+..||.||..|+++||+|+.. .++|.+|+..|+.+||+||+|+|++|++||.+++      ..+||||.+...++.|.
T Consensus         3 ~c~~Cp~gw~~~~~~CY~~~~~-~~~w~~A~~~C~~~g~~La~i~s~~e~~~l~~~~------~~~WIGl~~~~~~~~w~   75 (120)
T 3bdw_B            3 HCGHCPEEWITYSNSCYYIGKE-RRTWEESLLACTSKNSSLLSIDNEEEMKFLSIIS------PSSWIGVFRNSSHHPWV   75 (120)
T ss_dssp             CCTTSCTTCEESSSSEEEEEEE-EECHHHHHHHHHHTTSEECCCCCHHHHHHHHHHC------SEEEEEEECSSTTSCCE
T ss_pred             cCCCCCCCceEECCEEEEEECC-ccCHHHHHHHHHhCCCEEceeCCHHHHHHHHHcC------CCEeEEEEecCCCCceE
Confidence            4678999999999999999998 4999999999999999999999999999998863      47899999988899999


Q ss_pred             EcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeee
Q psy14896        105 NEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEA  159 (813)
Q Consensus       105 W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~  159 (813)
                      |+||+++.+ .+   .+|++ ..++|+.|...    .  |.+..|.....|+|++
T Consensus        76 W~dg~~~~~-~~---~~p~~-~~~~C~~~~~~----~--w~~~~C~~~~~fICe~  119 (120)
T 3bdw_B           76 TMNGLAFKH-EI---KDSDN-AELNCAVLQVN----R--LKSAQCGSSIIYHCKH  119 (120)
T ss_dssp             ETTSSBCCS-CC---C-----CCCCEEEEESS----S--EEEECTTSCEEEEEEC
T ss_pred             eCCCCccCc-cC---cCCCC-CCCCccEEeCC----c--eECCCCCCCcceeeee
Confidence            999999987 33   36654 46799998653    2  5599999999999986

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.88  E-value=1.2e-22  Score=197.28  Aligned_cols=179  Identities=17%  Similarity=0.172  Sum_probs=125.4

Q ss_pred             CCceeccC--CCceEEeCCCCCCCccEEEEccC---CCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEEEEeeecCc
Q psy14896        576 APEIGNQN--WGKAMFCDPPTNYPGVNYYWARD---YFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDT  650 (813)
Q Consensus       576 ~~~~~~~g--~~~~l~C~~~~~~p~~~v~W~k~---~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  650 (813)
                      ....+.+|  +.++|.|.+ .+ |.+.++|+|+   +..  +....++....++.|.|.+++.+|+|.|+|.|.|..+. 
T Consensus        15 ~~v~v~eG~~~~v~L~C~~-~~-p~~~v~w~~~~~~g~~--~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~n~~~~-   89 (213)
T 2x1w_L           15 GVVYITENKNKTVVIPCLG-SI-SNLNVSLCARYPEKRF--VPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDES-   89 (213)
T ss_dssp             EEEEECCSTTCEEEECCCB-SS-TTCCEEEEEETTTEEE--CCCSSSCEEETTTEEEEEGGGTTTCSEEEEEEC----C-
T ss_pred             eEEEEecCCCccEEEeecc-CC-CCcEEEEEhhcCCCcc--ccCCCcccccCCccEEEccCChhcCceEEEEEEECCee-
Confidence            34556789  999999998 45 7799999884   543  33344555566678999999999999999999995443 


Q ss_pred             cccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCC--CeEEEEeCCcccCCCce-e--------
Q psy14896        651 GRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPV--PSYNWTRRGSPLPRNAY-F--------  719 (813)
Q Consensus       651 ~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~--p~i~W~k~g~~l~~~~~-~--------  719 (813)
                       ..+..+.|.|...+. ..+.+    .+.....+.+|++++|.|.+.|.|.  +.|+|+++|..+..... .        
T Consensus        90 -~~s~~~~l~v~~~~~-p~~~~----~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~  163 (213)
T 2x1w_L           90 -YQSIMYIVVVVGYRI-YDVVL----SPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSG  163 (213)
T ss_dssp             -EECCCEEEEECBCCE-EEEEE----ESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSS
T ss_pred             -EEEEEEEEEEeCCcc-cceEE----cCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccC
Confidence             222335666644211 11111    0111236889999999999998664  58999999987643211 0        


Q ss_pred             ---eecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCCccc
Q psy14896        720 ---ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFT  765 (813)
Q Consensus       720 ---~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~~~  765 (813)
                         ....++|+|.+++.+|+|.|+|.|.|..|..+.++.|.|..+|.|.
T Consensus       164 ~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~i~  212 (213)
T 2x1w_L          164 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDPIEG  212 (213)
T ss_dssp             CSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC-----
T ss_pred             ccceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEecccccC
Confidence               1224579999999999999999999999999999999999998764

>1sb2_B Rhodocetin beta subunit; C-type lectin, domain swapping, toxin; 1.90A {Calloselasma rhodostoma} SCOP: d.169.1.1 PDB: 3gpr_B

Probab=99.88  E-value=9e-23  Score=179.74  Aligned_cols=121  Identities=18%  Similarity=0.298  Sum_probs=104.8

Q ss_pred             CCCchhhhccCCeEEEEecCCcCCHHHHHhHccc--CCCeEeeeCCHhHHHHHHHHhhhcC--CCCceEEEEeccCCCCC
Q psy14896         27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS--LDSDLANVNDADEHGFIMYQLFWQD--PQRRKWYFGGTQQSPNL  102 (813)
Q Consensus        27 ~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~--~~~~L~~i~~~~e~~~i~~~~~~~~--~~~~~w~g~~~~~~~~~  102 (813)
                      ..||.||..|+++||+|+.. .++|.+|+..|+.  +||+||+|+|++|++||.+++....  ....+||||.    ++.
T Consensus         2 ~~Cp~gw~~~~~~CY~~~~~-~~~w~~A~~~C~~~~~g~~La~i~s~~e~~~l~~~~~~~~~~~~~~~WiGl~----~~~   76 (129)
T 1sb2_B            2 FRCPTTWSASKLYCYKPFKE-KKTWIEAERFCAKQAENGHLVSIGSAAEADFLDLVIVVNFDKQRYRAWTGLT----ERN   76 (129)
T ss_dssp             CCCCTTCEECSSEEEEEEEE-EECHHHHHHHHHHHSTTCEECCCCSHHHHHHHHHHHHHHC---CCCEEEEEE----ECC
T ss_pred             CCCCCCCEEeCCEeEEEECC-CcCHHHHHHHHhhcCCCceECccCCHHHHHHHHHHHHhhcccCCCCEeEeec----CCc
Confidence            36999999999999999998 4999999999999  8999999999999999999886532  2457999998    778


Q ss_pred             eEEcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        103 WVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       103 ~~W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      |.|+||++++| .+|..++|+     +|+.|....+  ...|.+..|.....|+|+..
T Consensus        77 ~~W~dg~~~~~-~~W~~~~P~-----~C~~~~~~~~--~~~W~~~~C~~~~~fICe~~  126 (129)
T 1sb2_B           77 LKWTNGASVSY-ENLYEPYIR-----KCFVVQPWEG--KSKWYKADCEEKNAFLCKFP  126 (129)
T ss_dssp             CBCTTSCBCCS-CCBSSCCCC-----CEEEEEEETT--EEEEEEECTTSCEEEEEEEE
T ss_pred             cEECCCCcccc-cccCCCCCC-----CeEEEEecCC--CCeEeCcCCCCCcceEeccc
Confidence            99999999987 677766886     8999977654  24566999999999999985

>1umr_A Convulxin alpha, CVX alpha; lectin, C-type lectin, platelet, sugar-binding protein, activator, snake venom; 2.40A {Crotalus durissus terrificus} SCOP: d.169.1.1 PDB: 1uos_A

Probab=99.88  E-value=3.9e-23  Score=183.97  Aligned_cols=125  Identities=16%  Similarity=0.243  Sum_probs=107.6

Q ss_pred             CCCchhhhccCCeEEEEecCCcCCHHHHHhHccc--CCCeEeeeCCHhHHHHHHHHhhhcCC-CC-ceEEEEe--ccCCC
Q psy14896         27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS--LDSDLANVNDADEHGFIMYQLFWQDP-QR-RKWYFGG--TQQSP  100 (813)
Q Consensus        27 ~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~--~~~~L~~i~~~~e~~~i~~~~~~~~~-~~-~~w~g~~--~~~~~  100 (813)
                      ..||.||..|+++||+|+.. .++|.+|+..|+.  +||+||+|+|++|++||.+++..... .. .+||||.  +...+
T Consensus         2 ~~Cp~gw~~~~~~CY~~~~~-~~~w~~A~~~C~~~~~g~~La~i~s~~e~~~l~~~~~~~~~~~~~~~WIGl~~~~~~~~   80 (135)
T 1umr_A            2 LHCPSDWYYYDQHCYRIFNE-EMNWEDAEWFCTKQAKGAHLVSIKSAKEADFVAWMVTQNIEESFSHVSIGLRVQNKEKQ   80 (135)
T ss_dssp             CSSCTTCEEETTEEEEEEEE-EECHHHHHHHHHHHSTTCEECCCCSHHHHHHHHHHHHHHSCTTCCEEECSEEECCSSSS
T ss_pred             CCCCCCCEEcCCEeEEEECC-CCCHHHHHHHHHccCCCceECccCCHHHHHHHHHHHHhhcccCCCCEEEeccccCCCCC
Confidence            36999999999999999998 4999999999999  89999999999999999998865422 24 7999999  88788


Q ss_pred             CCeEEcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        101 NLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       101 ~~~~W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      +.|.|.||++++| .+|..++|+     +|+.|....+  ...|.+..|.....|+|+..
T Consensus        81 ~~w~W~dg~~~~~-~~W~~g~P~-----~C~~~~~~~~--~g~W~~~~C~~~~~~ICe~~  132 (135)
T 1umr_A           81 CSTKWSDGSSVSY-DNLLDLYIT-----KCSLLKKETG--FRKWFVASCIGKIPFVCKFP  132 (135)
T ss_dssp             SCCBCTTSCBCCC-CCBCGGGCC-----CEEEEEGGGT--TCSBEEECTTCCEEEEEEEC
T ss_pred             CccCcCCCCeecc-cccCCCCCC-----ccEEEecCCC--CCeEecCCCCCCCcEEeCcc
Confidence            9999999999987 677666886     8999976543  14455999999999999984

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.88  E-value=2.3e-22  Score=191.91  Aligned_cols=176  Identities=18%  Similarity=0.259  Sum_probs=134.1

Q ss_pred             ccccCCCceeccCCCceEEeCCCCCCC-ccEEEEcc-CCCCCcccCCCeEEEe----eCccEEEEeecccCCeeEEEEEE
Q psy14896        571 FNLKRAPEIGNQNWGKAMFCDPPTNYP-GVNYYWAR-DYFPNFVEEDKRVFVS----YDGALYFSALEQIDAGNYSCNVQ  644 (813)
Q Consensus       571 ~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~v~W~k-~~~~~~~~~~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~a~  644 (813)
                      +...+....+.+|+.++|.|.+ .+.| .+.+.|+| +|..+. ....++.+.    .+++|.|.+++.+|+|.|+|.|.
T Consensus         5 v~~~p~~~~v~~G~~v~l~C~~-~~~~~~~~v~W~~~~g~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (191)
T 1epf_A            5 VDIVPSQGEISVGESKFFLCQV-AGDAKDKDISWFSPNGEKLS-PNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVT   82 (191)
T ss_dssp             EEEESSSEEEETTCCEEEEEEE-CCCSCCCEEEEECTTSCEEC-CBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EEecCCCcEEcCCCCEEEEEEC-CCCCCCceEEEEeCCCcccc-CCCCeEEEEECCCCceEEEEccCCcccCEEEEEEEE
Confidence            4445566778899999999999 5655 89999999 776533 234455553    23569999999999999999999


Q ss_pred             eeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCc---eeee
Q psy14896        645 SKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA---YFEN  721 (813)
Q Consensus       645 n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~---~~~~  721 (813)
                      |..|.  .....+.|.|..+|.+...        +....+.+|++++|.|.+.|.|.|.|+|+|+|..+....   ....
T Consensus        83 ~~~~~--~~~~~~~l~v~~~p~~~~~--------~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~  152 (191)
T 1epf_A           83 AEDGT--QSEATVNVKIFQKLMFKNA--------PTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVL  152 (191)
T ss_dssp             ETTTE--EEEEEEEEEEECCSEEEEC--------CSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEEC
T ss_pred             cCCCc--ceEEEEEEEeecCceEecC--------CCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEe
Confidence            98752  2334577888777655431        223567899999999999999999999999999885322   2223


Q ss_pred             cceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896        722 FNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI  758 (813)
Q Consensus       722 ~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  758 (813)
                      .++.|.|.+++.+|+|.|+|.|.|..|.......+.|
T Consensus       153 ~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v  189 (191)
T 1epf_A          153 SNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV  189 (191)
T ss_dssp             TTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred             cCCeEEECCCChhhCEEEEEEEEEecceeEEEEEEEE
Confidence            4568999999999999999999999976665555554

>2yhf_A C-type lectin domain family 5 member A; immune system; 1.90A {Homo sapiens}

Probab=99.88  E-value=7.7e-23  Score=176.95  Aligned_cols=117  Identities=18%  Similarity=0.293  Sum_probs=100.7

Q ss_pred             CCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcC
Q psy14896         28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNED  107 (813)
Q Consensus        28 ~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~d  107 (813)
                      .||.||..|+++||+|+... ++|.+|+..|+.+||+||+|+|++|++||.+++    ....+||||.+...++.|.|+|
T Consensus         1 ~Cp~gw~~~~~~Cy~~~~~~-~~w~~A~~~C~~~g~~La~i~s~~e~~~l~~~~----~~~~~WIGl~~~~~~~~w~W~d   75 (118)
T 2yhf_A            1 MCPKDWEFYQARCFFLSTSE-SSWNESRDFCKGKGSTLAIVNTPEKLKFLQDIT----DAEKYFIGLIYHREEKRWRWIN   75 (118)
T ss_dssp             CCCTTCEEETTEEEEECSSC-BCHHHHHHHHHTTTCEECCCCSHHHHHHHHHHH----CSSCEEEEEEEETTTTEEEETT
T ss_pred             CCCCCcEEeCCEEEEEeCCC-CCHHHHHHHHhhcCCEEEEeCCHHHHHHHHHhh----CCCcEEEeccccCCCCcEEEeC
Confidence            49999999999999999985 999999999999999999999999999999887    2357999999988899999999


Q ss_pred             CCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        108 GTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       108 gs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      |+++.   +|..++|+   .++|+.|...     ..|.+..|.....|+|++.
T Consensus        76 g~~~~---~~~~~~~~---~~~C~~~~~~-----~~w~~~~C~~~~~fICe~~  117 (118)
T 2yhf_A           76 NSVFN---GNVTNQNQ---NFNCATIGLT-----KTFDAASCDISYRRICEKN  117 (118)
T ss_dssp             TEECC---SCEESCCT---TCCEEEESSS-----SSEEEECTTSCBEEEEEEE
T ss_pred             CCcCC---CCccCCCC---CCCeeEEcCC-----CcCccccCCCCceeeeccc
Confidence            99975   35444554   4799998542     2355999999999999974

>3gpr_D Rhodocetin subunit delta; disulfide bond, lectin, secreted, toxin, cell adhesion; 3.20A {Calloselasma rhodostoma}

Probab=99.88  E-value=1.1e-23  Score=184.30  Aligned_cols=121  Identities=21%  Similarity=0.313  Sum_probs=104.5

Q ss_pred             CchhhhccCCeEEEEecCCcCCHHHHHhHcccC--CCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEc
Q psy14896         29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSL--DSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNE  106 (813)
Q Consensus        29 Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~--~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~  106 (813)
                      ||.||..|+++||+|+.+ .++|.+|+..|+.+  ||+||+|++++|++||..++........+||||.+...++.|.|+
T Consensus         1 Cp~gw~~~~~~CY~~~~~-~~tw~~A~~~C~~~~~g~~La~i~s~~e~~~l~~~~~~~~~~~~~WIGl~~~~~~~~~~W~   79 (124)
T 3gpr_D            1 CPLHWSSYNGYCYRVFSE-LKTWEDAESFCYAQHKGSRLASIHSREEEAFVGKLASQTLKYTSMWLGLNNAWAACKWEWS   79 (124)
T ss_dssp             CCSSCCCSSSEEEEEEEE-EEESHHHHHHHHHHSTTCBSCCCCSHHHHHHHHHHHHHSCSSCCBCCSEECCSSCSSCSSS
T ss_pred             CCCcceecCCEeEEEeCC-CcCHHHHHHHHHhcCCCCEEcccCCHHHHHHHHHHHHhcCCCCCEEEEeEcCCCCCceEEC
Confidence            999999999999999998 49999999999999  999999999999999999986653446899999998888999999


Q ss_pred             CCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        107 DGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       107 dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      ||++++| .+|.. +|      +|+.|....+.  ..|.+..|.....|+|+++
T Consensus        80 dg~~~~~-~~W~~-~p------~C~~~~~~~~~--~~W~~~~C~~~~~fiCe~p  123 (124)
T 3gpr_D           80 DDAKLDY-KVWLR-RA------YCAVMVVKTDR--IFWYNRGCEKTVSFLCKFY  123 (124)
T ss_dssp             SCCCSCC-BCCCS-CC------CEECCBCCSSS--CBBCEECTTSEEEEEEEEE
T ss_pred             CCCcccc-cccCC-CC------CcEEEEcCCCC--CcEeCCCCCCCccEEeeec
Confidence            9999987 56544 33      89998765432  3455999999999999984

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.88  E-value=3.4e-22  Score=193.73  Aligned_cols=180  Identities=21%  Similarity=0.297  Sum_probs=135.2

Q ss_pred             CCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcc-----------------cCCCeEEEeeCccEEEEeecccCCe
Q psy14896        575 RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFV-----------------EEDKRVFVSYDGALYFSALEQIDAG  637 (813)
Q Consensus       575 ~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~-----------------~~~~~~~~~~~~~L~i~~~~~~d~G  637 (813)
                      ..+..+.+|+.++|.|.+ .+.|.+.|.|+|++.....                 ....++.+..+++|.|.+++.+|+|
T Consensus         6 ~~~~~v~~G~~v~L~C~~-~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G   84 (208)
T 3r4d_A            6 AVPPQVAEDNNVLLLVHN-LPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMG   84 (208)
T ss_dssp             EESSEEETTCCEEEEEEC-CCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGGGCE
T ss_pred             CccceeecCCcEEEEEeC-CCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccccCCe
Confidence            345667889999999997 6888899999997542110                 1234666677789999999999999


Q ss_pred             eEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCc
Q psy14896        638 NYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA  717 (813)
Q Consensus       638 ~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~  717 (813)
                      .|+|.+.|..+.  .....+.|.|..++....+..+.       ..+.+|+.++|.|.+.+.| |.|+|+|+|..+..+.
T Consensus        85 ~Y~C~~~~~~~~--~~~~~~~l~V~~~~~~p~i~~~~-------~~~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~~  154 (208)
T 3r4d_A           85 VYTLDMTDENYR--RTQATVRFHVHQPVTQPFLQVTN-------TTVKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTE  154 (208)
T ss_dssp             EEEEEEECSSCE--EEEEEEEEEEECCCCCCEEEESC-------SSCCTTCCEEEEEECSCTT-CEEEEEETTEECCCCS
T ss_pred             EEEEEEEcccCc--eeEEEEEEEeccCCCCCEEecCC-------ceEeeCCCEEEEEECCCCC-CceEEEECCEeCCCCC
Confidence            999999998542  22344678887765444433221       1288999999999999976 7999999999987665


Q ss_pred             eee--ecceEEEECCCCCCCCEEEEEEEEcCCCce-EEEEEEEEEcCCccc
Q psy14896        718 YFE--NFNRILTIPNVKVEDQGEYICRASNDRSAL-ESSVTISIQAEPNFT  765 (813)
Q Consensus       718 ~~~--~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~~~P~~~  765 (813)
                      ++.  ..+.+|.|.++..+|+|.|+|.|.|.+|.. +..++|.|..||.+.
T Consensus       155 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~~~~  205 (208)
T 3r4d_A          155 RMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPHHH  205 (208)
T ss_dssp             SEEEETTTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC------
T ss_pred             CeEEcCCCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEeCCccc
Confidence            443  335789999999999999999999999985 458999999888764

>3gpr_C Rhodocetin subunit gamma; disulfide bond, lectin, secreted, toxin, cell adhesion; 3.20A {Calloselasma rhodostoma}

Probab=99.88  E-value=2e-23  Score=185.60  Aligned_cols=124  Identities=15%  Similarity=0.182  Sum_probs=106.6

Q ss_pred             CCchhhhccCCeEEEEecCCcCCHHHHHhHcccC--CCeEeeeCCHhHHHHHHHHhhhcCCC--CceEEEEeccCCCCC-
Q psy14896         28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSL--DSDLANVNDADEHGFIMYQLFWQDPQ--RRKWYFGGTQQSPNL-  102 (813)
Q Consensus        28 ~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~--~~~L~~i~~~~e~~~i~~~~~~~~~~--~~~w~g~~~~~~~~~-  102 (813)
                      .||.||..|+++||+|+... ++|.+|+..|+.+  ||+||+|+|++|++||.+++......  ..+||||.+...++. 
T Consensus         2 ~Cp~gw~~~~~~CY~~~~~~-~tw~~A~~~C~~~~~G~~La~i~s~~e~~~l~~~~~~~~~~~~~~~WIGl~~~~~~~~~   80 (134)
T 3gpr_C            2 NCLPGWSAYDQHCYQAFNEP-KTWDEAERFCTEQAKRGHLVSIGSDGEADFVAQLVTNNIKRPELYVWIGLRDRRKEQQC   80 (134)
T ss_dssp             CCCTTCEESSSCEEEECSCC-BCSHHHHHHHTTSSSCCEECCCCCHHHHHHHHHHHHHHHCSSCCBCCCSCBCCSSTTSC
T ss_pred             cCCCcceeeCCEEEEEeCCC-cCHHHHHHHHHhhCCCceEeeeCCHHHHHHHHHHHHhhccCCCCcEEEeeEecCCCCCc
Confidence            59999999999999999985 9999999999999  89999999999999999998654332  678999999988999 


Q ss_pred             e-EEcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        103 W-VNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       103 ~-~W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      | .|+||++++| .+|..++|     ++|+.|....+  ...|.+..|.....|+|+++
T Consensus        81 w~~W~dG~~~~~-~~W~~~~~-----~~Cv~~~~~~~--~~~W~~~~C~~~~~fICe~~  131 (134)
T 3gpr_C           81 SSEWSMSASIIY-VNWNTGES-----QMCQGLARWTG--FRKWDYSDCQAKNPFVCKFS  131 (134)
T ss_dssp             SCEETTCCCSCC-BCBSSCEE-----CCEECCBCSSS--SCBBCEECTTCCBCCEEEEC
T ss_pred             CCEeCCcCcccc-cccCCCCC-----CcceEEeccCC--CCcCcCCCCCCCCcEEeCcC
Confidence            9 9999999997 57665554     78999876544  23455999999999999985

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.88  E-value=1.8e-22  Score=196.05  Aligned_cols=183  Identities=12%  Similarity=0.110  Sum_probs=127.6

Q ss_pred             ccccccCCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEE-EeeCc--cEEEEeecccCCeeEEEEEEe
Q psy14896        569 GEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVF-VSYDG--ALYFSALEQIDAGNYSCNVQS  645 (813)
Q Consensus       569 p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~-~~~~~--~L~i~~~~~~d~G~Y~C~a~n  645 (813)
                      |.+...+. ..+.+|++++|.|.+ .+ +.+.|.|+|+|.++.... .... ...++  +|.|.+++.+|+|.|+|.|.|
T Consensus        10 P~i~~~p~-~~v~~G~~vtL~C~~-~~-~~~~~~W~k~g~~~~~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   85 (218)
T 1uct_A           10 PFISAKSS-PVIPLDGSVKIQCQA-IR-EAYLTQLMIIKNSTYREI-GRRLKFWNETDPEFVIDHMDANKAGRYQCQYRI   85 (218)
T ss_dssp             CCEEESSC-SEEETTCCEEEEECC-CT-TCSEEEEEEEETTEEEEC-SEECC----CCCEEEECSCCGGGCEEEEEEEEE
T ss_pred             CEEEecCC-CccCCCCCEEEEEEc-CC-CCCEEEEEECCCcccccc-cccCCCCcceeeEEEEcccccccCEEEEEEEEc
Confidence            33433333 467889999999998 45 678999999987643211 1111 12345  899999999999999999999


Q ss_pred             eecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceE
Q psy14896        646 KVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI  725 (813)
Q Consensus       646 ~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~  725 (813)
                      ..|... .+..+.|.|...+....+...     . ...+.+|++++|.|.+.+.|.+.+.|+|+|..+............
T Consensus        86 ~~~~~~-~s~~~~l~V~~~~~~P~i~~~-----p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~~~~~~~~~~  158 (218)
T 1uct_A           86 GHYRFR-YSDTLELVVTGLYGKPFLSAD-----R-GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPAN  158 (218)
T ss_dssp             TTTEEE-ECCCEEEEEECSSCCCEEEES-----S-CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSEEECSSSEE
T ss_pred             CCCcee-ecCCEEEEEcCcccCCEEEeC-----C-CCccCCCCCEEEEEeCCCCCCCEEEEEECCCcccccccCCCccCE
Confidence            765322 233467777653221122111     1 246789999999998788888999999999988654333345678


Q ss_pred             EEECCCCCCCCEEEEEEEEcCCC-----ceEEEEEEEEEcCC
Q psy14896        726 LTIPNVKVEDQGEYICRASNDRS-----ALESSVTISIQAEP  762 (813)
Q Consensus       726 L~i~~v~~~d~G~Y~C~a~N~~G-----~~~~~~~l~V~~~P  762 (813)
                      |.|.+++.+|+|.|+|.|.|..+     ..+..+.|.|.+++
T Consensus       159 L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~~  200 (218)
T 1uct_A          159 FSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTDSI  200 (218)
T ss_dssp             EECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC---
T ss_pred             EEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEecCC
Confidence            99999999999999999998642     34567888888654

>3m9z_A Killer cell lectin-like receptor subfamily B MEMB; C-type lectin-like domain, domain swapping, disulfide bond, transmembrane protein; 1.70A {Mus musculus} SCOP: d.169.1.0 PDB: 3t3a_A

Probab=99.88  E-value=6.2e-23  Score=183.58  Aligned_cols=124  Identities=19%  Similarity=0.362  Sum_probs=106.0

Q ss_pred             cCCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEE
Q psy14896         26 ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVN  105 (813)
Q Consensus        26 ~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W  105 (813)
                      ...||.||..|+++||+|+... ++|.+|+..|+.+||+||+|+|++|++||.+++..  ....+||||.+...++.|.|
T Consensus         3 ~~~Cp~gw~~~~~~CY~~~~~~-~~w~~A~~~C~~~g~~La~i~s~~e~~~l~~~~~~--~~~~~WIGl~~~~~~~~w~W   79 (139)
T 3m9z_A            3 KLECPQDWLSHRDKCFHVSQVS-NTWEEGLVDCDGKGATLMLIQDQEELRFLLDSIKE--KYNSFWIGLRYTLPDMNWKW   79 (139)
T ss_dssp             -CCCCTTCEEETTEEEEECSSC-BCHHHHHHHHHHTTCEECCCCCHHHHHHHHHHHTC--SSSCEEEEEEEECCCCCCBC
T ss_pred             CCCCCccceecCCEEEEEECCc-CCHHHHHHHHHhcCCeEeeeCCHHHHHHHHHHhcc--cCccEEEEEeccCCCCCeEe
Confidence            3569999999999999999994 99999999999999999999999999999999853  23579999999988899999


Q ss_pred             cCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeecc
Q psy14896        106 EDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEASI  161 (813)
Q Consensus       106 ~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~~  161 (813)
                      +||+++.+ .+|+..++.+  .++|+.|..  +  .  |.+..|.....|+|++..
T Consensus        80 ~dg~~~~~-~~~~~~~~~~--~~~Cv~~~~--~--~--w~~~~C~~~~~fICe~~~  126 (139)
T 3m9z_A           80 INGSTLNS-DVLKITGDTE--NDSCAAISG--D--K--VTFESCNSDNRWICQKEL  126 (139)
T ss_dssp             TTSCBCCH-HHHTTSSCTT--CEEEEEEET--T--E--EEEEETTSCBEEEEEEEC
T ss_pred             CCCCcCCc-CccccCCCCC--CCCeeEEeC--C--c--EEeCCCCCCCceEeeecC
Confidence            99999998 5777664333  578999853  2  3  459999999999999963

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.88  E-value=1.4e-21  Score=190.10  Aligned_cols=194  Identities=19%  Similarity=0.292  Sum_probs=146.5

Q ss_pred             CceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccc--cccccCCCccEEeeCCeEEEcCCcccc
Q psy14896        190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVA--NLIDPLSDKRFTLSGGNLIINDPRQVE  267 (813)
Q Consensus       190 P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~~  267 (813)
                      +.|...|.++.+.+|     +++.|.|.+.+.|.+.|.|+|++..+.....  ..+......++...+++|.|.+. +.+
T Consensus         2 ~~v~~~~~~~~v~~G-----~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~v-~~~   75 (212)
T 1f97_A            2 GSVYTAQSDVQVPEN-----ESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSV-TRK   75 (212)
T ss_dssp             CEEECSCSEEEEETT-----CCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCC-CGG
T ss_pred             ceEEecCCCeEEEcC-----CCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeeceeEEEccc-Ccc
Confidence            456667788888777     6699999999999999999999976421110  01122345567777889999886 899


Q ss_pred             CCeeEEEEeecCcee-eEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccc-cccccCC---
Q psy14896        268 DRGSYHCKASNKFGS-IISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYF-PNFVEED---  342 (813)
Q Consensus       268 d~G~Y~C~a~n~~g~-~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~-~~~~~~~---  342 (813)
                      |+|.|+|.|.|..|. ..+..+.|.|..+|.+.....+..+.+|+.++|.|.+..+.|.+.+.|+|++. ++.....   
T Consensus        76 D~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~  155 (212)
T 1f97_A           76 DNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTR  155 (212)
T ss_dssp             GCEEEEEEEEETTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CB
T ss_pred             cCeEEEEEEEccCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccc
Confidence            999999999998762 22667888888888776666677889999999999966889999999999998 7543322   


Q ss_pred             ----ccEEE-ccCccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEcc
Q psy14896        343 ----KRVFV-SYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFP  390 (813)
Q Consensus       343 ----~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~  390 (813)
                          .++.. ...+.|.|.++..+|+|.|+|.|.|..|.. ..+..+.|.|..
T Consensus       156 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~s~~~~l~V~~  207 (212)
T 1f97_A          156 AFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTA-MRSEAAHMDAVE  207 (212)
T ss_dssp             SCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCC-EECCCEEEEEES
T ss_pred             cccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCc-cccceEEEEEEE
Confidence                23333 345689999999999999999999998854 224456777653

>3alu_A Lectin CEL-IV, C-type; C-type lectin, raffinose, sugar binding protein; HET: RAF; 1.65A {Cucumaria echinata} PDB: 3als_A* 3alt_A*

Probab=99.88  E-value=5.2e-23  Score=188.06  Aligned_cols=129  Identities=18%  Similarity=0.313  Sum_probs=111.0

Q ss_pred             CCCchhhhccCCeEEEEecCCcCCHHHHHhHccc--C---------CCeEeeeCCHhHHHHHHHHhhhcCC-----C--C
Q psy14896         27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS--L---------DSDLANVNDADEHGFIMYQLFWQDP-----Q--R   88 (813)
Q Consensus        27 ~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~--~---------~~~L~~i~~~~e~~~i~~~~~~~~~-----~--~   88 (813)
                      ..||.||..|+++||+++.. .++|.+|+..|+.  +         ||+||+|++++|++||.+++.....     .  .
T Consensus         3 ~~Cp~gw~~~~~~CY~~~~~-~~tw~~A~~~C~~~~~~~~~~~~~~g~~La~i~s~~e~~~l~~~~~~~~~~~~~~~~~~   81 (157)
T 3alu_A            3 TSCPPLWTGFNGKCFRLFHN-HLNFDNAENACRQFGLASCSGDELATGHLASIHSAESQAFLTELVKTSLPDLITGGWAP   81 (157)
T ss_dssp             CEECTTCEEETTEEEEEEEE-EECHHHHHHHHTTEEEEETTSCEEEECEECCCCSHHHHHHHHHHHHHHCGGGCCSSSCS
T ss_pred             CCCCCCcEeeCCEEEEEECC-ccCHHHHHHHhhccccccccCCCCCCeEEcccCCHHHHHHHHHHHHhcccccccccCCC
Confidence            35999999999999999998 4999999999999  8         9999999999999999999865422     2  6


Q ss_pred             ceEEEEeccCCCCCeEEcCCCCCCccccccCCCCCCcc-cCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896         89 RKWYFGGTQQSPNLWVNEDGTNLNELDAAFLPEPADNV-QRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus        89 ~~w~g~~~~~~~~~~~W~dgs~~~~~~~~~~~~p~~~~-~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      .+||||.+...++.|.|.||++++| .+|..++|++.. .++|+.|....+   ..|.+..|.....|+|+..
T Consensus        82 ~~WIGl~~~~~~~~w~W~dG~~~~y-~~W~~g~P~~~~~~~~Cv~~~~~~~---~~W~d~~C~~~~~fICe~~  150 (157)
T 3alu_A           82 QVYIGMKVGSTNSDQTWTDGSSVDY-DGWVSGEPNNGPNSRGAIAAGDYSR---GFWADVYSNNNFKYICQLP  150 (157)
T ss_dssp             EEEEEEEECSSTTCEEETTCCCCCC-CCBCTTCCCSCSSEEEEEECSTTTT---TCEEEECTTCCEEEEEECC
T ss_pred             CEEEeeeeCCCCCCeEeCCCCCCCc-cCcCCCCCCCCCCCCCeEEEecCCC---CeEcCCCCCCccceEeccc
Confidence            7999999988889999999999987 677777998753 679999865432   4455999999999999985

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.88  E-value=8.1e-23  Score=195.76  Aligned_cols=170  Identities=14%  Similarity=0.114  Sum_probs=110.8

Q ss_pred             cccccccCCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEEEEeee
Q psy14896        568 IGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV  647 (813)
Q Consensus       568 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~  647 (813)
                      +|.+...+. ..+.+|+.++|.|.+ .+.|. .+.|+|++.++............+++|.|.+++.+|+|.|+|.|.|..
T Consensus         5 ~P~i~~~p~-~~v~~G~~v~L~C~~-~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   81 (196)
T 2d3v_A            5 KATLWAEPG-SVISRGNSVTIRCQG-TLEAQ-EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPA   81 (196)
T ss_dssp             BCEEEEESC-SEEETTCCEEEEEEC-CTTCC-EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCEEEeCCC-CcccCCCeEEEEEeC-CCCCc-EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeCCC
Confidence            344444333 367889999999999 56665 999999997643211111111234579999999999999999999987


Q ss_pred             cCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCcee---e---e
Q psy14896        648 SDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF---E---N  721 (813)
Q Consensus       648 g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~---~---~  721 (813)
                      |.... +..+.|.|...+....+..+      ....+.+|++++|.|.+.+.| |.|+|+|+|..+......   .   .
T Consensus        82 g~~~~-s~~~~l~V~~~~~~p~i~~~------~~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~~~~~~~~  153 (196)
T 2d3v_A           82 GWSEP-SDPLELVVTGFYNKPTLSAL------PSPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQLTPSGQ  153 (196)
T ss_dssp             EECBC-CCCEEEEEECSSCCCEEEC-----------------CEEEEEESSCC-SEEEEEEC---CCEEEEECEECTTSC
T ss_pred             CcCCc-CccEEEEecCCCCCCeEEcc------CCccccCCCcEEEEEEcCCCC-CEEEEEccCCcccccccccccccCCC
Confidence            64322 23467777764322222111      114678999999999999999 899999999987543211   1   1


Q ss_pred             cceEEEECCCCCCCCEEEEEEEEcCCC
Q psy14896        722 FNRILTIPNVKVEDQGEYICRASNDRS  748 (813)
Q Consensus       722 ~~~~L~i~~v~~~d~G~Y~C~a~N~~G  748 (813)
                      ....|.|.+++.+|+|.|+|.|.|..+
T Consensus       154 ~~~~L~I~~v~~~D~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          154 FQALFPVGPVTPSHRWMLRCYGSRRHI  180 (196)
T ss_dssp             EEEEEECCCCBTTBCEEEEEEEEETTE
T ss_pred             ceeEEEeeecCcccCeeEEEEEEccCC
Confidence            237899999999999999999999865

>3ff7_C Killer cell lectin-like receptor subfamily G member 1; KLRG1-cadherin complex, calcium, cell adhesion, cell junction, cell membrane; 1.80A {Homo sapiens} SCOP: d.169.1.0

Probab=99.88  E-value=1.5e-22  Score=173.12  Aligned_cols=112  Identities=24%  Similarity=0.405  Sum_probs=96.6

Q ss_pred             CchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcCC
Q psy14896         29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDG  108 (813)
Q Consensus        29 Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~dg  108 (813)
                      ||.||..|+++||+|+.+. ++|.+|+..|+.+||+||+|+|++|++||.+++.    ...+||||.+   ++.|.|+||
T Consensus         1 Cp~gw~~~~~~CY~~~~~~-~~w~~A~~~C~~~g~~La~i~s~~e~~~l~~~~~----~~~~WiGl~~---~~~~~W~dg   72 (112)
T 3ff7_C            1 CPDRWMKYGNHCYYFSVEE-KDWNSSLEFCLARDSHLLVITDNQEMSLLQVFLS----EAFSWIGLRN---NSGWRWEDG   72 (112)
T ss_dssp             CCTTCEEETTEEEEECSSC-BCHHHHHHHHHTTTCEECCCCSHHHHHHHHTTCC----SSCEEEEEEE---SSSEEETTS
T ss_pred             CCccceEeCCEEEEEeCCc-cCHHHHHHHHhhcCCeEeeECCHHHHHHHHHhcc----CCCEEEeeec---CCceEeCCC
Confidence            9999999999999999994 9999999999999999999999999999988863    3579999997   568999999


Q ss_pred             CCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeee
Q psy14896        109 TNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEA  159 (813)
Q Consensus       109 s~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~  159 (813)
                      +++.| .+|....    ..++|+.|...    .  |.+..|.....|+|++
T Consensus        73 ~~~~~-~~w~~~~----~~~~C~~~~~~----~--w~~~~C~~~~~fICek  112 (112)
T 3ff7_C           73 SPLNF-SRISSNS----FVQTCGAINKN----G--LQASSCEVPLHWVCKK  112 (112)
T ss_dssp             CBCCS-SCEECSS----TTCCEEEEETT----E--EEEECTTSCBEEEEEC
T ss_pred             Ccccc-ceecCCC----CCCCCeEEeCC----C--cccCCCCCCCceeecC
Confidence            99997 5664322    36799998652    2  5599999999999984

>1mpu_A NKG2-D type II integral membrane protein; C-type lectin-like domain, immune system; 2.50A {Homo sapiens} SCOP: d.169.1.1 PDB: 1hyr_B

Probab=99.88  E-value=3e-23  Score=184.84  Aligned_cols=120  Identities=21%  Similarity=0.396  Sum_probs=104.1

Q ss_pred             ccCCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeE
Q psy14896         25 LELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWV  104 (813)
Q Consensus        25 ~~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~  104 (813)
                      .+..||.||..|+++||+|+... ++|.+|+..|+.+||+||+|+|++|++||..+      ...+||||.+...++.|.
T Consensus        17 ~~~~Cp~gw~~~~~~CY~~~~~~-~~w~~A~~~C~~~g~~La~i~s~~e~~fl~~~------~~~~WIGl~~~~~~~~w~   89 (138)
T 1mpu_A           17 YCGPCPKNWICYKNNCYQFFDES-KNWYESQASCMSQNASLLKVYSKEDQDLLKLV------KSYHWMGLVHIPTNGSWQ   89 (138)
T ss_dssp             CCCCCCTTCEECSSCEEEEEEEE-ECHHHHHHHHHHTSCEECCCCCTTTCGGGGGC------CSEEEEEEEECTTTCCEE
T ss_pred             ccCCCChhheEeCCEEEEEECCC-CCHHHHHHHHHhcCCEEeeeCCHHHHHHHHhc------cCCEeEeeeccCCCCceE
Confidence            45679999999999999999984 99999999999999999999999999999753      257999999988899999


Q ss_pred             EcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        105 NEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       105 W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      |.||+++.| .+|..++|+   .++|+.|... +    .|.+..|.....|+|++.
T Consensus        90 W~dG~~~~~-~~w~~~~p~---~~~C~~~~~~-~----~w~~~~C~~~~~fICe~~  136 (138)
T 1mpu_A           90 WEDGSILSP-NLLTIIEMQ---KGDCALYASS-F----KGYIENCSTPNTYICMQR  136 (138)
T ss_dssp             ETTSCBCCT-TSCEEECSS---CCSEEEEETT-T----EEEEECTTSCEEEEEEEC
T ss_pred             eCCCCcCCc-cccccCCCC---CCCCeEEECC-C----cEEccCCCCCCeEcccCc
Confidence            999999997 566666885   4799998643 1    345999999999999984

>2e3x_B Coagulation factor X-activating enzyme light CHAI; disintegrin, metalloproteinase, C-type lectin, hydrolase, BL clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia russellii siamensis}

Probab=99.88  E-value=4.8e-23  Score=183.20  Aligned_cols=124  Identities=20%  Similarity=0.228  Sum_probs=106.1

Q ss_pred             CCchhhhccCCeEEEEecCCcCCHHHHHhHccc--CCCeEeeeCCHhHHHHHHHHhhhcCC-CC-ceEEEEe--ccCCCC
Q psy14896         28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS--LDSDLANVNDADEHGFIMYQLFWQDP-QR-RKWYFGG--TQQSPN  101 (813)
Q Consensus        28 ~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~--~~~~L~~i~~~~e~~~i~~~~~~~~~-~~-~~w~g~~--~~~~~~  101 (813)
                      .||.||..|+++||+++... ++|.+|+..|+.  .||+||+|++++|++||.+++..... .. .+||||.  +...++
T Consensus         2 ~Cp~gw~~~~~~CY~~~~~~-~~w~~A~~~C~~~~~g~~La~i~s~~e~~~l~~~~~~~~~~~~~~~WIGl~~~~~~~~~   80 (134)
T 2e3x_B            2 DCPPDSSLYRYFCYRVFKEH-KTWEAAERFCMEHPNNGHLVSIESMEEAEFVAKLLSNTTGKFITHFWIGLMIKDKEQEC   80 (134)
T ss_dssp             CCTTTSEEETTEEEEEEEEE-EEHHHHHHHHTSTTTTCCBCCCCSHHHHHHHHHHHHTCC----CEEECCEEECSSCTTT
T ss_pred             CCCCCCEEeCCEeeEEeCCC-cCHHHHHHHHhccCCCcEEcccCCHHHHHHHHHHHHhhccCCCCCEEEeeeecCCCCCC
Confidence            59999999999999999984 999999999999  89999999999999999998865422 14 7999999  887889


Q ss_pred             CeEEcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        102 LWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       102 ~~~W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      .|.|.||++++| .+|..++|+     +|+.|....+  ...|.+..|.....|+|++.
T Consensus        81 ~~~W~dg~~~~~-~~W~~~~P~-----~C~~~~~~~~--~~~w~~~~C~~~~~~ICe~~  131 (134)
T 2e3x_B           81 SSEWSDGSSVSY-DKLGKQEFR-----KCFVLEKESG--YRMWFNRNCEERYLFVCKVP  131 (134)
T ss_dssp             TCCCTTSCCCCC-CCBCGGGCC-----CEEEEEGGGT--TCCBEEECTTSEEEEEEEEC
T ss_pred             ccEeCCCCcccc-cccCCCCCC-----CeEEEEecCC--CCcCCCCCCCCCcceEeCcc
Confidence            999999999987 677666876     8999976543  14455999999999999984

>1hup_A Mannose-binding protein; alpha-helical coiled-coil, C-type lectin; 2.50A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1

Probab=99.88  E-value=8.4e-23  Score=182.54  Aligned_cols=121  Identities=16%  Similarity=0.118  Sum_probs=106.6

Q ss_pred             CCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcC
Q psy14896         28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNED  107 (813)
Q Consensus        28 ~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~d  107 (813)
                      .|+.||..|+++||+++... ++|.+|+..|+.+||+||+|+|++|++||.+++.     ..+||||.+...++.|.|.|
T Consensus        19 ~~~~~w~~~~~~Cy~~~~~~-~~w~~A~~~C~~~g~~La~i~s~~e~~~l~~~~~-----~~~WIGl~~~~~~~~w~W~d   92 (141)
T 1hup_A           19 LTFSLGKQVGNKFFLTNGEI-MTFEKVKALCVKFQASVATPRNAAENGAIQNLIK-----EEAFLGITDEKTEGQFVDLT   92 (141)
T ss_dssp             HHHHTSEEETTEEEEEEEEE-EEHHHHHHHHHHTTCEECCCCSHHHHHHHHHHCS-----SCEEEEEECSSSTTCCEETT
T ss_pred             hhcCCeEEECCEEEEEeCCC-cCHHHHHHHHHhCCCEECccCCHHHHHHHHHHhc-----CCEEEeeeecCcCCcEEECC
Confidence            58999999999999999884 9999999999999999999999999999998863     67999999988899999999


Q ss_pred             CCCCCccccccCCCCCC-cccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        108 GTNLNELDAAFLPEPAD-NVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       108 gs~~~~~~~~~~~~p~~-~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      |++++| .+|..++|++ .+.++|+.|.. .    ..|.+..|.....|+|+.+
T Consensus        93 G~~~~~-~~W~~g~P~~~~~~~~Cv~~~~-~----g~W~~~~C~~~~~fICe~~  140 (141)
T 1hup_A           93 GNRLTY-TNWNEGEPNNAGSDEDCVLLLK-N----GQWNDVPCSTSHLAVCEFP  140 (141)
T ss_dssp             SCBCSC-CCBCTTCCCCGGGCCCEEEECT-T----SCEEEECTTSEEEEEEEEE
T ss_pred             cCCCcC-CCCCCCCCCCCCCCCCeEEECC-C----CcEeccCCCCCccEEEEEE
Confidence            999987 6777779987 35789999862 2    2455999999999999974

>2ls8_A C-type lectin domain family 4 member D; structural genomics, NEW YORK structural genomics research consortium, nysgrc, PSI-biology, immune system; NMR {Homo sapiens}

Probab=99.80  E-value=2.5e-24  Score=196.31  Aligned_cols=128  Identities=20%  Similarity=0.344  Sum_probs=110.9

Q ss_pred             CCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcC
Q psy14896         28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNED  107 (813)
Q Consensus        28 ~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~d  107 (813)
                      .||.||..|+++||+|+... ++|.+|+..|+.+||+||+|+|++|++||.+++..   ...+||||.+...++.|.|.|
T Consensus         2 ~Cp~gw~~~~~~CY~~~~~~-~tw~~A~~~C~~~g~~La~i~s~~e~~~l~~~~~~---~~~~WIGl~~~~~~~~w~W~d   77 (156)
T 2ls8_A            2 VCPIDWRAFQSNCYFPLTDN-KTWAESERNCSGMGAHLMTISTEAEQNFIIQFLDR---RLSYFLGLRDENAKGQWRWVD   77 (156)
Confidence            59999999999999999995 99999999999999999999999999999998742   356899999988899999999


Q ss_pred             CCCCCc-cccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeecc
Q psy14896        108 GTNLNE-LDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEASI  161 (813)
Q Consensus       108 gs~~~~-~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~~  161 (813)
                      |+++.. +.+|..++|++...++|+.|....+.  +.|.+..|.....|+|++..
T Consensus        78 G~~~~~~~~~W~~g~P~~~~~~~Cv~l~~~~~~--~~W~d~~C~~~~~fICe~~~  130 (156)
T 2ls8_A           78 QTPFNPRRVFWHKNEPDNSQGENCVVLVYNQDK--WAWNDVPCNFEASRICKIPG  130 (156)
Confidence            999842 35777779987668899999765442  45669999999999999953

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.88  E-value=4.9e-23  Score=199.87  Aligned_cols=176  Identities=19%  Similarity=0.311  Sum_probs=135.3

Q ss_pred             ccCCCceeccCCCceEEeCCCCCCCccEEEEccCCCCC----------cccCCCeEEEeeCccEEEEeecccCCeeEEEE
Q psy14896        573 LKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPN----------FVEEDKRVFVSYDGALYFSALEQIDAGNYSCN  642 (813)
Q Consensus       573 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~----------~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  642 (813)
                      ..+....+.+|+.++|.|.+ .+.|.+.+.|+|++..+          ......++.... ++|.|.+++.+|+|.|+|.
T Consensus         9 ~~~~~~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~L~i~~~~~~d~G~Y~C~   86 (209)
T 1nbq_A            9 SSEPEVRIPENNPVKLSCAY-SGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP-TGITFKSVTREDTGTYTCM   86 (209)
T ss_dssp             CSCSBCCEETTCCCEEECEE-ESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET-TEEECSCCCTTSCSEEEEE
T ss_pred             cCCCceEEEcCCCEEEEEEE-eCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeec-cEEEEeeCCHHHCcEEEEE
Confidence            34455667889999999999 68899999999988652          112233444433 7899999999999999999


Q ss_pred             EEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEe-cCCCCCeEEEEeCCcccCCCcee--
Q psy14896        643 VQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVA-FGYPVPSYNWTRRGSPLPRNAYF--  719 (813)
Q Consensus       643 a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~-~g~P~p~i~W~k~g~~l~~~~~~--  719 (813)
                      |.|..|. ......+.|.|..+|......        .+..+.+|+.++|.|.+ .|.|.|.|+|+|+|..+......  
T Consensus        87 ~~~~~g~-~~~~~~~~l~V~~~p~~~~~~--------~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~  157 (209)
T 1nbq_A           87 VSEEGGN-SYGEVKVKLIVLVPPSKPTVN--------IPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTR  157 (209)
T ss_dssp             EEETTSS-CEECCEEECCEEBCCCCCCCC--------CBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSS
T ss_pred             EecCCCC-ccceEEEEEEEecCCcCCCcc--------cccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccce
Confidence            9998763 333445778888877654431        12457899999999997 89999999999999988764321  


Q ss_pred             ---------eecceEEEECCCCCCCCEEEEEEEEcCCCce--EEEEEEEEE
Q psy14896        720 ---------ENFNRILTIPNVKVEDQGEYICRASNDRSAL--ESSVTISIQ  759 (813)
Q Consensus       720 ---------~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~--~~~~~l~V~  759 (813)
                               ....+.|.|.+++.+|+|.|+|.|.|..|..  +..+.|.|.
T Consensus       158 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V~  208 (209)
T 1nbq_A          158 AFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAV  208 (209)
T ss_dssp             SCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEEE
T ss_pred             eeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEEe
Confidence                     2246789999999999999999999999998  445566554

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.88  E-value=1.4e-22  Score=193.61  Aligned_cols=167  Identities=14%  Similarity=0.171  Sum_probs=120.4

Q ss_pred             ccccEEEEee---eccCCCCeEEEeeccccccccccc-------ccccCCCccEEe--e--CCeEEEcCCccccCCeeEE
Q psy14896        208 ILNDITLSCY---AGGYPNPSYEWFKEDYVQDRLVAN-------LIDPLSDKRFTL--S--GGNLIINDPRQVEDRGSYH  273 (813)
Q Consensus       208 ~g~~v~l~C~---~~g~P~p~v~W~k~g~~l~~~~~~-------~~~~~~~~~~~~--~--~~~l~i~~~~~~~d~G~Y~  273 (813)
                      +|++++|.|.   +.+.|.|.|+|||+|..+......       ........++..  .  ..+|.|.+. +.+|+|.|+
T Consensus         7 ~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~   85 (203)
T 4fa8_A            7 LGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAA-NISHDGNYL   85 (203)
T ss_dssp             TTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSC-CGGGCEEEE
T ss_pred             cCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccC-CHHHCeEEE
Confidence            3488999994   678899999999998754321100       001111112221  1  235777775 899999999


Q ss_pred             EEeecCceeeEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCcceEEEeecccccc--ccCCccEEEccCc
Q psy14896        274 CKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNF--VEEDKRVFVSYDG  351 (813)
Q Consensus       274 C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~--~~~~~~~~~~~~~  351 (813)
                      |.|.|..|.. +..+.|.|..+|.+...+....+.+|+.++|.|.+ .|.|.|+|+|++++..+.  .....++.+..+|
T Consensus        86 C~a~n~~g~~-~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~-~G~P~P~v~W~~~~~~~~~~~~~~~r~~~~~~g  163 (203)
T 4fa8_A           86 CRMKLGETEV-TKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTV-NAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDG  163 (203)
T ss_dssp             EEEEETTEEE-EEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEE-EEESCCEEEECCC------------CCEECTTS
T ss_pred             EEEEcCCCcE-EEEEEEEecCCceeeecceeEEEcCCCEEEEEEEc-CCCCCCEEEEEECCeeecCcccccceEEEeCCC
Confidence            9999999987 67788999887777766667778889999999996 789999999998765432  3346678888888


Q ss_pred             cEEE---eeeeecCCeeeEEEEeeecccc
Q psy14896        352 ALYF---SALEQIDAGNYSCNVQSKVSDT  377 (813)
Q Consensus       352 ~L~i---~~v~~~D~G~Y~C~a~n~~g~~  377 (813)
                      +|.|   .++..+|+|.|+|.|.|..|+.
T Consensus       164 ~l~il~i~~v~~~D~G~YtC~A~N~~G~a  192 (203)
T 4fa8_A          164 SLSVAVDLSLPKPWHLPVTCVGKNDKEEA  192 (203)
T ss_dssp             CEEEEEEEEECSSCCCCEEEEEESSSCEE
T ss_pred             CEEEEEECCCCHHHCEEEEEEEEcCCCEE
Confidence            7655   6899999999999999999864

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.88  E-value=7.3e-22  Score=188.11  Aligned_cols=181  Identities=19%  Similarity=0.323  Sum_probs=135.6

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe-eCCeEEEcCCcccc
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL-SGGNLIINDPRQVE  267 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~  267 (813)
                      +|.|...|.+..+.+|     +++.|.|.+.+.|.+.+.|+|++..+.        ...+.++.. .+++|.|.+. +.+
T Consensus         2 ~~~~~~~~~~~~v~~G-----~~v~l~C~~~~~p~~~v~W~~~~~~~~--------~~~~~~~~~~~~~~L~i~~~-~~~   67 (189)
T 2v5t_A            2 MLTFREVVSPQEFKQG-----EDAEVVCRVSSSPAPAVSWLYHNEEVT--------TISDNRFAMLANNNLQILNI-NKS   67 (189)
T ss_dssp             CCEEEECCSSEEEETT-----SCEEECCEEECSSCCEEEEEC-----C--------BCCCTTEEECTTSCEEETTC-CGG
T ss_pred             CceeeccCCCEEEeCC-----CcEEEEEEEcCCCCCEEEEEECCccce--------eccCCeEEEecCCCEEEeeC-CHh
Confidence            5889999999998887     669999999999999999999997653        223444443 4678888885 899


Q ss_pred             CCeeEEEEeecCce-eeEeeeeEEeeeeecccccCCC--CceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCcc
Q psy14896        268 DRGSYHCKASNKFG-SIISESVQLAFGFIGEFNLKRA--PEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKR  344 (813)
Q Consensus       268 d~G~Y~C~a~n~~g-~~~s~~~~l~v~~~~~~~~~~~--~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~  344 (813)
                      |+|.|+|.|.|..+ ...+..+.+.|..+|.+.....  ...+.+|+.++|.|.+ .|.|.+.+.|+++|.++  ....+
T Consensus        68 d~G~Y~C~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~-~g~p~~~v~W~~~g~~~--~~~~~  144 (189)
T 2v5t_A           68 DEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRA-SGSPEPAISWFRNGKLI--EENEK  144 (189)
T ss_dssp             GCEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEE-EEESCCEEEEEETTEEC--CCSSS
T ss_pred             HCcEEEEEEEEcCCCceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEE-ccCCCCeEEEEECCEEC--cCCCc
Confidence            99999999998764 3334567778877776655444  3455678889999996 67799999999999874  33344


Q ss_pred             EEEcc-CccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEc
Q psy14896        345 VFVSY-DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF  389 (813)
Q Consensus       345 ~~~~~-~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~  389 (813)
                      +.+.. +++|.|.++..+|+|.|+|.|.|..|....   .+.|.|.
T Consensus       145 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~---~~~l~V~  187 (189)
T 2v5t_A          145 YILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEK---QAFLQVF  187 (189)
T ss_dssp             EEEETTTTEEEECSCCGGGCEEEEEEEEETTEEEEE---EEEEEEE
T ss_pred             EEEecCCCEEEEcCCChhhCeeEEEEEEeCCCceeE---EEEEEEE
Confidence            44433 558999999999999999999999886443   2556553

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.88  E-value=3.3e-22  Score=189.18  Aligned_cols=161  Identities=16%  Similarity=0.139  Sum_probs=119.6

Q ss_pred             cccccccCCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEEEEeee
Q psy14896        568 IGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV  647 (813)
Q Consensus       568 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~  647 (813)
                      +|.+...+. ..+.+|+.++|.|.+ .+ |.+.+.|+|+|..         ....+++|.|.+++.+|+|.|+|.|.|..
T Consensus         8 ~P~i~~~p~-~~v~~G~~v~L~C~~-~~-~~~~~~W~k~g~~---------~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   75 (184)
T 2gi7_A            8 KPSLQALPS-SLVPLEKPVTLRCQG-PP-GVDLYRLEKLSSS---------RYQDQAVLFIPAMKRSLAGRYRCSYQNGS   75 (184)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEEC-ST-TCSEEEEEETTTC---------CEESSSEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCeEEeCCC-ccccCCCcEEEEEeC-CC-CCCEEEEEECCcc---------ccCcccEEEECcCChhhCceEEEEEEcCC
Confidence            344444333 367899999999998 55 7789999999864         23456789999999999999999999987


Q ss_pred             cCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEE
Q psy14896        648 SDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILT  727 (813)
Q Consensus       648 g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~  727 (813)
                      |... .+..+.|.|...+....+...     . ...+.+|++++|.|.+.+.| +.++|+|+|..+............|.
T Consensus        76 g~~~-~s~~~~l~V~~~~~~p~i~~~-----p-~~~v~~G~~v~l~C~~~~~~-~~~~w~k~g~~~~~~~~~~~~~~~L~  147 (184)
T 2gi7_A           76 LWSL-PSDQLELVATGVFAKPSLSAQ-----P-GPAVSSGGDVTLQCQTRYGF-DQFALYKEGDPAPYKNPERWYRASFP  147 (184)
T ss_dssp             EEBC-CCCCEEEEEESSSCCCEEEEE-----C-CCSSCCTTCEEEEEECSSCC-CEEEEEECCCCTTSCCCCEEEEESSS
T ss_pred             CccC-CCCCEEEEecCcCCCCEEEeC-----C-CceecCCCcEEEEEEcCCCC-cEEEEEECCCcCcceecCCCceEEEE
Confidence            6322 233466777543221111111     1 24678999999999998765 69999999998876443444567899


Q ss_pred             ECCCCCCCCEEEEEEEEcCCC
Q psy14896        728 IPNVKVEDQGEYICRASNDRS  748 (813)
Q Consensus       728 i~~v~~~d~G~Y~C~a~N~~G  748 (813)
                      |.+++.+|+|.|+|.|.|..+
T Consensus       148 i~~v~~~D~G~Y~C~a~n~~~  168 (184)
T 2gi7_A          148 IITVTAAHSGTYRCYSFSSRD  168 (184)
T ss_dssp             EEEETTCCSEEEEEEEECTTS
T ss_pred             EccCCccCCeEEEEEEEeCCC
Confidence            999999999999999999864

>3ff9_A Killer cell lectin-like receptor subfamily G member 1; natural killer cell receptor KLTG1, glycoprotein, membrane, phosphoprotein, signal-anchor; 1.80A {Mus musculus} SCOP: d.169.1.0 PDB: 3ff8_C

Probab=99.88  E-value=1.7e-22  Score=173.67  Aligned_cols=113  Identities=20%  Similarity=0.252  Sum_probs=97.2

Q ss_pred             CCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcC
Q psy14896         28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNED  107 (813)
Q Consensus        28 ~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~d  107 (813)
                      .||.||..|+++||+|+.+. ++|.+|+..|+.+||+||+|+|++|++||.+++.    ...+||||.+   ++.|.|+|
T Consensus         1 ~Cp~gw~~~~~~CY~~~~~~-~~w~~A~~~C~~~g~~La~i~s~~e~~~l~~~~~----~~~~WIGl~~---~~~w~W~d   72 (115)
T 3ff9_A            1 MCPILWTRNGSHCYYFSMEK-KDWNSSLKFCADKGSHLLTFPDNQGVKLFGEYLG----QDFYWIGLRN---IDGWRWEG   72 (115)
T ss_dssp             CCCTTCEEETTEEEEECSSC-BCHHHHHHHHHHTTCEECCCTTSCCHHHHHTTCC----SSCEEEEEEE---SSSEEETT
T ss_pred             CCCccceecCCEEEEEEcCC-cCHHHHHHHHHhcCCeeeeeCCHHHHHHHHHhhC----CCcEEEeeee---CCceEeCC
Confidence            49999999999999999985 9999999999999999999999999999998863    3579999997   56899999


Q ss_pred             CCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        108 GTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       108 gs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      |+++.+  +|   +|++ ..++|+.|...    .  |.+..|.....|+|++.
T Consensus        73 g~~~~~--~~---~p~~-~~~~C~~~~~~----~--w~~~~C~~~~~fICe~~  113 (115)
T 3ff9_A           73 GPALSL--RI---LTNS-LIQRCGAIHRN----G--LQASSCEVALQWICKKV  113 (115)
T ss_dssp             SCBCCS--CC---BCSS-TTCCEEEEETT----E--EEEECTTSCBEEEEEEE
T ss_pred             CCcccc--cc---cCCC-CCCCCeEEcCC----C--cccccCCCCCceEEEEe
Confidence            999987  33   3333 46899998652    2  55999999999999984

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.87  E-value=1.5e-22  Score=193.87  Aligned_cols=179  Identities=13%  Similarity=0.174  Sum_probs=125.6

Q ss_pred             cccccCCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEEEEeeecC
Q psy14896        570 EFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSD  649 (813)
Q Consensus       570 ~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  649 (813)
                      .+...+.. .+.+|+.++|.|.+ .+ |.+.+.|+|++.++............+++|.|.+++.+|+|.|+|.|.|..|.
T Consensus         7 ~i~~~p~~-~v~~G~~v~L~C~~-~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~   83 (196)
T 3p2t_A            7 TLWAEPGS-VISWGNSVTIWCQG-TL-EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGW   83 (196)
T ss_dssp             EEEEESCS-EEETTCCEEEEEEC-CT-TCCEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             EEEccCCC-cCCCCCcEEEEeeC-CC-CCCEEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeCCCcc
Confidence            33344444 67889999999998 55 77899999999764321110000123457999999999999999999998873


Q ss_pred             ccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCce-----eeecce
Q psy14896        650 TGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAY-----FENFNR  724 (813)
Q Consensus       650 ~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~-----~~~~~~  724 (813)
                      .. .+..+.|.|...+....+....      ...+.+|++++|.|.+.+ +++.+.|+|+|..+.....     ......
T Consensus        84 ~~-~s~~~~l~V~~~~~~p~~~~~~------~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~  155 (196)
T 3p2t_A           84 SQ-PSDPLELVMTGAYSKPTLSALP------SPLVTSGKSVTLLCQSRS-PMDTFLLCKERAAHPLLCLRSEHGAQQHQA  155 (196)
T ss_dssp             BC-CCCCEEEEEECSSCCCEEEEES------CSEECTTCCEEEEEEEEE-EEEEEEEEETTCCCGGGSEEEEEEEEEEEE
T ss_pred             cC-CCccEEEEecCCCCCCEEEeCC------cceecCCCeEEEEEecCC-CCCEEEEEeCCCcccceeecccccccCcce
Confidence            22 2334677776543222222111      125689999999999988 4569999999987754331     123457


Q ss_pred             EEEECCCCCCCCEEEEEEEEcCCC-----ceEEEEEEEEE
Q psy14896        725 ILTIPNVKVEDQGEYICRASNDRS-----ALESSVTISIQ  759 (813)
Q Consensus       725 ~L~i~~v~~~d~G~Y~C~a~N~~G-----~~~~~~~l~V~  759 (813)
                      .|.|.+++.+|+|.|+|.|.|..+     ..+..+.|.|.
T Consensus       156 ~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~  195 (196)
T 3p2t_A          156 EFPMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPLELIVS  195 (196)
T ss_dssp             EEEECSCCGGGCEEEEEEEECGGGTTEECCCCCCEEEEEC
T ss_pred             EEEeCCCcccCCCeEEEEEEcCCCCcccCCCCCCEEEEeC
Confidence            899999999999999999999976     34556677664

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.87  E-value=2e-22  Score=196.72  Aligned_cols=181  Identities=24%  Similarity=0.375  Sum_probs=136.9

Q ss_pred             ccccccCCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEEEEeeec
Q psy14896        569 GEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVS  648 (813)
Q Consensus       569 p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  648 (813)
                      +.+...+....+.+|+.++|.|.+ .+.|.+.|.|+|++.++...        .+++|.|.+++.+|+|.|+|.|.|..|
T Consensus        19 ~~i~~~p~~~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~~~n~~~   89 (218)
T 3k0w_A           19 SKITVNPESKAVLAGQFVKLCCRA-TGHPFVQYQWFKMNKEIPNG--------NTSELIFNAVHVKDAGFYVCRVNNNFT   89 (218)
T ss_dssp             CCEEECCCCEEEETTSBEEEECEE-TTTTSSEEEEEETTEECTTC--------CSSEEEETTCCGGGCEEEEEEEECTTC
T ss_pred             CEEEECCCCeEEeCCCcEEEEeee-cCCCCCEEEEEECCEECCCC--------CCCEEEEccCChhhCeEeEEEEEcCCC
Confidence            345555667778899999999999 78899999999998753221        356799999999999999999999876


Q ss_pred             CccccCceeeEEEccCCCcccccc-------CCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeee
Q psy14896        649 DTGRNGPFFPLKVFPHSNFQQLKF-------PNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFEN  721 (813)
Q Consensus       649 ~~~~~~~~~~l~v~~~p~~~~~~~-------p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~  721 (813)
                      ...  ...+.|.|...+.......       |..........+.+|+.++|.|.+.|.|.|.|+|+|+|..+....    
T Consensus        90 ~~~--s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~----  163 (218)
T 3k0w_A           90 FEF--SQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET----  163 (218)
T ss_dssp             CEE--CCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTCC----
T ss_pred             Cce--eeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCCC----
Confidence            432  2346777776643211110       111112223567899999999999999999999999999887653    


Q ss_pred             cceEEEECCCCCCCCEEEEEEEEcCCCc-eEEEEEEEEEcCCccc
Q psy14896        722 FNRILTIPNVKVEDQGEYICRASNDRSA-LESSVTISIQAEPNFT  765 (813)
Q Consensus       722 ~~~~L~i~~v~~~d~G~Y~C~a~N~~G~-~~~~~~l~V~~~P~~~  765 (813)
                       ...|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|...+.+.
T Consensus       164 -~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~~~~~  207 (218)
T 3k0w_A          164 -KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLG  207 (218)
T ss_dssp             -SSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC-----
T ss_pred             -CCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeCCccCC
Confidence             468999999999999999999999998 6778899998755443

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.87  E-value=2.9e-22  Score=192.28  Aligned_cols=180  Identities=13%  Similarity=0.097  Sum_probs=122.7

Q ss_pred             ccccccCCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEEEEeee-
Q psy14896        569 GEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV-  647 (813)
Q Consensus       569 p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~-  647 (813)
                      |.+...+. ..+.+|+.++|.|.+ .+.|. .+.|+|+|.++............+++|.|.+++.+|+|.|+|.|.|.. 
T Consensus         6 P~i~~~p~-~~v~~G~~v~L~C~~-~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~   82 (198)
T 1ugn_A            6 PTLWAEPG-SVITQGSPVTLRCQG-GQETQ-EYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDTA   82 (198)
T ss_dssp             CEEEEESC-SEEETTCCEEEEEEC-CTTCC-CEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEETTT
T ss_pred             CeEeccCC-CcccCCCcEEEEEEe-cCCCc-EEEEEECCccccccccccccCCcccEEEECCCCHHHCeEEEEEEECCCC
Confidence            33443333 367889999999999 56665 799999997643211111112345679999999999999999999987 


Q ss_pred             cCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCcee---e---e
Q psy14896        648 SDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF---E---N  721 (813)
Q Consensus       648 g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~---~---~  721 (813)
                      |... .+..+.|.|...+....+..+      ....+.+|++++|.|.+.|. .|.|+|+|+|..+......   .   .
T Consensus        83 g~~~-~s~~~~l~V~~~~~~p~i~~~------~~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~~~~~~  154 (198)
T 1ugn_A           83 GRSE-SSDPLELVVTGAYIKPTLSAQ------PSPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQPHARGS  154 (198)
T ss_dssp             EECC-CCCCEEEEEECSSCCCEEEEE------SCSEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC------C
T ss_pred             Cccc-CCccEEEEEcccccCCccccC------CccccCCCCcEEEEEecCCC-CcEEEEEECCCccCCccccccccCCCc
Confidence            5322 233467888763322222111      11467899999999999998 6799999999987543321   1   1


Q ss_pred             cceEEEECCCCCCCCEEEEEEEEcCCCc-----eEEEEEEEEE
Q psy14896        722 FNRILTIPNVKVEDQGEYICRASNDRSA-----LESSVTISIQ  759 (813)
Q Consensus       722 ~~~~L~i~~v~~~d~G~Y~C~a~N~~G~-----~~~~~~l~V~  759 (813)
                      ....|+|.+++.+|+|.|+|.|.|..+.     .+..+.|.|.
T Consensus       155 ~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~  197 (198)
T 1ugn_A          155 SRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLVL  197 (198)
T ss_dssp             CEEEEEECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEEE
T ss_pred             ceeEEEecccCcccCeEEEEEEEeCCCCccccCcCceEEEEec
Confidence            2478999999999999999999998762     2566777775

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.87  E-value=2.7e-22  Score=192.85  Aligned_cols=165  Identities=18%  Similarity=0.231  Sum_probs=125.8

Q ss_pred             ccccCCCceeccCCCceEEeCCCCCCCccE-EEEccCCCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEEEEeeecC
Q psy14896        571 FNLKRAPEIGNQNWGKAMFCDPPTNYPGVN-YYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSD  649 (813)
Q Consensus       571 ~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~-v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  649 (813)
                      +...+....+.+|+.++|.|.+ .+.|.+. |.|+|+|..+  ..       ..++|.|.+++.+|+|.|+|.|.|... 
T Consensus        10 i~~~p~~~~v~~G~~v~L~C~~-~~~p~~~~v~W~k~g~~l--~~-------~~~~L~i~~v~~~D~G~Y~C~a~n~~~-   78 (204)
T 3sgj_C           10 VFLEPQWYRVLEKDSVTLKCQG-AYSPEDQSTQWFHNESLI--SS-------QASSYFIDAATVDDSGEYRCQTQLSTL-   78 (204)
T ss_dssp             EEEESCCSEEETTCCEEEEEEC-CSSSSCCCEEEEETTEEE--SC-------CSSEEEESSCCGGGCEEEEEEETTSBC-
T ss_pred             EEEcCCCeEEECCCCEEEEEcC-CCCCCCcEEEEEECCEEc--cc-------CccEEEEecccccCCEEEEEEeCCCcc-
Confidence            3344444678899999999999 6777665 9999998652  21       127899999999999999999987432 


Q ss_pred             ccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCC-CCCeEEEEeCCcccCCCceeeecceEEEE
Q psy14896        650 TGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGY-PVPSYNWTRRGSPLPRNAYFENFNRILTI  728 (813)
Q Consensus       650 ~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~-P~p~i~W~k~g~~l~~~~~~~~~~~~L~i  728 (813)
                          +..+.|.|..+|.+...  |       ...+.+|++++|.|.+.+. |.+.|+|+|||..+..    ....+.|.|
T Consensus        79 ----s~~~~l~V~~~p~~~~~--~-------~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~----~~~~~~L~i  141 (204)
T 3sgj_C           79 ----SDPVQLEVHIGWLLLQA--P-------RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKY----FHHNSDFYI  141 (204)
T ss_dssp             ----CCCEEEEEECSSEEEEC--S-------CSEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEE----EEECCCEEE
T ss_pred             ----cccEEEEEecCceEecC--C-------ceeEeCCCcEEEEEEecCCCCCceEEEEECCcEeec----ccCCceEEE
Confidence                23467888877643321  1       1457889999999999765 5689999999998643    223678999


Q ss_pred             CCCCCCCCEEEEEEEEc-CCCceEEEEEEEEEcCCc
Q psy14896        729 PNVKVEDQGEYICRASN-DRSALESSVTISIQAEPN  763 (813)
Q Consensus       729 ~~v~~~d~G~Y~C~a~N-~~G~~~~~~~l~V~~~P~  763 (813)
                      .+++.+|+|.|+|.|.| ..+..+..+.|.|.++|.
T Consensus       142 ~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~  177 (204)
T 3sgj_C          142 PKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLA  177 (204)
T ss_dssp             SSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---
T ss_pred             CcCCcccCEEEEEEEEeCCCceecCcEEEEEeCcCC
Confidence            99999999999999999 445677789999997764

>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*

Probab=99.87  E-value=1.5e-22  Score=182.74  Aligned_cols=121  Identities=12%  Similarity=0.053  Sum_probs=106.5

Q ss_pred             CCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcC
Q psy14896         28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNED  107 (813)
Q Consensus        28 ~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~d  107 (813)
                      .||.||..|+++||+|+... ++|.+|+..|+.+||+||+|+|++|++||.+++.     ..+||||.+...++.|.|.|
T Consensus        27 ~~~~~w~~~~~~Cy~~~~~~-~tw~~A~~~C~~~g~~La~i~s~~e~~~l~~~~~-----~~~WIGl~~~~~~~~w~W~d  100 (149)
T 1rtm_1           27 HAFSMGKKSGKKFFVTNHER-MPFSKVKALCSELRGTVAIPRNAEENKAIQEVAK-----TSAFLGITDEVTEGQFMYVT  100 (149)
T ss_dssp             HHHHTTCCTTSCEEEEEEEE-EEHHHHHHHHHHTTCEECCCCSHHHHHHHHHHHS-----SCEEEEEECSSSTTCCEETT
T ss_pred             hcCCCeEEeCCEEEEEeCCC-CCHHHHHHHHHhCCCEEeeeCCHHHHHHHHHHhc-----CCEEEEeeccCcCCeEEECC
Confidence            48899999999999999884 9999999999999999999999999999998872     57899999988899999999


Q ss_pred             CCCCCccccccCCCCCC-cccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        108 GTNLNELDAAFLPEPAD-NVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       108 gs~~~~~~~~~~~~p~~-~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      |++++| .+|..++|++ .+.++|+.|.. .    ..|.+..|.....|+|+.+
T Consensus       101 g~~~~~-~~W~~g~P~~~~~~~~Cv~~~~-~----g~W~d~~C~~~~~fICe~~  148 (149)
T 1rtm_1          101 GGRLTY-SNWKKDEPNDHGSGEDCVTIVD-N----GLWNDISCQASHTAVCEFP  148 (149)
T ss_dssp             SSBCCS-CCBCTTCCCCCTTCCCEEEECG-G----GCEEEECTTSEEEEEEEEC
T ss_pred             CCCccc-cCcCCCCCCCCCCCCCeEEECC-C----CCEeCCCCCCCeeEEEEee
Confidence            999987 6777779987 44689999862 2    2455999999999999984

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.87  E-value=1.9e-22  Score=189.42  Aligned_cols=169  Identities=20%  Similarity=0.243  Sum_probs=128.4

Q ss_pred             ecccccccCCCceeccCCCceEEeCCCCCCCcc-EEEEccCCCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEEEEe
Q psy14896        567 FIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGV-NYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQS  645 (813)
Q Consensus       567 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n  645 (813)
                      .+|.+...+....+.+|+.++|.|.+ .+.|.+ .+.|+|++..+.         ..+++|.|.+++.+|+|.|+|.|.|
T Consensus         3 ~~P~i~~~p~~~~v~~G~~v~L~C~~-~~~~~~~~i~W~~~~~~~~---------~~~~~L~i~~v~~~d~G~Y~C~~~~   72 (176)
T 1f2q_A            3 QKPKVSLNPPWNRIFKGENVTLTCNG-NNFFEVSSTKWFHNGSLSE---------ETNSSLNIVNAKFEDSGEYKCQHQQ   72 (176)
T ss_dssp             -CCCCEEESSCSEEETTCCEEEECCT-TCC----CCEEEETTEECS---------CCSSEEEECSCCGGGCEEEEEECTT
T ss_pred             CCCEEEcCCCCcceecCCcEEEEEeC-CCCCCcceEEEEECCeECC---------CCceEEEEeccceecCEEEEEEcCC
Confidence            34555566666678999999999999 566664 699999986532         1356899999999999999999988


Q ss_pred             eecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEec-CCCCCeEEEEeCCcccCCCceeeecce
Q psy14896        646 KVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF-GYPVPSYNWTRRGSPLPRNAYFENFNR  724 (813)
Q Consensus       646 ~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~-g~P~p~i~W~k~g~~l~~~~~~~~~~~  724 (813)
                      ..+.     ..+.|.|..++....  .+       ...+.+|++++|.|.+. +.|.|.++|+|+|..+...    ..+.
T Consensus        73 ~~~s-----~~~~l~V~~~~~~~~--~~-------~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~----~~~~  134 (176)
T 1f2q_A           73 VNES-----EPVYLEVFSDWLLLQ--AS-------AEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW----YENH  134 (176)
T ss_dssp             SSCC-----CCEEEEEECSSEEEE--ES-------CSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSC----CCSS
T ss_pred             cccc-----ccEEEEEeCcceeec--CC-------cceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeee----cCCC
Confidence            5532     236677774443221  11       14578999999999995 6777899999999988532    2367


Q ss_pred             EEEECCCCCCCCEEEEEEEEcCCC-ceEEEEEEEEEcCCc
Q psy14896        725 ILTIPNVKVEDQGEYICRASNDRS-ALESSVTISIQAEPN  763 (813)
Q Consensus       725 ~L~i~~v~~~d~G~Y~C~a~N~~G-~~~~~~~l~V~~~P~  763 (813)
                      .|.|.+++.+|+|.|+|.|.|..| ..+..+.|.|.++|.
T Consensus       135 ~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~  174 (176)
T 1f2q_A          135 NISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPR  174 (176)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred             eEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEecCCC
Confidence            899999999999999999999754 456679999999885

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.87  E-value=1e-22  Score=190.66  Aligned_cols=159  Identities=13%  Similarity=0.073  Sum_probs=122.4

Q ss_pred             eeccCCCceEEeCC-CCCCCccEEEEccCCCCC--------cccCCCeEEEeeCccEEEEeecccCCeeEEEEEEeeecC
Q psy14896        579 IGNQNWGKAMFCDP-PTNYPGVNYYWARDYFPN--------FVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSD  649 (813)
Q Consensus       579 ~~~~g~~~~l~C~~-~~~~p~~~v~W~k~~~~~--------~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  649 (813)
                      .+.+|+.++|.|.. +...|.+.|.|+|++..+        ......|+.+..+|+|.|.+++.+|+|.|+|.|.|..|.
T Consensus         7 ~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~~g~   86 (176)
T 1hng_A            7 WGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGT   86 (176)
T ss_dssp             EEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTCC
T ss_pred             EEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCEEEEEEEEeCCCC
Confidence            45789999999954 234677899999998532        123467888888899999999999999999999998876


Q ss_pred             ccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEEC
Q psy14896        650 TGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIP  729 (813)
Q Consensus       650 ~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~  729 (813)
                      .. ....+.|.|..++....+             ...+.+++|.|.+.|.|+|.|+|+|+|.+|..+.       .+.|.
T Consensus        87 ~~-~~~~~~l~V~~~~~~p~i-------------~~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~-------~~~i~  145 (176)
T 1hng_A           87 RI-LNKALDLRILEMVSKPMI-------------YWECSNATLTCEVLEGTDVELKLYQGKEHLRSLR-------QKTMS  145 (176)
T ss_dssp             EE-EEEEEEEEEECCCCCCEE-------------EEETTTTEEEEECSSCSSCEEEEEETTEEEEEES-------SSEEE
T ss_pred             EE-EEEEEEEEEeCCCCCCEE-------------EecCCcEEEEEEecCCCCcEEEEEECCEECCCCC-------cEEEE
Confidence            41 123467777765432211             1224569999999999999999999999886543       24566


Q ss_pred             CCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896        730 NVKVEDQGEYICRASNDRSALESSVTISI  758 (813)
Q Consensus       730 ~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  758 (813)
                      ++..+|+|.|+|.|.|.+|..++.+.|.+
T Consensus       146 ~~~~~d~G~Y~C~a~N~~g~~~~~~~l~~  174 (176)
T 1hng_A          146 YQWTNLRAPFKCKAVNRVSQESEMEVVNC  174 (176)
T ss_dssp             EECSCCSSCEEEEEEETTEEEEEEECCCC
T ss_pred             EEEccCCeEEEEEEEecCCCceecccccC
Confidence            78899999999999999999998887765

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.87  E-value=1e-21  Score=188.57  Aligned_cols=179  Identities=18%  Similarity=0.327  Sum_probs=138.4

Q ss_pred             CCCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEee-CC---eEEEcCC
Q psy14896        188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS-GG---NLIINDP  263 (813)
Q Consensus       188 ~~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~-~~---~l~i~~~  263 (813)
                      .+|.|...|.++.+.+|     +++.|.|.+.|.|.+.+.|||++..+.          ...++... ++   +|.|.+.
T Consensus         6 ~~P~~~~~~~~~~v~~G-----~~v~l~C~~~~~p~~~v~W~~~~~~~~----------~~~~~~~~~~~~~~~L~i~~~   70 (197)
T 3lcy_A            6 EAPGIRKEMKDVTTKLG-----EAAQLSCQIVGRPLPDIKWYRFGKELI----------QSRKYKMSSDGRTHTLTVMTE   70 (197)
T ss_dssp             EEEEEEECCCCEEEETT-----SEEEEEEEEEEESCCEEEEEETTEEEC----------CCSSEEEEESSSEEEEEEECC
T ss_pred             CCCcccccCCceEEeCC-----CcEEEEEEEecCCCCEEEEEECCEECC----------CCccEEEEeCCCEEEEEEecC
Confidence            46889999999998887     669999999999999999999998762          22233322 33   6888885


Q ss_pred             ccccCCeeEEEEeecCceeeEeeeeEEeeeeecccccC---CCCceeecCCCeEEEecCCCCCCcceEEEeecccccccc
Q psy14896        264 RQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK---RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVE  340 (813)
Q Consensus       264 ~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~---~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~  340 (813)
                       +.+|+|.|+|.|.|..|.. +..+.|.|...|.+...   .....+..|+.+.|.|.+ .+.|.+.+.|++++.++  .
T Consensus        71 -~~~d~G~Y~C~~~n~~~~~-~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~p~v~W~~~~~~~--~  145 (197)
T 3lcy_A           71 -EQEDEGVYTCIATNEVGEV-ETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMY-IGRPVPAMTWFHGQKLL--Q  145 (197)
T ss_dssp             -SGGGCEEEEEEEECSSCEE-EEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEE-EEESCCEEEEEETTEEC--C
T ss_pred             -CccCCEEEEEEEECCCCce-eEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEE-eeeeCCeeEEeECCEEC--C
Confidence             8999999999999998876 56788888777765433   233456789999999996 67899999999999874  3


Q ss_pred             CCccEEEccC---ccEEEeeeee-cCCeeeEEEEeeeccccCCCCCceeeEEc
Q psy14896        341 EDKRVFVSYD---GALYFSALEQ-IDAGNYSCNVQSKVSDTGRNGPFFPLKVF  389 (813)
Q Consensus       341 ~~~~~~~~~~---~~L~i~~v~~-~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~  389 (813)
                      ...++.+...   +.|.|.++.. +|+|.|+|.|.|..|....   .+.|.|.
T Consensus       146 ~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~---~~~l~V~  195 (197)
T 3lcy_A          146 NSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDA---ILDVEIQ  195 (197)
T ss_dssp             CCSSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEEEE---EEEEEEE
T ss_pred             CCCceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCceEE---EEEEEEe
Confidence            4445554444   4799999995 8999999999999886432   3566654

>3hup_A Early activation antigen CD69; C-type lectin-like domain, disulfide bond, glycoprotein, LEC membrane, phosphoprotein, signal-anchor, transmembrane; 1.37A {Homo sapiens} SCOP: d.169.1.1 PDB: 1e87_A 1e8i_A 3cck_A

Probab=99.87  E-value=5.6e-22  Score=174.63  Aligned_cols=117  Identities=16%  Similarity=0.340  Sum_probs=99.0

Q ss_pred             ccCCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeE
Q psy14896         25 LELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWV  104 (813)
Q Consensus        25 ~~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~  104 (813)
                      ....||.||..|+++||+|+.. .++|.+|+..|+.+||+||+|++++|++||.+++.    ...+||||.+. .++.|.
T Consensus        12 ~~~~Cp~gw~~~~~~CY~~~~~-~~~w~~A~~~C~~~g~~La~i~s~~e~~~l~~~~~----~~~~WIGl~~~-~~~~w~   85 (130)
T 3hup_A           12 HVSSCSEDWVGYQRKCYFISTV-KRSWTSAQNACSEHGATLAVIDSEKDMNFLKRYAG----REEHWVGLKKE-PGHPWK   85 (130)
T ss_dssp             CCBCCCTTCEEETTEEEEECSS-CBCHHHHHHHHHTTTCEECCCCSHHHHHHHHHHHT----TSCEEEEEEEC-TTSCEE
T ss_pred             CCCCCChhheecCCEEEEEECC-ccCHHHHHHHHHhcCCEEeecCCHHHHHHHHHhhC----CCCEEEEEEeC-CCCeEE
Confidence            4567999999999999999998 49999999999999999999999999999999873    35789999984 678999


Q ss_pred             EcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        105 NEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       105 W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      |+||+++.   +|. .   ....++|+.|...    .  |.+..|.....|+|+++
T Consensus        86 W~dg~~~~---~w~-~---~~~~~~Cv~~~~~----~--w~~~~C~~~~~fICe~~  128 (130)
T 3hup_A           86 WSNGKEFN---NWF-N---VTGSDKCVFLKNT----E--VSSMECEKNLYWICNKP  128 (130)
T ss_dssp             ETTSCBCC---CCS-C---CCSSCSEEEEETT----E--EEEECTTSCBEEEEEEE
T ss_pred             eCCCCccc---Ccc-C---CCCCCCceEEeCC----C--cccCCCCCCccEEeccC
Confidence            99999843   454 2   2236899998642    3  55999999999999985

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.87  E-value=3.7e-22  Score=191.54  Aligned_cols=169  Identities=10%  Similarity=0.181  Sum_probs=126.7

Q ss_pred             eccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEE-eeCccEEEEeecccCCeeEEEEEEeeecCccccCceee
Q psy14896        580 GNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFV-SYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFP  658 (813)
Q Consensus       580 ~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~  658 (813)
                      +.+|+.++|.|.+ .|.|.+.|.|+++... .+  ..+... ..+++|.|.+++.+|+|.|+|.|.|..|..   ...+.
T Consensus        13 ~~~G~~v~L~C~~-~g~P~p~i~W~~~~~~-~~--~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~---~~~~~   85 (202)
T 1vca_A           13 AQIGDSVSLTCST-TGCESPFFSWRTQIDS-PL--NGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKL---EKGIQ   85 (202)
T ss_dssp             EETTSCEEEEEEE-ESCSSCEEEEEETTCC-CC--SSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEE---EEEEE
T ss_pred             EcCCCcEEEEEee-cCCCCCeEEEECCCCC-Cc--cceEEEcCCccEEEECcCCHHHCEEEEEEEEECCceE---eeEEE
Confidence            3489999999999 7899999999984321 01  122222 234569999999999999999999987653   33578


Q ss_pred             EEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCC---CeEEEEeCCcccCCCcee--------eecceEEE
Q psy14896        659 LKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPV---PSYNWTRRGSPLPRNAYF--------ENFNRILT  727 (813)
Q Consensus       659 l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~---p~i~W~k~g~~l~~~~~~--------~~~~~~L~  727 (813)
                      |.|..+|....+..        ...+.+|+.++|.|.+.|.|+   +.|+|+|+|..|......        ......|.
T Consensus        86 l~V~~~p~~~~~~~--------~~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l~  157 (202)
T 1vca_A           86 VEIYSFPKDPEIHL--------SGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVT  157 (202)
T ss_dssp             EEEEBCCSCCEEEE--------SSCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEE
T ss_pred             EEEEeCCCCCEeCC--------ceEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEEEE
Confidence            89988776544321        145789999999999998643   379999999987543211        12234578


Q ss_pred             ECCCCCCCCEEEEEEEEcCCCc-------eEEEEEEEEEcCCc
Q psy14896        728 IPNVKVEDQGEYICRASNDRSA-------LESSVTISIQAEPN  763 (813)
Q Consensus       728 i~~v~~~d~G~Y~C~a~N~~G~-------~~~~~~l~V~~~P~  763 (813)
                      |..+..+|+|.|+|+|.|.+|.       .+.++.|.|..||.
T Consensus       158 i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~  200 (202)
T 1vca_A          158 FTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPK  200 (202)
T ss_dssp             ECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred             EEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCCC
Confidence            9988889999999999999886       46789999999986

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.87  E-value=9.4e-22  Score=186.03  Aligned_cols=175  Identities=17%  Similarity=0.254  Sum_probs=134.1

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEee----CCeEEEcCCc
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS----GGNLIINDPR  264 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~  264 (813)
                      +|.|+..|.+..+.+|     +++.|.|.+.|.|.+.+.|+|+|..+....        ..+....    .++|.|.+. 
T Consensus         2 ~~~~~~~p~~~~v~~G-----~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~--------~~~~~~~~~~~~~~L~i~~~-   67 (182)
T 1rhf_A            2 GLKLMGAPVKLTVSQG-----QPVKLNCSVEGMEEPDIQWVKDGAVVQNLD--------QLYIPVSEQHWIGFLSLKSV-   67 (182)
T ss_dssp             -----CCCEEEEEETT-----CCEEEEEEEESCSSCCEEEEETTEECCSSE--------EEEEEEETTEEEEEEEESSC-
T ss_pred             CCEEEeCCcceEEeCC-----CcEEEEEEEeCCCCCeEEEEECCeecCCCC--------ceEEEecCCCceEEEEEeec-
Confidence            4678888899888887     669999999999999999999998763211        1111122    256788875 


Q ss_pred             cccCCeeEEEEeecCceeeEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCcc-eEEEeeccccccccCCc
Q psy14896        265 QVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGV-NYYWARDYFPNFVEEDK  343 (813)
Q Consensus       265 ~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~-~v~W~k~~~~~~~~~~~  343 (813)
                      +.+|+|.|+|.|.|..|...+..+.|.|..+|.+...+....+.+|+.+.|.|.+ .|.|.+ .+.|++++..+...  .
T Consensus        68 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~~v~W~~~~~~~~~~--~  144 (182)
T 1rhf_A           68 ERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEA-VGPPEPVTIVWWRGTTKIGGP--A  144 (182)
T ss_dssp             CGGGCEEEEEEESSCTTCEECCCEEEEEECSCEEEECCCCEEECTTCCEEEEEEE-ECSSSCCEEEEEETTEECSCS--E
T ss_pred             CcccCeEEEEEEEcCCCcEEEEEEEEEEecCCeEEecCcceEecCCCEEEEEeEe-cCCCCCCEEEEEcCCeECCCC--C
Confidence            8999999999999998876678899999988888777777788999999999996 678998 99999999874221  1


Q ss_pred             cEEEccCccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEE
Q psy14896        344 RVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKV  388 (813)
Q Consensus       344 ~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v  388 (813)
                          ...+.|.|.++  +|+|.|+|.|.|..|...  +..+.|.|
T Consensus       145 ----~~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~--s~~~~l~V  181 (182)
T 1rhf_A          145 ----PSPSVLNVTGV--TQSTMFSCEAHNLKGLAS--SRTATVHL  181 (182)
T ss_dssp             ----ESSEEEEECCC--SSCEEEEEEEEETTEEEE--CCCEEEEE
T ss_pred             ----CCceEEEEecc--ccCeEEEEEEECCCCCcc--cceEEEEe
Confidence                15568999998  599999999999988542  23366665

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.87  E-value=2.2e-22  Score=196.43  Aligned_cols=184  Identities=23%  Similarity=0.271  Sum_probs=135.6

Q ss_pred             ecccccccCCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCC-CeEEEeeCccE----EEEeecccCCeeEEE
Q psy14896        567 FIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEED-KRVFVSYDGAL----YFSALEQIDAGNYSC  641 (813)
Q Consensus       567 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~-~~~~~~~~~~L----~i~~~~~~d~G~Y~C  641 (813)
                      .+|.+...+....+.+|+.++|.|.+ .+.|.+.|.|+|+|.++..... .......++.+    .|.+++.+|+|.|+|
T Consensus         8 ~~P~i~~~p~~~~v~~G~~v~L~C~~-~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C   86 (217)
T 2vr9_A            8 QSPRIIEHPTDLVVKKNEPATLNCKV-EGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWC   86 (217)
T ss_dssp             CCCEEEECCCCEEECTTSCEEECCEE-ECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEE
T ss_pred             CCCEEecCCCceEEeCCCcEEEEEEc-CCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEE
Confidence            34556566667778899999999999 7889999999999976543321 12222334443    688999999999999


Q ss_pred             EEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEe-cCCCCCeEEEEeCCcccCCCc---
Q psy14896        642 NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVA-FGYPVPSYNWTRRGSPLPRNA---  717 (813)
Q Consensus       642 ~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~-~g~P~p~i~W~k~g~~l~~~~---  717 (813)
                      .|.|..|.....  .+.|.|...+.....       ......+.+|+.++|.|.+ .|.|.|.|+|+|+|..+....   
T Consensus        87 ~~~n~~g~~~~~--~~~l~v~~~~~~~~~-------~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~  157 (217)
T 2vr9_A           87 VAKNRVGQAVSR--HASLQIAVLRDDFRV-------EPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMS  157 (217)
T ss_dssp             EEEETTEEEECC--CEEEEECEECCSCSB-------CCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC-
T ss_pred             EEecCCCccccc--cceEEEEEeCCCcEE-------CCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccc
Confidence            999988754332  345666543221111       1223567899999999999 899999999999999887322   


Q ss_pred             -----ee-eecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEc
Q psy14896        718 -----YF-ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQA  760 (813)
Q Consensus       718 -----~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  760 (813)
                           ++ ....+.|.|.+++.+|+|.|+|.|.|..|..+.++.+.+..
T Consensus       158 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~~  206 (217)
T 2vr9_A          158 FGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQ  206 (217)
T ss_dssp             --CCCSEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             cccCCcEEecCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEEEE
Confidence                 21 22356899999999999999999999999988776666653

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.87  E-value=9.3e-22  Score=187.48  Aligned_cols=177  Identities=20%  Similarity=0.351  Sum_probs=135.3

Q ss_pred             CCceeeCCCceeecC-CCccccccEEEEeeeccCCC--CeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCcc
Q psy14896        189 GPYFIKQPTDVVFDL-SKRSILNDITLSCYAGGYPN--PSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQ  265 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~-g~~~~g~~v~l~C~~~g~P~--p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~  265 (813)
                      ||.|... ....+.+ |     +++.|.|.+.+.|.  +.+.|+|+|..+..          + +....+++|.|.+. +
T Consensus         3 ~P~i~~~-~~~~v~~~G-----~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~----------~-~~~~~~~~L~i~~~-~   64 (190)
T 2wv3_A            3 EPRIVTS-EEVIIRDSL-----LPVTLQCNLTSSSHTLMYSYWTKNGVELTA----------T-RKNASNMEYRINKP-R   64 (190)
T ss_dssp             CCEEEEC-CCEECCCSS-----SCEEEEEEEEECSSCEEEEEEEETTEECTT----------C-CBCCSEEEEEESSC-C
T ss_pred             CCccccc-ceEEEccCC-----ceEEEEEEeccCCCCceEEEEEECCEECcc----------c-ceEeccEEEEEecC-C
Confidence            5777774 4455444 4     77999999998887  89999999987632          1 11124567888885 8


Q ss_pred             ccCCeeEEEEeecCceeeEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCcceEEEee--ccccccc-cCC
Q psy14896        266 VEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWAR--DYFPNFV-EED  342 (813)
Q Consensus       266 ~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k--~~~~~~~-~~~  342 (813)
                      .+|+|.|+|.|.|. |.. +..+.|.|..+|.+........+.+|+.+.|.|.+ .|.|.+.+.|++  ++.++.. ...
T Consensus        65 ~~d~G~Y~C~~~n~-~~~-~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~-~g~p~p~i~W~~~~~g~~~~~~~~~  141 (190)
T 2wv3_A           65 AEDSGEYHCVYHFV-SAP-KANATIEVKAAPDITGHKRSENKNEGQDAMMYCKS-VGYPHPEWMWRKKENGVFEEISNSS  141 (190)
T ss_dssp             GGGCEEEEEEEEET-TEE-EEEEEEEEECCCEEEEECSEEEEETTSCEEEEEEE-ECSSCCEEEEEEEETTEEEECCCTT
T ss_pred             cccCEEEEEEEEeC-Ccc-cccEEEEEecCCcccccCCcceeeCCCcEEEEEEe-CccCCCceEEEEcCCCceeeeecCC
Confidence            99999999999998 655 77889999888887777777788999999999996 788999999999  5655322 144


Q ss_pred             ccEEEccCc---cEEEeeee-ecCCeeeEEEEeeeccccCCCCCceeeEEc
Q psy14896        343 KRVFVSYDG---ALYFSALE-QIDAGNYSCNVQSKVSDTGRNGPFFPLKVF  389 (813)
Q Consensus       343 ~~~~~~~~~---~L~i~~v~-~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~  389 (813)
                      .++.+..++   +|.|.++. .+|+|.|+|.|.|..|....   .+.|.|.
T Consensus       142 ~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~---~~~l~V~  189 (190)
T 2wv3_A          142 GRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASV---STVLRVR  189 (190)
T ss_dssp             SCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCEEEE---EEEEEEE
T ss_pred             CeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCccee---EEEEEEE
Confidence            555555443   79999999 79999999999999886433   2555553

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.87  E-value=5.6e-22  Score=187.86  Aligned_cols=160  Identities=15%  Similarity=0.247  Sum_probs=127.0

Q ss_pred             ceeccCCCceEEeCCCCCCCccEEEEccCCCCCccc------------CCCeEEEe----e--CccEEEEeecccCCeeE
Q psy14896        578 EIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVE------------EDKRVFVS----Y--DGALYFSALEQIDAGNY  639 (813)
Q Consensus       578 ~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~------------~~~~~~~~----~--~~~L~i~~~~~~d~G~Y  639 (813)
                      ..+.+|+.++|.|.+ .+.|.+.+.|+|++......            ...++...    .  +.+|.|.+++.+|+|.|
T Consensus         5 v~~~~G~~v~L~C~~-~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y   83 (184)
T 2ny1_B            5 VLGKKGDTVELTCTA-SQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   83 (184)
T ss_dssp             EEEETTSCEEECCBC-SSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred             EEEeCCCCEEEEEEE-cCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEE
Confidence            456789999999999 58899999999998632221            12334433    2  23499999999999999


Q ss_pred             EEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCcee
Q psy14896        640 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF  719 (813)
Q Consensus       640 ~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~  719 (813)
                      +|.|.|..|.       +.|.|...+      .+.      ...+.+|++++|.|.+.+.|.|.++|+++|..+      
T Consensus        84 ~C~~~~~~~~-------~~l~V~~~~------~~~------~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~------  138 (184)
T 2ny1_B           84 ICEVEDQKEE-------VQLLVFGLT------ANS------DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN------  138 (184)
T ss_dssp             EEEETTEEEE-------EEEEEEEEE------ESS------CSEEETTCCEEEEEECCTTCCCEEEEECTTSCE------
T ss_pred             EEEEEcCCCc-------EEEEEEEec------CCC------CceeecCCCEEEEEEcCCCCCCEEEEEeCCCcc------
Confidence            9999998752       455655311      111      145789999999999999999999999998765      


Q ss_pred             eecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCCc
Q psy14896        720 ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPN  763 (813)
Q Consensus       720 ~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~  763 (813)
                      ......|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.+.|.
T Consensus       139 ~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p~  182 (184)
T 2ny1_B          139 IQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQK  182 (184)
T ss_dssp             EEESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCC
T ss_pred             ccCceEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEecCC
Confidence            23467899999999999999999999999999999999998875

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.87  E-value=2.1e-21  Score=188.20  Aligned_cols=194  Identities=21%  Similarity=0.311  Sum_probs=145.7

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccc--cccccCCCccEEeeCCeEEEcCCccc
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVA--NLIDPLSDKRFTLSGGNLIINDPRQV  266 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~  266 (813)
                      ++.|...|..+.+.+|     +++.|.|.+.|.|.+.|.|+|++..+.....  ..+......++...+++|.|.+. +.
T Consensus         4 ~~~i~~~~~~~~v~~G-----~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~~-~~   77 (209)
T 1nbq_A            4 SVTVHSSEPEVRIPEN-----NPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSV-TR   77 (209)
T ss_dssp             CCEEECSCSBCCEETT-----CCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCC-CT
T ss_pred             eEEEEcCCCceEEEcC-----CCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeeccEEEEeeC-CH
Confidence            4566677788888777     6699999999999999999999976421110  01122344566667788988885 89


Q ss_pred             cCCeeEEEEeecCcee-eEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCC---
Q psy14896        267 EDRGSYHCKASNKFGS-IISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEED---  342 (813)
Q Consensus       267 ~d~G~Y~C~a~n~~g~-~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~---  342 (813)
                      +|+|.|+|.|.|..|. ..+..+.|.|..+|.+.....+..+.+|+.++|.|.+..+.|.+.+.|++++.++.....   
T Consensus        78 ~d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~  157 (209)
T 1nbq_A           78 EDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTR  157 (209)
T ss_dssp             TSCSEEEEEEEETTSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSS
T ss_pred             HHCcEEEEEEecCCCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccce
Confidence            9999999999998652 235678888888887776666778899999999999768999999999999987543322   


Q ss_pred             ----ccEEEc-cCccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEc
Q psy14896        343 ----KRVFVS-YDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF  389 (813)
Q Consensus       343 ----~~~~~~-~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~  389 (813)
                          .++.+. ..+.|.|.++..+|+|.|+|.|.|..|.. ..+..+.|.|.
T Consensus       158 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~s~~v~l~V~  208 (209)
T 1nbq_A          158 AFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTP-MTSNAVRMEAV  208 (209)
T ss_dssp             SCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCC-EECCCBCCEEE
T ss_pred             eeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcc-cccccEEEEEe
Confidence                122222 35689999999999999999999998864 22344566553

>1fm5_A Early activation antigen CD69; C-type lectin-like domain, natural killer cell receptor, lectin, C-type lectin, immune system; 2.27A {Homo sapiens} SCOP: d.169.1.1

Probab=99.87  E-value=4.7e-22  Score=187.94  Aligned_cols=118  Identities=16%  Similarity=0.333  Sum_probs=98.1

Q ss_pred             cccCCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCe
Q psy14896         24 ELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLW  103 (813)
Q Consensus        24 ~~~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~  103 (813)
                      .....||.||..|+++||+|+... ++|.+|+..|+.+||+||+|+|++|++||.+++.    ...+||||.+.. ++.|
T Consensus        80 ~~~~~Cp~gW~~~~~~CY~~~~~~-~tw~~A~~~C~~~g~~La~i~s~~e~~fl~~~~~----~~~~WIGl~~~~-~~~w  153 (199)
T 1fm5_A           80 SHVSSCSEDWVGYQRKCYFISTVK-RSWTSAQNACSEHGATLAVIDSEKDMNFLKRYAG----REEHWVGLKKEP-GHPW  153 (199)
T ss_dssp             C----CCTTSEEETTEEEEECSSC-BCHHHHHHHHHHTTCEECCCCSHHHHHHHHHHHC----SSCEEEEEECCT-TSCC
T ss_pred             CCCCCCCCCcEEECCEEEEEeCCc-cCHHHHHHHHhhcCCEEEecCCHHHHHHHHHhhC----CCCEEeeeEECC-CCCe
Confidence            345679999999999999999984 9999999999999999999999999999999873    357999999987 8999


Q ss_pred             EEcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        104 VNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       104 ~W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      .|.||+++.   +|. +   ..+.++|+.|..  +  .|  .+..|.....|+|+..
T Consensus       154 ~W~DGs~~~---~W~-~---~~~~~~Cv~l~~--~--~W--~d~~C~~~~~fICe~~  197 (199)
T 1fm5_A          154 KWSNGKEFN---NWF-N---VTGSDKCVFLKN--T--EV--SSMECEKNLYWICNKP  197 (199)
T ss_dssp             EETTSCBCC---CSS-C---CCSSSSEEEECS--S--CE--EEECTTSCBEEEEEEE
T ss_pred             EECCCCccc---ccc-C---CCCCCCceEEEC--C--CE--EEecCCCCEEEEcccc
Confidence            999999753   454 1   234689999854  2  34  5999999999999984

>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1

Probab=99.86  E-value=2.7e-22  Score=184.51  Aligned_cols=121  Identities=12%  Similarity=0.063  Sum_probs=106.8

Q ss_pred             CCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcC
Q psy14896         28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNED  107 (813)
Q Consensus        28 ~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~d  107 (813)
                      .||.+|..|+++||+|+.. .++|.+|+..|+.+||+||+|+|++|++||.+++.     ..+||||++...++.|.|.|
T Consensus        46 ~~~~~~~~~~~~Cy~~~~~-~~tw~~A~~~C~~~g~~La~i~s~~e~~~l~~~~~-----~~~WIGl~d~~~~g~w~W~d  119 (168)
T 1buu_A           46 HAFSMGKKSGKKFFVTNHE-RMPFSKVKALCSELRGTVAIPRNAEENKAIQEVAK-----TSAFLGITDEVTEGQFMYVT  119 (168)
T ss_dssp             HHHHTTCCTTSCEEEEEEE-EECHHHHHHHHHHTTSEECCCCSHHHHHHHHHHHC-----SCEECSEECSSSTTCCEETT
T ss_pred             ccCCCeEEECCEEEEEeCC-ccCHHHHHHHHHhCCCEEeeeCCHHHHHHHHHHhc-----CCEEeeeecCCcCCCEEeCC
Confidence            4899999999999999988 49999999999999999999999999999998872     67999999988899999999


Q ss_pred             CCCCCccccccCCCCCC-cccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        108 GTNLNELDAAFLPEPAD-NVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       108 gs~~~~~~~~~~~~p~~-~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      |++++| .+|..++|++ .+.++|+.|. ..    ..|.+..|.....|+|+..
T Consensus       120 G~~~~y-~~W~~geP~~~~~~e~Cv~~~-~~----g~W~d~~C~~~~~~ICe~~  167 (168)
T 1buu_A          120 GGRLTY-SNWKKDEPNDHGSGEDCVTIV-DN----GLWNDISCQASHTAVCEFP  167 (168)
T ss_dssp             SSBCSC-CCBSSSSCCCTTSCCCEEEEC-TT----SCEEEECTTSCEEEEEEEC
T ss_pred             CCCcCC-CCCCCCCCCCCCCCCCeEEEC-CC----CCEEccCCCCCEEEEEEec
Confidence            999987 6777779987 3468999986 22    2455999999999999974

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.86  E-value=6.3e-22  Score=185.64  Aligned_cols=165  Identities=19%  Similarity=0.227  Sum_probs=126.3

Q ss_pred             ccccccCCCceeccCCCceEEeCCCCCCCccE-EEEccCCCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEEEEeee
Q psy14896        569 GEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVN-YYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV  647 (813)
Q Consensus       569 p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~-v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~  647 (813)
                      |.+...+....+.+|+.++|.|.+ .+.|.+. +.|+|++..+.         ..+++|.|.+++.+|+|.|+|.|.|..
T Consensus         8 p~i~~~p~~~~v~~G~~v~L~C~~-~~~p~~~~~~W~~~~~~~~---------~~~~~L~i~~~~~~d~G~Y~C~~~n~~   77 (175)
T 1fnl_A            8 AVVFLEPQWYSVLEKDSVTLKCQG-AYSPEDNSTQWFHNESLIS---------SQASSYFIDAATVNDSGEYRCQTNLST   77 (175)
T ss_dssp             CEEEEESCCSEEETTCCEEEEEEC-CCBTTBCCCEEEETTEEEE---------SSCSEEEESSCCGGGCEEEEEECSSSC
T ss_pred             CEEEEcCCceeeeCCCcEEEEeeC-CCCCCCcceEEEECCEEcc---------CCceEEEEeCCCcccCEEEEEEeeCCc
Confidence            344444555678899999999999 6767665 89999986421         245689999999999999999999854


Q ss_pred             cCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCC-eEEEEeCCcccCCCceeeecceEE
Q psy14896        648 SDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVP-SYNWTRRGSPLPRNAYFENFNRIL  726 (813)
Q Consensus       648 g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p-~i~W~k~g~~l~~~~~~~~~~~~L  726 (813)
                      +     ...+.|.|..++....  .+       ...+.+|+.++|.|.+.+.|++ .|+|+|+|..+..    ......|
T Consensus        78 ~-----s~~~~l~V~~~~~~~~--~~-------~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~----~~~~~~L  139 (175)
T 1fnl_A           78 L-----SDPVQLEVHIGWLLLQ--AP-------RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY----FHHNSDF  139 (175)
T ss_dssp             C-----CCCEEEEEECSSEEEE--CS-------CSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE----EEECCCE
T ss_pred             c-----cccEEEEEeCCCceee--CC-------CceecCCCCEEEEEEcCCCCCceEEEEEECCeEccC----CCCCCEE
Confidence            3     2346777775443221  11       1457899999999999988765 9999999998743    2336789


Q ss_pred             EECCCCCCCCEEEEEEEEcCCCc-eEEEEEEEEEcC
Q psy14896        727 TIPNVKVEDQGEYICRASNDRSA-LESSVTISIQAE  761 (813)
Q Consensus       727 ~i~~v~~~d~G~Y~C~a~N~~G~-~~~~~~l~V~~~  761 (813)
                      .|.+++.+|+|.|+|.|.|..|. .+..+.|.|.+|
T Consensus       140 ~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~  175 (175)
T 1fnl_A          140 HIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQA  175 (175)
T ss_dssp             EESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECC
T ss_pred             EEcccChhhCeEEEEEEEcCCCCccCccEEEEEeCC
Confidence            99999999999999999997664 667888888764

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.86  E-value=2.2e-22  Score=201.71  Aligned_cols=201  Identities=16%  Similarity=0.161  Sum_probs=118.4

Q ss_pred             CCCCCceEEEEEEcCceeEEeecEEEEEeecccccccCCCceeccCCCceEEeCCCCCCC-----ccEEEEccCC--CCC
Q psy14896        538 QVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYP-----GVNYYWARDY--FPN  610 (813)
Q Consensus       538 ~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p-----~~~v~W~k~~--~~~  610 (813)
                      +.+|+|.|+|.|.   |..... ..+.+..++.+...+....+.+|+.++|.|.+ .+.|     .+.|.|+|++  ...
T Consensus        12 ~~~dsg~Y~C~a~---g~~~~~-~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~~~~v~W~k~~~g~~~   86 (254)
T 2c1o_A           12 RPGTSVKLSCKAS---GYSFTN-YWMNWLRELVMTQSPLTLSVTIGQPASISCKS-SQSLLYSNGKTYLNWLLQRPGQSP   86 (254)
T ss_dssp             ------------------------------CCCEEEECSEEEECTTSCEEEEEEE-SSCCBCSSSCBCEEEEEECTTSCC
T ss_pred             cCCccEEEEEcCc---hhhhhh-hhhheeeceeEEeCCceEEecCCCcEEEEeec-cCcccccCCCCceEEEEeCCCCCc
Confidence            7899999999998   443332 33333334555555666778999999999999 5666     4899999853  221


Q ss_pred             c----------ccCCCeEEEeeCc---cEEEEeecccCCeeEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCC
Q psy14896        611 F----------VEEDKRVFVSYDG---ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFP  677 (813)
Q Consensus       611 ~----------~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~  677 (813)
                      .          .....++.+..++   +|.|.+++.+|+|.|+|.|.|..+.....  ...|.|...+....+.+     
T Consensus        87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~--~~~l~V~~~~~~P~v~~-----  159 (254)
T 2c1o_A           87 KRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGA--GTKLELKRADAAPTVSI-----  159 (254)
T ss_dssp             EEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBC--CEEEEECCCCBCCEEEE-----
T ss_pred             eEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecC--CEEEEECCCCCCCeeEe-----
Confidence            0          1123566655443   69999999999999999999876532111  23566654221111111     


Q ss_pred             CCCCcCCCCCCeEEEEEEecCC-CC-CeEEEEeCCcccCCC-ce-ee---------ecceEEEECCCCCCCCEEEEEEEE
Q psy14896        678 KTFPEAPKAGDKVRLECVAFGY-PV-PSYNWTRRGSPLPRN-AY-FE---------NFNRILTIPNVKVEDQGEYICRAS  744 (813)
Q Consensus       678 ~~~~~~~~~G~~v~l~C~~~g~-P~-p~i~W~k~g~~l~~~-~~-~~---------~~~~~L~i~~v~~~d~G~Y~C~a~  744 (813)
                      ......+..|+.++|.|.+.|. |+ +.|+|+|||.++..+ .. ..         ...+.|.|.++..+|+|.|+|.|.
T Consensus       160 ~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~  239 (254)
T 2c1o_A          160 FPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEAT  239 (254)
T ss_dssp             ECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEE
T ss_pred             ecCChhhccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEE
Confidence            0001223358899999999984 44 469999999988766 11 10         114579999999999999999999


Q ss_pred             cCCCce
Q psy14896        745 NDRSAL  750 (813)
Q Consensus       745 N~~G~~  750 (813)
                      |.....
T Consensus       240 n~~~~~  245 (254)
T 2c1o_A          240 HKTSTS  245 (254)
T ss_dssp             CTTCSS
T ss_pred             cCCCCC
Confidence            987654

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.86  E-value=4.6e-22  Score=188.91  Aligned_cols=179  Identities=14%  Similarity=0.118  Sum_probs=123.0

Q ss_pred             cccccCCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEEEEeeecC
Q psy14896        570 EFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSD  649 (813)
Q Consensus       570 ~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  649 (813)
                      .+...+.. .+.+|++++|.|.+ .+ +.+.+.|+|+|.++............+++|.|.+++.+|+|.|+|.|.|..|.
T Consensus         6 ~i~~~p~~-~v~~G~~v~L~C~~-~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~   82 (188)
T 1oll_A            6 FIWAEPHF-MVPKEKQVTICCQG-NY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELW   82 (188)
T ss_dssp             EEEEESCS-EEETTCCEEEEEEC-CT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             EEEeecCC-cCCCCCCEEEEEec-CC-CCCEEEEEECCCcccccccccCCCcceeEEEeCcCCcccCeEEEEEecCCCCC
Confidence            33333333 67889999999998 44 45789999998753211111111123457999999999999999999986543


Q ss_pred             ccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEEC
Q psy14896        650 TGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIP  729 (813)
Q Consensus       650 ~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~  729 (813)
                      .. .+..+.|.|........+..+     . ...+.+|++++|.|.+.+. .+.+.|+|+|..+............|.|.
T Consensus        83 ~~-~s~~~~l~V~~~~~~p~i~~~-----p-~~~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~L~I~  154 (188)
T 1oll_A           83 SE-PSNLLDLVVTEMYDTPTLSVH-----P-GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHVQRGYGKVQAEFPLG  154 (188)
T ss_dssp             CC-CCCCEEEEEESCSCCCEEEEE-----S-CSEEETTCEEEEEEECSSS-CSEEEEEEESSSCEEEEEECSSEEEEEEE
T ss_pred             CC-CCCceEEEecccCCCCeEEEC-----C-CCccccCCEEEEEEEcCCC-CCEEEEEECCccccccccCCCceeEEEEC
Confidence            22 233466777642211111111     1 1457899999999999774 57999999998876432333446789999


Q ss_pred             CCCCCCCEEEEEEEEcCCC---ceEEEEEEEEE
Q psy14896        730 NVKVEDQGEYICRASNDRS---ALESSVTISIQ  759 (813)
Q Consensus       730 ~v~~~d~G~Y~C~a~N~~G---~~~~~~~l~V~  759 (813)
                      +++.+|+|.|+|.|.|...   ..+..+.|.|.
T Consensus       155 ~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~  187 (188)
T 1oll_A          155 PVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT  187 (188)
T ss_dssp             ECCGGGCEEEEEECEEETTEECCCCCCEEEEEE
T ss_pred             CCCcCCCcEEEEEEEcCCCcCCCCCCcEEEEec
Confidence            9999999999999998752   34556777775

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.86  E-value=3.7e-21  Score=180.42  Aligned_cols=167  Identities=14%  Similarity=0.182  Sum_probs=128.8

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCCe-EEEeecccccccccccccccCCCccEEeeCCeEEEcCCcccc
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPS-YEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE  267 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~-v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~  267 (813)
                      +|.|...|....+.+|     ++++|.|.+.+.|.+. +.|||+|..+.                ..+++|.|.+. +.+
T Consensus         7 ~p~i~~~p~~~~v~~G-----~~v~L~C~~~~~p~~~~~~W~~~~~~~~----------------~~~~~L~i~~~-~~~   64 (175)
T 1fnl_A            7 KAVVFLEPQWYSVLEK-----DSVTLKCQGAYSPEDNSTQWFHNESLIS----------------SQASSYFIDAA-TVN   64 (175)
T ss_dssp             CCEEEEESCCSEEETT-----CCEEEEEECCCBTTBCCCEEEETTEEEE----------------SSCSEEEESSC-CGG
T ss_pred             CCEEEEcCCceeeeCC-----CcEEEEeeCCCCCCCcceEEEECCEEcc----------------CCceEEEEeCC-Ccc
Confidence            5889999988788777     6699999999988776 89999997652                12567888885 899


Q ss_pred             CCeeEEEEeecCceeeEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCccEEE
Q psy14896        268 DRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFV  347 (813)
Q Consensus       268 d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~  347 (813)
                      |+|.|+|.|.|..+   +..+.|.|..++ +.+......+.+|+.++|.|.+..+.|.+.+.|+|+|.++..       .
T Consensus        65 d~G~Y~C~~~n~~~---s~~~~l~V~~~~-~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~-------~  133 (175)
T 1fnl_A           65 DSGEYRCQTNLSTL---SDPVQLEVHIGW-LLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY-------F  133 (175)
T ss_dssp             GCEEEEEECSSSCC---CCCEEEEEECSS-EEEECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE-------E
T ss_pred             cCEEEEEEeeCCcc---cccEEEEEeCCC-ceeeCCCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccC-------C
Confidence            99999999998655   556777776433 333344567789999999999755555679999999987421       2


Q ss_pred             ccCccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEcc
Q psy14896        348 SYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFP  390 (813)
Q Consensus       348 ~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~  390 (813)
                      ..++.|.|.+++.+|+|.|+|.|.|..+.  ..+..+.|.|..
T Consensus       134 ~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~--~~s~~~~l~V~~  174 (175)
T 1fnl_A          134 HHNSDFHIPKATLKDSGSYFCRGLVGSKN--VSSETVNITITQ  174 (175)
T ss_dssp             EECCCEEESSCCGGGCEEEEEEEEETTEE--EECCCEEEEEEC
T ss_pred             CCCCEEEEcccChhhCeEEEEEEEcCCCC--ccCccEEEEEeC
Confidence            24578999999999999999999997653  234457777753

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.86  E-value=2.8e-21  Score=185.65  Aligned_cols=170  Identities=14%  Similarity=0.172  Sum_probs=130.6

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCCe-EEEeecccccccccccccccCCCccEEeeCCeEEEcCCcccc
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPS-YEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE  267 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~-v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~  267 (813)
                      +|.|...|.+..+.+|     ++++|.|.+.+.|.+. |.|||+|..+..          .      .++|.|.+. +.+
T Consensus         7 ~p~i~~~p~~~~v~~G-----~~v~L~C~~~~~p~~~~v~W~k~g~~l~~----------~------~~~L~i~~v-~~~   64 (204)
T 3sgj_C            7 KAVVFLEPQWYRVLEK-----DSVTLKCQGAYSPEDQSTQWFHNESLISS----------Q------ASSYFIDAA-TVD   64 (204)
T ss_dssp             BCEEEEESCCSEEETT-----CCEEEEEECCSSSSCCCEEEEETTEEESC----------C------SSEEEESSC-CGG
T ss_pred             CCeEEEcCCCeEEECC-----CCEEEEEcCCCCCCCcEEEEEECCEEccc----------C------ccEEEEecc-ccc
Confidence            4788888888777777     6799999999988775 999999986521          1      267888885 899


Q ss_pred             CCeeEEEEeecCceeeEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCccEEE
Q psy14896        268 DRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFV  347 (813)
Q Consensus       268 d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~  347 (813)
                      |+|.|+|.|.|...   +..+.|.|...+.+.. .....+.+|+.++|.|.+..+.|.+++.|+|||..+..       .
T Consensus        65 D~G~Y~C~a~n~~~---s~~~~l~V~~~p~~~~-~~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~-------~  133 (204)
T 3sgj_C           65 DSGEYRCQTQLSTL---SDPVQLEVHIGWLLLQ-APRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKY-------F  133 (204)
T ss_dssp             GCEEEEEEETTSBC---CCCEEEEEECSSEEEE-CSCSEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEE-------E
T ss_pred             CCEEEEEEeCCCcc---cccEEEEEecCceEec-CCceeEeCCCcEEEEEEecCCCCCceEEEEECCcEeec-------c
Confidence            99999999998543   5678888876654433 33467788999999999766667899999999986421       2


Q ss_pred             ccCccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCc
Q psy14896        348 SYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSN  393 (813)
Q Consensus       348 ~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~  393 (813)
                      ..++.|.|.+++.+|+|.|+|.|.|..+  ...+..+.|.|..++.
T Consensus       134 ~~~~~L~i~~v~~~D~G~Y~C~a~n~~~--~~~s~~~~l~V~~~~~  177 (204)
T 3sgj_C          134 HHNSDFYIPKATLKDSGSYFCRGLVGSK--NVSSETVQITITQGLA  177 (204)
T ss_dssp             EECCCEEESSCCGGGCEEEEEEEEETTE--EEECCCEEEEEEC---
T ss_pred             cCCceEEECcCCcccCEEEEEEEEeCCC--ceecCcEEEEEeCcCC
Confidence            3466899999999999999999999543  2345568888876543

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.86  E-value=1.3e-21  Score=183.69  Aligned_cols=169  Identities=18%  Similarity=0.212  Sum_probs=129.9

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCC-eEEEeecccccccccccccccCCCccEEeeCCeEEEcCCcccc
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE  267 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p-~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~  267 (813)
                      +|.|...|....+.+|     ++++|.|.+.+.|.+ .+.|||+|..+.          .      .+++|.|.+. +.+
T Consensus         4 ~P~i~~~p~~~~v~~G-----~~v~L~C~~~~~~~~~~i~W~~~~~~~~----------~------~~~~L~i~~v-~~~   61 (176)
T 1f2q_A            4 KPKVSLNPPWNRIFKG-----ENVTLTCNGNNFFEVSSTKWFHNGSLSE----------E------TNSSLNIVNA-KFE   61 (176)
T ss_dssp             CCCCEEESSCSEEETT-----CCEEEECCTTCC----CCEEEETTEECS----------C------CSSEEEECSC-CGG
T ss_pred             CCEEEcCCCCcceecC-----CcEEEEEeCCCCCCcceEEEEECCeECC----------C------CceEEEEecc-cee
Confidence            6888889988888777     669999999998875 799999997652          1      2567888885 899


Q ss_pred             CCeeEEEEeecCceeeEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCccEEE
Q psy14896        268 DRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFV  347 (813)
Q Consensus       268 d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~  347 (813)
                      |+|.|+|.|.|..+   +..+.|.|.. +.+.+......+.+|+.++|.|.+..+.|.+.+.|+|||.++...       
T Consensus        62 d~G~Y~C~~~~~~~---s~~~~l~V~~-~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~-------  130 (176)
T 1f2q_A           62 DSGEYKCQHQQVNE---SEPVYLEVFS-DWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW-------  130 (176)
T ss_dssp             GCEEEEEECTTSSC---CCCEEEEEEC-SSEEEEESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSC-------
T ss_pred             cCEEEEEEcCCccc---cccEEEEEeC-cceeecCCcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeee-------
Confidence            99999999998765   4567777763 333344455678899999999997667888999999999875221       


Q ss_pred             ccCccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCC
Q psy14896        348 SYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHS  392 (813)
Q Consensus       348 ~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~  392 (813)
                      ..++.|.|.++..+|+|.|+|.|.|..+.  ..+..+.|.|..+|
T Consensus       131 ~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~--~~s~~~~l~V~~~p  173 (176)
T 1f2q_A          131 YENHNISITNATVEDSGTYYCTGKVWQLD--YESEPLNITVIKAP  173 (176)
T ss_dssp             CCSSEEEESSCCGGGCEEEEEEEEETTEE--EECCCEEEEEECSC
T ss_pred             cCCCeEEECCCCcccCEEEEEEEEeCCcc--eEecCEEEEEecCC
Confidence            23568999999999999999999997442  33455888887665

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.86  E-value=6.9e-22  Score=197.77  Aligned_cols=178  Identities=16%  Similarity=0.169  Sum_probs=128.2

Q ss_pred             CCceeccCCCceEEeCCCCC---CCccEEEEccCCCCCc----------------------------ccCCCeEEEee--
Q psy14896        576 APEIGNQNWGKAMFCDPPTN---YPGVNYYWARDYFPNF----------------------------VEEDKRVFVSY--  622 (813)
Q Consensus       576 ~~~~~~~g~~~~l~C~~~~~---~p~~~v~W~k~~~~~~----------------------------~~~~~~~~~~~--  622 (813)
                      .+..+.+|+.++|.|.+ .+   .|.+.|.|+|++.+..                            .....|..+..  
T Consensus        10 ~~v~v~~G~~v~L~C~~-~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   88 (250)
T 2fbo_J           10 TEVEVHAGGTVELPCSY-QLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLA   88 (250)
T ss_dssp             SEEEECTTSCEEECCEE-EECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSCTT
T ss_pred             CceEEecCCeEEEEEEe-EcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEeccCC
Confidence            35567889999999998 44   7889999999875420                            11223444443  


Q ss_pred             CccEEEEeecccCCeeEEEEEEeeecCccc--cCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCC
Q psy14896        623 DGALYFSALEQIDAGNYSCNVQSKVSDTGR--NGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYP  700 (813)
Q Consensus       623 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~--~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P  700 (813)
                      +.+|.|.+++.+|+|.|+|.|.|..+....  ....+.|.|..++....+.+    .......+.+|++++|.|.+.|.|
T Consensus        89 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~----~~~~~~~v~~g~~v~L~C~~~g~p  164 (250)
T 2fbo_J           89 APTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHV----STAEVVQVDEGNDITMTCPCTDCA  164 (250)
T ss_dssp             SCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEE----CCCSEEECCTTCCEEECCCEESCT
T ss_pred             cceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEE----ecCceEEecCCCcEEEEEEecCCC
Confidence            357999999999999999999998764321  12357788887632222211    122235677899999999999999


Q ss_pred             CCeEEEEeCCcccCCCc------------------------ee-eecceEEEECCCCCCCCEEEEEEEEcCC---CceEE
Q psy14896        701 VPSYNWTRRGSPLPRNA------------------------YF-ENFNRILTIPNVKVEDQGEYICRASNDR---SALES  752 (813)
Q Consensus       701 ~p~i~W~k~g~~l~~~~------------------------~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~---G~~~~  752 (813)
                      .|.|+|+|++..+....                        +. ......|.|.+++.+|+|.|+|.|.|..   |....
T Consensus       165 ~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~~  244 (250)
T 2fbo_J          165 NANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRS  244 (250)
T ss_dssp             TCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGGGEEEE
T ss_pred             CCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccccCccce
Confidence            99999999998875421                        01 1134689999999999999999999955   45666


Q ss_pred             EEEEEE
Q psy14896        753 SVTISI  758 (813)
Q Consensus       753 ~~~l~V  758 (813)
                      ++.|.|
T Consensus       245 ~~~l~V  250 (250)
T 2fbo_J          245 STILKV  250 (250)
T ss_dssp             EEEEEC
T ss_pred             eEEEeC
Confidence            666654

>3c8j_A Natural killer cell receptor LY49C; MHC, virus, immune system; 2.60A {Mus musculus} SCOP: d.169.1.1 PDB: 3c8k_D 1p4l_D 1ja3_A 1p1z_D

Probab=99.86  E-value=2.5e-22  Score=190.04  Aligned_cols=122  Identities=20%  Similarity=0.306  Sum_probs=106.3

Q ss_pred             ccCCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeE
Q psy14896         25 LELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWV  104 (813)
Q Consensus        25 ~~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~  104 (813)
                      .+..||.||..|+++||+|+.+ .++|.+|+..|+.+||+||+|+|++|++||..++.    ...+||||.+...++.|.
T Consensus        76 ~~~~Cp~gW~~~~~~CY~~~~~-~~tw~~A~~~C~~~g~~LasI~s~~E~~fl~~~~~----~~~~WIGl~~~~~~~~w~  150 (203)
T 3c8j_A           76 DTGRGVKYWFCYSTKCYYFIMN-KTTWSGCKANCQHYGVPILKIEDEDELKFLQRHVI----PGNYWIGLSYDKKKKEWA  150 (203)
T ss_dssp             -CCCCCEEEEEEETEEEEEEEE-EECHHHHHHHHHHTTCCBCCCCSHHHHHHHHHHSC----SSCEEEEEEEETTTTEEE
T ss_pred             CCCCCCCCcEEeCCEEEEEECC-CCCHHHHHHHHHhCCCEeeeeCCHHHHHHHHHhcC----CCCEEEeeeecCCCCceE
Confidence            4567999999999999999998 49999999999999999999999999999999873    457999999988899999


Q ss_pred             EcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        105 NEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       105 W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      |+||+++.+  +|..++|+ .+.++|+.|...    .  |.+..|.....|+|++.
T Consensus       151 W~DGs~~~~--~w~~~~pn-~~~~~Cv~l~~~----~--W~d~~C~~~~~fICe~~  197 (203)
T 3c8j_A          151 WIDNGPSKL--DMKIKKMN-FKSRGCVFLSKA----R--IEDIDCNIPYYCICGKK  197 (203)
T ss_dssp             ETTSCCCTT--HHHHHTTC-CCSSSEEEECSS----C--EEEECTTSCEEEEEEEE
T ss_pred             ECCCCCCCC--CCCCCCCC-CCCCCcEEEECC----c--EECcCCCCCEEEEEeEC
Confidence            999999985  56666775 457899998532    3  55999999999999995

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.86  E-value=1.3e-21  Score=188.23  Aligned_cols=167  Identities=14%  Similarity=0.128  Sum_probs=114.1

Q ss_pred             CceeeCCCceeecCCCccccccEEEEeeec-cCCCCeEEEeecccccccccccccccCCCccEEeeC--C--eEEEcCCc
Q psy14896        190 PYFIKQPTDVVFDLSKRSILNDITLSCYAG-GYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSG--G--NLIINDPR  264 (813)
Q Consensus       190 P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~-g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~--~--~l~i~~~~  264 (813)
                      |.|.... +..+.+|     +.+.|.|++. +.|.|.|+|||||++|..        ....++....  +  +|.|.+. 
T Consensus         4 p~~~~~~-~~~v~eg-----~~v~l~c~~~~~~P~p~i~W~kng~~l~~--------~~~~~~~~~~~~g~~~L~I~~v-   68 (207)
T 3rbs_A            4 PFTKSEL-AVEILEK-----GQVRFWMQAEKLSGNAKVNYIFNEKEIFE--------GPKYKMHIDRNTGIIEMFMEKL-   68 (207)
T ss_dssp             --CCEEE-EEEECGG-----GCEEEEEECSCCCSCCEEEEEETTEEECS--------SSSCEEEECTTTCEEEEEESCC-
T ss_pred             CeeecCC-ceEEEeC-----CeEEEEEEEecCCCCCEEEEEECCEECcc--------CCCEEEEEeCCCCEEEEEECCC-
Confidence            5666543 5666666     6799999996 579999999999987732        1222222222  3  4777775 


Q ss_pred             cccCCeeEEEEeecCceeeEeeeeEEeee---------------------eecccccCCCCceeecCCCeEEEecCCCCC
Q psy14896        265 QVEDRGSYHCKASNKFGSIISESVQLAFG---------------------FIGEFNLKRAPEIGNQNWGKAMFCDPPTNY  323 (813)
Q Consensus       265 ~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~---------------------~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~  323 (813)
                      +.+|+|.|+|.|.|  |.+ +....+.+.                     .+|.+.... ...+.+|+.+.|.|.+ .|.
T Consensus        69 ~~~D~G~Y~C~a~N--g~a-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~v~~g~~v~l~C~v-~g~  143 (207)
T 3rbs_A           69 QDEDEGTYTFQLQD--GKA-TNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKV-ANI  143 (207)
T ss_dssp             CGGGCEEEEEEEEE--TTE-EEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-EEEEETTTEEEEEEEE-ESC
T ss_pred             ChhhCEEEEEEEEC--CCe-EEEEEEEEEccchhhhcccccccccccccCCCCceEecC-CcEEcCCCcEEEEEEE-eCC
Confidence            89999999999999  433 222222210                     012222222 3567789999999996 566


Q ss_pred             -CcceEEEeeccccccccCCccEEEcc-CccEEEeeeeecCCeeeEEEEeeeccccC
Q psy14896        324 -PGVNYYWARDYFPNFVEEDKRVFVSY-DGALYFSALEQIDAGNYSCNVQSKVSDTG  378 (813)
Q Consensus       324 -p~~~v~W~k~~~~~~~~~~~~~~~~~-~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~  378 (813)
                       |.|+++|+|||+++..  +.++.... ..+|.|.++..+|+|.|+|.|.|..|...
T Consensus       144 ~P~p~i~W~k~g~~l~~--~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~  198 (207)
T 3rbs_A          144 KKETHIVWYKDEREISV--DEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDK  198 (207)
T ss_dssp             CTTCEEEEEETTEEECC--CCCCCCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEE
T ss_pred             CCCCEEEEEECCEECCC--CCceEcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEE
Confidence             9999999999998533  33432222 23699999999999999999999998643

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.86  E-value=6.8e-21  Score=185.75  Aligned_cols=172  Identities=21%  Similarity=0.308  Sum_probs=136.8

Q ss_pred             CCCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCcccc
Q psy14896        188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE  267 (813)
Q Consensus       188 ~~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~  267 (813)
                      ..+.|+..|.++.+.+|     +++.|.|.+.|.|.+.|.|||++..+..          .     .+++|.|.+. +.+
T Consensus        17 ~~~~i~~~p~~~~v~~G-----~~v~L~C~~~~~p~~~v~W~~~~~~~~~----------~-----~~~~L~i~~v-~~~   75 (218)
T 3k0w_A           17 RGSKITVNPESKAVLAG-----QFVKLCCRATGHPFVQYQWFKMNKEIPN----------G-----NTSELIFNAV-HVK   75 (218)
T ss_dssp             --CCEEECCCCEEEETT-----SBEEEECEETTTTSSEEEEEETTEECTT----------C-----CSSEEEETTC-CGG
T ss_pred             CCCEEEECCCCeEEeCC-----CcEEEEeeecCCCCCEEEEEECCEECCC----------C-----CCCEEEEccC-Chh
Confidence            35789999999999888     6699999999999999999999976521          1     2457888885 899


Q ss_pred             CCeeEEEEeecCceeeEeeeeEEeeeeec---------------ccccCCCCceeecCCCeEEEecCCCCCCcceEEEee
Q psy14896        268 DRGSYHCKASNKFGSIISESVQLAFGFIG---------------EFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWAR  332 (813)
Q Consensus       268 d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~---------------~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k  332 (813)
                      |+|.|+|.|.|..|...+..+.|.|...+               .+...+....+.+|+.++|.|.+ .+.|.+.+.|++
T Consensus        76 d~G~Y~C~~~n~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~-~g~p~~~v~W~~  154 (218)
T 3k0w_A           76 DAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVA-VGSPIPHYQWFK  154 (218)
T ss_dssp             GCEEEEEEEECTTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEE-EBSSCCEEEEEE
T ss_pred             hCeEeEEEEEcCCCCceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEe-cccCCCeEEEEE
Confidence            99999999999988776777888887653               33344556678889999999996 788999999999


Q ss_pred             ccccccccCCccEEEccCccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccC
Q psy14896        333 DYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPH  391 (813)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~  391 (813)
                      ++..+...        ..+.|.|.++..+|+|.|+|.|.|..|..  .+..+.|.|...
T Consensus       155 ~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~--~s~~~~l~V~~~  203 (218)
T 3k0w_A          155 NELPLTHE--------TKKLYMVPYVDLEHQGTYWCHVYNDRDSQ--DSKKVEIIIDEL  203 (218)
T ss_dssp             TTEECTTC--------CSSEEEESSCCGGGCEEEEEEEECSSCEE--ECCCEEEEECC-
T ss_pred             CCEECCCC--------CCCEEEEeecChhcCEEEEEEEEcCCCCc--eeeeEEEEEeCC
Confidence            99875321        24579999999999999999999987743  344577887653

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.85  E-value=1e-21  Score=185.92  Aligned_cols=151  Identities=15%  Similarity=0.222  Sum_probs=107.4

Q ss_pred             eccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCccEEEEe-ecccCCeeEEEEEEeeecCccccCceee
Q psy14896        580 GNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSA-LEQIDAGNYSCNVQSKVSDTGRNGPFFP  658 (813)
Q Consensus       580 ~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~-~~~~d~G~Y~C~a~n~~g~~~~~~~~~~  658 (813)
                      ...|+.++|.|.+ .+ |. .|+|+|+|.++.  ..      .+++|.|.+ ++.+|+|.|+|.|.|..|....   .+.
T Consensus        11 ~~~G~~v~L~C~~-~~-~~-~i~W~k~g~~l~--~~------~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~---~~~   76 (186)
T 1jbj_A           11 SISGTSVELTCPL-DS-DE-NLKWEKNGQELP--QK------HDKHLVLQDFSEVEDSGYYVCYTPASNKNTYL---YLK   76 (186)
T ss_dssp             EEETTEEEEECSS-CC-CT-TCEEEETTEEEC--SC------CCSEEEEESCCTTTSCEEEEEECSSCCCCCCE---EEC
T ss_pred             EeCCcEEEEEEeC-CC-CC-ceEEEECCEECC--CC------CCCEEEECCCCccccCEEEEEEEEeCCCcEEE---EEE
Confidence            4569999999999 45 43 499999997532  21      356899999 9999999999999999886321   222


Q ss_pred             EEEcc--CCCccc-------cccC-----CCCCCCC---CcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeee
Q psy14896        659 LKVFP--HSNFQQ-------LKFP-----NNFPKTF---PEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFEN  721 (813)
Q Consensus       659 l~v~~--~p~~~~-------~~~p-----~~~~~~~---~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~  721 (813)
                      +.|..  ++....       ...+     .......   ...+.+|++++|.|.+   |.|.|+|+|||..|.....   
T Consensus        77 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~---  150 (186)
T 1jbj_A           77 ARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNA---  150 (186)
T ss_dssp             CCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECCCSSC---
T ss_pred             EEEecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECcccCC---
Confidence            32222  221100       0000     0000000   0235599999999988   8899999999999875432   


Q ss_pred             cceEEEECCCCCCCCEEEEEEEEcCCCce
Q psy14896        722 FNRILTIPNVKVEDQGEYICRASNDRSAL  750 (813)
Q Consensus       722 ~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~  750 (813)
                      ..++|.|.++..+|+|.|+|.|.|..|+.
T Consensus       151 ~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          151 TKNTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence            46789999999999999999999998876

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.85  E-value=3.6e-21  Score=194.72  Aligned_cols=194  Identities=18%  Similarity=0.214  Sum_probs=124.2

Q ss_pred             ccCCCceeccCCCceEEeCCC--CCCCccEEEEccCCCCCccc----------------CCCeEEEee-----CccEEEE
Q psy14896        573 LKRAPEIGNQNWGKAMFCDPP--TNYPGVNYYWARDYFPNFVE----------------EDKRVFVSY-----DGALYFS  629 (813)
Q Consensus       573 ~~~~~~~~~~g~~~~l~C~~~--~~~p~~~v~W~k~~~~~~~~----------------~~~~~~~~~-----~~~L~i~  629 (813)
                      .......+.+|+.++|.|.+.  .+.|.+.|.|+|++......                -..++.+..     +++|.|.
T Consensus        10 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   89 (268)
T 3mj6_A           10 VSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQ   89 (268)
T ss_dssp             --CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCEEEC
T ss_pred             cCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEEEEC
Confidence            344456778999999999983  16788999999976432111                013444422     3679999


Q ss_pred             eecccCCeeEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEe---cCCCCCeEEE
Q psy14896        630 ALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVA---FGYPVPSYNW  706 (813)
Q Consensus       630 ~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~---~g~P~p~i~W  706 (813)
                      +++.+|+|.|+|.|.|..+... ....+.|.|...             .+....+.+|++++|.|.+   .+.|.|.|+|
T Consensus        90 ~v~~~D~G~Y~C~~~~~~~~~~-~~~~~~l~V~~~-------------~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W  155 (268)
T 3mj6_A           90 DVQKADEGIYTCEIRLKNESMV-MKKPVELWVLPE-------------EPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNW  155 (268)
T ss_dssp             SCCGGGCEEEEEEEEETTCCCE-EEEEEEEEEECC-------------CCSEEEEETTCCEEECCBCEESSSSCCCEEEE
T ss_pred             CCCHhHCEEEEEEEEecCCcce-EEEEEEEEEecc-------------CCCccccccCCcEEEEEEecCCCCCCccceEE
Confidence            9999999999999999754421 222345555411             1113567899999999999   6889999999


Q ss_pred             EeCCcc-cCCCc-----------------ee----------eecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896        707 TRRGSP-LPRNA-----------------YF----------ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI  758 (813)
Q Consensus       707 ~k~g~~-l~~~~-----------------~~----------~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  758 (813)
                      +|++.. +....                 ++          .....+|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V  235 (268)
T 3mj6_A          156 MFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHV  235 (268)
T ss_dssp             EEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEE
Confidence            995332 21110                 01          133568999999999999999999999999999999999


Q ss_pred             -EcCCcccccCCceeecCCCeEE
Q psy14896        759 -QAEPNFTIPLTDKHMDNQADLT  780 (813)
Q Consensus       759 -~~~P~~~~~~~~~~~~~g~~~~  780 (813)
                       ..+|.+...+....+.+|+.+.
T Consensus       236 ~~~~p~~~~~p~~~~~~~~q~~~  258 (268)
T 3mj6_A          236 VQDEFQRTISPTPPTDKGQQGIL  258 (268)
T ss_dssp             ECC--------------------
T ss_pred             EcCCCeeeeCCCCCCCCcceecc
Confidence             5667777778877777776543

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.85  E-value=1.6e-20  Score=182.25  Aligned_cols=184  Identities=12%  Similarity=0.105  Sum_probs=128.7

Q ss_pred             CCCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCC--eEEEcCCcc
Q psy14896        188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGG--NLIINDPRQ  265 (813)
Q Consensus       188 ~~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~  265 (813)
                      .+|.|...|. ..+.+|     ++|+|.|.+.+ |.+.|.|||+|..+....       ........++  +|.|.+. +
T Consensus         8 ~~P~i~~~p~-~~v~~G-----~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~-------~~~~~~~~~~~~~L~I~~v-~   72 (218)
T 1uct_A            8 PMPFISAKSS-PVIPLD-----GSVKIQCQAIR-EAYLTQLMIIKNSTYREI-------GRRLKFWNETDPEFVIDHM-D   72 (218)
T ss_dssp             CCCCEEESSC-SEEETT-----CCEEEEECCCT-TCSEEEEEEEETTEEEEC-------SEECC----CCCEEEECSC-C
T ss_pred             CCCEEEecCC-CccCCC-----CCEEEEEEcCC-CCCEEEEEECCCcccccc-------cccCCCCcceeeEEEEccc-c
Confidence            3688998887 456666     77999999988 788999999998653110       0000011234  7888875 8


Q ss_pred             ccCCeeEEEEeecCcee-eEeeeeEEeeeee---cccccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccC
Q psy14896        266 VEDRGSYHCKASNKFGS-IISESVQLAFGFI---GEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEE  341 (813)
Q Consensus       266 ~~d~G~Y~C~a~n~~g~-~~s~~~~l~v~~~---~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~  341 (813)
                      .+|+|.|+|.|.|..|. ..+..+.|.|...   |.+...+ ...+.+|+.++|.|.. .+.|.+.+.|+|+|..+..  
T Consensus        73 ~~D~G~Y~C~a~n~~~~~~~s~~~~l~V~~~~~~P~i~~~p-~~~v~~G~~v~L~C~~-~~~~~~~~~W~k~g~~~~~--  148 (218)
T 1uct_A           73 ANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADR-GLVLMPGENISLTCSS-AHIPFDRFSLAKEGELSLP--  148 (218)
T ss_dssp             GGGCEEEEEEEEETTTEEEECCCEEEEEECSSCCCEEEESS-CSEECTTCCCEEEEEC-SSSCCSEEEEEETTCSSCC--
T ss_pred             cccCEEEEEEEEcCCCceeecCCEEEEEcCcccCCEEEeCC-CCccCCCCCEEEEEeC-CCCCCCEEEEEECCCcccc--
Confidence            99999999999997653 3356678887652   2232223 4577899999999964 4567789999999987532  


Q ss_pred             CccEEEccCccEEEeeeeecCCeeeEEEEeeeccc--cCCCCCceeeEEccC
Q psy14896        342 DKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSD--TGRNGPFFPLKVFPH  391 (813)
Q Consensus       342 ~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~--~~~~s~~~~l~v~~~  391 (813)
                       .+.....++.|.|.+++.+|+|.|+|.|.|....  ....+..+.|.|...
T Consensus       149 -~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~  199 (218)
T 1uct_A          149 -QHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTDS  199 (218)
T ss_dssp             -SEEECSSSEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC--
T ss_pred             -cccCCCccCEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEecC
Confidence             2223344668999999999999999999986421  234456677777643

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.85  E-value=4.7e-21  Score=190.19  Aligned_cols=211  Identities=13%  Similarity=0.069  Sum_probs=122.1

Q ss_pred             ceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCC-Ce-EEEeeCccEEEEeecccCCeeEEEEEEeeecC--cccc
Q psy14896        578 EIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEED-KR-VFVSYDGALYFSALEQIDAGNYSCNVQSKVSD--TGRN  653 (813)
Q Consensus       578 ~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~-~~-~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~--~~~~  653 (813)
                      ..+.+|++++|.|.+ .+ +.+.+.|+|+|..+..... .+ .....+++|.|.+++.+|+|.|+|.|.|..+.  ....
T Consensus        16 ~~V~~G~~VtL~C~~-~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s~~   93 (257)
T 1b6u_A           16 PLVKSEETVILQCWS-DV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAP   93 (257)
T ss_dssp             SEEESSCCEEEEEEE-SS-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEECSSCTTSCCCC
T ss_pred             CEecCCCCEEEEEec-CC-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEeccCCCcccccc
Confidence            567889999999998 33 5678999999975321100 00 00123457999999999999999999875421  1222


Q ss_pred             CceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCcee---e--ecceEEEE
Q psy14896        654 GPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF---E--NFNRILTI  728 (813)
Q Consensus       654 ~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~---~--~~~~~L~i  728 (813)
                      +..+.|.|...+....+...+      ...+.+|++++|.|.+.+.| +.+.|+|+|..+......   .  .....|.|
T Consensus        94 S~~~~L~V~~~~~~P~l~~~p------~~~V~~G~~vtL~C~~~~~~-~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I  166 (257)
T 1b6u_A           94 SDPLDIVITGLYEKPSLSAQP------GPTVLAGESVTLSCSSRSSY-DMYHLSREGEAHERRFSAGPKVNGTFQADFPL  166 (257)
T ss_dssp             CCCEEEEEECSSCCCEEECSS------CTTCBTTCEEEEEEECSSCC-SEEEEEETTSSCEECCBCBCCSSSCCBEEEEE
T ss_pred             CCCEEEecccCCCCcceEccC------CCccCCCCEEEEEEeCCCCC-cEEEEEECCcccCcccccccccCCceeEEEEe
Confidence            345677777543222222111      13678999999999998865 699999999887543211   1  12578999


Q ss_pred             CCCCCCCCEEEEEEEEcCCC-----ceEEEEEEEEEcCCcccccC-CceeecCCCeEEEEEEEcccCCceEEEEECCE
Q psy14896        729 PNVKVEDQGEYICRASNDRS-----ALESSVTISIQAEPNFTIPL-TDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE  800 (813)
Q Consensus       729 ~~v~~~d~G~Y~C~a~N~~G-----~~~~~~~l~V~~~P~~~~~~-~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~g~  800 (813)
                      .+++  |+|.|+|.|.|..+     ..+..+.|.|.++|.+..+. .......|..+.|.|. .|.+.+.+.|..-+.
T Consensus       167 ~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~~~~p~~~~~~~~~g~~~~l~~~-~~~~~~~~~~~~~~~  241 (257)
T 1b6u_A          167 GPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPSSETGNPRHLHAA-AEQKLISEEDLNLDL  241 (257)
T ss_dssp             EECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC---------------------------------------
T ss_pred             cccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCCCCCCCCcccCccCCCeEEEEEE-EcchHHHHHHhhhhh
Confidence            9998  99999999998632     34667999999998876322 2334567899999988 488999999976543

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.84  E-value=9.4e-21  Score=185.61  Aligned_cols=181  Identities=19%  Similarity=0.342  Sum_probs=126.3

Q ss_pred             CCceeccCCCceEEeCCCCCCCc-----cEEEEccCCCCCc-----------ccCCCeEEEee------CccEEEEeecc
Q psy14896        576 APEIGNQNWGKAMFCDPPTNYPG-----VNYYWARDYFPNF-----------VEEDKRVFVSY------DGALYFSALEQ  633 (813)
Q Consensus       576 ~~~~~~~g~~~~l~C~~~~~~p~-----~~v~W~k~~~~~~-----------~~~~~~~~~~~------~~~L~i~~~~~  633 (813)
                      .+..+.+|+.++|.|.+ .+.|.     +.|.|+|++....           .....++.+..      +++|.|.+++.
T Consensus         3 ~~v~~~~G~~v~L~C~~-~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~   81 (222)
T 4i0k_A            3 DPVVALVDTDATLRCSF-SPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRV   81 (222)
T ss_dssp             CCCCCCTTSCEEECCBC-CCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCG
T ss_pred             CCEEEECCCCeEEEEEe-cCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCccc
Confidence            34567889999999998 55543     7899999875431           12234555543      56799999999


Q ss_pred             cCCeeEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEe-cCCCCCeEEEEe-CCc
Q psy14896        634 IDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVA-FGYPVPSYNWTR-RGS  711 (813)
Q Consensus       634 ~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~-~g~P~p~i~W~k-~g~  711 (813)
                      +|+|.|+|.+.|.. ..   ...+.|.|..++....+..+.      ...+.+|+.++|.|.+ .|.|.|.|+|++ ++.
T Consensus        82 ~D~G~Y~C~~~~~~-~~---~~~~~l~V~~~~~~p~i~~~~------~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~  151 (222)
T 4i0k_A           82 TDEGSYTCFVSIQD-FD---SAAVSLQVAAPYSKPSMTLEP------NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGV  151 (222)
T ss_dssp             GGCSCEEEEEEECC-CC---CCCCCCCCCBCCCCCEEECCC-----------CCSEEEEEEEEEEEBSCCEEEEECTTSC
T ss_pred             ccCEEEEEEEEeCC-Cc---eEEEEEEEEcCCCCCcEEeCC------CceecCCceEEEEEecccccCCCeEEEEcCCCc
Confidence            99999999999863 21   233566666654433333221      1357789999999999 799999999999 566


Q ss_pred             ccCCCcee---eecc---eEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCCccccc
Q psy14896        712 PLPRNAYF---ENFN---RILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIP  767 (813)
Q Consensus       712 ~l~~~~~~---~~~~---~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~~~~~  767 (813)
                      .+......   ....   ..|.|.+++.+|+|.|+|.|.|..|....++.|.|.++|.....
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~  213 (222)
T 4i0k_A          152 PLTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQPLTFPP  213 (222)
T ss_dssp             BCCSEEEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC-------
T ss_pred             cCCCCcceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCCccccCC
Confidence            65543321   1112   34899999999999999999999999999999999999876543

>3g8l_A Lectin-related NK cell receptor LY49L1; natural killer cell receptor, immune system; 2.50A {Mus musculus}

Probab=99.84  E-value=1.6e-21  Score=182.93  Aligned_cols=122  Identities=17%  Similarity=0.222  Sum_probs=103.6

Q ss_pred             ccCCCch-hhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCe
Q psy14896         25 LELRCPQ-HWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLW  103 (813)
Q Consensus        25 ~~~~Cp~-~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~  103 (813)
                      ....||. ||..|+++||+|+... ++|.+|+..|+.+||+||+|++++|++||..++.    ...+||||.+...++.|
T Consensus        62 ~~~~Cp~~gW~~~~~~CY~~~~~~-~tw~~A~~~C~~~g~~LasI~s~~e~~fl~~~~~----~~~~WIGl~~~~~~~~w  136 (190)
T 3g8l_A           62 HTGRGFEKYWFCYGIKCYYFVMDR-KTWSGCKQTCQISSLSLLKIDNEDELKFLKLLVP----SDSYWIGLSYDNKKKDW  136 (190)
T ss_dssp             STTCEEEEEEEEEETEEEEEEEEE-ECHHHHHHHHHHTTCEECCCCSHHHHHHHHHHSC----SSCEEEEEEEETTTTEE
T ss_pred             CCCCCCCCCcEEECCEEEEEEccc-CCHHHHHHHHHhCCCEEeeeCCHHHHHHHHHhhC----cCCEEEEEEcCCCCCce
Confidence            4567999 9999999999999984 9999999999999999999999999999999863    45799999998889999


Q ss_pred             EEcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        104 VNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       104 ~W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      .|+||+++.+ . +|...|. ...++|+.|..  +  .  |.+..|.....|+|++.
T Consensus       137 ~W~DGs~~~~-~-~~~~~~~-~~~~~Cv~l~~--~--~--W~d~~C~~~~~fICek~  184 (190)
T 3g8l_A          137 AWINNGPSKL-A-LNTMKYN-IRDGGCMLLSK--T--R--LDNDNCDKSFICICGKR  184 (190)
T ss_dssp             EETTTBCCCC-C-CCGGGCC-GGGCSEEEECS--S--C--EEEECTTSCEEEEEEEE
T ss_pred             EeCCCCcccc-c-ccCCCCC-CCCCCeEEEeC--C--c--EECCCCCCCeeEEEeeC
Confidence            9999999887 3 3444332 34688999842  2  3  55999999999999995

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.84  E-value=4.7e-21  Score=183.42  Aligned_cols=170  Identities=11%  Similarity=0.067  Sum_probs=110.1

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccC
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED  268 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d  268 (813)
                      +|.|...|.. .+.+|     ++++|.|.+.+.|. .+.|||+|..+....       ........+++|.|.+. +.+|
T Consensus         5 ~P~i~~~p~~-~v~~G-----~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~-------~~~~~~~~~~~L~i~~v-~~~D   69 (196)
T 2d3v_A            5 KATLWAEPGS-VISRG-----NSVTIRCQGTLEAQ-EYRLVKEGSPEPWDT-------QNPLEPKNKARFSIPSM-TEHH   69 (196)
T ss_dssp             BCEEEEESCS-EEETT-----CCEEEEEECCTTCC-EEEEEETTCSSCSEE-------ECCCSSTTEEEEEESSC-CGGG
T ss_pred             CCEEEeCCCC-cccCC-----CeEEEEEeCCCCCc-EEEEEECCCCCCccc-------ccccCCccccEEEeccC-ChhH
Confidence            5888888874 56666     77999999998765 999999997652110       00001122456788775 8999


Q ss_pred             CeeEEEEeecCceee-EeeeeEEeeeeec-ccccCC-CCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCccE
Q psy14896        269 RGSYHCKASNKFGSI-ISESVQLAFGFIG-EFNLKR-APEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRV  345 (813)
Q Consensus       269 ~G~Y~C~a~n~~g~~-~s~~~~l~v~~~~-~~~~~~-~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~  345 (813)
                      +|.|+|.|.|..|.. .+..+.|.|...+ .+.+.. ....+.+|+.++|.|.+ .+.| +.+.|+|+|..+........
T Consensus        70 ~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~-~~~p-~~~~W~k~g~~~~~~~~~~~  147 (196)
T 2d3v_A           70 AGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGS-RLRF-DRFILTEEGDHKLSWTLDSQ  147 (196)
T ss_dssp             CEEEEEEEEETTEECBCCCCEEEEEECSSCCCEEEC-----------CEEEEEE-SSCC-SEEEEEEC---CCEEEEECE
T ss_pred             CeEEEEEEeCCCCcCCcCccEEEEecCCCCCCeEEccCCccccCCCcEEEEEEc-CCCC-CEEEEEccCCcccccccccc
Confidence            999999999988753 3566788887632 222222 22467889999999996 5667 89999999987532111111


Q ss_pred             EEcc---CccEEEeeeeecCCeeeEEEEeeecc
Q psy14896        346 FVSY---DGALYFSALEQIDAGNYSCNVQSKVS  375 (813)
Q Consensus       346 ~~~~---~~~L~i~~v~~~D~G~Y~C~a~n~~g  375 (813)
                      ....   .+.|.|.+++.+|+|.|+|.|.|..+
T Consensus       148 ~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          148 LTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHI  180 (196)
T ss_dssp             ECTTSCEEEEEECCCCBTTBCEEEEEEEEETTE
T ss_pred             cccCCCceeEEEeeecCcccCeeEEEEEEccCC
Confidence            1111   25899999999999999999999754

>2msb_A Mannose-binding protein-A; lectin; HET: BMA MAN; 1.70A {Rattus rattus} SCOP: d.169.1.1 PDB: 1msb_A 1ytt_A*

Probab=99.84  E-value=6.2e-21  Score=163.94  Aligned_cols=113  Identities=13%  Similarity=0.080  Sum_probs=96.3

Q ss_pred             cCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcCCCCCCccc
Q psy14896         36 YRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDGTNLNELD  115 (813)
Q Consensus        36 ~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~dgs~~~~~~  115 (813)
                      ++++||+++... ++|.+|+..|+.+||+||+|+|++|++||.+++.     ..+||||.+...++.|.|.||++++| .
T Consensus         1 ig~~Cy~~~~~~-~~w~~A~~~C~~~g~~La~i~s~~e~~~l~~~~~-----~~~WiGl~~~~~~~~w~W~dg~~~~~-~   73 (115)
T 2msb_A            1 SGKKFFVTNHER-MPFSKVKALCSELRGTVAIPRNAEENKAIQEVAK-----TSAFLGITDEVTEGQFMYVTGGRLTY-S   73 (115)
T ss_dssp             ---CEEEEEEEE-ECHHHHHHHHHHTTCEECCCSSHHHHHHHHHHHS-----SCEEEEEECSSSTTCCEETTSSBCCS-C
T ss_pred             CCCEEEEEeCCC-cCHHHHHHHHHhCCCEEeccCCHHHHHHHHHhhc-----CCEEEeeEcCCCCCcEEECCCCEeee-c
Confidence            368999999884 9999999999999999999999999999999872     57899999988899999999999987 6


Q ss_pred             cccCCCCCC-cccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        116 AAFLPEPAD-NVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       116 ~~~~~~p~~-~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      +|..++|++ ...++|+.|.. .    ..|.+..|.....|+|+++
T Consensus        74 ~W~~~~P~~~~~~~~C~~~~~-~----g~W~~~~C~~~~~fiCe~~  114 (115)
T 2msb_A           74 NWKKDEPNDHGSGEDCVTIVD-N----GLWNDISCQASHTAVCEFP  114 (115)
T ss_dssp             CBCTTCCCCCTTCCCEEEECT-T----SCEEEECTTSCEEEEEEEC
T ss_pred             CcCCCCCCCCCCCCCeEEECC-C----CCEECcCCCCCeEEEEeEc
Confidence            777779987 34689999862 2    2455999999999999974

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.84  E-value=1e-20  Score=176.60  Aligned_cols=159  Identities=18%  Similarity=0.246  Sum_probs=121.9

Q ss_pred             ccCCCceeccCCCceEEeCCCCCCC-ccEEEEccCCCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEEEEeeecCcc
Q psy14896        573 LKRAPEIGNQNWGKAMFCDPPTNYP-GVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTG  651 (813)
Q Consensus       573 ~~~~~~~~~~g~~~~l~C~~~~~~p-~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  651 (813)
                      ..+....+.+|+.++|.|.+ .+.| .+.+.|+|+|.++..         ..+.+.|.+++.+|+|.|+|.|.|..+   
T Consensus         9 ~~p~~~~v~~G~~v~l~C~~-~~~p~~~~~~W~~~g~~~~~---------~~~~~~~~~~~~~d~G~Y~C~~~~~~~---   75 (170)
T 3ry4_A            9 LEPPWINVLQEDSVTLTCQG-ARSPESDSIQWFHNGNLIPT---------HTQPSYRFKANNNDSGEYTCQTGQTSL---   75 (170)
T ss_dssp             EESCCSEEETTCEEEEEEES-CCCSSSSCEEEEETTEECTT---------CCSSEEEEECCGGGCEEEEEEETTSBC---
T ss_pred             eCCCCeEEECCCcEEEEEEe-cCCCCcceEEEEECCeEccc---------CccceEEEecccccCeEEEEEEeCCCc---
Confidence            33444567889999999999 5655 689999999875322         245688899999999999999997543   


Q ss_pred             ccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEec-CCCCCeEEEEeCCcccCCCceeeecceEEEECC
Q psy14896        652 RNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF-GYPVPSYNWTRRGSPLPRNAYFENFNRILTIPN  730 (813)
Q Consensus       652 ~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~-g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~  730 (813)
                        ...+.|.|..++....  .|       ...+.+|++++|.|.+. +.|.+.++|+|+|..+..    ......|.|.+
T Consensus        76 --s~~~~l~v~~~~~~~~--~~-------~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~----~~~~~~L~i~~  140 (170)
T 3ry4_A           76 --SDPVHLTVLFEWLVLQ--TP-------HLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKF----SHLDPTFSIPQ  140 (170)
T ss_dssp             --CCCEEEEEECCSEEEE--CS-------CSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEE----ESSCCEEEESS
T ss_pred             --eEeEEEEEECCceEec--CC-------CceeecCCeEEEEEECCCCCCCceEEEEECCeEccc----cCCCCeEEEEe
Confidence              2246788887653322  11       24578899999999995 567789999999988752    22356899999


Q ss_pred             CCCCCCEEEEEEEEcCCCc-eEEEEEEEEE
Q psy14896        731 VKVEDQGEYICRASNDRSA-LESSVTISIQ  759 (813)
Q Consensus       731 v~~~d~G~Y~C~a~N~~G~-~~~~~~l~V~  759 (813)
                      ++.+|+|.|+|.|.|..|. .+..+.|.|+
T Consensus       141 v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~  170 (170)
T 3ry4_A          141 ANHSHSGDYHCTGNIGYTLFSSKPVTITVQ  170 (170)
T ss_dssp             CCGGGCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             ccccCCEEEEEEEEeCcCccccccEEEEEC
Confidence            9999999999999999997 5667777764

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.84  E-value=2.4e-20  Score=177.01  Aligned_cols=180  Identities=12%  Similarity=0.087  Sum_probs=127.0

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccC
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED  268 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d  268 (813)
                      +|.|...|.. .+.+|     ++|+|.|.+.+ +.+.+.|||+|..+...       .........+++|.|.+. +.+|
T Consensus         4 ~P~i~~~p~~-~v~~G-----~~v~L~C~~~~-~~~~~~w~k~g~~~~~~-------~~~~~~~~~~~~L~I~~v-~~~D   68 (188)
T 1oll_A            4 KPFIWAEPHF-MVPKE-----KQVTICCQGNY-GAVEYQLHFEGSLFAVD-------RPKPPERINKVKFYIPDM-NSRM   68 (188)
T ss_dssp             CCEEEEESCS-EEETT-----CCEEEEEECCT-TCCEEEEEETTEEEEEE-------CCSSCTTCCEEEEEESSC-CGGG
T ss_pred             CCEEEeecCC-cCCCC-----CCEEEEEecCC-CCCEEEEEECCCccccc-------ccccCCCcceeEEEeCcC-Cccc
Confidence            5888888877 66666     77999999987 45799999999765311       001111123457888875 8999


Q ss_pred             CeeEEEEeecCcee-eEeeeeEEeeee---ecccccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCcc
Q psy14896        269 RGSYHCKASNKFGS-IISESVQLAFGF---IGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKR  344 (813)
Q Consensus       269 ~G~Y~C~a~n~~g~-~~s~~~~l~v~~---~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~  344 (813)
                      +|.|+|.|.|..+. ..+..+.|.|..   .|.+...+ ...+.+|+.++|.|.+. + +.+.+.|+|+|..+..   .+
T Consensus        69 ~G~Y~C~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p-~~~v~~G~~v~L~C~~~-~-~~~~~~w~k~g~~~~~---~~  142 (188)
T 1oll_A           69 AGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHP-GPEVISGEKVTFYCRLD-T-ATSMFLLLKEGRSSHV---QR  142 (188)
T ss_dssp             CEEEEEEEEETTEECCCCCCEEEEEESCSCCCEEEEES-CSEEETTCEEEEEEECS-S-SCSEEEEEEESSSCEE---EE
T ss_pred             CeEEEEEecCCCCCCCCCCceEEEecccCCCCeEEECC-CCccccCCEEEEEEEcC-C-CCCEEEEEECCccccc---cc
Confidence            99999999987653 235667787764   23333222 45678999999999963 3 4579999999987533   12


Q ss_pred             EEEccCccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEc
Q psy14896        345 VFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF  389 (813)
Q Consensus       345 ~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~  389 (813)
                      .....++.|.|.+++.+|+|.|+|.|.|........+..+.|.|.
T Consensus       143 ~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~  187 (188)
T 1oll_A          143 GYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT  187 (188)
T ss_dssp             EECSSEEEEEEEECCGGGCEEEEEECEEETTEECCCCCCEEEEEE
T ss_pred             cCCCceeEEEECCCCcCCCcEEEEEEEcCCCcCCCCCCcEEEEec
Confidence            223345689999999999999999999876333445666777763

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.84  E-value=1.1e-20  Score=181.36  Aligned_cols=182  Identities=15%  Similarity=0.172  Sum_probs=123.1

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccC
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED  268 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d  268 (813)
                      +|.|...|.. .+.+|     ++++|.|.+.+.|. .+.|||+|..+....       ........+++|.|.+. +.+|
T Consensus         5 ~P~i~~~p~~-~v~~G-----~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~-------~~~~~~~~~~~L~i~~v-~~~D   69 (198)
T 1ugn_A            5 KPTLWAEPGS-VITQG-----SPVTLRCQGGQETQ-EYRLYREKKTAPWIT-------RIPQELVKKGQFPIPSI-TWEH   69 (198)
T ss_dssp             CCEEEEESCS-EEETT-----CCEEEEEECCTTCC-CEEEEESSSCCHHHH-------TSCHHHHTTTEEEESSC-CGGG
T ss_pred             CCeEeccCCC-cccCC-----CcEEEEEEecCCCc-EEEEEECCccccccc-------cccccCCcccEEEECCC-CHHH
Confidence            6888888874 66666     77999999998775 799999998653110       11111223567888875 8999


Q ss_pred             CeeEEEEeecCc-ee-eEeeeeEEeeeee-cccccC-CCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCcc
Q psy14896        269 RGSYHCKASNKF-GS-IISESVQLAFGFI-GEFNLK-RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKR  344 (813)
Q Consensus       269 ~G~Y~C~a~n~~-g~-~~s~~~~l~v~~~-~~~~~~-~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~  344 (813)
                      +|.|+|.|.|.. |. ..+..+.|.|... +.+.+. .....+.+|+.++|.|.+. +. .+.+.|+|+|..+.... .+
T Consensus        70 ~G~Y~C~a~n~~~g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~-~~-~~~v~W~k~g~~~~~~~-~~  146 (198)
T 1ugn_A           70 TGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDSQ-VA-FDGFILCKEGEDEHPQC-LN  146 (198)
T ss_dssp             CEEEEEEEEETTTEECCCCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEECS-SC-CSEEEEEEC------CE-EE
T ss_pred             CeEEEEEEECCCCCcccCCccEEEEEcccccCCccccCCccccCCCCcEEEEEecC-CC-CcEEEEEECCCccCCcc-cc
Confidence            999999999987 63 3366788888763 222222 2236788999999999974 44 67999999998742211 11


Q ss_pred             EEEc----cCccEEEeeeeecCCeeeEEEEeeecccc--CCCCCceeeEE
Q psy14896        345 VFVS----YDGALYFSALEQIDAGNYSCNVQSKVSDT--GRNGPFFPLKV  388 (813)
Q Consensus       345 ~~~~----~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~--~~~s~~~~l~v  388 (813)
                      ....    ..+.|.|.+++.+|+|.|+|.|.|..+..  ...+..+.|.|
T Consensus       147 ~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V  196 (198)
T 1ugn_A          147 SQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLV  196 (198)
T ss_dssp             C------CCEEEEEECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEE
T ss_pred             ccccCCCcceeEEEecccCcccCeEEEEEEEeCCCCccccCcCceEEEEe
Confidence            1111    13689999999999999999999986532  23355566665

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.84  E-value=2.7e-20  Score=183.62  Aligned_cols=190  Identities=20%  Similarity=0.308  Sum_probs=136.5

Q ss_pred             CCCceeeCC----CceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCC
Q psy14896        188 RGPYFIKQP----TDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDP  263 (813)
Q Consensus       188 ~~P~~~~~p----~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~  263 (813)
                      .+|.|+..+    ....+.+|     +++.|.|.+.|.|.+.|.|||+|..+.....     .........+++|.|.+.
T Consensus        14 ~~P~~~~~~~~~~~~~~v~~G-----~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~-----~~~~~~~~~~~~L~i~~~   83 (231)
T 3ojm_B           14 RAPYWTNTEKMEKRLHAVPAA-----NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHR-----IGGYKVRNQHWSLIMESV   83 (231)
T ss_dssp             EEEEESCGGGGCCSCEEEETT-----SCEEEECCEEEESCCEEEEEETTEECCGGGS-----TTCCEEEGGGTEEEECSC
T ss_pred             cCCccccccccCceeEEEccC-----CCEEEEEecccCCCCeEEEEECCcccccccc-----ccceeeecCcceEEEecC
Confidence            457776665    67777777     6799999999999999999999987643211     111122233557888885


Q ss_pred             ccccCCeeEEEEeecCceeeEeeeeEEeeeeecc----ccc-CCCCceeecCCCeEEEecCCCCCCcceEEEee----cc
Q psy14896        264 RQVEDRGSYHCKASNKFGSIISESVQLAFGFIGE----FNL-KRAPEIGNQNWGKAMFCDPPTNYPGVNYYWAR----DY  334 (813)
Q Consensus       264 ~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~----~~~-~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k----~~  334 (813)
                       +.+|+|.|+|.|.|..|.. +..+.|.|...+.    +.. ......+.+|+.++|.|.+ .+.|.+.+.|++    +|
T Consensus        84 -~~~d~G~Y~C~~~n~~~~~-~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~p~v~W~~~~~~~g  160 (231)
T 3ojm_B           84 -VPSDKGNYTCVVENEYGSI-NHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKV-YSDAQPHIQWIKHVEKNG  160 (231)
T ss_dssp             -CGGGCEEEEEEEEETTEEE-EEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCE-ECSSCCEEEEEEECCBTT
T ss_pred             -CcccCEEEEEEEecccCcc-cccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEE-ecCCCCEEEEEECCCCCC
Confidence             8999999999999998876 5677777765322    111 2345677889999999995 678999999999    77


Q ss_pred             ccccccCCccEEE--------ccCccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCc
Q psy14896        335 FPNFVEEDKRVFV--------SYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSN  393 (813)
Q Consensus       335 ~~~~~~~~~~~~~--------~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~  393 (813)
                      ..+..........        ...+.|.|.++..+|+|.|+|.|.|..|...   ..+.|.|..+|.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~---~~~~l~V~~~p~  224 (231)
T 3ojm_B          161 SKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQAN---QSAWLTVLPKQQ  224 (231)
T ss_dssp             BSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEE---EEEEEEEECCC-
T ss_pred             ccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceEe---eEEEEEEecCCC
Confidence            6643333222211        1234699999999999999999999988653   347788876543

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.84  E-value=2e-20  Score=177.22  Aligned_cols=162  Identities=15%  Similarity=0.259  Sum_probs=120.1

Q ss_pred             ceeccCCCceEEeCCCCCCCcc--EEEEccCCCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEEEEeeecCccccCc
Q psy14896        578 EIGNQNWGKAMFCDPPTNYPGV--NYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGP  655 (813)
Q Consensus       578 ~~~~~g~~~~l~C~~~~~~p~~--~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  655 (813)
                      ..+.+|+.++|.|.+ .+.|.+  .+.|+|++.++.  .....  .....|.|.  ..+|+|.|+|.|.|..      ..
T Consensus         8 ~~v~~G~~v~l~C~~-~~~~~p~~~~~W~k~~~~l~--~~~~~--~~~~~l~i~--~~~d~G~Y~C~~~n~~------~~   74 (184)
T 3b5h_A            8 TVEDLGSKILLTCSL-NDSATEVTGHRWLKGGVVLK--EDALP--GQKTEFKVD--SDDQWGEYSCVFLPEP------MG   74 (184)
T ss_dssp             EEEEETTEEEEEEEE-ESCSSCCCEEEEESSSEEEE--CTTCC--CSEEEEEEC--GGGCCEEEEEEEESTT------SC
T ss_pred             EEEecCCCEEEEEEC-CCCCCCceEEEEEeCCEEee--ccccc--CCcEEEEEe--chhhCeEEEEEEECCc------Cc
Confidence            345779999999998 565666  999999986532  22111  112245555  6899999999999821      23


Q ss_pred             eeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCC-CCeEEEEe---CCcc-cCCC--ceee----ecce
Q psy14896        656 FFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYP-VPSYNWTR---RGSP-LPRN--AYFE----NFNR  724 (813)
Q Consensus       656 ~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P-~p~i~W~k---~g~~-l~~~--~~~~----~~~~  724 (813)
                      .+.|.|..+|.+...        .....+.+|+.++|.|.+.|.| .|.|+|+|   ++.. +...  .++.    ....
T Consensus        75 ~~~l~V~~~P~~~~~--------~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (184)
T 3b5h_A           75 TANIQLHGPPRVKAV--------KSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRS  146 (184)
T ss_dssp             EEEEEECCSCCCEES--------CSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEE
T ss_pred             EEEEEEecCCceeec--------CCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCee
Confidence            578999888866542        1224678999999999999999 79999999   5543 4322  2221    2235


Q ss_pred             EEEECCCC-CCCCEEEEEEEEcCCCceEEEEEEEEEc
Q psy14896        725 ILTIPNVK-VEDQGEYICRASNDRSALESSVTISIQA  760 (813)
Q Consensus       725 ~L~i~~v~-~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  760 (813)
                      .|.|.+++ .+|+|.|+|.|.|.+|..+..+.|.|..
T Consensus       147 ~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  183 (184)
T 3b5h_A          147 ELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRS  183 (184)
T ss_dssp             EEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             EEEEeeccccccCceEEEEEEeCCCcceEEEEEEEec
Confidence            89999999 9999999999999999999999999864

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.84  E-value=1.6e-20  Score=179.73  Aligned_cols=182  Identities=15%  Similarity=0.175  Sum_probs=127.6

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccC
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED  268 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d  268 (813)
                      +|.|...|.. .+.+|     ++++|.|.+.+ |.+.+.|+|+|..+......       ......+++|.|.+. +.+|
T Consensus         5 ~P~i~~~p~~-~v~~G-----~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~-------~~~~~~~~~L~i~~v-~~~D   69 (196)
T 3p2t_A            5 KPTLWAEPGS-VISWG-----NSVTIWCQGTL-EAREYRLDKEESPAPWDRQN-------PLEPKNKARFSIPSM-TEDY   69 (196)
T ss_dssp             CCEEEEESCS-EEETT-----CCEEEEEECCT-TCCEEEEEETTSCSCSEEEC-------CCSSSSEEEEEESSC-CGGG
T ss_pred             CCEEEccCCC-cCCCC-----CcEEEEeeCCC-CCCEEEEEECCCCCcccccc-------cccCCceEEEEeccC-Cccc
Confidence            5888888887 66666     77999999999 78899999999765211000       000012456888775 8999


Q ss_pred             CeeEEEEeecCce-eeEeeeeEEeeeeec---ccccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCcc
Q psy14896        269 RGSYHCKASNKFG-SIISESVQLAFGFIG---EFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKR  344 (813)
Q Consensus       269 ~G~Y~C~a~n~~g-~~~s~~~~l~v~~~~---~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~  344 (813)
                      +|.|+|.|.|..| ...+..+.|.|...+   .+..... ..+.+|+.++|.|.+ .+ +.+.+.|+|+|..+.......
T Consensus        70 ~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~~~~~~~-~~v~~G~~v~L~C~~-~~-~~~~~~w~k~g~~~~~~~~~~  146 (196)
T 3p2t_A           70 AGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPS-PLVTSGKSVTLLCQS-RS-PMDTFLLCKERAAHPLLCLRS  146 (196)
T ss_dssp             CEEEEEEEEETTEEBCCCCCEEEEEECSSCCCEEEEESC-SEECTTCCEEEEEEE-EE-EEEEEEEEETTCCCGGGSEEE
T ss_pred             CceEEEEEeCCCcccCCCccEEEEecCCCCCCEEEeCCc-ceecCCCeEEEEEec-CC-CCCEEEEEeCCCcccceeecc
Confidence            9999999999988 344667888876432   2222222 367889999999996 34 567999999998753322111


Q ss_pred             --EEEccCccEEEeeeeecCCeeeEEEEeeecccc--CCCCCceeeEE
Q psy14896        345 --VFVSYDGALYFSALEQIDAGNYSCNVQSKVSDT--GRNGPFFPLKV  388 (813)
Q Consensus       345 --~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~--~~~s~~~~l~v  388 (813)
                        ......+.|.|.+++.+|+|.|+|.|.|..+..  ...+..+.|.|
T Consensus       147 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~S~~~~l~V  194 (196)
T 3p2t_A          147 EHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPLELIV  194 (196)
T ss_dssp             EEEEEEEEEEEEECSCCGGGCEEEEEEEECGGGTTEECCCCCCEEEEE
T ss_pred             cccccCcceEEEeCCCcccCCCeEEEEEEcCCCCcccCCCCCCEEEEe
Confidence              112335689999999999999999999987632  33344566655

>1wk1_A Hypothetical protein YK1067A12; lectin C-type domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Caenorhabditis elegans} SCOP: d.169.1.1

Probab=99.83  E-value=6.7e-21  Score=172.48  Aligned_cols=119  Identities=18%  Similarity=0.146  Sum_probs=101.5

Q ss_pred             ccCCeEEEEecCCc---CCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcCCCCC
Q psy14896         35 QYRDSCYRFVKSPL---KTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDGTNL  111 (813)
Q Consensus        35 ~~~~~Cy~~~~~~~---~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~dgs~~  111 (813)
                      .|+++||+|+.. .   ++|.+|+..|+.+||+||+|++++|++||.+++.    ...+||||.+ ..++.|.|.||+++
T Consensus         2 ~~~~~CY~~~~~-~~~~~~w~~A~~~C~~~g~~La~i~s~~e~~~l~~~~~----~~~~WIGl~~-~~~~~w~W~dg~~~   75 (150)
T 1wk1_A            2 SSGSSGVKFLTV-NDDILSMPQARNFCASAGGYLADDLGDDKNNFYSSIAA----NTQFWIGLFK-NSDGQFYWDRGQGI   75 (150)
T ss_dssp             CCSSCCCCSSSC-CSSCBCHHHHHHHHHHHTCEECCCCSHHHHHHHHHHTT----TCEEEEEEEE-CSSSCEEECCSSSS
T ss_pred             ccCCEEEEEEec-CCCccCHHHHHHHHHhCCCEEeeeCCHHHHHHHHHhhc----cCCEEEEEEe-CCCCcEEeCCCCcc
Confidence            488999999987 6   8999999999999999999999999999999974    2469999999 88899999999998


Q ss_pred             -------CccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        112 -------NELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       112 -------~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                             .| .+|..++|++...++|+.|..........|.+..|.....|+|++.
T Consensus        76 ~~~~~~~~y-~~W~~geP~~~~~~~Cv~~~~~~~~~~~~W~d~~C~~~~~fICe~~  130 (150)
T 1wk1_A           76 NPDLLNQPI-TYWANGEPSNDPTRQCVYFDGRSGDKSKVWTTDTCATPRPFICQKH  130 (150)
T ss_dssp             CCEECCCSC-CCBCTTCSCCCSSCCEEEEESSCSCGGGCEEEECTTSCBCCCEECC
T ss_pred             ccccccCCc-CCCCCCCCCCCCCCCcEEEeCccCCCCCEEeCcCcCCCeeEEEeec
Confidence                   55 6777779988667899999743212234566999999999999985

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.83  E-value=3.9e-20  Score=174.82  Aligned_cols=171  Identities=15%  Similarity=0.114  Sum_probs=123.6

Q ss_pred             CCCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCcccc
Q psy14896        188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE  267 (813)
Q Consensus       188 ~~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~  267 (813)
                      .+|.|...|.. .+.+|     ++++|.|.+.+ |.+.+.|||+|..                ....+++|.|.+. +.+
T Consensus         7 ~~P~i~~~p~~-~v~~G-----~~v~L~C~~~~-~~~~~~W~k~g~~----------------~~~~~~~L~i~~v-~~~   62 (184)
T 2gi7_A            7 PKPSLQALPSS-LVPLE-----KPVTLRCQGPP-GVDLYRLEKLSSS----------------RYQDQAVLFIPAM-KRS   62 (184)
T ss_dssp             CCCEEEEESCS-EEETT-----CCEEEEEECST-TCSEEEEEETTTC----------------CEESSSEEEESSC-CGG
T ss_pred             CCCeEEeCCCc-cccCC-----CcEEEEEeCCC-CCCEEEEEECCcc----------------ccCcccEEEECcC-Chh
Confidence            36888888875 66666     77999999988 8899999999953                1234677888875 899


Q ss_pred             CCeeEEEEeecCcee-eEeeeeEEeeeee---cccccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCc
Q psy14896        268 DRGSYHCKASNKFGS-IISESVQLAFGFI---GEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDK  343 (813)
Q Consensus       268 d~G~Y~C~a~n~~g~-~~s~~~~l~v~~~---~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~  343 (813)
                      |+|.|+|.|.|..|. ..+..+.|.|...   |.+...+ ...+.+|+.++|.|.+ .+. ++.+.|+|+|..+...  .
T Consensus        63 D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~p-~~~v~~G~~v~l~C~~-~~~-~~~~~w~k~g~~~~~~--~  137 (184)
T 2gi7_A           63 LAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQP-GPAVSSGGDVTLQCQT-RYG-FDQFALYKEGDPAPYK--N  137 (184)
T ss_dssp             GCEEEEEEEEETTEEBCCCCCEEEEEESSSCCCEEEEEC-CCSSCCTTCEEEEEEC-SSC-CCEEEEEECCCCTTSC--C
T ss_pred             hCceEEEEEEcCCCccCCCCCEEEEecCcCCCCEEEeCC-CceecCCCcEEEEEEc-CCC-CcEEEEEECCCcCcce--e
Confidence            999999999998874 3355677777442   2232223 4466789999999995 443 4699999999875331  1


Q ss_pred             cEEEccCccEEEeeeeecCCeeeEEEEeeecccc--CCCCCceeeEE
Q psy14896        344 RVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDT--GRNGPFFPLKV  388 (813)
Q Consensus       344 ~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~--~~~s~~~~l~v  388 (813)
                      + .....+.|.|.+++.+|+|.|+|.|.|..+..  ...+..+.|.|
T Consensus       138 ~-~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V  183 (184)
T 2gi7_A          138 P-ERWYRASFPIITVTAAHSGTYRCYSFSSRDPYLWSAPSDPLELVV  183 (184)
T ss_dssp             C-CEEEEESSSEEEETTCCSEEEEEEEECTTSTTBCCCCCCCEEEEC
T ss_pred             c-CCCceEEEEEccCCccCCeEEEEEEEeCCCCcccCCCCCcEEEEe
Confidence            1 22345689999999999999999999976532  22244444443

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.83  E-value=1.5e-20  Score=182.88  Aligned_cols=183  Identities=15%  Similarity=0.173  Sum_probs=129.7

Q ss_pred             CCceeecCCCccccccEEEEeeeccCC----CCeEEEeeccccc--------cccccccc---ccCCCccEEee------
Q psy14896        196 PTDVVFDLSKRSILNDITLSCYAGGYP----NPSYEWFKEDYVQ--------DRLVANLI---DPLSDKRFTLS------  254 (813)
Q Consensus       196 p~~~~v~~g~~~~g~~v~l~C~~~g~P----~p~v~W~k~g~~l--------~~~~~~~~---~~~~~~~~~~~------  254 (813)
                      +..+.+.+|     ++++|.|.+.+.|    .+.|.|+|++...        .......+   ......++.+.      
T Consensus         7 ~~~v~v~~G-----~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~   81 (214)
T 3jz7_A            7 EQRIEKAKG-----ETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKS   81 (214)
T ss_dssp             EEEEEEETT-----SCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGG
T ss_pred             CceEEEecC-----CCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccC
Confidence            345666666     7799999999877    4699999955221        00000000   11223344442      


Q ss_pred             -CCeEEEcCCccccCCeeEEEEeecCceeeEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCcceEEEeec
Q psy14896        255 -GGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARD  333 (813)
Q Consensus       255 -~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~  333 (813)
                       +++|.|.+. +.+|+|.|+|.|.|..|.. +..+.|.|..+|.+........+.+|+.++|.|.+..|.|.+.++|+|+
T Consensus        82 ~~~~L~i~~v-~~~D~G~Y~C~~~~~~~~~-~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~  159 (214)
T 3jz7_A           82 GDASINVTNL-QLSDIGTYQCKVKKAPGVA-NKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKL  159 (214)
T ss_dssp             TBCCEEECSC-CGGGCEEEEEEEEETTEEE-EEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEEC
T ss_pred             CcccEEEccC-ChhhCeEEEEEEEeCCCcc-ccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCCCCCCCEEEEEEC
Confidence             467888885 8999999999999998876 7788999988777655544455778999999999768899999999996


Q ss_pred             cccccccCCccEEEccCccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEc
Q psy14896        334 YFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF  389 (813)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~  389 (813)
                      +....+... +.....++.|.|.++..+|+|.|+|.|.|..|....   .+.|.|.
T Consensus       160 ~~~~~~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~---~~~l~V~  211 (214)
T 3jz7_A          160 SDSQTMPTP-WLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQC---MLRLDVV  211 (214)
T ss_dssp             STTCCCCGG-GGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEEEE---EEEECCB
T ss_pred             CCCCccCcc-ceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEE---EEEEEEe
Confidence            544323222 222334569999999999999999999999876532   3666665

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.83  E-value=1.7e-20  Score=178.58  Aligned_cols=162  Identities=19%  Similarity=0.197  Sum_probs=117.2

Q ss_pred             CceeccCCCceEEeCCCCCCCccEEEEccCCCCCcc--c-----------C---CCeEEEeeCccEEEEeecccCCeeEE
Q psy14896        577 PEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFV--E-----------E---DKRVFVSYDGALYFSALEQIDAGNYS  640 (813)
Q Consensus       577 ~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~--~-----------~---~~~~~~~~~~~L~i~~~~~~d~G~Y~  640 (813)
                      ...+.+|+.++|.|.+..+.+.+.|.|+|++..+..  .           .   ..|+.+..+++|+|.+++.+|+|.|+
T Consensus         7 ~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~   86 (193)
T 2if7_A            7 MVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGSYR   86 (193)
T ss_dssp             EEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGGCEEEE
T ss_pred             EEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcccCceEE
Confidence            345678999999999854456679999998753211  0           0   13566666788999999999999999


Q ss_pred             EEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCC-eEEEEEEecCC-CCCeEEEEeCCcccCCCce
Q psy14896        641 CNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGD-KVRLECVAFGY-PVPSYNWTRRGSPLPRNAY  718 (813)
Q Consensus       641 C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~-~v~l~C~~~g~-P~p~i~W~k~g~~l~~~~~  718 (813)
                      |.|.|..|...   ..+.|.|..++....+....       ..+..|. +++|.|.+.|. |.|.|+|+|+|..+..   
T Consensus        87 C~~~~~~~~~~---~~~~L~V~~~~~~p~i~~~~-------~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~---  153 (193)
T 2if7_A           87 AQISTKTSAKL---SSYTLRILRQLRNIQVTNHS-------QLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSS---  153 (193)
T ss_dssp             EEEECSSCEEE---EEEEEEEECCCEEEEEEECC-------C---CSSEEEEEEEEEESCCTTCEEEEEETTEEEES---
T ss_pred             EEEEecCCCeE---EEEEEEEEccCCCCeEecCc-------eeecCCCceEEEEEEEecCCCceEEEEEeCCEEcCC---
Confidence            99999876532   25778887765443332211       1234565 89999999985 5789999999987643   


Q ss_pred             eeecceEEEECCCCCC-CCEEEEEEEEcCCCceEEEEE
Q psy14896        719 FENFNRILTIPNVKVE-DQGEYICRASNDRSALESSVT  755 (813)
Q Consensus       719 ~~~~~~~L~i~~v~~~-d~G~Y~C~a~N~~G~~~~~~~  755 (813)
                          ...|+|.....+ |+|.|+|.|.|.+|..+..+.
T Consensus       154 ----~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~~~  187 (193)
T 2if7_A          154 ----QPNLTVSWDPRISSEQDYTCIAENAVSNLSFSVS  187 (193)
T ss_dssp             ----SSEEEEEECTTTCSCCEEEEEEEETTEEEEEEEE
T ss_pred             ----CCeEEEEeccCcCCCCcEEEEEECCCCccccccc
Confidence                345777654554 899999999999998876544

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.83  E-value=2.5e-20  Score=173.98  Aligned_cols=165  Identities=15%  Similarity=0.186  Sum_probs=126.3

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCC-CCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCcccc
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYP-NPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE  267 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P-~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~  267 (813)
                      +|.|...|....+.+|     +++.|.|.+.+.| .+.+.|||+|..+..                ..+.++|.+. +.+
T Consensus         4 ~p~i~~~p~~~~v~~G-----~~v~l~C~~~~~p~~~~~~W~~~g~~~~~----------------~~~~~~~~~~-~~~   61 (170)
T 3ry4_A            4 KAVLKLEPPWINVLQE-----DSVTLTCQGARSPESDSIQWFHNGNLIPT----------------HTQPSYRFKA-NNN   61 (170)
T ss_dssp             BCEEEEESCCSEEETT-----CEEEEEEESCCCSSSSCEEEEETTEECTT----------------CCSSEEEEEC-CGG
T ss_pred             CCEEEeCCCCeEEECC-----CcEEEEEEecCCCCcceEEEEECCeEccc----------------CccceEEEec-ccc
Confidence            4778888888777777     6799999999887 679999999986521                1334666664 899


Q ss_pred             CCeeEEEEeecCceeeEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCccEEE
Q psy14896        268 DRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFV  347 (813)
Q Consensus       268 d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~  347 (813)
                      |+|.|+|.|.|..+   +..+.|.|..++.. .......+.+|+.++|.|.+..+.|.+.+.|+|+|.++..       .
T Consensus        62 d~G~Y~C~~~~~~~---s~~~~l~v~~~~~~-~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~-------~  130 (170)
T 3ry4_A           62 DSGEYTCQTGQTSL---SDPVHLTVLFEWLV-LQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKF-------S  130 (170)
T ss_dssp             GCEEEEEEETTSBC---CCCEEEEEECCSEE-EECSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEE-------E
T ss_pred             cCeEEEEEEeCCCc---eEeEEEEEECCceE-ecCCCceeecCCeEEEEEECCCCCCCceEEEEECCeEccc-------c
Confidence            99999999998654   45677887765432 3344556778999999999767778899999999986421       2


Q ss_pred             ccCccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEE
Q psy14896        348 SYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKV  388 (813)
Q Consensus       348 ~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v  388 (813)
                      ..++.|.|.+++.+|+|.|+|.|.|..|.  ..+..+.|.|
T Consensus       131 ~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~--~~s~~~~l~V  169 (170)
T 3ry4_A          131 HLDPTFSIPQANHSHSGDYHCTGNIGYTL--FSSKPVTITV  169 (170)
T ss_dssp             SSCCEEEESSCCGGGCEEEEEEEEETTEE--EECCCEEEEE
T ss_pred             CCCCeEEEEeccccCCEEEEEEEEeCcCc--cccccEEEEE
Confidence            34568999999999999999999998874  2344466665

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.83  E-value=5.2e-20  Score=182.90  Aligned_cols=189  Identities=20%  Similarity=0.296  Sum_probs=132.8

Q ss_pred             CCceeeC----CCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCc
Q psy14896        189 GPYFIKQ----PTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPR  264 (813)
Q Consensus       189 ~P~~~~~----p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~  264 (813)
                      +|.|+..    +..+.+.+|     +++.|.|.+.|.|.+.|.|||+|..+....     ..........+++|.|.+. 
T Consensus        11 ~P~~~~p~~~~~~~~~v~~G-----~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~-----~~~~~~~~~~~~~L~i~~v-   79 (241)
T 3grw_A           11 APYWTRPERMDKKLLAVPAA-----NTVRFRCPAAGNPTPSISWLKNGREFRGEH-----RIGGIKLRHQQWSLVMESV-   79 (241)
T ss_dssp             CCEESSGGGGSCCEEEEETT-----SEEEEECCEECSSCCEEEEEETTEECCGGG-----STTCCEEEGGGTEEEECSC-
T ss_pred             CceeEcCCCCCCcceEEcCC-----CeEEEEEEecCCCCceeEEEECCcccCCCC-----cccceeeeccceEEEEEeC-
Confidence            5666644    345677666     779999999999999999999998764321     1111223334667888885 


Q ss_pred             cccCCeeEEEEeecCceeeEeeeeEEeeeeecc----cc-cCCCCceeecCCCeEEEecCCCCCCcceEEEee----ccc
Q psy14896        265 QVEDRGSYHCKASNKFGSIISESVQLAFGFIGE----FN-LKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWAR----DYF  335 (813)
Q Consensus       265 ~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~----~~-~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k----~~~  335 (813)
                      +.+|+|.|+|.|.|..|.. +..+.|.|...+.    +. .......+.+|+.++|.|.+ .+.|.+.+.|++    ++.
T Consensus        80 ~~~d~G~Y~C~~~~~~~~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~-~~~p~p~v~W~~~~~~~g~  157 (241)
T 3grw_A           80 VPSDRGNYTCVVENKFGSI-RQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKV-YSDAQPHIQWLKHVEVNGS  157 (241)
T ss_dssp             CGGGCEEEEEEEEETTEEE-EEEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEE-ECSSCCEEEEEEECCSSSC
T ss_pred             CcccCEEEEEEEeecCCce-EEEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEE-ecCCCCEEEEEEcccCCCc
Confidence            8999999999999998876 5667777765322    11 12445567789999999996 678999999999    777


Q ss_pred             cccccCCccEEEc---------cCccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCc
Q psy14896        336 PNFVEEDKRVFVS---------YDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSN  393 (813)
Q Consensus       336 ~~~~~~~~~~~~~---------~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~  393 (813)
                      .+...........         ..+.|.|.++..+|+|.|+|.|.|..|....   .+.|.|..+|.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~---~~~l~V~~~p~  221 (241)
T 3grw_A          158 KVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEK---AFWLSVHGPRA  221 (241)
T ss_dssp             SSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEE---EEEEEC-----
T ss_pred             ccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceEEE---EEEEEecCCCC
Confidence            6543333222211         2347999999999999999999998876533   37788776544

>1rdl_1 SUB-MBP-C, mannose-binding protein-C; C-type lectin, calcium-binding protein; HET: MMA; 1.70A {Rattus rattus} SCOP: d.169.1.1 PDB: 1rdj_1* 1rdk_1* 1rdi_1* 1rdm_1* 1rdn_1* 1rdo_1 1bv4_A 1kza_1* 1kzb_1* 1kzc_1* 1kzd_1* 1kze_1*

Probab=99.83  E-value=2.9e-20  Score=159.08  Aligned_cols=111  Identities=17%  Similarity=0.193  Sum_probs=96.0

Q ss_pred             CeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcCCCCCCccccc
Q psy14896         38 DSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDGTNLNELDAA  117 (813)
Q Consensus        38 ~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~dgs~~~~~~~~  117 (813)
                      .+||+++... ++|.+|+..|+.+||+||+|++++|++||.+++     ...+||||.+...++.|.|.||+++.| .+|
T Consensus         1 ~~CY~~~~~~-~~w~~A~~~C~~~g~~La~i~s~~e~~~l~~~~-----~~~~WIGl~~~~~~~~~~W~dg~~~~y-~~W   73 (113)
T 1rdl_1            1 KKYFMSSVRR-MPLNRAKALCSELQGTVATPRNAEENRAIQNVA-----KDVAFLGITDQRTENVFEDLTGNRVRY-TNW   73 (113)
T ss_dssp             -CEEEECSSC-BCHHHHHHHHHHTTCEECCCCSHHHHHHHHHHC-----SSCEEEEEECSSSTTCCEETTSCBCCC-CCB
T ss_pred             CeEEEEeCCc-cCHHHHHHHHHhcCCEEcccCCHHHHHHHHHHh-----cCCEEEEeECCCCCCcEEECCCCEeec-CCC
Confidence            4799999985 999999999999999999999999999999886     357999999988899999999999987 677


Q ss_pred             cCCCCCC-cccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        118 FLPEPAD-NVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       118 ~~~~p~~-~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      ..++|++ ...++|+.|...     ..|.+..|.....|+|+.+
T Consensus        74 ~~~~P~~~~~~~~Cv~~~~~-----g~w~~~~C~~~~~~ICe~~  112 (113)
T 1rdl_1           74 NEGEPNNVGSGENCVVLLTN-----GKWNDVPCSDSFLVVCEFS  112 (113)
T ss_dssp             CTTCCCCCTTCCCEEEECTT-----SCEEEECTTSCBEEEEEEC
T ss_pred             CCCcCCCCCCCCCeeEECCC-----CcEeccCCCCCceEEEeeC
Confidence            7779987 357899998531     3455999999999999974

>1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin, C-type lectin, alpha-helical coiled coil, carbohydrate recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A* 3ikr_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A* 2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A* 1b08_A 3g84_A* ...

Probab=99.83  E-value=4.3e-21  Score=178.49  Aligned_cols=123  Identities=15%  Similarity=0.133  Sum_probs=106.6

Q ss_pred             CCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcC
Q psy14896         28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNED  107 (813)
Q Consensus        28 ~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~d  107 (813)
                      .|+.+|..|+++||+++.. .++|.+|+..|+.+||+||+|+|++|++||.+++...  ...+||||++...++.|.|.|
T Consensus        54 ~~~~~~~~~~~~Cy~~~~~-~~~w~~A~~~C~~~gg~La~i~s~~e~~~l~~~~~~~--~~~~WIGl~~~~~~~~w~W~d  130 (177)
T 1pwb_A           54 ELFPNGQSVGEKIFKTAGF-VKPFTEAQLLCTQAGGQLASPRSAAENAALQQLVVAK--NEAAFLSMTDSKTEGKFTYPT  130 (177)
T ss_dssp             HHTTTEEEETTEEEEEEEE-EEEHHHHHHHHHHTTSEECCCCSHHHHHHHHHHHHHH--TCCEECSCBCSSSTTCCBCTT
T ss_pred             hcCCCeEEECCEEEEEcCC-ccCHHHHHHHHHhcCCEEcccCCHHHHHHHHHHHhcC--CCcEEEEEeccCcCCceEeCC
Confidence            4778999999999999988 4999999999999999999999999999999988542  367999999988899999999


Q ss_pred             CCCCCccccccCCCCCCc-ccCCeEEEEeeccccccceeeccCCCceeeeeee
Q psy14896        108 GTNLNELDAAFLPEPADN-VQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEA  159 (813)
Q Consensus       108 gs~~~~~~~~~~~~p~~~-~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~  159 (813)
                      |+++.| .+|..++|++. ..++|+.|..     ...|.+..|.....|+|+.
T Consensus       131 G~~~~y-~~W~~geP~~~~~~~~Cv~~~~-----~g~W~d~~C~~~~~fICe~  177 (177)
T 1pwb_A          131 GESLVY-SNWAPGEPNDDGGSEDCVEIFT-----NGKWNDRACGEKRLVVCEF  177 (177)
T ss_dssp             SCBCSC-CCBCTTCCCCGGGCCCEEEECT-----TSCEEEECTTSEEEEEEEC
T ss_pred             cCCccc-CCcCCCcCCCCCCCCCcEEECC-----CCcEeCCCCCCCeeEEEeC
Confidence            999987 67777799874 4789999853     1345599999999999974

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.83  E-value=1.8e-20  Score=179.68  Aligned_cols=183  Identities=13%  Similarity=0.180  Sum_probs=124.4

Q ss_pred             eeCCCceee-cCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe--eCCeEEEcCCccccCC
Q psy14896        193 IKQPTDVVF-DLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL--SGGNLIINDPRQVEDR  269 (813)
Q Consensus       193 ~~~p~~~~v-~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~~d~  269 (813)
                      ...|.+..+ .+|     ++++|.|.+.|.|.|.|.|+|+...          +..+ +...  .+++|.|.+. +.+|+
T Consensus         4 ~i~p~~~~~~~~G-----~~v~L~C~~~g~P~p~i~W~~~~~~----------~~~~-~~~~~~~~~~L~I~~v-~~~D~   66 (202)
T 1vca_A            4 ETTPESRYLAQIG-----DSVSLTCSTTGCESPFFSWRTQIDS----------PLNG-KVTNEGTTSTLTMNPV-SFGNE   66 (202)
T ss_dssp             EEESSSEEEEETT-----SCEEEEEEEESCSSCEEEEEETTCC----------CCSS-EEEEETTEEEEEESSC-CGGGC
T ss_pred             EECCCCcEEEcCC-----CcEEEEEeecCCCCCeEEEECCCCC----------Cccc-eEEEcCCccEEEECcC-CHHHC
Confidence            344555443 355     7799999999999999999995321          0111 1111  2346777775 89999


Q ss_pred             eeEEEEeecCceeeEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCc--ceEEEeeccccccccCCccE--
Q psy14896        270 GSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPG--VNYYWARDYFPNFVEEDKRV--  345 (813)
Q Consensus       270 G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~--~~v~W~k~~~~~~~~~~~~~--  345 (813)
                      |.|+|.|.|..|.. +..+.|.|..+|..........+.+|+.++|.|.+..+.|.  ++|+|+|++.++........  
T Consensus        67 G~Y~C~a~n~~~~~-~~~~~l~V~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~  145 (202)
T 1vca_A           67 HSYLCTATCESRKL-EKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDAD  145 (202)
T ss_dssp             SEEEEEEEETTEEE-EEEEEEEEEBCCSCCEEEESSCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCS
T ss_pred             EEEEEEEEECCceE-eeEEEEEEEeCCCCCEeCCceEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccC
Confidence            99999999998875 77889999877653332223678899999999997555564  48999999987532210000  


Q ss_pred             ---EEccCccEEEeeeeecCCeeeEEEEeeeccccC----CCCCceeeEEccCCc
Q psy14896        346 ---FVSYDGALYFSALEQIDAGNYSCNVQSKVSDTG----RNGPFFPLKVFPHSN  393 (813)
Q Consensus       346 ---~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~----~~s~~~~l~v~~~~~  393 (813)
                         .......|.|..+..+|.|.|+|+|.|..+...    .....+.|.|.++|.
T Consensus       146 ~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~  200 (202)
T 1vca_A          146 RKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPK  200 (202)
T ss_dssp             SCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred             cCcceEEEEEEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCCC
Confidence               001122467888888899999999999887532    123457788877653

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.83  E-value=1.5e-20  Score=184.09  Aligned_cols=176  Identities=15%  Similarity=0.173  Sum_probs=122.0

Q ss_pred             CCceeccCCCceEEeCCCCCCC-----ccEEEEccCCCCCc-------------ccCCCeEEEeeC------ccEEEEee
Q psy14896        576 APEIGNQNWGKAMFCDPPTNYP-----GVNYYWARDYFPNF-------------VEEDKRVFVSYD------GALYFSAL  631 (813)
Q Consensus       576 ~~~~~~~g~~~~l~C~~~~~~p-----~~~v~W~k~~~~~~-------------~~~~~~~~~~~~------~~L~i~~~  631 (813)
                      .+..+.+|+.++|.|.+ .+.|     ...|.|+|++..+.             .....+..+..+      .+|.|.++
T Consensus         9 ~~v~~~~G~~v~L~C~~-~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v   87 (222)
T 3sbw_C            9 DLYVVEYGSNMTIECKF-PVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDV   87 (222)
T ss_dssp             SEEEEETTSCEEEEEEC-CCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSC
T ss_pred             ccEEEEcCCcEEEEeEe-cCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCc
Confidence            34567889999999998 5555     34899999752111             111245555433      37999999


Q ss_pred             cccCCeeEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeC-C
Q psy14896        632 EQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRR-G  710 (813)
Q Consensus       632 ~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~-g  710 (813)
                      +.+|+|.|+|.|.| .|..   ...+.|.|..++.......        ...+.+|+.++|.|.+.|.|.|.|+|+++ |
T Consensus        88 ~~~D~G~Y~C~~~~-~~~~---~~~~~l~V~~~~~~~~~~~--------~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g  155 (222)
T 3sbw_C           88 KLQDAGVYRCMISY-GGAD---YKRITVKVNAPYNKINQRI--------LVVDPVTSEHELTCQAEGYPKAEVIWTSSDH  155 (222)
T ss_dssp             CGGGCEEEEEEEES-SSEE---EEEEEEEEEBCCCCCEEEE--------EEEETTTTEEEEEEEEEEBSCCEEEEEETTC
T ss_pred             ccccCeEEEEEEEe-CCCc---eeEEEEEEECCCCCCCcee--------eeeecCCCcEEEEEEecCCCCCeEEEEECCC
Confidence            99999999999998 4332   2347788876654332211        02467899999999999999999999999 6


Q ss_pred             cccCCCcee---eecceE---EEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCCcc
Q psy14896        711 SPLPRNAYF---ENFNRI---LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNF  764 (813)
Q Consensus       711 ~~l~~~~~~---~~~~~~---L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~~  764 (813)
                      ..+......   ...+..   +.+..+..+|+|.|+|.|.|..|....++.|.|..+|..
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~p~~  215 (222)
T 3sbw_C          156 QVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPLA  215 (222)
T ss_dssp             CEECCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCCC---
T ss_pred             ceecCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecCCccc
Confidence            666543321   111221   222244578999999999999999999999999987753

>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A

Probab=99.83  E-value=1.7e-20  Score=169.29  Aligned_cols=122  Identities=12%  Similarity=0.096  Sum_probs=104.8

Q ss_pred             CchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcCC
Q psy14896         29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDG  108 (813)
Q Consensus        29 Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~dg  108 (813)
                      +...+..|+++||+|+... ++|.+|+..|+.+||+||+|+|++|++||..++....  ..+||||.+...++.|.|.||
T Consensus        27 ~~~~~~~~~~~Cy~~~~~~-~tw~~A~~~C~~~g~~La~i~s~~e~~~l~~~~~~~~--~~~WIGl~~~~~~~~w~W~dg  103 (148)
T 3pbf_A           27 LQGSMLSVGDKVFSTNGQS-VNFDTIKEMCTRAGGNIAVPRTPEENEAIASIAKKYN--NYVYLGMIEDQTPGDFHYLDG  103 (148)
T ss_dssp             HTTSCEEETTEEEEEEEEE-ECHHHHHHHHHHTTCEECCCCSHHHHHHHHHHHHHHT--SCEEEEEEECSSTTCEEETTS
T ss_pred             HHhcceeeCCEEEEEcCCc-cCHHHHHHHHhhcCCEEeeeCCHHHHHHHHHHHHhCC--CCEEEEeEecCCCCceEeCCC
Confidence            4455678999999999984 9999999999999999999999999999999986542  578999999888899999999


Q ss_pred             CCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeee
Q psy14896        109 TNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEA  159 (813)
Q Consensus       109 s~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~  159 (813)
                      +++.| .+|..++|++...++|+.|... +    .|.+..|.....|+|+.
T Consensus       104 ~~~~~-~~W~~~~P~~~~~~~Cv~~~~~-g----~W~~~~C~~~~~fICe~  148 (148)
T 3pbf_A          104 ASVSY-TNWYPGEPRGQGKEKCVEMYTD-G----TWNDRGCLQYRLAVCEF  148 (148)
T ss_dssp             CBCCS-CCBCTTCCCSTTSCCEEEECTT-S----CEEEECSCSCEEEEEEC
T ss_pred             CCccc-CCcCCCccCcCCCCCceEECCC-C----cEecCCCCCCeeEeeeC
Confidence            99987 6777779987667899998652 2    45599999999999973

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.83  E-value=1.6e-19  Score=174.87  Aligned_cols=186  Identities=15%  Similarity=0.178  Sum_probs=129.2

Q ss_pred             CCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccc---------cccccCCCccEEe-eCCeEEEcCCcc
Q psy14896        196 PTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVA---------NLIDPLSDKRFTL-SGGNLIINDPRQ  265 (813)
Q Consensus       196 p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~---------~~~~~~~~~~~~~-~~~~l~i~~~~~  265 (813)
                      |....+.+|     ++++|.|.+.+.|.+.|.|||++........         .........++.+ .+++|.|.+. +
T Consensus         6 ~~~~~v~~G-----~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v-~   79 (208)
T 3r4d_A            6 AVPPQVAED-----NNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMI-T   79 (208)
T ss_dssp             EESSEEETT-----CCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSC-C
T ss_pred             CccceeecC-----CcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccc-c
Confidence            334555555     7799999998889999999998643221100         0111112334433 3678988885 8


Q ss_pred             ccCCeeEEEEeecCceeeEeeeeEEeeeeecc-cccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCcc
Q psy14896        266 VEDRGSYHCKASNKFGSIISESVQLAFGFIGE-FNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKR  344 (813)
Q Consensus       266 ~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~-~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~  344 (813)
                      .+|+|.|+|.+.|..+...+..+.|.|..++. +.+...+..+.+|+.++|.|.+ .+.| +.+.|++++.++  ....+
T Consensus        80 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~g~~v~l~C~~-~~~p-p~i~W~~~g~~l--~~~~~  155 (208)
T 3r4d_A           80 MKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLS-NDIG-ANIQWLFNSQSL--QLTER  155 (208)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSSCCTTCCEEEEEEC-SCTT-CEEEEEETTEEC--CCCSS
T ss_pred             ccCCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCceEeeCCCEEEEEEC-CCCC-CceEEEECCEeC--CCCCC
Confidence            99999999999998654446778888866533 2233223338889999999996 4555 799999999874  34455


Q ss_pred             EEEccC-ccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCc
Q psy14896        345 VFVSYD-GALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSN  393 (813)
Q Consensus       345 ~~~~~~-~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~  393 (813)
                      +.+..+ ++|.|.++..+|+|.|+|.|.|..|..  .+..+.|.|..++.
T Consensus       156 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~--~s~~~~l~v~~~~~  203 (208)
T 3r4d_A          156 MTLSQNNSILRIDPIKREDAGEYQCEISNPVSVR--RSNSIKLDIIFDPH  203 (208)
T ss_dssp             EEEETTTTEEEESSCCGGGCEEEEEEEECTTCCE--ECCCEEECCC----
T ss_pred             eEEcCCCCEEEEeccCHHhCeEEEEEEecCCCcc--cCCceeeeEEeCCc
Confidence            555554 689999999999999999999998853  45568888766543

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.83  E-value=4.8e-20  Score=177.38  Aligned_cols=176  Identities=16%  Similarity=0.272  Sum_probs=127.8

Q ss_pred             eCCCceeecCCCccccccEEEEee-eccCCC-CeEEEeecccccccccccccccCCCccEE-eeCCeEEEcCCccccCCe
Q psy14896        194 KQPTDVVFDLSKRSILNDITLSCY-AGGYPN-PSYEWFKEDYVQDRLVANLIDPLSDKRFT-LSGGNLIINDPRQVEDRG  270 (813)
Q Consensus       194 ~~p~~~~v~~g~~~~g~~v~l~C~-~~g~P~-p~v~W~k~g~~l~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~~d~G  270 (813)
                      ..+..+.+.+|     +++.|.|. +.+.|. +.+.|+|++..+..       .....+.. ..+++|.|.+. +.+|+|
T Consensus        13 ~~~~~~~v~~G-----~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~-------~~~~~~~~~~~~~~L~i~~v-~~~d~G   79 (201)
T 3s97_C           13 EERPEVRVKEG-----KGMVLLCDPPYHFPDDLSYRWLLNEFPVFI-------TMDKRRFVSQTNGNLYIANV-EASDKG   79 (201)
T ss_dssp             SCCCCEEEETT-----CCEEECCCCCSEESSCCEEEEEESSTTCBC-------CCSSSEEECTTTCCEEESSC-CGGGCE
T ss_pred             CCCceEEEECC-----CCEEEeccccccCCCceEEEEEECCceeee-------eeCCCeEEEcCCCeEEECcC-CcccCe
Confidence            34567777777     66999999 889998 99999999986521       11122222 23677888885 899999


Q ss_pred             eEEEEeecCceeeEe--eeeEEeee-------eecccccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccC
Q psy14896        271 SYHCKASNKFGSIIS--ESVQLAFG-------FIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEE  341 (813)
Q Consensus       271 ~Y~C~a~n~~g~~~s--~~~~l~v~-------~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~  341 (813)
                      .|+|.|.|..+....  ..+.+.+.       .+|.+........+.+|+.++|.|.+ .|.|.+.+.|++++.++  ..
T Consensus        80 ~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~v~W~~~~~~~--~~  156 (201)
T 3s97_C           80 NYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFA-LGNPVPDIRWRKVLEPM--PS  156 (201)
T ss_dssp             EEEEEEEEGGGTEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEE-EEESCCEEEEEETTBCC--CT
T ss_pred             EEEEEEEecCCCcchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEc-cCCCCCceEEEeCCCcC--CC
Confidence            999999997665432  23333332       34445555557778899999999996 77899999999999864  22


Q ss_pred             CccEEEccCccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEc
Q psy14896        342 DKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF  389 (813)
Q Consensus       342 ~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~  389 (813)
                      . ......++.|.|.++..+|+|.|+|.|.|..|....   .+.|.|.
T Consensus       157 ~-~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~---~~~l~V~  200 (201)
T 3s97_C          157 T-AEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKH---QARIYVQ  200 (201)
T ss_dssp             T-CEEETTTTEEEECSCCGGGCEEEEEEEEETTEEEEE---EEEEEEE
T ss_pred             c-eeecCCCCEEEEccCChhhCEEEEEEEEecCCceee---eEEEEEe
Confidence            2 223345678999999999999999999998876433   3566653

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.82  E-value=1.7e-20  Score=187.83  Aligned_cols=253  Identities=14%  Similarity=0.121  Sum_probs=104.1

Q ss_pred             ccccCeEEEEEeeccCCCc-EEEeeccccccceeccccCCCCCceEEeeC---CeEEEeCCCCCCCCceEEEEEEcCcee
Q psy14896        480 SILNDITLSCYAGGYPNPS-YEWFKEDYVQDRLVANLIDPLSDKRFTLSG---GNLIINDPRQVEDRGSYHCKASNKFGS  555 (813)
Q Consensus       480 ~~g~~~~l~C~~~g~p~~~-v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~~d~G~Y~C~a~n~~g~  555 (813)
                      ..|+.+.|.|.+.. +.|. +.|.-.-.              .......+   ..+.+.++ ..  .|.|+|.+.. .|.
T Consensus        12 ~~G~sv~l~Cs~~c-~~p~~~~~~t~l~--------------~~~~~~~g~~~~~~~l~~v-~~--~~~y~C~~~~-~~~   72 (291)
T 1mq8_A           12 PRGGSVLVTCSTSC-DQPKLLGIETPLP--------------KKELLLPGNNRKVYELSNV-QE--DSQPMCYSNC-PDG   72 (291)
T ss_dssp             CTTCEEEEEEEECC-SSCSEEEEECSSC--------------CCCCCCSCSSEEEEEEESC-CS--CCCCEEEEEC-SSC
T ss_pred             cCCCeEEEEEeCCC-CCCccceEEecCC--------------CcccccCCCceEEEEEEec-cc--CCeEEEEEEc-CCc
Confidence            78999999999974 5554 88853210              00000011   14677775 43  3579999964 445


Q ss_pred             EEeecEEEEEeeccc-ccccCCCceeccCCCceEEeCCCCCCCcc--EEEEccCCCCCcccCCCeEEEeeCccEEEEeec
Q psy14896        556 IISESVQLAFGFIGE-FNLKRAPEIGNQNWGKAMFCDPPTNYPGV--NYYWARDYFPNFVEEDKRVFVSYDGALYFSALE  632 (813)
Q Consensus       556 ~~s~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~~p~~--~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~  632 (813)
                      .....+.|.|..+|. +.+...+..+.+|+.++|+|.+..+.|..  +|+|||++.++....  ........+|.+....
T Consensus        73 ~~~~~v~l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~--~~~~~~~~~l~~~~~~  150 (291)
T 1mq8_A           73 QSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREP--AVGEPAEVTTTVLVRR  150 (291)
T ss_dssp             EEEEECEEEECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEE--CCBTTEEEEEECCCSS
T ss_pred             cEEEEEEEEEecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeeccc--CCCCCceEEEEeeeee
Confidence            556667888887775 44444556688899999999997777765  699999997532111  0000112346666667


Q ss_pred             ccCCeeEEEEEEeeecCcc-----ccCceeeEEEccCCCc-cccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCC---e
Q psy14896        633 QIDAGNYSCNVQSKVSDTG-----RNGPFFPLKVFPHSNF-QQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVP---S  703 (813)
Q Consensus       633 ~~d~G~Y~C~a~n~~g~~~-----~~~~~~~l~v~~~p~~-~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p---~  703 (813)
                      .+|.+.|+|+|.|..+..+     ..+....|.|.++|.. ..+..        +..+.+|+.++|+|.+.|.|++   .
T Consensus       151 ~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~--------p~~l~eG~~v~l~C~~~g~~P~~~~~  222 (291)
T 1mq8_A          151 DHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVS--------PRVLEVDTQGTVVCSLDGLFPVSEAQ  222 (291)
T ss_dssp             SCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC----------------------------------------------
T ss_pred             ccCCceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecC--------CcCccCCCeEEEEEEcCCCCCCcccE
Confidence            7777799999999876421     2344567888887643 22211        1256899999999999998664   6


Q ss_pred             EEEEeCCcccCCCceeeecceEEEECCC---CCC--CCEEEEEEEEcCCCceEEEEEEEEEcCCc
Q psy14896        704 YNWTRRGSPLPRNAYFENFNRILTIPNV---KVE--DQGEYICRASNDRSALESSVTISIQAEPN  763 (813)
Q Consensus       704 i~W~k~g~~l~~~~~~~~~~~~L~i~~v---~~~--d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~  763 (813)
                      |+|+++|+.+.......  +..+++...   ..+  +.+.|+|.|.|+....++...|.|...|.
T Consensus       223 v~w~~~g~~l~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~~~~~  285 (291)
T 1mq8_A          223 VHLALGDQRLNPTVTYG--NDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPA  285 (291)
T ss_dssp             -----------------------------------------------------------------
T ss_pred             EEEEECCEecCceeeec--CCeEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEEEEEEcCCC
Confidence            99999999987643222  233444333   343  46788888888665677888899886443

>1h8u_A MBP, eosinophil granule major basic protein 1; lectin, eosinophil granule protein, EMBP; 1.8A {Homo sapiens} SCOP: d.169.1.1 PDB: 2brs_A*

Probab=99.82  E-value=2.3e-20  Score=161.14  Aligned_cols=113  Identities=19%  Similarity=0.251  Sum_probs=94.8

Q ss_pred             eE-EEEecCCcCCHHHHHhHccc-CCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEecc--CCCCCeEEcCCCCCCcc
Q psy14896         39 SC-YRFVKSPLKTRNDAKLNCKS-LDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQ--QSPNLWVNEDGTNLNEL  114 (813)
Q Consensus        39 ~C-y~~~~~~~~~~~~a~~~C~~-~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~--~~~~~~~W~dgs~~~~~  114 (813)
                      +| |+|+... ++|.+|+..|+. +||+||+|+|++|++||..++... ....+||||.+.  ..++.|.|.||++++| 
T Consensus         1 ~C~Y~~~~~~-~tw~~A~~~C~~~~g~~La~i~s~~e~~~l~~~~~~~-~~~~~WIGl~~~~~~~~~~~~W~dg~~~~y-   77 (117)
T 1h8u_A            1 TCRYLLVRSL-QTFSQAWFTCRRCYRGNLVSIHNFNINYRIQCSVSAL-NQGQVWIGGRITGSGRCRRFQWVDGSRWNF-   77 (117)
T ss_dssp             --CEEEEEEE-ECHHHHHHHHHHHHSSEECCCCSHHHHHHHHHHHTTC-SSSEEEEEEEEECSSSCCEEEETTCCCCCC-
T ss_pred             CeEEEEeCCc-cCHHHHHHHhccCCCCeEEeecCHHHHHHHHHHHhcc-CCCCEEEcccccCCCCCCccEeCCCCcCCc-
Confidence            59 9999985 999999999999 999999999999999999998543 245799999875  4678999999999987 


Q ss_pred             ccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeee
Q psy14896        115 DAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEA  159 (813)
Q Consensus       115 ~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~  159 (813)
                      .+|..++|++ ..++|+.|....+  .  |.+..|.....|+|+.
T Consensus        78 ~~W~~~~P~~-~~~~C~~~~~~~g--~--W~~~~C~~~~~fiCe~  117 (117)
T 1h8u_A           78 AYWAAHQPWS-RGGHCVALCTRGG--Y--WRRAHCLRRLPFICSY  117 (117)
T ss_dssp             CCBCSSSCCT-TSCSEEEEETTTT--C--EEEECTTSCEEEEEEC
T ss_pred             cCcCCCCCCC-CCCCCeEEECCCC--c--CCCCCCCCCcceeEeC
Confidence            6777778887 4689999976533  3  5599999999999974

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.82  E-value=5.9e-20  Score=171.68  Aligned_cols=159  Identities=16%  Similarity=0.152  Sum_probs=118.7

Q ss_pred             ceeccCCCceEEeCC-CCCCCccEEEEcc--CCCCCcc--------cCCCeEEEeeCccEEEEeecccCCeeEEEEEEee
Q psy14896        578 EIGNQNWGKAMFCDP-PTNYPGVNYYWAR--DYFPNFV--------EEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSK  646 (813)
Q Consensus       578 ~~~~~g~~~~l~C~~-~~~~p~~~v~W~k--~~~~~~~--------~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~  646 (813)
                      ....+|+.++|.|.. +.+.+.+.|.|+|  ++.++..        ..+.|+.+..+|+|.|.+++.+|+|.|+|.|.|.
T Consensus         9 v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~~n~   88 (182)
T 1hnf_A            9 TWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDT   88 (182)
T ss_dssp             EEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEEEEEET
T ss_pred             EEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCEEEEEEEEeC
Confidence            345779999999954 2356788999999  8765311        3467888889999999999999999999999998


Q ss_pred             ecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEE
Q psy14896        647 VSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRIL  726 (813)
Q Consensus       647 ~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L  726 (813)
                      .|.... ...+.|.|..+...+.+.             ..+..++|.|.+.+.|.|.|+|+++|..| ..     ....|
T Consensus        89 ~g~~~~-~~~~~L~V~~~~~~P~i~-------------~~~~~v~L~C~~~~~p~~~~~W~~~g~~l-~~-----~~~~i  148 (182)
T 1hnf_A           89 KGKNVL-EKIFDLKIQERVSKPKIS-------------WTCINTTLTCEVMNGTDPELNLYQDGKHL-KL-----SQRVI  148 (182)
T ss_dssp             TSCEEE-EEEEEEEEECCCCCCEEE-------------EETTTTEEEEECSSCSSCEEEEEESSCEE-EE-----ESSCE
T ss_pred             CCceeE-EEEEEEEEcCcCCCCEEE-------------EccCcEEEEeEccCCCCCEEEEEECCEEC-CC-----CCcEE
Confidence            775322 234667887643221111             12337899999999999999999999988 21     23345


Q ss_pred             EECCCCCCCCEEEEEEEEcCCCceEEEEEEE
Q psy14896        727 TIPNVKVEDQGEYICRASNDRSALESSVTIS  757 (813)
Q Consensus       727 ~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~  757 (813)
                      .+.. ..+|+|.|+|.|.|.+|..++...+.
T Consensus       149 ~~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~~  178 (182)
T 1hnf_A          149 THKW-TTSLSAKFKCTAGNKVSKESSVEPVS  178 (182)
T ss_dssp             EEEC-CSCEEEEEEEEEECSSCEEEEEEEEE
T ss_pred             EEec-ccCCCcEEEEEEEeCCCCcEEcceec
Confidence            5433 57899999999999999988877664

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.82  E-value=2.5e-20  Score=176.35  Aligned_cols=140  Identities=14%  Similarity=0.204  Sum_probs=101.9

Q ss_pred             cccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeeee
Q psy14896        209 LNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESV  288 (813)
Q Consensus       209 g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~  288 (813)
                      |++++|.|.+.+ |. .|+|+|||..|..         .      .+++|.|.+.++.+|+|.|+|.|.|..|.. +..+
T Consensus        14 G~~v~L~C~~~~-~~-~i~W~k~g~~l~~---------~------~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~-~~~~   75 (186)
T 1jbj_A           14 GTSVELTCPLDS-DE-NLKWEKNGQELPQ---------K------HDKHLVLQDFSEVEDSGYYVCYTPASNKNT-YLYL   75 (186)
T ss_dssp             TTEEEEECSSCC-CT-TCEEEETTEEECS---------C------CCSEEEEESCCTTTSCEEEEEECSSCCCCC-CEEE
T ss_pred             CcEEEEEEeCCC-CC-ceEEEECCEECCC---------C------CCCEEEECCCCccccCEEEEEEEEeCCCcE-EEEE
Confidence            478999999988 54 4999999987621         1      255788888238999999999999998873 4444


Q ss_pred             EEeeeeeccccc----------------C--C----CC---ceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCc
Q psy14896        289 QLAFGFIGEFNL----------------K--R----AP---EIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDK  343 (813)
Q Consensus       289 ~l~v~~~~~~~~----------------~--~----~~---~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~  343 (813)
                      .+.|........                .  .    ..   ..+.+|+.++|.|.+    |.|.++|+|||.++....  
T Consensus        76 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~----p~p~i~W~k~g~~i~~~~--  149 (186)
T 1jbj_A           76 KARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL----TDKTIKWLKDGSIISPLN--  149 (186)
T ss_dssp             CCCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS----SCSCEEEEETTEECCCSS--
T ss_pred             EEEEecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC----CCCeEEEEECCEECcccC--
Confidence            444432211110                0  0    01   123388889999996    889999999998853211  


Q ss_pred             cEEEccCccEEEeeeeecCCeeeEEEEeeeccc
Q psy14896        344 RVFVSYDGALYFSALEQIDAGNYSCNVQSKVSD  376 (813)
Q Consensus       344 ~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~  376 (813)
                          ...++|.|.++..+|+|.|+|.|.|..|.
T Consensus       150 ----~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~  178 (186)
T 1jbj_A          150 ----ATKNTWNLGNNAKDPRGTYQCQGAKETSN  178 (186)
T ss_dssp             ----CCSSCCEEEETTSCCEEEEEEEESSCEEE
T ss_pred             ----CCcceEEECCCCcCcCEEEEEEEEcCcCC
Confidence                14568999999999999999999999875

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.82  E-value=2.4e-20  Score=183.69  Aligned_cols=183  Identities=14%  Similarity=0.118  Sum_probs=125.1

Q ss_pred             ccccccCCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEEEEeeec
Q psy14896        569 GEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVS  648 (813)
Q Consensus       569 p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  648 (813)
                      |.+...+.. .+.+|+.++|.|.+ .+ +...+.|+|+|..+............+++|.|.+++.+|+|.|+|.+.|..+
T Consensus         8 P~i~~~P~~-~v~~G~~VtL~C~~-~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~   84 (242)
T 1p6f_A            8 PFIWAEPHF-MVPKEKQVTICCQG-NY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGEL   84 (242)
T ss_dssp             CEEEEESCS-EEETTCCEEEEEEC-CT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             CEEEeeCCC-ccCCCCcEEEEEee-CC-CCcEEEEEECCCccccccccccCCcceeEEEecCCCcccCeEEEEEEecCCc
Confidence            334343444 67889999999998 33 4578999999865321111111112345799999999999999999988644


Q ss_pred             CccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEE
Q psy14896        649 DTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTI  728 (813)
Q Consensus       649 ~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i  728 (813)
                      ... .+..+.|.|........+...     . ...+.+|++|+|.|.+.+.+ +.+.|+|+|..+............|.|
T Consensus        85 ~s~-~S~~~~L~V~~~~~~P~i~~~-----p-~~~v~~G~~vtL~C~~~~~~-~~~~w~k~g~~~~~~~~~~~~~~~l~I  156 (242)
T 1p6f_A           85 WSE-PSNLLDLVVTEMYDTPTLSVH-----P-GPEVISGEKVTFYCRLDTAT-SMFLLLKEGRSSHVQRGYGKVQAEFPL  156 (242)
T ss_dssp             ECC-CCCCEEEEEECCSCCCEEEEE-----S-CSEEETTCEEEEEEECTTSC-SEEEEEECSSSCEEEEEECSSEEEEEE
T ss_pred             ccc-CCcceEEEeecccCCCceEcc-----C-CCccCCCCcEEEEEecCCCC-CEEEEEECCCccCccccCCCceEEEEe
Confidence            322 233466777643211111111     1 13578999999999998754 699999999877542223344678999


Q ss_pred             CCCCCCCCEEEEEEEEcCC---CceEEEEEEEEEcCC
Q psy14896        729 PNVKVEDQGEYICRASNDR---SALESSVTISIQAEP  762 (813)
Q Consensus       729 ~~v~~~d~G~Y~C~a~N~~---G~~~~~~~l~V~~~P  762 (813)
                      .+++.+|+|.|+|.|.|..   ...+..+.|.|.+++
T Consensus       157 ~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~~  193 (242)
T 1p6f_A          157 GPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGDI  193 (242)
T ss_dssp             EECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC--
T ss_pred             CCCccccCEEEEEEEECCCCcccCCCCCEEEEEeccC
Confidence            9999999999999999974   345678899998753

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.82  E-value=4.4e-20  Score=181.27  Aligned_cols=172  Identities=17%  Similarity=0.238  Sum_probs=114.2

Q ss_pred             CCceeccCCCceEEeCCCCCCCc---cEEEEccCCCCCcc---------------cCCCeEEEee------CccEEEEee
Q psy14896        576 APEIGNQNWGKAMFCDPPTNYPG---VNYYWARDYFPNFV---------------EEDKRVFVSY------DGALYFSAL  631 (813)
Q Consensus       576 ~~~~~~~g~~~~l~C~~~~~~p~---~~v~W~k~~~~~~~---------------~~~~~~~~~~------~~~L~i~~~  631 (813)
                      .+..+.+|++++|.|.+ .+.+.   ..|+|+|++....+               ....|.....      +.+|+|.++
T Consensus        12 ~pV~v~~G~~v~L~C~v-~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v   90 (226)
T 4f80_A           12 GPILAMVGEDADLPCHL-FPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNV   90 (226)
T ss_dssp             SCEEEETTSCEEEEEEE-ESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSC
T ss_pred             CCEEEEcCCcEEEEEEE-ECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeC
Confidence            45567899999999998 44443   37999998753211               0112233222      236999999


Q ss_pred             cccCCeeEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecC-CCCCeEEEEeCC
Q psy14896        632 EQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFG-YPVPSYNWTRRG  710 (813)
Q Consensus       632 ~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g-~P~p~i~W~k~g  710 (813)
                      +.+|+|.|+|.|.|..|....   .+.+.+...+..          ......+.+|+.+.|.|.+.| .|.|.|+|+|++
T Consensus        91 ~~~D~G~Y~C~a~n~~~~~~~---~v~~~~~~~~~~----------~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~  157 (226)
T 4f80_A           91 TASDSGKYLCYFQDGDFYEKA---LVELKVAALGSD----------LHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNK  157 (226)
T ss_dssp             CGGGCEEEEEEEEETTEEEEE---EEEEEEEBCCCC----------CEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTT
T ss_pred             chHHCeeEEEEEECCCcEEEE---EEEEeeccceec----------ccceeeeccCCceeeEEEeccCCCCCEEEEEECC
Confidence            999999999999998765322   233333322211          122245688999999999998 599999999976


Q ss_pred             cc-cCCCce--eeecc---eEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcC
Q psy14896        711 SP-LPRNAY--FENFN---RILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAE  761 (813)
Q Consensus       711 ~~-l~~~~~--~~~~~---~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~  761 (813)
                      .. +.....  ....+   ..+.+..++.+|+|.|+|+|.|.+|..++++.|.|.+|
T Consensus       158 ~~~~~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~ep  214 (226)
T 4f80_A          158 GENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIADP  214 (226)
T ss_dssp             SCBCCCEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCCTT
T ss_pred             ceEcCCCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECCC
Confidence            54 433321  11122   23455567889999999999999999999999999753

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.82  E-value=6.4e-20  Score=178.97  Aligned_cols=173  Identities=17%  Similarity=0.183  Sum_probs=124.4

Q ss_pred             CceeccCCCceEEeCCCCCCCcc---EEEEccCCCCCccc----------------CCCeEEEe------eCccEEEEee
Q psy14896        577 PEIGNQNWGKAMFCDPPTNYPGV---NYYWARDYFPNFVE----------------EDKRVFVS------YDGALYFSAL  631 (813)
Q Consensus       577 ~~~~~~g~~~~l~C~~~~~~p~~---~v~W~k~~~~~~~~----------------~~~~~~~~------~~~~L~i~~~  631 (813)
                      ...+.+|+.++|.|.+ .+.|.+   .|+|+|++.+....                ...++...      .+++|.|.++
T Consensus         8 ~vtv~~G~~v~L~C~v-~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v   86 (218)
T 4frw_A            8 VVTVVLGQDAKLPCFY-RGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNA   86 (218)
T ss_dssp             EEEEETTSCEEECCEE-CCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESSC
T ss_pred             eEEEEcCCCEEEEEEE-EcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEeec
Confidence            3456789999999998 566654   48999987653211                01122211      2346999999


Q ss_pred             cccCCeeEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCc
Q psy14896        632 EQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGS  711 (813)
Q Consensus       632 ~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~  711 (813)
                      +.+|+|.|.|.+.|..+.....  ...+.+..++.....       ......+..|+.+.|.|.+.|.|+|.|+|+|++.
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~--~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~  157 (218)
T 4frw_A           87 VQADEGEYECRVSTFPAGSFQA--RLRLRVLVPPLPSLN-------PGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVK  157 (218)
T ss_dssp             CGGGCEEEEEEEEEETTEEEEE--EEEEEEEBCCCCEEE-------ECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSC
T ss_pred             cHHHCCceeEEEEeccCceeee--EEEEEEeeeccceee-------eeeeeeeeeccccceeeeccCCcCceEEEEECCc
Confidence            9999999999999877643322  233444433322221       1222457889999999999999999999999999


Q ss_pred             ccCCCceeee-----cceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896        712 PLPRNAYFEN-----FNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ  759 (813)
Q Consensus       712 ~l~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  759 (813)
                      .+........     ..+.|+|.++..+|+|.|+|+|+|..|..+..++|.|.
T Consensus       158 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~  210 (218)
T 4frw_A          158 GTTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILH  210 (218)
T ss_dssp             CEEEEEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECC
T ss_pred             ccccCceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEE
Confidence            8865543322     24579999999999999999999999998877777764

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.82  E-value=1.4e-20  Score=183.08  Aligned_cols=171  Identities=14%  Similarity=0.201  Sum_probs=120.8

Q ss_pred             CceeccCCCceEEeCCCCCCCccEEEEccC--CCCCc----------ccCCCeEEEe---eCccEEEEeecccCCeeEEE
Q psy14896        577 PEIGNQNWGKAMFCDPPTNYPGVNYYWARD--YFPNF----------VEEDKRVFVS---YDGALYFSALEQIDAGNYSC  641 (813)
Q Consensus       577 ~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~--~~~~~----------~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C  641 (813)
                      ...+.+|+.++|.|.+ .+.|.+.|.|+|.  +....          .....++.+.   .+++|.|.+++.+|+|.|+|
T Consensus         9 ~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C   87 (213)
T 3mj8_L            9 LVSVALGQKATITCSG-DKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEADYYC   87 (213)
T ss_dssp             EEEEETTSCEEEEEEC-SSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             cEEEeCCCCEEEEEEc-CCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhCEEEEE
Confidence            5567889999999999 6889999999993  22111          0123455533   23469999999999999999


Q ss_pred             EEEeeecCccccCceeeEEEcc----CCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCC-CC-CeEEEEeCCcccCC
Q psy14896        642 NVQSKVSDTGRNGPFFPLKVFP----HSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGY-PV-PSYNWTRRGSPLPR  715 (813)
Q Consensus       642 ~a~n~~g~~~~~~~~~~l~v~~----~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~-P~-p~i~W~k~g~~l~~  715 (813)
                      .|.|..|........+.|.|..    +|.+...        .....+.+|+.++|.|.+.|. |+ +.|+|+|||.+|..
T Consensus        88 ~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~--------~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~  159 (213)
T 3mj8_L           88 QSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLF--------PPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQ  159 (213)
T ss_dssp             EEEETTTTEEEEBCCEEEEEECSCCBCCEEEEE--------CCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECT
T ss_pred             EeccCCcceeEEcCceEEEEeCCCCCCCeEEcc--------CCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCC
Confidence            9999877311223346777773    3332211        111334489999999999986 43 39999999999865


Q ss_pred             Ccee---------eecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEE
Q psy14896        716 NAYF---------ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI  756 (813)
Q Consensus       716 ~~~~---------~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l  756 (813)
                      +...         ....+.|+|.++..+|+|.|+|.|.|..|....++.+
T Consensus       160 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~  209 (213)
T 3mj8_L          160 GVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSLSP  209 (213)
T ss_dssp             TEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEECC
T ss_pred             CcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeeecc
Confidence            3211         1123569999999999999999999998776666543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.82  E-value=9.4e-21  Score=199.14  Aligned_cols=181  Identities=15%  Similarity=0.147  Sum_probs=137.0

Q ss_pred             CCCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCcccc
Q psy14896        188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE  267 (813)
Q Consensus       188 ~~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~  267 (813)
                      .+|.|...|.+..+.+|     +++.|.|.+.|.|.|.|.|++++..+....        .......+++|.|.+. +.+
T Consensus       157 ~~P~i~~~~~~~~v~~G-----~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~--------~~~~~~~~~~L~i~~v-~~~  222 (347)
T 2ifg_A          157 GVPTLKVQVPNASVDVG-----DDVLLRCQVEGRGLEQAGWILTELEQSATV--------MKSGGLPSLGLTLANV-TSD  222 (347)
T ss_dssp             CCCEEEEECCSSCCBTT-----CCEEEEEEEECSSCCCCCEEESCCCSSEEE--------CCCCCSSEEEEEEESC-CST
T ss_pred             CCCceeccCCceEEeCC-----CcEEEEEEEecCCCCEEEEEcCCceeeccc--------ccceecccceEEEeeC-ChH
Confidence            46889999988887777     679999999999999999999997643211        1111233567888885 899


Q ss_pred             CCe-eEEEEeecCceeeEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCccEE
Q psy14896        268 DRG-SYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVF  346 (813)
Q Consensus       268 d~G-~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~  346 (813)
                      |+| .|+|.|.|..|.. +..+.|.|..+|.+    ......+|+.++|.|.+ .|.|.|+|+|+|+|.++.........
T Consensus       223 D~G~~Y~C~a~n~~g~~-~~~~~l~V~~~P~i----~~~~~~~g~~v~l~C~~-~g~P~p~i~W~~~g~~l~~~~~~~~~  296 (347)
T 2ifg_A          223 LNRKNVTCWAENDVGRA-EVSVQVNVSFPASV----QLHTAVEMHHWCIPFSV-DGQPAPSLRWLFNGSVLNETSFIFTE  296 (347)
T ss_dssp             TTTCCEEECCEETTEEC-CEEECCCCBEEEEE----EECCCEESSSEEEEEEE-EEESCCEEEEEETTEECCCCSSEEEE
T ss_pred             HCCCeEEEEEEcCCCCE-EEEEEEEEcCCCee----eeccCccCceEEEEEEe-eecCCCcEEEEeCCEECCCCcceeeE
Confidence            999 9999999999987 67788888877775    12234578889999996 67799999999999886422222222


Q ss_pred             Ecc--------CccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccC
Q psy14896        347 VSY--------DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPH  391 (813)
Q Consensus       347 ~~~--------~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~  391 (813)
                      ...        +++|.|.+++.+|+|.|+|.|.|..|.....   +.|.|..+
T Consensus       297 ~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~---~~l~V~~~  346 (347)
T 2ifg_A          297 FLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASAS---IMAAFMDN  346 (347)
T ss_dssp             ECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEE---EEECSCCC
T ss_pred             EEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeE---EEEEecCC
Confidence            222        4579999999999999999999998864332   66666543

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.82  E-value=2.5e-20  Score=183.90  Aligned_cols=175  Identities=14%  Similarity=0.167  Sum_probs=127.9

Q ss_pred             CCceeccCCCceEEeCCCCCCCc-cEEEEccCCCCCc---cc--------CCCeEE----------EeeCccEEEEeecc
Q psy14896        576 APEIGNQNWGKAMFCDPPTNYPG-VNYYWARDYFPNF---VE--------EDKRVF----------VSYDGALYFSALEQ  633 (813)
Q Consensus       576 ~~~~~~~g~~~~l~C~~~~~~p~-~~v~W~k~~~~~~---~~--------~~~~~~----------~~~~~~L~i~~~~~  633 (813)
                      ....+.+|+.++|.|.+ .+.|. +.|.|+|++....   +.        -..++.          +..++.|.|.+++.
T Consensus         8 ~~~~v~~G~~v~L~C~~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v~~   86 (231)
T 2pet_A            8 PLVEVMRGKSVILDCTP-TGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQV   86 (231)
T ss_dssp             SEEEEETTCCEEECCCC-BSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSCCG
T ss_pred             CcEEEEcCCCEEEeccc-CCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcccCc
Confidence            34567889999999999 67774 8999998765421   00        023444          66677899999999


Q ss_pred             cCCeeEEEEEEeee-cCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeE-EEEEEe-cCCCCCeEEEEeCC
Q psy14896        634 IDAGNYSCNVQSKV-SDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKV-RLECVA-FGYPVPSYNWTRRG  710 (813)
Q Consensus       634 ~d~G~Y~C~a~n~~-g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v-~l~C~~-~g~P~p~i~W~k~g  710 (813)
                      +|+|.|+|.|.|.. |..   ...+.|.|..+|....+..+     .....+.+|+.+ +|.|.+ .|.|.|.|+|+|+|
T Consensus        87 ~D~G~Y~C~~~~~~~~~~---~~~~~l~V~~~p~~~~~~~~-----~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~  158 (231)
T 2pet_A           87 GDERDYVCVVRAGAAGTA---EATARLNVFAKPEATEVSPN-----KGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNG  158 (231)
T ss_dssp             GGCEEEEEEEECGGGCEE---EEEEEEEEEBCCCCCEEEEC-----CSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETT
T ss_pred             ccCceEEEEEEecCCCce---EEEEEEEEEecCCCcEEecC-----CcceeecCCCceEEEEEEeECcccCCEEEEEECC
Confidence            99999999999987 432   34578888888765443322     223557799988 999999 89999999999999


Q ss_pred             cccCCCc----eeeec-------------ceEEEECCCCCCCCEEEEEEEEc-----CCCc-eEEEEEEEEE
Q psy14896        711 SPLPRNA----YFENF-------------NRILTIPNVKVEDQGEYICRASN-----DRSA-LESSVTISIQ  759 (813)
Q Consensus       711 ~~l~~~~----~~~~~-------------~~~L~i~~v~~~d~G~Y~C~a~N-----~~G~-~~~~~~l~V~  759 (813)
                      .++....    ++...             .+.|.|.....+|+|.|+|.|.|     ..|. .+..+.|.|+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~~~~~~~~~~~s~~~~l~V~  230 (231)
T 2pet_A          159 QRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTLH  230 (231)
T ss_dssp             EECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEECGGGCEEEEECCCEECCCC
T ss_pred             ccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcCCcccccccccccceEEEEe
Confidence            9887654    21110             16689986666679999999999     4555 5566666654

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.82  E-value=1e-19  Score=176.81  Aligned_cols=163  Identities=15%  Similarity=0.205  Sum_probs=118.8

Q ss_pred             ccEEEEeeecc-CCCCeEEEeecccccccccccccccCCCccEE--eeCC--eEEEcCCccccCCeeEEEEeecCceeeE
Q psy14896        210 NDITLSCYAGG-YPNPSYEWFKEDYVQDRLVANLIDPLSDKRFT--LSGG--NLIINDPRQVEDRGSYHCKASNKFGSII  284 (813)
Q Consensus       210 ~~v~l~C~~~g-~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~--~~~~--~l~i~~~~~~~d~G~Y~C~a~n~~g~~~  284 (813)
                      +.+.|.|.+.+ .|.+.|.|||+|..+..          +.++.  ..++  +|.|.+. +.+|+|.|+|.|.|..|.. 
T Consensus        18 ~~~~l~C~~~~~~p~~~i~W~~~g~~i~~----------~~~~~~~~~~~~~~L~i~~v-~~~D~G~Y~C~~~n~~~~~-   85 (212)
T 2r15_A           18 EGIQLYSFVTYYVEDLKVNWSHNGSAIRY----------SDRVKTGVTGEQIWLQINEP-TPNDKGKYVMELFDGKTGH-   85 (212)
T ss_dssp             SEEEEEEEBSSCCSSCEEEEEETTEECCC----------CSSEEEEEETTEEEEEEESC-CGGGCEEEEEEEECSSCEE-
T ss_pred             ceEEEEEEEeccCCCceEEEEECCEEccC----------CCeEEEEEeCCEEEEEECCC-CcccCEEEEEEEecCCcce-
Confidence            55899999987 46899999999987632          22333  2333  3888885 8999999999999988876 


Q ss_pred             eeeeEEeeee--------------------ecccc-cCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCc
Q psy14896        285 SESVQLAFGF--------------------IGEFN-LKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDK  343 (813)
Q Consensus       285 s~~~~l~v~~--------------------~~~~~-~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~  343 (813)
                      ...+.|.|..                    .|.+. ..+....+.+|+.++|.|.+ .|.|.+.+.|+|++.++.  ...
T Consensus        86 ~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~-~g~p~p~v~W~~~~~~~~--~~~  162 (212)
T 2r15_A           86 QKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNV-WGDPPPEVSWLKNEKALA--QTD  162 (212)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEE-ECSSCCEEEEEETTEEEC--CCS
T ss_pred             EEEEEEEEeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEE-cCCCCceEEEEECCeECc--cCC
Confidence            4566665532                    12222 12334577889999999996 688999999999998853  333


Q ss_pred             cEEEccC----ccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEcc
Q psy14896        344 RVFVSYD----GALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFP  390 (813)
Q Consensus       344 ~~~~~~~----~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~  390 (813)
                      ++.+...    ..|.|.++..+|+|.|+|.|.|..|....   .+.|.|..
T Consensus       163 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~---~~~l~V~~  210 (212)
T 2r15_A          163 HCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETS---DFTVSVFI  210 (212)
T ss_dssp             SEEEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEE---EEEEEEEC
T ss_pred             CEEEEEcCCCEEEEEEcCcchHHCeEEEEEEEcCCCcEEE---EEEEEEEc
Confidence            4444332    28999999999999999999999886433   36666653

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.81  E-value=1.6e-19  Score=179.12  Aligned_cols=224  Identities=13%  Similarity=0.113  Sum_probs=124.5

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccC
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED  268 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d  268 (813)
                      +|.|...|. ..+.+|     ++|+|.|.+.+ +.+.+.|||+|..+.....   .  ........+++|.|.+. +.+|
T Consensus         7 kP~i~~~P~-~~V~~G-----~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~---~--~~~~~~~~~~~L~I~~v-~~~D   73 (257)
T 1b6u_A            7 KPSLLAHPG-PLVKSE-----ETVILQCWSDV-RFQHFLLHREGKFKDTLHL---I--GEHHDGVSKANFSIGPM-MQDL   73 (257)
T ss_dssp             CCEECCBSC-SEEESS-----CCEEEEEEESS-CCSEEEEEEESTTCEEEEE---E--CBCCTTCEEEEEEECSC-CTTT
T ss_pred             CCEEEEcCC-CEecCC-----CCEEEEEecCC-CCcEEEEEECCCCCCccee---e--eeccCCCceEEEEeecC-Cccc
Confidence            578888876 556666     77999999976 6789999999976521100   0  00000123456788775 8999


Q ss_pred             CeeEEEEeecCc----eeeEeeeeEEeeeee---cccccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccC
Q psy14896        269 RGSYHCKASNKF----GSIISESVQLAFGFI---GEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEE  341 (813)
Q Consensus       269 ~G~Y~C~a~n~~----g~~~s~~~~l~v~~~---~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~  341 (813)
                      +|.|+|.|.|..    ....+..+.|.|...   |.+...+. ..+.+|+.++|.|.+. +. .+.+.|+|||..+....
T Consensus        74 sG~Y~C~a~~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~-~~V~~G~~vtL~C~~~-~~-~~~~~w~k~g~~~~~~~  150 (257)
T 1b6u_A           74 AGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPG-PTVLAGESVTLSCSSR-SS-YDMYHLSREGEAHERRF  150 (257)
T ss_dssp             CEEEEEEEECSSCTTSCCCCCCCEEEEEECSSCCCEEECSSC-TTCBTTCEEEEEEECS-SC-CSEEEEEETTSSCEECC
T ss_pred             CEEEEEeEeccCCCccccccCCCEEEecccCCCCcceEccCC-CccCCCCEEEEEEeCC-CC-CcEEEEEECCcccCccc
Confidence            999999998643    233466778888653   22333333 4678899999999964 43 46999999998753321


Q ss_pred             CccEEE--ccCccEEEeeeeecCCeeeEEEEeeeccc--cCCCCCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcE
Q psy14896        342 DKRVFV--SYDGALYFSALEQIDAGNYSCNVQSKVSD--TGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKV  417 (813)
Q Consensus       342 ~~~~~~--~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~--~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~  417 (813)
                      ......  ..++.|.|.+++  |+|.|+|.|.|....  ....+..+.|.|...|...  .++     ........|..+
T Consensus       151 ~~~~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~~~--~p~-----~~~~~~~~g~~~  221 (257)
T 1b6u_A          151 SAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNS--WPS-----PTEPSSETGNPR  221 (257)
T ss_dssp             BCBCCSSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC-------------------------
T ss_pred             ccccccCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCCCC--CCC-----CcccCccCCCeE
Confidence            111111  124589999998  999999999976432  2344667888888765432  111     111235679999


Q ss_pred             EEEEEEeecCCCeeeEeecCC
Q psy14896        418 RLECVAFGYPVPSYNWTRRGS  438 (813)
Q Consensus       418 ~l~C~~~g~p~p~i~W~~~~~  438 (813)
                      .|.|.+ |.+.+.|.|...+-
T Consensus       222 ~l~~~~-~~~~~~~~~~~~~~  241 (257)
T 1b6u_A          222 HLHAAA-EQKLISEEDLNLDL  241 (257)
T ss_dssp             ---------------------
T ss_pred             EEEEEE-cchHHHHHHhhhhh
Confidence            999766 55777899987654

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.81  E-value=2e-19  Score=176.50  Aligned_cols=179  Identities=13%  Similarity=0.135  Sum_probs=116.8

Q ss_pred             eeecCCCccccccEEEEeeeccCCCC---eEEEeeccccccc-----cc--ccccccCCCccEEee-------CCeEEEc
Q psy14896        199 VVFDLSKRSILNDITLSCYAGGYPNP---SYEWFKEDYVQDR-----LV--ANLIDPLSDKRFTLS-------GGNLIIN  261 (813)
Q Consensus       199 ~~v~~g~~~~g~~v~l~C~~~g~P~p---~v~W~k~g~~l~~-----~~--~~~~~~~~~~~~~~~-------~~~l~i~  261 (813)
                      +.+.+|     ++|+|.|.+.+.|.+   .|+|+|++....-     ..  ..........+....       +.+|.|.
T Consensus        14 V~v~~G-----~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~   88 (226)
T 4f80_A           14 ILAMVG-----EDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIH   88 (226)
T ss_dssp             EEEETT-----SCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEES
T ss_pred             EEEEcC-----CcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEe
Confidence            556566     779999999876655   6999998753210     00  000111112222221       2368888


Q ss_pred             CCccccCCeeEEEEeecCceeeEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccC
Q psy14896        262 DPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEE  341 (813)
Q Consensus       262 ~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~  341 (813)
                      +. +.+|+|.|+|.|.|..|..   ...+.+...+.+........+.+|..+.|.|.+..+.|.|+|+|+|++..+....
T Consensus        89 ~v-~~~D~G~Y~C~a~n~~~~~---~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~  164 (226)
T 4f80_A           89 NV-TASDSGKYLCYFQDGDFYE---KALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTV  164 (226)
T ss_dssp             SC-CGGGCEEEEEEEEETTEEE---EEEEEEEEEBCCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCE
T ss_pred             eC-chHHCeeEEEEEECCCcEE---EEEEEEeeccceecccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCC
Confidence            85 8999999999999998865   3445555555555555666778899999999976667999999999766543444


Q ss_pred             CccEEEccCcc---EEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEc
Q psy14896        342 DKRVFVSYDGA---LYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF  389 (813)
Q Consensus       342 ~~~~~~~~~~~---L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~  389 (813)
                      ...+....++.   +.+..++.+|+|.|+|.|.|..|.....   +.|.|.
T Consensus       165 ~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~---~~v~v~  212 (226)
T 4f80_A          165 EAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKT---ASISIA  212 (226)
T ss_dssp             ECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEE---EEECCC
T ss_pred             ceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEE---EEEEEC
Confidence            44455555664   3455778999999999999998864432   555553

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.81  E-value=1.1e-19  Score=181.71  Aligned_cols=184  Identities=17%  Similarity=0.111  Sum_probs=124.4

Q ss_pred             CCceeecCCCccccccEEEEeeecc---CCCCeEEEeecccccccccccc--------------------cccCCCccEE
Q psy14896        196 PTDVVFDLSKRSILNDITLSCYAGG---YPNPSYEWFKEDYVQDRLVANL--------------------IDPLSDKRFT  252 (813)
Q Consensus       196 p~~~~v~~g~~~~g~~v~l~C~~~g---~P~p~v~W~k~g~~l~~~~~~~--------------------~~~~~~~~~~  252 (813)
                      +..+.+.+|     ++++|.|.+.+   .|.+.|.|+|++..........                    .......+..
T Consensus         9 ~~~v~v~~G-----~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~   83 (250)
T 2fbo_J            9 HTEVEVHAG-----GTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRAS   83 (250)
T ss_dssp             CSEEEECTT-----SCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEE
T ss_pred             CCceEEecC-----CeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEE
Confidence            456777666     77999999987   7899999999986431000000                    0012233444


Q ss_pred             ee---CCeEEEcCCccccCCeeEEEEeecCceee----EeeeeEEeeeeec---ccccC-CCCceeecCCCeEEEecCCC
Q psy14896        253 LS---GGNLIINDPRQVEDRGSYHCKASNKFGSI----ISESVQLAFGFIG---EFNLK-RAPEIGNQNWGKAMFCDPPT  321 (813)
Q Consensus       253 ~~---~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~----~s~~~~l~v~~~~---~~~~~-~~~~~~~~~~~~~l~C~~~~  321 (813)
                      +.   +.+|.|.+. +.+|+|.|+|.|.|..+..    .+..+.|.|..++   .+.+. .....+.+|+.++|.|.+ .
T Consensus        84 ~~~~~~~~L~I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~-~  161 (250)
T 2fbo_J           84 VANLAAPTLRLTHV-HPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPC-T  161 (250)
T ss_dssp             CSCTTSCCEEECSC-CGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCE-E
T ss_pred             eccCCcceEEEeeC-ChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEe-c
Confidence            43   357888885 8999999999999977643    1446777776642   22222 223445569999999996 6


Q ss_pred             CCCcceEEEeeccccccccCC----------------------ccEEEccCccEEEeeeeecCCeeeEEEEeeeccccCC
Q psy14896        322 NYPGVNYYWARDYFPNFVEED----------------------KRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGR  379 (813)
Q Consensus       322 ~~p~~~v~W~k~~~~~~~~~~----------------------~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~  379 (813)
                      +.|.|.++|+|++.++.....                      .+......+.|.|.++..+|+|.|+|.|.|..|..+.
T Consensus       162 g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~  241 (250)
T 2fbo_J          162 DCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDA  241 (250)
T ss_dssp             SCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGGGE
T ss_pred             CCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccccCc
Confidence            778889999999987543221                      2222224468999999999999999999998775544


Q ss_pred             CCCceee
Q psy14896        380 NGPFFPL  386 (813)
Q Consensus       380 ~s~~~~l  386 (813)
                      ....+.|
T Consensus       242 ~~~~~~l  248 (250)
T 2fbo_J          242 DRSSTIL  248 (250)
T ss_dssp             EEEEEEE
T ss_pred             cceeEEE
Confidence            4333333

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.81  E-value=9.7e-20  Score=176.77  Aligned_cols=182  Identities=14%  Similarity=0.131  Sum_probs=120.5

Q ss_pred             eCCCceeecCCCccccccEEEEeeeccCCCCeEEEeec---ccccccccccccccCCCccEEe-eCCeEEEcCCccccCC
Q psy14896        194 KQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKE---DYVQDRLVANLIDPLSDKRFTL-SGGNLIINDPRQVEDR  269 (813)
Q Consensus       194 ~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~---g~~l~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~d~  269 (813)
                      .+|..+.+.+|.+   ++++|.|.+.+ |.+.+.|+|+   |..+          ..+.++.. .++.|.|.+. +.+|+
T Consensus        12 ~~p~~v~v~eG~~---~~v~L~C~~~~-p~~~v~w~~~~~~g~~~----------~~~~~~~~~~~~~l~I~~v-~~~D~   76 (213)
T 2x1w_L           12 DQHGVVYITENKN---KTVVIPCLGSI-SNLNVSLCARYPEKRFV----------PDGNRISWDSKKGFTIPSY-MISYA   76 (213)
T ss_dssp             --CEEEEECCSTT---CEEEECCCBSS-TTCCEEEEEETTTEEEC----------CCSSSCEEETTTEEEEEGG-GTTTC
T ss_pred             CCceEEEEecCCC---ccEEEeeccCC-CCcEEEEEhhcCCCccc----------cCCCcccccCCccEEEccC-ChhcC
Confidence            3457777766621   55999999987 8899999985   5433          12233333 3567888885 89999


Q ss_pred             eeEEEEeecCceeeEeeeeEEeeee--ecccccCCCCc-eeecCCCeEEEecCCCC-CCcceEEEeeccccccccCC--c
Q psy14896        270 GSYHCKASNKFGSIISESVQLAFGF--IGEFNLKRAPE-IGNQNWGKAMFCDPPTN-YPGVNYYWARDYFPNFVEED--K  343 (813)
Q Consensus       270 G~Y~C~a~n~~g~~~s~~~~l~v~~--~~~~~~~~~~~-~~~~~~~~~l~C~~~~~-~p~~~v~W~k~~~~~~~~~~--~  343 (813)
                      |.|+|.|.|..+...+..+.|.|..  +|.+.+..... .+.+|+.++|.|.+.+. .|.+.+.|++++..+.....  .
T Consensus        77 G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~  156 (213)
T 2x1w_L           77 GMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNR  156 (213)
T ss_dssp             SEEEEEEC----CEECCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEE
T ss_pred             ceEEEEEEECCeeEEEEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEecc
Confidence            9999999996666555557777743  33344444443 78899999999996422 33468999999987422110  0


Q ss_pred             cEE-------EccCccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCc
Q psy14896        344 RVF-------VSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSN  393 (813)
Q Consensus       344 ~~~-------~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~  393 (813)
                      +..       ....++|.|.+++.+|+|.|+|.|.|..|..   +..+.|.|..+|.
T Consensus       157 ~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~---~~~~~l~V~~~p~  210 (213)
T 2x1w_L          157 DLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTK---KNSTFVRVHEDPI  210 (213)
T ss_dssp             EECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEE---EEEEEEEEEC---
T ss_pred             ccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcE---EEEEEEEEecccc
Confidence            100       1113469999999999999999999998765   3347888876543

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.81  E-value=2.4e-20  Score=179.03  Aligned_cols=160  Identities=14%  Similarity=0.189  Sum_probs=111.0

Q ss_pred             eccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEEEEeeecCccccCceeeE
Q psy14896        580 GNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPL  659 (813)
Q Consensus       580 ~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l  659 (813)
                      +.+|+.++|.|.+    |.+.|+|+|+|.++...      ...+++|.|.+++.+|+|.|+|.+.+..      +..+.|
T Consensus        15 ~~~G~~v~L~C~~----p~~~i~W~k~g~~l~~~------~~~~~~L~i~~v~~~DsG~Y~C~~~~~~------s~~~~v   78 (204)
T 1sy6_A           15 YQEDGSVLLTCDA----EAKNITWFKDGKMIGFL------TEDKKKWNLGSNAKDPRGMYQCKGSQNK------SKPLQV   78 (204)
T ss_dssp             CCSSSEEEEEECS----CSSEEEEEETTEEEEEE------ESSCCCEEEEEGGGCCEEEEEEESSSSC------CCCEEE
T ss_pred             ecCCCeEEEEEcC----CCCEEEEEECCEECCCC------CCCCCeEEeCCCCcCCCEEEEEEecCCC------CeeEEE
Confidence            3578999999997    78899999998753211      1245689999999999999999975432      112445


Q ss_pred             EEccCCCc----------------------c-ccccCCCCCCCCCcCCC-CCCeEEEEEEecCCCCCeEEEEeCCcccCC
Q psy14896        660 KVFPHSNF----------------------Q-QLKFPNNFPKTFPEAPK-AGDKVRLECVAFGYPVPSYNWTRRGSPLPR  715 (813)
Q Consensus       660 ~v~~~p~~----------------------~-~~~~p~~~~~~~~~~~~-~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~  715 (813)
                      .+...+..                      . ....+... . .+..+. +|++++|.|.  |.|.|.|+|+|+|..+..
T Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~p~~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~  154 (204)
T 1sy6_A           79 YYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGIT-Q-TPYKVSISGTTVILTCP--QYPGSEILWQHNDKNIGG  154 (204)
T ss_dssp             EEEC-------------------------------------C-CCCEEEEETTEEEEECS--CCCSSCEEEEETTEEESC
T ss_pred             EEEEecccccccccccccccccccccccccccccccccee-c-CCceeeecCCcEEEEcC--CCCCCceEEEECCEECCC
Confidence            54410000                      0 00000000 0 112334 8999999998  889999999999998865


Q ss_pred             Cc---eeeecceEEEECCC-CCCCCEEEEEEEEcCCCc-eEEEEEEEEE
Q psy14896        716 NA---YFENFNRILTIPNV-KVEDQGEYICRASNDRSA-LESSVTISIQ  759 (813)
Q Consensus       716 ~~---~~~~~~~~L~i~~v-~~~d~G~Y~C~a~N~~G~-~~~~~~l~V~  759 (813)
                      ..   .+...++.|.|.++ +.+|+|.|+|.|.|..|. .+..+.|.|+
T Consensus       155 ~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~~  203 (204)
T 1sy6_A          155 DEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRAR  203 (204)
T ss_dssp             CTTCTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEEC
T ss_pred             ccCCceEecCCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEEe
Confidence            32   23334789999999 999999999999999997 3667776654

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.81  E-value=1.1e-19  Score=169.99  Aligned_cols=153  Identities=14%  Similarity=0.123  Sum_probs=108.8

Q ss_pred             ccccEEEEeeecc--CCCCeEEEeecccccccccccccccCCCccEEe-eCCeEEEcCCccccCCeeEEEEeecCceee-
Q psy14896        208 ILNDITLSCYAGG--YPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL-SGGNLIINDPRQVEDRGSYHCKASNKFGSI-  283 (813)
Q Consensus       208 ~g~~v~l~C~~~g--~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~-  283 (813)
                      +|++++|.|...+  .|.+.|.|||++..|..............++.+ .+++|.|.+. +.+|+|.|+|.|.|..|.. 
T Consensus        10 ~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v-~~~D~G~Y~C~~~n~~g~~~   88 (176)
T 1hng_A           10 LGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNL-TRDDSGTYNVTVYSTNGTRI   88 (176)
T ss_dssp             TTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSC-CGGGCEEEEEEEEETTCCEE
T ss_pred             cCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEccc-ccccCEEEEEEEEeCCCCEE
Confidence            4588999995433  567899999999765321111111122445554 5788999885 8999999999999998876 


Q ss_pred             EeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCccEEEccCccEEEeeeeecCC
Q psy14896        284 ISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDA  363 (813)
Q Consensus       284 ~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~  363 (813)
                      .+..+.|.|..++.     .+.....+..++|.|.+ .|.|.|+|+|+|||+++..          +..+.|.++..+|+
T Consensus        89 ~~~~~~l~V~~~~~-----~p~i~~~~~~v~L~C~~-~g~p~p~i~W~~~g~~l~~----------~~~~~i~~~~~~d~  152 (176)
T 1hng_A           89 LNKALDLRILEMVS-----KPMIYWECSNATLTCEV-LEGTDVELKLYQGKEHLRS----------LRQKTMSYQWTNLR  152 (176)
T ss_dssp             EEEEEEEEEECCCC-----CCEEEEETTTTEEEEEC-SSCSSCEEEEEETTEEEEE----------ESSSEEEEECSCCS
T ss_pred             EEEEEEEEEeCCCC-----CCEEEecCCcEEEEEEe-cCCCCcEEEEEECCEECCC----------CCcEEEEEEEccCC
Confidence            45667777765322     12233334468999995 6778899999999986422          22366778999999


Q ss_pred             eeeEEEEeeecccc
Q psy14896        364 GNYSCNVQSKVSDT  377 (813)
Q Consensus       364 G~Y~C~a~n~~g~~  377 (813)
                      |.|+|.|.|..|..
T Consensus       153 G~Y~C~a~N~~g~~  166 (176)
T 1hng_A          153 APFKCKAVNRVSQE  166 (176)
T ss_dssp             SCEEEEEEETTEEE
T ss_pred             eEEEEEEEecCCCc
Confidence            99999999998854

>1byf_A TC14, protein (polyandrocarpa lectin); C-type lectin, galactose-specific, sugar binding protein; 2.00A {Polyandrocarpa misakiensis} SCOP: d.169.1.1 PDB: 1tlg_A*

Probab=99.81  E-value=8e-20  Score=159.66  Aligned_cols=115  Identities=17%  Similarity=0.118  Sum_probs=96.9

Q ss_pred             CCeEEEEecCCcCCHHHHHhHcccCCCeEee--eCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCC--eEEcCCCCC-
Q psy14896         37 RDSCYRFVKSPLKTRNDAKLNCKSLDSDLAN--VNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNL--WVNEDGTNL-  111 (813)
Q Consensus        37 ~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~--i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~--~~W~dgs~~-  111 (813)
                      +++||+|+... ++|.+|+..|+.+||+||+  |++++|++||.++ .. .....+|||| +...++.  |.|.||+++ 
T Consensus         1 g~~Cy~~~~~~-~~w~~A~~~C~~~g~~La~~~i~s~~e~~~l~~~-~~-~~~~~~WIGl-~~~~~~~~~w~W~dg~~~~   76 (125)
T 1byf_A            1 MDYEILFSDET-MNYADAGTYCQSRGMALVSSAMRDSTMVKAILAF-TE-VKGHDYWVGA-DNLQDGAYNFLWNDGVSLP   76 (125)
T ss_dssp             -CEEEEEEEEE-ECHHHHHHHHHTTTCEESCGGGGSHHHHHHHHHH-HH-HHTCCEEEEE-ESTTTCTTCCEETTSCBCC
T ss_pred             CCeEEEEeCCC-CCHHHHHHHHHHcCCEeeecCCCCHHHHHHHHHh-cC-CCCCCEEEec-ccCCCCceeEEECCCCCCc
Confidence            47999999984 9999999999999999999  9999999999988 21 2346799999 8888899  999999999 


Q ss_pred             Cccc-cccCCCCCCc-ccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        112 NELD-AAFLPEPADN-VQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       112 ~~~~-~~~~~~p~~~-~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      .| . +|..++|++. +.++|+.|. ..   ...|.+..|.....|+|+..
T Consensus        77 ~~-~~~W~~~~P~~~~~~~~Cv~~~-~~---~~~W~d~~C~~~~~fICe~~  122 (125)
T 1byf_A           77 TD-SDLWSPNEPSNPQSWQLCVQIW-SK---YNLLDDVGCGGARRVICEKE  122 (125)
T ss_dssp             TT-CTTBCTTCSCSCTTSCCEEEEE-TT---TTEEEEECSCSCEEEEEEEE
T ss_pred             cc-ccCcCCCcCCCCCCCCCceEEE-CC---CCcEECcCCCCceeEEEeee
Confidence            66 6 7777799874 367999997 32   23566999999999999985

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.81  E-value=2.7e-19  Score=174.09  Aligned_cols=172  Identities=17%  Similarity=0.221  Sum_probs=121.0

Q ss_pred             CceeccCCCceEEeCCCCC------CCccEEEEccCCCCC----c-----------ccCCCeEEEee-----CccEEEEe
Q psy14896        577 PEIGNQNWGKAMFCDPPTN------YPGVNYYWARDYFPN----F-----------VEEDKRVFVSY-----DGALYFSA  630 (813)
Q Consensus       577 ~~~~~~g~~~~l~C~~~~~------~p~~~v~W~k~~~~~----~-----------~~~~~~~~~~~-----~~~L~i~~  630 (813)
                      ...+.+|+.++|.|.+...      .+.+.+.|+|++...    .           .....|+.+..     +++|.|.+
T Consensus         9 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~   88 (214)
T 2zg1_A            9 SVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGD   88 (214)
T ss_dssp             EEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEEECS
T ss_pred             EEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEEEcc
Confidence            4567889999999998422      257899999986521    0           11235666654     34699999


Q ss_pred             ecccCCeeEEEEEEeeecCc-cccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCC----CCCeEE
Q psy14896        631 LEQIDAGNYSCNVQSKVSDT-GRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGY----PVPSYN  705 (813)
Q Consensus       631 ~~~~d~G~Y~C~a~n~~g~~-~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~----P~p~i~  705 (813)
                      ++.+|+|.|.|.+.|..+.. ......+.|.|...+....+..|        ..+.+|+.++|.|.+.|.    |.|.|+
T Consensus        89 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~--------~~~~~G~~v~L~C~~~~~~~~~p~p~v~  160 (214)
T 2zg1_A           89 ARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFL--------EPLESGRPTRLSCSLPGSCEAGPPLTFS  160 (214)
T ss_dssp             CCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC----------CCCCTTCCEEEEEECTTCCSCSSCCEEE
T ss_pred             CCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecC--------ccccCCCeEEEEEEeccCCCCCCCceEE
Confidence            99999999999999875321 11123577888876543333222        236789999999999874    889999


Q ss_pred             EEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCc--eEEEEEEEE
Q psy14896        706 WTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSA--LESSVTISI  758 (813)
Q Consensus       706 W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~--~~~~~~l~V  758 (813)
                      |+|++..+....  ....+.|+|..+..+|+|.|+|.|.|..|.  .++++.|.|
T Consensus       161 W~~~~~~~~~~~--~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l~V  213 (214)
T 2zg1_A          161 WTGNALSPLDPE--TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV  213 (214)
T ss_dssp             EESSTTSSSCSS--CCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEECCC
T ss_pred             EeCCCCccCCCC--ceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEEEe
Confidence            999997654322  134678999999999999999999998754  455555554

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.81  E-value=9.1e-20  Score=175.38  Aligned_cols=170  Identities=14%  Similarity=0.220  Sum_probs=118.8

Q ss_pred             ceeccCCCceEEeCCCC---CCCccEEEEccCCCCCcccC----------CCeEEE--eeCccEEEEeecccCCeeEEEE
Q psy14896        578 EIGNQNWGKAMFCDPPT---NYPGVNYYWARDYFPNFVEE----------DKRVFV--SYDGALYFSALEQIDAGNYSCN  642 (813)
Q Consensus       578 ~~~~~g~~~~l~C~~~~---~~p~~~v~W~k~~~~~~~~~----------~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~  642 (813)
                      ..+.+|+.++|.|.+..   +.|.+.+.|+|++.++....          ..|..+  ..+++|.|.+++.+|+|.|+|.
T Consensus         4 v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C~   83 (201)
T 1dr9_A            4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECV   83 (201)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEE
T ss_pred             EEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEEEE
Confidence            45678999999999842   34678999999987532111          122322  2346799999999999999999


Q ss_pred             EEeeecCcccc--CceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEec-CCCCCeEEEEeCCcccCCCce-
Q psy14896        643 VQSKVSDTGRN--GPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF-GYPVPSYNWTRRGSPLPRNAY-  718 (813)
Q Consensus       643 a~n~~g~~~~~--~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~-g~P~p~i~W~k~g~~l~~~~~-  718 (813)
                      |.|..|.....  ...+.|.|..++....+..         .....|+.++|.|.+. |.|.|.|+|+|||..|..... 
T Consensus        84 ~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~---------~~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~~  154 (201)
T 1dr9_A           84 VLKYEKDAFKREHLAEVTLSVKADFPTPSISD---------FEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTT  154 (201)
T ss_dssp             EEECCTTSCEEEEEEEEEEEEECCCCCCEEEE---------EECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEE
T ss_pred             EEcCCCCccccccccEEEEEEcCCCCCCceEe---------ccCCCCCeEEEEEecCCccCCCEEEEEECCEECccccce
Confidence            99988754321  2346677766532221111         1224599999999995 999999999999998875432 


Q ss_pred             ee-ecc-eE---EEECCCCCCCCEEEEEEEEcCCCceEEEEEE
Q psy14896        719 FE-NFN-RI---LTIPNVKVEDQGEYICRASNDRSALESSVTI  756 (813)
Q Consensus       719 ~~-~~~-~~---L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l  756 (813)
                      +. ... ..   ..+..+..+|.|.|+|.|.|..|..++.+.+
T Consensus       155 ~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~~  197 (201)
T 1dr9_A          155 VSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNW  197 (201)
T ss_dssp             EEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEEE
T ss_pred             EEecCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEec
Confidence            11 111 22   1234556689999999999999998887765

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.81  E-value=1e-19  Score=172.24  Aligned_cols=160  Identities=18%  Similarity=0.266  Sum_probs=118.2

Q ss_pred             ccccEEEEeeeccCCCC--eEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEe
Q psy14896        208 ILNDITLSCYAGGYPNP--SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIIS  285 (813)
Q Consensus       208 ~g~~v~l~C~~~g~P~p--~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s  285 (813)
                      +|++++|.|.+.|.|.|  .+.|+|+|..+....          ..  ....++++.  +.+|+|.|+|.|.|..    +
T Consensus        12 ~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~----------~~--~~~~~l~i~--~~~d~G~Y~C~~~n~~----~   73 (184)
T 3b5h_A           12 LGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDA----------LP--GQKTEFKVD--SDDQWGEYSCVFLPEP----M   73 (184)
T ss_dssp             ETTEEEEEEEEESCSSCCCEEEEESSSEEEECTT----------CC--CSEEEEEEC--GGGCCEEEEEEEESTT----S
T ss_pred             cCCCEEEEEECCCCCCCceEEEEEeCCEEeeccc----------cc--CCcEEEEEe--chhhCeEEEEEEECCc----C
Confidence            34789999999887777  999999998763211          00  112233333  5899999999999832    4


Q ss_pred             eeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCC-cceEEEee---ccccccc-cCCccEEEccCc---cEEEee
Q psy14896        286 ESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYP-GVNYYWAR---DYFPNFV-EEDKRVFVSYDG---ALYFSA  357 (813)
Q Consensus       286 ~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p-~~~v~W~k---~~~~~~~-~~~~~~~~~~~~---~L~i~~  357 (813)
                      ..+.|.|.++|.+........+.+|+.++|.|.+ .|.| .+.+.|+|   ++..+.. ....++.+..++   .|.|.+
T Consensus        74 ~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~  152 (184)
T 3b5h_A           74 GTANIQLHGPPRVKAVKSSEHINEGETAMLVCKS-ESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIEN  152 (184)
T ss_dssp             CEEEEEECCSCCCEESCSEEEECTTSCEEEEEEC-CCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECS
T ss_pred             cEEEEEEecCCceeecCCCcEEcCCCcEEEEEEE-CCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEee
Confidence            5678888888887777767778899999999996 6778 79999999   5543322 223566665544   799999


Q ss_pred             ee-ecCCeeeEEEEeeeccccCCCCCceeeEEc
Q psy14896        358 LE-QIDAGNYSCNVQSKVSDTGRNGPFFPLKVF  389 (813)
Q Consensus       358 v~-~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~  389 (813)
                      ++ .+|+|.|+|.|.|..|.....   +.|.|.
T Consensus       153 v~~~~d~G~Y~C~a~N~~g~~~~~---~~l~V~  182 (184)
T 3b5h_A          153 LNMEADPGQYRCNGTSSKGSDQAI---ITLRVR  182 (184)
T ss_dssp             CCTTTSSEEEEEEEEETTEEEEEE---EEEEEC
T ss_pred             ccccccCceEEEEEEeCCCcceEE---EEEEEe
Confidence            99 999999999999998864332   666664

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.80  E-value=3e-19  Score=171.51  Aligned_cols=158  Identities=16%  Similarity=0.128  Sum_probs=110.0

Q ss_pred             ceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCC-CeEE-EeeCccEEEEeecccCCeeEEEEEEeeecC--cccc
Q psy14896        578 EIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEED-KRVF-VSYDGALYFSALEQIDAGNYSCNVQSKVSD--TGRN  653 (813)
Q Consensus       578 ~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~-~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~--~~~~  653 (813)
                      ..+.+|++++|.|.+ . .|.+.+.|+|+|..+..... .+.. ...++.|.|.+++.+|+|.|+|.|.|..+.  ....
T Consensus        17 ~~v~~G~~v~L~C~~-~-~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~   94 (201)
T 1nkr_A           17 PLVKSEETVILQCWS-D-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAP   94 (201)
T ss_dssp             SEEETTCCEEEEEEE-S-SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBTTBTTCCCCC
T ss_pred             CccCCCCcEEEEEec-c-CCCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEecCCCCccccCC
Confidence            567789999999998 3 37789999999975321110 0011 123467999999999999999999875321  1122


Q ss_pred             CceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCcee---e--ecceEEEE
Q psy14896        654 GPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF---E--NFNRILTI  728 (813)
Q Consensus       654 ~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~---~--~~~~~L~i  728 (813)
                      +..+.|.|...+....+...+      ...+.+|++++|.|.+.+ |.+.+.|+|+|..+......   .  .....|.|
T Consensus        95 s~~~~l~V~~~~~~p~i~~~p------~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i  167 (201)
T 1nkr_A           95 SDPLDIVIIGLYEKPSLSAQP------GPTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVNGTFQADFPL  167 (201)
T ss_dssp             CCCEEEEEECSSCCCEEEEES------CSEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEETTEEEEEEEE
T ss_pred             CCCEEEEeeccCCCCceecCC------CCccCCCCeEEEEEeCCC-CCceEEEEECCcccCcccccccccCCceEEEEEe
Confidence            344677776543222222111      135789999999999987 56899999999987643211   1  12568999


Q ss_pred             CCCCCCCCEEEEEEEEcC
Q psy14896        729 PNVKVEDQGEYICRASND  746 (813)
Q Consensus       729 ~~v~~~d~G~Y~C~a~N~  746 (813)
                      .+++  |+|.|+|.|.|.
T Consensus       168 ~~v~--d~G~Y~C~a~~~  183 (201)
T 1nkr_A          168 GPAT--HGGTYRCFGSFH  183 (201)
T ss_dssp             EECC--SCEEEEEEEEET
T ss_pred             CCcC--CCeeEEEEEEcC
Confidence            9998  999999999975

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.80  E-value=6.6e-19  Score=173.41  Aligned_cols=184  Identities=11%  Similarity=0.087  Sum_probs=128.3

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccC
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED  268 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d  268 (813)
                      +|.|...|.. .+.+|     ++|+|.|.+.+ +.+.+.|||+|..+...       .........+++|.|.+. +.+|
T Consensus         7 kP~i~~~P~~-~v~~G-----~~VtL~C~~~~-~~~~~~w~k~g~~~~~~-------~~~~~~~~~~~~L~I~~v-~~~D   71 (242)
T 1p6f_A            7 KPFIWAEPHF-MVPKE-----KQVTICCQGNY-GAVEYQLHFEGSLFAVD-------RPKPPERINKVKFYIPDM-NSRM   71 (242)
T ss_dssp             CCEEEEESCS-EEETT-----CCEEEEEECCT-TCCEEEEEETTEEEEEE-------CCSSCTTCCEEEEEECSC-CGGG
T ss_pred             CCEEEeeCCC-ccCCC-----CcEEEEEeeCC-CCcEEEEEECCCccccc-------cccccCCcceeEEEecCC-Cccc
Confidence            6889888887 66666     67999999976 55799999999765311       000011123456788775 8999


Q ss_pred             CeeEEEEeecCcee-eEeeeeEEeeeee---cccccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCcc
Q psy14896        269 RGSYHCKASNKFGS-IISESVQLAFGFI---GEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKR  344 (813)
Q Consensus       269 ~G~Y~C~a~n~~g~-~~s~~~~l~v~~~---~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~  344 (813)
                      +|.|+|.+.|..+. ..+..+.|.|...   |.+...+ ...+.+|+.++|.|.+. + +.+.+.|+|+|..+..   .+
T Consensus        72 sG~Y~C~~~~~~~~s~~S~~~~L~V~~~~~~P~i~~~p-~~~v~~G~~vtL~C~~~-~-~~~~~~w~k~g~~~~~---~~  145 (242)
T 1p6f_A           72 AGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHP-GPEVISGEKVTFYCRLD-T-ATSMFLLLKEGRSSHV---QR  145 (242)
T ss_dssp             CEEEEEEEEETTEECCCCCCEEEEEECCSCCCEEEEES-CSEEETTCEEEEEEECT-T-SCSEEEEEECSSSCEE---EE
T ss_pred             CeEEEEEEecCCccccCCcceEEEeecccCCCceEccC-CCccCCCCcEEEEEecC-C-CCCEEEEEECCCccCc---cc
Confidence            99999999886543 3366788887642   3333222 35678999999999964 3 3469999999987533   12


Q ss_pred             EEEccCccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCc
Q psy14896        345 VFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSN  393 (813)
Q Consensus       345 ~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~  393 (813)
                      .....++.|.|.+++.+|+|.|+|.|.|........+..+.|.|...+.
T Consensus       146 ~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~~~  194 (242)
T 1p6f_A          146 GYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGDIE  194 (242)
T ss_dssp             EECSSEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC---
T ss_pred             cCCCceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEeccCC
Confidence            2233456899999999999999999998752234456778888876543

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.80  E-value=1.3e-19  Score=181.61  Aligned_cols=208  Identities=19%  Similarity=0.234  Sum_probs=118.8

Q ss_pred             ccCCCceeeeeeecccccceEeeccccceeeeeeeCCCCCCCCCceeeCCCceeecCCCccccccEEEEeeeccCC----
Q psy14896        147 VTGMEPLLFICEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYP----  222 (813)
Q Consensus       147 ~~~~d~~~y~C~~~~~~~~~~~~~~~~~~~~l~v~~p~~~~~~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P----  222 (813)
                      ++..|+|.|.|.+..         .....+.+.+..      +|.+...|..+.+.+|     ++++|.|.+.+.|    
T Consensus        11 v~~~dsg~Y~C~a~g---------~~~~~~~~~~~~------~~~~~~~p~~~~v~~G-----~~v~L~C~~~~~~~~~~   70 (254)
T 2c1o_A           11 VRPGTSVKLSCKASG---------YSFTNYWMNWLR------ELVMTQSPLTLSVTIG-----QPASISCKSSQSLLYSN   70 (254)
T ss_dssp             ------------------------------------------CCCEEEECSEEEECTT-----SCEEEEEEESSCCBCSS
T ss_pred             ecCCccEEEEEcCch---------hhhhhhhhheee------ceeEEeCCceEEecCC-----CcEEEEeeccCcccccC
Confidence            677899999999961         111122222211      4678877888888777     6799999999987    


Q ss_pred             -CCeEEEeecc--cccccccc--cccccCCCccEEee-C---CeEEEcCCccccCCeeEEEEeecCceeeEeeeeEEeee
Q psy14896        223 -NPSYEWFKED--YVQDRLVA--NLIDPLSDKRFTLS-G---GNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFG  293 (813)
Q Consensus       223 -~p~v~W~k~g--~~l~~~~~--~~~~~~~~~~~~~~-~---~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~  293 (813)
                       .+.|.|||++  ..+.....  .........++... +   .+|.|.+. +.+|+|.|+|.|.|..+......+.|.|.
T Consensus        71 ~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~  149 (254)
T 2c1o_A           71 GKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRV-EAEDLGIYYCVQGSHFPPTFGAGTKLELK  149 (254)
T ss_dssp             SCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC-CGGGCSEEEEEECSSSSCEEBCCEEEEEC
T ss_pred             CCCceEEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEEEEEECcC-CcccCEEEEEEEEcCcceEecCCEEEEEC
Confidence             4899999854  22210000  00011122455443 2   26888875 89999999999999876544444566664


Q ss_pred             e---ecccccCCCCceeecCCCeEEEecCCCCCCc-ceEEEeeccccccccCCccEE--Ecc------CccEEEeeeeec
Q psy14896        294 F---IGEFNLKRAPEIGNQNWGKAMFCDPPTNYPG-VNYYWARDYFPNFVEEDKRVF--VSY------DGALYFSALEQI  361 (813)
Q Consensus       294 ~---~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~-~~v~W~k~~~~~~~~~~~~~~--~~~------~~~L~i~~v~~~  361 (813)
                      .   +|.+.+.........|+.++|.|.+.+..|. ++++|+|||+++......+..  ...      .+.|.|.++..+
T Consensus       150 ~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~  229 (254)
T 2c1o_A          150 RADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYE  229 (254)
T ss_dssp             CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHH
T ss_pred             CCCCCCeeEeecCChhhccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEecccccc
Confidence            3   3334433333334467788999997443555 579999999875322001111  111      236999999999


Q ss_pred             CCeeeEEEEeeecc
Q psy14896        362 DAGNYSCNVQSKVS  375 (813)
Q Consensus       362 D~G~Y~C~a~n~~g  375 (813)
                      |+|.|+|.|.|...
T Consensus       230 d~G~Y~C~a~n~~~  243 (254)
T 2c1o_A          230 RHNSYTCEATHKTS  243 (254)
T ss_dssp             TCCEEEEEEECTTC
T ss_pred             CCCeEEEEEEcCCC
Confidence            99999999999764

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.80  E-value=1.4e-19  Score=173.61  Aligned_cols=155  Identities=20%  Similarity=0.328  Sum_probs=107.3

Q ss_pred             ccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeee
Q psy14896        208 ILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISES  287 (813)
Q Consensus       208 ~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~  287 (813)
                      +|++++|.|.+   |.+.|+|||||..+...             ...+++|.|.+. +.+|+|.|+|.+.+..    +..
T Consensus        17 ~G~~v~L~C~~---p~~~i~W~k~g~~l~~~-------------~~~~~~L~i~~v-~~~DsG~Y~C~~~~~~----s~~   75 (204)
T 1sy6_A           17 EDGSVLLTCDA---EAKNITWFKDGKMIGFL-------------TEDKKKWNLGSN-AKDPRGMYQCKGSQNK----SKP   75 (204)
T ss_dssp             SSSEEEEEECS---CSSEEEEEETTEEEEEE-------------ESSCCCEEEEEG-GGCCEEEEEEESSSSC----CCC
T ss_pred             CCCeEEEEEcC---CCCEEEEEECCEECCCC-------------CCCCCeEEeCCC-CcCCCEEEEEEecCCC----Cee
Confidence            35889999998   78999999999876311             113567888875 8999999999987643    233


Q ss_pred             eEEeeee--------------------------e---cccccCCCCceee-cCCCeEEEecCCCCCCcceEEEeeccccc
Q psy14896        288 VQLAFGF--------------------------I---GEFNLKRAPEIGN-QNWGKAMFCDPPTNYPGVNYYWARDYFPN  337 (813)
Q Consensus       288 ~~l~v~~--------------------------~---~~~~~~~~~~~~~-~~~~~~l~C~~~~~~p~~~v~W~k~~~~~  337 (813)
                      +.|.|..                          .   +...+...+..+. +|+.++|.|.   +.|.+.++|+|++.++
T Consensus        76 ~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~G~~v~L~C~---g~p~p~i~W~k~~~~l  152 (204)
T 1sy6_A           76 LQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCP---QYPGSEILWQHNDKNI  152 (204)
T ss_dssp             EEEEEEC------------------------------------CCCCEEEEETTEEEEECS---CCCSSCEEEEETTEEE
T ss_pred             EEEEEEEeccccccccccccccccccccccccccccccccceecCCceeeecCCcEEEEcC---CCCCCceEEEECCEEC
Confidence            4444430                          0   0111122233444 8999999998   6799999999999875


Q ss_pred             cccCCccEEEccCccEEEeee-eecCCeeeEEEEeeeccccCCCCCceeeEE
Q psy14896        338 FVEEDKRVFVSYDGALYFSAL-EQIDAGNYSCNVQSKVSDTGRNGPFFPLKV  388 (813)
Q Consensus       338 ~~~~~~~~~~~~~~~L~i~~v-~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v  388 (813)
                      ......+.....+++|.|.++ +.+|+|.|+|.|.|..|..  .+..+.|.+
T Consensus       153 ~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~--~s~~l~l~~  202 (204)
T 1sy6_A          153 GGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPED--ANFYLYLRA  202 (204)
T ss_dssp             SCCTTCTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGGG--SSCEEEEEE
T ss_pred             CCccCCceEecCCCEEEEeeCCccccCEEEEEEeccCCCCc--eeEEEEEEE
Confidence            443233333335789999999 9999999999999998842  233345544

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.80  E-value=9.5e-20  Score=177.10  Aligned_cols=172  Identities=17%  Similarity=0.182  Sum_probs=118.7

Q ss_pred             CCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcc------------cCCCeEEEeeCc---cEEEEeecccCCeeEE
Q psy14896        576 APEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFV------------EEDKRVFVSYDG---ALYFSALEQIDAGNYS  640 (813)
Q Consensus       576 ~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~------------~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~  640 (813)
                      ....+.+|+.++|.|.+ .+.|.+.|.|+|++....+            ....++.+..++   +|.|.+++.+|+|.|+
T Consensus         9 ~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   87 (213)
T 3d9a_L            9 ATLSVTPGNSVSLSCRA-SQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYF   87 (213)
T ss_dssp             SEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             ccEEEeCCCcEEEEEEC-CCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhCEEEE
Confidence            44567889999999999 7888889999986421111            112456555433   6999999999999999


Q ss_pred             EEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecC-CCCC-eEEEEeCCcccCCC-c
Q psy14896        641 CNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFG-YPVP-SYNWTRRGSPLPRN-A  717 (813)
Q Consensus       641 C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g-~P~p-~i~W~k~g~~l~~~-~  717 (813)
                      |.|.|..|.....  ...|.|...+....+.+.     .....+..|+.++|.|.+.| .|+| .|+|+|+|.++..+ .
T Consensus        88 C~~~~~~~~~~~~--~~~l~V~~~~~~p~v~~~-----~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~  160 (213)
T 3d9a_L           88 CQQSNSWPYTFGG--GTKLEIKRADAAPTVSIF-----PPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL  160 (213)
T ss_dssp             EEECSSSSCEECC--CEEEEECCCCBCCEEEEE-----CCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEE
T ss_pred             EeeecCCcceeCC--CEEEEEecCCCCceeEeE-----CCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceee
Confidence            9999987643222  245666652211111110     00122347999999999997 6665 89999999988766 1


Q ss_pred             ee-----e-----ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEE
Q psy14896        718 YF-----E-----NFNRILTIPNVKVEDQGEYICRASNDRSALESSVT  755 (813)
Q Consensus       718 ~~-----~-----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~  755 (813)
                      ..     .     ...+.|.|.++..+|+|.|+|.|.|..........
T Consensus       161 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~  208 (213)
T 3d9a_L          161 NSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKS  208 (213)
T ss_dssp             EEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSCEEEE
T ss_pred             ecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCCceEEE
Confidence            10     0     11348999999999999999999998766533333

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.79  E-value=2.5e-19  Score=173.64  Aligned_cols=169  Identities=14%  Similarity=0.132  Sum_probs=115.7

Q ss_pred             CCCceeccCCCceEEeCCCCCCCccEEEEccCC--CCC----------cccCCCeEEEeeCc---cEEEEeecccCCeeE
Q psy14896        575 RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDY--FPN----------FVEEDKRVFVSYDG---ALYFSALEQIDAGNY  639 (813)
Q Consensus       575 ~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~--~~~----------~~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y  639 (813)
                      +.+..+.+|+.++|.|.+ .+.|.+.|.|+|++  ...          ......++.+..++   +|.|.+++.+|+|.|
T Consensus         7 p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y   85 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKA-SESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIY   85 (210)
T ss_dssp             CSEEEECTTSCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             CCcEEEcCCCCEEEEeeC-CCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEE
Confidence            345567889999999999 68888899999953  221          00113455554333   699999999999999


Q ss_pred             EEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecC-CCCC-eEEEEeCCcccCCC-
Q psy14896        640 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFG-YPVP-SYNWTRRGSPLPRN-  716 (813)
Q Consensus       640 ~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g-~P~p-~i~W~k~g~~l~~~-  716 (813)
                      +|.|.|..+.....  ...|.|...+....+.+     ......+..|+.++|.|.+.| .|++ .|+|+|||.++..+ 
T Consensus        86 ~C~~~~~~~~~~~~--~~~l~V~~~~~~P~v~~-----~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~  158 (210)
T 1lk3_L           86 FCQQSWNGPLTFGA--GTKLELKRADAAPTVSI-----FPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGV  158 (210)
T ss_dssp             EEEECSSSSCEECC--CEEEEECCCCBCCEEEE-----ECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTE
T ss_pred             EEEEEcCCCceeCC--CEEEEEcCCCcCCeEEE-----ECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCc
Confidence            99999977632221  24566665221111111     000122347999999999997 4554 89999999988765 


Q ss_pred             ce---e-e-e-----cceEEEECCCCCCCCEEEEEEEEcCCCceE
Q psy14896        717 AY---F-E-N-----FNRILTIPNVKVEDQGEYICRASNDRSALE  751 (813)
Q Consensus       717 ~~---~-~-~-----~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~  751 (813)
                      ..   . . .     ..+.|.|.++..+|+|.|+|.|.|......
T Consensus       159 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~  203 (210)
T 1lk3_L          159 LDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSSP  203 (210)
T ss_dssp             EEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSSC
T ss_pred             eEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCCe
Confidence            11   1 1 1     123799999999999999999999876443

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.78  E-value=1.3e-18  Score=164.50  Aligned_cols=161  Identities=16%  Similarity=0.160  Sum_probs=114.1

Q ss_pred             cccEEEEeeeccCCCCeEEEeeccccccccccc-c---cccCCCccEEee-------CCeEEEcCCccccCCeeEEEEee
Q psy14896        209 LNDITLSCYAGGYPNPSYEWFKEDYVQDRLVAN-L---IDPLSDKRFTLS-------GGNLIINDPRQVEDRGSYHCKAS  277 (813)
Q Consensus       209 g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~-~---~~~~~~~~~~~~-------~~~l~i~~~~~~~d~G~Y~C~a~  277 (813)
                      |++++|.|.+.+.|.+.|.|+|++..+...... .   -......++...       +.+|.|.+. +.+|+|.|+|.|.
T Consensus        10 G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v-~~~D~G~Y~C~~~   88 (184)
T 2ny1_B           10 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNL-KIEDSDTYICEVE   88 (184)
T ss_dssp             TSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSC-CGGGCEEEEEEET
T ss_pred             CCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecC-CHHHCEEEEEEEE
Confidence            477999999999999999999998642110000 0   001112333332       234888885 8999999999999


Q ss_pred             cCceeeEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCccEEEccCccEEEee
Q psy14896        278 NKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSA  357 (813)
Q Consensus       278 n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~  357 (813)
                      |..|     .+.|.|...+    ......+.+|+.++|.|.+ .+.|.+.++|++++..+         ....+.|.|.+
T Consensus        89 ~~~~-----~~~l~V~~~~----~~~~~~v~~g~~~~l~C~~-~~~p~~~v~W~~~~~~~---------~~~~~~L~i~~  149 (184)
T 2ny1_B           89 DQKE-----EVQLLVFGLT----ANSDTHLLQGQSLTLTLES-PPGSSPSVQCRSPRGKN---------IQGGKTLSVSQ  149 (184)
T ss_dssp             TEEE-----EEEEEEEEEE----ESSCSEEETTCCEEEEEEC-CTTCCCEEEEECTTSCE---------EEESSEEEESS
T ss_pred             cCCC-----cEEEEEEEec----CCCCceeecCCCEEEEEEc-CCCCCCEEEEEeCCCcc---------ccCceEEEEec
Confidence            9865     3455555422    1334577899999999996 45699999999998753         23567899999


Q ss_pred             eeecCCeeeEEEEeeeccccCCCCCceeeEEccCC
Q psy14896        358 LEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHS  392 (813)
Q Consensus       358 v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~  392 (813)
                      ++.+|+|.|+|.|.|..+...   ..+.|.|...|
T Consensus       150 v~~~d~G~Y~C~a~n~~~~~~---~~~~l~V~~~p  181 (184)
T 2ny1_B          150 LELQDSGTWTCTVLQNQKKVE---FKIDIVVLAFQ  181 (184)
T ss_dssp             CCGGGCEEEEEEEEETTEEEE---EEEEEEEECCC
T ss_pred             CCcCCCeEEEEEEEECCceEE---EEEEEEEEecC
Confidence            999999999999998765433   23677776543

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.78  E-value=1.5e-18  Score=166.53  Aligned_cols=180  Identities=14%  Similarity=0.162  Sum_probs=119.7

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEE--eeCCeEEEcCCccc
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFT--LSGGNLIINDPRQV  266 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~  266 (813)
                      +|.|...|. ..+.+|     ++++|.|.+.+ |.+.+.|||+|..+.....       ..+..  ..++.|.|.+. +.
T Consensus         8 ~P~i~~~p~-~~v~~G-----~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~-------~~~~~~~~~~~~l~I~~v-~~   72 (201)
T 1nkr_A            8 KPSLLAHPG-PLVKSE-----ETVILQCWSDV-MFEHFLLHREGMFNDTLRL-------IGEHHDGVSKANFSISRM-TQ   72 (201)
T ss_dssp             CCEEEEESC-SEEETT-----CCEEEEEEESS-CCSEEEEEEESSSCEEEEE-------ECEEETTEEEEEEEESSC-CG
T ss_pred             CCeEEEEcC-CccCCC-----CcEEEEEeccC-CCCEEEEEECCCcCCccee-------eeecCCCCceEEEEeccC-Cc
Confidence            588888886 556666     77999999985 8889999999976532100       00011  23466888775 89


Q ss_pred             cCCeeEEEEeecCc----eeeEeeeeEEeeeee---cccccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccc
Q psy14896        267 EDRGSYHCKASNKF----GSIISESVQLAFGFI---GEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFV  339 (813)
Q Consensus       267 ~d~G~Y~C~a~n~~----g~~~s~~~~l~v~~~---~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~  339 (813)
                      +|+|.|+|.|.|..    +...+..+.|.|...   |.+...+. ..+.+|+.++|.|.+. + |.+.+.|+|+|..+..
T Consensus        73 ~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~-~~v~~G~~v~L~C~~~-~-~~~~~~w~k~g~~~~~  149 (201)
T 1nkr_A           73 DLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPG-PTVLAGENVTLSCSSR-S-SYDMYHLSREGEAHER  149 (201)
T ss_dssp             GGCEEEEEEEEBTTBTTCCCCCCCCEEEEEECSSCCCEEEEESC-SEECTTCEEEEEEEES-S-CCSEEEEEETTCSSCE
T ss_pred             ccCeEEEEeEecCCCCccccCCCCCEEEEeeccCCCCceecCCC-CccCCCCeEEEEEeCC-C-CCceEEEEECCcccCc
Confidence            99999999998643    223356677777653   22333333 4678999999999964 3 5689999999987533


Q ss_pred             cCCccEEEc--cCccEEEeeeeecCCeeeEEEEeeeccc--cCCCCCceeeEE
Q psy14896        340 EEDKRVFVS--YDGALYFSALEQIDAGNYSCNVQSKVSD--TGRNGPFFPLKV  388 (813)
Q Consensus       340 ~~~~~~~~~--~~~~L~i~~v~~~D~G~Y~C~a~n~~g~--~~~~s~~~~l~v  388 (813)
                      .........  ..+.|.|.+++  |+|.|+|.|.+....  ....+..+.|.|
T Consensus       150 ~~~~~~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~~~~~~~s~~S~~~~l~V  200 (201)
T 1nkr_A          150 RLPAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFHDSPYEWSKSSDPLLVSV  200 (201)
T ss_dssp             EEECEEEETTEEEEEEEEEECC--SCEEEEEEEEETTEEEEECCCCCCEEEEE
T ss_pred             ccccccccCCceEEEEEeCCcC--CCeeEEEEEEcCCCCCcCCCCCCCEEEEe
Confidence            211111111  14589999998  999999999865321  223345555554

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.78  E-value=4.5e-19  Score=177.65  Aligned_cols=186  Identities=18%  Similarity=0.204  Sum_probs=122.9

Q ss_pred             CceeccCCCceEEeCCCCCCC--ccEEEEccCC--CCCcc--------------cCCCeEEEeeC-----ccEEEEeecc
Q psy14896        577 PEIGNQNWGKAMFCDPPTNYP--GVNYYWARDY--FPNFV--------------EEDKRVFVSYD-----GALYFSALEQ  633 (813)
Q Consensus       577 ~~~~~~g~~~~l~C~~~~~~p--~~~v~W~k~~--~~~~~--------------~~~~~~~~~~~-----~~L~i~~~~~  633 (813)
                      +..+.+|+.++|.|.+ .+.|  .+.|.|+|++  .....              ....|+.+..+     .+|+|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~-~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   87 (257)
T 1f3r_B            9 PGLVRPSETLSLTCTV-SGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQT   87 (257)
T ss_dssp             CSEECTTSEEEEEEEE-ESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCT
T ss_pred             CccccCCceEEEEEEE-ecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCc
Confidence            4567889999999999 5664  6899999963  22110              01346666542     3699999999


Q ss_pred             cCCeeEEEEEEeeecC------ccccCceeeEEEccCCCcc------ccccC-CCCCCCCCcCCCCCCeEEEEEEecCCC
Q psy14896        634 IDAGNYSCNVQSKVSD------TGRNGPFFPLKVFPHSNFQ------QLKFP-NNFPKTFPEAPKAGDKVRLECVAFGYP  700 (813)
Q Consensus       634 ~d~G~Y~C~a~n~~g~------~~~~~~~~~l~v~~~p~~~------~~~~p-~~~~~~~~~~~~~G~~v~l~C~~~g~P  700 (813)
                      +|+|.|.|.|.|..|.      .........|.|..++...      ....+ .....+....+.+|++++|.|.+.+.|
T Consensus        88 ~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~  167 (257)
T 1f3r_B           88 DDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQNI  167 (257)
T ss_dssp             TCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSCC
T ss_pred             ccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECCcC
Confidence            9999999999998641      1111123567887654110      00000 011112235688999999999999999


Q ss_pred             CCeEEEEe--CCcccCC------------Cceee----ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCC
Q psy14896        701 VPSYNWTR--RGSPLPR------------NAYFE----NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEP  762 (813)
Q Consensus       701 ~p~i~W~k--~g~~l~~------------~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P  762 (813)
                      .|.|.|+|  +|..+..            ..++.    ....+|+|.+++.+|+|.|.|.|.|....-.....|.|..++
T Consensus       168 ~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~g~gt~l~V~~~~  247 (257)
T 1f3r_B          168 NNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNGYTFGAGTKLELKAAE  247 (257)
T ss_dssp             BTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSSEEECCCCEECCSSSC
T ss_pred             CCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCCCeECCCEEEEEeCCC
Confidence            99999999  6664410            12221    234579999999999999999999974111224566666554


Q ss_pred             c
Q psy14896        763 N  763 (813)
Q Consensus       763 ~  763 (813)
                      .
T Consensus       248 ~  248 (257)
T 1f3r_B          248 Q  248 (257)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.78  E-value=1.5e-18  Score=166.95  Aligned_cols=160  Identities=16%  Similarity=0.101  Sum_probs=112.8

Q ss_pred             CceeecCCCccccccEEEEeeeccCCC-----CeEEEeecccccccccccccccCCCccEEee-------CCeEEEcCCc
Q psy14896        197 TDVVFDLSKRSILNDITLSCYAGGYPN-----PSYEWFKEDYVQDRLVANLIDPLSDKRFTLS-------GGNLIINDPR  264 (813)
Q Consensus       197 ~~~~v~~g~~~~g~~v~l~C~~~g~P~-----p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~-------~~~l~i~~~~  264 (813)
                      ..+.+.+|     +++.|.|.+.+.|.     +.|.|+|++..+.         ....++.+.       +.+|.|.+. 
T Consensus        10 ~~v~v~~G-----~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~---------~~~~r~~~~~~~~~~~~~~L~I~~v-   74 (202)
T 3bp6_B           10 EVYTVDVG-----SSVSLECDFDRRECTELEGIRASLQKVENDTS---------LQSERATLLEEQLPLGKALFHIPSV-   74 (202)
T ss_dssp             SEEEEETT-----SCEEEEEEECTTC---CTTEEEEEEECC--CC---------CBCSSCEECGGGGGGTEEEEEECSC-
T ss_pred             cCEEEeCC-----CcEEEEEEecCCCCCCccceEEEEEcCCCccc---------ccCCceEEeeccccCCeeEEEECCC-
Confidence            45666666     77999999999886     8999999443321         112222221       256888875 


Q ss_pred             cccCCeeEEEEeecCceeeEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCcc
Q psy14896        265 QVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKR  344 (813)
Q Consensus       265 ~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~  344 (813)
                      +.+|+|.|+|.|.|..|.. +..+.|.|..++..... ......+|+.+.|.|.+ .|.|.|.+.|++++.++.    ..
T Consensus        75 ~~~D~G~Y~C~~~~~~~~~-~~~~~l~V~~~~~~p~~-~~~~~~~g~~v~l~C~~-~g~P~p~v~W~~~~~~~~----~~  147 (202)
T 3bp6_B           75 QVRDSGQYRCLVICGAAWD-YKYLTVKVKASYMRIDT-RILEVPGTGEVQLTCQA-RGYPLAEVSWQNVSVPAN----TS  147 (202)
T ss_dssp             CGGGCEEEEEEEEETTEEE-EEEEEEEEEBCCCCEEE-EEEECTTTCCEEEEEEE-EEBSCCEEEETTCCSCCE----EE
T ss_pred             CHHHCcEEEEEEEeCCCcc-eEEEEEEecCCCCcccE-EEEecCCCCeEEEEEEc-cccCCceEEEEeCCCCcc----Cc
Confidence            8999999999999998876 67788887654321110 11134568889999997 779999999999987642    22


Q ss_pred             EEEccCc---cEEEeeeeecCCeeeEEEEeeeccccC
Q psy14896        345 VFVSYDG---ALYFSALEQIDAGNYSCNVQSKVSDTG  378 (813)
Q Consensus       345 ~~~~~~~---~L~i~~v~~~D~G~Y~C~a~n~~g~~~  378 (813)
                      .....++   .+.|.++..+|+|.|+|.|.|..|...
T Consensus       148 ~~~~~~~~~~~~~i~~v~~~d~G~Y~C~a~N~~g~~~  184 (202)
T 3bp6_B          148 HIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKEL  184 (202)
T ss_dssp             EEECTTSCEEEEEEEEECCCTTCCEEEEEEETTTTEE
T ss_pred             eeeCCCCCEEEEEEEEEEcCCCCEEEEEEEcCCcccc
Confidence            3333444   456779999999999999999988643

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.77  E-value=7.4e-19  Score=164.65  Aligned_cols=155  Identities=12%  Similarity=0.084  Sum_probs=112.6

Q ss_pred             CceeccCCCceEEeCCCCCCCccEEEEccC-CCCCc----------ccCC--CeEEE-eeCccEEEEeecccCCeeEEEE
Q psy14896        577 PEIGNQNWGKAMFCDPPTNYPGVNYYWARD-YFPNF----------VEED--KRVFV-SYDGALYFSALEQIDAGNYSCN  642 (813)
Q Consensus       577 ~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~-~~~~~----------~~~~--~~~~~-~~~~~L~i~~~~~~d~G~Y~C~  642 (813)
                      +..+.+|++++|.|.+....+.+.|.|+|+ +..+.          ....  .|+.+ ..+++|+|.+++.+|+|.|+|.
T Consensus         8 ~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y~C~   87 (180)
T 2dru_A            8 NVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMR   87 (180)
T ss_dssp             EEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEEEEE
T ss_pred             eEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEEEEE
Confidence            456788999999999843345789999995 32111          1111  57777 5678899999999999999999


Q ss_pred             EEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEe-cCCCCCeEEEEeCCcccCCCceeee
Q psy14896        643 VQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVA-FGYPVPSYNWTRRGSPLPRNAYFEN  721 (813)
Q Consensus       643 a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~-~g~P~p~i~W~k~g~~l~~~~~~~~  721 (813)
                      +.+..    .....+.|.|..++..+.+             ...+++++|.|.+ .| |.|.|+|+|+|..|.     ..
T Consensus        88 v~~~~----~~~~~~~L~V~~~~~~P~i-------------~~~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~-----~~  144 (180)
T 2dru_A           88 MLHET----EDQWKITMEVYEMVSKPMI-------------YWECSNATLTCEVLEG-TDVELKLYQGKEHLR-----SL  144 (180)
T ss_dssp             EESSS----EEEEEEEEEEECCCCCCEE-------------EEEGGGTEEEEECSSC-TTCEEEEEETTEEEE-----EE
T ss_pred             EEcCC----eEEEEEEEEEECCCCCCEE-------------EecCCCEEEEEEeCCC-CCCEEEEEECCeECc-----CC
Confidence            97654    2233467888765432221             1234679999999 56 999999999999885     12


Q ss_pred             cceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEE
Q psy14896        722 FNRILTIPNVKVEDQGEYICRASNDRSALESSVTI  756 (813)
Q Consensus       722 ~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l  756 (813)
                      .+.+|.+..  .+|+|.|+|.|.|.+|..++...+
T Consensus       145 ~~~~l~~~~--~~d~g~Y~C~a~N~~~~~~~~~~i  177 (180)
T 2dru_A          145 RQKTMSYQW--TNLRAPFKCKAVNRVSQESEMEVV  177 (180)
T ss_dssp             SSSEEEEEC--SCCSSCEEEEEEETTEEEEEEECC
T ss_pred             CCCEEEEEE--hhcCccEEEEEecCcCccccceeE
Confidence            345677733  789999999999999987776654

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.77  E-value=4.1e-19  Score=164.86  Aligned_cols=153  Identities=13%  Similarity=0.118  Sum_probs=112.8

Q ss_pred             ceeccCCCceEEeCCCCCCCccEEEEccCCCCCccc----------CCCeEEEe-eCccEEEEeecccCCeeEEEEEEee
Q psy14896        578 EIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVE----------EDKRVFVS-YDGALYFSALEQIDAGNYSCNVQSK  646 (813)
Q Consensus       578 ~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~----------~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~  646 (813)
                      ..+.+|+.++|.|.+ .+ |.+.|.|+|++..+...          -..|+.+. .+++|+|.+++.+|+|.|+|.|.|.
T Consensus         5 v~~~~G~~VtL~c~~-~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~   82 (171)
T 1ccz_A            5 IYGVVYGNVTFHVPS-NV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI   82 (171)
T ss_dssp             EEEETTCCEEECCCC-SS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred             EEEEcCCCEEEcCCC-CC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeCC
Confidence            456789999999998 44 88999999987532111          12355553 6789999999999999999999988


Q ss_pred             ecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEE
Q psy14896        647 VSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRIL  726 (813)
Q Consensus       647 ~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L  726 (813)
                      .|     ...+.|.|..++..+.+....          ..   .+|.|.+.|.|.|.|+|+|+|..|....     ...|
T Consensus        83 ~~-----~~~~~L~V~~~~~~p~i~~~~----------~~---~~L~C~~~~~p~p~i~W~~~~~~l~~~~-----~~~l  139 (171)
T 1ccz_A           83 TD-----TMKFFLYVLEMVSKPMIYWEC----------SN---ATLTCEVLEGTDVELKLYQGKEHLRSLR-----QKTM  139 (171)
T ss_dssp             CS-----CEEEEEEEECCCCCCEEEEET----------TT---TEEEEECSSCSSCEEEEEETTEEEEEES-----SSEE
T ss_pred             CC-----cEEEEEEEECcCCCCEEEEec----------CC---cEEEEEeCCCCCcEEEEEECCEECcCCc-----ceEE
Confidence            76     334778887765433221110          01   2799999999999999999999886432     2344


Q ss_pred             EECCCCCCCCEEEEEEEEcCCCceEEEEEEE
Q psy14896        727 TIPNVKVEDQGEYICRASNDRSALESSVTIS  757 (813)
Q Consensus       727 ~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~  757 (813)
                      .+.+  ..|+|.|+|.|.|.+|..+..+.|.
T Consensus       140 ~~~~--~~~~g~Y~C~a~N~~~~~~~~~~l~  168 (171)
T 1ccz_A          140 SYQW--TNLRAPFKCKAVNRVSQESEMEVVN  168 (171)
T ss_dssp             EEEC--SCCSSCEEEEEEETTEEEEEEECCC
T ss_pred             EEec--cCCCceEEEEEEcccCcccceeEEe
Confidence            4443  7899999999999999988877664

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.77  E-value=6.5e-19  Score=171.16  Aligned_cols=178  Identities=21%  Similarity=0.246  Sum_probs=118.8

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeeccc--ccccccc--cccccCCCccEEee----CCeEEEcCC
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDY--VQDRLVA--NLIDPLSDKRFTLS----GGNLIINDP  263 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~--~l~~~~~--~~~~~~~~~~~~~~----~~~l~i~~~  263 (813)
                      ++..|..+.+.+|     ++++|.|.+.|.|.+.|.|||++.  .+.....  .........++...    +.+|.|.+.
T Consensus         4 v~~~p~~~~v~~G-----~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v   78 (213)
T 3d9a_L            4 LTQSPATLSVTPG-----NSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSV   78 (213)
T ss_dssp             EEEECSEEEECTT-----CCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSC
T ss_pred             EEeCCccEEEeCC-----CcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCC
Confidence            4455777888777     679999999999999999999652  1100000  00011112344443    226888875


Q ss_pred             ccccCCeeEEEEeecCceeeEeeeeEEeeee---ecccccCCCCceeecCCCeEEEecCCCCCCcc-eEEEeeccccccc
Q psy14896        264 RQVEDRGSYHCKASNKFGSIISESVQLAFGF---IGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGV-NYYWARDYFPNFV  339 (813)
Q Consensus       264 ~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~---~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~-~v~W~k~~~~~~~  339 (813)
                       +.+|+|.|+|.|.|..+...+..+.|.|..   +|.+.+.........|+.++|.|.+.++.|.+ .++|+|||+++..
T Consensus        79 -~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~  157 (213)
T 3d9a_L           79 -ETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQN  157 (213)
T ss_dssp             -CGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECT
T ss_pred             -ChhhCEEEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcc
Confidence             899999999999998876555556677754   34444434444445788899999975446765 8999999987432


Q ss_pred             cCC--ccEEEccC------ccEEEeeeeecCCeeeEEEEeeecc
Q psy14896        340 EED--KRVFVSYD------GALYFSALEQIDAGNYSCNVQSKVS  375 (813)
Q Consensus       340 ~~~--~~~~~~~~------~~L~i~~v~~~D~G~Y~C~a~n~~g  375 (813)
                      ...  .......+      +.|.|.++..+|+|.|+|.|.|...
T Consensus       158 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~  201 (213)
T 3d9a_L          158 GVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS  201 (213)
T ss_dssp             TEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTC
T ss_pred             eeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccC
Confidence            200  11111112      3799999999999999999999764

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.77  E-value=1.9e-18  Score=172.76  Aligned_cols=178  Identities=16%  Similarity=0.219  Sum_probs=122.4

Q ss_pred             CCceeccCCCceEEeCCCCCCC--ccEEEEccCC--CCCc--c-------------cCCCeEEEeeC-----ccEEEEee
Q psy14896        576 APEIGNQNWGKAMFCDPPTNYP--GVNYYWARDY--FPNF--V-------------EEDKRVFVSYD-----GALYFSAL  631 (813)
Q Consensus       576 ~~~~~~~g~~~~l~C~~~~~~p--~~~v~W~k~~--~~~~--~-------------~~~~~~~~~~~-----~~L~i~~~  631 (813)
                      .+..+.+|+.++|.|.+ .+.|  .+.|.|+|++  ....  .             ....|+.+..+     .+|+|.++
T Consensus         8 ~~~~v~~G~~v~L~C~~-~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (256)
T 1nqb_A            8 GAELVKPGASVKLSCKA-SGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSL   86 (256)
T ss_dssp             CCEEECTTCCEEEEEEE-CSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCeeecCCCcEEEEEEe-ccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECcC
Confidence            44567889999999998 5665  6799999953  2110  0             11356666542     36999999


Q ss_pred             cccCCeeEEEEEEeeecC--ccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCC-----eE
Q psy14896        632 EQIDAGNYSCNVQSKVSD--TGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVP-----SY  704 (813)
Q Consensus       632 ~~~d~G~Y~C~a~n~~g~--~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p-----~i  704 (813)
                      +.+|+|.|.|.|.|..|.  .......+.|.|..+|.+..        .+....+.+|++++|.|.+.|.|+|     .|
T Consensus        87 ~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~--------~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v  158 (256)
T 1nqb_A           87 TSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQ--------TPLSLPVSLGDQASISCRSSQSIVHSNGNTYL  158 (256)
T ss_dssp             CGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEE--------ECSEEEECTTCCEEEEEEESSCCBCTTSCBCE
T ss_pred             ChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEe--------cCcEEEEecCCcEEEEeEecCcccccccceEE
Confidence            999999999999998763  11122335677776654322        1122567899999999999999875     99


Q ss_pred             EEEe--CCcccC------------CCceee----ecceEEEECCCCCCCCEEEEEEEEcCCCce-EEEEEEEEEcCC
Q psy14896        705 NWTR--RGSPLP------------RNAYFE----NFNRILTIPNVKVEDQGEYICRASNDRSAL-ESSVTISIQAEP  762 (813)
Q Consensus       705 ~W~k--~g~~l~------------~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~~~P  762 (813)
                      +|+|  +|..+.            ...++.    ....+|+|.+++.+|+|.|+|.|.|..+.. .....|.|..++
T Consensus       159 ~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~~~  235 (256)
T 1nqb_A          159 EWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKRAA  235 (256)
T ss_dssp             EEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC--
T ss_pred             EEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEECCC
Confidence            9999  666541            011221    224579999999999999999999864322 234567776443

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.77  E-value=1.5e-18  Score=168.64  Aligned_cols=179  Identities=15%  Similarity=0.184  Sum_probs=120.0

Q ss_pred             ceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeec--ccccccccc--cccccCCCccEEee----CCeEEEcC
Q psy14896        191 YFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKE--DYVQDRLVA--NLIDPLSDKRFTLS----GGNLIIND  262 (813)
Q Consensus       191 ~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~--g~~l~~~~~--~~~~~~~~~~~~~~----~~~l~i~~  262 (813)
                      .++..| .+.+.+|     ++++|.|.+.+.|.+.|.|||.  +........  .........++...    +.+|.|.+
T Consensus         3 ~v~~~~-~~~v~~G-----~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~   76 (213)
T 3mj8_L            3 TLTQPP-LVSVALG-----QKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISK   76 (213)
T ss_dssp             CBBCCS-EEEEETT-----SCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESS
T ss_pred             eEEeCC-cEEEeCC-----CCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECC
Confidence            444455 6777777     7799999999999999999993  322211000  00011123344432    34688888


Q ss_pred             CccccCCeeEEEEeecCce--eeEeeeeEEeee----eecccccCCCCceeecCCCeEEEecCCCCCCc-ceEEEeeccc
Q psy14896        263 PRQVEDRGSYHCKASNKFG--SIISESVQLAFG----FIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPG-VNYYWARDYF  335 (813)
Q Consensus       263 ~~~~~d~G~Y~C~a~n~~g--~~~s~~~~l~v~----~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~-~~v~W~k~~~  335 (813)
                      . +.+|+|.|+|.|.|..|  ...+..+.|.|.    .+|.+.+......+..|+.++|.|.+....|+ +.++|+|||.
T Consensus        77 v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~  155 (213)
T 3mj8_L           77 A-QAGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGT  155 (213)
T ss_dssp             C-CGGGCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred             C-ChhhCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCc
Confidence            5 89999999999999887  344667788887    44555554545555578899999997544455 5999999998


Q ss_pred             cccccC--CccEE----EccCccEEEeeeeecCCeeeEEEEeeeccc
Q psy14896        336 PNFVEE--DKRVF----VSYDGALYFSALEQIDAGNYSCNVQSKVSD  376 (813)
Q Consensus       336 ~~~~~~--~~~~~----~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~  376 (813)
                      ++....  .....    ....+.|.|.++..+|+|.|+|.|.|..+.
T Consensus       156 ~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  202 (213)
T 3mj8_L          156 PITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNT  202 (213)
T ss_dssp             EECTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEE
T ss_pred             ccCCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCcc
Confidence            753210  00011    011245899999999999999999998753

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.76  E-value=5.7e-18  Score=171.09  Aligned_cols=189  Identities=16%  Similarity=0.207  Sum_probs=122.9

Q ss_pred             CceeeCCCceeecCCCccccccEEEEeeec---cCCCCeEEEeeccccccccccc--------ccccCCCccEEee----
Q psy14896        190 PYFIKQPTDVVFDLSKRSILNDITLSCYAG---GYPNPSYEWFKEDYVQDRLVAN--------LIDPLSDKRFTLS----  254 (813)
Q Consensus       190 P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~---g~P~p~v~W~k~g~~l~~~~~~--------~~~~~~~~~~~~~----  254 (813)
                      +.+...|..+.+.+|     ++++|.|.+.   +.|.+.|.|+|++.........        ........++.+.    
T Consensus         6 ~~v~~~~~~~~v~~G-----~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~   80 (268)
T 3mj6_A            6 PGLTVSSPQLRVHVG-----ESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTF   80 (268)
T ss_dssp             ------CCEEEEETT-----CCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTT
T ss_pred             cccccCCCceEEecC-----CcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCC
Confidence            445566677887777     7799999997   7788899999987543111000        0001112344432    


Q ss_pred             --CCeEEEcCCccccCCeeEEEEeecCceee-EeeeeEEeeeeecccccCCCCceeecCCCeEEEecC--CCCCCcceEE
Q psy14896        255 --GGNLIINDPRQVEDRGSYHCKASNKFGSI-ISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDP--PTNYPGVNYY  329 (813)
Q Consensus       255 --~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~-~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~--~~~~p~~~v~  329 (813)
                        +++|.|.+. +.+|+|.|+|.|.|..+.. .+..+.|.|.  +   ..+....+.+|+.++|.|.+  ..+.|.+.++
T Consensus        81 ~~~~~L~I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~--~---~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~  154 (268)
T 3mj6_A           81 HNDGSLLLQDV-QKADEGIYTCEIRLKNESMVMKKPVELWVL--P---EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVN  154 (268)
T ss_dssp             TTBCCEEECSC-CGGGCEEEEEEEEETTCCCEEEEEEEEEEE--C---CCCSEEEEETTCCEEECCBCEESSSSCCCEEE
T ss_pred             CCEEEEEECCC-CHhHCEEEEEEEEecCCcceEEEEEEEEEe--c---cCCCccccccCCcEEEEEEecCCCCCCccceE
Confidence              367888885 8999999999999865543 3445666554  1   12335677889999999997  3678999999


Q ss_pred             Eeeccccccc--------------------cCCccEEE-----ccCccEEEeeeeecCCeeeEEEEeeeccccCCCCCce
Q psy14896        330 WARDYFPNFV--------------------EEDKRVFV-----SYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFF  384 (813)
Q Consensus       330 W~k~~~~~~~--------------------~~~~~~~~-----~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~  384 (813)
                      |++++.....                    ....++.+     ..+++|.|.+++.+|+|.|+|.|.|..|...   ..+
T Consensus       155 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~---~~~  231 (268)
T 3mj6_A          155 WMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESR---KTI  231 (268)
T ss_dssp             EEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEE---EEE
T ss_pred             EEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEE---EEE
Confidence            9995432100                    01113333     2356899999999999999999999776533   337


Q ss_pred             eeEEccCC
Q psy14896        385 PLKVFPHS  392 (813)
Q Consensus       385 ~l~v~~~~  392 (813)
                      .|.|...+
T Consensus       232 ~l~V~~~~  239 (268)
T 3mj6_A          232 VLHVVQDE  239 (268)
T ss_dssp             EEEEECC-
T ss_pred             EEEEEcCC
Confidence            77775443

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.76  E-value=2.5e-18  Score=167.59  Aligned_cols=175  Identities=15%  Similarity=0.206  Sum_probs=117.7

Q ss_pred             CCCceeecCCCccccccEEEEeeeccCCCC---eEEEeeccccccccccc--------ccccCCCccEEe-------eCC
Q psy14896        195 QPTDVVFDLSKRSILNDITLSCYAGGYPNP---SYEWFKEDYVQDRLVAN--------LIDPLSDKRFTL-------SGG  256 (813)
Q Consensus       195 ~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p---~v~W~k~g~~l~~~~~~--------~~~~~~~~~~~~-------~~~  256 (813)
                      .|..+.+.+|     ++++|.|.+.+.|.+   .|.|+|++..+......        .+......++.+       .++
T Consensus         5 ~p~~vtv~~G-----~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~   79 (218)
T 4frw_A            5 TSDVVTVVLG-----QDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDG   79 (218)
T ss_dssp             CCSEEEEETT-----SCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBC
T ss_pred             CCCeEEEEcC-----CCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeE
Confidence            3566777676     779999999988766   48999998755321110        111111222322       135


Q ss_pred             eEEEcCCccccCCeeEEEEeecCceeeEeeeeEEeeeeecccccC-CCCceeecCCCeEEEecCCCCCCcceEEEeeccc
Q psy14896        257 NLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK-RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYF  335 (813)
Q Consensus       257 ~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~-~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~  335 (813)
                      +|.|.+. +.+|+|.|+|.+.|..+........+.+..++..... .....+..+..+.+.|.+ .|.|.|.|+|+|++.
T Consensus        80 sL~I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~-~g~p~p~i~W~~~~~  157 (218)
T 4frw_A           80 SVLLRNA-VQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTA-EGSPAPSVTWDTEVK  157 (218)
T ss_dssp             CEEESSC-CGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEE-EEBSCCEEEEEESSC
T ss_pred             EEEEeec-cHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeec-cCCcCceEEEEECCc
Confidence            6888885 8999999999999876655455555555444443332 334445566667888985 788999999999998


Q ss_pred             cccccCCccEEEcc----CccEEEeeeeecCCeeeEEEEeeeccccC
Q psy14896        336 PNFVEEDKRVFVSY----DGALYFSALEQIDAGNYSCNVQSKVSDTG  378 (813)
Q Consensus       336 ~~~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~  378 (813)
                      ++..  ........    .+.|.|.++..+|+|.|+|.|.|..|...
T Consensus       158 ~~~~--~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~  202 (218)
T 4frw_A          158 GTTS--SRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQD  202 (218)
T ss_dssp             CEEE--EEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSC
T ss_pred             cccc--CceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeE
Confidence            7432  22222222    23699999999999999999999987643

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.76  E-value=1.9e-18  Score=167.42  Aligned_cols=177  Identities=18%  Similarity=0.231  Sum_probs=116.5

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecc--cccccccc--cccccCCCccEEee----CCeEEEcCC
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKED--YVQDRLVA--NLIDPLSDKRFTLS----GGNLIINDP  263 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g--~~l~~~~~--~~~~~~~~~~~~~~----~~~l~i~~~  263 (813)
                      ++. |....+.+|     ++++|.|.+.|.|.+.|.|||++  ..+.....  .........++...    +.+|.|.+.
T Consensus         4 v~q-p~~~~v~~G-----~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v   77 (210)
T 1lk3_L            4 LTQ-PPALTVSPG-----EKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPV   77 (210)
T ss_dssp             EEC-CSEEEECTT-----SCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             EEC-CCcEEEcCC-----CCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCC
Confidence            344 777887777     67999999999998999999964  22110000  00001122444433    226888875


Q ss_pred             ccccCCeeEEEEeecCceeeEeeeeEEeeee---ecccccCCCCceeecCCCeEEEecCCCCCCcc-eEEEeeccccccc
Q psy14896        264 RQVEDRGSYHCKASNKFGSIISESVQLAFGF---IGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGV-NYYWARDYFPNFV  339 (813)
Q Consensus       264 ~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~---~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~-~v~W~k~~~~~~~  339 (813)
                       +.+|+|.|+|.|.|..+...+..+.|.|..   +|.+.+.........|+.++|.|.+.+..|.+ .++|+|||+++..
T Consensus        78 -~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~  156 (210)
T 1lk3_L           78 -EADDTAIYFCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRD  156 (210)
T ss_dssp             -CGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCT
T ss_pred             -CHHHCeEEEEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCC
Confidence             899999999999998876545555677654   23344333333445788899999975445654 9999999987532


Q ss_pred             c--CCccEEEccCc------cEEEeeeeecCCeeeEEEEeeecc
Q psy14896        340 E--EDKRVFVSYDG------ALYFSALEQIDAGNYSCNVQSKVS  375 (813)
Q Consensus       340 ~--~~~~~~~~~~~------~L~i~~v~~~D~G~Y~C~a~n~~g  375 (813)
                      .  .........++      .|.|.++..+|+|.|+|.|.|...
T Consensus       157 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~  200 (210)
T 1lk3_L          157 GVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTS  200 (210)
T ss_dssp             TEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTC
T ss_pred             CceEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCC
Confidence            2  00111112233      689999999999999999998754

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.76  E-value=4.3e-19  Score=172.14  Aligned_cols=167  Identities=17%  Similarity=0.213  Sum_probs=116.4

Q ss_pred             CceeccCCCceEEeCCCCCCCccEEEEccC--CCCCc--c--------cCCCeEEEee---CccEEEEeecccCCeeEEE
Q psy14896        577 PEIGNQNWGKAMFCDPPTNYPGVNYYWARD--YFPNF--V--------EEDKRVFVSY---DGALYFSALEQIDAGNYSC  641 (813)
Q Consensus       577 ~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~--~~~~~--~--------~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C  641 (813)
                      ...+.+|+.++|.|.+.   |.+.+.|+|+  +....  .        ....++.+..   +++|.|.+++.+|+|.|+|
T Consensus         9 ~~~v~~G~~v~L~C~~~---~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C   85 (211)
T 3tv3_L            9 SASGSPGQSITISCTGT---SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYC   85 (211)
T ss_dssp             EEEECTTCEEEEEEECC---CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEE
T ss_pred             eEEEcCCCCEEEEEEEC---CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEEEE
Confidence            45678899999999983   8899999995  22110  0        0224555432   3469999999999999999


Q ss_pred             EEEeeecCccccCceeeEEEcc----CCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCC--CCeEEEEeCCcccCC
Q psy14896        642 NVQSKVSDTGRNGPFFPLKVFP----HSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYP--VPSYNWTRRGSPLPR  715 (813)
Q Consensus       642 ~a~n~~g~~~~~~~~~~l~v~~----~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P--~p~i~W~k~g~~l~~  715 (813)
                      .|.|..|. ......+.|.|..    +|.+...  |      ....+.+|+.++|.|.+.|.+  .+.|+|+|||.++..
T Consensus        86 ~~~~~~~~-~~~~~~~~l~V~~~~~~~P~v~~~--~------~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~  156 (211)
T 3tv3_L           86 GSLVGNWD-VIFGGGTKLTVLGQPKAAPSVTLF--P------PSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKA  156 (211)
T ss_dssp             EEEETTTE-EEECCCEEEEECCSCCBCCEEEEE--C------CCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECT
T ss_pred             EEecCCCc-eeECCCceEEEeCCCCcCCeeEec--C------CchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCC
Confidence            99998762 1112235677773    3322211  1      112334799999999999863  479999999998865


Q ss_pred             Ccee----------eecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEE
Q psy14896        716 NAYF----------ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVT  755 (813)
Q Consensus       716 ~~~~----------~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~  755 (813)
                      +...          ....+.|.|.++..+|+|.|+|+|.|..|....++.
T Consensus       157 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~~  206 (211)
T 3tv3_L          157 GVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVA  206 (211)
T ss_dssp             TEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEEC
T ss_pred             CcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeecc
Confidence            3211          011257999999999999999999999877666554

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.76  E-value=1.5e-18  Score=173.06  Aligned_cols=175  Identities=19%  Similarity=0.281  Sum_probs=112.3

Q ss_pred             CceeccCCCceEEeCCCCCCCccE-----EEEccCCCCCccc---------------CCCeEE----EeeCccEEEEeec
Q psy14896        577 PEIGNQNWGKAMFCDPPTNYPGVN-----YYWARDYFPNFVE---------------EDKRVF----VSYDGALYFSALE  632 (813)
Q Consensus       577 ~~~~~~g~~~~l~C~~~~~~p~~~-----v~W~k~~~~~~~~---------------~~~~~~----~~~~~~L~i~~~~  632 (813)
                      ...+..|+.++|.|.+ .+.|.+.     |.|+|++......               ...++.    ...+.+|.|.+++
T Consensus        12 ~~~v~~G~~v~L~C~~-~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v~   90 (248)
T 3pv7_A           12 TQITPLNDNVTIFCNI-FYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQ   90 (248)
T ss_dssp             EEEEETTSCEEECCEE-EESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSCC
T ss_pred             CeEEeCCCCEEEeeEE-ecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCCC
Confidence            3467889999999998 5666665     9999975431100               000000    0112359999999


Q ss_pred             ccCCeeEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecC-CCCC-eEEEEeCC
Q psy14896        633 QIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFG-YPVP-SYNWTRRG  710 (813)
Q Consensus       633 ~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g-~P~p-~i~W~k~g  710 (813)
                      .+|+|.|+|.|.|..+...   ..+.|.|..+|.+...  +.       ..+..|+.++|.|.+.| .|.| .|+|+|+|
T Consensus        91 ~~D~G~Y~C~~~~~~~~~~---~~~~L~V~~~P~v~~~--~~-------~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g  158 (248)
T 3pv7_A           91 LEEAGEYRCEVVVTPLKAQ---GTVQLEVVASPASRLL--LD-------QVGMKENEDKYMCESSGFYPEAINITWEKQT  158 (248)
T ss_dssp             GGGCEEEEEEEEETTEEEE---EEEEEEEEBCCEEEEE--CC---------------CEEEEEEEEEBSSCCEEEEEEEC
T ss_pred             HHHCeEEEEEEEeCCccce---eEEEEEEecCCceEEe--cC-------CccccCCCcEEEEEEccEECCCeEEEEEECC
Confidence            9999999999999775432   3477888887765432  11       23456888899999998 8998 99999999


Q ss_pred             cccCCCce----------------eeecceEEEECCCCCCCCEEEEEEEEcCCCc--eEEEEEEEEEcCCccc
Q psy14896        711 SPLPRNAY----------------FENFNRILTIPNVKVEDQGEYICRASNDRSA--LESSVTISIQAEPNFT  765 (813)
Q Consensus       711 ~~l~~~~~----------------~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~--~~~~~~l~V~~~P~~~  765 (813)
                      .++.....                .....+.|.|.....+|.|.|+|.|.|..+.  .+.++.|.| ..|.++
T Consensus       159 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V-~~p~~~  230 (248)
T 3pv7_A          159 QKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA-ARHSLS  230 (248)
T ss_dssp             SSSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC---------
T ss_pred             ccCCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE-cCCCCC
Confidence            86643210                1112357999999999999999999999886  566778888 445554

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.76  E-value=1.4e-19  Score=175.82  Aligned_cols=170  Identities=14%  Similarity=0.176  Sum_probs=114.5

Q ss_pred             CCceeccCCCceEEeCCCCCCCccEEEEccCC--CCCc----------ccCCCeEEEeeC---ccEEEEeecccCCeeEE
Q psy14896        576 APEIGNQNWGKAMFCDPPTNYPGVNYYWARDY--FPNF----------VEEDKRVFVSYD---GALYFSALEQIDAGNYS  640 (813)
Q Consensus       576 ~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~--~~~~----------~~~~~~~~~~~~---~~L~i~~~~~~d~G~Y~  640 (813)
                      .+..+.+|+.++|.|.+ .+.|.+.|.|+|++  ....          .....++.+..+   .+|.|.+++.+|+|.|+
T Consensus         7 ~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   85 (212)
T 1nfd_E            7 SSASVTVGETVKITCSG-DQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY   85 (212)
T ss_dssp             SEEEEETTSCCCEEEEE-TTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred             CeEEEeCCCcEEEEEec-CCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEE
Confidence            34567889999999998 68888899999863  2210          011345655433   36999999999999999


Q ss_pred             EEEEeeecCccccCceeeEEEccCCCc-cccccCCCCCCCCCcCCCCCCeEEEEEEecCC-CC-CeEEEEeCCcccCCCc
Q psy14896        641 CNVQSKVSDTGRNGPFFPLKVFPHSNF-QQLKFPNNFPKTFPEAPKAGDKVRLECVAFGY-PV-PSYNWTRRGSPLPRNA  717 (813)
Q Consensus       641 C~a~n~~g~~~~~~~~~~l~v~~~p~~-~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~-P~-p~i~W~k~g~~l~~~~  717 (813)
                      |.|.|..+..........|.|...+.. ..+..     ......+.+|+.++|.|.+.|. |+ |.|+|+|+|.++..+.
T Consensus        86 C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~-----~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~  160 (212)
T 1nfd_E           86 CLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTV-----FPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGV  160 (212)
T ss_dssp             EEEEETTTTEEEECCCEEEEEECCCCBCCEEEC-----CCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSC
T ss_pred             EEEEcccCcccccCCceEEEEccCCCCCCEEEe-----eCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCe
Confidence            999973221111122345666432211 11110     0111234579999999999987 55 7999999999886543


Q ss_pred             eee---------ecceEEEECCCCCCCCEEEEEEEEcCCCceE
Q psy14896        718 YFE---------NFNRILTIPNVKVEDQGEYICRASNDRSALE  751 (813)
Q Consensus       718 ~~~---------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~  751 (813)
                      ...         ...+.|.|.++..+|+|.|+|.|.|..+..+
T Consensus       161 ~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~  203 (212)
T 1nfd_E          161 KTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETVE  203 (212)
T ss_dssp             BCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTCC
T ss_pred             ecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCceEE
Confidence            210         1135699999999999999999999977643

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.76  E-value=2.9e-18  Score=168.11  Aligned_cols=185  Identities=15%  Similarity=0.099  Sum_probs=124.4

Q ss_pred             CceeecCCCccccccEEEEeeeccCCCC---eEEEeeccccccccccc------ccccCCCccEE-----------eeCC
Q psy14896        197 TDVVFDLSKRSILNDITLSCYAGGYPNP---SYEWFKEDYVQDRLVAN------LIDPLSDKRFT-----------LSGG  256 (813)
Q Consensus       197 ~~~~v~~g~~~~g~~v~l~C~~~g~P~p---~v~W~k~g~~l~~~~~~------~~~~~~~~~~~-----------~~~~  256 (813)
                      .++.+..|     ++|+|.|.+.+.|.+   .|.|+|++..+......      ........+..           ..++
T Consensus         9 ~~V~~~~G-----~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (225)
T 4fmk_A            9 PEVRGRLG-----GTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDA   83 (225)
T ss_dssp             SEEEEETT-----SCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBC
T ss_pred             CEEEEecC-----CCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcE
Confidence            34555555     779999999987766   48999988654211100      00001111111           2346


Q ss_pred             eEEEcCCccccCCeeEEEEeecCceeeEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCcceEEEeecccc
Q psy14896        257 NLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFP  336 (813)
Q Consensus       257 ~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~  336 (813)
                      +|.|.+. +.+|+|.|+|.|.|..+........+.+..++.+...........++...+.|.+..+.|++.+.|++++..
T Consensus        84 sL~I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~  162 (225)
T 4fmk_A           84 TLAFRGL-RVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGG  162 (225)
T ss_dssp             CEEECSC-CGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCC
T ss_pred             EEEEccC-CHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCcc
Confidence            7899885 899999999999998777656666666666665555555556666777788888778889999999999876


Q ss_pred             ccccCCccEEEccCc------cEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEcc
Q psy14896        337 NFVEEDKRVFVSYDG------ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFP  390 (813)
Q Consensus       337 ~~~~~~~~~~~~~~~------~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~  390 (813)
                      +..  ........++      .|.|.++..+|+|.|+|.|.|..+.... +..+.|.|++
T Consensus       163 ~~~--~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~-~~~v~l~V~Y  219 (225)
T 4fmk_A          163 EAK--DTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPI-LLPVTLSVRY  219 (225)
T ss_dssp             EEE--EEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCE-EEEEECCBTT
T ss_pred             ccC--CcceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEE-EEEEEEEEEE
Confidence            322  1222222333      5999999999999999999998775332 3345555554

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.75  E-value=1.2e-18  Score=168.98  Aligned_cols=169  Identities=15%  Similarity=0.208  Sum_probs=115.2

Q ss_pred             CCCceeccCCCceEEeCCCCCCC---ccEEEEccCCCCCcc------------cCCCeEEEeeCc---cEEEEeecccCC
Q psy14896        575 RAPEIGNQNWGKAMFCDPPTNYP---GVNYYWARDYFPNFV------------EEDKRVFVSYDG---ALYFSALEQIDA  636 (813)
Q Consensus       575 ~~~~~~~~g~~~~l~C~~~~~~p---~~~v~W~k~~~~~~~------------~~~~~~~~~~~~---~L~i~~~~~~d~  636 (813)
                      +.+..+.+|+.++|.|.+ .+.|   .+.|.|+|++....+            ....|+....++   +|.|.+++.+|+
T Consensus         7 p~~~~v~~G~~v~L~C~~-~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   85 (212)
T 1q0x_L            7 ESALTTSPGETVTLTCRS-STGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDE   85 (212)
T ss_dssp             CSEEEECTTCCEEEEEEE-SSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCeEeecCCCCEEEEEEe-cccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCC
Confidence            344567889999999998 5666   578999997421111            123455554332   699999999999


Q ss_pred             eeEEEEEEeeecCccccCceeeEEEcc----CCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCC--eEEEEeCC
Q psy14896        637 GNYSCNVQSKVSDTGRNGPFFPLKVFP----HSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVP--SYNWTRRG  710 (813)
Q Consensus       637 G~Y~C~a~n~~g~~~~~~~~~~l~v~~----~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p--~i~W~k~g  710 (813)
                      |.|.|.|.|..+...  .....|.|..    +|.+...  +      ....+..|+.++|.|.+.|.|++  .|+|+|||
T Consensus        86 G~Y~C~~~~~~~~~~--~~~~~l~V~~~~~~~P~v~~~--~------~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g  155 (212)
T 1q0x_L           86 AIYFCALWSNNKLVF--GGGTKLTVLGQPKSSPTVTLF--P------PSSEELSTAKATLVCTITDFYPGVVTVDWKVDG  155 (212)
T ss_dssp             EEEEEEEECSSCEEE--CCCEEEEECCSCCBCCEEEEE--C------CCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred             EEEEEEEecCchhhc--CCCeEEEEecCCCCCCeeEEe--C------CCHHHccCCcEEEEEEEEEEeCCCeEEEEEECC
Confidence            999999999765321  1224566643    2222110  1      11223469999999999986543  89999999


Q ss_pred             cccCCCcee----e------ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEE
Q psy14896        711 SPLPRNAYF----E------NFNRILTIPNVKVEDQGEYICRASNDRSALESSV  754 (813)
Q Consensus       711 ~~l~~~~~~----~------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~  754 (813)
                      .++..+...    .      ...+.|.|..+..+|+|.|+|.|.|..+....++
T Consensus       156 ~~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~v  209 (212)
T 1q0x_L          156 TPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNKTL  209 (212)
T ss_dssp             EEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEEEE
T ss_pred             EeCCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcceeeee
Confidence            988765321    1      1124699999999999999999999866544443

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.75  E-value=5e-18  Score=166.09  Aligned_cols=182  Identities=14%  Similarity=0.161  Sum_probs=114.1

Q ss_pred             CceeecCCCccccccEEEEeeeccCCC-----CeEEEeeccccccccccc-----ccccCCCccEEee-------CCeEE
Q psy14896        197 TDVVFDLSKRSILNDITLSCYAGGYPN-----PSYEWFKEDYVQDRLVAN-----LIDPLSDKRFTLS-------GGNLI  259 (813)
Q Consensus       197 ~~~~v~~g~~~~g~~v~l~C~~~g~P~-----p~v~W~k~g~~l~~~~~~-----~~~~~~~~~~~~~-------~~~l~  259 (813)
                      ..+.+.+|     ++++|.|.+.|.|.     +.|.|+|++..+......     ........+..+.       +.+|.
T Consensus         9 ~~v~~~~G-----~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~   83 (222)
T 3sbw_C            9 DLYVVEYG-----SNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQ   83 (222)
T ss_dssp             SEEEEETT-----SCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEE
T ss_pred             ccEEEEcC-----CcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEE
Confidence            44566566     77999999987773     489999987433211100     0001112333332       23688


Q ss_pred             EcCCccccCCeeEEEEeecCceeeEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCcceEEEeec-ccccc
Q psy14896        260 INDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARD-YFPNF  338 (813)
Q Consensus       260 i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~-~~~~~  338 (813)
                      |.+. +.+|+|.|+|.|.| .|.. +..+.|.|..++............+|+.++|.|.+ .|.|.|.++|+++ +..+ 
T Consensus        84 I~~v-~~~D~G~Y~C~~~~-~~~~-~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~-~g~P~p~i~W~~~~g~~~-  158 (222)
T 3sbw_C           84 ITDV-KLQDAGVYRCMISY-GGAD-YKRITVKVNAPYNKINQRILVVDPVTSEHELTCQA-EGYPKAEVIWTSSDHQVL-  158 (222)
T ss_dssp             ESSC-CGGGCEEEEEEEES-SSEE-EEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEE-EEBSCCEEEEEETTCCEE-
T ss_pred             EcCc-ccccCeEEEEEEEe-CCCc-eeEEEEEEECCCCCCCceeeeeecCCCcEEEEEEe-cCCCCCeEEEEECCCcee-
Confidence            8885 89999999999999 4544 56788888755443222222255678888999996 6699999999999 5442 


Q ss_pred             ccCCccE--EEccCccEEEe---eeeecCCeeeEEEEeeeccccCCCCCceeeEEccCC
Q psy14896        339 VEEDKRV--FVSYDGALYFS---ALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHS  392 (813)
Q Consensus       339 ~~~~~~~--~~~~~~~L~i~---~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~  392 (813)
                       ....+.  ....++.+.+.   .+..+|+|.|+|.|.|..|.....   +.|.|...|
T Consensus       159 -~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~---~~l~v~~~p  213 (222)
T 3sbw_C          159 -SGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHT---AELVIPELP  213 (222)
T ss_dssp             -CCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEE---EEEECCCC-
T ss_pred             -cCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeE---EEEEecCCc
Confidence             222222  22234444333   567799999999999998754433   667665443

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.75  E-value=3.2e-18  Score=168.61  Aligned_cols=172  Identities=18%  Similarity=0.268  Sum_probs=116.5

Q ss_pred             CCCceeecCCCccccccEEEEeeeccCCC-CeEEEeecccccc--cccccc-cccCCCccEE----------e-eCCeEE
Q psy14896        195 QPTDVVFDLSKRSILNDITLSCYAGGYPN-PSYEWFKEDYVQD--RLVANL-IDPLSDKRFT----------L-SGGNLI  259 (813)
Q Consensus       195 ~p~~~~v~~g~~~~g~~v~l~C~~~g~P~-p~v~W~k~g~~l~--~~~~~~-~~~~~~~~~~----------~-~~~~l~  259 (813)
                      .|.++.+.+|     +++.|.|.+.+.|. +.|.|+|++....  ...... .......++.          + .+++|.
T Consensus         6 ~p~~~~v~~G-----~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~   80 (231)
T 2pet_A            6 VPPLVEVMRG-----KSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLV   80 (231)
T ss_dssp             CCSEEEEETT-----CCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEE
T ss_pred             CCCcEEEEcC-----CCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEE
Confidence            4566777777     67999999999885 8999999876422  000000 0000012222          3 356788


Q ss_pred             EcCCccccCCeeEEEEeecCc-eeeEeeeeEEeeeeecccc---cCCCCceeecCCCe-EEEecCCCCCCcceEEEeecc
Q psy14896        260 INDPRQVEDRGSYHCKASNKF-GSIISESVQLAFGFIGEFN---LKRAPEIGNQNWGK-AMFCDPPTNYPGVNYYWARDY  334 (813)
Q Consensus       260 i~~~~~~~d~G~Y~C~a~n~~-g~~~s~~~~l~v~~~~~~~---~~~~~~~~~~~~~~-~l~C~~~~~~p~~~v~W~k~~  334 (813)
                      |.+. +.+|+|.|+|.|.|.. +.. +..+.|.|..+|...   .......+.+|+.. +|.|.+..+.|.+.++|+|++
T Consensus        81 i~~v-~~~D~G~Y~C~~~~~~~~~~-~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~  158 (231)
T 2pet_A           81 LAEA-QVGDERDYVCVVRAGAAGTA-EATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNG  158 (231)
T ss_dssp             ESSC-CGGGCEEEEEEEECGGGCEE-EEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETT
T ss_pred             Eccc-CcccCceEEEEEEecCCCce-EEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECC
Confidence            8875 8999999999999987 544 778888887765432   22333445577777 999996578899999999999


Q ss_pred             ccccccC--CccEEEcc------C------ccEEEeeeeecCCeeeEEEEeee
Q psy14896        335 FPNFVEE--DKRVFVSY------D------GALYFSALEQIDAGNYSCNVQSK  373 (813)
Q Consensus       335 ~~~~~~~--~~~~~~~~------~------~~L~i~~v~~~D~G~Y~C~a~n~  373 (813)
                      .++....  ..++.+..      +      +.|.|.....+|+|.|+|.|.|.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~  211 (231)
T 2pet_A          159 QRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS  211 (231)
T ss_dssp             EECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred             ccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence            8754333  12333222      1      45888766666799999999995

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.75  E-value=2.6e-18  Score=167.63  Aligned_cols=175  Identities=15%  Similarity=0.240  Sum_probs=116.0

Q ss_pred             CCceeccCCCceEEeCCCCCCC--ccEEEEccCC--CCCcc---------------cCCCeEEEee-----CccEEEEee
Q psy14896        576 APEIGNQNWGKAMFCDPPTNYP--GVNYYWARDY--FPNFV---------------EEDKRVFVSY-----DGALYFSAL  631 (813)
Q Consensus       576 ~~~~~~~g~~~~l~C~~~~~~p--~~~v~W~k~~--~~~~~---------------~~~~~~~~~~-----~~~L~i~~~  631 (813)
                      .+..+.+|+.++|.|.+ .+.|  .+.|.|+|++  .....               ....|+.+..     +++|.|.++
T Consensus         8 ~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (219)
T 1c1e_H            8 GPELKKPGETVKISCKA-SGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNL   86 (219)
T ss_dssp             CCEEECTTCCEEEEEEE-ESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSC
T ss_pred             CCeEecCCCcEEEEEEE-eCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCC
Confidence            34567889999999999 5654  6899999973  32110               1134666653     247999999


Q ss_pred             cccCCeeEEEEEEeeecCcc-ccCceeeEEEccCC-CccccccCCCCCCCCCcCCCCCCeEEEEEEecC-CCCC-eEEEE
Q psy14896        632 EQIDAGNYSCNVQSKVSDTG-RNGPFFPLKVFPHS-NFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFG-YPVP-SYNWT  707 (813)
Q Consensus       632 ~~~d~G~Y~C~a~n~~g~~~-~~~~~~~l~v~~~p-~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g-~P~p-~i~W~  707 (813)
                      +.+|+|.|+|.|.|..+... .....+.|.|...+ ....+..     ......+.+|+.++|.|.+.| .|.| .|+|+
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~-----~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~  161 (219)
T 1c1e_H           87 KNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYP-----LAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWN  161 (219)
T ss_dssp             CGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEE-----ECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEG
T ss_pred             CcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEE-----ecCccccccCCeEEEEEEcccccCCCeEEEEE
Confidence            99999999999999763210 11123567776632 1111110     011134678999999999998 8999 99999


Q ss_pred             eCCcccCCCc---eee----ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEE
Q psy14896        708 RRGSPLPRNA---YFE----NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS  757 (813)
Q Consensus       708 k~g~~l~~~~---~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~  757 (813)
                      |+|..+....   ...    ...+.|.|... ..|.|.|+|.|.|..|.......|.
T Consensus       162 ~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~-~~d~g~Y~C~a~n~~~~~~~~~~i~  217 (219)
T 1c1e_H          162 SGSLSSGVHTFPAVLQSDLYTLSSSVTVPSS-PRPSETVTCNVAHPASSTKVDKKIV  217 (219)
T ss_dssp             GGTBCTTEEECCCEESSSCEEEEEEEEEESS-STTTSCCEEEEEEGGGTEEEEEECC
T ss_pred             eCCcccceEecCCcccCCeEEEEEEEEEecc-cCCCCEEEEEEEeCCCCccEEEecC
Confidence            9998753211   111    11347999444 4466999999999988766555543

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.75  E-value=4.3e-17  Score=162.62  Aligned_cols=176  Identities=18%  Similarity=0.273  Sum_probs=118.1

Q ss_pred             CceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccc--ccccc--ccccccCCCccEEee----CCeEEEc
Q psy14896        190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYV--QDRLV--ANLIDPLSDKRFTLS----GGNLIIN  261 (813)
Q Consensus       190 P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~--l~~~~--~~~~~~~~~~~~~~~----~~~l~i~  261 (813)
                      +.++..|..+.+.+|     ++|+|.|.+.+.|.+.+.|||+...  .....  ..........++...    +.+|.|.
T Consensus         5 ~~v~~~p~~~~v~~G-----~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~   79 (250)
T 3esu_F            5 IVLIQSTSSLSASLG-----DRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTIS   79 (250)
T ss_dssp             CCEECSCSEEEECTT-----CCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred             eeEEecCCEEEeeCC-----CcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEc
Confidence            345556777877777     7799999999999999999997421  10000  000011223344432    2268888


Q ss_pred             CCccccCCeeEEEEeecCceeeEeeeeEEeeeee-------------------cccccCCCCceeecCCCeEEEecCCCC
Q psy14896        262 DPRQVEDRGSYHCKASNKFGSIISESVQLAFGFI-------------------GEFNLKRAPEIGNQNWGKAMFCDPPTN  322 (813)
Q Consensus       262 ~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~-------------------~~~~~~~~~~~~~~~~~~~l~C~~~~~  322 (813)
                      +. +.+|+|.|+|.|.|..+...+....|.|...                   +.+...+....+.+|+.++|.|.+ .+
T Consensus        80 ~v-~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~-~~  157 (250)
T 3esu_F           80 NL-EQEDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKD-SG  157 (250)
T ss_dssp             SC-CGGGCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEEC-CS
T ss_pred             cC-ChhhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEe-cC
Confidence            85 8999999999999987765555667777653                   122233455678899999999996 45


Q ss_pred             CC--cceEEEeec--cccccc---------------cCCccEEEccCc-----cEEEeeeeecCCeeeEEEEee
Q psy14896        323 YP--GVNYYWARD--YFPNFV---------------EEDKRVFVSYDG-----ALYFSALEQIDAGNYSCNVQS  372 (813)
Q Consensus       323 ~p--~~~v~W~k~--~~~~~~---------------~~~~~~~~~~~~-----~L~i~~v~~~D~G~Y~C~a~n  372 (813)
                      .|  .+.+.|+|+  +..+..               ....|+.+..++     +|.|.+++.+|+|.|+|.|.+
T Consensus       158 ~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          158 YAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             TTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             CcccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence            45  789999998  444211               112455554332     699999999999999999997

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.75  E-value=1.9e-17  Score=167.71  Aligned_cols=196  Identities=16%  Similarity=0.188  Sum_probs=126.4

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccc--cccccc--cccccCCCccEEee-C---CeEEE
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYV--QDRLVA--NLIDPLSDKRFTLS-G---GNLII  260 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~--l~~~~~--~~~~~~~~~~~~~~-~---~~l~i  260 (813)
                      .+.|+..|.++.+.+|     ++++|.|.+.+.|.+.|.|||++..  +.....  .........++... +   .+|.|
T Consensus        12 ~~~v~~~p~~~~v~~G-----~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I   86 (276)
T 3auv_A           12 DIQMTQSPSSLSASVG-----DRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTI   86 (276)
T ss_dssp             CCCEEEECSEEECCTT-----CCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEE
T ss_pred             ceeEEeCCCeEEEcCC-----CCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEE
Confidence            3567777888888777     6799999999999999999997531  100000  00001123455543 2   26888


Q ss_pred             cCCccccCCeeEEEEeecCceeeEeeeeEEeeeeec-------------cccc-CCCCceeecCCCeEEEecCCCCCC--
Q psy14896        261 NDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIG-------------EFNL-KRAPEIGNQNWGKAMFCDPPTNYP--  324 (813)
Q Consensus       261 ~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~-------------~~~~-~~~~~~~~~~~~~~l~C~~~~~~p--  324 (813)
                      .+. +.+|+|.|+|.|.|..+...+..+.|.|...+             .+.+ .+....+.+|+.++|.|.+ .+.|  
T Consensus        87 ~~v-~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~-~g~~~~  164 (276)
T 3auv_A           87 SSL-QPEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAA-SGFTIS  164 (276)
T ss_dssp             SSC-CGGGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEE-ESSCGG
T ss_pred             ccC-ChhhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEe-cCccCC
Confidence            885 89999999999999866543445667776543             2222 2345677889999999996 4444  


Q ss_pred             cceEEEeecc--cccc---------------ccCCccEEEccC-----ccEEEeeeeecCCeeeEEEEeeecc--ccCCC
Q psy14896        325 GVNYYWARDY--FPNF---------------VEEDKRVFVSYD-----GALYFSALEQIDAGNYSCNVQSKVS--DTGRN  380 (813)
Q Consensus       325 ~~~v~W~k~~--~~~~---------------~~~~~~~~~~~~-----~~L~i~~v~~~D~G~Y~C~a~n~~g--~~~~~  380 (813)
                      .+.+.|+|++  ....               .....|+.+..+     .+|.|.+++.+|+|.|+|.|.|..+  .....
T Consensus       165 ~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~~~~~~~~f  244 (276)
T 3auv_A          165 DYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVFFLPYAMDYW  244 (276)
T ss_dssp             GSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECSSTTCSCCCB
T ss_pred             CCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcCcCCcCceEE
Confidence            5899999974  2210               012346655543     2799999999999999999999742  11122


Q ss_pred             CCceeeEEccC
Q psy14896        381 GPFFPLKVFPH  391 (813)
Q Consensus       381 s~~~~l~v~~~  391 (813)
                      .....|.|...
T Consensus       245 g~gt~l~V~~~  255 (276)
T 3auv_A          245 GQGTLVTVSSA  255 (276)
T ss_dssp             CCCEEEEEC--
T ss_pred             CCCEEEEEccc
Confidence            33467777544

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.75  E-value=8.1e-18  Score=167.60  Aligned_cols=182  Identities=15%  Similarity=0.150  Sum_probs=119.1

Q ss_pred             CCceeccCCCceEEeCCCCCCC--ccEEEEccCCC--CCc---------------ccCCCeEEEeeC-----ccEEEEee
Q psy14896        576 APEIGNQNWGKAMFCDPPTNYP--GVNYYWARDYF--PNF---------------VEEDKRVFVSYD-----GALYFSAL  631 (813)
Q Consensus       576 ~~~~~~~g~~~~l~C~~~~~~p--~~~v~W~k~~~--~~~---------------~~~~~~~~~~~~-----~~L~i~~~  631 (813)
                      .+..+.+|+.++|.|.+ .+.|  .+.|.|+|++.  ...               .....|+.+..+     .+|+|.++
T Consensus        10 ~~~~v~~G~~v~L~C~~-~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   88 (247)
T 2ghw_B           10 GGGVVQPGKSLRLSCAA-SGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSL   88 (247)
T ss_dssp             CCEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCEEEecCCcEEEEEEe-ccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcC
Confidence            34667899999999998 6766  67899999532  100               012346666542     35999999


Q ss_pred             cccCCeeEEEEEEeeecCccccCceeeEEEccCCCccc------cccCC-CCCCCCCcCCCCCCeEEEEEEecCCCCCeE
Q psy14896        632 EQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQ------LKFPN-NFPKTFPEAPKAGDKVRLECVAFGYPVPSY  704 (813)
Q Consensus       632 ~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~------~~~p~-~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i  704 (813)
                      +.+|+|.|+|.|.|..+.. .......|.|..++....      ...+. .........+.+|++++|.|.+.|.|.|.|
T Consensus        89 ~~~D~G~Y~C~~~n~~~~~-~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v  167 (247)
T 2ghw_B           89 RAEDTAVYYCARDRSYYLD-YWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRSNL  167 (247)
T ss_dssp             CGGGCEEEEEEEEETTEEE-EECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTTCE
T ss_pred             CHHHCEEEEEeeeccCCcc-ccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccceE
Confidence            9999999999999972211 111235677776532000      00000 001122245789999999999999999999


Q ss_pred             EEEe--CCcccC------------CCcee----eecceEEEECCCCCCCCEEEEEEEEcCCCce-EEEEEEEEE
Q psy14896        705 NWTR--RGSPLP------------RNAYF----ENFNRILTIPNVKVEDQGEYICRASNDRSAL-ESSVTISIQ  759 (813)
Q Consensus       705 ~W~k--~g~~l~------------~~~~~----~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~  759 (813)
                      +|+|  +|..+.            ...++    .....+|+|.+++.+|+|.|+|.|.|..+.. .....|.|.
T Consensus       168 ~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~  241 (247)
T 2ghw_B          168 AWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVK  241 (247)
T ss_dssp             EEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             EEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEEC
Confidence            9999  666541            01122    1224579999999999999999999864332 234466665

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.75  E-value=4.5e-18  Score=170.22  Aligned_cols=221  Identities=13%  Similarity=0.108  Sum_probs=110.6

Q ss_pred             eeCCCceeecCCCccccccEEEEeeeccCCCCe-EEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCee
Q psy14896        193 IKQPTDVVFDLSKRSILNDITLSCYAGGYPNPS-YEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS  271 (813)
Q Consensus       193 ~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~-v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~  271 (813)
                      ...|.+..|.+|     ++++|+|.+. .+.|. +.|.-.-..      ..+ ...+..    ...+.|.+. +  +.|.
T Consensus         3 ~v~P~~~~V~~G-----~sv~l~Cs~~-c~~p~~~~~~t~l~~------~~~-~~~g~~----~~~~~l~~v-~--~~~~   62 (291)
T 1mq8_A            3 SVSPSKVILPRG-----GSVLVTCSTS-CDQPKLLGIETPLPK------KEL-LLPGNN----RKVYELSNV-Q--EDSQ   62 (291)
T ss_dssp             EEECSEEEECTT-----CEEEEEEEEC-CSSCSEEEEECSSCC------CCC-CCSCSS----EEEEEEESC-C--SCCC
T ss_pred             EEeCCccEEcCC-----CeEEEEEeCC-CCCCccceEEecCCC------ccc-ccCCCc----eEEEEEEec-c--cCCe
Confidence            345677778777     7799999996 46665 888532110      000 011110    013555553 3  3357


Q ss_pred             EEEEeecCceeeEeeeeEEeeeeecc-cccCCCCceeecCCCeEEEecCCCCCCcc--eEEEeeccccccccCCccEEEc
Q psy14896        272 YHCKASNKFGSIISESVQLAFGFIGE-FNLKRAPEIGNQNWGKAMFCDPPTNYPGV--NYYWARDYFPNFVEEDKRVFVS  348 (813)
Q Consensus       272 Y~C~a~n~~g~~~s~~~~l~v~~~~~-~~~~~~~~~~~~~~~~~l~C~~~~~~p~~--~v~W~k~~~~~~~~~~~~~~~~  348 (813)
                      |+|.+. ..|...+..+.|.|..+|. +.+...+..+.+|+..+|.|.+.++.|..  +|+|+|+++++....  .....
T Consensus        63 y~C~~~-~~~~~~~~~v~l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~--~~~~~  139 (291)
T 1mq8_A           63 PMCYSN-CPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREP--AVGEP  139 (291)
T ss_dssp             CEEEEE-CSSCEEEEECEEEECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEE--CCBTT
T ss_pred             EEEEEE-cCCccEEEEEEEEEecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeeccc--CCCCC
Confidence            999996 4445667888999987766 44555566789999999999998888875  689999998753222  10001


Q ss_pred             cCccEEEeeeeecCCeeeEEEEeeeccccC-----CCCCceeeEEccCCcc-cccccCCCCCCCCCcCCCCCCcEEEEEE
Q psy14896        349 YDGALYFSALEQIDAGNYSCNVQSKVSDTG-----RNGPFFPLKVFPHSNF-QQLKFPNNFPKTFPEAPKAGDKVRLECV  422 (813)
Q Consensus       349 ~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~-----~~s~~~~l~v~~~~~~-~~~~~~~~~~~~~~~~v~~g~~~~l~C~  422 (813)
                      ...+|.+.....+|.+.|+|+|.|..+..+     ..+....|.|++.|.. ..+..        +..+.+|+.++|.|.
T Consensus       140 ~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~--------p~~l~eG~~v~l~C~  211 (291)
T 1mq8_A          140 AEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVS--------PRVLEVDTQGTVVCS  211 (291)
T ss_dssp             EEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC-----------------------------------
T ss_pred             ceEEEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecC--------CcCccCCCeEEEEEE
Confidence            122466555556666799999999866322     2456678888877542 11111        235789999999999


Q ss_pred             EeecCCC---eeeEeecCCcCCCCc
Q psy14896        423 AFGYPVP---SYNWTRRGSPLPRNA  444 (813)
Q Consensus       423 ~~g~p~p---~i~W~~~~~~l~~~~  444 (813)
                      +.|+|++   .|.|+++|+.+....
T Consensus       212 ~~g~~P~~~~~v~w~~~g~~l~~~~  236 (291)
T 1mq8_A          212 LDGLFPVSEAQVHLALGDQRLNPTV  236 (291)
T ss_dssp             -------------------------
T ss_pred             cCCCCCCcccEEEEEECCEecCcee
Confidence            9998554   699999999997643

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.75  E-value=9.1e-19  Score=170.84  Aligned_cols=172  Identities=15%  Similarity=0.216  Sum_probs=114.6

Q ss_pred             CceeccCCCceEEeCCCCCC-CccEEEEccCC---CCC-c------------ccCCCeEEEee---CccEEEEeecccCC
Q psy14896        577 PEIGNQNWGKAMFCDPPTNY-PGVNYYWARDY---FPN-F------------VEEDKRVFVSY---DGALYFSALEQIDA  636 (813)
Q Consensus       577 ~~~~~~g~~~~l~C~~~~~~-p~~~v~W~k~~---~~~-~------------~~~~~~~~~~~---~~~L~i~~~~~~d~  636 (813)
                      ...+.+|+.++|.|.+ .+. |.+.|.|+|..   .+. .            .....|+.+..   +++|.|.+++.+|+
T Consensus         9 ~~~v~~G~~v~L~C~~-~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   87 (218)
T 3s96_B            9 SASFSLGASAKLTCTL-NSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQPEDE   87 (218)
T ss_dssp             EEEEETTSCEEEEEEE-CGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             cEEECCCCcEEEEEEC-CCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEccCCcccC
Confidence            4567889999999999 677 88999999942   110 0            00113454432   34599999999999


Q ss_pred             eeEEEEEEeeecCc--cccCceeeEEEccCCCc-cccccCCCCCCCCCcCCCCCCeEEEEEEecC-CCCC-eEEEEeCCc
Q psy14896        637 GNYSCNVQSKVSDT--GRNGPFFPLKVFPHSNF-QQLKFPNNFPKTFPEAPKAGDKVRLECVAFG-YPVP-SYNWTRRGS  711 (813)
Q Consensus       637 G~Y~C~a~n~~g~~--~~~~~~~~l~v~~~p~~-~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g-~P~p-~i~W~k~g~  711 (813)
                      |.|.|.|.|..|..  ......+.|.|...+.. ..+.+     ......+..|+.++|.|.+.| .|+| .|+|+|||.
T Consensus        88 G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~-----~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~g~  162 (218)
T 3s96_B           88 AIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTV-----FPPSSEELKENKATLVCLISNFSPSGVTVAWKANGT  162 (218)
T ss_dssp             EEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEE-----ECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred             EEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEe-----eCCCcccccCCcEEEEEEECcccCCCeEEEEEECCE
Confidence            99999999988621  11222356777743311 11111     011123456799999999998 5777 899999999


Q ss_pred             ccCCCcee---------eecceEEEECCCCCCCCEEEEEEEEcCCCceEEEE
Q psy14896        712 PLPRNAYF---------ENFNRILTIPNVKVEDQGEYICRASNDRSALESSV  754 (813)
Q Consensus       712 ~l~~~~~~---------~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~  754 (813)
                      ++..+...         ....+.|.|.....+|+|.|+|.|.|..|....++
T Consensus       163 ~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~  214 (218)
T 3s96_B          163 PITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKSL  214 (218)
T ss_dssp             EC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEEE
T ss_pred             ECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCcccccc
Confidence            88653211         01124588999989999999999999987666554

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.75  E-value=4.7e-18  Score=165.05  Aligned_cols=180  Identities=18%  Similarity=0.261  Sum_probs=119.3

Q ss_pred             CceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccc--ccccc--ccccccCCCccEEee----CCeEEEc
Q psy14896        190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYV--QDRLV--ANLIDPLSDKRFTLS----GGNLIIN  261 (813)
Q Consensus       190 P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~--l~~~~--~~~~~~~~~~~~~~~----~~~l~i~  261 (813)
                      |.++..|..+.+.+|     ++++|.|.+.+.|.+.|.|||.+..  .....  ..........++...    +.+|.|.
T Consensus         2 ~~v~~~p~~~~v~~G-----~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~   76 (213)
T 3r06_A            2 IQMTQSPSSLPASLG-----DRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTIS   76 (213)
T ss_dssp             CCEEEECSEEEECTT-----CCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred             CeeEeCCCEEEecCC-----CcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEEC
Confidence            456666788888777     6799999999989999999995421  10000  000011123455433    2368888


Q ss_pred             CCccccCCeeEEEEeecCceeeEeeeeEEee---eeecccccCCCCceeecCCCeEEEecCCCCCC-cceEEEeeccccc
Q psy14896        262 DPRQVEDRGSYHCKASNKFGSIISESVQLAF---GFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYP-GVNYYWARDYFPN  337 (813)
Q Consensus       262 ~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v---~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p-~~~v~W~k~~~~~  337 (813)
                      +. +.+|+|.|+|.|.|..+......+.|.|   ..+|.+.+.........++.++|.|.+..+.| .+.++|+|||.++
T Consensus        77 ~v-~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l  155 (213)
T 3r06_A           77 SL-ESEDIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEK  155 (213)
T ss_dssp             SC-CGGGCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEE
T ss_pred             CC-CcccCEEEEEecccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCccc
Confidence            85 8999999999999987655556677777   33444444444555556777999999754444 4699999999875


Q ss_pred             ccc--CCccEEEccCc------cEEEeeeeecCCeeeEEEEeeecc
Q psy14896        338 FVE--EDKRVFVSYDG------ALYFSALEQIDAGNYSCNVQSKVS  375 (813)
Q Consensus       338 ~~~--~~~~~~~~~~~------~L~i~~v~~~D~G~Y~C~a~n~~g  375 (813)
                      ...  .........++      .|.|.....+|+|.|+|.|.|...
T Consensus       156 ~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~  201 (213)
T 3r06_A          156 RDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTS  201 (213)
T ss_dssp             CTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTC
T ss_pred             CCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEeccc
Confidence            321  11111122233      577888888899999999999754

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.74  E-value=5.5e-18  Score=164.95  Aligned_cols=170  Identities=14%  Similarity=0.191  Sum_probs=113.3

Q ss_pred             CCceeccCCCceEEeCCCCCCC-ccEEEEccCCC--CCc----------ccCCCeEEEeeCc---cEEEEeecccCCeeE
Q psy14896        576 APEIGNQNWGKAMFCDPPTNYP-GVNYYWARDYF--PNF----------VEEDKRVFVSYDG---ALYFSALEQIDAGNY  639 (813)
Q Consensus       576 ~~~~~~~g~~~~l~C~~~~~~p-~~~v~W~k~~~--~~~----------~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y  639 (813)
                      ....+.+|+.++|.|.+..+.+ .+.|.|+|++.  ...          .....|+.+..++   +|.|.+++.+|+|.|
T Consensus         8 ~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y   87 (216)
T 2xzc_L            8 PSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEADY   87 (216)
T ss_dssp             SEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred             CcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEEE
Confidence            4456788999999999634443 57999999642  110          1113466555333   699999999999999


Q ss_pred             EEEEEeeecCccccCceeeEEEccCCCcccccc-CCCCCCCCCcCCCCCCeEEEEEEecC-CCCC-eEEEEeCCcccCCC
Q psy14896        640 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKF-PNNFPKTFPEAPKAGDKVRLECVAFG-YPVP-SYNWTRRGSPLPRN  716 (813)
Q Consensus       640 ~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~-p~~~~~~~~~~~~~G~~v~l~C~~~g-~P~p-~i~W~k~g~~l~~~  716 (813)
                      +|.|.|..+.. .......|.|...+....+.. +.      ...+..|+.++|.|.+.| .|+| .|+|+|+|.++..+
T Consensus        88 ~C~~~~~~~~~-~~~~~~~l~V~~~~~~P~v~~~~~------~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~  160 (216)
T 2xzc_L           88 YCGTWDSSLNP-VFGGGTKLEIKRTVAAPSVFIFPP------SDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGN  160 (216)
T ss_dssp             EEEEECTTSCE-EEBCCEEEEECCCCBCCEEEEECC------CHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSS
T ss_pred             EEEEEeCCCcc-eECCCEEEEEcCCCCCCceEEeCC------ChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCC
Confidence            99999976511 111124566653321111111 10      012236899999999998 4554 89999999998766


Q ss_pred             -ce-e---e-e-----cceEEEECCCCCCCCEEEEEEEEcCCCceEE
Q psy14896        717 -AY-F---E-N-----FNRILTIPNVKVEDQGEYICRASNDRSALES  752 (813)
Q Consensus       717 -~~-~---~-~-----~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~  752 (813)
                       .. .   . .     ..+.|.|..+..+|+|.|+|.|.|.......
T Consensus       161 ~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~  207 (216)
T 2xzc_L          161 SQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPV  207 (216)
T ss_dssp             EEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCE
T ss_pred             eeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCce
Confidence             11 1   1 1     1237999999999999999999998765443

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.74  E-value=2.4e-18  Score=170.28  Aligned_cols=171  Identities=12%  Similarity=0.122  Sum_probs=115.6

Q ss_pred             CCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCc------------ccCCCeEEEe---eCccEEEEeecccCCeeE
Q psy14896        575 RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNF------------VEEDKRVFVS---YDGALYFSALEQIDAGNY  639 (813)
Q Consensus       575 ~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~------------~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y  639 (813)
                      +....+.+|++++|.|.+ .+.|.+.|.|+|++....            .....++...   .+++|.|.+++.+|+|.|
T Consensus        31 p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y  109 (237)
T 3sob_L           31 PSSLSASVGDRVTITCRA-SQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATY  109 (237)
T ss_dssp             CSEEEEETTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             CCeEEEeCCCcEEEEEec-CCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChhhCeEE
Confidence            344567889999999999 677899999999531100            1123455544   234699999999999999


Q ss_pred             EEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCC-C-CCeEEEEeCCcccCCCc
Q psy14896        640 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGY-P-VPSYNWTRRGSPLPRNA  717 (813)
Q Consensus       640 ~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~-P-~p~i~W~k~g~~l~~~~  717 (813)
                      +|.|.|..+....  ....|.|...+....+..     ......+.+|+.++|.|.+.|. | .|.|+|+|+|..+..+.
T Consensus       110 ~C~~~~~~~~~~~--~~~~l~V~~~~~~p~v~~-----~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~  182 (237)
T 3sob_L          110 YCQQSYTTPPTFG--QGTKVEIKRTVAAPSVFI-----FPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNS  182 (237)
T ss_dssp             EEEECSSSSCEEC--CCEEEEEECCCBCCEEEE-----ECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSSE
T ss_pred             EEeeccCCceEEc--CcEEEEEecCCCCCceEE-----eCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCce
Confidence            9999887653222  224566643222222111     0111234468999999999984 4 48999999999887542


Q ss_pred             ----ee-------eecceEEEECCCCCCCCEEEEEEEEcCCCceEEE
Q psy14896        718 ----YF-------ENFNRILTIPNVKVEDQGEYICRASNDRSALESS  753 (813)
Q Consensus       718 ----~~-------~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~  753 (813)
                          ..       ....+.|.|..+..+|+|.|+|+|.|........
T Consensus       183 ~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~  229 (237)
T 3sob_L          183 QESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVT  229 (237)
T ss_dssp             EEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEE
T ss_pred             eecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCcee
Confidence                00       1113569999999999999999999987654433

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.74  E-value=1.1e-17  Score=169.39  Aligned_cols=184  Identities=15%  Similarity=0.167  Sum_probs=117.2

Q ss_pred             CCCceeccCCCceEEeCCCCCCCccEEEEccCCCCC----cc--------cCCCeEEEeeCc---cEEEEeecccCCeeE
Q psy14896        575 RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPN----FV--------EEDKRVFVSYDG---ALYFSALEQIDAGNY  639 (813)
Q Consensus       575 ~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~----~~--------~~~~~~~~~~~~---~L~i~~~~~~d~G~Y  639 (813)
                      +....+.+|+.++|.|.+ .+.|.+.|.|+|++...    ..        ....|+.+..++   +|+|.+++.+|+|.|
T Consensus        19 p~~~~v~~G~~v~L~C~~-~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y   97 (276)
T 3auv_A           19 PSSLSASVGDRVTITCRA-SQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATY   97 (276)
T ss_dssp             CSEEECCTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             CCeEEEcCCCCEEEEeEc-CCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCChhhCEEE
Confidence            344567889999999999 67888999999965311    00        123466655443   699999999999999


Q ss_pred             EEEEEeeecCccccCceeeEEEccCCCccc-----cccCCC-CCCCCCcCCCCCCeEEEEEEecCCC--CCeEEEEeCC-
Q psy14896        640 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQ-----LKFPNN-FPKTFPEAPKAGDKVRLECVAFGYP--VPSYNWTRRG-  710 (813)
Q Consensus       640 ~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~-----~~~p~~-~~~~~~~~~~~G~~v~l~C~~~g~P--~p~i~W~k~g-  710 (813)
                      .|.|.|..+...  .....|.|..+|....     ...|.. ...+....+.+|++++|.|.+.|.|  .|.|.|+|++ 
T Consensus        98 ~C~~~n~~~~~~--~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~  175 (276)
T 3auv_A           98 YCQQHYTTPPTF--GCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWVRQAP  175 (276)
T ss_dssp             EEEECSSSSCCC--CCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECT
T ss_pred             EEEEecCCcccc--cCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEEEEcCC
Confidence            999999765322  1224677766542000     000000 0011235688999999999999887  4899999973 


Q ss_pred             -cccC-----------------CCceee------ecceEEEECCCCCCCCEEEEEEEEcCC---Cc--eEEEEEEEEEcC
Q psy14896        711 -SPLP-----------------RNAYFE------NFNRILTIPNVKVEDQGEYICRASNDR---SA--LESSVTISIQAE  761 (813)
Q Consensus       711 -~~l~-----------------~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~a~N~~---G~--~~~~~~l~V~~~  761 (813)
                       ..+.                 ...++.      ....+|+|.+++.+|+|.|.|.|.|..   +.  -.....|.|...
T Consensus       176 g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~~~~~~~~fg~gt~l~V~~~  255 (276)
T 3auv_A          176 GKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVFFLPYAMDYWGQGTLVTVSSA  255 (276)
T ss_dssp             TCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECSSTTCSCCCBCCCEEEEEC--
T ss_pred             CCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcCcCCcCceEECCCEEEEEccc
Confidence             2210                 011221      123489999999999999999999983   22  123456777543

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.74  E-value=5.8e-17  Score=157.43  Aligned_cols=170  Identities=17%  Similarity=0.272  Sum_probs=115.1

Q ss_pred             eCCCceeecCCCccccccEEEEeeeccC-------CCCeEEEeecccccccc--cc-----cccccCCCccEEee-----
Q psy14896        194 KQPTDVVFDLSKRSILNDITLSCYAGGY-------PNPSYEWFKEDYVQDRL--VA-----NLIDPLSDKRFTLS-----  254 (813)
Q Consensus       194 ~~p~~~~v~~g~~~~g~~v~l~C~~~g~-------P~p~v~W~k~g~~l~~~--~~-----~~~~~~~~~~~~~~-----  254 (813)
                      ..|..+.+.+|     ++|+|.|.+.+.       |.+.|.|||++......  ..     .........|+.+.     
T Consensus         5 ~~p~~v~v~~G-----~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~   79 (214)
T 2zg1_A            5 QVQKSVTVQEG-----LCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQK   79 (214)
T ss_dssp             ECCSEEEEETT-----CCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGG
T ss_pred             eCCcEEEEecC-----ccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCC
Confidence            34667777777     779999999753       57899999997531100  00     00112233455543     


Q ss_pred             -CCeEEEcCCccccCCeeEEEEeecCceeeE---eeeeEEeeeeecc-cccCCCCceeecCCCeEEEecCCCC---CCcc
Q psy14896        255 -GGNLIINDPRQVEDRGSYHCKASNKFGSII---SESVQLAFGFIGE-FNLKRAPEIGNQNWGKAMFCDPPTN---YPGV  326 (813)
Q Consensus       255 -~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~---s~~~~l~v~~~~~-~~~~~~~~~~~~~~~~~l~C~~~~~---~p~~  326 (813)
                       +.+|.|.+. +.+|+|.|+|.|.|..+...   +..+.|.|..++. +.+.. +..+.+|+.++|.|.+..+   .|.|
T Consensus        80 ~~~sL~I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~-~~~~~~G~~v~L~C~~~~~~~~~p~p  157 (214)
T 2zg1_A           80 KNCSLSIGDA-RMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHF-LEPLESGRPTRLSCSLPGSCEAGPPL  157 (214)
T ss_dssp             TBCCEEECSC-CGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC---CCCCTTCCEEEEEECTTCCSCSSCC
T ss_pred             CeEEEEEccC-CHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceec-CccccCCCeEEEEEEeccCCCCCCCc
Confidence             346888885 89999999999998764332   2467788776442 22222 3346788999999997543   5889


Q ss_pred             eEEEeeccccccccCCccEEEccCccEEEeeeeecCCeeeEEEEeeecc
Q psy14896        327 NYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVS  375 (813)
Q Consensus       327 ~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g  375 (813)
                      .++|+|++..+..   .+  ....+.|.|..+..+|+|.|+|.|.|..+
T Consensus       158 ~v~W~~~~~~~~~---~~--~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~  201 (214)
T 2zg1_A          158 TFSWTGNALSPLD---PE--TTRSSELTLTPRPEDHGTNLTCQMKRQGA  201 (214)
T ss_dssp             EEEEESSTTSSSC---SS--CCCSSEEEECCCTTCCSCEEEEEEECC--
T ss_pred             eEEEeCCCCccCC---CC--ceeEEEEEEecccHHcCcEEEEEEEeCCC
Confidence            9999999976321   11  14556899999999999999999999754

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.74  E-value=3.9e-18  Score=165.64  Aligned_cols=168  Identities=14%  Similarity=0.141  Sum_probs=113.7

Q ss_pred             CCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCc------------ccCCCeEEEeeC---ccEEEEeecccCCeeE
Q psy14896        575 RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNF------------VEEDKRVFVSYD---GALYFSALEQIDAGNY  639 (813)
Q Consensus       575 ~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~------------~~~~~~~~~~~~---~~L~i~~~~~~d~G~Y  639 (813)
                      +....+.+|+.++|.|.+ .+.|.+.|.|+|.+....            .....|+.+...   .+|.|.+++.+|+|.|
T Consensus         8 p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y   86 (213)
T 3r06_A            8 PSSLPASLGDRVTINCQA-SQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESEDIGSY   86 (213)
T ss_dssp             CSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEE
T ss_pred             CCEEEecCCCcEEEEEEe-CCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcccCEEE
Confidence            344567889999999999 677899999998431100            012345555432   3699999999999999


Q ss_pred             EEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCC--CeEEEEeCCcccCCCc
Q psy14896        640 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPV--PSYNWTRRGSPLPRNA  717 (813)
Q Consensus       640 ~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~--p~i~W~k~g~~l~~~~  717 (813)
                      +|.|.|..+....  ....|.|...+....+.+     ......+..|+.++|.|.+.|.|+  +.|+|+|+|..+..+.
T Consensus        87 ~C~~~~~~~~~~~--~~~~l~V~~~~~~p~v~~-----~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~  159 (213)
T 3r06_A           87 YCQQYYNYPWTFG--PGTKLEIKRADAKPTVSI-----FPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGV  159 (213)
T ss_dssp             EEEECSSSSCEEC--CCEEEEECCCCBCCEEEE-----ECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTE
T ss_pred             EEecccCCceEEc--CCceEEEeccCCCceeee-----eCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCce
Confidence            9999987643222  224577732222111111     011133457889999999998765  3899999999887642


Q ss_pred             -e---e-e------ecceEEEECCCCCCCCEEEEEEEEcCCCce
Q psy14896        718 -Y---F-E------NFNRILTIPNVKVEDQGEYICRASNDRSAL  750 (813)
Q Consensus       718 -~---~-~------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~  750 (813)
                       .   . .      ...+.|.|.....+|+|.|+|.|.|.....
T Consensus       160 ~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~  203 (213)
T 3r06_A          160 LQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTSTA  203 (213)
T ss_dssp             EEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSS
T ss_pred             EeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccCc
Confidence             1   0 1      112468899999999999999999986443

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.74  E-value=3.8e-17  Score=161.70  Aligned_cols=175  Identities=14%  Similarity=0.160  Sum_probs=113.8

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecc--cccccccc-----cccccCCCccEEee-----CCeEE
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKED--YVQDRLVA-----NLIDPLSDKRFTLS-----GGNLI  259 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g--~~l~~~~~-----~~~~~~~~~~~~~~-----~~~l~  259 (813)
                      ++..|.++.+.+|     ++|+|.|. .+.|.+.|.|||+.  ..+.....     .........++.+.     ..+|.
T Consensus         3 v~q~p~~~~v~~G-----~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~   76 (238)
T 2p1y_A            3 VTQSPRNKVAVTG-----GKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLI   76 (238)
T ss_dssp             EEEECSEEEEETT-----CCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEE
T ss_pred             ceECccceEEeCC-----CEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEE
Confidence            4556777888777     67999999 67899999999973  21110000     00001112344432     34688


Q ss_pred             EcCCccccCCeeEEEEeecCcee----eEeeeeEEeeeeecc------------cccCCCCceeecCCCeEEEecCCCCC
Q psy14896        260 INDPRQVEDRGSYHCKASNKFGS----IISESVQLAFGFIGE------------FNLKRAPEIGNQNWGKAMFCDPPTNY  323 (813)
Q Consensus       260 i~~~~~~~d~G~Y~C~a~n~~g~----~~s~~~~l~v~~~~~------------~~~~~~~~~~~~~~~~~l~C~~~~~~  323 (813)
                      |.+. +.+|+|.|+|.|.|..|.    .....+.|.|...+.            +...+....+.+|+.++|.|.+ .+.
T Consensus        77 I~~v-~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~-~~~  154 (238)
T 2p1y_A           77 LELA-TPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSY-ENS  154 (238)
T ss_dssp             ESSC-CGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEEC-CCT
T ss_pred             EecC-CcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEE-ecC
Confidence            8885 899999999999998652    112345666654432            2222445568899999999996 677


Q ss_pred             CcceEEEeeccc--ccc----------ccCCccEEEcc-----CccEEEeeeeecCCeeeEEEEeeec
Q psy14896        324 PGVNYYWARDYF--PNF----------VEEDKRVFVSY-----DGALYFSALEQIDAGNYSCNVQSKV  374 (813)
Q Consensus       324 p~~~v~W~k~~~--~~~----------~~~~~~~~~~~-----~~~L~i~~v~~~D~G~Y~C~a~n~~  374 (813)
                      |.+.+.|+|++.  ...          .....|+.+..     .++|.|.+++.+|+|.|+|.|.|..
T Consensus       155 p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          155 AFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             TCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             CCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence            889999999742  110          01234554431     2479999999999999999999974

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.74  E-value=4.2e-18  Score=166.54  Aligned_cols=174  Identities=16%  Similarity=0.206  Sum_probs=117.7

Q ss_pred             CceeccCCCceEEeCCCCCCC--ccEEEEccCCC--CCc-c----------------cCCCeEEEeeC-----ccEEEEe
Q psy14896        577 PEIGNQNWGKAMFCDPPTNYP--GVNYYWARDYF--PNF-V----------------EEDKRVFVSYD-----GALYFSA  630 (813)
Q Consensus       577 ~~~~~~g~~~~l~C~~~~~~p--~~~v~W~k~~~--~~~-~----------------~~~~~~~~~~~-----~~L~i~~  630 (813)
                      +..+.+|+.++|.|.+ .+.|  .+.|.|+|+..  ... +                ....|+.+..+     .+|+|.+
T Consensus         9 ~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   87 (222)
T 1q9r_B            9 GGLVQSGGSLRLSCAT-SGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNT   87 (222)
T ss_dssp             CCEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred             ceeEcCCCEEEEEEEe-cCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECc
Confidence            4567889999999998 5554  68899998642  110 0                01246666542     3699999


Q ss_pred             ecccCCeeEEEEEEeeecCcc--ccCceeeEEEccCC-CccccccCCCCCCCCCcCCCCCCeEEEEEEecCC-CCC-eEE
Q psy14896        631 LEQIDAGNYSCNVQSKVSDTG--RNGPFFPLKVFPHS-NFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGY-PVP-SYN  705 (813)
Q Consensus       631 ~~~~d~G~Y~C~a~n~~g~~~--~~~~~~~l~v~~~p-~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~-P~p-~i~  705 (813)
                      ++.+|+|.|.|.|.|..|...  .......|.|...+ ..+.+..     ......+.+|+.++|.|.+.|. |.| .|+
T Consensus        88 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~-----~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~  162 (222)
T 1q9r_B           88 LRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYP-----LAPGSAAQTNSMVTLGCLVKGYFPEPVTVT  162 (222)
T ss_dssp             CCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEE-----ECCCSCCCCSSEEEEEEEEEEEBSSCCEEE
T ss_pred             CCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEE-----ccccccccCCCcEEEEEEEccEECCCCEEE
Confidence            999999999999999765210  11123467776522 1111110     0001235689999999999986 888 999


Q ss_pred             EEeCCcccCCCce-------eeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEE
Q psy14896        706 WTRRGSPLPRNAY-------FENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS  757 (813)
Q Consensus       706 W~k~g~~l~~~~~-------~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~  757 (813)
                      |+++|..+.....       .....+.|.|.++..+| |.|+|.|.|..|.......|.
T Consensus       163 W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~~i~  220 (222)
T 1q9r_B          163 WNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIV  220 (222)
T ss_dssp             EGGGTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEECC
T ss_pred             EecCCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEEecc
Confidence            9999987643211       01113469999999999 999999999999876555543

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.74  E-value=9.3e-18  Score=166.10  Aligned_cols=170  Identities=14%  Similarity=0.115  Sum_probs=110.1

Q ss_pred             CCceeccCCCceEEeCCCCCCCccEEEEccCCC--CC-------------cccCCCeEEEee----CccEEEEeecccCC
Q psy14896        576 APEIGNQNWGKAMFCDPPTNYPGVNYYWARDYF--PN-------------FVEEDKRVFVSY----DGALYFSALEQIDA  636 (813)
Q Consensus       576 ~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~--~~-------------~~~~~~~~~~~~----~~~L~i~~~~~~d~  636 (813)
                      ....+.+|+.++|.|.  .+.|.+.|.|+|+..  ..             ......|+.+..    +.+|+|.+++.+|+
T Consensus         8 ~~~~v~~G~~v~L~C~--~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~Ds   85 (238)
T 2p1y_A            8 RNKVAVTGGKVTLSCN--QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATPSQT   85 (238)
T ss_dssp             SEEEEETTCCEEEEEE--ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCCGGGC
T ss_pred             cceEEeCCCEEEEEee--cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCCcccC
Confidence            4456788999999999  467889999999621  10             001133555442    34699999999999


Q ss_pred             eeEEEEEEeeecCcc--ccCceeeEEEccCCCcccc----ccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCC
Q psy14896        637 GNYSCNVQSKVSDTG--RNGPFFPLKVFPHSNFQQL----KFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRG  710 (813)
Q Consensus       637 G~Y~C~a~n~~g~~~--~~~~~~~l~v~~~p~~~~~----~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g  710 (813)
                      |.|+|.|.|..|...  .......|.|...+.....    ..+.....+....+.+|++++|.|.+.|.|.|.|.|+|++
T Consensus        86 G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~k~~  165 (238)
T 2p1y_A           86 SVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQF  165 (238)
T ss_dssp             EEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEEEEEEEC
T ss_pred             eeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcEEEEEEC
Confidence            999999999876321  1112346777655421000    0000001122256889999999999999999999999974


Q ss_pred             c--ccC------------CCceeee------cceEEEECCCCCCCCEEEEEEEEcCC
Q psy14896        711 S--PLP------------RNAYFEN------FNRILTIPNVKVEDQGEYICRASNDR  747 (813)
Q Consensus       711 ~--~l~------------~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~a~N~~  747 (813)
                      .  .+.            ...++..      ...+|+|.+++.+|+|.|+|.|.|..
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          166 PGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             TTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             CCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence            2  110            1112211      13589999999999999999999974

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.74  E-value=9.5e-18  Score=159.55  Aligned_cols=166  Identities=19%  Similarity=0.195  Sum_probs=110.7

Q ss_pred             CCCceeecCCCccccccEEEEeeecc-CCCCeEEEeeccccccccccc--------ccccCCCccEEe-eCCeEEEcCCc
Q psy14896        195 QPTDVVFDLSKRSILNDITLSCYAGG-YPNPSYEWFKEDYVQDRLVAN--------LIDPLSDKRFTL-SGGNLIINDPR  264 (813)
Q Consensus       195 ~p~~~~v~~g~~~~g~~v~l~C~~~g-~P~p~v~W~k~g~~l~~~~~~--------~~~~~~~~~~~~-~~~~l~i~~~~  264 (813)
                      .|..+.+.+|     ++|+|.|.+.+ .|.+.|.|+|+|..+......        ..++....|+.+ .+++|.|.+. 
T Consensus         4 ~p~~v~~~~G-----~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v-   77 (193)
T 2if7_A            4 TPLMVNGILG-----ESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNL-   77 (193)
T ss_dssp             CCEEEEEETT-----SCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSC-
T ss_pred             CCeEEEEEec-----CeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCC-
Confidence            3556666666     77999999975 566799999998654211100        000111124443 3678999986 


Q ss_pred             cccCCeeEEEEeecCceeeEeeeeEEeeeeecc-cccCCCCceeecCC-CeEEEecCCCCCCcceEEEeeccccccccCC
Q psy14896        265 QVEDRGSYHCKASNKFGSIISESVQLAFGFIGE-FNLKRAPEIGNQNW-GKAMFCDPPTNYPGVNYYWARDYFPNFVEED  342 (813)
Q Consensus       265 ~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~-~~~~~~~~~~~~~~-~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~  342 (813)
                      +.+|+|.|+|.|.|..|.. ...+.|.|..++. +.+.........|. .++|.|.+..+.|.++++|+|+|..+     
T Consensus        78 ~~~D~G~Y~C~~~~~~~~~-~~~~~L~V~~~~~~p~i~~~~~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l-----  151 (193)
T 2if7_A           78 KMEDTGSYRAQISTKTSAK-LSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTL-----  151 (193)
T ss_dssp             CGGGCEEEEEEEECSSCEE-EEEEEEEEECCCEEEEEEECCC---CSSEEEEEEEEEESCCTTCEEEEEETTEEE-----
T ss_pred             CcccCceEEEEEEecCCCe-EEEEEEEEEccCCCCeEecCceeecCCCceEEEEEEEecCCCceEEEEEeCCEEc-----
Confidence            8999999999999988875 4577888765432 22222222223343 68999997555678999999998753     


Q ss_pred             ccEEEccCccEEEeeeeec-CCeeeEEEEeeecccc
Q psy14896        343 KRVFVSYDGALYFSALEQI-DAGNYSCNVQSKVSDT  377 (813)
Q Consensus       343 ~~~~~~~~~~L~i~~v~~~-D~G~Y~C~a~n~~g~~  377 (813)
                           ...+.|.|.....+ |+|.|+|.|.|..|..
T Consensus       152 -----~~~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~  182 (193)
T 2if7_A          152 -----SSQPNLTVSWDPRISSEQDYTCIAENAVSNL  182 (193)
T ss_dssp             -----ESSSEEEEEECTTTCSCCEEEEEEEETTEEE
T ss_pred             -----CCCCeEEEEeccCcCCCCcEEEEEECCCCcc
Confidence                 12346888765555 8999999999998754

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.74  E-value=4.4e-18  Score=168.01  Aligned_cols=177  Identities=16%  Similarity=0.230  Sum_probs=114.6

Q ss_pred             CCCceeccCCCceEEeCCCCCCCcc-EEEEccCCC--CC----------cccCCCeEEEee---CccEEEEeecccCCee
Q psy14896        575 RAPEIGNQNWGKAMFCDPPTNYPGV-NYYWARDYF--PN----------FVEEDKRVFVSY---DGALYFSALEQIDAGN  638 (813)
Q Consensus       575 ~~~~~~~~g~~~~l~C~~~~~~p~~-~v~W~k~~~--~~----------~~~~~~~~~~~~---~~~L~i~~~~~~d~G~  638 (813)
                      +....+.+|+.++|.|.+....+.+ .|.|+|++.  ..          ......++....   +.+|.|.+++.+|+|.
T Consensus        26 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~  105 (234)
T 2j6e_L           26 PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEAD  105 (234)
T ss_dssp             CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSE
T ss_pred             CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEE
Confidence            4455678899999999994323344 799999742  11          001134555543   2369999999999999


Q ss_pred             EEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCC--CeEEEEeCCcccCCC
Q psy14896        639 YSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPV--PSYNWTRRGSPLPRN  716 (813)
Q Consensus       639 Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~--p~i~W~k~g~~l~~~  716 (813)
                      |+|.|.|..+..........|.|...+..    .|..........+.+|+.++|.|.+.|.|+  +.|+|+|||.++..+
T Consensus       106 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~----~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~  181 (234)
T 2j6e_L          106 YYCATWDDSLSAVIFGGGTKLTVLGQPKA----APSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVKAG  181 (234)
T ss_dssp             EEEEEEETTTTEEEECCCBCCCBCCCCCC----CCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECCSS
T ss_pred             EEEEEEcCCcceeEecCCEEEEEecCCCC----CCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEECCCC
Confidence            99999998762111111234555332210    011100011122346889999999998654  389999999988655


Q ss_pred             cee----e------ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEE
Q psy14896        717 AYF----E------NFNRILTIPNVKVEDQGEYICRASNDRSALESSVT  755 (813)
Q Consensus       717 ~~~----~------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~  755 (813)
                      ...    .      ...+.|.|.++..+|+|.|+|.|.|..+..+.++.
T Consensus       182 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~  230 (234)
T 2j6e_L          182 VETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVA  230 (234)
T ss_dssp             EEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCEEEC
T ss_pred             ccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEEecc
Confidence            321    0      12357999999999999999999999877555543

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.74  E-value=5.3e-18  Score=165.93  Aligned_cols=180  Identities=18%  Similarity=0.172  Sum_probs=115.0

Q ss_pred             ccccEEEEeeeccCCC-----CeEEEeeccccccccc---ccccccCCCccEEee-------CCeEEEcCCccccCCeeE
Q psy14896        208 ILNDITLSCYAGGYPN-----PSYEWFKEDYVQDRLV---ANLIDPLSDKRFTLS-------GGNLIINDPRQVEDRGSY  272 (813)
Q Consensus       208 ~g~~v~l~C~~~g~P~-----p~v~W~k~g~~l~~~~---~~~~~~~~~~~~~~~-------~~~l~i~~~~~~~d~G~Y  272 (813)
                      +|++++|.|.+.+.|.     +.|.|+|++....-..   ..........++.+.       +++|.|.+. +.+|+|.|
T Consensus         9 ~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v-~~~D~G~Y   87 (222)
T 4i0k_A            9 VDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRV-RVTDEGSY   87 (222)
T ss_dssp             TTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSC-CGGGCSCE
T ss_pred             CCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCc-ccccCEEE
Confidence            4588999999988764     7899999985431000   000011223344432       467888885 89999999


Q ss_pred             EEEeecCceeeEeeeeEEeeeeecc-cccC-CCCceeecCCCeEEEecCCCCCCcceEEEee-ccccccccCCccEEEcc
Q psy14896        273 HCKASNKFGSIISESVQLAFGFIGE-FNLK-RAPEIGNQNWGKAMFCDPPTNYPGVNYYWAR-DYFPNFVEEDKRVFVSY  349 (813)
Q Consensus       273 ~C~a~n~~g~~~s~~~~l~v~~~~~-~~~~-~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k-~~~~~~~~~~~~~~~~~  349 (813)
                      +|.|.|.. .. +..+.|.|..++. +.+. .....+.+|+.++|.|.+..+.|.+.+.|++ ++..+............
T Consensus        88 ~C~~~~~~-~~-~~~~~l~V~~~~~~p~i~~~~~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~~~~~~~~  165 (222)
T 4i0k_A           88 TCFVSIQD-FD-SAAVSLQVAAPYSKPSMTLEPNKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTSQMANE  165 (222)
T ss_dssp             EEEEEECC-CC-CCCCCCCCCBCCCCCEEECCC-----CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEEEEEEECT
T ss_pred             EEEEEeCC-Cc-eEEEEEEEEcCCCCCcEEeCCCceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCcceeEEcCC
Confidence            99999853 22 5566777765422 1122 2234567788899999976788999999999 45443221112222233


Q ss_pred             Ccc---EEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCc
Q psy14896        350 DGA---LYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSN  393 (813)
Q Consensus       350 ~~~---L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~  393 (813)
                      ++.   |.|.++..+|+|.|+|.|.|..|....   .+.|.|..+|.
T Consensus       166 ~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~---~~~l~V~~~p~  209 (222)
T 4i0k_A          166 RGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDA---HGSVTITGQPL  209 (222)
T ss_dssp             TSCEEEEEEEEEECCTTCEEEEEEEETTTTEEE---EEEEECCC---
T ss_pred             CCeEEEEEEEEEEeCCCCEEEEEEECCCCCCce---EEEEEEeCCcc
Confidence            443   889999999999999999999876443   37777766543

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.73  E-value=1.4e-17  Score=166.19  Aligned_cols=167  Identities=19%  Similarity=0.196  Sum_probs=110.3

Q ss_pred             CCceeccCCCceEEeCCCCCCCccEEEEccCCCCC------------cccCCCeEEEeeCc---cEEEEeecccCCeeEE
Q psy14896        576 APEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPN------------FVEEDKRVFVSYDG---ALYFSALEQIDAGNYS  640 (813)
Q Consensus       576 ~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~------------~~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~  640 (813)
                      ....+.+|+.++|.|.+ .+.|.+.+.|+|+....            ......++....++   +|+|.+++.+|+|.|.
T Consensus        12 ~~~~v~~G~~v~L~C~~-~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   90 (250)
T 3esu_F           12 SSLSASLGDRVTISCRA-SQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQEDIGTYF   90 (250)
T ss_dssp             SEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CEEEeeCCCcEEEEEEe-cccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhhCEEEE
Confidence            34567889999999999 78888999999964210            01123455444333   6999999999999999


Q ss_pred             EEEEeeecCccccCceeeEEEccCCCcc-----------ccccCCCCCCCCCcCCCCCCeEEEEEEecCCC--CCeEEEE
Q psy14896        641 CNVQSKVSDTGRNGPFFPLKVFPHSNFQ-----------QLKFPNNFPKTFPEAPKAGDKVRLECVAFGYP--VPSYNWT  707 (813)
Q Consensus       641 C~a~n~~g~~~~~~~~~~l~v~~~p~~~-----------~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P--~p~i~W~  707 (813)
                      |.|.|..+....  ....|.|..++...           ....+.....+....+.+|++++|.|.+.|.|  .+.+.|+
T Consensus        91 C~~~n~~~~~~~--~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~  168 (250)
T 3esu_F           91 CQQGNTLPWTFG--GGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSSWMNWV  168 (250)
T ss_dssp             EEECSSSSCEEC--CCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGSEEEEE
T ss_pred             EEEeeCCCceEC--CCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCCEEEEE
Confidence            999987653222  22457776542100           00000111112235688999999999999887  7899999


Q ss_pred             eC--CcccCCC-----------------ceee------ecceEEEECCCCCCCCEEEEEEEEc
Q psy14896        708 RR--GSPLPRN-----------------AYFE------NFNRILTIPNVKVEDQGEYICRASN  745 (813)
Q Consensus       708 k~--g~~l~~~-----------------~~~~------~~~~~L~i~~v~~~d~G~Y~C~a~N  745 (813)
                      |+  +..+...                 .++.      ....+|+|.+++.+|+|.|.|.|.|
T Consensus       169 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          169 KQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             EECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             EECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence            98  5443111                 1111      1234799999999999999999998

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.73  E-value=6.8e-18  Score=165.38  Aligned_cols=190  Identities=15%  Similarity=0.101  Sum_probs=128.6

Q ss_pred             EeCCCceEecccccccccCeEEEEEeeccCCCc---EEEeeccccccceec------cccCCCCCceEE-----------
Q psy14896        466 IKQPTDVVFDLSKRSILNDITLSCYAGGYPNPS---YEWFKEDYVQDRLVA------NLIDPLSDKRFT-----------  525 (813)
Q Consensus       466 ~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~---v~W~k~~~~~~~~~~------~~~~~~~~~~~~-----------  525 (813)
                      ++.|.++..     .+|++++|.|.+.+.|.+.   |.|+|++..+.....      .........+..           
T Consensus         5 V~vp~~V~~-----~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (225)
T 4fmk_A            5 VRVLPEVRG-----RLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNAD   79 (225)
T ss_dssp             EECCSEEEE-----ETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSS
T ss_pred             EEeCCEEEE-----ecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccc
Confidence            344555554     7899999999999988764   899998754311100      000001111111           


Q ss_pred             eeCCeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEEeecccccccCCCceeccCCCceEEeCCCCCCCccEEEEcc
Q psy14896        526 LSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWAR  605 (813)
Q Consensus       526 ~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k  605 (813)
                      ..+++|.|.++ +.+|+|.|+|.|.|..+........+.+..++.............++.+.+.|.+..+.|++.+.|++
T Consensus        80 ~~~~sL~I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~  158 (225)
T 4fmk_A           80 LRDATLAFRGL-RVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWIS  158 (225)
T ss_dssp             CCBCCEEECSC-CGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEEC
T ss_pred             cCcEEEEEccC-CHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEE
Confidence            23467999997 99999999999999877766666667776666655555555566677778888776788999999999


Q ss_pred             CCCCCcccCCCeEEEeeCc------cEEEEeecccCCeeEEEEEEeeecCccccCceeeEEEccC
Q psy14896        606 DYFPNFVEEDKRVFVSYDG------ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPH  664 (813)
Q Consensus       606 ~~~~~~~~~~~~~~~~~~~------~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~  664 (813)
                      ++....  .........++      .|.|.++..+|+|.|+|.|.|.+|.... ...+.|.|++.
T Consensus       159 ~~~~~~--~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~-~~~v~l~V~Y~  220 (225)
T 4fmk_A          159 SLGGEA--KDTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPI-LLPVTLSVRYH  220 (225)
T ss_dssp             SSCCEE--EEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCE-EEEEECCBTTC
T ss_pred             CCcccc--CCcceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEE-EEEEEEEEEEC
Confidence            986532  11222223333      4999999999999999999999876433 23355556553

>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein, membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A {Homo sapiens}

Probab=99.73  E-value=6.8e-18  Score=155.02  Aligned_cols=117  Identities=13%  Similarity=0.176  Sum_probs=95.6

Q ss_pred             eEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcCCCC-CC-cccc
Q psy14896         39 SCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDGTN-LN-ELDA  116 (813)
Q Consensus        39 ~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~dgs~-~~-~~~~  116 (813)
                      +||+|+.. +++|.+|+..|+.+||+||+|++++|++||.+++..  ....+||||.+.  ++.|.|+||+. +. .+.+
T Consensus         1 wcY~~~~~-~~tw~~A~~~C~~~g~~La~i~s~~e~~fl~~~~~~--~~~~~WIGl~~~--~~~~~W~dg~~~~~~~y~~   75 (164)
T 3cfw_A            1 WTYHYSEK-PMNWQRARRFCRDNYTDLVAIQNKAEIEYLEKTLPF--SRSYYWIGIRKI--GGIWTWVGTNKSLTEEAEN   75 (164)
T ss_dssp             CEEEEEEE-EECHHHHHHHHHHHSSEECCCCSHHHHHHHHHHSCC--CTTCEEESEEEE--TTEEEETTTCCBCCTTTCC
T ss_pred             CeEEEecC-CcCHHHHHHHHHHCCCEECccCCHHHHHHHHHHhcc--CCccEEEeEECC--CCEEEECCCCcccccccCC
Confidence            49999998 599999999999999999999999999999999742  245799999875  78999999984 53 1257


Q ss_pred             ccCCCCCCcc-cCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        117 AFLPEPADNV-QRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       117 ~~~~~p~~~~-~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      |..++|++.. .++|+.|..........|.+..|.....|+|++.
T Consensus        76 W~~geP~~~~~~~~Cv~~~~~~~~~~~~W~d~~C~~~~~fICe~~  120 (164)
T 3cfw_A           76 WGDGEPNNKKNKEDCVEIYIKRNKDAGKWNDDACHKLKAALCYTA  120 (164)
T ss_dssp             BCTTCCCCGGGCCCEEEECTTCSSSTTCEEEECTTSCEEEEEEEC
T ss_pred             CCCCCCCCCCCCccceeeeccCCCCCCceeCCCCCCCcEeEEccC
Confidence            7777998754 6899999654321245566999999999999995

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.73  E-value=9.7e-18  Score=163.49  Aligned_cols=180  Identities=13%  Similarity=0.179  Sum_probs=113.8

Q ss_pred             CceeeCCCceeecCCCccccccEEEEeeeccC-CCCeEEEeecc--cccccccc--c----ccccCCCccEEee----CC
Q psy14896        190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGY-PNPSYEWFKED--YVQDRLVA--N----LIDPLSDKRFTLS----GG  256 (813)
Q Consensus       190 P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~-P~p~v~W~k~g--~~l~~~~~--~----~~~~~~~~~~~~~----~~  256 (813)
                      |.++..| .+.+.+|     ++++|.|.+.+. |.+.|.|||..  ........  .    ........++...    +.
T Consensus         2 ~~v~~~p-~~~v~~G-----~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~   75 (218)
T 3s96_B            2 LVLTQSS-SASFSLG-----ASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADR   75 (218)
T ss_dssp             CSEECCS-EEEEETT-----SCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEE
T ss_pred             CeEEeCC-cEEECCC-----CcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceE
Confidence            3455556 7777777     779999999998 89999999943  11100000  0    0111122344432    34


Q ss_pred             eEEEcCCccccCCeeEEEEeecCce----eeEeeeeEEeeee----ecccccCCCCceeecCCCeEEEecCCCCCCcc-e
Q psy14896        257 NLIINDPRQVEDRGSYHCKASNKFG----SIISESVQLAFGF----IGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGV-N  327 (813)
Q Consensus       257 ~l~i~~~~~~~d~G~Y~C~a~n~~g----~~~s~~~~l~v~~----~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~-~  327 (813)
                      +|.|.+. +.+|+|.|+|.|.|..|    ...+..+.|.|..    +|.+.+.........++.++|.|.+..+.|.+ .
T Consensus        76 ~L~I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~  154 (218)
T 3s96_B           76 YLSISNI-QPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVT  154 (218)
T ss_dssp             EEEESSC-CGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCE
T ss_pred             EEEEccC-CcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcccCCCeE
Confidence            5888885 89999999999999876    2234557777763    33444434444455677889999976546777 9


Q ss_pred             EEEeeccccccccCCccEEEccCc------cEEEeeeeecCCeeeEEEEeeeccc
Q psy14896        328 YYWARDYFPNFVEEDKRVFVSYDG------ALYFSALEQIDAGNYSCNVQSKVSD  376 (813)
Q Consensus       328 v~W~k~~~~~~~~~~~~~~~~~~~------~L~i~~v~~~D~G~Y~C~a~n~~g~  376 (813)
                      ++|+|||.++............++      .|.|..+..+|+|.|+|.|.|..+.
T Consensus       155 v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~  209 (218)
T 3s96_B          155 VAWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDT  209 (218)
T ss_dssp             EEEEETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEE
T ss_pred             EEEEECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCc
Confidence            999999987533111111111122      3778888888999999999998753

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.73  E-value=2.8e-18  Score=173.38  Aligned_cols=196  Identities=17%  Similarity=0.185  Sum_probs=110.6

Q ss_pred             CCCCCceEEEEEEcCceeEEeecEEEEEeecccccccCCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcc----c
Q psy14896        538 QVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFV----E  613 (813)
Q Consensus       538 ~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~----~  613 (813)
                      ++.|.+.|.|.|.|..|..... ..+.|.      ..+....+.+|+.++|.|.+ .+ +.+.|.|+|.......    .
T Consensus         4 ~~~~~~~y~~~~~~~~g~~~~~-~~~~v~------~~p~~v~v~~G~~v~L~C~~-~~-~~~~v~W~k~~~~~~~~~~~~   74 (270)
T 3qib_D            4 ERADLIAYLKQATKGGGGSGGG-GGMKVI------QTPRYLVKGQGQKAKMRCIP-EK-GHPVVFWYQQNKNNEFKFLIN   74 (270)
T ss_dssp             -------------------------CCCE------EECSEEEEETTSCEEEEEEC-CT-TCCEEEEEEECTTCCEEEEEE
T ss_pred             hhhhHHHHHHHHhccCCccccc-cceeEE------eCCCeEEEcCCCCEEEEEEe-cC-CCceEEEEEECCCCCcEEEEE
Confidence            6789999999999987764322 222222      22334567889999999998 44 7789999983211000    0


Q ss_pred             --CC---------C-eEEEee----CccEEEEeecccCCeeEEEEEEeeecC-ccccCceeeEEEcc------CCCcccc
Q psy14896        614 --ED---------K-RVFVSY----DGALYFSALEQIDAGNYSCNVQSKVSD-TGRNGPFFPLKVFP------HSNFQQL  670 (813)
Q Consensus       614 --~~---------~-~~~~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~~~~l~v~~------~p~~~~~  670 (813)
                        ..         . |+.+..    +.+|+|.+++.+|+|.|.|.+.+..+. .........|.|..      +|.+...
T Consensus        75 ~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~  154 (270)
T 3qib_D           75 FQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVF  154 (270)
T ss_dssp             EETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEE
T ss_pred             ECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEE
Confidence              00         0 454443    346999999999999999999874321 11112224567765      2221110


Q ss_pred             ccCCCCCCCCCcCCCCCCeEEEEEEecC-CCCC-eEEEEeCCcccCCCceee---------------ecceEEEECCCCC
Q psy14896        671 KFPNNFPKTFPEAPKAGDKVRLECVAFG-YPVP-SYNWTRRGSPLPRNAYFE---------------NFNRILTIPNVKV  733 (813)
Q Consensus       671 ~~p~~~~~~~~~~~~~G~~v~l~C~~~g-~P~p-~i~W~k~g~~l~~~~~~~---------------~~~~~L~i~~v~~  733 (813)
                             ......+..|+.++|.|.+.| .|.| .|+|+|||.++..+....               ...+.|.|.....
T Consensus       155 -------~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~  227 (270)
T 3qib_D          155 -------EPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFW  227 (270)
T ss_dssp             -------ECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHH
T ss_pred             -------CCCccccccCCceEEEEEecceeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHh
Confidence                   011123456999999999998 6666 899999999987643221               1124588888888


Q ss_pred             CC-CEEEEEEEEcCCCc
Q psy14896        734 ED-QGEYICRASNDRSA  749 (813)
Q Consensus       734 ~d-~G~Y~C~a~N~~G~  749 (813)
                      +| +|.|+|.|.|....
T Consensus       228 ~d~~g~YtC~v~~~~l~  244 (270)
T 3qib_D          228 QNPRNHFRCQVQFYGLS  244 (270)
T ss_dssp             HSTTCEEEEEEEECCBC
T ss_pred             ccCCCeEEEEEEecCCC
Confidence            88 99999999997543

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.72  E-value=3.7e-17  Score=153.89  Aligned_cols=120  Identities=19%  Similarity=0.256  Sum_probs=99.5

Q ss_pred             cCCCCCCeEEEEEEecCCCCC--eEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVP--SYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ  759 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p--~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  759 (813)
                      ..+..|++++|+|.+ |.|.|  .|+|++.+..+ ...........|.|.+++.+|+|.|.|.|.|..|+.+..+.|+|.
T Consensus        17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l-~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~ltV~   94 (210)
T 1gsm_A           17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSL-GAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVY   94 (210)
T ss_dssp             EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT-CCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc-CcEEecCCccEEEECccCcccCceEEEEEEeCCCceEEEEEEEEE
Confidence            467899999999999 99888  99999977666 222334456789999999999999999999999999999999999


Q ss_pred             cCCcccccCCceeecCCCeEEEEEEEccc-CC----ceEEEEECCEecccc
Q psy14896        760 AEPNFTIPLTDKHMDNQADLTWTCEAFGV-PD----VTYSWFRNGELGHQM  805 (813)
Q Consensus       760 ~~P~~~~~~~~~~~~~g~~~~l~C~~~g~-p~----~~v~W~k~g~~l~~~  805 (813)
                      .+|..+..... .+.+|+.+ |+|.+.|. |.    ++|+|||||++|...
T Consensus        95 ~~P~~~~i~~~-~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~  143 (210)
T 1gsm_A           95 AFPNQLTVSPA-ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGA  143 (210)
T ss_dssp             BCCSEEEEESS-SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTC
T ss_pred             ecCCCcEEccc-eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccc
Confidence            99986542222 66678888 99999986 63    489999999999654

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.72  E-value=1.9e-17  Score=168.17  Aligned_cols=183  Identities=17%  Similarity=0.203  Sum_probs=119.1

Q ss_pred             CCceeccCCCceEEeCCCCCCC--ccEEEEccCCC--CCc--c-------------cCCCeEEEeeC-----ccEEEEee
Q psy14896        576 APEIGNQNWGKAMFCDPPTNYP--GVNYYWARDYF--PNF--V-------------EEDKRVFVSYD-----GALYFSAL  631 (813)
Q Consensus       576 ~~~~~~~g~~~~l~C~~~~~~p--~~~v~W~k~~~--~~~--~-------------~~~~~~~~~~~-----~~L~i~~~  631 (813)
                      ....+.+|+.++|.|.+ .+.|  .+.|.|+|++.  ...  .             ....|+.+..+     ++|+|.++
T Consensus        34 ~~~~v~~G~~v~L~C~~-~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v  112 (282)
T 1qok_A           34 GAELVRSGTSVKLSCTA-SGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLSSL  112 (282)
T ss_dssp             CCEEEETTCCEEEEEEE-ESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSC
T ss_pred             CCEEEeCCCeEEEEEec-cCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEECcC
Confidence            35567889999999998 5664  68999999642  110  0             11246665542     46999999


Q ss_pred             cccCCeeEEEEEEeeecCc--cccCceeeEEEccCCCccc------cccCC-CCCCCCCcCCCCCCeEEEEEEecCCCCC
Q psy14896        632 EQIDAGNYSCNVQSKVSDT--GRNGPFFPLKVFPHSNFQQ------LKFPN-NFPKTFPEAPKAGDKVRLECVAFGYPVP  702 (813)
Q Consensus       632 ~~~d~G~Y~C~a~n~~g~~--~~~~~~~~l~v~~~p~~~~------~~~p~-~~~~~~~~~~~~G~~v~l~C~~~g~P~p  702 (813)
                      +.+|+|.|.|.|.|..|..  ........|.|..+|....      ...+. ....+....+.+|++++|.|.+.+.| |
T Consensus       113 ~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~-~  191 (282)
T 1qok_A          113 TSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASSSV-S  191 (282)
T ss_dssp             CGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESSCC-S
T ss_pred             ChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecCCC-c
Confidence            9999999999999987621  1111234677776542000      00000 00112235688999999999999999 8


Q ss_pred             eEEEEe--CCcccC------------CCceee----ecceEEEECCCCCCCCEEEEEEEEcCCCc-eEEEEEEEEEc
Q psy14896        703 SYNWTR--RGSPLP------------RNAYFE----NFNRILTIPNVKVEDQGEYICRASNDRSA-LESSVTISIQA  760 (813)
Q Consensus       703 ~i~W~k--~g~~l~------------~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~-~~~~~~l~V~~  760 (813)
                      .|.|+|  +|..+.            ...++.    ....+|+|.+++.+|+|.|.|.|.|..+. -.....|.|..
T Consensus       192 ~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~  268 (282)
T 1qok_A          192 YMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLELKR  268 (282)
T ss_dssp             CCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC-
T ss_pred             eEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEEEEEec
Confidence            999999  666542            112221    23457999999999999999999986432 22345677754

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.72  E-value=6.9e-17  Score=161.33  Aligned_cols=188  Identities=18%  Similarity=0.150  Sum_probs=121.9

Q ss_pred             CCCceeecCCCccccccEEEEeeeccCC--CCeEEEeecc--cccccccc-------cccccCCCccEEee------CCe
Q psy14896        195 QPTDVVFDLSKRSILNDITLSCYAGGYP--NPSYEWFKED--YVQDRLVA-------NLIDPLSDKRFTLS------GGN  257 (813)
Q Consensus       195 ~p~~~~v~~g~~~~g~~v~l~C~~~g~P--~p~v~W~k~g--~~l~~~~~-------~~~~~~~~~~~~~~------~~~  257 (813)
                      +|..+.+.+|     ++|+|.|.+.|.|  .+.|.|||++  ..+.....       .........|+.+.      ..+
T Consensus         6 ~p~~~~v~~G-----~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~   80 (256)
T 1nqb_A            6 QSGAELVKPG-----ASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAY   80 (256)
T ss_dssp             ECCCEEECTT-----CCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEE
T ss_pred             CCCCeeecCC-----CcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEE
Confidence            3455677666     7799999999875  6799999964  22210000       00011123455543      136


Q ss_pred             EEEcCCccccCCeeEEEEeecCcee----eEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCcc-----eE
Q psy14896        258 LIINDPRQVEDRGSYHCKASNKFGS----IISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGV-----NY  328 (813)
Q Consensus       258 l~i~~~~~~~d~G~Y~C~a~n~~g~----~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~-----~v  328 (813)
                      |.|.+. +.+|+|.|+|.|.|..|.    ..+..+.|.|...+.+...+....+.+|+.++|.|.+ .+.|.+     .+
T Consensus        81 L~I~~v-~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~~~~v  158 (256)
T 1nqb_A           81 MQLSSL-TSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISCRS-SQSIVHSNGNTYL  158 (256)
T ss_dssp             EEECSC-CGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCCEEEEEEE-SSCCBCTTSCBCE
T ss_pred             EEECcC-ChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcEEEEecCCcEEEEeEe-cCcccccccceEE
Confidence            888885 899999999999998662    2234567777655544444455678899999999996 455554     99


Q ss_pred             EEee--ccccccc----------cCCccEEEcc---CccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccC
Q psy14896        329 YWAR--DYFPNFV----------EEDKRVFVSY---DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPH  391 (813)
Q Consensus       329 ~W~k--~~~~~~~----------~~~~~~~~~~---~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~  391 (813)
                      .|+|  ++..+..          ....|+....   .++|.|.+++.+|+|.|+|.|.|...  ...+....|.|..+
T Consensus       159 ~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~--~~fg~gt~l~V~~~  234 (256)
T 1nqb_A          159 EWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVP--YTFGGGTKLEIKRA  234 (256)
T ss_dssp             EEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSS--CEECCCEEEEECC-
T ss_pred             EEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCc--eEECCCEEEEEECC
Confidence            9999  5654310          1133444432   23799999999999999999997432  22234467777644

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.72  E-value=5.3e-17  Score=160.86  Aligned_cols=176  Identities=18%  Similarity=0.213  Sum_probs=116.5

Q ss_pred             ceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeeccc--ccccccc--cccccCCCccEEee----CCeEEEcC
Q psy14896        191 YFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDY--VQDRLVA--NLIDPLSDKRFTLS----GGNLIIND  262 (813)
Q Consensus       191 ~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~--~l~~~~~--~~~~~~~~~~~~~~----~~~l~i~~  262 (813)
                      .|+..|..+.+.+|     ++|+|.|.+.+.|.+.|.|||+..  .+.....  .........++...    +.+|.|.+
T Consensus         3 ~v~~~p~~~~v~~G-----~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~   77 (242)
T 2znx_A            3 VLTQSPATLSVTPG-----NSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINS   77 (242)
T ss_dssp             CEEEECSEEEECTT-----CCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESS
T ss_pred             cEEEcCCeEEEcCC-----CcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECC
Confidence            46666788888777     679999999999999999999742  1110000  00011123455543    23688888


Q ss_pred             CccccCCeeEEEEeecCceeeEeeeeEEeeeeecc------------cc-cCCCCceeecCCCeEEEecCCCCCC--cce
Q psy14896        263 PRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGE------------FN-LKRAPEIGNQNWGKAMFCDPPTNYP--GVN  327 (813)
Q Consensus       263 ~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~------------~~-~~~~~~~~~~~~~~~l~C~~~~~~p--~~~  327 (813)
                      . +.+|+|.|+|.|.|..+...+..+.|.|..++.            +. ..+....+.+|+.++|.|.+ .+.|  .+.
T Consensus        78 v-~~~D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~-~g~~~~~~~  155 (242)
T 2znx_A           78 V-ETEDFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSV-TGDSITSDY  155 (242)
T ss_dssp             C-CGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEE-ESSCGGGSC
T ss_pred             C-ChHHCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEE-EccccCCcc
Confidence            5 899999999999998665444556777766542            11 22334568889999999996 4444  589


Q ss_pred             EEEeecc--ccccc--------------cCCccEEEcc-----CccEEEeeeeecCCeeeEEEEeee
Q psy14896        328 YYWARDY--FPNFV--------------EEDKRVFVSY-----DGALYFSALEQIDAGNYSCNVQSK  373 (813)
Q Consensus       328 v~W~k~~--~~~~~--------------~~~~~~~~~~-----~~~L~i~~v~~~D~G~Y~C~a~n~  373 (813)
                      +.|+|++  ..+..              ....|+.+..     .++|.|.+++.+|+|.|+|.|.|.
T Consensus       156 v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  222 (242)
T 2znx_A          156 XSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG  222 (242)
T ss_dssp             EEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred             eeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence            9999963  32110              0134555542     237999999999999999999873

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A

Probab=99.72  E-value=1.3e-17  Score=152.81  Aligned_cols=116  Identities=12%  Similarity=0.180  Sum_probs=95.4

Q ss_pred             eEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcCCC-CCC--ccc
Q psy14896         39 SCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDGT-NLN--ELD  115 (813)
Q Consensus        39 ~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~dgs-~~~--~~~  115 (813)
                      .||+|+... ++|.+|+..|+.+||+||+|++++|++||.+++...  ...+||||.+.  ++.|.|+||+ ++.  | .
T Consensus         1 w~Y~~~~~~-~tw~~A~~~C~~~g~~La~i~s~~e~~~l~~~~~~~--~~~~WIGl~~~--~~~~~W~dg~~~~~~~~-~   74 (162)
T 1g1s_A            1 WTYHYSTKA-YSWNISRKYCQNRYTDLVAIQNKNEIDYLNKVLPYY--SSYYWIGIRKN--NKTWTWVGTKKALTNEA-E   74 (162)
T ss_dssp             CEEEEEEEE-ECHHHHHHHHHHHSSEECCCCCHHHHHHHHHHSCCC--TTCEEEEEEEE--TTEEEETTTCCBCCTTT-C
T ss_pred             CeEEEecCC-cCHHHHHHHHHhcCCEEeeeCCHHHHHHHHHHhccC--CCCEEEeEECC--CCCeEECCCCccCCccc-C
Confidence            489999984 999999999999999999999999999999998432  35799999986  6899999996 664  4 5


Q ss_pred             cccCCCCCCcc-cCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        116 AAFLPEPADNV-QRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       116 ~~~~~~p~~~~-~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      +|..++|++.. .++|+.|..........|.+..|.....|+|++.
T Consensus        75 ~W~~geP~~~~~~~~Cv~~~~~~~~~~~~W~d~~C~~~~~fICe~~  120 (162)
T 1g1s_A           75 NWADNEPNNKRNNEDCVEIYIKSPSAPGKWNDEHCLKKKHALCYTA  120 (162)
T ss_dssp             CBCTTCCCCTTSCCCEEEECTTCSSSTTCEEEECTTSCEEEEEEEC
T ss_pred             ccCCCCCCCCCCCcceEEEeccCCCCCCeEECCCCCCCCCEEEEeC
Confidence            77777998754 6799999653222245566999999999999995

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.72  E-value=2e-17  Score=165.55  Aligned_cols=179  Identities=16%  Similarity=0.188  Sum_probs=115.2

Q ss_pred             CCCceeccCCCceEEeCCCCCCCccEEEEccCCC--CCc-----------ccCCCeEEEe-----eCccEEEEeecccCC
Q psy14896        575 RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYF--PNF-----------VEEDKRVFVS-----YDGALYFSALEQIDA  636 (813)
Q Consensus       575 ~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~--~~~-----------~~~~~~~~~~-----~~~~L~i~~~~~~d~  636 (813)
                      +....+.+|+.++|.|.+ .+.|.+.|.|+|...  ...           .....|+.+.     .+.+|+|.+++.+|+
T Consensus        10 p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~Ds   88 (256)
T 3tf7_C           10 DARVTVSEGASLQLRCKY-SYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHRSDS   88 (256)
T ss_dssp             CSEEEEETTSCEEECCEE-ECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCCGGGC
T ss_pred             CceEEecCCCeEEEEEEe-CCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCCcccC
Confidence            344567889999999999 677999999998431  100           0112344442     123599999999999


Q ss_pred             eeEEEEEEeeecCcc-ccCceeeEEEccC-----------------CCccccccCCCCCCCCCcCCCCCCeEEEEEEecC
Q psy14896        637 GNYSCNVQSKVSDTG-RNGPFFPLKVFPH-----------------SNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFG  698 (813)
Q Consensus       637 G~Y~C~a~n~~g~~~-~~~~~~~l~v~~~-----------------p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g  698 (813)
                      |.|.|.|.|..+... .......|.|...                 +....+.     ..+....+.+|++++|.|.+.+
T Consensus        89 G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~-----~~p~~~~v~~G~~v~L~C~~~~  163 (256)
T 3tf7_C           89 AVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVT-----QSPRNKVTVTGENVTLSCRQTN  163 (256)
T ss_dssp             SEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEE-----ESCSEEEEETTCCEEECEEECS
T ss_pred             EEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEE-----ecCCEEEEeCCCcEEEEEEcCC
Confidence            999999998764211 1122345677651                 1111111     1222345679999999999998


Q ss_pred             CCCCeEEEEeCCc--ccCC---------------Ccee-----eecceEEEECCCCCCCCEEEEEEEEcCCCceEE--EE
Q psy14896        699 YPVPSYNWTRRGS--PLPR---------------NAYF-----ENFNRILTIPNVKVEDQGEYICRASNDRSALES--SV  754 (813)
Q Consensus       699 ~P~p~i~W~k~g~--~l~~---------------~~~~-----~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~--~~  754 (813)
                      . .|.+.|+|...  .+..               ..++     .....+|+|.+++.+|+|.|.|.|.|..|....  -.
T Consensus       164 ~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~fG~gt  242 (256)
T 3tf7_C          164 S-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPGQLYFGEGS  242 (256)
T ss_dssp             C-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETTEEEECCCE
T ss_pred             C-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCCccEECCCe
Confidence            7 67999999432  1100               0111     122457999999999999999999998775321  34


Q ss_pred             EEEEEc
Q psy14896        755 TISIQA  760 (813)
Q Consensus       755 ~l~V~~  760 (813)
                      .|.|..
T Consensus       243 ~l~v~~  248 (256)
T 3tf7_C          243 KLTVLE  248 (256)
T ss_dssp             EEEEEC
T ss_pred             EEEEEc
Confidence            566653

>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A

Probab=99.72  E-value=1.4e-17  Score=151.81  Aligned_cols=117  Identities=15%  Similarity=0.192  Sum_probs=95.2

Q ss_pred             eEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcCCC-CCC-cccc
Q psy14896         39 SCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDGT-NLN-ELDA  116 (813)
Q Consensus        39 ~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~dgs-~~~-~~~~  116 (813)
                      .||+|+... ++|.+|+..|+.+||+||+|+|++|++||.+++..  ....+||||.+.  ++.|.|+||+ ++. .+.+
T Consensus         1 w~Y~~~~~~-~tw~~A~~~C~~~g~~La~i~s~~e~~~l~~~~~~--~~~~~WIGl~~~--~~~~~W~dg~~~~~~~y~~   75 (157)
T 1g1t_A            1 WSYNTSTEA-MTYDEASAYCQQRYTHLVAIQNKEEIEYLNSILSY--SPSYYWIGIRKV--NNVWVWVGTQKPLTEEAKN   75 (157)
T ss_dssp             CEEEECSSC-BCHHHHHHHHHHHSSEECCCCSHHHHHHHHHHSCC--CTTCEEESEEEE--TTEEEETTTCCBCCTTTCC
T ss_pred             CceEeCCCc-cCHHHHHHHHHHCCCEEcccCCHHHHHHHHHHhcc--CCCCEEEEEECC--CCeeEEeCCCccCCcccCC
Confidence            389999984 99999999999999999999999999999998743  235799999975  6799999998 453 2357


Q ss_pred             ccCCCCCCcc-cCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        117 AFLPEPADNV-QRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       117 ~~~~~p~~~~-~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      |..++|++.. .++|+.|..........|.+..|.....|+|++.
T Consensus        76 W~~geP~~~~~~~~Cv~~~~~~~~~~~~W~d~~C~~~~~fICe~~  120 (157)
T 1g1t_A           76 WAPGEPNNRQKDEDCVEIYIKREKDVGMWNDERCSKKKLALCYTA  120 (157)
T ss_dssp             BCTTCCCCCSTTCCEEEECTTCSSSTTCEEEECTTSCBEEEEEEC
T ss_pred             CCCCcCCCCCCCCCceEEeCcCCCCCCccccCCCCCCcceEeCcC
Confidence            7777998754 6899999654322245566999999999999995

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.72  E-value=2.8e-17  Score=164.56  Aligned_cols=186  Identities=15%  Similarity=0.180  Sum_probs=116.9

Q ss_pred             CceeccCCCceEEeCCCCCCC--ccEEEEccCC--CCCc---------------ccCCCeEEEeeCc-----cEEEEeec
Q psy14896        577 PEIGNQNWGKAMFCDPPTNYP--GVNYYWARDY--FPNF---------------VEEDKRVFVSYDG-----ALYFSALE  632 (813)
Q Consensus       577 ~~~~~~g~~~~l~C~~~~~~p--~~~v~W~k~~--~~~~---------------~~~~~~~~~~~~~-----~L~i~~~~  632 (813)
                      +..+.+|+.++|.|.+ .+.+  .+.|.|||..  ....               .....|+.+..++     +|+|.+++
T Consensus        11 ~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   89 (256)
T 3umt_A           11 LELVKPGASVKISCKT-SGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLT   89 (256)
T ss_dssp             CEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             ceEEcCCCCEEEEEEE-ecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCC
Confidence            4557889999999998 5655  6899999843  1110               0123456555433     39999999


Q ss_pred             ccCCeeEEEEEEeeecC-ccccCceeeEEEccCCCc--------cccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCe
Q psy14896        633 QIDAGNYSCNVQSKVSD-TGRNGPFFPLKVFPHSNF--------QQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPS  703 (813)
Q Consensus       633 ~~d~G~Y~C~a~n~~g~-~~~~~~~~~l~v~~~p~~--------~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~  703 (813)
                      .+|+|.|.|.|.|..+. .........|.|...+..        .....|.....+....+.+|++++|.|.+.+.|.|.
T Consensus        90 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~  169 (256)
T 3umt_A           90 SEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDIGSN  169 (256)
T ss_dssp             GGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCCTTC
T ss_pred             cccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCCCcE
Confidence            99999999999987220 011122356777752110        000000000112235688999999999999999999


Q ss_pred             EEEEeC--CcccC------------CCcee----eecceEEEECCCCCCCCEEEEEEEEcCCCce-EEEEEEEEEcCCc
Q psy14896        704 YNWTRR--GSPLP------------RNAYF----ENFNRILTIPNVKVEDQGEYICRASNDRSAL-ESSVTISIQAEPN  763 (813)
Q Consensus       704 i~W~k~--g~~l~------------~~~~~----~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~~~P~  763 (813)
                      |.|+|+  +..+.            ...++    .....+|+|.+++.+|+|.|.|.|.|..+.. .....|.|..++.
T Consensus       170 v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~~~~~  248 (256)
T 3umt_A          170 LNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIKRAAA  248 (256)
T ss_dssp             EEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC----
T ss_pred             EEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEECCCc
Confidence            999995  22221            01122    1223469999999999999999999965433 2357788876553

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.72  E-value=9.5e-18  Score=163.73  Aligned_cols=170  Identities=18%  Similarity=0.290  Sum_probs=115.5

Q ss_pred             CceeccCCCceEEeCCCCCCC--ccEEEEccCCCCC----cc------c---------CCCeEEEeeC---c--cEEEEe
Q psy14896        577 PEIGNQNWGKAMFCDPPTNYP--GVNYYWARDYFPN----FV------E---------EDKRVFVSYD---G--ALYFSA  630 (813)
Q Consensus       577 ~~~~~~g~~~~l~C~~~~~~p--~~~v~W~k~~~~~----~~------~---------~~~~~~~~~~---~--~L~i~~  630 (813)
                      +..+.+|+.++|.|.+ .+.+  .+.|.|+|++...    ..      .         ...|+.+..+   +  +|+|.+
T Consensus         9 ~~~~~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   87 (220)
T 1pz5_B            9 GGLVQPGGSMKLSCVA-SGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMNN   87 (220)
T ss_dssp             CEEECTTCCEEEEEEE-ESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             CEEEcCCCeEEEEEEE-cCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEcc
Confidence            4567889999999998 5555  6899999964210    00      0         0246665532   2  799999


Q ss_pred             ecccCCeeEEEEEEeeecCccccCceeeEEEccC----CCccccccCCCCCCCCCcCCCCCCeEEEEEEecCC-CCC-eE
Q psy14896        631 LEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPH----SNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGY-PVP-SY  704 (813)
Q Consensus       631 ~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~----p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~-P~p-~i  704 (813)
                      ++.+|+|.|.|.+.|..+..........|.|...    |.+..  .+.      ...+.+|+.++|.|.+.|. |.| .|
T Consensus        88 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~--~~~------~~~~~~g~~v~L~C~~~g~~P~p~~v  159 (220)
T 1pz5_B           88 LRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYP--LVP------GCSDTSGSSVTLGCLVKGYFPEPVTV  159 (220)
T ss_dssp             CCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEE--ECC------CSCCSCSSSEEEEEEEEEEBSSCCEE
T ss_pred             CCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEE--ccc------ccccCCCCcEEEEEEEEEEeCCCeEE
Confidence            9999999999999987532111112356777632    22211  111      1345789999999999987 988 99


Q ss_pred             EEEeCCcccC----CCc---eeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEE
Q psy14896        705 NWTRRGSPLP----RNA---YFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI  756 (813)
Q Consensus       705 ~W~k~g~~l~----~~~---~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l  756 (813)
                      +|+|++..+.    ...   ......+.|.|.++..+| |.|+|.|.|..|..++++.+
T Consensus       160 ~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~  217 (220)
T 1pz5_B          160 KWNYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIKEI  217 (220)
T ss_dssp             EEGGGTCCTTEEECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred             EEecCCcccceEEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeeecC
Confidence            9999987421    100   011124679999998877 99999999999987766543

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.72  E-value=4.2e-17  Score=163.31  Aligned_cols=170  Identities=19%  Similarity=0.258  Sum_probs=110.0

Q ss_pred             CceeccCCCceEEeCCCCCC--CccEEEEccCCC--CCc----------ccCCCeEEEeeCc---cEEEEeecccCCeeE
Q psy14896        577 PEIGNQNWGKAMFCDPPTNY--PGVNYYWARDYF--PNF----------VEEDKRVFVSYDG---ALYFSALEQIDAGNY  639 (813)
Q Consensus       577 ~~~~~~g~~~~l~C~~~~~~--p~~~v~W~k~~~--~~~----------~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y  639 (813)
                      ...+.+|+.++|.|.+ .+.  |.+.+.|+|++.  ...          .....|+.+..++   +|.|.+++.+|+|.|
T Consensus        11 ~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y   89 (256)
T 3ux9_B           11 SVSGAPGQRVTISCSG-SSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEADY   89 (256)
T ss_dssp             EEEECTTCCEEEEEEC-CTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred             cEEEcCCCcEEEEEec-CCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCEEE
Confidence            3567889999999999 455  788999999531  110          0123455555433   599999999999999


Q ss_pred             EEEEEeeecCccccCceeeEEEccCCCccccc------------cCCCCCCCCCcCCCCCCeEEEEEEecCCC--CCeEE
Q psy14896        640 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLK------------FPNNFPKTFPEAPKAGDKVRLECVAFGYP--VPSYN  705 (813)
Q Consensus       640 ~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~------------~p~~~~~~~~~~~~~G~~v~l~C~~~g~P--~p~i~  705 (813)
                      .|.|.|..+..........|.|..++......            .+..+.......+.+|++++|.|.+.+.|  .+.+.
T Consensus        90 ~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~  169 (256)
T 3ux9_B           90 YCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCAASGFTFSSYAMS  169 (256)
T ss_dssp             EEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEE
T ss_pred             EEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEEEeCCcccccEEE
Confidence            99999865432222334567777655211000            00000011124578999999999999877  78999


Q ss_pred             EEeC--CcccC------CC-----------ceee------ecceEEEECCCCCCCCEEEEEEEEcCC
Q psy14896        706 WTRR--GSPLP------RN-----------AYFE------NFNRILTIPNVKVEDQGEYICRASNDR  747 (813)
Q Consensus       706 W~k~--g~~l~------~~-----------~~~~------~~~~~L~i~~v~~~d~G~Y~C~a~N~~  747 (813)
                      |+|+  +..+.      ..           .++.      ....+|+|.+++.+|+|.|.|.|.|..
T Consensus       170 W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  236 (256)
T 3ux9_B          170 WVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYIDF  236 (256)
T ss_dssp             EEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             EEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence            9997  33221      00           0111      123469999999999999999999963

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.72  E-value=1e-16  Score=160.48  Aligned_cols=186  Identities=17%  Similarity=0.171  Sum_probs=119.3

Q ss_pred             CCceeecCCCccccccEEEEeeeccCC--CCeEEEeecc--cccccccc------cccccCCCccEEee------CCeEE
Q psy14896        196 PTDVVFDLSKRSILNDITLSCYAGGYP--NPSYEWFKED--YVQDRLVA------NLIDPLSDKRFTLS------GGNLI  259 (813)
Q Consensus       196 p~~~~v~~g~~~~g~~v~l~C~~~g~P--~p~v~W~k~g--~~l~~~~~------~~~~~~~~~~~~~~------~~~l~  259 (813)
                      |....+.+|     ++|+|.|.+.|.|  .+.|.|||++  ..+.....      .........|+.+.      ..+|.
T Consensus         7 p~~~~v~~G-----~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   81 (257)
T 1f3r_B            7 SGPGLVRPS-----ETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLK   81 (257)
T ss_dssp             ECCSEECTT-----SEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEE
T ss_pred             CCCccccCC-----ceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEE
Confidence            334556565     7799999999875  7899999973  22211000      00011123455543      23788


Q ss_pred             EcCCccccCCeeEEEEeecCce--------eeEeeeeEEeeeeec-------------cccc--CCCCceeecCCCeEEE
Q psy14896        260 INDPRQVEDRGSYHCKASNKFG--------SIISESVQLAFGFIG-------------EFNL--KRAPEIGNQNWGKAMF  316 (813)
Q Consensus       260 i~~~~~~~d~G~Y~C~a~n~~g--------~~~s~~~~l~v~~~~-------------~~~~--~~~~~~~~~~~~~~l~  316 (813)
                      |.+. +.+|+|.|+|.|.|..|        ...+..+.|.|...+             ++.+  .+....+.+|+.++|.
T Consensus        82 I~~v-~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~  160 (257)
T 1f3r_B           82 MNSL-QTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLS  160 (257)
T ss_dssp             EESC-CTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEE
T ss_pred             ECCC-CcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEE
Confidence            8885 89999999999999854        112345667776542             1112  2334457789999999


Q ss_pred             ecCCCCCCcceEEEee--ccccccc----------cCCccEEEcc---CccEEEeeeeecCCeeeEEEEeeeccccCCCC
Q psy14896        317 CDPPTNYPGVNYYWAR--DYFPNFV----------EEDKRVFVSY---DGALYFSALEQIDAGNYSCNVQSKVSDTGRNG  381 (813)
Q Consensus       317 C~~~~~~p~~~v~W~k--~~~~~~~----------~~~~~~~~~~---~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s  381 (813)
                      |.+ .+.|.+.+.|+|  +|..+..          ....|+.+..   ..+|.|.+++.+|+|.|+|.|.|..   ...+
T Consensus       161 C~~-~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~---~~~g  236 (257)
T 1f3r_B          161 CKG-SQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNG---YTFG  236 (257)
T ss_dssp             EEC-SSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSS---EEEC
T ss_pred             EEE-CCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCC---CeEC
Confidence            996 566778999999  5554311          1134554432   2379999999999999999999864   1222


Q ss_pred             CceeeEEccC
Q psy14896        382 PFFPLKVFPH  391 (813)
Q Consensus       382 ~~~~l~v~~~  391 (813)
                      ....|.|...
T Consensus       237 ~gt~l~V~~~  246 (257)
T 1f3r_B          237 AGTKLELKAA  246 (257)
T ss_dssp             CCCEECCSSS
T ss_pred             CCEEEEEeCC
Confidence            3356666544

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.72  E-value=2.2e-17  Score=164.92  Aligned_cols=188  Identities=16%  Similarity=0.160  Sum_probs=119.7

Q ss_pred             CCCceeccCCCceEEeCCCCCCC--ccEEEEccCC--CCCc---------------ccCCCeEEEeeCc-----cEEEEe
Q psy14896        575 RAPEIGNQNWGKAMFCDPPTNYP--GVNYYWARDY--FPNF---------------VEEDKRVFVSYDG-----ALYFSA  630 (813)
Q Consensus       575 ~~~~~~~~g~~~~l~C~~~~~~p--~~~v~W~k~~--~~~~---------------~~~~~~~~~~~~~-----~L~i~~  630 (813)
                      +.+..+.+|+.++|.|.+ .+.+  .+.|.|+|..  ....               .....|+.+..++     +|+|.+
T Consensus         8 p~~~~v~~G~~v~L~C~~-~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   86 (253)
T 3uzq_A            8 SGAELVKPGASVRLSCTA-SGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLSS   86 (253)
T ss_dssp             CCCEEECTTCCEEEEEEE-CSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             CCCeeecCCCcEEEEEEe-eCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeCC
Confidence            445678899999999998 5644  7899999932  1110               0112455555433     399999


Q ss_pred             ecccCCeeEEEEEEeeecCccccCceeeEEEccCCCcc-------ccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCC-
Q psy14896        631 LEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQ-------QLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVP-  702 (813)
Q Consensus       631 ~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~-------~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p-  702 (813)
                      ++.+|+|.|.|.|.|..+...  .....|.|...+...       ....|.....+....+.+|++++|.|.+.+.|.| 
T Consensus        87 v~~~DsG~Y~C~~~~~~~~~~--~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~  164 (253)
T 3uzq_A           87 LTSGDTAVYYCSRGWEGFAYW--GQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVDRY  164 (253)
T ss_dssp             CCGGGCEEEEEEECSSSCCEE--CCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCEET
T ss_pred             CCcccCEEEEEEEeeCCccEE--CCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCccccC
Confidence            999999999999998554321  123567776421000       0000000111223568899999999999999887 


Q ss_pred             ---eEEEEeC--CcccC------------CCceee----ecceEEEECCCCCCCCEEEEEEEEcCCCce-EEEEEEEEEc
Q psy14896        703 ---SYNWTRR--GSPLP------------RNAYFE----NFNRILTIPNVKVEDQGEYICRASNDRSAL-ESSVTISIQA  760 (813)
Q Consensus       703 ---~i~W~k~--g~~l~------------~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~~  760 (813)
                         .+.|+|+  +..+.            ...++.    ....+|+|.+++.+|+|.|.|.|.|..+.. ..-..|.|..
T Consensus       165 ~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v~~  244 (253)
T 3uzq_A          165 GNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLEIKR  244 (253)
T ss_dssp             TEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECC
T ss_pred             CCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEEEEEcC
Confidence               9999995  33221            011121    123479999999999999999999975543 3356788877


Q ss_pred             CCccc
Q psy14896        761 EPNFT  765 (813)
Q Consensus       761 ~P~~~  765 (813)
                      .+.+.
T Consensus       245 ~~~~~  249 (253)
T 3uzq_A          245 PLEHH  249 (253)
T ss_dssp             C----
T ss_pred             CCCCc
Confidence            66554

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.72  E-value=1.9e-17  Score=163.72  Aligned_cols=181  Identities=17%  Similarity=0.231  Sum_probs=120.3

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeeccc--cccccc--ccccccCCCccEEee----CCeEEE
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDY--VQDRLV--ANLIDPLSDKRFTLS----GGNLII  260 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~--~l~~~~--~~~~~~~~~~~~~~~----~~~l~i  260 (813)
                      .+.+...|..+.+.+|     ++++|.|.+.+.|.+.|.|||++.  ......  ..........++...    +.+|.|
T Consensus        24 ~~~v~~~p~~~~v~~G-----~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I   98 (237)
T 3sob_L           24 DIQMTQSPSSLSASVG-----DRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTI   98 (237)
T ss_dssp             CCCEEEECSEEEEETT-----CCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEE
T ss_pred             cceEEeCCCeEEEeCC-----CcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEE
Confidence            3556777888888777     679999999998999999999541  110000  000111223455433    346888


Q ss_pred             cCCccccCCeeEEEEeecCceeeEeeeeEEeeee---ecccccCCCCceeecCCCeEEEecCCCCCC-cceEEEeecccc
Q psy14896        261 NDPRQVEDRGSYHCKASNKFGSIISESVQLAFGF---IGEFNLKRAPEIGNQNWGKAMFCDPPTNYP-GVNYYWARDYFP  336 (813)
Q Consensus       261 ~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~---~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p-~~~v~W~k~~~~  336 (813)
                      .+. +.+|+|.|+|.|.|..+......+.|.|..   +|.+.+.........|+.++|.|.+..+.| .++++|+|||.+
T Consensus        99 ~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~  177 (237)
T 3sob_L           99 SSL-QPEDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNAL  177 (237)
T ss_dssp             SSC-CGGGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred             CCC-ChhhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCC
Confidence            885 899999999999987765445556666643   233333344444456778999999765566 689999999987


Q ss_pred             cccc--CCccEEEccCc------cEEEeeeeecCCeeeEEEEeeecc
Q psy14896        337 NFVE--EDKRVFVSYDG------ALYFSALEQIDAGNYSCNVQSKVS  375 (813)
Q Consensus       337 ~~~~--~~~~~~~~~~~------~L~i~~v~~~D~G~Y~C~a~n~~g  375 (813)
                      +...  .........++      .|.|..+..+|+|.|+|.|.|...
T Consensus       178 ~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  224 (237)
T 3sob_L          178 QSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGL  224 (237)
T ss_dssp             CCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTC
T ss_pred             CCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCC
Confidence            5321  11111112222      588888999999999999999764

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.72  E-value=3.2e-18  Score=166.53  Aligned_cols=181  Identities=14%  Similarity=0.198  Sum_probs=110.7

Q ss_pred             CCCceeeCCCcee--ecCCCccccccEEEEeeeccC---CC-CeEEEeecccccccccccccccCCCccEEeeCCeEEEc
Q psy14896        188 RGPYFIKQPTDVV--FDLSKRSILNDITLSCYAGGY---PN-PSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIIN  261 (813)
Q Consensus       188 ~~P~~~~~p~~~~--v~~g~~~~g~~v~l~C~~~g~---P~-p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~  261 (813)
                      .+|.+...|....  +.+|     ++++|.|.+.|.   |. +.|+|||++..+............+.++.. .++|.|.
T Consensus         8 ~~p~v~~~pp~~~~~v~~G-----~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~-~~~L~I~   81 (218)
T 2rgs_A            8 GGPSVFIFPPNIKDVLMIS-----LTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRV-VSTLPIQ   81 (218)
T ss_dssp             -CCEEEEECCCHHHHHCTT-----SCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEE-EEEEECC
T ss_pred             CCCEEEEECcCHHHhhccC-----CCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEE-EEEEEEc
Confidence            3566655555443  5555     779999999886   43 799999999766322110000111222222 3457776


Q ss_pred             CCccccCCeeEEEEeecCceee-EeeeeEE--eeeeecccccCCCCceeecCCCeEEEecCCCCCCcc-eEEEeeccccc
Q psy14896        262 DPRQVEDRGSYHCKASNKFGSI-ISESVQL--AFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGV-NYYWARDYFPN  337 (813)
Q Consensus       262 ~~~~~~d~G~Y~C~a~n~~g~~-~s~~~~l--~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~-~v~W~k~~~~~  337 (813)
                      + ++.+|+|.|+|.|.|..+.. ....+.+  .+..+|.+.+.........|+.++|.|.+.+.+|.+ +|+|+|||.++
T Consensus        82 ~-~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~  160 (218)
T 2rgs_A           82 H-QDWMSGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTE  160 (218)
T ss_dssp             H-HHHHTTCCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred             H-HHcCCCCeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEec
Confidence            6 58999999999999987643 1223322  334445554443333333578889999975446765 99999999875


Q ss_pred             cccCCccEEEccCccEEE------eeeeecCCeeeEEEEeeecc
Q psy14896        338 FVEEDKRVFVSYDGALYF------SALEQIDAGNYSCNVQSKVS  375 (813)
Q Consensus       338 ~~~~~~~~~~~~~~~L~i------~~v~~~D~G~Y~C~a~n~~g  375 (813)
                      ......+.....+|++.+      .....+|.|.|+|.|.|...
T Consensus       161 ~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l  204 (218)
T 2rgs_A          161 ENYKDTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGL  204 (218)
T ss_dssp             CCEEECCCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTS
T ss_pred             cCceecccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCC
Confidence            221122233355665444      33334469999999999764

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.72  E-value=1.1e-16  Score=158.50  Aligned_cols=176  Identities=17%  Similarity=0.257  Sum_probs=118.3

Q ss_pred             ceeeCCCceeecCCCccccccEEEEeeeccCC----CCeEEEeecc--cccccccc--cccccCCCccEEee--C--CeE
Q psy14896        191 YFIKQPTDVVFDLSKRSILNDITLSCYAGGYP----NPSYEWFKED--YVQDRLVA--NLIDPLSDKRFTLS--G--GNL  258 (813)
Q Consensus       191 ~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P----~p~v~W~k~g--~~l~~~~~--~~~~~~~~~~~~~~--~--~~l  258 (813)
                      .|+..|.++.+.+|     ++|+|.|.+.+.|    .+.|.|||++  ..+.....  .........++...  +  .+|
T Consensus         3 ~v~~~p~~~~v~~G-----~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L   77 (240)
T 1moe_A            3 VLTQSPASLAVSLG-----QRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTL   77 (240)
T ss_dssp             CEEEECSEEEECTT-----SCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEE
T ss_pred             ceEeeCCeEEecCC-----CCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEE
Confidence            45666777888777     6799999999988    7899999973  22110000  00111123455543  1  267


Q ss_pred             EEcCCccccCCeeEEEEeecCceeeEeeeeEEeeeeec-----c-cccCCCCceeecCCCeEEEecCCCCCC--cceEEE
Q psy14896        259 IINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIG-----E-FNLKRAPEIGNQNWGKAMFCDPPTNYP--GVNYYW  330 (813)
Q Consensus       259 ~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~-----~-~~~~~~~~~~~~~~~~~l~C~~~~~~p--~~~v~W  330 (813)
                      .|.+. +.+|+|.|+|.|.|..+...+..+.|.|...+     . +...+....+.+|+.++|.|.+ .+.|  .+.+.|
T Consensus        78 ~I~~v-~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~-~g~p~~~~~v~W  155 (240)
T 1moe_A           78 IIDPV-EADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTA-SGFNIKDTYMHW  155 (240)
T ss_dssp             EESSC-CGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEE-ESSCGGGSCEEE
T ss_pred             EEcCC-ChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEE-cCccCCCCEEEE
Confidence            88775 89999999999999876544556677776543     2 2223456678889999999996 4555  469999


Q ss_pred             eec--cccccc---------------cCCccEEEccC-----ccEEEeeeeecCCeeeEEEEeee
Q psy14896        331 ARD--YFPNFV---------------EEDKRVFVSYD-----GALYFSALEQIDAGNYSCNVQSK  373 (813)
Q Consensus       331 ~k~--~~~~~~---------------~~~~~~~~~~~-----~~L~i~~v~~~D~G~Y~C~a~n~  373 (813)
                      +|+  +.....               ....|+.+..+     .+|.|.+++.+|+|.|+|.|.+.
T Consensus       156 ~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  220 (240)
T 1moe_A          156 VKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFGY  220 (240)
T ss_dssp             EEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECST
T ss_pred             EEECCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEec
Confidence            997  332110               01335555432     37999999999999999999853

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.71  E-value=1.6e-17  Score=165.95  Aligned_cols=180  Identities=18%  Similarity=0.207  Sum_probs=117.4

Q ss_pred             CceeeCCCceeecCCCccccccEEEEeeeccCC-----CCeEEEeeccc--ccccccc--cccccCCCccEEee-C---C
Q psy14896        190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYP-----NPSYEWFKEDY--VQDRLVA--NLIDPLSDKRFTLS-G---G  256 (813)
Q Consensus       190 P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P-----~p~v~W~k~g~--~l~~~~~--~~~~~~~~~~~~~~-~---~  256 (813)
                      +.++..|..+.+.+|     ++|+|.|.+.+.|     .+.|.|||++.  .+.....  .........++... +   .
T Consensus        35 ~~v~~~p~~~~v~~G-----~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  109 (252)
T 3bkj_L           35 VLMTQTPLSLPVNLG-----EQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDF  109 (252)
T ss_dssp             CCEEEECSEEEECTT-----SCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEE
T ss_pred             cEEEeCCceEEEeCC-----CcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEE
Confidence            456666788888777     6799999999887     68999999762  1100000  00011123455443 2   2


Q ss_pred             eEEEcCCccccCCeeEEEEeecCceeeEeeeeEEeeee---ecccccCCCCceeecCCCeEEEecCCCCCCcc-eEEEee
Q psy14896        257 NLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGF---IGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGV-NYYWAR  332 (813)
Q Consensus       257 ~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~---~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~-~v~W~k  332 (813)
                      +|.|.+. +.+|+|.|+|.|.|..+...+..+.|.|..   +|.+.+.........|+.++|.|.+.+..|.+ +|+|+|
T Consensus       110 ~L~I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k  188 (252)
T 3bkj_L          110 TLRISRV-EAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKI  188 (252)
T ss_dssp             EEEESSC-CGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEE
T ss_pred             EEEECCC-CcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEE
Confidence            6888885 899999999999998664434445666643   23333333333344688899999975545664 899999


Q ss_pred             cccccccc--CCccEEEccCc------cEEEeeeeecCCeeeEEEEeeecc
Q psy14896        333 DYFPNFVE--EDKRVFVSYDG------ALYFSALEQIDAGNYSCNVQSKVS  375 (813)
Q Consensus       333 ~~~~~~~~--~~~~~~~~~~~------~L~i~~v~~~D~G~Y~C~a~n~~g  375 (813)
                      ||+++...  .........++      .|.|.++..+|+|.|+|.|.|...
T Consensus       189 ~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  239 (252)
T 3bkj_L          189 DGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS  239 (252)
T ss_dssp             TTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTC
T ss_pred             CCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCC
Confidence            99874321  00111122333      489999999999999999998654

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.71  E-value=3e-17  Score=159.19  Aligned_cols=177  Identities=20%  Similarity=0.258  Sum_probs=114.8

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccCC---CCeEEEeecc--cccccccc--cccccCCCccEEee--C--CeEEE
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYP---NPSYEWFKED--YVQDRLVA--NLIDPLSDKRFTLS--G--GNLII  260 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P---~p~v~W~k~g--~~l~~~~~--~~~~~~~~~~~~~~--~--~~l~i  260 (813)
                      ++. |..+.+.+|     ++++|.|.+.|.|   .+.|.|||++  ..+.....  .........++...  +  .+|.|
T Consensus         4 v~~-p~~~~v~~G-----~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I   77 (212)
T 1q0x_L            4 VTQ-ESALTTSPG-----ETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTI   77 (212)
T ss_dssp             EEE-CSEEEECTT-----CCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEE
T ss_pred             EEC-CCeEeecCC-----CCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEE
Confidence            445 777777777     7799999999877   4799999984  22210000  00011122444432  2  26888


Q ss_pred             cCCccccCCeeEEEEeecCceeeEeeeeEEeee----eecccccCCCCceeecCCCeEEEecCCCCCCcc-eEEEeeccc
Q psy14896        261 NDPRQVEDRGSYHCKASNKFGSIISESVQLAFG----FIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGV-NYYWARDYF  335 (813)
Q Consensus       261 ~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~----~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~-~v~W~k~~~  335 (813)
                      .+. +.+|+|.|+|.|.|..+...+..+.|.|.    .+|.+.+.........|+.++|.|.+.+..|++ .|+|+|||+
T Consensus        78 ~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~  156 (212)
T 1q0x_L           78 TGA-QTEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGT  156 (212)
T ss_dssp             SSC-CGGGCEEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred             CCC-CccCCEEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCE
Confidence            885 89999999999999877544555666663    233343333333444677889999975445554 999999998


Q ss_pred             cccccCC-ccEEEccCc------cEEEeeeeecCCeeeEEEEeeecc
Q psy14896        336 PNFVEED-KRVFVSYDG------ALYFSALEQIDAGNYSCNVQSKVS  375 (813)
Q Consensus       336 ~~~~~~~-~~~~~~~~~------~L~i~~v~~~D~G~Y~C~a~n~~g  375 (813)
                      ++..... .......++      .|.|..+..+|+|.|+|.|.|...
T Consensus       157 ~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  203 (212)
T 1q0x_L          157 PVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGH  203 (212)
T ss_dssp             EECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTE
T ss_pred             eCCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCc
Confidence            7432110 111222333      588999999999999999998754

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.71  E-value=4.3e-17  Score=161.47  Aligned_cols=169  Identities=17%  Similarity=0.152  Sum_probs=110.4

Q ss_pred             CCCceeccCCCceEEeCCCCCCCccEEEEccCCC--CC--cc--------cCCCeEEEeeC---ccEEEEeecccCCeeE
Q psy14896        575 RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYF--PN--FV--------EEDKRVFVSYD---GALYFSALEQIDAGNY  639 (813)
Q Consensus       575 ~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~--~~--~~--------~~~~~~~~~~~---~~L~i~~~~~~d~G~Y  639 (813)
                      +....+.+|+.++|.|.+ .+.|.+.|.|+|+..  ..  .+        ....|+.+..+   .+|+|.+++.+|+|.|
T Consensus         8 p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y   86 (242)
T 2znx_A            8 PATLSVTPGNSVSLSCRA-SQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMY   86 (242)
T ss_dssp             CSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             CCeEEEcCCCcEEEEEEe-CCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHHCEEE
Confidence            344567889999999999 688889999999632  11  01        12346655433   3699999999999999


Q ss_pred             EEEEEeeecCccccCceeeEEEccCCCccc-----cccCCCCCCCCCcCCCCCCeEEEEEEecCCC--CCeEEEEeC--C
Q psy14896        640 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQ-----LKFPNNFPKTFPEAPKAGDKVRLECVAFGYP--VPSYNWTRR--G  710 (813)
Q Consensus       640 ~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~-----~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P--~p~i~W~k~--g  710 (813)
                      .|.|.|..+...  .....|.|..+|....     ...+..........+.+|++++|.|.+.|.|  .+.|.|+|+  |
T Consensus        87 ~C~~~n~~~~~~--~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~~  164 (242)
T 2znx_A           87 FCQQSNSXPYTF--GGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRKFPG  164 (242)
T ss_dssp             EEEECSSSSCEE--CCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEECTT
T ss_pred             EEeEecCCceEE--CCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEeeCCC
Confidence            999998754211  1235678877653100     0000000011124588999999999999887  478999995  3


Q ss_pred             cccC-------C---------Cceeee------cceEEEECCCCCCCCEEEEEEEEcC
Q psy14896        711 SPLP-------R---------NAYFEN------FNRILTIPNVKVEDQGEYICRASND  746 (813)
Q Consensus       711 ~~l~-------~---------~~~~~~------~~~~L~i~~v~~~d~G~Y~C~a~N~  746 (813)
                      ..+.       .         ..++..      ...+|+|.+++.+|+|.|.|.|.|.
T Consensus       165 ~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  222 (242)
T 2znx_A          165 NRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG  222 (242)
T ss_dssp             SCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred             CCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence            3321       0         122221      2358999999999999999999984

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.71  E-value=1.1e-17  Score=167.16  Aligned_cols=167  Identities=17%  Similarity=0.155  Sum_probs=113.1

Q ss_pred             CCceeccCCCceEEeCCCCCCC-----ccEEEEccCCCCCc------------ccCCCeEEEeeCc---cEEEEeecccC
Q psy14896        576 APEIGNQNWGKAMFCDPPTNYP-----GVNYYWARDYFPNF------------VEEDKRVFVSYDG---ALYFSALEQID  635 (813)
Q Consensus       576 ~~~~~~~g~~~~l~C~~~~~~p-----~~~v~W~k~~~~~~------------~~~~~~~~~~~~~---~L~i~~~~~~d  635 (813)
                      ....+.+|+.++|.|.+ .+.|     .+.|.|+|++....            .....|+.+..++   +|+|.+++.+|
T Consensus        42 ~~~~v~~G~~v~L~C~~-~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D  120 (252)
T 3bkj_L           42 LSLPVNLGEQASISCRS-SQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRISRVEAED  120 (252)
T ss_dssp             SEEEECTTSCEEEEEEE-SSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             ceEEEeCCCcEEEEEEc-CCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEECCCCccc
Confidence            44567889999999999 6766     68999999652110            0113456555433   69999999999


Q ss_pred             CeeEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCC-CCC-eEEEEeCCccc
Q psy14896        636 AGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGY-PVP-SYNWTRRGSPL  713 (813)
Q Consensus       636 ~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~-P~p-~i~W~k~g~~l  713 (813)
                      +|.|.|.|.|..+....  ....|.|...+....+..     ......+.+|+.++|.|.+.|. |++ .|+|+|+|..+
T Consensus       121 ~G~Y~C~~~~~~~~~~~--~~~~l~V~~~~~~P~v~~-----~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~  193 (252)
T 3bkj_L          121 LGVYYCFQASLVPLTFG--AGTKLELKRADAAPTVSI-----FPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER  193 (252)
T ss_dssp             CEEEEEEECSBSSCEEC--CCEEEEECCCCBCCEEEE-----ECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred             CEEEEEEEEcCCccEEC--CCEEEEEeCCCcCcEEEE-----eCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCeec
Confidence            99999999987653211  124567754221111111     0001223479999999999984 544 79999999988


Q ss_pred             CCC-ce---e-e------ecceEEEECCCCCCCCEEEEEEEEcCCCce
Q psy14896        714 PRN-AY---F-E------NFNRILTIPNVKVEDQGEYICRASNDRSAL  750 (813)
Q Consensus       714 ~~~-~~---~-~------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~  750 (813)
                      ..+ ..   . .      ...+.|.|.++..+|+|.|+|.|.|.....
T Consensus       194 ~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  241 (252)
T 3bkj_L          194 QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  241 (252)
T ss_dssp             CSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             CCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCC
Confidence            665 11   1 0      112469999999999999999999986554

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.71  E-value=1.8e-17  Score=161.02  Aligned_cols=181  Identities=15%  Similarity=0.217  Sum_probs=132.0

Q ss_pred             ecccccccCCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEee---CccEEEEeecccCCeeEEEEE
Q psy14896        567 FIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSY---DGALYFSALEQIDAGNYSCNV  643 (813)
Q Consensus       567 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~a  643 (813)
                      ++|.+ ..+....+.+|+.++|.|.+ .|.|.+.|.|+|+|.++......++.+..   .++|.|.++..+|+|.|+|.|
T Consensus        18 ~~P~~-~~p~~~~~~~G~~v~l~C~~-~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a   95 (215)
T 3mtr_A           18 YAPKL-QGPVAVYTWEGNQVNITCEV-FAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTA   95 (215)
T ss_dssp             EEEEE-ECCSEEEECTTCCEEEEEEE-EEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEE
T ss_pred             cCCcc-cCCceEEEECCCCEEEEEEE-eecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEE
Confidence            45555 33344667889999999999 79999999999999875544445665553   356999999999999999999


Q ss_pred             EeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEec----CCCCC--eEEEEeCCcccCCCc
Q psy14896        644 QSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF----GYPVP--SYNWTRRGSPLPRNA  717 (813)
Q Consensus       644 ~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~----g~P~p--~i~W~k~g~~l~~~~  717 (813)
                      .|..|...   ..+.|.|..+|......          .....+..+.|.|...    |.|.+  .+.|.+++...-...
T Consensus        96 ~n~~g~~~---~~~~l~v~~~P~~p~~~----------~~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~~  162 (215)
T 3mtr_A           96 VNRIGQES---LEFILVQADTPSSPSID----------QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSK  162 (215)
T ss_dssp             ECSSCEEE---EEEEEEECCCCCCCEEE----------EEEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEEE
T ss_pred             EECCCceE---EEEEEEECCCCCCCcce----------EEEEecceEEEEEecCCccCCCceEEEEEEEEECCCCccccc
Confidence            99998753   34778887766443210          1123567899999742    33443  488998886532222


Q ss_pred             eee----ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCC
Q psy14896        718 YFE----NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEP  762 (813)
Q Consensus       718 ~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P  762 (813)
                      ...    .....|.|.++...|.|.|+|.|.|.+|....+..+.|..+|
T Consensus       163 ~~~~~~~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~T~p  211 (215)
T 3mtr_A          163 WYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQP  211 (215)
T ss_dssp             EEEHHHHHHHTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEECCC
T ss_pred             ccccccccccccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeEecc
Confidence            111    112689999999999999999999999988877777777665

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.71  E-value=6.9e-17  Score=150.78  Aligned_cols=153  Identities=14%  Similarity=0.139  Sum_probs=103.5

Q ss_pred             ccccEEEEeeec--cCCCCeEEEee--cccccccccccccccCCCccEE-eeCCeEEEcCCccccCCeeEEEEeecCcee
Q psy14896        208 ILNDITLSCYAG--GYPNPSYEWFK--EDYVQDRLVANLIDPLSDKRFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGS  282 (813)
Q Consensus       208 ~g~~v~l~C~~~--g~P~p~v~W~k--~g~~l~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~  282 (813)
                      +|++|+|.|...  +.|.+.|.|+|  ++..|............+.|+. ..+|+|.|.+. +.+|+|.|+|.|.|..|.
T Consensus        13 ~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v-~~~DsG~Y~c~~~n~~g~   91 (182)
T 1hnf_A           13 LGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHL-KTDDQDIYKVSIYDTKGK   91 (182)
T ss_dssp             TTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSC-CGGGCEEEEEEEEETTSC
T ss_pred             cCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCC-ChhhCEEEEEEEEeCCCc
Confidence            347899999652  35678999999  8876632211110111234444 45889999996 899999999999998887


Q ss_pred             eE-eeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCccEEEccCccEEEeeeeec
Q psy14896        283 II-SESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQI  361 (813)
Q Consensus       283 ~~-s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~v~~~  361 (813)
                      .. +..+.|.|..+..     .|........++|.|.+ .+.|.+.+.|++||.++  .       .....|.+.. ..+
T Consensus        92 ~~~~~~~~L~V~~~~~-----~P~i~~~~~~v~L~C~~-~~~p~~~~~W~~~g~~l--~-------~~~~~i~~~~-~~~  155 (182)
T 1hnf_A           92 NVLEKIFDLKIQERVS-----KPKISWTCINTTLTCEV-MNGTDPELNLYQDGKHL--K-------LSQRVITHKW-TTS  155 (182)
T ss_dssp             EEEEEEEEEEEECCCC-----CCEEEEETTTTEEEEEC-SSCSSCEEEEEESSCEE--E-------EESSCEEEEC-CSC
T ss_pred             eeEEEEEEEEEcCcCC-----CCEEEEccCcEEEEeEc-cCCCCCEEEEEECCEEC--C-------CCCcEEEEec-ccC
Confidence            53 3566777754311     12222233478999996 56679999999999874  1       1223444433 578


Q ss_pred             CCeeeEEEEeeecccc
Q psy14896        362 DAGNYSCNVQSKVSDT  377 (813)
Q Consensus       362 D~G~Y~C~a~n~~g~~  377 (813)
                      |+|.|+|.|.|..+..
T Consensus       156 d~G~Y~C~a~N~~~~~  171 (182)
T 1hnf_A          156 LSAKFKCTAGNKVSKE  171 (182)
T ss_dssp             EEEEEEEEEECSSCEE
T ss_pred             CCcEEEEEEEeCCCCc
Confidence            9999999999998753

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.71  E-value=9.4e-18  Score=161.21  Aligned_cols=165  Identities=13%  Similarity=0.101  Sum_probs=106.1

Q ss_pred             cccEEEEeeec----cCCCCeEEEeecccccccccccc--cccCCCccEEe---eCCeEEEcCCccccCCeeEEEEeecC
Q psy14896        209 LNDITLSCYAG----GYPNPSYEWFKEDYVQDRLVANL--IDPLSDKRFTL---SGGNLIINDPRQVEDRGSYHCKASNK  279 (813)
Q Consensus       209 g~~v~l~C~~~----g~P~p~v~W~k~g~~l~~~~~~~--~~~~~~~~~~~---~~~~l~i~~~~~~~d~G~Y~C~a~n~  279 (813)
                      |++++|.|.+.    +.|.+.+.|+|++..+.......  .......+..+   .+++|.|.+. +.+|+|.|+|.|.|.
T Consensus         9 G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v-~~~D~G~Y~C~~~~~   87 (201)
T 1dr9_A            9 KEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILAL-RPSDEGTYECVVLKY   87 (201)
T ss_dssp             TSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSC-CGGGCEEEEEEEEEC
T ss_pred             CCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecc-cchhCeEEEEEEEcC
Confidence            47799999995    45778999999997652111000  00011122222   2467888885 899999999999997


Q ss_pred             ceeeE----eeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCccEEEccC-ccEE
Q psy14896        280 FGSII----SESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD-GALY  354 (813)
Q Consensus       280 ~g~~~----s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~-~~L~  354 (813)
                      .|...    ...+.|.|..++..+.. .......|+.++|.|.+..|.|.|.|+|+|||.++.. ...++....+ +.+.
T Consensus        88 ~g~~~~~~~~~~~~l~V~~~~~~p~~-~~~~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~-~~~~~~~~~~~~~~~  165 (201)
T 1dr9_A           88 EKDAFKREHLAEVTLSVKADFPTPSI-SDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNA-INTTVSQDPETELYA  165 (201)
T ss_dssp             CTTSCEEEEEEEEEEEEECCCCCCEE-EEEECSSTTEEEEEEEEEEESSCEEEEEEESSCEECC-SEEEEEECTTTCCEE
T ss_pred             CCCccccccccEEEEEEcCCCCCCce-EeccCCCCCeEEEEEecCCccCCCEEEEEECCEECcc-ccceEEecCCCcEEE
Confidence            76543    24566666543211000 0011134667799999756899999999999987532 2334444444 3322


Q ss_pred             ---EeeeeecCCeeeEEEEeeeccc
Q psy14896        355 ---FSALEQIDAGNYSCNVQSKVSD  376 (813)
Q Consensus       355 ---i~~v~~~D~G~Y~C~a~n~~g~  376 (813)
                         +..+..+|.|.|+|.|.|..|.
T Consensus       166 ~~~~~~v~~~d~g~Y~C~a~n~~~~  190 (201)
T 1dr9_A          166 VSSKLDFNMTTNHSFMCLIKYGHLR  190 (201)
T ss_dssp             EEEEEEEETTSCEEEEEEEEETTCC
T ss_pred             EEEEEEEEecCCCEEEEEEecCcce
Confidence               3456678999999999998874

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.71  E-value=5.9e-17  Score=160.55  Aligned_cols=166  Identities=17%  Similarity=0.188  Sum_probs=112.4

Q ss_pred             CCCceeccCCCceEEeCCCCCCC----ccEEEEccCC--CCCc--c--------cCCCeEEEeeCc---cEEEEeecccC
Q psy14896        575 RAPEIGNQNWGKAMFCDPPTNYP----GVNYYWARDY--FPNF--V--------EEDKRVFVSYDG---ALYFSALEQID  635 (813)
Q Consensus       575 ~~~~~~~~g~~~~l~C~~~~~~p----~~~v~W~k~~--~~~~--~--------~~~~~~~~~~~~---~L~i~~~~~~d  635 (813)
                      +....+.+|+.++|.|.+ .+.|    .+.|.|+|++  ....  .        ....|+.+..++   +|+|.+++.+|
T Consensus         8 p~~~~v~~G~~v~L~C~~-~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   86 (240)
T 1moe_A            8 PASLAVSLGQRATMSCRA-GESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADD   86 (240)
T ss_dssp             CSEEEECTTSCEEEEEEE-SSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CCeEEecCCCCEEEEEeC-CCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCChhh
Confidence            344567889999999999 6777    7899999963  2110  0        113456555433   69999999999


Q ss_pred             CeeEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCC--CeEEEEeC--Cc
Q psy14896        636 AGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPV--PSYNWTRR--GS  711 (813)
Q Consensus       636 ~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~--p~i~W~k~--g~  711 (813)
                      +|.|+|.|.|..+...  .....|.|..++.....  +.....+....+.+|++++|.|.+.|.|.  +.|+|+|+  |.
T Consensus        87 ~G~Y~C~~~n~~~~~~--~~~~~l~V~~~~~~~~~--~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~  162 (240)
T 1moe_A           87 VATYYCQQTNEDPYTF--GGGTKLEIKGGGSGGGG--EVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQ  162 (240)
T ss_dssp             CEEEEEEECSSSSCCB--CCCEEEEECCCSCCCCC--CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTS
T ss_pred             CEEEEEEEccCCceee--cCCEEEEEecCCCCCCc--eEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCC
Confidence            9999999999865321  22356777765421000  00001122356889999999999999884  59999996  33


Q ss_pred             ccC--------C---------Cceee------ecceEEEECCCCCCCCEEEEEEEEc
Q psy14896        712 PLP--------R---------NAYFE------NFNRILTIPNVKVEDQGEYICRASN  745 (813)
Q Consensus       712 ~l~--------~---------~~~~~------~~~~~L~i~~v~~~d~G~Y~C~a~N  745 (813)
                      .+.        .         ..++.      ....+|+|.+++.+|+|.|+|.|.+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~  219 (240)
T 1moe_A          163 GLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFG  219 (240)
T ss_dssp             CCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred             CcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEe
Confidence            321        0         11221      1235799999999999999999985

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.71  E-value=5.6e-18  Score=163.34  Aligned_cols=178  Identities=12%  Similarity=0.204  Sum_probs=109.3

Q ss_pred             ceeeCCCcee-ecCCCccccccEEEEeeeccCC---C-CeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCcc
Q psy14896        191 YFIKQPTDVV-FDLSKRSILNDITLSCYAGGYP---N-PSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQ  265 (813)
Q Consensus       191 ~~~~~p~~~~-v~~g~~~~g~~v~l~C~~~g~P---~-p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~  265 (813)
                      +++..|.... +.+|     ++++|.|.+.|.|   . +.|.|||++..+............+.++. ..++|.|.+ ++
T Consensus         4 v~~~~P~~~~~v~~G-----~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~-~~~~L~I~~-~~   76 (207)
T 2vol_A            4 VFIFPPKPKDVLTIT-----LTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFR-SVSELPIMH-QD   76 (207)
T ss_dssp             EEEECCCHHHHHSTT-----SCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEE-EEEEEECCH-HH
T ss_pred             EEEeCcChhhhhccC-----CceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEE-EEEEEEEeh-hH
Confidence            3444455433 5455     7799999998874   2 49999999976532110000000112221 124577765 48


Q ss_pred             ccCCeeEEEEeecCceee-EeeeeEE--eeeeecccccCCCCceeecCCCeEEEecCCCCCCc-ceEEEeeccccccccC
Q psy14896        266 VEDRGSYHCKASNKFGSI-ISESVQL--AFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPG-VNYYWARDYFPNFVEE  341 (813)
Q Consensus       266 ~~d~G~Y~C~a~n~~g~~-~s~~~~l--~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~-~~v~W~k~~~~~~~~~  341 (813)
                      .+|+|.|+|.|.|..+.. ....+.+  .+..+|.+.+.........|+.++|.|.+.+..|. ++++|+|||+++....
T Consensus        77 ~~D~G~Y~C~a~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~  156 (207)
T 2vol_A           77 WLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYK  156 (207)
T ss_dssp             HHTTCCEEEEEECTTCSSCEEEEECCCCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEE
T ss_pred             cCCCCEEEEEEEccCCCCceEEEeccCCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcc
Confidence            999999999999988753 1233433  34445555444433333357888999997554566 5999999998753222


Q ss_pred             CccEEEccCccEE------EeeeeecCCeeeEEEEeeecc
Q psy14896        342 DKRVFVSYDGALY------FSALEQIDAGNYSCNVQSKVS  375 (813)
Q Consensus       342 ~~~~~~~~~~~L~------i~~v~~~D~G~Y~C~a~n~~g  375 (813)
                      ..+.....+|++.      |.....+|.|.|+|.|.|...
T Consensus       157 ~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l  196 (207)
T 2vol_A          157 NTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGL  196 (207)
T ss_dssp             ECCCEECTTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTS
T ss_pred             cCCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEECCCC
Confidence            2233345566544      444444579999999998764

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.71  E-value=1.3e-17  Score=163.35  Aligned_cols=180  Identities=14%  Similarity=0.182  Sum_probs=116.2

Q ss_pred             CceeccCCCceEEeCCCCCCC--ccEEEEccCCC--CCc-c---c-----------CCCeEEEee-----CccEEEEeec
Q psy14896        577 PEIGNQNWGKAMFCDPPTNYP--GVNYYWARDYF--PNF-V---E-----------EDKRVFVSY-----DGALYFSALE  632 (813)
Q Consensus       577 ~~~~~~g~~~~l~C~~~~~~p--~~~v~W~k~~~--~~~-~---~-----------~~~~~~~~~-----~~~L~i~~~~  632 (813)
                      +..+.+|++++|.|.+ .+.+  .+.|.|+|++.  ... +   .           ...|+.+..     +.+|+|.+++
T Consensus         9 ~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (227)
T 1mju_H            9 AELVKPGASVKLSCKA-SGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLT   87 (227)
T ss_dssp             EEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CeEEcCCCCEEEEEEe-cCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCCC
Confidence            4567889999999998 5665  68899999642  210 0   0           134666653     2469999999


Q ss_pred             ccCCeeEEEEEEeeecCccccCceeeEEEccCC-CccccccCCCCCCCCCcCCCCCCeEEEEEEecCC-CCC-eEEEEeC
Q psy14896        633 QIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHS-NFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGY-PVP-SYNWTRR  709 (813)
Q Consensus       633 ~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p-~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~-P~p-~i~W~k~  709 (813)
                      .+|+|.|.|.+.|..+...  .....|.|...+ ....+...   .+  ...+.+|+.++|.|.+.|. |.| .|+|+|+
T Consensus        88 ~~D~G~Y~C~~~~~~~~~~--~~~~~L~V~~~~~~~P~v~~~---~~--~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~  160 (227)
T 1mju_H           88 SDDSAVYYCANKLGWFPYW--GQGTLVTVSAAKTTAPSVYPL---AP--VCGDTSGSSVTLGCLVKGYFPEPVTLTWNSG  160 (227)
T ss_dssp             GGGCEEEEEEEEETTEEEE--CCCEEEEECSSCCBCCEEEEE---CC--CC------CEEEEEEEEEEBSSCCEEEEGGG
T ss_pred             cccCEEEEEEECCCCceEE--cCcEEEEEcCCCCCCCEEEEe---cC--CccccCCCcEEEEEEeecEeCCCeEEEEecC
Confidence            9999999999998532111  112467776521 11111100   00  1245689999999999986 777 9999999


Q ss_pred             CcccCCC---ceee----ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCCccc
Q psy14896        710 GSPLPRN---AYFE----NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFT  765 (813)
Q Consensus       710 g~~l~~~---~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~~~  765 (813)
                      |..+...   ....    ...+.|.|..+..+| |.|+|.|.|..+.....+.|.+..||.-+
T Consensus       161 g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~~~~p~~~  222 (227)
T 1mju_H          161 SLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKP  222 (227)
T ss_dssp             TBCTTEEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCCCCC----
T ss_pred             CCcCCcEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCCCCCCCCC
Confidence            9875311   0111    124579999999988 99999999988887777888777776543

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.71  E-value=9.9e-16  Score=177.87  Aligned_cols=434  Identities=10%  Similarity=-0.002  Sum_probs=232.5

Q ss_pred             ccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeeeeE
Q psy14896        210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQ  289 (813)
Q Consensus       210 ~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~  289 (813)
                      .++.|.|.+.|.|.|.+.|.|+|..+..               ...+.+.|......+..+.|.|.+.|..|......+.
T Consensus        92 g~l~v~c~~~g~P~p~i~W~k~g~~~~~---------------~~~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~  156 (731)
T 2v5y_A           92 GLLNVYVKVNNGPLGNPIWNISGDPTRT---------------WNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVK  156 (731)
T ss_dssp             EEEEEEEEETTCCCCSEEEEECCCCCSS---------------CEEEEEEECCCTTSCEEEEEEEEECSSCCEEEECCBE
T ss_pred             ceEEEEEecCCCCccceeEEEeCCcCCc---------------eeEEEEEEeecCCCceEEEEEEEecCCceEEEEeeEE
Confidence            5799999999999999999999975411               1122344443212334589999998988876555554


Q ss_pred             Eeee---eecccccCCCCceeecCCCeEEEecCCCCCCcceEE-Ee--eccccccccCCccEEEcc---CccEEEeeeee
Q psy14896        290 LAFG---FIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYY-WA--RDYFPNFVEEDKRVFVSY---DGALYFSALEQ  360 (813)
Q Consensus       290 l~v~---~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~-W~--k~~~~~~~~~~~~~~~~~---~~~L~i~~v~~  360 (813)
                      +.+.   .+|.+. .+....+.+|+.++|.|.+ .|.|.+.+. |+  +||+++...  ....+..   .++|.|.++..
T Consensus       157 ~~~~~~~~~p~~~-~~~~~~v~~G~~v~l~C~~-~g~P~p~i~~W~~~~~g~~l~~~--~~~~~~~~~~~~~l~I~~~~~  232 (731)
T 2v5y_A          157 VLGHPCTRTPHFL-RIQNVEVNAGQFATFQCSA-IGRTVAGDRLWLQGIDVRDAPLK--EIKVTSSRRFIASFNVVNTTK  232 (731)
T ss_dssp             EESSCCSSSCEEC-CCCCEEEETTSCEEEEEEE-ESCCCTTCEEEEEESSSCCEEEE--EEEECCSSEEEEEEEECSCCT
T ss_pred             eeecccccccccc-cccceEEeCCCcEEEEEEe-CCCCCCceeEEEecCCCcccccc--ceEEeccccceEEEEEccccc
Confidence            4432   233343 4556788899999999995 788999988 88  778764322  1222222   25899999999


Q ss_pred             cCCeeeEEEEeeeccccCCCCCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEEEEeecCCCeeeEeecCCcC
Q psy14896        361 IDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPL  440 (813)
Q Consensus       361 ~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~~~~l  440 (813)
                      .|+|.|+|.|.|..|...  +..+.|.|..+|.+..  .|.       ........+.|.|.....+        .+.++
T Consensus       233 ~d~g~Y~c~A~n~~G~~~--s~~~~l~V~~~P~~~~--~p~-------~~~~~~~~v~l~w~~~~~~--------g~~~i  293 (731)
T 2v5y_A          233 RDAGKYRCMIRTEGGVGI--SNYAELVVKEPPVPIA--PPQ-------LASVGATYLWIQLNANSIN--------GDGPI  293 (731)
T ss_dssp             TTCEEEEEEEEETTEEEE--CCCEEEEEECCCCBSS--CCE-------EEEECSSCEEEECCCSSBS--------SCSCC
T ss_pred             ccCeEEEEEEECCCCCcc--eeeEEEEEecCCCCCC--Ccc-------eeccCCceEEEEeCCcccC--------CCCcc
Confidence            999999999999988521  2336788876543111  000       0011123344443321100        00000


Q ss_pred             CCCceeccccceEEEcccccccceEEeCCCceEecccccccccCeEEEEEeeccCCCcEEEeeccccccceeccccCCCC
Q psy14896        441 PRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS  520 (813)
Q Consensus       441 ~~~~~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~  520 (813)
                      .                                                      .-.|.|.+.+...            
T Consensus       294 ~------------------------------------------------------~Y~v~~~~~~~~~------------  307 (731)
T 2v5y_A          294 V------------------------------------------------------AREVEYCTASGSW------------  307 (731)
T ss_dssp             C------------------------------------------------------EEEEEEEESSSSC------------
T ss_pred             E------------------------------------------------------EEEEEEEECCCCc------------
Confidence            0                                                      0012333222100            


Q ss_pred             CceEEeeCCeEEEeCCCCCCCCceEEEEEE--cCceeEE-eecEEEEEeecccccccCCC-ceeccCCCceEEeCCCCCC
Q psy14896        521 DKRFTLSGGNLIINDPRQVEDRGSYHCKAS--NKFGSII-SESVQLAFGFIGEFNLKRAP-EIGNQNWGKAMFCDPPTNY  596 (813)
Q Consensus       521 ~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~--n~~g~~~-s~~~~l~v~~~p~~~~~~~~-~~~~~g~~~~l~C~~~~~~  596 (813)
                      .........++.|.+. ...+...|+|.|.  |..|... +..+.+..........+... ........++|.+..+...
T Consensus       308 ~~~~~~~~~~~~i~~L-~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~t~~~~p~~~P~~~~~~~~~~~sv~l~W~~p~~~  386 (731)
T 2v5y_A          308 NDRQPVDSTSYKIGHL-DPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYN  386 (731)
T ss_dssp             EEEEECCSSEEEECSC-CTTCEEEEEEEEECSSTTCSCCBCCCEEEECCCCCCSCCCEEEEEEEECSSCEEEEEECCCHH
T ss_pred             eEEeccCcceEEEeCC-CCCCEEEEEEEEEecCCCccccCCCcEEeeecCCCCCCCCceeEEEeccCCeEEEEEECCCcc
Confidence            0011123457888886 7778888889999  9988753 22222222111000000011 1122345677888763110


Q ss_pred             ----C--ccEEEEccCCCCCcccCCCeE-EEe---eCccEEEEeecccCCeeEEEEEEeeecCccccCceeeEEEccCCC
Q psy14896        597 ----P--GVNYYWARDYFPNFVEEDKRV-FVS---YDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSN  666 (813)
Q Consensus       597 ----p--~~~v~W~k~~~~~~~~~~~~~-~~~---~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~  666 (813)
                          +  .-.|.|...+...  ....+. .+.   ....+.|.++.+.....|++.|.|..|... +   ..+.+.....
T Consensus       387 ~~~~~~~~y~v~y~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~-S---~~~~~~T~~~  460 (731)
T 2v5y_A          387 VTRCHSYNLTVHYCYQVGGQ--EQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKE-S---QELIVQTDED  460 (731)
T ss_dssp             HHCSSSCEEEEEEEEESSSS--EEEEEEEECCSSCSSCEEEECSCCSSCEEEEEEEEECSSCEEE-C---CCEEEECCCC
T ss_pred             cccceeeeEEEEEEEccCCC--CccceeEEEEecCCcceEEECCCCCCCEEEEEEEEEcCCCCCC-C---ceEEEEccCC
Confidence                0  1235554432110  000000 111   122488999999999999999999998742 2   2233332221


Q ss_pred             ccccccCCCCCCCCCcCCC-CCCeEEEEEEecCCCCC-----eEEEEeCCcc---cC--CCc---eeeecceEEEECCCC
Q psy14896        667 FQQLKFPNNFPKTFPEAPK-AGDKVRLECVAFGYPVP-----SYNWTRRGSP---LP--RNA---YFENFNRILTIPNVK  732 (813)
Q Consensus       667 ~~~~~~p~~~~~~~~~~~~-~G~~v~l~C~~~g~P~p-----~i~W~k~g~~---l~--~~~---~~~~~~~~L~i~~v~  732 (813)
                      .     |.. ++.....+. ....+.|.-..-..+.-     .|.|...+..   ..  ...   ........++|.++.
T Consensus       461 ~-----P~~-p~~~~~~~~~~~~si~l~W~~P~~~~g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~  534 (731)
T 2v5y_A          461 L-----PGA-VPTESIQGSTFEEKIFLQWREPTQTYGVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLY  534 (731)
T ss_dssp             C-----CCC-CCTTTCEEEEETTEEEEECCCCSCCSSCCCEEEEEEEEEEECC---CCCCCEEEEEEETTCCEEEECSCC
T ss_pred             C-----CCC-CCcceEEeeecCCeEEEEEcCCCCCCCCccceEEEEEECcCCCccccccCcceEEeecCCcceEEecCCC
Confidence            1     111 000011111 24566666654322111     3444433211   00  000   112234578999999


Q ss_pred             CCCCEEEEEEEEcCCCceEEEEEEEEEcC
Q psy14896        733 VEDQGEYICRASNDRSALESSVTISIQAE  761 (813)
Q Consensus       733 ~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~  761 (813)
                      ..-...|+..|.|..|....+ .+.+.-+
T Consensus       535 p~t~Y~~~V~A~n~~G~g~~s-~~~~~T~  562 (731)
T 2v5y_A          535 PGTTYSFTIRASTAKGFGPPA-TNQFTTK  562 (731)
T ss_dssp             TTEEEEEEEEEEETTEEEEEE-EEEEECC
T ss_pred             CCCEEEEEEEEEeCCccCCCc-ccEEEcC
Confidence            988899999999998865554 3445433

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.71  E-value=1.8e-17  Score=160.41  Aligned_cols=168  Identities=15%  Similarity=0.216  Sum_probs=113.3

Q ss_pred             CCceeccCCCceEEeCCCCCCC--ccEEEEccCC--CCCc--c------------cCCCeEEEeeC-----ccEEEEeec
Q psy14896        576 APEIGNQNWGKAMFCDPPTNYP--GVNYYWARDY--FPNF--V------------EEDKRVFVSYD-----GALYFSALE  632 (813)
Q Consensus       576 ~~~~~~~g~~~~l~C~~~~~~p--~~~v~W~k~~--~~~~--~------------~~~~~~~~~~~-----~~L~i~~~~  632 (813)
                      .+..+.+|+.++|.|.+ .+.|  .+.|.|+|++  ....  .            ....|+.+..+     .+|+|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   86 (210)
T 3d9a_H            8 GPSLVKPSQTLSLTCSV-TGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVT   86 (210)
T ss_dssp             SCSEECTTSCEEEEEEE-ESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCEEecCCCcEEEEEEE-ecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCC
Confidence            34567889999999998 5654  4899999863  2110  0            11356665532     279999999


Q ss_pred             ccCCeeEEEEEEeeecCccccCceeeEEEccCC-CccccccCCCCCCCCCcCCCCCCeEEEEEEecCC-CCC-eEEEEeC
Q psy14896        633 QIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHS-NFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGY-PVP-SYNWTRR  709 (813)
Q Consensus       633 ~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p-~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~-P~p-~i~W~k~  709 (813)
                      .+|+|.|.|.|.|.. .   ......|.|...+ ....+..     ......+.+|+.++|.|.+.|. |.| .|+|+|+
T Consensus        87 ~~D~G~Y~C~~~~~~-~---~~~~~~l~V~~~~~~~P~v~~-----~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~  157 (210)
T 3d9a_H           87 TEDTATYYCANWDGD-Y---WGQGTLVTVSAAKTTPPSVYP-----LAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSG  157 (210)
T ss_dssp             GGGCEEEEEEETTSS-C---BCCCEEEEECCCCCBCCEEEE-----ECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGG
T ss_pred             cccCEEEEEEEecCc-c---cccceEEEeccCCCCCCEEEE-----ecCCcccccCCcEEEEEEEeeEecCCcEEEEeeC
Confidence            999999999999863 1   1112467776321 1111110     0111346789999999999987 888 9999999


Q ss_pred             CcccCCCc--ee-e----ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEE
Q psy14896        710 GSPLPRNA--YF-E----NFNRILTIPNVKVEDQGEYICRASNDRSALESSV  754 (813)
Q Consensus       710 g~~l~~~~--~~-~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~  754 (813)
                      |..+....  .. .    ...+.|.|..+..+| |.|+|.|.|..|......
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~  208 (210)
T 3d9a_H          158 SLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDK  208 (210)
T ss_dssp             TBCTTEEECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             CcccceEEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccccc
Confidence            98653111  11 1    123569999998877 999999999998765443

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.71  E-value=1.4e-17  Score=161.62  Aligned_cols=175  Identities=18%  Similarity=0.214  Sum_probs=112.3

Q ss_pred             CCceeecCCCccccccEEEEeeeccCCCCeEEEeecc--cccccccc--cccccCCCccEEee--C--CeEEEcCCcccc
Q psy14896        196 PTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKED--YVQDRLVA--NLIDPLSDKRFTLS--G--GNLIINDPRQVE  267 (813)
Q Consensus       196 p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g--~~l~~~~~--~~~~~~~~~~~~~~--~--~~l~i~~~~~~~  267 (813)
                      |..+.+.+|     ++++|.|.+.+.|.+.|.|||++  ..+.....  .........++...  .  .+|.|.+. +.+
T Consensus         6 p~~~~v~~G-----~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v-~~~   79 (212)
T 1nfd_E            6 PSSASVTVG-----ETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGA-QPE   79 (212)
T ss_dssp             CSEEEEETT-----SCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTC-CGG
T ss_pred             CCeEEEeCC-----CcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcC-Ccc
Confidence            677777777     67999999999888899999964  32210000  00001113445433  2  36888875 899


Q ss_pred             CCeeEEEEeecC--ceeeEeeeeEEeee----eecccccCCCCceeecCCCeEEEecCCCCCCc-ceEEEeecccccccc
Q psy14896        268 DRGSYHCKASNK--FGSIISESVQLAFG----FIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPG-VNYYWARDYFPNFVE  340 (813)
Q Consensus       268 d~G~Y~C~a~n~--~g~~~s~~~~l~v~----~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~-~~v~W~k~~~~~~~~  340 (813)
                      |+|.|+|.|.|.  .....+..+.|.|.    .+|.+.+........+|+.++|.|.+.+..|. +.++|+|||+++...
T Consensus        80 D~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~  159 (212)
T 1nfd_E           80 DEAAYYCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDG  159 (212)
T ss_dssp             GCSEEEEEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSS
T ss_pred             cCEEEEEEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCC
Confidence            999999999962  22222344556663    23334443344445578888999997544465 899999999875322


Q ss_pred             CCc-cEE-----EccCccEEEeeeeecCCeeeEEEEeeeccc
Q psy14896        341 EDK-RVF-----VSYDGALYFSALEQIDAGNYSCNVQSKVSD  376 (813)
Q Consensus       341 ~~~-~~~-----~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~  376 (813)
                      ... ...     ....+.|.|.++..+|+|.|+|.|.|..+.
T Consensus       160 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  201 (212)
T 1nfd_E          160 VKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGET  201 (212)
T ss_dssp             CBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred             eecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCce
Confidence            110 000     011246999999999999999999998653

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.71  E-value=3.1e-17  Score=159.56  Aligned_cols=174  Identities=18%  Similarity=0.197  Sum_probs=110.2

Q ss_pred             CCceeecCCCccccccEEEEeee-ccCC-CCeEEEeeccc--ccccccc--cccccCCCccEEee----CCeEEEcCCcc
Q psy14896        196 PTDVVFDLSKRSILNDITLSCYA-GGYP-NPSYEWFKEDY--VQDRLVA--NLIDPLSDKRFTLS----GGNLIINDPRQ  265 (813)
Q Consensus       196 p~~~~v~~g~~~~g~~v~l~C~~-~g~P-~p~v~W~k~g~--~l~~~~~--~~~~~~~~~~~~~~----~~~l~i~~~~~  265 (813)
                      |..+.+.+|     ++++|.|.+ .+.| .+.|.|||++.  .+.....  .........++...    +.+|.|.+. +
T Consensus         7 p~~~~v~~G-----~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v-~   80 (216)
T 2xzc_L            7 PPSVSAAPG-----QKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGL-Q   80 (216)
T ss_dssp             CSEEEECTT-----CCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSC-C
T ss_pred             CCcEEecCC-----CeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCC-C
Confidence            666777676     779999995 5543 67999999652  2110000  00001123355443    226888885 8


Q ss_pred             ccCCeeEEEEeecCce-eeEeeeeEEeeee---ecccccCCCCceeecCCCeEEEecCCCCCCcc-eEEEeecccccccc
Q psy14896        266 VEDRGSYHCKASNKFG-SIISESVQLAFGF---IGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGV-NYYWARDYFPNFVE  340 (813)
Q Consensus       266 ~~d~G~Y~C~a~n~~g-~~~s~~~~l~v~~---~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~-~v~W~k~~~~~~~~  340 (813)
                      .+|+|.|+|.|.|..+ ...+..+.|.|..   +|.+.+.........|+.++|.|.+.++.|.+ +|+|+|||+++...
T Consensus        81 ~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~  160 (216)
T 2xzc_L           81 TGDEADYYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGN  160 (216)
T ss_dssp             GGGCEEEEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSS
T ss_pred             cccCEEEEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCC
Confidence            9999999999999876 3334455666643   23333323333334577889999975546664 99999999875322


Q ss_pred             --CCccEEEccCc------cEEEeeeeecCCeeeEEEEeeecc
Q psy14896        341 --EDKRVFVSYDG------ALYFSALEQIDAGNYSCNVQSKVS  375 (813)
Q Consensus       341 --~~~~~~~~~~~------~L~i~~v~~~D~G~Y~C~a~n~~g  375 (813)
                        .........++      .|.|..+..+|+|.|+|.|.|...
T Consensus       161 ~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  203 (216)
T 2xzc_L          161 SQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGL  203 (216)
T ss_dssp             EEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTC
T ss_pred             eeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCC
Confidence              00111112223      588999999999999999998764

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.71  E-value=2.3e-16  Score=157.48  Aligned_cols=193  Identities=15%  Similarity=0.153  Sum_probs=123.5

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccCC--CCeEEEeec--ccccccccc-------cccccCCCccEEee-C----
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYP--NPSYEWFKE--DYVQDRLVA-------NLIDPLSDKRFTLS-G----  255 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P--~p~v~W~k~--g~~l~~~~~-------~~~~~~~~~~~~~~-~----  255 (813)
                      ++..|..+.+.+|     ++|+|.|.+.|.+  .+.|.|||.  +..+.....       .........++... +    
T Consensus         4 ~~~~p~~~~v~~G-----~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~   78 (253)
T 3uzq_A            4 LLEQSGAELVKPG-----ASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSN   78 (253)
T ss_dssp             CEEECCCEEECTT-----CCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTT
T ss_pred             eEecCCCeeecCC-----CcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCC
Confidence            4455667777776     7799999998854  789999993  222211100       00111122344433 1    


Q ss_pred             -CeEEEcCCccccCCeeEEEEeecCceeeEeeeeEEeeeee---------------cccccCCCCceeecCCCeEEEecC
Q psy14896        256 -GNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFI---------------GEFNLKRAPEIGNQNWGKAMFCDP  319 (813)
Q Consensus       256 -~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~---------------~~~~~~~~~~~~~~~~~~~l~C~~  319 (813)
                       .+|.|.+. +.+|+|.|+|.|.|..+...+..+.|.|...               +.+...+....+.+|+.++|.|.+
T Consensus        79 ~~~L~I~~v-~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~  157 (253)
T 3uzq_A           79 TAYLHLSSL-TSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRA  157 (253)
T ss_dssp             EEEEEECSC-CGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEE
T ss_pred             eEEEEeCCC-CcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEe
Confidence             13888885 8999999999999977665455667777642               223333445678899999999996


Q ss_pred             CCCCCcc----eEEEeecc--cccc-c---------cCCccEEEccC---ccEEEeeeeecCCeeeEEEEeeeccccCCC
Q psy14896        320 PTNYPGV----NYYWARDY--FPNF-V---------EEDKRVFVSYD---GALYFSALEQIDAGNYSCNVQSKVSDTGRN  380 (813)
Q Consensus       320 ~~~~p~~----~v~W~k~~--~~~~-~---------~~~~~~~~~~~---~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~  380 (813)
                       .+.|.+    .+.|+|++  .... +         ....|+.....   .+|.|.+++.+|+|.|+|.|.|..+  ...
T Consensus       158 -~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~--~~f  234 (253)
T 3uzq_A          158 -SENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVP--WTF  234 (253)
T ss_dssp             -SSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSS--CCB
T ss_pred             -cCccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCC--cEE
Confidence             456665    99999953  2211 0         11234443332   2699999999999999999998643  233


Q ss_pred             CCceeeEEccCCc
Q psy14896        381 GPFFPLKVFPHSN  393 (813)
Q Consensus       381 s~~~~l~v~~~~~  393 (813)
                      +....|.|...+.
T Consensus       235 g~gt~l~v~~~~~  247 (253)
T 3uzq_A          235 GGGTKLEIKRPLE  247 (253)
T ss_dssp             CCCEEEEECCC--
T ss_pred             CCCEEEEEcCCCC
Confidence            4457788875543

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.71  E-value=1.1e-16  Score=156.39  Aligned_cols=168  Identities=17%  Similarity=0.268  Sum_probs=115.7

Q ss_pred             CceeccCCCceEEeCCCCCCC--ccEEEEccCCC--CCc-c--------------cCCCeEEEeeC-----ccEEEEeec
Q psy14896        577 PEIGNQNWGKAMFCDPPTNYP--GVNYYWARDYF--PNF-V--------------EEDKRVFVSYD-----GALYFSALE  632 (813)
Q Consensus       577 ~~~~~~g~~~~l~C~~~~~~p--~~~v~W~k~~~--~~~-~--------------~~~~~~~~~~~-----~~L~i~~~~  632 (813)
                      +..+.+|+.++|.|.+ .+.+  .+.|.|||...  ... +              ....|+.+..+     .+|+|.+++
T Consensus         9 ~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (223)
T 1dee_B            9 GGVVQPGKSLRLSCAA-SGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLR   87 (223)
T ss_dssp             CCEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CEEEcCCCcEEEEEEe-cCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCC
Confidence            5567889999999998 5554  47899998542  110 0              01346666542     369999999


Q ss_pred             ccCCeeEEEEEEeeecC---ccccCceeeEEEcc----CCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCC-CCC-e
Q psy14896        633 QIDAGNYSCNVQSKVSD---TGRNGPFFPLKVFP----HSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGY-PVP-S  703 (813)
Q Consensus       633 ~~d~G~Y~C~a~n~~g~---~~~~~~~~~l~v~~----~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~-P~p-~  703 (813)
                      .+|+|.|.|.+.|..|.   .......+.|.|..    +|.+...  ++      ...+.+|+.++|.|.+.|. |.| .
T Consensus        88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~--~~------~~~~~~g~~v~L~C~~~g~~P~p~~  159 (223)
T 1dee_B           88 AEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPL--VS------CENSNPSSTVAVGCLAQDFLPDSIT  159 (223)
T ss_dssp             GGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEE--EC------TTCCCSSSEEEEEEEEEEEBSSCCE
T ss_pred             HHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEe--cC------CcccCCCCcEEEEEEEEEEeCCCeE
Confidence            99999999999987531   00111224677874    2222111  10      1235789999999999987 777 9


Q ss_pred             EEEEe-CCcccCCC---------ceeeecceEEEECCCCC--CCCEEEEEEEEcCCCceEEEE
Q psy14896        704 YNWTR-RGSPLPRN---------AYFENFNRILTIPNVKV--EDQGEYICRASNDRSALESSV  754 (813)
Q Consensus       704 i~W~k-~g~~l~~~---------~~~~~~~~~L~i~~v~~--~d~G~Y~C~a~N~~G~~~~~~  754 (813)
                      |+|+| ||..|...         ..+ ...+.|+|.....  +|.|.|+|.|.|..|.....+
T Consensus       160 v~W~~~~g~~l~~~~~~~~~~~~~~~-~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~~  221 (223)
T 1dee_B          160 FSWKYKNNSDISSTRGFPSVLRGGKY-AATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKDV  221 (223)
T ss_dssp             EEEEETTSCBCSCEEECCCEEETTEE-EEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEEE
T ss_pred             EEeEccCCCccceeEECCccccCCeE-EEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCcccc
Confidence            99999 99888641         111 1135689988876  889999999999998876654

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.70  E-value=2.2e-17  Score=164.56  Aligned_cols=184  Identities=18%  Similarity=0.227  Sum_probs=112.5

Q ss_pred             CCceeecCCCccccccEEEEeeeccCCCCe-----EEEeeccccccccccc-------ccccCCCccEE-----eeCCeE
Q psy14896        196 PTDVVFDLSKRSILNDITLSCYAGGYPNPS-----YEWFKEDYVQDRLVAN-------LIDPLSDKRFT-----LSGGNL  258 (813)
Q Consensus       196 p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~-----v~W~k~g~~l~~~~~~-------~~~~~~~~~~~-----~~~~~l  258 (813)
                      |....+.+|     ++++|.|.+.|.|.+.     |.|||++.........       ........++.     ..+.+|
T Consensus        10 p~~~~v~~G-----~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL   84 (248)
T 3pv7_A           10 GGTQITPLN-----DNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASL   84 (248)
T ss_dssp             TSEEEEETT-----SCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCE
T ss_pred             CCCeEEeCC-----CCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEE
Confidence            445566666     7799999999888776     9999986432110000       00000011111     013358


Q ss_pred             EEcCCccccCCeeEEEEeecCceeeEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCcc-eEEEeeccccc
Q psy14896        259 IINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGV-NYYWARDYFPN  337 (813)
Q Consensus       259 ~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~-~v~W~k~~~~~  337 (813)
                      .|.+. +.+|+|.|+|.|.|..+.. +..+.|.|..+|.+.+... .....+..++|.|.+..+.|.+ .++|+|||+++
T Consensus        85 ~I~~v-~~~D~G~Y~C~~~~~~~~~-~~~~~L~V~~~P~v~~~~~-~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l  161 (248)
T 3pv7_A           85 RLPGI-QLEEAGEYRCEVVVTPLKA-QGTVQLEVVASPASRLLLD-QVGMKENEDKYMCESSGFYPEAINITWEKQTQKF  161 (248)
T ss_dssp             EESSC-CGGGCEEEEEEEEETTEEE-EEEEEEEEEBCCEEEEECC---------CEEEEEEEEEBSSCCEEEEEEECSSS
T ss_pred             EeCCC-CHHHCeEEEEEEEeCCccc-eeEEEEEEecCCceEEecC-CccccCCCcEEEEEEccEECCCeEEEEEECCccC
Confidence            88885 8999999999999988865 6678888887776655443 3344567788999975548988 99999999764


Q ss_pred             ccc----CC---ccEEEccCc------cEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEE
Q psy14896        338 FVE----ED---KRVFVSYDG------ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKV  388 (813)
Q Consensus       338 ~~~----~~---~~~~~~~~~------~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v  388 (813)
                      ...    ..   .......++      .|.|.....+|.|.|+|.|.|..+.. ..+..+.|.|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~-~~~~~v~l~V  224 (248)
T 3pv7_A          162 PHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHT-PLRSNFTLTA  224 (248)
T ss_dssp             CSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSS-CEEEEECC--
T ss_pred             CCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCC-CcEEEEEEEE
Confidence            211    00   112222333      57788888899999999999987752 2223345555

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.70  E-value=2.1e-16  Score=158.19  Aligned_cols=179  Identities=13%  Similarity=0.146  Sum_probs=118.3

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeecc--CCCCeEEEeecc--cccccccc-------cccccCCCccEEee---
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGG--YPNPSYEWFKED--YVQDRLVA-------NLIDPLSDKRFTLS---  254 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g--~P~p~v~W~k~g--~~l~~~~~-------~~~~~~~~~~~~~~---  254 (813)
                      +|.|...+..+.+.+|     ++|+|.|.+.+  .|.+.+.|||..  ..+.....       .........|+.+.   
T Consensus         6 ~~~~~~~~~~~~v~~G-----~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~   80 (256)
T 3juy_B            6 HQVQLVQSGAEVKKPG-----ASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADT   80 (256)
T ss_dssp             -CCEEEECCCEEECTT-----CCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEET
T ss_pred             ceEEEEecCCceecCC-----CeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEec
Confidence            5778888899998887     67999999987  377899999853  21110000       01112223455554   


Q ss_pred             -C--CeEEEcCCccccCCeeEEEEeecC-----------ceeeEeeeeEEeeeee---------------cccccCCCCc
Q psy14896        255 -G--GNLIINDPRQVEDRGSYHCKASNK-----------FGSIISESVQLAFGFI---------------GEFNLKRAPE  305 (813)
Q Consensus       255 -~--~~l~i~~~~~~~d~G~Y~C~a~n~-----------~g~~~s~~~~l~v~~~---------------~~~~~~~~~~  305 (813)
                       .  .+|.|.+. +.+|+|.|.|.|.|.           ........+.|.|...               +.+...+...
T Consensus        81 ~~~~~~L~I~~v-~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (256)
T 3juy_B           81 SANTAYMELRSL-RSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTL  159 (256)
T ss_dssp             TTTEEEEEECSC-CGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEE
T ss_pred             CCCEEEEEECCC-CcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeE
Confidence             1  24888885 899999999999986           1222244566776553               2233335556


Q ss_pred             eeecCCCeEEEecCCCCCCc-ceEEEeec--cccccc----------cCCccEEEccCc---cEEEeeeeecCCeeeEEE
Q psy14896        306 IGNQNWGKAMFCDPPTNYPG-VNYYWARD--YFPNFV----------EEDKRVFVSYDG---ALYFSALEQIDAGNYSCN  369 (813)
Q Consensus       306 ~~~~~~~~~l~C~~~~~~p~-~~v~W~k~--~~~~~~----------~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~  369 (813)
                      .+.+|+.++|.|.+. +.|. +.+.|+|.  +.....          ....|+.+..++   +|.|.+++.+|+|.|+|.
T Consensus       160 ~v~~G~~v~L~C~~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~  238 (256)
T 3juy_B          160 SLSPGERATFSCRSS-HSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQ  238 (256)
T ss_dssp             EECTTSCEEEEEEES-SCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEE
T ss_pred             EEeCCCCEEEEEEEC-CCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEE
Confidence            778899999999974 4555 89999984  332211          023444443333   599999999999999999


Q ss_pred             Eeeec
Q psy14896        370 VQSKV  374 (813)
Q Consensus       370 a~n~~  374 (813)
                      |.|..
T Consensus       239 ~~~~~  243 (256)
T 3juy_B          239 VYGAS  243 (256)
T ss_dssp             ECCSS
T ss_pred             EeeCC
Confidence            99853

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.70  E-value=1.3e-17  Score=140.39  Aligned_cols=82  Identities=24%  Similarity=0.504  Sum_probs=72.5

Q ss_pred             CcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceee----ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEE
Q psy14896        681 PEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI  756 (813)
Q Consensus       681 ~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l  756 (813)
                      +..+.+|++++|.|.+.|.|.|.|+|+|||..|..+.++.    ....+|.|.+++.+|+|.|+|+|.|.+|..++++.|
T Consensus        22 ~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l  101 (107)
T 3knb_B           22 PVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAV  101 (107)
T ss_dssp             CEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             cEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEECCCEEEEEEEE
Confidence            3678899999999999999999999999999998776543    234589999999999999999999999999999999


Q ss_pred             EEEcCC
Q psy14896        757 SIQAEP  762 (813)
Q Consensus       757 ~V~~~P  762 (813)
                      .|..+|
T Consensus       102 ~V~~pP  107 (107)
T 3knb_B          102 TVLEPP  107 (107)
T ss_dssp             EEEC--
T ss_pred             EEEcCC
Confidence            999887

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.70  E-value=3.5e-17  Score=158.56  Aligned_cols=176  Identities=19%  Similarity=0.232  Sum_probs=115.9

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeec--ccccccccc--cccccCCCccEEee----CCeEEEcCC
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKE--DYVQDRLVA--NLIDPLSDKRFTLS----GGNLIINDP  263 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~--g~~l~~~~~--~~~~~~~~~~~~~~----~~~l~i~~~  263 (813)
                      ++..| .+.+.+|     ++++|.|.+.  |.+.|.|||+  +..+.....  .........++...    +.+|.|.+.
T Consensus         4 v~~~~-~~~v~~G-----~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v   75 (211)
T 3tv3_L            4 LTQPP-SASGSPG-----QSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGL   75 (211)
T ss_dssp             CBCCS-EEEECTT-----CEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESC
T ss_pred             EEeCc-eEEEcCC-----CCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCC
Confidence            33344 6677666     7799999998  8899999995  322210000  00001122344432    346888885


Q ss_pred             ccccCCeeEEEEeecCce-eeEeeeeEEeee----eecccccCCCCceeecCCCeEEEecCCCCCC-cceEEEeeccccc
Q psy14896        264 RQVEDRGSYHCKASNKFG-SIISESVQLAFG----FIGEFNLKRAPEIGNQNWGKAMFCDPPTNYP-GVNYYWARDYFPN  337 (813)
Q Consensus       264 ~~~~d~G~Y~C~a~n~~g-~~~s~~~~l~v~----~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p-~~~v~W~k~~~~~  337 (813)
                       +.+|+|.|+|.|.|..| ...+..+.|.|.    .+|.+.+.........|+.++|.|.+.+..| .+.++|+|||.++
T Consensus        76 -~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l  154 (211)
T 3tv3_L           76 -QTDDEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPV  154 (211)
T ss_dssp             -CGGGCEEEEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred             -ChhHCEEEEEEEecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeec
Confidence             89999999999999887 344666777776    3444544444445557899999999754333 5899999999875


Q ss_pred             ccc-CCccEEEccC------ccEEEeeeeecCCeeeEEEEeeeccc
Q psy14896        338 FVE-EDKRVFVSYD------GALYFSALEQIDAGNYSCNVQSKVSD  376 (813)
Q Consensus       338 ~~~-~~~~~~~~~~------~~L~i~~v~~~D~G~Y~C~a~n~~g~  376 (813)
                      ... .........+      ..|.|..+..+|+|.|+|.|.|..+.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~  200 (211)
T 3tv3_L          155 KAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGST  200 (211)
T ss_dssp             CTTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEE
T ss_pred             CCCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCC
Confidence            321 0111112222      25889999999999999999997753

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.70  E-value=2.6e-16  Score=156.59  Aligned_cols=166  Identities=19%  Similarity=0.196  Sum_probs=112.4

Q ss_pred             ccccCeEEEEEeeccC--CCcEEEeecc--ccccceecc-------ccCCCCCceEEeeC------CeEEEeCCCCCCCC
Q psy14896        480 SILNDITLSCYAGGYP--NPSYEWFKED--YVQDRLVAN-------LIDPLSDKRFTLSG------GNLIINDPRQVEDR  542 (813)
Q Consensus       480 ~~g~~~~l~C~~~g~p--~~~v~W~k~~--~~~~~~~~~-------~~~~~~~~~~~~~~------~~l~i~~~~~~~d~  542 (813)
                      .+|+.++|.|.+.|.|  .+.|.|+|++  ...+.+...       ........++.+..      .+|.|.++ +.+|+
T Consensus        15 ~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v-~~~D~   93 (247)
T 2ghw_B           15 QPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSL-RAEDT   93 (247)
T ss_dssp             CTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSC-CGGGC
T ss_pred             ecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcC-CHHHC
Confidence            7899999999999987  6789999954  111111000       00112234444421      37999997 99999


Q ss_pred             ceEEEEEEcCcee-EEeecEEEEEeecc---------------cccccCCCceeccCCCceEEeCCCCCCCccEEEEcc-
Q psy14896        543 GSYHCKASNKFGS-IISESVQLAFGFIG---------------EFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWAR-  605 (813)
Q Consensus       543 G~Y~C~a~n~~g~-~~s~~~~l~v~~~p---------------~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k-  605 (813)
                      |.|+|.|.|..+. .....+.|.|..++               .+........+.+|+.++|.|.+ .+.|.+.|.|+| 
T Consensus        94 G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~  172 (247)
T 2ghw_B           94 AVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRA-SQSVRSNLAWYQQ  172 (247)
T ss_dssp             EEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEE-SSCCTTCEEEEEE
T ss_pred             EEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEe-CCCccceEEEEEE
Confidence            9999999998433 22344577776432               12223334557889999999999 688888999999 


Q ss_pred             -CCCCCc----------ccCCCeEEEeeC---ccEEEEeecccCCeeEEEEEEeee
Q psy14896        606 -DYFPNF----------VEEDKRVFVSYD---GALYFSALEQIDAGNYSCNVQSKV  647 (813)
Q Consensus       606 -~~~~~~----------~~~~~~~~~~~~---~~L~i~~~~~~d~G~Y~C~a~n~~  647 (813)
                       ++....          .....++.+..+   ++|+|.+++.+|+|.|+|.|.|..
T Consensus       173 ~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~  228 (247)
T 2ghw_B          173 KPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNW  228 (247)
T ss_dssp             CTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSS
T ss_pred             CCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCC
Confidence             554321          012345555433   359999999999999999999853

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.70  E-value=2.9e-16  Score=147.75  Aligned_cols=155  Identities=17%  Similarity=0.152  Sum_probs=113.4

Q ss_pred             ceeccCCCceEEeCCCCCCCcc--EEEEccCCCCCcccCCCeEE-EeeCccEEEEeecccCCeeEEEEEEeeecCccccC
Q psy14896        578 EIGNQNWGKAMFCDPPTNYPGV--NYYWARDYFPNFVEEDKRVF-VSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNG  654 (813)
Q Consensus       578 ~~~~~g~~~~l~C~~~~~~p~~--~v~W~k~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  654 (813)
                      ..+..|++++|.|.+  +.|.|  .|+|++.+.++     .+.. ....+.|.|.+++.+|+|.|.|.|.|..|..   .
T Consensus        17 v~v~~G~sv~L~C~a--~~p~P~~~i~W~~~~~~l-----~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~---~   86 (210)
T 1gsm_A           17 VAVALGASRQLTCRL--ACADRGASVQWRGLDTSL-----GAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTF---Q   86 (210)
T ss_dssp             EEEETTCCEEEEEEE--CCSSTTCEEEEESSTTTT-----CCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEE---E
T ss_pred             eEEeCCCCEEEEEEC--CCCCCCcceEEeeccccc-----CcEEecCCccEEEECccCcccCceEEEEEEeCCCce---E
Confidence            467889999999998  56666  99999976542     2333 2334569999999999999999999987653   3


Q ss_pred             ceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCC-CC----CeEEEEeCCcccCCCceee---------
Q psy14896        655 PFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGY-PV----PSYNWTRRGSPLPRNAYFE---------  720 (813)
Q Consensus       655 ~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~-P~----p~i~W~k~g~~l~~~~~~~---------  720 (813)
                      ..+.|+|..+|....+. |        .....|+.+ |.|.+.|. |.    ++|+|+|||.+|.......         
T Consensus        87 ~~~~ltV~~~P~~~~i~-~--------~~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~  156 (210)
T 1gsm_A           87 HTVQLLVYAFPNQLTVS-P--------AALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEE  156 (210)
T ss_dssp             EEEEEEEEBCCSEEEEE-S--------SSBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTC
T ss_pred             EEEEEEEEecCCCcEEc-c--------ceEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceeccccc
Confidence            45889999999776543 1        245678888 99999985 64    4899999999996543211         


Q ss_pred             ---ec------ceEEEECCCCCCCCEEEEEEEEcCCCceEE
Q psy14896        721 ---NF------NRILTIPNVKVEDQGEYICRASNDRSALES  752 (813)
Q Consensus       721 ---~~------~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~  752 (813)
                         ..      .++|.+.....+|.+.|+|+|.+.+-....
T Consensus       157 ~~~~~~~~~~vts~~~~~~~~~D~~~~~tC~a~~~L~~~~~  197 (210)
T 1gsm_A          157 PQGDEDVLFRVTERWRLPPLGTPVPPALYCQATMRLPGLEL  197 (210)
T ss_dssp             CSSCCCCCEEEEEEEECCCCCSSCCSEEEEEEEEEETTEEE
T ss_pred             ccCCcceEEEEEEEEeecCCcccCCceEEEEEEeeCCCCcc
Confidence               01      234555566677778999999998754433

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.70  E-value=1.9e-18  Score=170.52  Aligned_cols=166  Identities=14%  Similarity=0.135  Sum_probs=92.0

Q ss_pred             CCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcc------------cCCCeEEEee---CccEEEEeecccCCeeE
Q psy14896        575 RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFV------------EEDKRVFVSY---DGALYFSALEQIDAGNY  639 (813)
Q Consensus       575 ~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~------------~~~~~~~~~~---~~~L~i~~~~~~d~G~Y  639 (813)
                      +....+.+|++++|.|.+ .+.|.+.|.|+|++.....            ....|+....   +.+|.|.+++.+|+|.|
T Consensus        30 p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y  108 (233)
T 3bqu_C           30 PASLSMSIGEKVTIRCIT-STDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSEDVADY  108 (233)
T ss_dssp             CSBC-------CCEEEEE-EEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CCCCSEE
T ss_pred             CCeEEEecCCCEEEEEec-CCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHHHCEEE
Confidence            344567889999999998 6777788999986421100            1123333332   23699999999999999


Q ss_pred             EEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCC-CC-eEEEEeCCcccCCC-
Q psy14896        640 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYP-VP-SYNWTRRGSPLPRN-  716 (813)
Q Consensus       640 ~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P-~p-~i~W~k~g~~l~~~-  716 (813)
                      .|.|.|..+......  ..|.|...+....+..     ......+.+|+.++|.|.+.|.+ ++ .|+|+|||.++..+ 
T Consensus       109 ~C~~~~~~~~~~~~~--~~l~V~~~~~~p~v~~-----~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~  181 (233)
T 3bqu_C          109 YCLQSDNLPYTFGGG--TNLEIKRADAAPTVSI-----FPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGV  181 (233)
T ss_dssp             EEEECSSSSCCBCCC--CBC---CCCBCCEEEE-----ECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CCE
T ss_pred             EEEEecCCceeecCC--EEEEEeCCCCCCEEEE-----eCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCCCc
Confidence            999998765322221  3455544221111111     00011234699999999999854 43 79999999988765 


Q ss_pred             cee----e------ecceEEEECCCCCCCCEEEEEEEEcCCC
Q psy14896        717 AYF----E------NFNRILTIPNVKVEDQGEYICRASNDRS  748 (813)
Q Consensus       717 ~~~----~------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G  748 (813)
                      ...    .      ...+.|.|..+..+|+|.|+|.|.|...
T Consensus       182 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  223 (233)
T 3bqu_C          182 LNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS  223 (233)
T ss_dssp             EEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC--
T ss_pred             eEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            111    0      1134699999999999999999999754

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.70  E-value=8.7e-17  Score=156.77  Aligned_cols=174  Identities=17%  Similarity=0.203  Sum_probs=110.0

Q ss_pred             CCceeecCCCccccccEEEEeeeccCC--CCeEEEeec--ccccccccc-------cccccCCCccEEee------CCeE
Q psy14896        196 PTDVVFDLSKRSILNDITLSCYAGGYP--NPSYEWFKE--DYVQDRLVA-------NLIDPLSDKRFTLS------GGNL  258 (813)
Q Consensus       196 p~~~~v~~g~~~~g~~v~l~C~~~g~P--~p~v~W~k~--g~~l~~~~~-------~~~~~~~~~~~~~~------~~~l  258 (813)
                      |....+.+|     ++++|.|.+.|.|  .+.|.|||+  |..+.....       .........|+.+.      +++|
T Consensus         7 p~~~~v~~G-----~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L   81 (219)
T 1c1e_H            7 SGPELKKPG-----ETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYL   81 (219)
T ss_dssp             CCCEEECTT-----CCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEE
T ss_pred             CCCeEecCC-----CcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEE
Confidence            455666666     7799999999865  689999998  433311000       00011123455543      2478


Q ss_pred             EEcCCccccCCeeEEEEeecCcee---eEeeeeEEeeeee----cccccCCCCceeecCCCeEEEecCCCCCCcc-eEEE
Q psy14896        259 IINDPRQVEDRGSYHCKASNKFGS---IISESVQLAFGFI----GEFNLKRAPEIGNQNWGKAMFCDPPTNYPGV-NYYW  330 (813)
Q Consensus       259 ~i~~~~~~~d~G~Y~C~a~n~~g~---~~s~~~~l~v~~~----~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~-~v~W  330 (813)
                      .|.+. +.+|+|.|+|.|.|..+.   ..+..+.|.|...    |.+........+.+|+.++|.|.+.++.|.| .|+|
T Consensus        82 ~I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W  160 (219)
T 1c1e_H           82 QINNL-KNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTW  160 (219)
T ss_dssp             EECSC-CGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEE
T ss_pred             EECCC-CcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEE
Confidence            88885 899999999999997631   2234566776553    2222222233456788899999975448988 9999


Q ss_pred             eeccccccccCCccEEEc----cCccEEEeeeeecCCeeeEEEEeeeccc
Q psy14896        331 ARDYFPNFVEEDKRVFVS----YDGALYFSALEQIDAGNYSCNVQSKVSD  376 (813)
Q Consensus       331 ~k~~~~~~~~~~~~~~~~----~~~~L~i~~v~~~D~G~Y~C~a~n~~g~  376 (813)
                      +|+|..+...........    ..+.|.| .....|.|.|+|.|.|..+.
T Consensus       161 ~~~g~~~~~~~~~~~~~~~~~~~~s~L~i-~~~~~d~g~Y~C~a~n~~~~  209 (219)
T 1c1e_H          161 NSGSLSSGVHTFPAVLQSDLYTLSSSVTV-PSSPRPSETVTCNVAHPASS  209 (219)
T ss_dssp             GGGTBCTTEEECCCEESSSCEEEEEEEEE-ESSSTTTSCCEEEEEEGGGT
T ss_pred             EeCCcccceEecCCcccCCeEEEEEEEEE-ecccCCCCEEEEEEEeCCCC
Confidence            999986422211111111    1135888 44444669999999998764

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.69  E-value=7.7e-17  Score=160.42  Aligned_cols=162  Identities=23%  Similarity=0.278  Sum_probs=108.7

Q ss_pred             CCceeccCCCceEEeCCCCCCC-----ccEEEEccCCC--CC--cc--------cCCCeEEEeeCc---cEEEEeecccC
Q psy14896        576 APEIGNQNWGKAMFCDPPTNYP-----GVNYYWARDYF--PN--FV--------EEDKRVFVSYDG---ALYFSALEQID  635 (813)
Q Consensus       576 ~~~~~~~g~~~~l~C~~~~~~p-----~~~v~W~k~~~--~~--~~--------~~~~~~~~~~~~---~L~i~~~~~~d  635 (813)
                      ....+.+|+.++|.|.+ .+.|     .+.|.|+|++.  ..  .+        ....|+.+..++   +|+|.+++.+|
T Consensus         9 ~~~~v~~G~~v~L~C~~-~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   87 (247)
T 1svz_A            9 LYLPVSLGDQASISCRS-SQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAED   87 (247)
T ss_dssp             SEEEECTTCCEEEEEEE-SSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CeEEecCCCCEEEEEeC-CCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCCCHHH
Confidence            44567889999999999 5666     68999999532  11  00        013455554332   69999999999


Q ss_pred             CeeEEEEEEeeecCccccCceeeEEEccCCC-----------ccccccCCCCCCCCCcCCCCCCeEEEEEEecCCC--CC
Q psy14896        636 AGNYSCNVQSKVSDTGRNGPFFPLKVFPHSN-----------FQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYP--VP  702 (813)
Q Consensus       636 ~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~-----------~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P--~p  702 (813)
                      +|.|.|.|.|..+...  .....|.|..++.           ...+..+      ....+.+|++++|.|.+.+.|  .+
T Consensus        88 ~G~Y~C~~~n~~~~~~--~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~G~~v~L~C~~~~~~~~~~  159 (247)
T 1svz_A           88 LGIYYCFQGSHFPPTF--GGGTKLEIKGGGGSGGGGSGGGGSEVQLQQS------GPELKKPGETVKISCKATNYAFTDY  159 (247)
T ss_dssp             CEEEEEEECSSSSCEE--CCCEEEEEC---------------CCEEEEC------CCEEECTTCCEEEEEEEESSCGGGS
T ss_pred             CEEEEEEEccCCccEE--CCCEEEEEECCccccccccccccCceEEeCC------CceeecCCCcEEEEEEEcCcccCCc
Confidence            9999999998754311  1225677776532           0011111      113589999999999999885  56


Q ss_pred             eEEEEeCC--cccC------C-----------Cceee------ecceEEEECCCCCCCCEEEEEEEEcC
Q psy14896        703 SYNWTRRG--SPLP------R-----------NAYFE------NFNRILTIPNVKVEDQGEYICRASND  746 (813)
Q Consensus       703 ~i~W~k~g--~~l~------~-----------~~~~~------~~~~~L~i~~v~~~d~G~Y~C~a~N~  746 (813)
                      .+.|+|++  ..+.      .           ..++.      ....+|+|.+++.+|+|.|.|.|.|.
T Consensus       160 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          160 SMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             CEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred             EEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence            99999973  2110      0           11221      12358999999999999999999995

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.69  E-value=3e-16  Score=156.98  Aligned_cols=187  Identities=16%  Similarity=0.198  Sum_probs=117.4

Q ss_pred             CceeecCCCccccccEEEEeeeccCC--CCeEEEeecc--cccccccc-------cccccCCCccEEee------CCeEE
Q psy14896        197 TDVVFDLSKRSILNDITLSCYAGGYP--NPSYEWFKED--YVQDRLVA-------NLIDPLSDKRFTLS------GGNLI  259 (813)
Q Consensus       197 ~~~~v~~g~~~~g~~v~l~C~~~g~P--~p~v~W~k~g--~~l~~~~~-------~~~~~~~~~~~~~~------~~~l~  259 (813)
                      ....+.+|     ++|+|.|.+.+.|  .+.|.|||..  ..+.....       .........|+.+.      ..+|.
T Consensus        10 ~~~~v~~G-----~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   84 (256)
T 3umt_A           10 GLELVKPG-----ASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLE   84 (256)
T ss_dssp             CCEEECTT-----CCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEE
T ss_pred             CceEEcCC-----CCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEE
Confidence            34556566     7799999998866  7899999853  22111000       00111123445443      12388


Q ss_pred             EcCCccccCCeeEEEEeecC----ceeeEeeeeEEeeee----------------ecccccCCCCceeecCCCeEEEecC
Q psy14896        260 INDPRQVEDRGSYHCKASNK----FGSIISESVQLAFGF----------------IGEFNLKRAPEIGNQNWGKAMFCDP  319 (813)
Q Consensus       260 i~~~~~~~d~G~Y~C~a~n~----~g~~~s~~~~l~v~~----------------~~~~~~~~~~~~~~~~~~~~l~C~~  319 (813)
                      |.+. +.+|+|.|.|.|.|.    .+.. +..+.|.|..                .+.+...+....+.+|+.++|.|.+
T Consensus        85 I~~v-~~~DsG~Y~C~~~~~~~~~~~~~-~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~  162 (256)
T 3umt_A           85 LRSL-TSEDSAVYYCARDDRYPAWFAYW-GQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRA  162 (256)
T ss_dssp             ECSC-CGGGCEEEEEEECCSTTCCSCEE-CCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEE
T ss_pred             ECCC-CcccCEEEEEEEccCCCccccEE-CCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEE
Confidence            8875 899999999999987    2222 4456677764                2223333445678899999999996


Q ss_pred             CCCCCcceEEEeecc--cccc-c---------cCCccEEEccCc---cEEEeeeeecCCeeeEEEEeeeccccCCCCCce
Q psy14896        320 PTNYPGVNYYWARDY--FPNF-V---------EEDKRVFVSYDG---ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFF  384 (813)
Q Consensus       320 ~~~~p~~~v~W~k~~--~~~~-~---------~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~  384 (813)
                       .+.|.+.+.|+|+.  .... +         ....|+.....+   +|.|.+++.+|+|.|+|.|.|...  ...+...
T Consensus       163 -~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~--~~fg~gt  239 (256)
T 3umt_A          163 -SQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSP--PTFGGGT  239 (256)
T ss_dssp             -SSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSS--CEECCCE
T ss_pred             -ecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCC--cEECCCE
Confidence             55677899999853  2211 0         012444443332   599999999999999999998532  2334457


Q ss_pred             eeEEccCCc
Q psy14896        385 PLKVFPHSN  393 (813)
Q Consensus       385 ~l~v~~~~~  393 (813)
                      .|.|...+.
T Consensus       240 ~L~V~~~~~  248 (256)
T 3umt_A          240 KLEIKRAAA  248 (256)
T ss_dssp             EEEEC----
T ss_pred             EEEEECCCc
Confidence            888876543

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.69  E-value=8.6e-17  Score=160.98  Aligned_cols=179  Identities=15%  Similarity=0.135  Sum_probs=115.9

Q ss_pred             ccccccCCCceeccCCCceEEeCCCCC--CCccEEEEccCC--CCCc---------------ccCCCeEEEeeCc-----
Q psy14896        569 GEFNLKRAPEIGNQNWGKAMFCDPPTN--YPGVNYYWARDY--FPNF---------------VEEDKRVFVSYDG-----  624 (813)
Q Consensus       569 p~~~~~~~~~~~~~g~~~~l~C~~~~~--~p~~~v~W~k~~--~~~~---------------~~~~~~~~~~~~~-----  624 (813)
                      +.+........+.+|+.++|.|.+ .+  .+.+.+.|+|..  ....               .....|+.+..++     
T Consensus         7 ~~~~~~~~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   85 (256)
T 3juy_B            7 QVQLVQSGAEVKKPGASVKVSCQA-SGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTA   85 (256)
T ss_dssp             CCEEEECCCEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEE
T ss_pred             eEEEEecCCceecCCCeEEEEEEe-ecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEE
Confidence            344455667788999999999998 44  367899999743  1100               0112466665332     


Q ss_pred             cEEEEeecccCCeeEEEEEEeeec---------CccccCceeeEEEccCCCcccc-------ccCCCCCCCCCcCCCCCC
Q psy14896        625 ALYFSALEQIDAGNYSCNVQSKVS---------DTGRNGPFFPLKVFPHSNFQQL-------KFPNNFPKTFPEAPKAGD  688 (813)
Q Consensus       625 ~L~i~~~~~~d~G~Y~C~a~n~~g---------~~~~~~~~~~l~v~~~p~~~~~-------~~p~~~~~~~~~~~~~G~  688 (813)
                      +|+|.+++.+|+|.|.|.|.|...         ..........|.|...+.....       ..+.....+....+.+|+
T Consensus        86 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~  165 (256)
T 3juy_B           86 YMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPGE  165 (256)
T ss_dssp             EEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTTS
T ss_pred             EEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCCC
Confidence            499999999999999999998710         0111122356778765431100       000011122235688999


Q ss_pred             eEEEEEEecCCCC-CeEEEEeC--CcccC------------CCcee----eecceEEEECCCCCCCCEEEEEEEEcCCC
Q psy14896        689 KVRLECVAFGYPV-PSYNWTRR--GSPLP------------RNAYF----ENFNRILTIPNVKVEDQGEYICRASNDRS  748 (813)
Q Consensus       689 ~v~l~C~~~g~P~-p~i~W~k~--g~~l~------------~~~~~----~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G  748 (813)
                      +++|.|.+.+.|. +.+.|+|.  +..+.            ...++    .....+|+|.+++.+|+|.|.|.|.|..+
T Consensus       166 ~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~  244 (256)
T 3juy_B          166 RATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGASS  244 (256)
T ss_dssp             CEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECCSSC
T ss_pred             CEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEeeCCC
Confidence            9999999999886 89999993  33221            11122    12245699999999999999999999643

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.69  E-value=4.2e-16  Score=145.86  Aligned_cols=156  Identities=14%  Similarity=0.148  Sum_probs=106.1

Q ss_pred             ceeecCCCccccccEEEEeeecc-CCCCeEEEeec-cccccccccc----ccccCCCccEEe--eCCeEEEcCCccccCC
Q psy14896        198 DVVFDLSKRSILNDITLSCYAGG-YPNPSYEWFKE-DYVQDRLVAN----LIDPLSDKRFTL--SGGNLIINDPRQVEDR  269 (813)
Q Consensus       198 ~~~v~~g~~~~g~~v~l~C~~~g-~P~p~v~W~k~-g~~l~~~~~~----~~~~~~~~~~~~--~~~~l~i~~~~~~~d~  269 (813)
                      .+.+.+|     ++|+|.|.+.+ .+.+.|.|+|+ +..+......    ..+.....|+.+  .+++|.|.+. +.+|+
T Consensus         8 ~v~v~~G-----~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v-~~~D~   81 (180)
T 2dru_A            8 NVNAITG-----SNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNV-SKEDR   81 (180)
T ss_dssp             EEEEETT-----SCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSC-CGGGC
T ss_pred             eEEEEeC-----CCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCC-CHHHC
Confidence            4555555     77999999865 34789999995 4333211100    111222256665  4788999986 89999


Q ss_pred             eeEEEEeecCceeeEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCccEEEcc
Q psy14896        270 GSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSY  349 (813)
Q Consensus       270 G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~  349 (813)
                      |.|+|.+.+..  ..+..+.|.|..++.     .|.....+..++|.|.+..| |.+.++|+|++.++.        ...
T Consensus        82 G~Y~C~v~~~~--~~~~~~~L~V~~~~~-----~P~i~~~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~--------~~~  145 (180)
T 2dru_A           82 GDYYMRMLHET--EDQWKITMEVYEMVS-----KPMIYWECSNATLTCEVLEG-TDVELKLYQGKEHLR--------SLR  145 (180)
T ss_dssp             EEEEEEEESSS--EEEEEEEEEEECCCC-----CCEEEEEGGGTEEEEECSSC-TTCEEEEEETTEEEE--------EES
T ss_pred             eEEEEEEEcCC--eEEEEEEEEEECCCC-----CCEEEecCCCEEEEEEeCCC-CCCEEEEEECCeECc--------CCC
Confidence            99999998766  335677788765421     12223345668999997566 999999999998742        123


Q ss_pred             CccEEEeeeeecCCeeeEEEEeeecccc
Q psy14896        350 DGALYFSALEQIDAGNYSCNVQSKVSDT  377 (813)
Q Consensus       350 ~~~L~i~~v~~~D~G~Y~C~a~n~~g~~  377 (813)
                      +.+|.+..  .+|+|.|+|.|.|..+..
T Consensus       146 ~~~l~~~~--~~d~g~Y~C~a~N~~~~~  171 (180)
T 2dru_A          146 QKTMSYQW--TNLRAPFKCKAVNRVSQE  171 (180)
T ss_dssp             SSEEEEEC--SCCSSCEEEEEEETTEEE
T ss_pred             CCEEEEEE--hhcCccEEEEEecCcCcc
Confidence            34566633  789999999999998753

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.69  E-value=4.4e-16  Score=154.91  Aligned_cols=177  Identities=19%  Similarity=0.261  Sum_probs=115.7

Q ss_pred             ceeeCCCceeecCCCccccccEEEEeeeccCC-----CCeEEEeecc--cccccccc--cccccCCCccEEee----CCe
Q psy14896        191 YFIKQPTDVVFDLSKRSILNDITLSCYAGGYP-----NPSYEWFKED--YVQDRLVA--NLIDPLSDKRFTLS----GGN  257 (813)
Q Consensus       191 ~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P-----~p~v~W~k~g--~~l~~~~~--~~~~~~~~~~~~~~----~~~  257 (813)
                      .++..|.++.+.+|     ++++|.|.+.+.|     .+.|.|||+.  ..+.....  .........++...    ..+
T Consensus         3 ~v~~~p~~~~v~~G-----~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~   77 (247)
T 1svz_A            3 LMTQTPLYLPVSLG-----DQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFT   77 (247)
T ss_dssp             CEEEECSEEEECTT-----CCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEE
T ss_pred             cEEecCCeEEecCC-----CCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEE
Confidence            35566778888777     6799999999888     6899999964  21110000  00011123455443    236


Q ss_pred             EEEcCCccccCCeeEEEEeecCceeeEeeeeEEeeeeec------------ccc-cCCCCceeecCCCeEEEecCCCCC-
Q psy14896        258 LIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIG------------EFN-LKRAPEIGNQNWGKAMFCDPPTNY-  323 (813)
Q Consensus       258 l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~------------~~~-~~~~~~~~~~~~~~~l~C~~~~~~-  323 (813)
                      |.|.+. +.+|+|.|+|.|.|..+...+..+.|.|..++            ++. .......+.+|+.++|.|.+.... 
T Consensus        78 L~I~~v-~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~  156 (247)
T 1svz_A           78 LKISRV-EAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAF  156 (247)
T ss_dssp             EEESSC-CGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCG
T ss_pred             EEECCC-CHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCccc
Confidence            888885 89999999999999866544455677776542            222 223445688899999999974332 


Q ss_pred             CcceEEEeecc--cccc-c--------------cCCccEEEcc-----CccEEEeeeeecCCeeeEEEEeee
Q psy14896        324 PGVNYYWARDY--FPNF-V--------------EEDKRVFVSY-----DGALYFSALEQIDAGNYSCNVQSK  373 (813)
Q Consensus       324 p~~~v~W~k~~--~~~~-~--------------~~~~~~~~~~-----~~~L~i~~v~~~D~G~Y~C~a~n~  373 (813)
                      |.+.+.|+|++  .... +              ....|+.+..     ..+|.|.+++.+|+|.|+|.|.|.
T Consensus       157 ~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          157 TDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             GGSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred             CCcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence            35799999974  2110 0              0134555433     237999999999999999999985

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.69  E-value=9.9e-17  Score=156.21  Aligned_cols=168  Identities=16%  Similarity=0.225  Sum_probs=114.1

Q ss_pred             CceeccCCCceEEeCCCCCCC--ccEEEEccCCC--CC--cc-------------cCCCeEEEeeC-----ccEEEEeec
Q psy14896        577 PEIGNQNWGKAMFCDPPTNYP--GVNYYWARDYF--PN--FV-------------EEDKRVFVSYD-----GALYFSALE  632 (813)
Q Consensus       577 ~~~~~~g~~~~l~C~~~~~~p--~~~v~W~k~~~--~~--~~-------------~~~~~~~~~~~-----~~L~i~~~~  632 (813)
                      +..+.+|+.++|.|.+ .+.+  .+.|.|||...  ..  .+             ....|+.+..+     .+|+|.+++
T Consensus         9 ~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   87 (220)
T 2fbj_H            9 GGLVQPGGSLKLSCAA-SGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVR   87 (220)
T ss_dssp             CEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCC
T ss_pred             CeEecCCCcEEEEEEe-cCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCC
Confidence            4567889999999998 5555  57899998632  10  00             11356666643     369999999


Q ss_pred             ccCCeeEEEEEEeeecCccccCceeeEEEccCCC-ccccccCCCCCCCCCcCCCCCCeEEEEEEecCC-CC--CeEEEEe
Q psy14896        633 QIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSN-FQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGY-PV--PSYNWTR  708 (813)
Q Consensus       633 ~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~-~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~-P~--p~i~W~k  708 (813)
                      .+|+|.|.|.+.|..+..........|.|...+. .+.+..     .. ...+.+|+.++|.|.+.|. |.  +.|+|+|
T Consensus        88 ~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~-----~~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~  161 (220)
T 2fbj_H           88 SEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYP-----LT-LPPALSSDPVIIGCLIHDYFPSGTMNVTWGK  161 (220)
T ss_dssp             GGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEE-----EC-CCSSSCCSSEEEEEEEEEEBSCCCEEEEESC
T ss_pred             hhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEE-----ee-cccccCCCcEEEEEEEEeEECCCcEEEEEec
Confidence            9999999999998643200011225677775321 111111     01 2346789999999999987 76  7999999


Q ss_pred             CCcccCC--Cc-eee-----ecceEEEECCCCCCCCEEEEEEEEcCCCceE
Q psy14896        709 RGSPLPR--NA-YFE-----NFNRILTIPNVKVEDQGEYICRASNDRSALE  751 (813)
Q Consensus       709 ~g~~l~~--~~-~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~  751 (813)
                      +|..+..  .. ...     ...+.|.|.....+|+|.|+|.|.|..|...
T Consensus       162 ~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          162 SGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             CCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred             CCEecceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence            9987621  00 000     1124699999999999999999999988754

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.69  E-value=2.5e-17  Score=163.93  Aligned_cols=168  Identities=13%  Similarity=0.206  Sum_probs=113.6

Q ss_pred             CCceeccCCCceEEeCCCCCCCccEEEEccC----------------CCCCcc-cCCCeEEEee----CccEEEEeeccc
Q psy14896        576 APEIGNQNWGKAMFCDPPTNYPGVNYYWARD----------------YFPNFV-EEDKRVFVSY----DGALYFSALEQI  634 (813)
Q Consensus       576 ~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~----------------~~~~~~-~~~~~~~~~~----~~~L~i~~~~~~  634 (813)
                      ....+.+|+.++|.|.+ .+.+.+.|.|+|.                +..... ....|+.+..    +.+|.|.+++.+
T Consensus         9 ~~~~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~   87 (246)
T 4dzb_B            9 SWVISKSGTSVKIECRS-LDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPE   87 (246)
T ss_dssp             SEEEEETTSCEEEEEEE-SSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECSCCGG
T ss_pred             cEEEEeCCCcEEEEeEe-cCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECCCCHH
Confidence            34567889999999998 6778999999992                211000 0114555543    236999999999


Q ss_pred             CCeeEEEEEEeeecCc-cccCceeeEEEcc------CCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCC--eEE
Q psy14896        635 DAGNYSCNVQSKVSDT-GRNGPFFPLKVFP------HSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVP--SYN  705 (813)
Q Consensus       635 d~G~Y~C~a~n~~g~~-~~~~~~~~l~v~~------~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p--~i~  705 (813)
                      |+|.|.|.|.|..+.. ........|.|..      +|.+...       ......+.+|+.++|.|.+.|.|++  .|+
T Consensus        88 D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~-------~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~  160 (246)
T 4dzb_B           88 DSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVF-------EPSEAEISHTQKATLVCLATGFYPDHVELS  160 (246)
T ss_dssp             GCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEE-------CCCHHHHHHHSEEEEEEEEEEEBSSCEEEE
T ss_pred             HCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEee-------cCCchhccCCCcEEEEEEEccCcCCceEEE
Confidence            9999999999865421 1112234577764      2221110       1111335669999999999997765  899


Q ss_pred             EEeCCcccCCCceee-----------ec----ceEEEECCCCCCC-CEEEEEEEEcCCCceE
Q psy14896        706 WTRRGSPLPRNAYFE-----------NF----NRILTIPNVKVED-QGEYICRASNDRSALE  751 (813)
Q Consensus       706 W~k~g~~l~~~~~~~-----------~~----~~~L~i~~v~~~d-~G~Y~C~a~N~~G~~~  751 (813)
                      |+|||..|.......           ..    .+.|.|.....+| +|.|+|.|.|......
T Consensus       161 W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~~~  222 (246)
T 4dzb_B          161 WWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  222 (246)
T ss_dssp             EEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred             EEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCCCc
Confidence            999999887643221           11    2348899888888 9999999999865443

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.69  E-value=3e-16  Score=157.25  Aligned_cols=196  Identities=14%  Similarity=0.204  Sum_probs=113.9

Q ss_pred             CceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecc--cccccccccc-------ccc-CCCccEEe-----e
Q psy14896        190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKED--YVQDRLVANL-------IDP-LSDKRFTL-----S  254 (813)
Q Consensus       190 P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g--~~l~~~~~~~-------~~~-~~~~~~~~-----~  254 (813)
                      |.++..|..+.+.+|     ++|+|.|.+.+.|.+.+.|||..  ..........       ... ..+.+...     .
T Consensus         3 ~~v~~~p~~~~v~~G-----~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~   77 (259)
T 3omz_A            3 SNLEGRTKSVIRQTG-----SSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRK   77 (259)
T ss_dssp             --------CEEEETT-----CCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--C
T ss_pred             cccccCCceeEecCC-----CcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCC
Confidence            556667788888777     67999999999899999999942  2111000000       000 01122221     2


Q ss_pred             CCeEEEcCCccccCCeeEEEEeecCcee--eEeeeeEEeeeee-----------------cccccCCCCceeecCCCeEE
Q psy14896        255 GGNLIINDPRQVEDRGSYHCKASNKFGS--IISESVQLAFGFI-----------------GEFNLKRAPEIGNQNWGKAM  315 (813)
Q Consensus       255 ~~~l~i~~~~~~~d~G~Y~C~a~n~~g~--~~s~~~~l~v~~~-----------------~~~~~~~~~~~~~~~~~~~l  315 (813)
                      +.+|.|.+. +.+|+|.|+|.|.|..+.  ..+..+.|.|...                 +.+...+....+.+|+.++|
T Consensus        78 ~~~L~I~~v-~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L  156 (259)
T 3omz_A           78 NLRMILRNL-IENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTL  156 (259)
T ss_dssp             CCEEEESSC-CGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEE
T ss_pred             eEEEEECCC-CcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEE
Confidence            346888885 899999999999987662  2345566777653                 22333345567889999999


Q ss_pred             EecCCCCCCcceEEEeeccc--ccc-c---------cCCccEEEcc-----CccEEEeeeeecCCeeeEEEEeeeccc--
Q psy14896        316 FCDPPTNYPGVNYYWARDYF--PNF-V---------EEDKRVFVSY-----DGALYFSALEQIDAGNYSCNVQSKVSD--  376 (813)
Q Consensus       316 ~C~~~~~~p~~~v~W~k~~~--~~~-~---------~~~~~~~~~~-----~~~L~i~~v~~~D~G~Y~C~a~n~~g~--  376 (813)
                      .|.+....|.+.+.|+|.+.  .+. +         ....|+.+..     ...|.|.+++.+|+|.|.|.+.+..+.  
T Consensus       157 ~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~  236 (259)
T 3omz_A          157 NCLYETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGESLTRAD  236 (259)
T ss_dssp             CCEEECCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEESCSSTTC
T ss_pred             EEECCCccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeCccCCCC
Confidence            99865445889999998642  110 0         1124555543     236999999999999999999753211  


Q ss_pred             cCCCCCceeeEEccC
Q psy14896        377 TGRNGPFFPLKVFPH  391 (813)
Q Consensus       377 ~~~~s~~~~l~v~~~  391 (813)
                      ......-..|.|...
T Consensus       237 ~~~fg~GT~l~v~~~  251 (259)
T 3omz_A          237 KLIFGKGTRVTVEPR  251 (259)
T ss_dssp             CCEECCCEEEEEEC-
T ss_pred             ceEECCCCEEEEeeC
Confidence            112233456666544

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.69  E-value=1.6e-17  Score=163.72  Aligned_cols=180  Identities=18%  Similarity=0.247  Sum_probs=99.4

Q ss_pred             CceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeeccc--ccccccc--cccccCCCccEEee----CCeEEEc
Q psy14896        190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDY--VQDRLVA--NLIDPLSDKRFTLS----GGNLIIN  261 (813)
Q Consensus       190 P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~--~l~~~~~--~~~~~~~~~~~~~~----~~~l~i~  261 (813)
                      +.++..|..+.+.+|     ++++|.|.+.+.|.+.|.|||++.  .+.....  .........++...    +.+|.|.
T Consensus        24 ~~v~~~p~~~~v~~G-----~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~   98 (233)
T 3bqu_C           24 TTVTQSPASLSMSIG-----EKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIE   98 (233)
T ss_dssp             CCEEEECSBC------------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC--
T ss_pred             eeEEEcCCeEEEecC-----CCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEEC
Confidence            455666777777666     779999999998888999999752  1100000  00000112232221    2267777


Q ss_pred             CCccccCCeeEEEEeecCceeeEeeeeEEeeee---ecccccCCCCceeecCCCeEEEecCCCCCCcc-eEEEeeccccc
Q psy14896        262 DPRQVEDRGSYHCKASNKFGSIISESVQLAFGF---IGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGV-NYYWARDYFPN  337 (813)
Q Consensus       262 ~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~---~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~-~v~W~k~~~~~  337 (813)
                      +. +.+|+|.|+|.|.|..+...+..+.|.|..   +|.+.+.........|+.++|.|.+.+..|.+ +++|+|||+++
T Consensus        99 ~v-~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~  177 (233)
T 3bqu_C           99 NM-LSEDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER  177 (233)
T ss_dssp             ----CCCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC----
T ss_pred             CC-CHHHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeC
Confidence            75 899999999999987765434445566654   33333333333445688899999975445653 89999999874


Q ss_pred             cccCCc--cEEEccC------ccEEEeeeeecCCeeeEEEEeeecc
Q psy14896        338 FVEEDK--RVFVSYD------GALYFSALEQIDAGNYSCNVQSKVS  375 (813)
Q Consensus       338 ~~~~~~--~~~~~~~------~~L~i~~v~~~D~G~Y~C~a~n~~g  375 (813)
                      ......  ......+      +.|.|..+..+|+|.|+|.|.|...
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  223 (233)
T 3bqu_C          178 QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS  223 (233)
T ss_dssp             -CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC--
T ss_pred             CCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            322000  1111122      2588999999999999999999754

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.69  E-value=5.7e-16  Score=155.37  Aligned_cols=194  Identities=16%  Similarity=0.267  Sum_probs=123.8

Q ss_pred             CceeeCCCceeecCCCccccccEEEEeeeccCC------CCeEEEeecc--cccccccc--cccccCCCccEEee----C
Q psy14896        190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYP------NPSYEWFKED--YVQDRLVA--NLIDPLSDKRFTLS----G  255 (813)
Q Consensus       190 P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P------~p~v~W~k~g--~~l~~~~~--~~~~~~~~~~~~~~----~  255 (813)
                      +.++..|..+.+.+|     ++|+|.|.+.+.|      .+.|.|||+.  ..+.....  .........|+...    .
T Consensus         6 ~~v~q~p~~v~v~~G-----~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~   80 (264)
T 2gjj_A            6 IVLTQTPSSLPVSVG-----EKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTD   80 (264)
T ss_dssp             CCEEEECSEEEEETT-----CCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTE
T ss_pred             cceEecCCeEEecCC-----CcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCE
Confidence            566777888888777     6799999999887      6899999963  22211000  00001123455543    2


Q ss_pred             CeEEEcCCccccCCeeEEEEeecCceeeEeeeeEEeeeeec------------------cccc-CCCCceeecCCCeEEE
Q psy14896        256 GNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIG------------------EFNL-KRAPEIGNQNWGKAMF  316 (813)
Q Consensus       256 ~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~------------------~~~~-~~~~~~~~~~~~~~l~  316 (813)
                      .+|.|.+. +.+|+|.|.|.|.|..+...+..+.|.|..++                  .+.+ ......+.+|+.++|.
T Consensus        81 ~~L~I~~v-~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~  159 (264)
T 2gjj_A           81 FTLTIGSV-KAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKIS  159 (264)
T ss_dssp             EEEEESSC-CGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEE
T ss_pred             EEEEECCC-CHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEE
Confidence            36888885 89999999999998765433455677776543                  2222 2334567889999999


Q ss_pred             ecCCCCCC--cceEEEeecc--cccc-cc--------------CCccEEEcc-----CccEEEeeeeecCCeeeEEEEee
Q psy14896        317 CDPPTNYP--GVNYYWARDY--FPNF-VE--------------EDKRVFVSY-----DGALYFSALEQIDAGNYSCNVQS  372 (813)
Q Consensus       317 C~~~~~~p--~~~v~W~k~~--~~~~-~~--------------~~~~~~~~~-----~~~L~i~~v~~~D~G~Y~C~a~n  372 (813)
                      |.+. +.|  .+.+.|+|+.  .... +.              ...|+.+..     ..+|.|.+++.+|+|.|+|.|.|
T Consensus       160 C~~~-~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n  238 (264)
T 2gjj_A          160 CKAS-GYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSG  238 (264)
T ss_dssp             EEEE-SSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             EEEe-CCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEec
Confidence            9964 444  3899999973  2211 10              023444321     23799999999999999999998


Q ss_pred             ec--cccCCCCCceeeEEcc
Q psy14896        373 KV--SDTGRNGPFFPLKVFP  390 (813)
Q Consensus       373 ~~--g~~~~~s~~~~l~v~~  390 (813)
                      ..  ......+....|+|..
T Consensus       239 ~~~~~~~~~fg~gt~l~v~~  258 (264)
T 2gjj_A          239 NYEEYAMDYWGQGTSVTVSS  258 (264)
T ss_dssp             SGGGCSCCCBCCCEEEEEC-
T ss_pred             CCCCcceEEECCCEEEEEec
Confidence            52  1111123345666653

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.68  E-value=6.5e-17  Score=158.20  Aligned_cols=167  Identities=19%  Similarity=0.292  Sum_probs=112.1

Q ss_pred             CceeccCCCceEEeCCCCCCC--ccEEEEccCC--CCCc-c--------------cCCCeEEEeeC-----ccEEEEeec
Q psy14896        577 PEIGNQNWGKAMFCDPPTNYP--GVNYYWARDY--FPNF-V--------------EEDKRVFVSYD-----GALYFSALE  632 (813)
Q Consensus       577 ~~~~~~g~~~~l~C~~~~~~p--~~~v~W~k~~--~~~~-~--------------~~~~~~~~~~~-----~~L~i~~~~  632 (813)
                      +..+.+|+.++|.|.+ .+.|  .+.|.|+|+.  .... +              ....|+.+..+     .+|+|.+++
T Consensus         9 ~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (225)
T 1op3_H            9 GGLVKAGGSLILSCGV-SNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMR   87 (225)
T ss_dssp             CEEEETTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CeEecCCCCEEEEEEe-cCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCCC
Confidence            4567889999999998 5665  6889999864  2110 0              12356666542     469999999


Q ss_pred             ccCCeeEEEEEEeeecC----c-cccCceeeEEEccCC-Cccccc-cCCCCCCCCCcCCCCCCeEEEEEEecCC-CCC-e
Q psy14896        633 QIDAGNYSCNVQSKVSD----T-GRNGPFFPLKVFPHS-NFQQLK-FPNNFPKTFPEAPKAGDKVRLECVAFGY-PVP-S  703 (813)
Q Consensus       633 ~~d~G~Y~C~a~n~~g~----~-~~~~~~~~l~v~~~p-~~~~~~-~p~~~~~~~~~~~~~G~~v~l~C~~~g~-P~p-~  703 (813)
                      .+|+|.|.|.+.|..|.    . ........|.|...+ ..+.+. .++      ...+.+|+.++|.|.+.|. |.| .
T Consensus        88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~------~~~~~~g~~v~L~C~~~g~~P~p~~  161 (225)
T 1op3_H           88 VEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAP------SSKSTSGGTAALGCLVKDYFPEPVT  161 (225)
T ss_dssp             GGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECC------CTTCCCCCEEEEEEEEEEEBSSCCE
T ss_pred             hhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecc------cccccCCCcEEEEEEEEeEECCCeE
Confidence            99999999999997651    0 011123567777521 111111 111      1235789999999999987 777 9


Q ss_pred             EEEEeCCcccCCCc---eee-----ecceEEEECCCCCCCCEEEEEEEEcCCCceE
Q psy14896        704 YNWTRRGSPLPRNA---YFE-----NFNRILTIPNVKVEDQGEYICRASNDRSALE  751 (813)
Q Consensus       704 i~W~k~g~~l~~~~---~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~  751 (813)
                      |+|+|+|..+....   ...     ...+.|.|.++..+| |.|+|.|.|..+...
T Consensus       162 v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~  216 (225)
T 1op3_H          162 VSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK  216 (225)
T ss_dssp             EECCTTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTEE
T ss_pred             EEEecCCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCcc
Confidence            99999997643111   001     113469999999889 999999999766543

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.68  E-value=5e-16  Score=155.29  Aligned_cols=192  Identities=13%  Similarity=0.096  Sum_probs=121.0

Q ss_pred             CceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecc--cccccccc---cccccCCCccEEee------CCeE
Q psy14896        190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKED--YVQDRLVA---NLIDPLSDKRFTLS------GGNL  258 (813)
Q Consensus       190 P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g--~~l~~~~~---~~~~~~~~~~~~~~------~~~l  258 (813)
                      +.++..|..+.+.+|     ++|+|.|.+.+.|.+.|.|||..  ..+.....   .........++...      +.+|
T Consensus         4 ~~v~q~p~~~~v~~G-----~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL   78 (256)
T 3tf7_C            4 QSVTQPDARVTVSEG-----ASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHL   78 (256)
T ss_dssp             CEEECSCSEEEEETT-----SCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEE
T ss_pred             cEEEecCceEEecCC-----CeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEE
Confidence            345666777888777     67999999998899999999953  21110000   00001123344431      3358


Q ss_pred             EEcCCccccCCeeEEEEeecCcee---eEeeeeEEeeee--------------------ecccccCCCCceeecCCCeEE
Q psy14896        259 IINDPRQVEDRGSYHCKASNKFGS---IISESVQLAFGF--------------------IGEFNLKRAPEIGNQNWGKAM  315 (813)
Q Consensus       259 ~i~~~~~~~d~G~Y~C~a~n~~g~---~~s~~~~l~v~~--------------------~~~~~~~~~~~~~~~~~~~~l  315 (813)
                      .|.+. +.+|+|.|+|.|.|..+.   .....+.|.|..                    ++.+...+....+.+|+.++|
T Consensus        79 ~I~~v-~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L  157 (256)
T 3tf7_C           79 RKASV-HRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTL  157 (256)
T ss_dssp             EESSC-CGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEE
T ss_pred             EECCC-CcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEE
Confidence            88885 899999999999987541   123446666654                    222333344556778999999


Q ss_pred             EecCCCCCCcceEEEeeccccccc---c------------CCccEEEcc----CccEEEeeeeecCCeeeEEEEeeeccc
Q psy14896        316 FCDPPTNYPGVNYYWARDYFPNFV---E------------EDKRVFVSY----DGALYFSALEQIDAGNYSCNVQSKVSD  376 (813)
Q Consensus       316 ~C~~~~~~p~~~v~W~k~~~~~~~---~------------~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~n~~g~  376 (813)
                      .|.+.. . .+.+.|+|.......   .            ...|+.+..    ..+|.|.+++.+|+|.|+|.|.|..|.
T Consensus       158 ~C~~~~-~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~  235 (256)
T 3tf7_C          158 SCRQTN-S-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPGQ  235 (256)
T ss_dssp             CEEECS-C-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETTE
T ss_pred             EEEcCC-C-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCCc
Confidence            999754 3 678999984321100   0            122333222    237999999999999999999998653


Q ss_pred             cCCCCCceeeEEcc
Q psy14896        377 TGRNGPFFPLKVFP  390 (813)
Q Consensus       377 ~~~~s~~~~l~v~~  390 (813)
                      . .......|.|..
T Consensus       236 ~-~fG~gt~l~v~~  248 (256)
T 3tf7_C          236 L-YFGEGSKLTVLE  248 (256)
T ss_dssp             E-EECCCEEEEEEC
T ss_pred             c-EECCCeEEEEEc
Confidence            2 223345666653

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.68  E-value=2.3e-16  Score=146.24  Aligned_cols=148  Identities=14%  Similarity=0.090  Sum_probs=100.0

Q ss_pred             cccEEEEeeeccCCCCeEEEeeccccccccccc--ccccCCCccEEe--eCCeEEEcCCccccCCeeEEEEeecCceeeE
Q psy14896        209 LNDITLSCYAGGYPNPSYEWFKEDYVQDRLVAN--LIDPLSDKRFTL--SGGNLIINDPRQVEDRGSYHCKASNKFGSII  284 (813)
Q Consensus       209 g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~--~~~~~~~~~~~~--~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~  284 (813)
                      |++|+|.|.+.+ |.+.|.|+|++..+......  ........|..+  .+++|.|.+. +.+|+|.|+|.|.|..|   
T Consensus        10 G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v-~~~DsG~Y~C~~~n~~~---   84 (171)
T 1ccz_A           10 YGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNL-TSSDEDEYEMESPNITD---   84 (171)
T ss_dssp             TCCEEECCCCSS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSC-CGGGCEEEEEECTTCCS---
T ss_pred             CCCEEEcCCCCC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCC-ChhhCceEEEEEeCCCC---
Confidence            478999999965 89999999998754321110  001112235554  4789999986 89999999999999888   


Q ss_pred             eeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCccEEEccCccEEEeeeeecCCe
Q psy14896        285 SESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAG  364 (813)
Q Consensus       285 s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G  364 (813)
                      +..+.|.|..++..     |.........+|.|.+ .+.|.|.++|+|||.++...        ....|.+.  ..+|+|
T Consensus        85 ~~~~~L~V~~~~~~-----p~i~~~~~~~~L~C~~-~~~p~p~i~W~~~~~~l~~~--------~~~~l~~~--~~~~~g  148 (171)
T 1ccz_A           85 TMKFFLYVLEMVSK-----PMIYWECSNATLTCEV-LEGTDVELKLYQGKEHLRSL--------RQKTMSYQ--WTNLRA  148 (171)
T ss_dssp             CEEEEEEEECCCCC-----CEEEEETTTTEEEEEC-SSCSSCEEEEEETTEEEEEE--------SSSEEEEE--CSCCSS
T ss_pred             cEEEEEEEECcCCC-----CEEEEecCCcEEEEEe-CCCCCcEEEEEECCEECcCC--------cceEEEEe--ccCCCc
Confidence            45677777654321     1111111224899996 55689999999999864311        12233333  477899


Q ss_pred             eeEEEEeeecccc
Q psy14896        365 NYSCNVQSKVSDT  377 (813)
Q Consensus       365 ~Y~C~a~n~~g~~  377 (813)
                      .|+|.|.|..+..
T Consensus       149 ~Y~C~a~N~~~~~  161 (171)
T 1ccz_A          149 PFKCKAVNRVSQE  161 (171)
T ss_dssp             CEEEEEEETTEEE
T ss_pred             eEEEEEEcccCcc
Confidence            9999999998753

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.68  E-value=4.2e-16  Score=151.38  Aligned_cols=172  Identities=15%  Similarity=0.172  Sum_probs=120.1

Q ss_pred             CCCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEee----CCeEEEcCC
Q psy14896        188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS----GGNLIINDP  263 (813)
Q Consensus       188 ~~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~----~~~l~i~~~  263 (813)
                      .+|.| ..|.++.+.+|     +.++|.|.+.|.|.|.|.|+|+|..+..        ....++.+.    .++|.|.+.
T Consensus        18 ~~P~~-~~p~~~~~~~G-----~~v~l~C~~~g~p~p~i~W~~~g~~l~~--------~~~~~~~~~~~~~~~~L~i~~~   83 (215)
T 3mtr_A           18 YAPKL-QGPVAVYTWEG-----NQVNITCEVFAYPSATISWFRDGQLLPS--------SNYSNIKIYNTPSASYLEVTPD   83 (215)
T ss_dssp             EEEEE-ECCSEEEECTT-----CCEEEEEEEEEESCCEEEEEETTEESSC--------SSSCSEEEEEETTEEEEEECCC
T ss_pred             cCCcc-cCCceEEEECC-----CCEEEEEEEeecCCCEEEEEECCeECCC--------CCCccEEEecCCCeeEEEEecC
Confidence            46778 57778877777     6799999999999999999999987632        222334433    356778775


Q ss_pred             ccccCCeeEEEEeecCceeeEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCC---CCCCcc--eEEEeecccccc
Q psy14896        264 RQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPP---TNYPGV--NYYWARDYFPNF  338 (813)
Q Consensus       264 ~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~---~~~p~~--~v~W~k~~~~~~  338 (813)
                       +.+|+|.|+|.|.|..|.. +..+.|.|..+|......  .....+..+.|.|...   .+.|..  .+.|.+++...-
T Consensus        84 -~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~P~~p~~~--~~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w  159 (215)
T 3mtr_A           84 -SENDFGNYNCTAVNRIGQE-SLEFILVQADTPSSPSID--QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVW  159 (215)
T ss_dssp             -SGGGCEEEEEEEECSSCEE-EEEEEEEECCCCCCCEEE--EEEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCC
T ss_pred             -ChhhCeEEEEEEEECCCce-EEEEEEEECCCCCCCcce--EEEEecceEEEEEecCCccCCCceEEEEEEEEECCCCcc
Confidence             8999999999999999987 667888876655443221  1223455678888642   344544  578988876421


Q ss_pred             ccCCccEEEcc---CccEEEeeeeecCCeeeEEEEeeeccccCC
Q psy14896        339 VEEDKRVFVSY---DGALYFSALEQIDAGNYSCNVQSKVSDTGR  379 (813)
Q Consensus       339 ~~~~~~~~~~~---~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~  379 (813)
                      .  ........   +..|.|.++...|.|.|+|.|.|..|....
T Consensus       160 ~--~~~~~~~~~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~  201 (215)
T 3mtr_A          160 H--SKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEI  201 (215)
T ss_dssp             E--EEEEEHHHHHHHTEEEEECCCTTCEEEEEEEEEESSCBCCC
T ss_pred             c--ccccccccccccccEEECCCCCCCEEEEEEEEEeCCcccCc
Confidence            1  01111111   257999999999999999999999985433

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.68  E-value=1.7e-16  Score=155.27  Aligned_cols=175  Identities=14%  Similarity=0.181  Sum_probs=107.5

Q ss_pred             CCCceeecCCCccccccEEEEeeeccCC--CCeEEEeecc--ccccccc-------ccccccCCCccEEee------CCe
Q psy14896        195 QPTDVVFDLSKRSILNDITLSCYAGGYP--NPSYEWFKED--YVQDRLV-------ANLIDPLSDKRFTLS------GGN  257 (813)
Q Consensus       195 ~p~~~~v~~g~~~~g~~v~l~C~~~g~P--~p~v~W~k~g--~~l~~~~-------~~~~~~~~~~~~~~~------~~~  257 (813)
                      +|....+.+|     ++|+|.|.+.+.|  .+.|.|||++  ..+....       ..........|+.+.      +.+
T Consensus         6 qp~~~~v~~G-----~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s   80 (227)
T 1mju_H            6 QPGAELVKPG-----ASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAY   80 (227)
T ss_dssp             CCSEEEECTT-----CCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEE
T ss_pred             CCCCeEEcCC-----CCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEE
Confidence            3555666666     7799999999877  6899999975  2221000       000011113455542      246


Q ss_pred             EEEcCCccccCCeeEEEEeecCceeeEeeeeEEeeee----ecccccCCCCceeecCCCeEEEecCCCCCCcc-eEEEee
Q psy14896        258 LIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGF----IGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGV-NYYWAR  332 (813)
Q Consensus       258 l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~----~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~-~v~W~k  332 (813)
                      |.|.+. +.+|+|.|.|.|.|..+......+.|.|..    .|.+.+......+..|+.++|.|.+.+..|.+ .++|++
T Consensus        81 L~I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~  159 (227)
T 1mju_H           81 MQLSSL-TSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNS  159 (227)
T ss_dssp             EEECSC-CGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGG
T ss_pred             EEECCC-CcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEec
Confidence            888885 899999999999986543333456677754    12222222223456788999999975445776 999999


Q ss_pred             ccccccccCCccEEE----ccCccEEEeeeeecCCeeeEEEEeeeccc
Q psy14896        333 DYFPNFVEEDKRVFV----SYDGALYFSALEQIDAGNYSCNVQSKVSD  376 (813)
Q Consensus       333 ~~~~~~~~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~  376 (813)
                      ++..+.......+..    ...+.|.|..+..+| |.|+|.|.|..+.
T Consensus       160 ~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~  206 (227)
T 1mju_H          160 GSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASS  206 (227)
T ss_dssp             GTBCTTEEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGT
T ss_pred             CCCcCCcEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCC
Confidence            998643221111111    112468898888888 9999999997653

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.68  E-value=2.6e-16  Score=157.62  Aligned_cols=185  Identities=18%  Similarity=0.229  Sum_probs=115.2

Q ss_pred             CCceeccCCCceEEeCCCCC--CCccEEEEccCCC--CC-cc-------------cCCCeEEEeeCc-----cEEEEeec
Q psy14896        576 APEIGNQNWGKAMFCDPPTN--YPGVNYYWARDYF--PN-FV-------------EEDKRVFVSYDG-----ALYFSALE  632 (813)
Q Consensus       576 ~~~~~~~g~~~~l~C~~~~~--~p~~~v~W~k~~~--~~-~~-------------~~~~~~~~~~~~-----~L~i~~~~  632 (813)
                      .+..+.+|+.++|.|.+ .+  .+.+.+.|+|...  .. .+             ....|+.+..++     +|+|.+++
T Consensus        16 ~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   94 (257)
T 3gkz_A           16 GPSLVKPSQTLSLTCSV-TGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKSVS   94 (257)
T ss_dssp             CCSEECTTCCEEEEEEE-EESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCeEEcCCCcEEEEEEE-EcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECCCC
Confidence            34567889999999998 45  3578999999431  10 00             123456555433     59999999


Q ss_pred             ccCCeeEEEEEEeeecCc-cccCceeeEEEccCCCcc-----c-cccCCCCCCCCCcCCCCCCeEEEEEEecCCCCC-eE
Q psy14896        633 QIDAGNYSCNVQSKVSDT-GRNGPFFPLKVFPHSNFQ-----Q-LKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVP-SY  704 (813)
Q Consensus       633 ~~d~G~Y~C~a~n~~g~~-~~~~~~~~l~v~~~p~~~-----~-~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p-~i  704 (813)
                      .+|+|.|.|.|.|..+.. ........|.|..++...     . ...+.....+....+.+|++++|.|.+.+.|.+ .+
T Consensus        95 ~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v  174 (257)
T 3gkz_A           95 SEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVSSSHL  174 (257)
T ss_dssp             GGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCCGGGE
T ss_pred             hhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCccceEE
Confidence            999999999999863211 111223567777651100     0 000011112223568899999999999999888 99


Q ss_pred             EEEeC--CcccCC------------Cceee----ecceEEEECCCCCCCCEEEEEEEEcCCCce-EEEEEEEEEcC
Q psy14896        705 NWTRR--GSPLPR------------NAYFE----NFNRILTIPNVKVEDQGEYICRASNDRSAL-ESSVTISIQAE  761 (813)
Q Consensus       705 ~W~k~--g~~l~~------------~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~~~  761 (813)
                      .|+|+  +..+..            ..++.    ....+|+|.+++.+|+|.|.|.|.|..... ..-..|.|...
T Consensus       175 ~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~l~v~~~  250 (257)
T 3gkz_A          175 YWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTKLEIKRA  250 (257)
T ss_dssp             EEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCC
T ss_pred             EEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCCceEEcCCEEEEEEeC
Confidence            99994  333210            01111    123469999999999999999999854322 12345666543

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.68  E-value=9e-17  Score=161.15  Aligned_cols=174  Identities=14%  Similarity=0.118  Sum_probs=103.2

Q ss_pred             cccCCCceeccCCCceEEeCCCCCCCccEEEEccCC---CCCcc-cC--------------CCeEEE----eeCccEEEE
Q psy14896        572 NLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDY---FPNFV-EE--------------DKRVFV----SYDGALYFS  629 (813)
Q Consensus       572 ~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~---~~~~~-~~--------------~~~~~~----~~~~~L~i~  629 (813)
                      ...+....+.+|+.++|.|.+ .+.|.+.+.|+|..   .+..+ ..              +.+...    ..+.+|.|.
T Consensus         6 ~~~p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   84 (259)
T 3omz_A            6 EGRTKSVIRQTGSSAEITCDL-AEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMILR   84 (259)
T ss_dssp             -----CEEEETTCCEEEECCC------CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEEES
T ss_pred             ccCCceeEecCCCcEEEEEEE-ccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEEEC
Confidence            334456678899999999999 67788999999932   11000 00              011111    122359999


Q ss_pred             eecccCCeeEEEEEEeeecCccccCceeeEEEccCCCcccc---------ccCCCCCCCCCcCCCCCCeEEEEEEecCC-
Q psy14896        630 ALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQL---------KFPNNFPKTFPEAPKAGDKVRLECVAFGY-  699 (813)
Q Consensus       630 ~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~---------~~p~~~~~~~~~~~~~G~~v~l~C~~~g~-  699 (813)
                      +++.+|+|.|.|.|.|..+..........|.|..++.....         ..|.....+....+.+|++++|.|.+.+. 
T Consensus        85 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~  164 (259)
T 3omz_A           85 NLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSW  164 (259)
T ss_dssp             SCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEECCC
T ss_pred             CCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECCCcc
Confidence            99999999999999987653212223356777654211100         00001112223568899999999999875 


Q ss_pred             CCCeEEEEeCCc--ccC------------CCceee------ecceEEEECCCCCCCCEEEEEEEEcC
Q psy14896        700 PVPSYNWTRRGS--PLP------------RNAYFE------NFNRILTIPNVKVEDQGEYICRASND  746 (813)
Q Consensus       700 P~p~i~W~k~g~--~l~------------~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~a~N~  746 (813)
                      |.+.+.|+|++.  .+.            ...++.      .....|+|.+++.+|+|.|.|.|.+.
T Consensus       165 ~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~  231 (259)
T 3omz_A          165 WSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGES  231 (259)
T ss_dssp             SSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEESC
T ss_pred             CCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeCc
Confidence            788999999542  110            001111      12356999999999999999999864

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.67  E-value=3.3e-17  Score=157.95  Aligned_cols=160  Identities=13%  Similarity=0.179  Sum_probs=96.7

Q ss_pred             cccEEEEeeeccCC----CCeEEEeecccccccccccccccCCCccEEeeCCeEEEcC-----CccccCCeeEEEEeecC
Q psy14896        209 LNDITLSCYAGGYP----NPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIIND-----PRQVEDRGSYHCKASNK  279 (813)
Q Consensus       209 g~~v~l~C~~~g~P----~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~-----~~~~~d~G~Y~C~a~n~  279 (813)
                      |++++|.|.+.|.|    .+.|+|||+|.++.....       .......+|.+.+..     ....+|+|.|+|.|.|.
T Consensus        18 G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~-------~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~   90 (207)
T 1l6x_A           18 SRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKT-------KPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNK   90 (207)
T ss_dssp             TSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEE-------CCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECT
T ss_pred             CCceEEEEEEecccCCCCCeEEEEEECCccccCccc-------CCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcC
Confidence            37799999998865    349999999987632210       111122344443321     12344599999999998


Q ss_pred             ceee-EeeeeEE--eeeeecccccCCCCceeecCCCeEEEecCCCCCCc-ceEEEeeccccccccCCccEEEccCccEEE
Q psy14896        280 FGSI-ISESVQL--AFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPG-VNYYWARDYFPNFVEEDKRVFVSYDGALYF  355 (813)
Q Consensus       280 ~g~~-~s~~~~l--~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~-~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i  355 (813)
                      .+.. .+..+.+  .+..+|.+.+.........+..++|.|.+.+..|. ++|+|+|||.++......+.....+|++.+
T Consensus        91 ~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~  170 (207)
T 1l6x_A           91 ALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFL  170 (207)
T ss_dssp             TSSSCEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEE
T ss_pred             cCCcceEEEeccCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccCceECCCCCEEE
Confidence            7753 1223322  33344444443333322345568999997544565 599999999875322222333455665444


Q ss_pred             e------eeeecCCeeeEEEEeeecc
Q psy14896        356 S------ALEQIDAGNYSCNVQSKVS  375 (813)
Q Consensus       356 ~------~v~~~D~G~Y~C~a~n~~g  375 (813)
                      .      ....+|.|.|+|.|.|...
T Consensus       171 ~s~l~i~~~~~~~~g~YtC~a~n~~l  196 (207)
T 1l6x_A          171 YSKLTVDKSRWQQGNVFSCSVMHEAL  196 (207)
T ss_dssp             EEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             EEEEEECHHHcCCCCEEEEEEEcCCc
Confidence            3      3334579999999998764

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.67  E-value=8e-18  Score=163.64  Aligned_cols=158  Identities=14%  Similarity=0.200  Sum_probs=103.0

Q ss_pred             eccCCCceEEeCCCCCC---Cc-cEEEEccCCCCCcccC--------CCeEEEeeCccEEEEeecccCCeeEEEEEEeee
Q psy14896        580 GNQNWGKAMFCDPPTNY---PG-VNYYWARDYFPNFVEE--------DKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV  647 (813)
Q Consensus       580 ~~~g~~~~l~C~~~~~~---p~-~~v~W~k~~~~~~~~~--------~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~  647 (813)
                      +.+|+.++|.|.+. +.   |. +.|+|+|++.++....        +.++  ...++|.|.+++.+|+|.|+|.|.|..
T Consensus        23 v~~G~~v~L~C~~~-g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~--~~~~~L~I~~~~~~D~g~Y~C~~~~~~   99 (218)
T 2rgs_A           23 LMISLTPKVTCVVV-DVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTI--RVVSTLPIQHQDWMSGKEFKCKVNNKD   99 (218)
T ss_dssp             HCTTSCCEEEEEEE-EECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEE--EEEEEEECCHHHHHTTCCEEEEEEETT
T ss_pred             hccCCCeeEEEEEc-CCccCCCceEEEEEECCccccCcccccccccCCCeE--EEEEEEEEcHHHcCCCCeEEEEEECCc
Confidence            67899999999994 55   43 8999999986532110        0111  123469999999999999999999987


Q ss_pred             cCccccCceee--EEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecC-CCCC-eEEEEeCCcccCCCcee---e
Q psy14896        648 SDTGRNGPFFP--LKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFG-YPVP-SYNWTRRGSPLPRNAYF---E  720 (813)
Q Consensus       648 g~~~~~~~~~~--l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g-~P~p-~i~W~k~g~~l~~~~~~---~  720 (813)
                      +..... ..+.  +.+..+|.+...  +.     . ....+|+.++|.|.+.| .|+| .|+|+|||..+......   .
T Consensus       100 ~~~~~~-~~v~~~~~~~~~P~v~~~--~~-----~-~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~  170 (218)
T 2rgs_A          100 LPSPIE-RTISKIKGLVRAPQVYIL--PP-----P-AEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYKDTAPVL  170 (218)
T ss_dssp             CSSCEE-EEECCCCCCCBCCEEEEE--CC-----C-GGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEE
T ss_pred             CCCcce-EEEeecCCCCCCCEEEEE--CC-----C-hHHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCceecccEE
Confidence            643111 1111  133344433221  11     1 12235999999999998 5765 99999999987543211   1


Q ss_pred             ecc------eEEEECCCCCCCCEEEEEEEEcCCCc
Q psy14896        721 NFN------RILTIPNVKVEDQGEYICRASNDRSA  749 (813)
Q Consensus       721 ~~~------~~L~i~~v~~~d~G~Y~C~a~N~~G~  749 (813)
                      ..+      +.|.|.....+|.|.|+|.|.|....
T Consensus       171 ~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~  205 (218)
T 2rgs_A          171 DSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLK  205 (218)
T ss_dssp             CTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTSG
T ss_pred             CCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCC
Confidence            122      24566655566799999999998653

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.67  E-value=3.6e-16  Score=154.75  Aligned_cols=180  Identities=16%  Similarity=0.184  Sum_probs=116.0

Q ss_pred             CCCceeccCCCceEEeCCCCCC--CccEEEEccCC--CCC--cc------------c-CCCeEEEee-----CccEEEEe
Q psy14896        575 RAPEIGNQNWGKAMFCDPPTNY--PGVNYYWARDY--FPN--FV------------E-EDKRVFVSY-----DGALYFSA  630 (813)
Q Consensus       575 ~~~~~~~~g~~~~l~C~~~~~~--p~~~v~W~k~~--~~~--~~------------~-~~~~~~~~~-----~~~L~i~~  630 (813)
                      +....+.+|+.++|.|.+ .+.  +.+.|.|+|+.  ...  .+            . ...|+.+..     +.+|+|.+
T Consensus         8 p~~v~~~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   86 (242)
T 1hxm_B            8 QISSTKTLSKTARLECVV-SGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHN   86 (242)
T ss_dssp             CSEEEEETTCCEEEEEEE-ESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECS
T ss_pred             CceEEecCCCcEEEEEEe-CCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEEECC
Confidence            344567889999999998 443  66889999953  211  00            0 345666653     23699999


Q ss_pred             ecccCCeeEEEEEEeeec-C---ccccCceeeEEEccCCCcccc-ccCCCCCCCCCcCCCCCCeEEEEEEecCC-CC-Ce
Q psy14896        631 LEQIDAGNYSCNVQSKVS-D---TGRNGPFFPLKVFPHSNFQQL-KFPNNFPKTFPEAPKAGDKVRLECVAFGY-PV-PS  703 (813)
Q Consensus       631 ~~~~d~G~Y~C~a~n~~g-~---~~~~~~~~~l~v~~~p~~~~~-~~p~~~~~~~~~~~~~G~~v~l~C~~~g~-P~-p~  703 (813)
                      ++.+|+|.|.|.+.|..+ .   .........|.|...+..... ..+..+. .....+.+|+.++|.|.+.|. |. +.
T Consensus        87 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~-p~~~~~~~g~~v~L~C~~~g~~P~~~~  165 (242)
T 1hxm_B           87 VEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFL-PSIAETKLQKAGTYLCLLEKFFPDVIK  165 (242)
T ss_dssp             CCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCC-CCGGGGGSSSCEEEEEEEEEESSCCEE
T ss_pred             CCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEEC-CChhhcccCCCceEEEEEeeEECCCeE
Confidence            999999999999998641 1   001112356777754321000 0011111 122346689999999999986 64 79


Q ss_pred             EEEEeCCc-ccCCCc---eeee-----cceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896        704 YNWTRRGS-PLPRNA---YFEN-----FNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI  758 (813)
Q Consensus       704 i~W~k~g~-~l~~~~---~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  758 (813)
                      |+|+|+|. .+....   ....     ..+.|.|..+.. | |.|+|.|.|..+.......|.+
T Consensus       166 v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~~~  227 (242)
T 1hxm_B          166 IHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEIIF  227 (242)
T ss_dssp             EEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEEEE
T ss_pred             EEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEeec
Confidence            99999997 664331   1111     125799988775 5 9999999999987655555544

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.67  E-value=1.2e-16  Score=156.62  Aligned_cols=170  Identities=15%  Similarity=0.225  Sum_probs=113.1

Q ss_pred             CCceeccCCCceEEeCCCCCCCc----cEEEEccCC--CCCc--c------------cCCCeEEEee-----CccEEEEe
Q psy14896        576 APEIGNQNWGKAMFCDPPTNYPG----VNYYWARDY--FPNF--V------------EEDKRVFVSY-----DGALYFSA  630 (813)
Q Consensus       576 ~~~~~~~g~~~~l~C~~~~~~p~----~~v~W~k~~--~~~~--~------------~~~~~~~~~~-----~~~L~i~~  630 (813)
                      .+..+.+|+.++|.|.+ .+.|.    +.|.|+|++  ....  +            ....|+.+..     +.+|.|.+
T Consensus         8 ~~~~v~~G~~v~L~C~~-~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   86 (228)
T 3bae_H            8 GPGLLKPSQTLSLTCSF-SGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITS   86 (228)
T ss_dssp             CCSEECTTCCEEEEEEE-ESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECS
T ss_pred             CceeecCCCeEEEEEEE-eCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcC
Confidence            34567889999999999 66664    889999853  2210  0            0134666653     24699999


Q ss_pred             ecccCCeeEEEEEEeeec------CccccCceeeEEEccC----CCccccccCCCCCCCCCcCCCCCCeEEEEEEecCC-
Q psy14896        631 LEQIDAGNYSCNVQSKVS------DTGRNGPFFPLKVFPH----SNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGY-  699 (813)
Q Consensus       631 ~~~~d~G~Y~C~a~n~~g------~~~~~~~~~~l~v~~~----p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~-  699 (813)
                      ++.+|+|.|.|.+.|..|      ..........|.|...    |.+..  .++      ...+.+|+.++|.|.+.|. 
T Consensus        87 v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~--~~~------~~~~~~g~~~~l~C~~~g~~  158 (228)
T 3bae_H           87 VDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYP--LAP------VCGDTTGSSVTLGCLVKGYF  158 (228)
T ss_dssp             CCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEE--ECC-----------CCSEEEEEEEEEEEB
T ss_pred             CCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEE--ecc------cccccCCCCEEEEEEEccEe
Confidence            999999999999999764      1001112256777642    22211  110      1235789999999999986 


Q ss_pred             CCC-eEEEEeCCcccCCCc--eee-----ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEE
Q psy14896        700 PVP-SYNWTRRGSPLPRNA--YFE-----NFNRILTIPNVKVEDQGEYICRASNDRSALESSVT  755 (813)
Q Consensus       700 P~p-~i~W~k~g~~l~~~~--~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~  755 (813)
                      |.| .|+|+|+|..+....  ...     ...+.|+|..+..+| |.|+|.|.|..|.......
T Consensus       159 P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~~~  221 (228)
T 3bae_H          159 PEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVDKK  221 (228)
T ss_dssp             SSCCEEEEGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred             CCCEEEEEeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEEEE
Confidence            877 999999988653111  010     123569999998866 9999999999887655444

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.67  E-value=1.5e-16  Score=156.94  Aligned_cols=179  Identities=18%  Similarity=0.222  Sum_probs=112.7

Q ss_pred             ceeeCCCceeecCCCccccccEEEEeeeccCC-CC-eEEEeecc--cccccccc--cccccCCCccEEee----CCeEEE
Q psy14896        191 YFIKQPTDVVFDLSKRSILNDITLSCYAGGYP-NP-SYEWFKED--YVQDRLVA--NLIDPLSDKRFTLS----GGNLII  260 (813)
Q Consensus       191 ~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P-~p-~v~W~k~g--~~l~~~~~--~~~~~~~~~~~~~~----~~~l~i  260 (813)
                      .++. |..+.+.+|     ++++|.|.+.+.| .+ .|.|||++  ..+.....  .........++...    +.+|.|
T Consensus        22 ~v~~-p~~~~v~~G-----~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I   95 (234)
T 2j6e_L           22 VLTQ-PPSASGTPG-----QRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAI   95 (234)
T ss_dssp             CCBC-CSCCCBCTT-----CEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEE
T ss_pred             EEeC-CCcEEeeCC-----CcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEE
Confidence            3444 666666666     7799999998754 34 79999974  22210000  00011122344433    236888


Q ss_pred             cCCccccCCeeEEEEeecCce--eeEeeeeEEeeee----ecccccCCCCceeecCCCeEEEecCCCCCCc-ceEEEeec
Q psy14896        261 NDPRQVEDRGSYHCKASNKFG--SIISESVQLAFGF----IGEFNLKRAPEIGNQNWGKAMFCDPPTNYPG-VNYYWARD  333 (813)
Q Consensus       261 ~~~~~~~d~G~Y~C~a~n~~g--~~~s~~~~l~v~~----~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~-~~v~W~k~  333 (813)
                      .+. +.+|+|.|+|.|.|..+  ...+..+.|.|..    +|.+.+.........|+.++|.|.+.+..|+ +.++|+||
T Consensus        96 ~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~  174 (234)
T 2j6e_L           96 SGL-RSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKAD  174 (234)
T ss_dssp             ESC-CSTTCSEEEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEET
T ss_pred             CCC-CHHHCEEEEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEEC
Confidence            885 89999999999999877  2334456666632    3333333333334457788999997655565 59999999


Q ss_pred             cccccccCC-ccEEEccC------ccEEEeeeeecCCeeeEEEEeeeccc
Q psy14896        334 YFPNFVEED-KRVFVSYD------GALYFSALEQIDAGNYSCNVQSKVSD  376 (813)
Q Consensus       334 ~~~~~~~~~-~~~~~~~~------~~L~i~~v~~~D~G~Y~C~a~n~~g~  376 (813)
                      |+++..... .......+      +.|.|..+..+|+|.|+|.|.|..+.
T Consensus       175 g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  224 (234)
T 2j6e_L          175 GAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGST  224 (234)
T ss_dssp             TEECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBC
T ss_pred             CEECCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCc
Confidence            987532110 00111122      35889999999999999999997653

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.67  E-value=9.2e-16  Score=155.69  Aligned_cols=190  Identities=17%  Similarity=0.191  Sum_probs=120.9

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccCC--CCeEEEeeccc--ccccccc-------cccccCCCccEEee------
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYP--NPSYEWFKEDY--VQDRLVA-------NLIDPLSDKRFTLS------  254 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P--~p~v~W~k~g~--~l~~~~~-------~~~~~~~~~~~~~~------  254 (813)
                      +...|....+.+|     ++|+|.|.+.|.|  .+.|.|||++.  .+.....       .........|+...      
T Consensus        29 ~~~~p~~~~v~~G-----~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~  103 (282)
T 1qok_A           29 KLQQSGAELVRSG-----TSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSN  103 (282)
T ss_dssp             EEEECCCEEEETT-----CCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTT
T ss_pred             EEECCCCEEEeCC-----CeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCC
Confidence            3445667777776     7799999998875  68999999752  1110000       00011123455543      


Q ss_pred             CCeEEEcCCccccCCeeEEEEeecCcee----eEeeeeEEeeeeec-------------cccc--CCCCceeecCCCeEE
Q psy14896        255 GGNLIINDPRQVEDRGSYHCKASNKFGS----IISESVQLAFGFIG-------------EFNL--KRAPEIGNQNWGKAM  315 (813)
Q Consensus       255 ~~~l~i~~~~~~~d~G~Y~C~a~n~~g~----~~s~~~~l~v~~~~-------------~~~~--~~~~~~~~~~~~~~l  315 (813)
                      ..+|.|.+. +.+|+|.|+|.|.|..|.    ..+..+.|.|...+             ++.+  .+....+.+|+.++|
T Consensus       104 ~~sL~I~~v-~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L  182 (282)
T 1qok_A          104 TAYLQLSSL-TSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTI  182 (282)
T ss_dssp             EEEEEECSC-CGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEE
T ss_pred             eEEEEECcC-ChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEE
Confidence            146888885 899999999999998761    22345667776543             1111  233456788999999


Q ss_pred             EecCCCCCCcceEEEee--ccccccc----------cCCccEEEcc---CccEEEeeeeecCCeeeEEEEeeeccccCCC
Q psy14896        316 FCDPPTNYPGVNYYWAR--DYFPNFV----------EEDKRVFVSY---DGALYFSALEQIDAGNYSCNVQSKVSDTGRN  380 (813)
Q Consensus       316 ~C~~~~~~p~~~v~W~k--~~~~~~~----------~~~~~~~~~~---~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~  380 (813)
                      .|.+ .+.| +.+.|+|  +|..+..          ....|+....   ..+|.|.++..+|+|.|+|.|.|...  ...
T Consensus       183 ~C~~-~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~--~~f  258 (282)
T 1qok_A          183 TCSA-SSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYP--LTF  258 (282)
T ss_dssp             EEEE-SSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSS--CEE
T ss_pred             EEEe-cCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCCC--ceE
Confidence            9996 5667 8999999  5654311          1134554432   33799999999999999999987432  222


Q ss_pred             CCceeeEEccC
Q psy14896        381 GPFFPLKVFPH  391 (813)
Q Consensus       381 s~~~~l~v~~~  391 (813)
                      +....|.|...
T Consensus       259 g~gt~l~V~~~  269 (282)
T 1qok_A          259 GAGTKLELKRA  269 (282)
T ss_dssp             CCCEEEEEC--
T ss_pred             eCCEEEEEecc
Confidence            34467777543

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.67  E-value=2.2e-14  Score=166.59  Aligned_cols=346  Identities=13%  Similarity=0.037  Sum_probs=191.2

Q ss_pred             CCeEEEecCCCCCCcceEEEeeccccccccCCccEEEccCccEEEeeeeec-CCeeeEEEEeeeccccCCCCCceeeEEc
Q psy14896        311 WGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQI-DAGNYSCNVQSKVSDTGRNGPFFPLKVF  389 (813)
Q Consensus       311 ~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~v~~~-D~G~Y~C~a~n~~g~~~~~s~~~~l~v~  389 (813)
                      ..+.|.|.+ .|.|.+++.|.|+|..+..-...        .|.|..+... .++.|.|.+.|..|.....  .+.+.+.
T Consensus        92 g~l~v~c~~-~g~P~p~i~W~k~g~~~~~~~~~--------~~~i~~~~~~~~~l~~~~va~~~~G~~~~~--~v~~~~~  160 (731)
T 2v5y_A           92 GLLNVYVKV-NNGPLGNPIWNISGDPTRTWNRA--------ELAISTFWPNFYQVIFEVITSGHQGYLAID--EVKVLGH  160 (731)
T ss_dssp             EEEEEEEEE-TTCCCCSEEEEECCCCCSSCEEE--------EEEECCCTTSCEEEEEEEEECSSCCEEEEC--CBEEESS
T ss_pred             ceEEEEEec-CCCCccceeEEEeCCcCCceeEE--------EEEEeecCCCceEEEEEEEecCCceEEEEe--eEEeeec
Confidence            355888985 78899999999999874221222        2333332111 2245555554444432111  1122211


Q ss_pred             cCCcccccccCCCCCCCCCcCCCCCCcEEEEEEEeecCCCeee-Ee--ecCCcCCCCceeccccceEEEcccccccceEE
Q psy14896        390 PHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYN-WT--RRGSPLPRNAYFENFNRILTIPNVKMRGPYFI  466 (813)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~-W~--~~~~~l~~~~~~~~~~~~l~i~~~~~~g~y~~  466 (813)
                      ..     ..+|.+ .......+.+|+.+.|.|.+.|.|.|.+. |+  +++..+.....                     
T Consensus       161 ~~-----~~~p~~-~~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~---------------------  213 (731)
T 2v5y_A          161 PC-----TRTPHF-LRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEI---------------------  213 (731)
T ss_dssp             CC-----SSSCEE-CCCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEE---------------------
T ss_pred             cc-----cccccc-ccccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccce---------------------
Confidence            00     011111 12234568888888899988888888877 76  45544421100                     


Q ss_pred             eCCCceEecccccccccCeEEEEEeeccCCCcEEEeeccccccceeccccCCCCCceEEeeCCeEEEeCCCCCCCCceEE
Q psy14896        467 KQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYH  546 (813)
Q Consensus       467 ~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~  546 (813)
                                                                        ......+   ..++|.|.++ ...|+|.|+
T Consensus       214 --------------------------------------------------~~~~~~~---~~~~l~I~~~-~~~d~g~Y~  239 (731)
T 2v5y_A          214 --------------------------------------------------KVTSSRR---FIASFNVVNT-TKRDAGKYR  239 (731)
T ss_dssp             --------------------------------------------------EECCSSE---EEEEEEECSC-CTTTCEEEE
T ss_pred             --------------------------------------------------EEecccc---ceEEEEEccc-ccccCeEEE
Confidence                                                              0000011   1268999997 999999999


Q ss_pred             EEEEcCceeEEeecEEEEEeecccccccCCCceeccCCCceEEeCCCC--C-CCc--cEEEEccCCCCCcccCCCeEEEe
Q psy14896        547 CKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPT--N-YPG--VNYYWARDYFPNFVEEDKRVFVS  621 (813)
Q Consensus       547 C~a~n~~g~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~--~-~p~--~~v~W~k~~~~~~~~~~~~~~~~  621 (813)
                      |.|.|..|...+..+.|.|..+|.+...+... ......+.|.|..+.  + .|.  -.|.|.+.+..     .......
T Consensus       240 c~A~n~~G~~~s~~~~l~V~~~P~~~~~p~~~-~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~~~-----~~~~~~~  313 (731)
T 2v5y_A          240 CMIRTEGGVGISNYAELVVKEPPVPIAPPQLA-SVGATYLWIQLNANSINGDGPIVAREVEYCTASGS-----WNDRQPV  313 (731)
T ss_dssp             EEEEETTEEEECCCEEEEEECCCCBSSCCEEE-EECSSCEEEECCCSSBSSCSCCCEEEEEEEESSSS-----CEEEEEC
T ss_pred             EEEECCCCCcceeeEEEEEecCCCCCCCccee-ccCCceEEEEeCCcccCCCCccEEEEEEEEECCCC-----ceEEecc
Confidence            99999999865777888888777643322221 233456789998732  2 121  25667654321     1122333


Q ss_pred             eCccEEEEeecccCCeeEEEEEE--eeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCC
Q psy14896        622 YDGALYFSALEQIDAGNYSCNVQ--SKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGY  699 (813)
Q Consensus       622 ~~~~L~i~~~~~~d~G~Y~C~a~--n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~  699 (813)
                      ...++.|.++.+.+.+.|+|.|.  |..|....+..   +.+...+..     |...+............+.|.......
T Consensus       314 ~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~---~~~~t~~~~-----p~~~P~~~~~~~~~~~sv~l~W~~p~~  385 (731)
T 2v5y_A          314 DSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPA---LRTRTKCAD-----PMRGPRKLEVVEVKSRQITIRWEPFGY  385 (731)
T ss_dssp             CSSEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCC---EEEECCCCC-----CSCCCEEEEEEEECSSCEEEEEECCCH
T ss_pred             CcceEEEeCCCCCCEEEEEEEEEecCCCccccCCCc---EEeeecCCC-----CCCCCceeEEEeccCCeEEEEEECCCc
Confidence            44669999999999999999999  99987543321   233222110     100000000111233455666554211


Q ss_pred             C-------CCeEEEEeCCcccCC-----CceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCCc
Q psy14896        700 P-------VPSYNWTRRGSPLPR-----NAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPN  763 (813)
Q Consensus       700 P-------~p~i~W~k~g~~l~~-----~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~  763 (813)
                      +       .-.|.|...+.....     ..........++|.++.......|++.|.|..|... +..+.+.-++.
T Consensus       386 ~~~~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~-S~~~~~~T~~~  460 (731)
T 2v5y_A          386 NVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKE-SQELIVQTDED  460 (731)
T ss_dssp             HHHCSSSCEEEEEEEEESSSSEEEEEEEECCSSCSSCEEEECSCCSSCEEEEEEEEECSSCEEE-CCCEEEECCCC
T ss_pred             ccccceeeeEEEEEEEccCCCCccceeEEEEecCCcceEEECCCCCCCEEEEEEEEEcCCCCCC-CceEEEEccCC
Confidence            1       013444433210000     001112345789999999999999999999999753 55566654433

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.66  E-value=2.1e-16  Score=154.35  Aligned_cols=174  Identities=16%  Similarity=0.195  Sum_probs=109.8

Q ss_pred             CCceeecCCCccccccEEEEeeeccCC--CCeEEEeecc--ccccccc---------ccccccCCCccEEee------CC
Q psy14896        196 PTDVVFDLSKRSILNDITLSCYAGGYP--NPSYEWFKED--YVQDRLV---------ANLIDPLSDKRFTLS------GG  256 (813)
Q Consensus       196 p~~~~v~~g~~~~g~~v~l~C~~~g~P--~p~v~W~k~g--~~l~~~~---------~~~~~~~~~~~~~~~------~~  256 (813)
                      |..+.+.+|     ++++|.|.+.+.|  .+.|.|||++  ..+....         ..........|+.+.      +.
T Consensus         7 p~~~~v~~G-----~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   81 (222)
T 1q9r_B            7 SGGGLVQSG-----GSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSIL   81 (222)
T ss_dssp             ECCCEECTT-----CCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEE
T ss_pred             CCceeEcCC-----CEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeE
Confidence            344556555     7799999998866  7899999964  2111000         000111123455543      23


Q ss_pred             eEEEcCCccccCCeeEEEEeecCcee----eEeeeeEEeeee----ecccccCCCCceeecCCCeEEEecCCCCCCcc-e
Q psy14896        257 NLIINDPRQVEDRGSYHCKASNKFGS----IISESVQLAFGF----IGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGV-N  327 (813)
Q Consensus       257 ~l~i~~~~~~~d~G~Y~C~a~n~~g~----~~s~~~~l~v~~----~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~-~  327 (813)
                      +|.|.+. +.+|+|.|.|.|.|..|.    .....+.|.|..    .|.+.+......+.+|+.++|.|.+.+..|.| .
T Consensus        82 ~L~I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~  160 (222)
T 1q9r_B           82 YLQMNTL-RAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVT  160 (222)
T ss_dssp             EEEECSC-CGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCE
T ss_pred             EEEECcC-CcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCCCE
Confidence            6888885 899999999999987641    112345566643    22232222233456788899999975445888 9


Q ss_pred             EEEeeccccccccCCccEE----EccCccEEEeeeeecCCeeeEEEEeeeccc
Q psy14896        328 YYWARDYFPNFVEEDKRVF----VSYDGALYFSALEQIDAGNYSCNVQSKVSD  376 (813)
Q Consensus       328 v~W~k~~~~~~~~~~~~~~----~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~  376 (813)
                      ++|+++|..+.........    ....+.|.|.++..+| |.|+|.|.|..|.
T Consensus       161 v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~  212 (222)
T 1q9r_B          161 VTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASS  212 (222)
T ss_dssp             EEEGGGTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGT
T ss_pred             EEEecCCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCC
Confidence            9999999875321111110    0112368899998899 9999999998875

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.66  E-value=6.5e-17  Score=159.07  Aligned_cols=178  Identities=15%  Similarity=0.211  Sum_probs=108.7

Q ss_pred             ceeeCCCcee-ecCCCccccccEEEEeeeccC---CCC-eEEEeecccccccccccccccCCCccEEeeCCeEEEcCCcc
Q psy14896        191 YFIKQPTDVV-FDLSKRSILNDITLSCYAGGY---PNP-SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQ  265 (813)
Q Consensus       191 ~~~~~p~~~~-v~~g~~~~g~~v~l~C~~~g~---P~p-~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~  265 (813)
                      +|+..|.... +.+|     ++++|.|.+.|.   |.+ .|+|||++.++............+.++. ...+|.|.+ ++
T Consensus        18 v~~~pp~~~~~v~~G-----~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~-~~s~L~I~~-~~   90 (239)
T 1i1c_A           18 VFIFPPKTKDVLGGG-----LTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLR-SVSELPIVE-RD   90 (239)
T ss_dssp             EEEECCCHHHHTTSS-----SCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEE-EEEEEECCH-HH
T ss_pred             EEEECCChHHhcccC-----CcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEE-EEEEEEEEh-hH
Confidence            3444343332 5555     779999999886   876 9999999976532211000001122222 134577755 58


Q ss_pred             ccCCeeEEEEeecCceee-EeeeeEE--eeeeecccccCCCCceeecCCCeEEEecCCCCCCc-ceEEEeeccccccccC
Q psy14896        266 VEDRGSYHCKASNKFGSI-ISESVQL--AFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPG-VNYYWARDYFPNFVEE  341 (813)
Q Consensus       266 ~~d~G~Y~C~a~n~~g~~-~s~~~~l--~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~-~~v~W~k~~~~~~~~~  341 (813)
                      .+|+|.|+|.|.|..+.. ....+.+  .+..+|.+.+.........|+.++|.|.+.+..|. .+|+|+|||+++....
T Consensus        91 ~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~  170 (239)
T 1i1c_A           91 WLNGKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYK  170 (239)
T ss_dssp             HHTTCCEEEEEECSSSSSCEEEEECCCSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEE
T ss_pred             ccCCCeEEEEEecccCCCCcEEEEecCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCce
Confidence            999999999999988753 2223333  33444555444433333346778999997544666 5999999998753222


Q ss_pred             CccEEEccCccEEEee---eee---cCCeeeEEEEeeecc
Q psy14896        342 DKRVFVSYDGALYFSA---LEQ---IDAGNYSCNVQSKVS  375 (813)
Q Consensus       342 ~~~~~~~~~~~L~i~~---v~~---~D~G~Y~C~a~n~~g  375 (813)
                      ..+.....+|++.+..   +..   +|.|.|+|.|.|...
T Consensus       171 ~~~~~~~~dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~~l  210 (239)
T 1i1c_A          171 NTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGL  210 (239)
T ss_dssp             ECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             ecCceECCCCCEEEEEEEEEChhhcCCCCEEEEEEECCCC
Confidence            2233345666554432   233   468999999998764

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.66  E-value=5.5e-16  Score=152.17  Aligned_cols=177  Identities=16%  Similarity=0.209  Sum_probs=112.2

Q ss_pred             CceeccCCCceEEeCCCCCCC--ccEEEEccCC--CCCc-c-------------cCCCeEEEeeC---c--cEEEEeecc
Q psy14896        577 PEIGNQNWGKAMFCDPPTNYP--GVNYYWARDY--FPNF-V-------------EEDKRVFVSYD---G--ALYFSALEQ  633 (813)
Q Consensus       577 ~~~~~~g~~~~l~C~~~~~~p--~~~v~W~k~~--~~~~-~-------------~~~~~~~~~~~---~--~L~i~~~~~  633 (813)
                      +..+.+|+.++|.|.+ .+.+  .+.+.|||..  .... +             ....|+.+..+   +  +|+|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   87 (232)
T 1dn0_B            9 AGLLKPSETLSLTCAV-YGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTA   87 (232)
T ss_dssp             CCEECTTSCEEEEEEE-ESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CEEEeCCCcEEEEEEE-ccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCCc
Confidence            4567889999999998 4543  5789999853  2110 0             01356666532   2  699999999


Q ss_pred             cCCeeEEEEEEeee--cCc-cccCceeeEEEccCC-CccccccCCCCCCCCCcCCCCC-CeEEEEEEecCC-CCC-eEEE
Q psy14896        634 IDAGNYSCNVQSKV--SDT-GRNGPFFPLKVFPHS-NFQQLKFPNNFPKTFPEAPKAG-DKVRLECVAFGY-PVP-SYNW  706 (813)
Q Consensus       634 ~d~G~Y~C~a~n~~--g~~-~~~~~~~~l~v~~~p-~~~~~~~p~~~~~~~~~~~~~G-~~v~l~C~~~g~-P~p-~i~W  706 (813)
                      +|+|.|.|.+.+..  +.. ........|.|...+ ....+..     ......+..| +.++|.|.+.|. |.| .|+|
T Consensus        88 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~-----~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v~W  162 (232)
T 1dn0_B           88 ADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFP-----LVSCENSPSDTSSVAVGCLAQDFLPDSITFSW  162 (232)
T ss_dssp             GGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEE-----EECC------CCSEEEEEEEEEEBSSCCEEEE
T ss_pred             ccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEE-----eccccccCCCCCcEEEEEEEEEEeCCCeEEEE
Confidence            99999999998421  110 011122567887521 1111110     0001234578 999999999986 876 9999


Q ss_pred             Ee-CCcccCCCc--------eeeecceEEEECCCCC--CCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896        707 TR-RGSPLPRNA--------YFENFNRILTIPNVKV--EDQGEYICRASNDRSALESSVTISIQ  759 (813)
Q Consensus       707 ~k-~g~~l~~~~--------~~~~~~~~L~i~~v~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~  759 (813)
                      ++ ||..+....        ......+.|+|.....  +|.|.|+|.|.|..|.......|.|.
T Consensus       163 ~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~~  226 (232)
T 1dn0_B          163 KYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPVI  226 (232)
T ss_dssp             EETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECCC-
T ss_pred             EcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecCCC
Confidence            99 998875410        0011135799999887  89999999999999987666665544

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.66  E-value=1.6e-15  Score=151.74  Aligned_cols=192  Identities=15%  Similarity=0.167  Sum_probs=118.1

Q ss_pred             ceeeCCCceeecCCCccccccEEEEeeeccC--CCCeEEEeecc--ccccccc------ccccccCCCccEEee------
Q psy14896        191 YFIKQPTDVVFDLSKRSILNDITLSCYAGGY--PNPSYEWFKED--YVQDRLV------ANLIDPLSDKRFTLS------  254 (813)
Q Consensus       191 ~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~--P~p~v~W~k~g--~~l~~~~------~~~~~~~~~~~~~~~------  254 (813)
                      +.+..|....+.+|     ++|+|.|.+.+.  |.+.|.|||..  ..+....      ..........++.+.      
T Consensus        10 v~~~~p~~~~v~~G-----~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~   84 (257)
T 3gkz_A           10 VQLQESGPSLVKPS-----QTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKN   84 (257)
T ss_dssp             EEEEEECCSEECTT-----CCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGT
T ss_pred             EEEECCCCeEEcCC-----CcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCc
Confidence            34444566667666     779999999884  57899999953  2111000      001111223455543      


Q ss_pred             CCeEEEcCCccccCCeeEEEEeecCc---eeeEeeeeEEeeeee--------------cccccCCCCceeecCCCeEEEe
Q psy14896        255 GGNLIINDPRQVEDRGSYHCKASNKF---GSIISESVQLAFGFI--------------GEFNLKRAPEIGNQNWGKAMFC  317 (813)
Q Consensus       255 ~~~l~i~~~~~~~d~G~Y~C~a~n~~---g~~~s~~~~l~v~~~--------------~~~~~~~~~~~~~~~~~~~l~C  317 (813)
                      ..+|.|.+. +.+|+|.|+|.|.|..   ....+..+.|.|...              +.+...+....+.+|+.++|.|
T Consensus        85 ~~~L~I~~v-~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C  163 (257)
T 3gkz_A           85 QVYLQLKSV-SSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTC  163 (257)
T ss_dssp             EEEEEECSC-CGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEE
T ss_pred             eEEEEECCC-ChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEE
Confidence            125888875 8999999999999862   112244566777654              2222233446778999999999


Q ss_pred             cCCCCCCcc-eEEEeec--cccccc----------cCCccEEEccC---ccEEEeeeeecCCeeeEEEEeeeccccCCCC
Q psy14896        318 DPPTNYPGV-NYYWARD--YFPNFV----------EEDKRVFVSYD---GALYFSALEQIDAGNYSCNVQSKVSDTGRNG  381 (813)
Q Consensus       318 ~~~~~~p~~-~v~W~k~--~~~~~~----------~~~~~~~~~~~---~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s  381 (813)
                      .+. +.|.+ .+.|+|.  +.....          ....|+.....   .+|.|.+++.+|+|.|+|.|.+...  ...+
T Consensus       164 ~~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~--~~fg  240 (257)
T 3gkz_A          164 SAS-SSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFP--FTFG  240 (257)
T ss_dssp             EES-SCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSS--CEEC
T ss_pred             EEc-cCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCCc--eEEc
Confidence            964 45665 9999984  332110          01234443322   2699999999999999999987432  2223


Q ss_pred             CceeeEEccC
Q psy14896        382 PFFPLKVFPH  391 (813)
Q Consensus       382 ~~~~l~v~~~  391 (813)
                      ....|.|...
T Consensus       241 ~gt~l~v~~~  250 (257)
T 3gkz_A          241 SGTKLEIKRA  250 (257)
T ss_dssp             CCEEEEECCC
T ss_pred             CCEEEEEEeC
Confidence            3466777544

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.66  E-value=1.7e-15  Score=151.65  Aligned_cols=172  Identities=19%  Similarity=0.257  Sum_probs=109.6

Q ss_pred             CCCceeecCCCccccccEEEEeeeccC--CCCeEEEeecc--cccccccc--cccccCCCccEEee----CCeEEEcCCc
Q psy14896        195 QPTDVVFDLSKRSILNDITLSCYAGGY--PNPSYEWFKED--YVQDRLVA--NLIDPLSDKRFTLS----GGNLIINDPR  264 (813)
Q Consensus       195 ~p~~~~v~~g~~~~g~~v~l~C~~~g~--P~p~v~W~k~g--~~l~~~~~--~~~~~~~~~~~~~~----~~~l~i~~~~  264 (813)
                      .|..+.+.+|     ++|+|.|.+.+.  |.+.+.|||++  ..+.....  .........++...    ..+|.|.+. 
T Consensus         8 ~p~~~~v~~G-----~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v-   81 (256)
T 3ux9_B            8 QPPSVSGAPG-----QRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGL-   81 (256)
T ss_dssp             CCSEEEECTT-----CCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSC-
T ss_pred             cCCcEEEcCC-----CcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCC-
Confidence            3455666666     779999999886  78899999964  21110000  00001122344443    125888885 


Q ss_pred             cccCCeeEEEEeecCcee--eEeeeeEEeeeeecc--------------------cccCCCCceeecCCCeEEEecCCCC
Q psy14896        265 QVEDRGSYHCKASNKFGS--IISESVQLAFGFIGE--------------------FNLKRAPEIGNQNWGKAMFCDPPTN  322 (813)
Q Consensus       265 ~~~d~G~Y~C~a~n~~g~--~~s~~~~l~v~~~~~--------------------~~~~~~~~~~~~~~~~~l~C~~~~~  322 (813)
                      +.+|+|.|+|.|.|..+.  ..+..+.|.|...+.                    .........+.+|+.++|.|.+ .+
T Consensus        82 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~-~~  160 (256)
T 3ux9_B           82 QSEDEADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCAA-SG  160 (256)
T ss_dssp             CGGGCEEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEEE-ES
T ss_pred             ChhhCEEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEEE-eC
Confidence            899999999999986542  224456677765442                    1112334567889999999996 44


Q ss_pred             CC--cceEEEeecc--cccc----c-----------cCCccEEEccCc-----cEEEeeeeecCCeeeEEEEeee
Q psy14896        323 YP--GVNYYWARDY--FPNF----V-----------EEDKRVFVSYDG-----ALYFSALEQIDAGNYSCNVQSK  373 (813)
Q Consensus       323 ~p--~~~v~W~k~~--~~~~----~-----------~~~~~~~~~~~~-----~L~i~~v~~~D~G~Y~C~a~n~  373 (813)
                      .|  .+.+.|+|++  ..+.    +           ....|+.+..++     +|.|.+++.+|+|.|+|.|.|.
T Consensus       161 ~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~  235 (256)
T 3ux9_B          161 FTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYID  235 (256)
T ss_dssp             SCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CcccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcC
Confidence            44  7899999973  2210    0           112355554332     4999999999999999999985

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.66  E-value=4.3e-16  Score=156.25  Aligned_cols=168  Identities=17%  Similarity=0.183  Sum_probs=110.2

Q ss_pred             CCceeccCCCceEEeCCCCCCC------ccEEEEccCC--CCCc--c--------cCCCeEEEeeC---ccEEEEeeccc
Q psy14896        576 APEIGNQNWGKAMFCDPPTNYP------GVNYYWARDY--FPNF--V--------EEDKRVFVSYD---GALYFSALEQI  634 (813)
Q Consensus       576 ~~~~~~~g~~~~l~C~~~~~~p------~~~v~W~k~~--~~~~--~--------~~~~~~~~~~~---~~L~i~~~~~~  634 (813)
                      ....+.+|+.++|.|.+ .+.|      .+.|.|+|+.  ....  +        ....|+.+..+   .+|+|.+++.+
T Consensus        13 ~~v~v~~G~~v~L~C~~-~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~   91 (264)
T 2gjj_A           13 SSLPVSVGEKVTMTCKS-SQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTIGSVKAE   91 (264)
T ss_dssp             SEEEEETTCCEEEEEEE-SSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CeEEecCCCcEEEEeEc-CCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEECCCCHH
Confidence            34567889999999998 5666      6889999963  2211  1        11356665533   36999999999


Q ss_pred             CCeeEEEEEEeeecCccccCceeeEEEccCCCc----------cccccCCC-CCCCCCcCCCCCCeEEEEEEecCCCC--
Q psy14896        635 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNF----------QQLKFPNN-FPKTFPEAPKAGDKVRLECVAFGYPV--  701 (813)
Q Consensus       635 d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~----------~~~~~p~~-~~~~~~~~~~~G~~v~l~C~~~g~P~--  701 (813)
                      |+|.|.|.|.|..+...  .....|.|..+|..          .....|.. +.......+.+|++++|.|.+.+.|.  
T Consensus        92 DsG~Y~C~~~~~~~~~~--~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~  169 (264)
T 2gjj_A           92 DLAVYYCQQYSNYPWTF--GGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKASGYSFTG  169 (264)
T ss_dssp             GCEEEEEEECSSSSCEE--CCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEEESSCGGG
T ss_pred             HCEEEEEEEecCCccEe--cCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEEeCCccCC
Confidence            99999999998754211  12246777765420          00000000 00111235889999999999998874  


Q ss_pred             CeEEEEeCC--cccC-------C----------Cceee------ecceEEEECCCCCCCCEEEEEEEEcC
Q psy14896        702 PSYNWTRRG--SPLP-------R----------NAYFE------NFNRILTIPNVKVEDQGEYICRASND  746 (813)
Q Consensus       702 p~i~W~k~g--~~l~-------~----------~~~~~------~~~~~L~i~~v~~~d~G~Y~C~a~N~  746 (813)
                      +.|.|+|+.  ..+.       .          ..++.      ....+|+|.+++.+|+|.|.|.|.|.
T Consensus       170 ~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          170 YFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN  239 (264)
T ss_dssp             SEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             eEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence            799999973  3211       0          11111      12458999999999999999999995

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.66  E-value=4.1e-16  Score=150.84  Aligned_cols=172  Identities=14%  Similarity=0.185  Sum_probs=109.3

Q ss_pred             CCceeecCCCccccccEEEEeeeccCC--CCeEEEeecc--cccccccc------cccccCCCccEEee---C---CeEE
Q psy14896        196 PTDVVFDLSKRSILNDITLSCYAGGYP--NPSYEWFKED--YVQDRLVA------NLIDPLSDKRFTLS---G---GNLI  259 (813)
Q Consensus       196 p~~~~v~~g~~~~g~~v~l~C~~~g~P--~p~v~W~k~g--~~l~~~~~------~~~~~~~~~~~~~~---~---~~l~  259 (813)
                      |....+.+|     ++++|.|.+.+.|  .+.|.|||++  ..+.....      .........|+.+.   .   .+|.
T Consensus         7 p~~~~v~~G-----~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   81 (210)
T 3d9a_H            7 SGPSLVKPS-----QTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLD   81 (210)
T ss_dssp             ESCSEECTT-----SCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEE
T ss_pred             CCCEEecCC-----CcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEE
Confidence            455566566     7799999999875  4899999974  22110000      00011123455543   1   2788


Q ss_pred             EcCCccccCCeeEEEEeecCceeeEeeeeEEeeee----ecccccCCCCceeecCCCeEEEecCCCCCCcc-eEEEeecc
Q psy14896        260 INDPRQVEDRGSYHCKASNKFGSIISESVQLAFGF----IGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGV-NYYWARDY  334 (813)
Q Consensus       260 i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~----~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~-~v~W~k~~  334 (813)
                      |.+. +.+|+|.|+|.|.|..  .....+.|.|..    +|.+........+..|+.++|.|.+.+..|.+ .++|++++
T Consensus        82 I~~v-~~~D~G~Y~C~~~~~~--~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~  158 (210)
T 3d9a_H           82 LNSV-TTEDTATYYCANWDGD--YWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGS  158 (210)
T ss_dssp             ECSC-CGGGCEEEEEEETTSS--CBCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred             ECCC-CcccCEEEEEEEecCc--ccccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCC
Confidence            8885 8999999999999864  112335566542    22333223334456788899999975445887 99999999


Q ss_pred             ccccccCCccEEEc----cCccEEEeeeeecCCeeeEEEEeeeccc
Q psy14896        335 FPNFVEEDKRVFVS----YDGALYFSALEQIDAGNYSCNVQSKVSD  376 (813)
Q Consensus       335 ~~~~~~~~~~~~~~----~~~~L~i~~v~~~D~G~Y~C~a~n~~g~  376 (813)
                      .++.......+...    ..+.|.|..+..+| |.|+|.|.|..|.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~  203 (210)
T 3d9a_H          159 LSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASS  203 (210)
T ss_dssp             BCTTEEECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGT
T ss_pred             cccceEEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCC
Confidence            86432222222211    12358898888877 9999999998875

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.66  E-value=2.6e-16  Score=158.56  Aligned_cols=169  Identities=19%  Similarity=0.209  Sum_probs=106.8

Q ss_pred             CCCceeccCCCceEEeCCCCCCC-----ccEEEEccCC--CCCc--c--------cCCCeEEEeeC---ccEEEEeeccc
Q psy14896        575 RAPEIGNQNWGKAMFCDPPTNYP-----GVNYYWARDY--FPNF--V--------EEDKRVFVSYD---GALYFSALEQI  634 (813)
Q Consensus       575 ~~~~~~~~g~~~~l~C~~~~~~p-----~~~v~W~k~~--~~~~--~--------~~~~~~~~~~~---~~L~i~~~~~~  634 (813)
                      +....+.+|+.++|.|.+ .+.+     .+.|.|+|++  ....  +        ....|+.+..+   .+|+|.+++.+
T Consensus        22 p~~~~v~~G~~v~L~C~~-~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~  100 (268)
T 1x9q_A           22 PLSLPVSLGDQASISCRS-SQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKINRVEAE  100 (268)
T ss_dssp             CSEECCCTTCCEEEEEEE-SSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CCeEEecCCCCEEEEeEe-cCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEECCCChh
Confidence            344567889999999998 5665     5899999864  2110  0        02356665533   36999999999


Q ss_pred             CCeeEEEEEEeeecCccccCceeeEEEccCCCccccccCC---------------CCCCCCCcCCCCCCeEEEEEEecCC
Q psy14896        635 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPN---------------NFPKTFPEAPKAGDKVRLECVAFGY  699 (813)
Q Consensus       635 d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~---------------~~~~~~~~~~~~G~~v~l~C~~~g~  699 (813)
                      |+|.|.|.|.|..+....  ....|.|...+.......|+               .........+.+|++++|.|.+.|.
T Consensus       101 DsG~Y~C~~~~~~~~~~~--~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~  178 (268)
T 1x9q_A          101 DLGVYFCSQSTHVPWTFG--GGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSCVTSGF  178 (268)
T ss_dssp             GCEEEEEEECSSSSCEEC--CCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEEEEESS
T ss_pred             HCEEEEEEEecCCCceEc--CCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEEEecCc
Confidence            999999999987542111  12456665543210000000               0001123568899999999999988


Q ss_pred             CC--CeEEEEeC--CcccC-------------------CCceeee------cceEEEECCCCCCCCEEEEEEEEcC
Q psy14896        700 PV--PSYNWTRR--GSPLP-------------------RNAYFEN------FNRILTIPNVKVEDQGEYICRASND  746 (813)
Q Consensus       700 P~--p~i~W~k~--g~~l~-------------------~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~a~N~  746 (813)
                      |+  +.+.|+|+  |..+.                   ...++..      ...+|+|.+++.+|+|.|.|.|.|.
T Consensus       179 ~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~  254 (268)
T 1x9q_A          179 TFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYCTGASY  254 (268)
T ss_dssp             CGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             cccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEccC
Confidence            74  79999996  33210                   1112211      1357999999999999999999984

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.65  E-value=3.2e-16  Score=177.33  Aligned_cols=163  Identities=17%  Similarity=0.251  Sum_probs=120.0

Q ss_pred             ceeccCCCceEEeCCCCCCCccEEEEccCCCCCccc----------CCCeEEEeeCccEEEEeecccCCeeEEEEEEeee
Q psy14896        578 EIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVE----------EDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV  647 (813)
Q Consensus       578 ~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~----------~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~  647 (813)
                      ..+.+|+.++|.|.+..+.|.+.|+|+|++.+..+.          ...+..+..+++|.|.+++.+|+|.|+|.|.|..
T Consensus       376 ~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~  455 (581)
T 3o3u_N          376 ITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRN  455 (581)
T ss_dssp             EEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGGGCEEEEEEEECTT
T ss_pred             cceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccccCeEEEEEEEcCC
Confidence            456789999999998667899999999997643211          1345667778899999999999999999999988


Q ss_pred             cCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCC-eEEEEEEecC-CCCCeEEEEeCCcccCCCc-ee-----
Q psy14896        648 SDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGD-KVRLECVAFG-YPVPSYNWTRRGSPLPRNA-YF-----  719 (813)
Q Consensus       648 g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~-~v~l~C~~~g-~P~p~i~W~k~g~~l~~~~-~~-----  719 (813)
                      |...  ...+.|.|..+|....+..+.       ..+.+|+ .+.|.|.+.| .|.|.|+|+|||.+|.... .+     
T Consensus       456 ~~~~--~~~~~l~V~~~~~~p~i~~~~-------~~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~~~~~~  526 (581)
T 3o3u_N          456 GKET--KSNYRVRVYQIPGKPEIVDSA-------SELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQ  526 (581)
T ss_dssp             SCEE--EEEEEEEEEBCCCCCEEESCC-------SEECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTEEEEEE
T ss_pred             Ccee--EEEEEEEEEcCCCCCEEEcCC-------cccccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeEEEEee
Confidence            7542  234778888766544432221       2244454 4567999998 6999999999999886432 11     


Q ss_pred             --e-------ecceEEEECCCCC-CCCEEEEEEEEcCCCc
Q psy14896        720 --E-------NFNRILTIPNVKV-EDQGEYICRASNDRSA  749 (813)
Q Consensus       720 --~-------~~~~~L~i~~v~~-~d~G~Y~C~a~N~~G~  749 (813)
                        .       ...++|+|..++. +|.|.|+|.|+|.++.
T Consensus       527 ~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~  566 (581)
T 3o3u_N          527 TRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPR  566 (581)
T ss_dssp             EEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCS
T ss_pred             eEEcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCC
Confidence              0       0135799999994 4588999999999754

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.65  E-value=6.9e-16  Score=150.85  Aligned_cols=172  Identities=16%  Similarity=0.173  Sum_probs=110.1

Q ss_pred             CCceeecCCCccccccEEEEeeeccCC--CCeEEEeecc--cccccccc-------cccccCCCccEEee------CCeE
Q psy14896        196 PTDVVFDLSKRSILNDITLSCYAGGYP--NPSYEWFKED--YVQDRLVA-------NLIDPLSDKRFTLS------GGNL  258 (813)
Q Consensus       196 p~~~~v~~g~~~~g~~v~l~C~~~g~P--~p~v~W~k~g--~~l~~~~~-------~~~~~~~~~~~~~~------~~~l  258 (813)
                      |....+.+|     ++++|.|.+.+.|  .+.|.|||+.  ..+.....       .........|+.+.      +.+|
T Consensus         7 p~~~~v~~G-----~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   81 (225)
T 1op3_H            7 SGGGLVKAG-----GSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYL   81 (225)
T ss_dssp             ECCEEEETT-----CCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEE
T ss_pred             CCCeEecCC-----CCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEE
Confidence            444566666     7799999999877  7899999974  22210000       00011223455543      2468


Q ss_pred             EEcCCccccCCeeEEEEeecCce-----e--eEeeeeEEeeeee----cccccCCCCceeecCCCeEEEecCCCCCCcc-
Q psy14896        259 IINDPRQVEDRGSYHCKASNKFG-----S--IISESVQLAFGFI----GEFNLKRAPEIGNQNWGKAMFCDPPTNYPGV-  326 (813)
Q Consensus       259 ~i~~~~~~~d~G~Y~C~a~n~~g-----~--~~s~~~~l~v~~~----~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~-  326 (813)
                      .|.+. +.+|+|.|.|.|.|..|     .  .....+.|.|...    |.+........+..|+.++|.|.+.+..|.+ 
T Consensus        82 ~I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~  160 (225)
T 1op3_H           82 QMHKM-RVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV  160 (225)
T ss_dssp             EECSC-CGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCC
T ss_pred             EECCC-ChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCCCcEEEEEEEEeEECCCe
Confidence            88885 89999999999999764     2  2234567777642    2222222222346788899999975445776 


Q ss_pred             eEEEeeccccccccCCccEEEccCc------cEEEeeeeecCCeeeEEEEeeecc
Q psy14896        327 NYYWARDYFPNFVEEDKRVFVSYDG------ALYFSALEQIDAGNYSCNVQSKVS  375 (813)
Q Consensus       327 ~v~W~k~~~~~~~~~~~~~~~~~~~------~L~i~~v~~~D~G~Y~C~a~n~~g  375 (813)
                      .|+|+|++.++........ ...++      .|.|.++..+| |.|+|.|.|..+
T Consensus       161 ~v~W~~~~~~~~~~~~~~~-~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~  213 (225)
T 1op3_H          161 TVSWNSGALTSGVHTFPAV-LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPS  213 (225)
T ss_dssp             EEECCTTSCCTTCEECCCE-ECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGG
T ss_pred             EEEEecCCCcCCeEecCce-eCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCC
Confidence            9999999976322111111 12333      58898888888 999999999765

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.65  E-value=2.7e-16  Score=130.53  Aligned_cols=81  Identities=22%  Similarity=0.368  Sum_probs=70.6

Q ss_pred             CCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCc--ee----eecceEEEECCCCCCCCEEEEEEEEcCCCceEEE
Q psy14896        680 FPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA--YF----ENFNRILTIPNVKVEDQGEYICRASNDRSALESS  753 (813)
Q Consensus       680 ~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~--~~----~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~  753 (813)
                      ....+.+|++++|.|.+.|.|.|.|+|+|||.+|..+.  ++    .....+|.|.+++.+|+|.|+|.|.|.+|.++++
T Consensus        13 ~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   92 (100)
T 3knb_A           13 SDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSAT   92 (100)
T ss_dssp             SEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEEECCCEEEEE
Confidence            34678899999999999999999999999999997654  22    1234689999999999999999999999999999


Q ss_pred             EEEEEEc
Q psy14896        754 VTISIQA  760 (813)
Q Consensus       754 ~~l~V~~  760 (813)
                      +.|.|+.
T Consensus        93 ~~l~V~~   99 (100)
T 3knb_A           93 VNIHIRS   99 (100)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEE
Confidence            9999974

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.65  E-value=1.3e-15  Score=148.21  Aligned_cols=173  Identities=15%  Similarity=0.186  Sum_probs=111.8

Q ss_pred             CCceeecCCCccccccEEEEeeeccCC--CCeEEEeecc--cccccccc-------cccccCCCccEEee------CCeE
Q psy14896        196 PTDVVFDLSKRSILNDITLSCYAGGYP--NPSYEWFKED--YVQDRLVA-------NLIDPLSDKRFTLS------GGNL  258 (813)
Q Consensus       196 p~~~~v~~g~~~~g~~v~l~C~~~g~P--~p~v~W~k~g--~~l~~~~~-------~~~~~~~~~~~~~~------~~~l  258 (813)
                      |..+.+.+|     ++|+|.|.+.+.|  .+.|.|||..  ..+.....       .........|+.+.      +.+|
T Consensus         7 ~~~~~v~~G-----~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L   81 (220)
T 2fbj_H            7 SGGGLVQPG-----GSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYL   81 (220)
T ss_dssp             ECCEEECTT-----CCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEE
T ss_pred             CCCeEecCC-----CcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEE
Confidence            344666666     7799999998866  6799999974  22110000       00111223466543      1368


Q ss_pred             EEcCCccccCCeeEEEEeecCcee--eEeeeeEEeeeee----cccccCCCCceeecCCCeEEEecCCCCCCc--ceEEE
Q psy14896        259 IINDPRQVEDRGSYHCKASNKFGS--IISESVQLAFGFI----GEFNLKRAPEIGNQNWGKAMFCDPPTNYPG--VNYYW  330 (813)
Q Consensus       259 ~i~~~~~~~d~G~Y~C~a~n~~g~--~~s~~~~l~v~~~----~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~--~~v~W  330 (813)
                      .|.+. +.+|+|.|.|.+.|..+.  .....+.|.|...    |.+.+.. +..+..|+.++|.|.+....|.  +.++|
T Consensus        82 ~I~~v-~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W  159 (220)
T 2fbj_H           82 QMSKV-RSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT-LPPALSSDPVIIGCLIHDYFPSGTMNVTW  159 (220)
T ss_dssp             EECSC-CGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC-CCSSSCCSSEEEEEEEEEEBSCCCEEEEE
T ss_pred             EECCC-ChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEee-cccccCCCcEEEEEEEEeEECCCcEEEEE
Confidence            88885 899999999999987543  1234466777532    2222222 3345678889999997655576  89999


Q ss_pred             eeccccccccCCccEEEccCc------cEEEeeeeecCCeeeEEEEeeeccc
Q psy14896        331 ARDYFPNFVEEDKRVFVSYDG------ALYFSALEQIDAGNYSCNVQSKVSD  376 (813)
Q Consensus       331 ~k~~~~~~~~~~~~~~~~~~~------~L~i~~v~~~D~G~Y~C~a~n~~g~  376 (813)
                      ++++..+...... .....++      .|.|.....+|+|.|+|.|.|..+.
T Consensus       160 ~~~~~~~~~~~~~-~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~  210 (220)
T 2fbj_H          160 GKSGKDITTVNFP-PALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNP  210 (220)
T ss_dssp             SCCCSSCEEEECC-CEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSC
T ss_pred             ecCCEecceEecC-ceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCc
Confidence            9999875221111 1122333      4888888888999999999998764

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.64  E-value=4.3e-16  Score=158.74  Aligned_cols=184  Identities=17%  Similarity=0.180  Sum_probs=115.2

Q ss_pred             CceeccCCCceEEeCCCCCCC--ccEEEEccCCC--CCc--c-------------cCCCeEEEee-----CccEEEEeec
Q psy14896        577 PEIGNQNWGKAMFCDPPTNYP--GVNYYWARDYF--PNF--V-------------EEDKRVFVSY-----DGALYFSALE  632 (813)
Q Consensus       577 ~~~~~~g~~~~l~C~~~~~~p--~~~v~W~k~~~--~~~--~-------------~~~~~~~~~~-----~~~L~i~~~~  632 (813)
                      ...+.+|+.++|.|.+ .+.|  .+.+.|+|+..  ...  +             ....|+.+..     +.+|+|.+++
T Consensus        31 ~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~  109 (291)
T 2gki_A           31 PELVKPGASVKMSCKA-SGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSSLT  109 (291)
T ss_dssp             CEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECSCC
T ss_pred             cEEecCCCCEEEEEec-cCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECcCC
Confidence            4567889999999998 5666  57899999642  110  0             0123444432     2469999999


Q ss_pred             ccCCeeEEEEEEeee-cCc-cccCceeeEEEccC-----------CCccccccCCCCCCCCCcCCCCCCeEEEEEEecCC
Q psy14896        633 QIDAGNYSCNVQSKV-SDT-GRNGPFFPLKVFPH-----------SNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGY  699 (813)
Q Consensus       633 ~~d~G~Y~C~a~n~~-g~~-~~~~~~~~l~v~~~-----------p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~  699 (813)
                      .+|+|.|.|.+.|.. |.. ........|.|..+           +....   +.....+....+.+|++++|.|.+.+.
T Consensus       110 ~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~---~~v~~~p~~~~v~~G~~v~L~C~~~~~  186 (291)
T 2gki_A          110 SEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSD---LVMSQSPSSLAVSAGEKVTMSCKSSQS  186 (291)
T ss_dssp             GGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------C---CCEECSCSEEEEETTSCEEEEEEESSC
T ss_pred             HHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCcc---ceEEcCCCEEEEcCCCcEEEEEEcCCc
Confidence            999999999999875 211 01112246777661           10000   000011223568899999999999998


Q ss_pred             CCC------eEEEEeCC--cccC----C--------Cceee----ecceEEEECCCCCCCCEEEEEEEEcCCCceE-EEE
Q psy14896        700 PVP------SYNWTRRG--SPLP----R--------NAYFE----NFNRILTIPNVKVEDQGEYICRASNDRSALE-SSV  754 (813)
Q Consensus       700 P~p------~i~W~k~g--~~l~----~--------~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~-~~~  754 (813)
                      |.+      .+.|+|++  ..+.    .        ..++.    ....+|+|.+++.+|+|.|.|.|.|.....- .-.
T Consensus       187 ~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt  266 (291)
T 2gki_A          187 LFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYHMYTFGSGT  266 (291)
T ss_dssp             CEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEECCCE
T ss_pred             cccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccCCceEEcCCE
Confidence            876      99999963  3221    0        12221    1235799999999999999999999532111 134


Q ss_pred             EEEEEcCCcc
Q psy14896        755 TISIQAEPNF  764 (813)
Q Consensus       755 ~l~V~~~P~~  764 (813)
                      .|.|+..+.-
T Consensus       267 ~l~v~~~~~~  276 (291)
T 2gki_A          267 KLEIKHHHHH  276 (291)
T ss_dssp             EEEEECC---
T ss_pred             EEEEEeeEcC
Confidence            6666665543

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.64  E-value=8.1e-16  Score=149.96  Aligned_cols=174  Identities=17%  Similarity=0.239  Sum_probs=110.1

Q ss_pred             CCceeecCCCccccccEEEEeeeccCC--CCeEEEeeccc--ccccccc---------cccccCCCccEEee----CC--
Q psy14896        196 PTDVVFDLSKRSILNDITLSCYAGGYP--NPSYEWFKEDY--VQDRLVA---------NLIDPLSDKRFTLS----GG--  256 (813)
Q Consensus       196 p~~~~v~~g~~~~g~~v~l~C~~~g~P--~p~v~W~k~g~--~l~~~~~---------~~~~~~~~~~~~~~----~~--  256 (813)
                      |....+.+|     ++++|.|.+.+.|  .+.|.|||++.  .......         .........|+.+.    .+  
T Consensus         7 p~~~~~~~G-----~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   81 (220)
T 1pz5_B            7 SGGGLVQPG-----GSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSV   81 (220)
T ss_dssp             ECCEEECTT-----CCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEE
T ss_pred             cCCEEEcCC-----CeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeE
Confidence            455666666     7799999998876  78999999752  1100000         00011113455543    22  


Q ss_pred             eEEEcCCccccCCeeEEEEeecCceee--EeeeeEEeeee----ecccccCCCCceeecCCCeEEEecCCCCCCcc-eEE
Q psy14896        257 NLIINDPRQVEDRGSYHCKASNKFGSI--ISESVQLAFGF----IGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGV-NYY  329 (813)
Q Consensus       257 ~l~i~~~~~~~d~G~Y~C~a~n~~g~~--~s~~~~l~v~~----~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~-~v~  329 (813)
                      +|.|.+. +.+|+|.|+|.|.|..+..  ....+.|.|..    +|.+........+.+|+.++|.|.+.+..|.| .++
T Consensus        82 ~L~I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~  160 (220)
T 1pz5_B           82 YLQMNNL-RAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVK  160 (220)
T ss_dssp             EEEECSC-CGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEE
T ss_pred             EEEEccC-CHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEE
Confidence            7888885 8999999999999975432  12445666652    22223223233456788999999975445888 999


Q ss_pred             EeeccccccccCCccEE----EccCccEEEeeeeecCCeeeEEEEeeeccc
Q psy14896        330 WARDYFPNFVEEDKRVF----VSYDGALYFSALEQIDAGNYSCNVQSKVSD  376 (813)
Q Consensus       330 W~k~~~~~~~~~~~~~~----~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~  376 (813)
                      |++++.+..........    ....+.|.|.++..+| |.|+|.|.|..|.
T Consensus       161 W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~  210 (220)
T 1pz5_B          161 WNYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASK  210 (220)
T ss_dssp             EGGGTCCTTEEECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGT
T ss_pred             EecCCcccceEEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCcc
Confidence            99998752111111111    1123468898888866 9999999999874

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.64  E-value=2.3e-16  Score=159.10  Aligned_cols=165  Identities=16%  Similarity=0.241  Sum_probs=110.5

Q ss_pred             CCCceeccCCCceEEeCCCCCCCccEEEEccC--CCCCcc-----------c---CCCeEEEee----CccEEEEeeccc
Q psy14896        575 RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARD--YFPNFV-----------E---EDKRVFVSY----DGALYFSALEQI  634 (813)
Q Consensus       575 ~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~--~~~~~~-----------~---~~~~~~~~~----~~~L~i~~~~~~  634 (813)
                      +....+.+|++++|.|.+.  .+.+.|.|+|.  +.....           .   ...|+.+..    +++|+|.+++.+
T Consensus        33 p~~v~v~~G~~v~L~C~~~--~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~  110 (268)
T 3pl6_D           33 PSNKVTEKGKYVELRCDPI--SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQRTERG  110 (268)
T ss_dssp             CSEEEEETTCCEEEEEBCB--TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEECSCCGG
T ss_pred             CCEEEecCCCCEEEEEEeC--CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEECCCCcc
Confidence            3445678999999999983  57789999993  221100           0   014566554    446999999999


Q ss_pred             CCeeEEEEEEeeecCccccCceeeEEEcc------CCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCC--eEEE
Q psy14896        635 DAGNYSCNVQSKVSDTGRNGPFFPLKVFP------HSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVP--SYNW  706 (813)
Q Consensus       635 d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~------~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p--~i~W  706 (813)
                      |+|.|.|.+.|..+. ........|.|..      +|.+...       ......+.+|+.++|.|.+.|.|++  .|+|
T Consensus       111 D~G~Y~C~~~~~~~~-~~~~~~~~l~V~~~~~~~~~P~v~~~-------~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W  182 (268)
T 3pl6_D          111 DSAVYLCATSALGDT-QYFGPGTRLTVLEDLKNVFPPEVAVF-------EPSEAEISHTQKATLVCLATGFYPDHVELSW  182 (268)
T ss_dssp             GCEEEEEEEESSSSS-CEECCCEEEEEESCGGGCBCCEEEEE-------CCCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred             cCEEEEEEEecCCCc-eeeCCcEEEEEecCcccccCCceEEe-------CCCcccccCCCceEEEEEECcccCCCeEEEE
Confidence            999999999974211 1112224566665      2221110       1111335569999999999986654  8999


Q ss_pred             EeCCcccCCCceee---------------ecceEEEECCCCCCC-CEEEEEEEEcCCCc
Q psy14896        707 TRRGSPLPRNAYFE---------------NFNRILTIPNVKVED-QGEYICRASNDRSA  749 (813)
Q Consensus       707 ~k~g~~l~~~~~~~---------------~~~~~L~i~~v~~~d-~G~Y~C~a~N~~G~  749 (813)
                      +|||.++..+....               ...+.|.|.....+| +|.|+|.|.|....
T Consensus       183 ~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~  241 (268)
T 3pl6_D          183 WVNGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS  241 (268)
T ss_dssp             EESSSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             EECCEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCC
Confidence            99999886543221               112467888888887 99999999997543

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.64  E-value=1.2e-16  Score=156.70  Aligned_cols=173  Identities=10%  Similarity=0.105  Sum_probs=106.1

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccC-CC-C-eEEEeeccccc-ccccccccccCCCccEEeeCCeEEEcCCcccc
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGY-PN-P-SYEWFKEDYVQ-DRLVANLIDPLSDKRFTLSGGNLIINDPRQVE  267 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~-P~-p-~v~W~k~g~~l-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~  267 (813)
                      +...|....+.+|     ++++|.|.+.|. |. | .|+|+|+|..+ ..... ......+..+. ...+|.|.+ ++.+
T Consensus        16 ~~~~p~~~~v~~G-----~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~-~~~~~~~g~~~-~~s~L~I~~-~~~~   87 (231)
T 2w59_A           16 YAIPPSPGELYIS-----LDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPM-VLQEHFNGTYS-ASSAVPVST-QDWL   87 (231)
T ss_dssp             EEECCCHHHHHTS-----CCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCC-EEEECTTSCEE-EEEEEECCH-HHHH
T ss_pred             EEeCcChhhcccC-----CceEEEEEEeCccCCCCeEEEEEcCCeeccccccc-cceECCCCcEE-EEEEEEecc-hhcc
Confidence            4456776666666     779999999884 74 5 99999999866 21110 00011222222 123466666 4789


Q ss_pred             CCeeEEEEeecCceeeEeeeeEEeee------eecccccCCCCceeecCCCeEEEecCCCCCCc-ceEEEeecccccccc
Q psy14896        268 DRGSYHCKASNKFGSIISESVQLAFG------FIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPG-VNYYWARDYFPNFVE  340 (813)
Q Consensus       268 d~G~Y~C~a~n~~g~~~s~~~~l~v~------~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~-~~v~W~k~~~~~~~~  340 (813)
                      |+|.|+|.|.|..+..   .+.+.|.      .+|.+.+.........+..++|.|.+.+..|. ++|+|+|||+++...
T Consensus        88 D~g~Y~C~~~~~~~~~---~~~~~v~~~~~~~~~P~v~v~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~  164 (231)
T 2w59_A           88 SGERFTCTVQHEELPL---PLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPAT  164 (231)
T ss_dssp             TTCCEEEEEECTTCSS---CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECCGG
T ss_pred             CCCEEEEEEEcCCCCC---ceEEEEecCCCCCcCCEEEEeCCCHHHhccCceEEEEEEEeccCCCcEEEEEECCEECCCc
Confidence            9999999999987642   2333332      23333332222122234568999997554564 899999999885433


Q ss_pred             C--CccEEEc--------cC-c------cEEEeeeeecCCeeeEEEEeeecc
Q psy14896        341 E--DKRVFVS--------YD-G------ALYFSALEQIDAGNYSCNVQSKVS  375 (813)
Q Consensus       341 ~--~~~~~~~--------~~-~------~L~i~~v~~~D~G~Y~C~a~n~~g  375 (813)
                      .  .......        .+ +      .|.|.....+|.|.|+|.|.|...
T Consensus       165 ~~~~~~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l  216 (231)
T 2w59_A          165 EFVTTAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEAL  216 (231)
T ss_dssp             GCEECCCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             ccccCccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCC
Confidence            2  1111121        33 3      467777778889999999998764

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.64  E-value=1.8e-15  Score=152.45  Aligned_cols=178  Identities=20%  Similarity=0.250  Sum_probs=114.4

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCC-----CCeEEEeecc--cccccccc--cccccCCCccEEee----C
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYP-----NPSYEWFKED--YVQDRLVA--NLIDPLSDKRFTLS----G  255 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P-----~p~v~W~k~g--~~l~~~~~--~~~~~~~~~~~~~~----~  255 (813)
                      .+.++..|..+.+.+|     ++++|.|.+.+.|     .+.|.|||+.  ..+.....  .........|+...    +
T Consensus        15 ~~~v~~~p~~~~v~~G-----~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~   89 (268)
T 1x9q_A           15 DVVMTQTPLSLPVSLG-----DQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTD   89 (268)
T ss_dssp             CCCEEEECSEECCCTT-----CCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTE
T ss_pred             cceEEeeCCeEEecCC-----CCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCE
Confidence            4567777888877776     7799999999877     5899999974  21110000  00011123455543    2


Q ss_pred             CeEEEcCCccccCCeeEEEEeecCceeeEeeeeEEeeeeecc----------------------ccc-CCCCceeecCCC
Q psy14896        256 GNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGE----------------------FNL-KRAPEIGNQNWG  312 (813)
Q Consensus       256 ~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~----------------------~~~-~~~~~~~~~~~~  312 (813)
                      .+|.|.+. +.+|+|.|+|.|.|..+...+..+.|.|...+.                      +.+ .+....+.+|+.
T Consensus        90 ~~L~I~~v-~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~  168 (268)
T 1x9q_A           90 FTLKINRV-EAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGA  168 (268)
T ss_dssp             EEEEESSC-CGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCC
T ss_pred             EEEEECCC-ChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCc
Confidence            36888885 899999999999997654334456666654321                      011 134567788999


Q ss_pred             eEEEecCCCCCC--cceEEEeecc--cccc-c----------------cCCccEEEccC-----ccEEEeeeeecCCeee
Q psy14896        313 KAMFCDPPTNYP--GVNYYWARDY--FPNF-V----------------EEDKRVFVSYD-----GALYFSALEQIDAGNY  366 (813)
Q Consensus       313 ~~l~C~~~~~~p--~~~v~W~k~~--~~~~-~----------------~~~~~~~~~~~-----~~L~i~~v~~~D~G~Y  366 (813)
                      ++|.|.+. +.|  .+.+.|+|++  ..+. +                ....|+.+..+     .+|.|.+++.+|+|.|
T Consensus       169 v~L~C~~~-~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y  247 (268)
T 1x9q_A          169 MKLSCVTS-GFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIY  247 (268)
T ss_dssp             EEEEEEEE-SSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEE
T ss_pred             EEEEEEec-CccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEE
Confidence            99999964 444  3899999863  2210 0                12345555432     4799999999999999


Q ss_pred             EEEEeee
Q psy14896        367 SCNVQSK  373 (813)
Q Consensus       367 ~C~a~n~  373 (813)
                      +|.|.|.
T Consensus       248 ~C~a~~~  254 (268)
T 1x9q_A          248 YCTGASY  254 (268)
T ss_dssp             EEEEEET
T ss_pred             EEEEccC
Confidence            9999874

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.64  E-value=3.8e-16  Score=155.86  Aligned_cols=165  Identities=17%  Similarity=0.270  Sum_probs=110.2

Q ss_pred             CceeccCCCceEEeCCCCCCC--ccEEEEccCC--CCCc-c--------------cCCCeEEEeeC-----ccEEEEeec
Q psy14896        577 PEIGNQNWGKAMFCDPPTNYP--GVNYYWARDY--FPNF-V--------------EEDKRVFVSYD-----GALYFSALE  632 (813)
Q Consensus       577 ~~~~~~g~~~~l~C~~~~~~p--~~~v~W~k~~--~~~~-~--------------~~~~~~~~~~~-----~~L~i~~~~  632 (813)
                      +..+.+|+.++|.|.+ .+.|  .+.|.|||+.  .... +              ....|+.+..+     .+|+|.+++
T Consensus        15 ~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   93 (261)
T 2xqy_G           15 AELVKPGASVKMSCKA-SGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSSLT   93 (261)
T ss_dssp             EEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CEEEcCCCCEEEEEEe-CCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcCCC
Confidence            4567889999999998 5655  6889999974  2210 0              01346666542     369999999


Q ss_pred             ccCCeeEEEEEEeeecCccccCceeeEEEccC----CCccccccCCCCCCCCCcCCCCCCeEEEEEEecCC-CCC-eEEE
Q psy14896        633 QIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPH----SNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGY-PVP-SYNW  706 (813)
Q Consensus       633 ~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~----p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~-P~p-~i~W  706 (813)
                      .+|+|.|.|.+.|..+..........|.|...    |.+..  .++      ...+.+|+.++|.|.+.|. |.| .|+|
T Consensus        94 ~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~--~~p------~~~v~~g~~v~L~C~~~g~~P~~i~v~W  165 (261)
T 2xqy_G           94 SEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYP--LAP------VCGDTTGSSVTLGCLVKGYFPEPVTLTW  165 (261)
T ss_dssp             GGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEE--ECC------CCC--CCSEEEEEEEEEEEBSSCCEEEE
T ss_pred             cccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEE--eCC------CccccCCCcEEEEEEEEeEeCCCCEEEE
Confidence            99999999999985321111112246777752    22211  111      1235789999999999985 776 9999


Q ss_pred             EeCCcccCCCc---eee----ecceEEEECCCCCCCCEEEEEEEEcCCCceE
Q psy14896        707 TRRGSPLPRNA---YFE----NFNRILTIPNVKVEDQGEYICRASNDRSALE  751 (813)
Q Consensus       707 ~k~g~~l~~~~---~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~  751 (813)
                      +|++..+....   ...    ...+.|+|..+..+| |.|+|.|.|......
T Consensus       166 ~k~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~~~  216 (261)
T 2xqy_G          166 NSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTK  216 (261)
T ss_dssp             GGGTCCTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEE
T ss_pred             ecCCCcCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCCcc
Confidence            99998763211   111    123579999998888 999999999765543

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.64  E-value=2.1e-15  Score=147.01  Aligned_cols=164  Identities=17%  Similarity=0.299  Sum_probs=109.9

Q ss_pred             CceeccCCCceEEeCCCCCC--CccEEEEccCCCCCcc-------------------cCCCeEEEeeCc-----cEEEEe
Q psy14896        577 PEIGNQNWGKAMFCDPPTNY--PGVNYYWARDYFPNFV-------------------EEDKRVFVSYDG-----ALYFSA  630 (813)
Q Consensus       577 ~~~~~~g~~~~l~C~~~~~~--p~~~v~W~k~~~~~~~-------------------~~~~~~~~~~~~-----~L~i~~  630 (813)
                      +..+.+|+.++|.|.+ .+.  +.+.+.|||.......                   ....|+.+..++     +|+|.+
T Consensus         9 ~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   87 (221)
T 3m8o_H            9 GGLVQPGGSLKLSCAA-SGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMNS   87 (221)
T ss_dssp             CEEECTTCCEEEEEEE-ESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEECS
T ss_pred             CEEEcCCCCEEEEEEc-ccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEECC
Confidence            4567889999999998 443  3678999984321000                   113566665443     499999


Q ss_pred             ecccCCeeEEEEEEeeecCccccCceeeEEEccCC-Cccccc-cCCCCCCCCCcCCCCCCeEEEEEEecC-CCC--CeEE
Q psy14896        631 LEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHS-NFQQLK-FPNNFPKTFPEAPKAGDKVRLECVAFG-YPV--PSYN  705 (813)
Q Consensus       631 ~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p-~~~~~~-~p~~~~~~~~~~~~~G~~v~l~C~~~g-~P~--p~i~  705 (813)
                      ++.+|+|.|.|.+.|.... ........|.|...+ ....+. .+    +.  .. .+|+.++|.|.+.| .|.  +.|+
T Consensus        88 v~~~DsG~Y~C~~~~~~~~-~~~~~~~~l~V~~~~~~~p~v~~~~----~~--~~-~~g~~v~L~C~~~~~~P~~~~~v~  159 (221)
T 3m8o_H           88 LKSDDTAMYYCVIRGDVYN-RQWGQGTLVTVSSASPTSPKVFPLS----LC--ST-QPDGNVVIACLVQGFFPQEPLSVT  159 (221)
T ss_dssp             CCGGGCEEEEEEEESCTTC-CCBBCCEEEEECSCCCBCCEEEEEE----CC--SC-CCTTEEEEEEEEEEEBSSCSEEEE
T ss_pred             CCHHHCEEEEEEEECCChh-heECCCEEEEEecCCCCCCeEEEec----Cc--cc-ccCCCEEEEEEEEeeECCCCEEEE
Confidence            9999999999999986310 111122457776321 111111 11    00  12 68999999999998 776  4999


Q ss_pred             EEeCCcccCC----------CceeeecceEEEECCCCCCCCEEEEEEEEcCCCce
Q psy14896        706 WTRRGSPLPR----------NAYFENFNRILTIPNVKVEDQGEYICRASNDRSAL  750 (813)
Q Consensus       706 W~k~g~~l~~----------~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~  750 (813)
                      |+|+|..+..          +..+. ..+.|+|..+..+|+|.|+|.|.|..|..
T Consensus       160 W~~~g~~~~~~~~~~~~~~~~~~~~-~~s~L~i~~~~~~d~g~ytC~v~~~~~~~  213 (221)
T 3m8o_H          160 WSESGQGVTARNFPPSQDASGDLYT-TSSQLTLPATQCLAGKSVTCHVKHYTNPS  213 (221)
T ss_dssp             ESCCSTTCEEEECCCEECSSSSCEE-EEEEEEEEGGGSCTTCEEEEEEEETTSCC
T ss_pred             EEECCEECceEEcCceeeCCCCcEE-EEEEEEECHHHcCCCCeEEEEEEECCCCc
Confidence            9999988731          21221 13469999999999999999999987654

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.64  E-value=6.3e-16  Score=129.96  Aligned_cols=92  Identities=23%  Similarity=0.386  Sum_probs=74.0

Q ss_pred             CCCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEee--C--CeEEEcCC
Q psy14896        188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS--G--GNLIINDP  263 (813)
Q Consensus       188 ~~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~--~--~~l~i~~~  263 (813)
                      .||.|+..|.++.+.+|     +++.|.|.+.|.|.|.|+|||||.+|.          .+.++.+.  +  .+|.|.+.
T Consensus        12 ~pP~f~~~p~~~~v~~G-----~~~~l~C~~~G~P~p~v~W~k~g~~l~----------~~~~~~~~~~~~~~~L~I~~v   76 (107)
T 3knb_B           12 SPPCFLRFPRPVRVVSG-----AEAELKCVVLGEPPPVVVWEKGGQQLA----------ASERLSFPADGAEHGLLLTAA   76 (107)
T ss_dssp             EEEEEEECCCCEEEETT-----SCEEEEEEEEEESCCEEEEEETTEECC----------CCSSEECCEETTEEEEEESSC
T ss_pred             CCCEEEeCCCcEEEeCC-----CcEEEEEEEEEecCCEEEEEECccccc----------ceeeEEEeecCceEEEEEecC
Confidence            47999999999998887     679999999999999999999998773          23334332  2  25777775


Q ss_pred             ccccCCeeEEEEeecCceeeEeeeeEEeeeeec
Q psy14896        264 RQVEDRGSYHCKASNKFGSIISESVQLAFGFIG  296 (813)
Q Consensus       264 ~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~  296 (813)
                       +.+|+|.|+|.|.|..|.+ +.++.|.|..+|
T Consensus        77 -~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~~pP  107 (107)
T 3knb_B           77 -LPTDAGVYVCRARNAAGEA-YAAAAVTVLEPP  107 (107)
T ss_dssp             -CGGGCEEEEEEEEETTEEE-EEEEEEEEEC--
T ss_pred             -ChhhCEEEEEEEEECCCEE-EEEEEEEEEcCC
Confidence             8999999999999999987 667888887654

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.64  E-value=8.9e-17  Score=154.87  Aligned_cols=167  Identities=13%  Similarity=0.186  Sum_probs=106.3

Q ss_pred             ccccCeEEEEEeeccC----CCcEEEeeccccccceeccccCCCCCceEEeeCCeEEEeCCCCCCCCceEEEEEEcCcee
Q psy14896        480 SILNDITLSCYAGGYP----NPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGS  555 (813)
Q Consensus       480 ~~g~~~~l~C~~~g~p----~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~  555 (813)
                      .+|+.++|.|.+.|.|    .+.|.|+|++..+..............++ ...+.|.|.++ +.+|+|.|+|.|.|..+.
T Consensus        16 ~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~~-~~~D~G~Y~C~a~~~~~~   93 (207)
T 2vol_A           16 TITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTF-RSVSELPIMHQ-DWLNGKEFKCRVNSAAFP   93 (207)
T ss_dssp             STTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEE-EEEEEEECCHH-HHHTTCCEEEEEECTTCS
T ss_pred             ccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcE-EEEEEEEEehh-HcCCCCEEEEEEEccCCC
Confidence            6899999999999985    24899999996542211000000011222 12357889886 899999999999998775


Q ss_pred             E-EeecEEE--EEeecccccccCCCceeccCCCceEEeCCCCCCCc-cEEEEccCCCCCcccCCCeEEEeeCcc------
Q psy14896        556 I-ISESVQL--AFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPG-VNYYWARDYFPNFVEEDKRVFVSYDGA------  625 (813)
Q Consensus       556 ~-~s~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~v~W~k~~~~~~~~~~~~~~~~~~~~------  625 (813)
                      . ....+.+  .+..+|.+.+.........|+.++|.|.+...+|+ +.|+|+|||.++......+.....+|+      
T Consensus        94 ~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~  173 (207)
T 2vol_A           94 APIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMDTDGSYFVYSK  173 (207)
T ss_dssp             SCEEEEECCCCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEECTTSCEEEEEE
T ss_pred             CceEEEeccCCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceECCCCCEEEEEE
Confidence            3 1122222  34556665544444333458889999999433565 499999999864221111223345665      


Q ss_pred             EEEEeecccCCeeEEEEEEeeec
Q psy14896        626 LYFSALEQIDAGNYSCNVQSKVS  648 (813)
Q Consensus       626 L~i~~~~~~d~G~Y~C~a~n~~g  648 (813)
                      |.|.....+|.|.|+|.|.|...
T Consensus       174 l~i~~~~~~~~g~ytC~a~n~~l  196 (207)
T 2vol_A          174 LNVQKSNWEAGNTFTCSVLHEGL  196 (207)
T ss_dssp             EEEEHHHHSSCCEEEEEEECTTS
T ss_pred             EEECHHHcCCCCEEEEEEECCCC
Confidence            44444455689999999999764

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.64  E-value=6.9e-16  Score=129.15  Aligned_cols=81  Identities=20%  Similarity=0.372  Sum_probs=70.4

Q ss_pred             CCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceee---------ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEE
Q psy14896        684 PKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE---------NFNRILTIPNVKVEDQGEYICRASNDRSALESSV  754 (813)
Q Consensus       684 ~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~---------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~  754 (813)
                      ...|+.+.|.|.+.|.|.|.|+|+|||..|..+.+..         ...++|.|.+++.+|+|.|+|.|.|.+|.++.++
T Consensus        13 ~~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~   92 (103)
T 1wwb_X           13 PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQI   92 (103)
T ss_dssp             CCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             ceECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEE
Confidence            3568899999999999999999999999998765321         1234599999999999999999999999999999


Q ss_pred             EEEEEcCCcc
Q psy14896        755 TISIQAEPNF  764 (813)
Q Consensus       755 ~l~V~~~P~~  764 (813)
                      .|.|..+|.+
T Consensus        93 ~l~V~~~P~~  102 (103)
T 1wwb_X           93 SAHFMGWPGI  102 (103)
T ss_dssp             EECCSCCCCC
T ss_pred             EEEECCCCCC
Confidence            9999988864

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.63  E-value=2.7e-15  Score=151.84  Aligned_cols=193  Identities=15%  Similarity=0.159  Sum_probs=116.9

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccC--CCCeEEEeeccc--cccccccc-------ccccCCCccEEee-C----
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGY--PNPSYEWFKEDY--VQDRLVAN-------LIDPLSDKRFTLS-G----  255 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~--P~p~v~W~k~g~--~l~~~~~~-------~~~~~~~~~~~~~-~----  255 (813)
                      ++. |..+.+.+|     ++|+|.|.+.+.  |.+.+.|||...  .+......       ........|+.+. +    
T Consensus         4 v~q-p~~~~v~~G-----~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~   77 (280)
T 3fku_X            4 LVQ-SGAEVKKPG-----SSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTR   77 (280)
T ss_dssp             EEC-CCCCEECTT-----CCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTT
T ss_pred             EEc-CCCEEECCC-----CcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCC
Confidence            344 667777776     779999999875  668999998531  11100000       0011112344443 1    


Q ss_pred             -CeEEEcCCccccCCeeEEEEeecC--------ceeeEeeeeEEeeee-------------ecccccC-CCCceeecCCC
Q psy14896        256 -GNLIINDPRQVEDRGSYHCKASNK--------FGSIISESVQLAFGF-------------IGEFNLK-RAPEIGNQNWG  312 (813)
Q Consensus       256 -~~l~i~~~~~~~d~G~Y~C~a~n~--------~g~~~s~~~~l~v~~-------------~~~~~~~-~~~~~~~~~~~  312 (813)
                       .+|.|.+. +.+|+|.|.|.|.|.        ........+.|.|..             .+++.+. .....+.+|+.
T Consensus        78 ~~sL~I~~v-~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~v~~G~~  156 (280)
T 3fku_X           78 TAYMDLRSL-RSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPSVSKGLRQT  156 (280)
T ss_dssp             EEEEEECSC-CSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSEEEECTTCC
T ss_pred             EEEEEECCC-ChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCcEEEecCCC
Confidence             26888885 899999999999987        122224456666655             1122222 22267789999


Q ss_pred             eEEEecCCCCCC-cceEEEeec--cccccc----------cCCccEEEccCc---cEEEeeeeecCCeeeEEEEeeeccc
Q psy14896        313 KAMFCDPPTNYP-GVNYYWARD--YFPNFV----------EEDKRVFVSYDG---ALYFSALEQIDAGNYSCNVQSKVSD  376 (813)
Q Consensus       313 ~~l~C~~~~~~p-~~~v~W~k~--~~~~~~----------~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~n~~g~  376 (813)
                      ++|.|.+....+ .+.+.|+|.  +.....          ....|+.+..++   +|.|.+++.+|+|.|+|.+.|..+.
T Consensus       157 v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~  236 (280)
T 3fku_X          157 ATLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSSLS  236 (280)
T ss_dssp             EEEEEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEEETTTT
T ss_pred             EEEEEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEecCCCC
Confidence            999999755344 489999984  222110          112445444333   5999999999999999999986522


Q ss_pred             cCCCCCceeeEEccC
Q psy14896        377 TGRNGPFFPLKVFPH  391 (813)
Q Consensus       377 ~~~~s~~~~l~v~~~  391 (813)
                      ....+....|.|...
T Consensus       237 ~~~~g~~t~l~V~~~  251 (280)
T 3fku_X          237 AVVFGGGTKLTVLGQ  251 (280)
T ss_dssp             EEEEBCCCEEEEC--
T ss_pred             ceEECCCEEEEECCC
Confidence            111223356776543

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.63  E-value=1.8e-16  Score=155.47  Aligned_cols=159  Identities=16%  Similarity=0.266  Sum_probs=105.9

Q ss_pred             ceeccCCCceEEeCCCCCCCc--cEEEEccCCCCCcccCCCeEEEeeCc------cEEEEeecccCCeeEEEEEEeeecC
Q psy14896        578 EIGNQNWGKAMFCDPPTNYPG--VNYYWARDYFPNFVEEDKRVFVSYDG------ALYFSALEQIDAGNYSCNVQSKVSD  649 (813)
Q Consensus       578 ~~~~~g~~~~l~C~~~~~~p~--~~v~W~k~~~~~~~~~~~~~~~~~~~------~L~i~~~~~~d~G~Y~C~a~n~~g~  649 (813)
                      ..+..|+.++|.|.+....|.  ..|+|+|+|..+............+|      +|.|.++..+|+|.|+|.|.|..+.
T Consensus        23 ~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~  102 (231)
T 2w59_A           23 GELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGERFTCTVQHEELP  102 (231)
T ss_dssp             HHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTCS
T ss_pred             hhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCEEEEEEEcCCCC
Confidence            345689999999999433564  49999999987511111122222333      4999999999999999999997753


Q ss_pred             ccccCceeeEEEcc------CCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCC-C-CCeEEEEeCCcccCCCce---
Q psy14896        650 TGRNGPFFPLKVFP------HSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGY-P-VPSYNWTRRGSPLPRNAY---  718 (813)
Q Consensus       650 ~~~~~~~~~l~v~~------~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~-P-~p~i~W~k~g~~l~~~~~---  718 (813)
                      .     .+.+.|..      +|.+...  +    +. ...+ .|..++|.|.+.|+ | .+.|+|+|||.+|..+..   
T Consensus       103 ~-----~~~~~v~~~~~~~~~P~v~v~--~----~~-~~~~-~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~  169 (231)
T 2w59_A          103 L-----PLSKSVYRNTGPTTPPLIYPF--A----PH-PEEL-SLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVTT  169 (231)
T ss_dssp             S-----CEEEEECCCCSCCBCCEEEEE--C----CC-GGGG-GSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCEEC
T ss_pred             C-----ceEEEEecCCCCCcCCEEEEe--C----CC-HHHh-ccCceEEEEEEEeccCCCcEEEEEECCEECCCcccccC
Confidence            1     23455543      2222111  1    00 1112 35679999999986 4 369999999998865531   


Q ss_pred             ---ee--------ec------ceEEEECCCCCCCCEEEEEEEEcCCCc
Q psy14896        719 ---FE--------NF------NRILTIPNVKVEDQGEYICRASNDRSA  749 (813)
Q Consensus       719 ---~~--------~~------~~~L~i~~v~~~d~G~Y~C~a~N~~G~  749 (813)
                         ..        .+      .+.|.|.....+|.|.|+|+|.|....
T Consensus       170 ~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~  217 (231)
T 2w59_A          170 AVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALP  217 (231)
T ss_dssp             CCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTST
T ss_pred             ccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCC
Confidence               11        11      246888888888999999999998654

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.63  E-value=1.8e-16  Score=155.24  Aligned_cols=180  Identities=13%  Similarity=0.180  Sum_probs=106.7

Q ss_pred             CCceeeCCCcee-ecCCCccccccEEEEeeeccC---C-CCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCC
Q psy14896        189 GPYFIKQPTDVV-FDLSKRSILNDITLSCYAGGY---P-NPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDP  263 (813)
Q Consensus       189 ~P~~~~~p~~~~-v~~g~~~~g~~v~l~C~~~g~---P-~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~  263 (813)
                      |+.++..|.... +..|     ++++|.|.+.|.   | .+.|+|+|||.++............+..+... ..|.|.. 
T Consensus        23 P~v~i~~ps~~~~l~~g-----~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~-s~L~i~~-   95 (240)
T 4acp_A           23 PSVFLFPPKPKDTLMIS-----RTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVV-SVLTVLH-   95 (240)
T ss_dssp             CEEEEECCCHHHHHSSS-----SCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCCEEC---CEEEE-EEEECCH-
T ss_pred             CEEEEECcChHHhcccC-----CCcEEEEEEeccccCCCccEEEEEECCcccCCceeccceECCCCeEEEE-EEEEEec-
Confidence            345555555554 4345     779999999985   3 34899999998874322111111223333322 3455544 


Q ss_pred             ccccCCeeEEEEeecCcee-eEeeeeEE--eeeeecccccCCCCceeecCCCeEEEecCCCCCCc-ceEEEeeccccccc
Q psy14896        264 RQVEDRGSYHCKASNKFGS-IISESVQL--AFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPG-VNYYWARDYFPNFV  339 (813)
Q Consensus       264 ~~~~d~G~Y~C~a~n~~g~-~~s~~~~l--~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~-~~v~W~k~~~~~~~  339 (813)
                      ...+|.|.|+|+|.|..+. .....+.+  .+..+|.+.+.........+..++|.|.+...+|. ..++|+|||+++..
T Consensus        96 ~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~~~~~~~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~~~  175 (240)
T 4acp_A           96 QDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENN  175 (240)
T ss_dssp             HHHHHTCCEEEEEECC----CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSS
T ss_pred             hhccCCCEEEEEEEcCCCCccccccccccCCCCCCCEEEEECCChHHhcCCceEEEEEEeEEeCCCcEEEEEECCEECCC
Confidence            3567899999999998763 22334432  23344555554444333447788999997555676 48999999987532


Q ss_pred             cCCccEEEccCccE------EEeeeeecCCeeeEEEEeeecc
Q psy14896        340 EEDKRVFVSYDGAL------YFSALEQIDAGNYSCNVQSKVS  375 (813)
Q Consensus       340 ~~~~~~~~~~~~~L------~i~~v~~~D~G~Y~C~a~n~~g  375 (813)
                      ..........+|++      .|.....+|.|.|+|.|.+...
T Consensus       176 ~~~~~~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~l  217 (240)
T 4acp_A          176 YKATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL  217 (240)
T ss_dssp             EEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             cCccCceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECCC
Confidence            22223333455543      4444444578999999998653

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.63  E-value=3.3e-16  Score=158.06  Aligned_cols=158  Identities=20%  Similarity=0.312  Sum_probs=92.0

Q ss_pred             ecccCCeeEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeC-
Q psy14896        631 LEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRR-  709 (813)
Q Consensus       631 ~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~-  709 (813)
                      ..+.|.+.|.|.|.|..|.....   ..+.|..+|.              ...+.+|++++|.|.+.+ |.+.|.|||. 
T Consensus         3 ~~~~~~~~y~~~~~~~~g~~~~~---~~~~v~~~p~--------------~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~   64 (270)
T 3qib_D            3 NERADLIAYLKQATKGGGGSGGG---GGMKVIQTPR--------------YLVKGQGQKAKMRCIPEK-GHPVVFWYQQN   64 (270)
T ss_dssp             ----------------------------CCCEEECS--------------EEEEETTSCEEEEEECCT-TCCEEEEEEEC
T ss_pred             chhhhHHHHHHHHhccCCccccc---cceeEEeCCC--------------eEEEcCCCCEEEEEEecC-CCceEEEEEEC
Confidence            45789999999999988764433   1222222221              246789999999999976 7789999993 


Q ss_pred             -CcccC------C------Cc----eee-----ecceEEEECCCCCCCCEEEEEEEEcCC----CceEEEEEEEEEc---
Q psy14896        710 -GSPLP------R------NA----YFE-----NFNRILTIPNVKVEDQGEYICRASNDR----SALESSVTISIQA---  760 (813)
Q Consensus       710 -g~~l~------~------~~----~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~N~~----G~~~~~~~l~V~~---  760 (813)
                       +..+.      .      ..    ++.     ..+.+|+|.+++.+|+|.|.|.|.|..    +.....+.|.|..   
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~  144 (270)
T 3qib_D           65 KNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLK  144 (270)
T ss_dssp             TTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCST
T ss_pred             CCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccc
Confidence             22110      0      00    111     124689999999999999999999743    2233456788876   


Q ss_pred             ---CCccc-ccCCceeecCCCeEEEEEEEcc-cCCc-eEEEEECCEeccccc
Q psy14896        761 ---EPNFT-IPLTDKHMDNQADLTWTCEAFG-VPDV-TYSWFRNGELGHQMT  806 (813)
Q Consensus       761 ---~P~~~-~~~~~~~~~~g~~~~l~C~~~g-~p~~-~v~W~k~g~~l~~~~  806 (813)
                         +|.+. ..+....+..|+.++|.|.+.| .|++ .|.|+|||++|..+.
T Consensus       145 ~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~  196 (270)
T 3qib_D          145 NVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGV  196 (270)
T ss_dssp             TCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTE
T ss_pred             cccCCceEEECCCccccccCCceEEEEEecceeCCCeEEEEEECCEECCCCc
Confidence               56544 3344445667999999999998 6666 899999999997643

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.63  E-value=1.1e-15  Score=151.81  Aligned_cols=178  Identities=13%  Similarity=0.159  Sum_probs=111.1

Q ss_pred             ceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeeccc--cccccc------cc-ccccCCCccEEee-----CC
Q psy14896        191 YFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDY--VQDRLV------AN-LIDPLSDKRFTLS-----GG  256 (813)
Q Consensus       191 ~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~--~l~~~~------~~-~~~~~~~~~~~~~-----~~  256 (813)
                      .++..|..+.+.+|     ++++|.|.+.+.|.+.|.|||...  ......      .. ........|+.+.     +.
T Consensus         3 ~v~~~p~~~~v~~G-----~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~   77 (246)
T 4dzb_B            3 VVSQHPSWVISKSG-----TSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLS   77 (246)
T ss_dssp             CEEEECSEEEEETT-----SCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEE
T ss_pred             ccEECCcEEEEeCC-----CcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEE
Confidence            45666777888777     779999999999999999999321  100000      00 0001112455443     23


Q ss_pred             eEEEcCCccccCCeeEEEEeecCce---eeEeeeeEEeeee------ecccccC-CCCceeecCCCeEEEecCCCCCCcc
Q psy14896        257 NLIINDPRQVEDRGSYHCKASNKFG---SIISESVQLAFGF------IGEFNLK-RAPEIGNQNWGKAMFCDPPTNYPGV  326 (813)
Q Consensus       257 ~l~i~~~~~~~d~G~Y~C~a~n~~g---~~~s~~~~l~v~~------~~~~~~~-~~~~~~~~~~~~~l~C~~~~~~p~~  326 (813)
                      +|.|.+. +.+|+|.|+|.|.|..+   ...+..+.|.|..      +|.+.+. +....+.+|+.++|.|.+....|++
T Consensus        78 ~L~I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~  156 (246)
T 4dzb_B           78 TLTVTSA-HPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDH  156 (246)
T ss_dssp             EEEECSC-CGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSC
T ss_pred             EEEECCC-CHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCc
Confidence            6888885 89999999999997643   1223445666653      2222222 2223455688999999964434433


Q ss_pred             -eEEEeeccccccccCCccEEEc--------cCc------cEEEeeeeecC-CeeeEEEEeeeccc
Q psy14896        327 -NYYWARDYFPNFVEEDKRVFVS--------YDG------ALYFSALEQID-AGNYSCNVQSKVSD  376 (813)
Q Consensus       327 -~v~W~k~~~~~~~~~~~~~~~~--------~~~------~L~i~~v~~~D-~G~Y~C~a~n~~g~  376 (813)
                       .++|+|||.++..  ..+....        .++      .|.|.....+| +|.|+|.|.|....
T Consensus       157 ~~v~W~k~g~~l~~--~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~  220 (246)
T 4dzb_B          157 VELSWWVNGKEVHS--GVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS  220 (246)
T ss_dssp             EEEEEEETTEEECT--TEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred             eEEEEEECCEECCC--CcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCC
Confidence             9999999987432  1111110        133      37788887888 99999999997654

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.63  E-value=3.5e-16  Score=155.94  Aligned_cols=175  Identities=16%  Similarity=0.245  Sum_probs=113.6

Q ss_pred             CceeccCCCceEEeCCCCC--CCccEEEEccCCCCC---cc--------------cCCCeEEEeeCc-----cEEEEeec
Q psy14896        577 PEIGNQNWGKAMFCDPPTN--YPGVNYYWARDYFPN---FV--------------EEDKRVFVSYDG-----ALYFSALE  632 (813)
Q Consensus       577 ~~~~~~g~~~~l~C~~~~~--~p~~~v~W~k~~~~~---~~--------------~~~~~~~~~~~~-----~L~i~~~~  632 (813)
                      ...+.+|+.++|.|.+ .+  .+...+.|||.....   .+              ....|+.+..++     +|+|.+++
T Consensus         9 ~v~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (253)
T 3liz_H            9 GGLVQPGGSLKLSCAA-SGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSLK   87 (253)
T ss_dssp             CCEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSCC
T ss_pred             CEEECCCCcEEEEEEe-eCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCCC
Confidence            4567889999999998 34  335789999853110   00              112455555433     39999999


Q ss_pred             ccCCeeEEEEEEeeecC-ccccCceeeEEEcc-CCCccccccCCCCCCCCCcCCCCCCeEEEEEEecC-CCCC-eEEEEe
Q psy14896        633 QIDAGNYSCNVQSKVSD-TGRNGPFFPLKVFP-HSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFG-YPVP-SYNWTR  708 (813)
Q Consensus       633 ~~d~G~Y~C~a~n~~g~-~~~~~~~~~l~v~~-~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g-~P~p-~i~W~k  708 (813)
                      .+|+|.|.|.+.|.... .........|.|.. .+....+..     ......+..|+.++|.|.+.| .|.| .|+|+|
T Consensus        88 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~-----~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~  162 (253)
T 3liz_H           88 SEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYP-----LAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNS  162 (253)
T ss_dssp             GGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEE-----ECC------CCEEEEEEEEEEEBSSCCEEEEGG
T ss_pred             hhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEE-----ecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEe
Confidence            99999999999886211 01111224677762 111111110     011134567999999999998 7766 899999


Q ss_pred             CCcccCC--------CceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896        709 RGSPLPR--------NAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ  759 (813)
Q Consensus       709 ~g~~l~~--------~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  759 (813)
                      +|..+..        ...+. ..+.|+|.....+| |.|+|.|.|..+.......|.+.
T Consensus       163 ~~~~~~~~~~~~~~~~g~~~-~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~~  219 (253)
T 3liz_H          163 GSLSSGVHTFPAVLQSDLYT-LSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVPR  219 (253)
T ss_dssp             GTBCTTEEECCCEEETTEEE-EEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred             CCeecceEeCCccccCCeEE-EEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecCc
Confidence            9974321        11111 13679999999999 99999999999988888887766

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.63  E-value=6.1e-16  Score=153.68  Aligned_cols=166  Identities=14%  Similarity=0.192  Sum_probs=109.5

Q ss_pred             CCCceeccCCCceEEeCCCCCCCccEEEEccCC--CC-----------CcccC---CCeEEEeeC----ccEEEEeeccc
Q psy14896        575 RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDY--FP-----------NFVEE---DKRVFVSYD----GALYFSALEQI  634 (813)
Q Consensus       575 ~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~--~~-----------~~~~~---~~~~~~~~~----~~L~i~~~~~~  634 (813)
                      +....+.+|+.++|.| . .+.+.+.|.|+|..  ..           .....   ..|+.+..+    .+|+|.+++.+
T Consensus         9 p~~v~v~~G~~v~L~C-~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~   86 (245)
T 4ei6_B            9 PSHQIIDMGQMVTLNC-D-PVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPTALE   86 (245)
T ss_dssp             CSEEEEETTCCEEEEE-E-CCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEECSCCGG
T ss_pred             CceEEecCCCCEEEEE-E-cCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEECCCCHh
Confidence            3455678899999999 4 57788999999821  10           00011   156665543    26999999999


Q ss_pred             CCeeEEEEEEeeecC-ccccCceeeEEEcc------CCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCC-CCC-eEE
Q psy14896        635 DAGNYSCNVQSKVSD-TGRNGPFFPLKVFP------HSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGY-PVP-SYN  705 (813)
Q Consensus       635 d~G~Y~C~a~n~~g~-~~~~~~~~~l~v~~------~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~-P~p-~i~  705 (813)
                      |+|.|.|.|.+.... .........|.|..      +|.+...       ......+.+|+.++|.|.+.|. |+| .|+
T Consensus        87 D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~-------~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~  159 (245)
T 4ei6_B           87 DSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVF-------EPSEAEISHTQKATLVCLATGFYPDHVELS  159 (245)
T ss_dssp             GCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEE-------CCCHHHHHHHSEEEEEEEEEEEBSSCEEEE
T ss_pred             HCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEe-------CCCcccccCCCceEEEEEEeeEeCCCeEEE
Confidence            999999999863211 11112234566663      2221110       1111235569999999999984 445 899


Q ss_pred             EEeCCcccCCCceee---------------ecceEEEECCCCCCC-CEEEEEEEEcCCCc
Q psy14896        706 WTRRGSPLPRNAYFE---------------NFNRILTIPNVKVED-QGEYICRASNDRSA  749 (813)
Q Consensus       706 W~k~g~~l~~~~~~~---------------~~~~~L~i~~v~~~d-~G~Y~C~a~N~~G~  749 (813)
                      |+|||..|..+....               ...+.|.|.....+| +|.|+|.|.|....
T Consensus       160 W~~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~  219 (245)
T 4ei6_B          160 WWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS  219 (245)
T ss_dssp             EEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             EEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCC
Confidence            999999887643321               112358999888888 99999999997543

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.62  E-value=6.2e-17  Score=158.50  Aligned_cols=193  Identities=16%  Similarity=0.239  Sum_probs=100.2

Q ss_pred             ceEEEEEEcCceeEEeecEEEEEeecccccccCCCce-eccCCCceEEeCCCCCC--C-ccEEEEccCCCCCcccCCCeE
Q psy14896        543 GSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEI-GNQNWGKAMFCDPPTNY--P-GVNYYWARDYFPNFVEEDKRV  618 (813)
Q Consensus       543 G~Y~C~a~n~~g~~~s~~~~l~v~~~p~~~~~~~~~~-~~~g~~~~l~C~~~~~~--p-~~~v~W~k~~~~~~~~~~~~~  618 (813)
                      |.|.|..+|..+.  .. ....+..|..+...+.+.. +..|+.++|.|.+....  | ...|+|+|||.++........
T Consensus         1 ~~~~~~~~~~~~~--c~-~~~~~~~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~   77 (240)
T 4acp_A            1 GTKSCDKTHTCPP--CP-APELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPR   77 (240)
T ss_dssp             -------------------------CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCC
T ss_pred             CceeeeeeecCCC--CC-ccccCCCCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccc
Confidence            7899999987663  11 1111122223333333444 45699999999995444  4 458999999976321110111


Q ss_pred             EEeeCc------cEEEEeecccCCeeEEEEEEeeecCccccCceee--EEEccCCCccccccCCCCCCCCCcCCCCCCeE
Q psy14896        619 FVSYDG------ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFP--LKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKV  690 (813)
Q Consensus       619 ~~~~~~------~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~--l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v  690 (813)
                      ....++      .|.|.....+|.|.|+|.|.|..+..... ..+.  +.+..+|.+...  +.      ......|+.+
T Consensus        78 ~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~~~~-~~i~~~~~~~~~P~V~v~--~~------~~~~~~g~~~  148 (240)
T 4acp_A           78 EEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIE-KTISKAKGQPREPQVYTL--PP------SRDELTKNQV  148 (240)
T ss_dssp             EEC---CEEEEEEEECCHHHHHHTCCEEEEEECC----CEE-EEECCCCSCCBCCEEEEE--CC------CGGGGGSSEE
T ss_pred             eECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCcccc-ccccccCCCCCCCEEEEE--CC------ChHHhcCCce
Confidence            111233      47777777889999999999987642111 1111  112233333221  11      0122348999


Q ss_pred             EEEEEecC-CCCC-eEEEEeCCcccCCCcee----e-----ecceEEEECCCCCCCCEEEEEEEEcCC
Q psy14896        691 RLECVAFG-YPVP-SYNWTRRGSPLPRNAYF----E-----NFNRILTIPNVKVEDQGEYICRASNDR  747 (813)
Q Consensus       691 ~l~C~~~g-~P~p-~i~W~k~g~~l~~~~~~----~-----~~~~~L~i~~v~~~d~G~Y~C~a~N~~  747 (813)
                      +|.|.+.| .|++ .|+|+|||..+......    .     ...+.|.|.....+|.|.|+|+|.|..
T Consensus       149 ~L~C~~~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~  216 (240)
T 4acp_A          149 SLTCLVKGFYPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA  216 (240)
T ss_dssp             EEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             EEEEEEeEEeCCCcEEEEEECCEECCCcCccCceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECC
Confidence            99999998 4554 89999999987532211    1     112457777766678999999999974

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.62  E-value=1.7e-15  Score=146.97  Aligned_cols=170  Identities=15%  Similarity=0.200  Sum_probs=108.5

Q ss_pred             CCceeccCCCceEEeCCCCCCC--ccEEEEccCC--CCCc--c------------cCCCeEEEeeC-----ccEEEEeec
Q psy14896        576 APEIGNQNWGKAMFCDPPTNYP--GVNYYWARDY--FPNF--V------------EEDKRVFVSYD-----GALYFSALE  632 (813)
Q Consensus       576 ~~~~~~~g~~~~l~C~~~~~~p--~~~v~W~k~~--~~~~--~------------~~~~~~~~~~~-----~~L~i~~~~  632 (813)
                      .+..+.+|+.++|.|.+ .+.+  .+.|.|+|+.  ....  +            ....|+.+..+     .+|+|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   86 (215)
T 1c5d_H            8 GPGLVQPSQTLSLTCTV-SGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQ   86 (215)
T ss_dssp             CCCEECTTCCEEEEEEE-CSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCC
T ss_pred             CCeeecCCCcEEEEEEE-CCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCC
Confidence            34567889999999998 4543  5789999863  2110  0            11346666532     269999999


Q ss_pred             ccCCeeEEEEEEeeecCccccCceeeEEEccCC-CccccccCCCCCCCCCcCCCCCCeEEEEEEecCC-CCC-eEEEEeC
Q psy14896        633 QIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHS-NFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGY-PVP-SYNWTRR  709 (813)
Q Consensus       633 ~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p-~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~-P~p-~i~W~k~  709 (813)
                      .+|+|.|.|.+.|..+..........|.|...+ ..+.+..     ......+.+|+.++|.|.+.|. |.| .|+|+++
T Consensus        87 ~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~-----~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~  161 (215)
T 1c5d_H           87 TEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYP-----LAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSG  161 (215)
T ss_dssp             GGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEE-----ECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGGG
T ss_pred             cccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEe-----ccCChhhccCCcEEEEEEEeeeEcCCcEEEEccC
Confidence            999999999999875321111223567777421 1111110     0001245789999999999987 888 9999999


Q ss_pred             CcccCCCc--e-eeec----ceEEEECCCCCCCCEEEEEEEEcCCCceEEEE
Q psy14896        710 GSPLPRNA--Y-FENF----NRILTIPNVKVEDQGEYICRASNDRSALESSV  754 (813)
Q Consensus       710 g~~l~~~~--~-~~~~----~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~  754 (813)
                      |..+....  . ....    .+.|+  ....+| |.|+|.|.|..|......
T Consensus       162 g~~~~~~~~~~~~~~g~~~~~s~L~--~~~~~~-g~ytC~v~n~~~~~~~~~  210 (215)
T 1c5d_H          162 ALSSDVHTFPAVLQSGLYTLTSSVT--SSTWPS-QTVTCNVAHPASSTKVDK  210 (215)
T ss_dssp             TTCCSCCBCCCEEETTEEEEEEEEE--ESSTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             CccCceEecCcccCCCCEEEEEEEe--cccCCC-CeEEEEEEeCCCCccEEE
Confidence            98653211  1 1111    12244  444456 999999999988765444

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.62  E-value=6.8e-16  Score=152.79  Aligned_cols=166  Identities=17%  Similarity=0.240  Sum_probs=109.3

Q ss_pred             CCCceeccCCCceEEeCCCCCCCccEEEEccCCCCC---------------cccCCCeEEEee----CccEEEEeecccC
Q psy14896        575 RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPN---------------FVEEDKRVFVSY----DGALYFSALEQID  635 (813)
Q Consensus       575 ~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~---------------~~~~~~~~~~~~----~~~L~i~~~~~~d  635 (813)
                      +....+.+|+.++|.|.+ .+ +.+.|.|+|.....               ......|+.+..    +.+|+|.+++.+|
T Consensus         9 p~~v~v~~G~~v~L~C~~-~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D   86 (240)
T 3q5y_A            9 PRHIIKEKGGRSVLTCIP-IS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELED   86 (240)
T ss_dssp             CSEEEEETTCCEEEEEEC-CT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGG
T ss_pred             cceeeecCCCcEEEEEEe-CC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcCChhH
Confidence            344567889999999998 44 77899999932100               001124555543    2359999999999


Q ss_pred             CeeEEEEEEeeecCccccCceeeEEEcc------CCCccccccCCCCCCCCCcCCCCCCeEEEEEEecC-CCCC-eEEEE
Q psy14896        636 AGNYSCNVQSKVSDTGRNGPFFPLKVFP------HSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFG-YPVP-SYNWT  707 (813)
Q Consensus       636 ~G~Y~C~a~n~~g~~~~~~~~~~l~v~~------~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g-~P~p-~i~W~  707 (813)
                      +|.|.|.|.+..+..........|.|..      +|.+...       ......+.+|+.++|.|.+.| .|+| .|+|+
T Consensus        87 ~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~-------~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~  159 (240)
T 3q5y_A           87 SAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLF-------EPSKAEIANKQKATLVCLARGFFPDHVELSWW  159 (240)
T ss_dssp             CEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEE-------CCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred             CEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEe-------CCchhhcccCCceEEEEEEeeEECCCeEEEEE
Confidence            9999999984322112222234566653      2211110       111133556999999999998 5656 79999


Q ss_pred             eCCcccCCCceee-----e------cceEEEECCCCCCC-CEEEEEEEEcCCCc
Q psy14896        708 RRGSPLPRNAYFE-----N------FNRILTIPNVKVED-QGEYICRASNDRSA  749 (813)
Q Consensus       708 k~g~~l~~~~~~~-----~------~~~~L~i~~v~~~d-~G~Y~C~a~N~~G~  749 (813)
                      |||.+|..+....     .      ..+.|.|..+..+| .|.|+|.|.|....
T Consensus       160 ~~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~  213 (240)
T 3q5y_A          160 VNGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLS  213 (240)
T ss_dssp             ETTEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             ECCEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence            9999987644321     1      12349999999988 77999999997543

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.62  E-value=1.7e-15  Score=130.01  Aligned_cols=88  Identities=17%  Similarity=0.218  Sum_probs=77.5

Q ss_pred             CcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeec----ceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEE
Q psy14896        681 PEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENF----NRILTIPNVKVEDQGEYICRASNDRSALESSVTI  756 (813)
Q Consensus       681 ~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l  756 (813)
                      ...+.+|++++|.|.+.|.|.|.|+|+|+|..+..+.++...    ...|.|.+++.+|+|.|+|.|.|..|..+..+.|
T Consensus        16 ~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l   95 (114)
T 2cqv_A           16 DQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNL   95 (114)
T ss_dssp             SEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEE
T ss_pred             CeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEECCCcEEEEEEE
Confidence            367899999999999999999999999999999876554332    5689999999999999999999999999999999


Q ss_pred             EEEcCCcccccC
Q psy14896        757 SIQAEPNFTIPL  768 (813)
Q Consensus       757 ~V~~~P~~~~~~  768 (813)
                      .|..+|..+..+
T Consensus        96 ~V~~~p~~P~~p  107 (114)
T 2cqv_A           96 TVVDKPDPPAGT  107 (114)
T ss_dssp             EEECSCSCCCCC
T ss_pred             EEECCCCCCCCC
Confidence            999988766544

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.61  E-value=2.3e-16  Score=152.06  Aligned_cols=158  Identities=15%  Similarity=0.241  Sum_probs=96.7

Q ss_pred             ccCCCceEEeCCCCCCC----ccEEEEccCCCCCcccCCCeEEEeeCccEEEEe---eccc---CCeeEEEEEEeeecCc
Q psy14896        581 NQNWGKAMFCDPPTNYP----GVNYYWARDYFPNFVEEDKRVFVSYDGALYFSA---LEQI---DAGNYSCNVQSKVSDT  650 (813)
Q Consensus       581 ~~g~~~~l~C~~~~~~p----~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~---~~~~---d~G~Y~C~a~n~~g~~  650 (813)
                      .+|+.++|.|.+ .|.+    .+.|+|+|++.++............+|+|.|..   +...   |+|.|+|.|.|..+..
T Consensus        16 ~~G~~v~L~C~~-~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~   94 (207)
T 1l6x_A           16 MISRTPEVTCVV-VDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA   94 (207)
T ss_dssp             CTTSCCEEEEEE-EEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSS
T ss_pred             ecCCceEEEEEE-ecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCc
Confidence            689999999999 4554    359999999965322111122233456666543   3344   4999999999987653


Q ss_pred             cccCceeeE--EEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCC-CC-CeEEEEeCCcccCCCcee---eecc
Q psy14896        651 GRNGPFFPL--KVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGY-PV-PSYNWTRRGSPLPRNAYF---ENFN  723 (813)
Q Consensus       651 ~~~~~~~~l--~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~-P~-p~i~W~k~g~~l~~~~~~---~~~~  723 (813)
                      ... ..+.+  .+..+|.+...  +.     . .....|..++|.|.+.|. |+ +.|+|+|||.++......   ...+
T Consensus        95 ~~~-~~v~~~~~~~~~P~v~~~--~~-----~-~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~  165 (207)
T 1l6x_A           95 PIE-KTISKAKGQPREPQVYTL--PP-----S-RDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSD  165 (207)
T ss_dssp             CEE-EEECCCCSCCBCCEEEEE--CC-----C-GGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTT
T ss_pred             ceE-EEeccCCCCCcCCEEEEE--CC-----C-hHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccCceECCC
Confidence            111 01111  22333332211  11     0 112246679999999985 54 399999999987643211   1112


Q ss_pred             ------eEEEECCCCCCCCEEEEEEEEcCCC
Q psy14896        724 ------RILTIPNVKVEDQGEYICRASNDRS  748 (813)
Q Consensus       724 ------~~L~i~~v~~~d~G~Y~C~a~N~~G  748 (813)
                            +.|.|.....+|.|.|+|.|.|...
T Consensus       166 gt~~~~s~l~i~~~~~~~~g~YtC~a~n~~l  196 (207)
T 1l6x_A          166 GSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL  196 (207)
T ss_dssp             SCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             CCEEEEEEEEECHHHcCCCCEEEEEEEcCCc
Confidence                  2456666666789999999999854

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.61  E-value=1.8e-15  Score=171.13  Aligned_cols=165  Identities=18%  Similarity=0.256  Sum_probs=115.6

Q ss_pred             ccccEEEEeee-ccCCCCeEEEeeccccccccccccccc-----CCCccEEeeCCeEEEcCCccccCCeeEEEEeecCce
Q psy14896        208 ILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDP-----LSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFG  281 (813)
Q Consensus       208 ~g~~v~l~C~~-~g~P~p~v~W~k~g~~l~~~~~~~~~~-----~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g  281 (813)
                      +|++++|.|.+ .+.|.+.|+|||++..+.....  ...     ..+......+++|.|.+. +.+|+|.|+|.|.|..|
T Consensus       380 ~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~--~~~~~~~~~~~r~~~~~~~~L~i~~v-~~~D~G~Y~C~~~n~~~  456 (581)
T 3o3u_N          380 IGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKV--LSPQGGGPWDSVARVLPNGSLFLPAV-GIQDEGIFRCQAMNRNG  456 (581)
T ss_dssp             TTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEE--CCSCCSSGGGGTSEECTTSCEEESSC-CGGGCEEEEEEEECTTS
T ss_pred             cCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEe--cccCCCCCcCCcEEEcCCceEEEecc-ccccCeEEEEEEEcCCC
Confidence            45889999999 7889999999999874321100  000     012223344678999886 89999999999999998


Q ss_pred             eeEeeeeEEeeeeecc-cccCCCCceeecCCCe-EEEecCCCCCCcceEEEeeccccccccCCccEEEc-------cC--
Q psy14896        282 SIISESVQLAFGFIGE-FNLKRAPEIGNQNWGK-AMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVS-------YD--  350 (813)
Q Consensus       282 ~~~s~~~~l~v~~~~~-~~~~~~~~~~~~~~~~-~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~-------~~--  350 (813)
                      ...+..+.|.|..+|. +.+......+..+... .|.|.+..++|.++|+|++||+++..... ++.+.       ..  
T Consensus       457 ~~~~~~~~l~V~~~~~~p~i~~~~~~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~-~~~~~~~~~~~~~~g~  535 (581)
T 3o3u_N          457 KETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEK-GVSVKEQTRRHPETGL  535 (581)
T ss_dssp             CEEEEEEEEEEEBCCCCCEEESCCSEECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTST-TEEEEEEEEECTTTCC
T ss_pred             ceeEEEEEEEEEcCCCCCEEEcCCcccccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCC-eEEEEeeeEEcCCCce
Confidence            8766778888876554 3333444455566555 46999765579999999999988643322 22221       22  


Q ss_pred             ----ccEEEeeee-ecCCeeeEEEEeeeccc
Q psy14896        351 ----GALYFSALE-QIDAGNYSCNVQSKVSD  376 (813)
Q Consensus       351 ----~~L~i~~v~-~~D~G~Y~C~a~n~~g~  376 (813)
                          .+|.|.++. .+|.|.|+|.|.|..+.
T Consensus       536 y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~  566 (581)
T 3o3u_N          536 FTLQSELMVTPARGGDPRPTFSCSFSPGLPR  566 (581)
T ss_dssp             EEEEEEEEECCCTTSCSCCCEEEEEECSSCS
T ss_pred             EEEEEEEEEEeccccCCCceEEEEEeccCCC
Confidence                258899988 45578999999998643

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.61  E-value=1.2e-15  Score=154.57  Aligned_cols=168  Identities=15%  Similarity=0.268  Sum_probs=112.3

Q ss_pred             CCCceeccCCCceEEeCCCCCCCccEEEEccCCC--CCc------------c---cCCCeEEEeeC----ccEEEEeecc
Q psy14896        575 RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYF--PNF------------V---EEDKRVFVSYD----GALYFSALEQ  633 (813)
Q Consensus       575 ~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~--~~~------------~---~~~~~~~~~~~----~~L~i~~~~~  633 (813)
                      +....+.+|+.++|.|.+ .+.|.+.|.|+|++.  ...            .   ....|+.+..+    .+|.|.+++.
T Consensus        31 p~~v~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~  109 (279)
T 2wbj_D           31 PSWVISKSGTSVKIECRS-LDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHP  109 (279)
T ss_dssp             CSEEEEETTSCEEEEEEE-SSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEEESSCCG
T ss_pred             CCeEEecCCCeEEEEEEe-CCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEEEccCCc
Confidence            344567889999999999 678889999999642  100            0   11356666542    3699999999


Q ss_pred             cCCeeEEEEEEeeecCc---cccCceeeEEEccC------CCccccccCCCCCCCCCcCCCCCCeEEEEEEecCC-CC-C
Q psy14896        634 IDAGNYSCNVQSKVSDT---GRNGPFFPLKVFPH------SNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGY-PV-P  702 (813)
Q Consensus       634 ~d~G~Y~C~a~n~~g~~---~~~~~~~~l~v~~~------p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~-P~-p  702 (813)
                      +|+|.|.|.|.|..|..   ........|.|...      |.+...       ......+.+|+.++|.|.+.|. |+ |
T Consensus       110 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~-------~~~~~~~~~g~~v~L~C~~~g~~P~~~  182 (279)
T 2wbj_D          110 EDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVF-------EPSEAEISHTQKATLVCLATGFYPDHV  182 (279)
T ss_dssp             GGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEE-------ECCHHHHHHHSCCEEEEEEEEEBSSCE
T ss_pred             cCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEE-------CCCcccccCCCceEEEEEEeeEcCCCc
Confidence            99999999999943210   00112245777642      222110       0111234579999999999987 43 6


Q ss_pred             eEEEEeCCcccCCCceee----------e-----cceEEEECCCCCCC-CEEEEEEEEcCCCce
Q psy14896        703 SYNWTRRGSPLPRNAYFE----------N-----FNRILTIPNVKVED-QGEYICRASNDRSAL  750 (813)
Q Consensus       703 ~i~W~k~g~~l~~~~~~~----------~-----~~~~L~i~~v~~~d-~G~Y~C~a~N~~G~~  750 (813)
                      .|+|+|||.++..+....          .     ..+.|.|.....+| .|.|+|.|.|.....
T Consensus       183 ~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~~  246 (279)
T 2wbj_D          183 ELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSE  246 (279)
T ss_dssp             EEEEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBCT
T ss_pred             EEEEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCCC
Confidence            999999999886543221          1     12358898888765 778999999986544

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.61  E-value=1.7e-15  Score=153.38  Aligned_cols=186  Identities=14%  Similarity=0.211  Sum_probs=112.7

Q ss_pred             CCCceeccCCCceEEeCCCCCC--CccEEEEccCCCCC----cc-------------cCCCeEEEeeCc-----cEEEEe
Q psy14896        575 RAPEIGNQNWGKAMFCDPPTNY--PGVNYYWARDYFPN----FV-------------EEDKRVFVSYDG-----ALYFSA  630 (813)
Q Consensus       575 ~~~~~~~~g~~~~l~C~~~~~~--p~~~v~W~k~~~~~----~~-------------~~~~~~~~~~~~-----~L~i~~  630 (813)
                      +....+.+|+.++|.|.+ .+.  +.+.+.|||.....    ..             ....|+.+..++     +|.|.+
T Consensus         7 p~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (280)
T 3fku_X            7 SGAEVKKPGSSVKVSCTS-SEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRS   85 (280)
T ss_dssp             CCCCEECTTCCEEEEEEE-CCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECS
T ss_pred             CCCEEECCCCcEEEEEEe-eccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECC
Confidence            345667889999999998 443  56889999853110    00             012355555332     599999


Q ss_pred             ecccCCeeEEEEEEeee---c---CccccCceeeEEEcc-CCCc-----cccccCCCCCCCCCcCCCCCCeEEEEEEecC
Q psy14896        631 LEQIDAGNYSCNVQSKV---S---DTGRNGPFFPLKVFP-HSNF-----QQLKFPNNFPKTFPEAPKAGDKVRLECVAFG  698 (813)
Q Consensus       631 ~~~~d~G~Y~C~a~n~~---g---~~~~~~~~~~l~v~~-~p~~-----~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g  698 (813)
                      ++.+|+|.|.|.+.|..   |   ..........|.|.. ++..     .....+..+.......+.+|++|+|.|.+.+
T Consensus        86 v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~v~~G~~v~L~C~~~~  165 (280)
T 3fku_X           86 LRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPSVSKGLRQTATLTCTGNS  165 (280)
T ss_dssp             CCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSEEEECTTCCEEEEEECCC
T ss_pred             CChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCcEEEecCCCEEEEEEecC
Confidence            99999999999999861   0   001111234577765 1100     0000000001111167899999999999998


Q ss_pred             -CC-CCeEEEEeC--CcccC------------CCceee----ecceEEEECCCCCCCCEEEEEEEEcCCCc---eEEEEE
Q psy14896        699 -YP-VPSYNWTRR--GSPLP------------RNAYFE----NFNRILTIPNVKVEDQGEYICRASNDRSA---LESSVT  755 (813)
Q Consensus       699 -~P-~p~i~W~k~--g~~l~------------~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~---~~~~~~  755 (813)
                       .+ .+.+.|||.  +..+.            ...++.    .....|+|.+++.+|+|.|.|.|.|..+.   -.....
T Consensus       166 ~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~g~~t~  245 (280)
T 3fku_X          166 NNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSSLSAVVFGGGTK  245 (280)
T ss_dssp             CCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEEETTTTEEEEBCCCE
T ss_pred             CCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEecCCCCceEECCCEE
Confidence             44 379999983  33221            011111    12346999999999999999999997632   223456


Q ss_pred             EEEEcC
Q psy14896        756 ISIQAE  761 (813)
Q Consensus       756 l~V~~~  761 (813)
                      |.|...
T Consensus       246 l~V~~~  251 (280)
T 3fku_X          246 LTVLGQ  251 (280)
T ss_dssp             EEEC--
T ss_pred             EEECCC
Confidence            777543

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.61  E-value=8.6e-15  Score=137.48  Aligned_cols=202  Identities=17%  Similarity=0.256  Sum_probs=138.9

Q ss_pred             CCCceeccCCCceEEeCCCCCCC---ccEEEEccCCCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEEEEeeecCcc
Q psy14896        575 RAPEIGNQNWGKAMFCDPPTNYP---GVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTG  651 (813)
Q Consensus       575 ~~~~~~~~g~~~~l~C~~~~~~p---~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  651 (813)
                      +.-.....|+.++|+|.+..|.|   +..++|+|||.++  .       ...++|.|..+...|+|.|+|++.|..|-..
T Consensus         9 P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~I--s-------GaT~tLti~s~t~sdSG~YqCvVTDa~Gcs~   79 (304)
T 3shs_A            9 SNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPH--E-------NNTATLTVADATSENAGSYKVTVQDTDTMTS   79 (304)
T ss_dssp             ESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEEC--S-------CCSSEEEESSCCGGGCEEEEEEEEETTTCCE
T ss_pred             CCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccc--c-------CCcceEEeeeccccCCeEEEEEEEECCCCee
Confidence            34455678999999999977878   5689999998652  1       1345799999999999999999999876543


Q ss_pred             ccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEe--c-CCC-----CCeEEEEeCCcccCCCceeeecc
Q psy14896        652 RNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVA--F-GYP-----VPSYNWTRRGSPLPRNAYFENFN  723 (813)
Q Consensus       652 ~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~--~-g~P-----~p~i~W~k~g~~l~~~~~~~~~~  723 (813)
                      ... .+.+.....+. ..+..|      .+..+..|..+.|.+.+  . |.|     ...++|+||+..+..       .
T Consensus        80 tSs-~VtVT~~a~l~-i~it~P------~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~Isg-------A  144 (304)
T 3shs_A           80 VES-EVFLMEEAELI-VNITEP------QHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDT-------T  144 (304)
T ss_dssp             EEC-CCEEECBCCEE-EEESSC------SEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEES-------S
T ss_pred             eee-eEEEeccCcee-EEecCC------CceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccC-------c
Confidence            322 22233222211 111111      12345678899999988  5 455     359999999987743       3


Q ss_pred             eEEEECCCCCCCCEEEEEEEEcCCCc--eEEEEEEEEEcCCcccccCCceeecCCCeEEEEEEEc--------ccCCc--
Q psy14896        724 RILTIPNVKVEDQGEYICRASNDRSA--LESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAF--------GVPDV--  791 (813)
Q Consensus       724 ~~L~i~~v~~~d~G~Y~C~a~N~~G~--~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~--------g~p~~--  791 (813)
                      ..|++......++|.|+|++.|..|.  .+.++.+.+..-+.-..-....++..|+.+.|.-.+.        |.|..  
T Consensus       145 q~lT~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (304)
T 3shs_A          145 QDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTI  224 (304)
T ss_dssp             SEEEECSCCGGGCEEEEEEEESSSGGGCEEEEEEEEECEEEEEECCCSEEEEETTSCEEECCEEEEECCSCCTTCCEEEE
T ss_pred             cccceeeEEecCCeEEEEEEEcCCCCcccccceEEEEEccccchhheEeehhhcCcEEEEEEEEeeccccCCCCCCceEE
Confidence            47888899999999999999999774  4555666655444333334566788899998877653        44543  


Q ss_pred             eEEEE--ECCE
Q psy14896        792 TYSWF--RNGE  800 (813)
Q Consensus       792 ~v~W~--k~g~  800 (813)
                      ++.||  |+|+
T Consensus       225 ~~~~~~~~~~~  235 (304)
T 3shs_A          225 KYNWYLQREGQ  235 (304)
T ss_dssp             EEEEEEECTTC
T ss_pred             EEEEEEeecCc
Confidence            57887  4554

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.61  E-value=8.1e-15  Score=149.29  Aligned_cols=189  Identities=15%  Similarity=0.145  Sum_probs=115.9

Q ss_pred             CCCceeecCCCccccccEEEEeeeccCC--CCeEEEeeccc--ccccccc-------cccccCCCccEEee------CCe
Q psy14896        195 QPTDVVFDLSKRSILNDITLSCYAGGYP--NPSYEWFKEDY--VQDRLVA-------NLIDPLSDKRFTLS------GGN  257 (813)
Q Consensus       195 ~p~~~~v~~g~~~~g~~v~l~C~~~g~P--~p~v~W~k~g~--~l~~~~~-------~~~~~~~~~~~~~~------~~~  257 (813)
                      +|..+.+.+|     ++++|.|.+.+.|  .+.|.|||+..  .+.....       .........|+...      +.+
T Consensus        28 ~p~~~~v~~G-----~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s  102 (291)
T 2gki_A           28 QSGPELVKPG-----ASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAY  102 (291)
T ss_dssp             ECCCEEECTT-----CCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEE
T ss_pred             cCCcEEecCC-----CCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEE
Confidence            4556777666     7799999998877  68999999742  1110000       00001112344332      246


Q ss_pred             EEEcCCccccCCeeEEEEeecCc-e---eeEeeeeEEeeeee--------------cccccC--CCCceeecCCCeEEEe
Q psy14896        258 LIINDPRQVEDRGSYHCKASNKF-G---SIISESVQLAFGFI--------------GEFNLK--RAPEIGNQNWGKAMFC  317 (813)
Q Consensus       258 l~i~~~~~~~d~G~Y~C~a~n~~-g---~~~s~~~~l~v~~~--------------~~~~~~--~~~~~~~~~~~~~l~C  317 (813)
                      |.|.+. +.+|+|.|+|.+.|.. |   ......+.|.|..+              +.+.+.  +....+.+|+.++|.|
T Consensus       103 L~I~~v-~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C  181 (291)
T 2gki_A          103 MELSSL-TSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSC  181 (291)
T ss_dssp             EEECSC-CGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEE
T ss_pred             EEECcC-CHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEE
Confidence            888885 8999999999999874 2   11223456666551              122222  3345678999999999


Q ss_pred             cCCCCCCcc------eEEEeecc--cccc--c--------cCCccEEEccC---ccEEEeeeeecCCeeeEEEEeeeccc
Q psy14896        318 DPPTNYPGV------NYYWARDY--FPNF--V--------EEDKRVFVSYD---GALYFSALEQIDAGNYSCNVQSKVSD  376 (813)
Q Consensus       318 ~~~~~~p~~------~v~W~k~~--~~~~--~--------~~~~~~~~~~~---~~L~i~~v~~~D~G~Y~C~a~n~~g~  376 (813)
                      .+ .+.|.+      .+.|+|++  ....  .        ....|+.+..+   .+|.|.+++.+|+|.|+|.|.|... 
T Consensus       182 ~~-~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~-  259 (291)
T 2gki_A          182 KS-SQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYHM-  259 (291)
T ss_dssp             EE-SSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTE-
T ss_pred             Ec-CCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccCCc-
Confidence            96 455655      99999973  3211  1        01345544322   3799999999999999999998432 


Q ss_pred             cCCCCCceeeEEccCC
Q psy14896        377 TGRNGPFFPLKVFPHS  392 (813)
Q Consensus       377 ~~~~s~~~~l~v~~~~  392 (813)
                       ........|.|...+
T Consensus       260 -~~fg~gt~l~v~~~~  274 (291)
T 2gki_A          260 -YTFGSGTKLEIKHHH  274 (291)
T ss_dssp             -EEECCCEEEEEECC-
T ss_pred             -eEEcCCEEEEEEeeE
Confidence             112223566665543

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.61  E-value=1.9e-15  Score=148.12  Aligned_cols=174  Identities=15%  Similarity=0.215  Sum_probs=107.9

Q ss_pred             CCceeecCCCccccccEEEEeeeccCCC----CeEEEeecc--cccccccc------cccccCCCccEEee------CCe
Q psy14896        196 PTDVVFDLSKRSILNDITLSCYAGGYPN----PSYEWFKED--YVQDRLVA------NLIDPLSDKRFTLS------GGN  257 (813)
Q Consensus       196 p~~~~v~~g~~~~g~~v~l~C~~~g~P~----p~v~W~k~g--~~l~~~~~------~~~~~~~~~~~~~~------~~~  257 (813)
                      |..+.+.+|     ++++|.|.+.+.|.    +.|.|||++  ..+.....      .........|+.+.      +.+
T Consensus         7 p~~~~v~~G-----~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~   81 (228)
T 3bae_H            7 SGPGLLKPS-----QTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVF   81 (228)
T ss_dssp             ECCSEECTT-----CCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEE
T ss_pred             CCceeecCC-----CeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEE
Confidence            445566566     77999999998775    899999974  22110000      00111223455543      246


Q ss_pred             EEEcCCccccCCeeEEEEeecCce------e--eEeeeeEEeeee----ecccccCCCCceeecCCCeEEEecCCCCCCc
Q psy14896        258 LIINDPRQVEDRGSYHCKASNKFG------S--IISESVQLAFGF----IGEFNLKRAPEIGNQNWGKAMFCDPPTNYPG  325 (813)
Q Consensus       258 l~i~~~~~~~d~G~Y~C~a~n~~g------~--~~s~~~~l~v~~----~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~  325 (813)
                      |.|.+. +.+|+|.|.|.|.|..|      .  .....+.|.|..    +|.+........+..|+.++|.|.+....|.
T Consensus        82 L~I~~v-~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~  160 (228)
T 3bae_H           82 MKITSV-DTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPE  160 (228)
T ss_dssp             EEECSC-CGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCSEEEEEEEEEEEBSS
T ss_pred             EEEcCC-CcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCCCEEEEEEEccEeCC
Confidence            888885 89999999999998754      1  122346677653    2222222222335678889999997555587


Q ss_pred             c-eEEEeeccccccccCCccEEEc----cCccEEEeeeeecCCeeeEEEEeeeccc
Q psy14896        326 V-NYYWARDYFPNFVEEDKRVFVS----YDGALYFSALEQIDAGNYSCNVQSKVSD  376 (813)
Q Consensus       326 ~-~v~W~k~~~~~~~~~~~~~~~~----~~~~L~i~~v~~~D~G~Y~C~a~n~~g~  376 (813)
                      + .++|++++..+.......+...    ..+.|.|..+..+| |.|+|.|.|..+.
T Consensus       161 p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~  215 (228)
T 3bae_H          161 PVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASS  215 (228)
T ss_dssp             CCEEEEGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGT
T ss_pred             CEEEEEeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCC
Confidence            7 9999999876422211111111    12358888888766 9999999998874

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.60  E-value=2.7e-15  Score=127.57  Aligned_cols=81  Identities=19%  Similarity=0.219  Sum_probs=70.7

Q ss_pred             CCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceee-----------ecceEEEECCCCCCCCEEEEEEEEcCCCceEE
Q psy14896        684 PKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE-----------NFNRILTIPNVKVEDQGEYICRASNDRSALES  752 (813)
Q Consensus       684 ~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~-----------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~  752 (813)
                      ...+..+.|.|.+.|+|.|.|+|+|||.+|..+.+..           ...+.|.|.++..+|+|.|+|+|.|.+|.+++
T Consensus        12 ~~~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~   91 (126)
T 1he7_A           12 AVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASA   91 (126)
T ss_dssp             CCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEE
T ss_pred             CccCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEE
Confidence            3467899999999999999999999999998765421           12468999999999999999999999999999


Q ss_pred             EEEEEEEcCCcc
Q psy14896        753 SVTISIQAEPNF  764 (813)
Q Consensus       753 ~~~l~V~~~P~~  764 (813)
                      ++.|.|..+|.-
T Consensus        92 t~~l~v~~~P~~  103 (126)
T 1he7_A           92 SIMAAFMDNPFE  103 (126)
T ss_dssp             EEEECCCSCTTS
T ss_pred             EEEEEEEcCCCC
Confidence            999999988854

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.60  E-value=1.7e-14  Score=142.68  Aligned_cols=178  Identities=14%  Similarity=0.192  Sum_probs=111.1

Q ss_pred             ceeeCCCceeecCCCccccccEEEEeeeccC--CCCeEEEeecc--ccccccccc------ccccC-CCccEEee-----
Q psy14896        191 YFIKQPTDVVFDLSKRSILNDITLSCYAGGY--PNPSYEWFKED--YVQDRLVAN------LIDPL-SDKRFTLS-----  254 (813)
Q Consensus       191 ~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~--P~p~v~W~k~g--~~l~~~~~~------~~~~~-~~~~~~~~-----  254 (813)
                      .++..|..+.+.+|     ++++|.|.+.+.  +.+.|.|||+.  ..+......      ..... ...|+.+.     
T Consensus         3 ~v~q~p~~v~~~~G-----~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~   77 (242)
T 1hxm_B            3 HLEQPQISSTKTLS-----KTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPET   77 (242)
T ss_dssp             EEECCCSEEEEETT-----CCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTT
T ss_pred             ccCcCCceEEecCC-----CcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCC
Confidence            34555677777777     779999999875  67899999964  222111000      00111 34566543     


Q ss_pred             -CCeEEEcCCccccCCeeEEEEeecCc------eeeEeeeeEEeeeee-------cccccC-CCCceeecCCCeEEEecC
Q psy14896        255 -GGNLIINDPRQVEDRGSYHCKASNKF------GSIISESVQLAFGFI-------GEFNLK-RAPEIGNQNWGKAMFCDP  319 (813)
Q Consensus       255 -~~~l~i~~~~~~~d~G~Y~C~a~n~~------g~~~s~~~~l~v~~~-------~~~~~~-~~~~~~~~~~~~~l~C~~  319 (813)
                       +.+|.|.+. +.+|+|.|.|.+.+..      .......+.|.|...       |.+.+. +....+..|+.++|.|.+
T Consensus        78 ~~~~L~I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~  156 (242)
T 1hxm_B           78 STSTLTIHNV-EKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLL  156 (242)
T ss_dssp             TEEEEEECSC-CGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEE
T ss_pred             cEEEEEECCC-CcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEE
Confidence             236888885 8999999999999753      112234567777652       223332 222344568889999997


Q ss_pred             CCCCCc-ceEEEeeccc-cccccCCccEEEccC------ccEEEeeeeecCCeeeEEEEeeecccc
Q psy14896        320 PTNYPG-VNYYWARDYF-PNFVEEDKRVFVSYD------GALYFSALEQIDAGNYSCNVQSKVSDT  377 (813)
Q Consensus       320 ~~~~p~-~~v~W~k~~~-~~~~~~~~~~~~~~~------~~L~i~~v~~~D~G~Y~C~a~n~~g~~  377 (813)
                      .+..|. +.++|++++. ++.......... .+      ..|.|..+.. | |.|+|.|.|..+..
T Consensus       157 ~g~~P~~~~v~W~~~~~~~l~~~~~~~~~~-~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~  219 (242)
T 1hxm_B          157 EKFFPDVIKIHWEEKKSNTILGSQEGNTMK-TNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKN  219 (242)
T ss_dssp             EEESSCCEEEEEEESSSCCCCCCEECCCEE-CSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGG
T ss_pred             eeEECCCeEEEEEcCCCEeecCccccceec-CCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCC
Confidence            644575 8999999987 442111111111 22      2577877664 5 99999999988753

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.60  E-value=1.3e-15  Score=151.12  Aligned_cols=167  Identities=17%  Similarity=0.248  Sum_probs=96.4

Q ss_pred             CceeccCCCceEEeCCCCCCC--ccEEEEccCCC--CCc-c--------------cCCCeEEEeeC-----ccEEEEeec
Q psy14896        577 PEIGNQNWGKAMFCDPPTNYP--GVNYYWARDYF--PNF-V--------------EEDKRVFVSYD-----GALYFSALE  632 (813)
Q Consensus       577 ~~~~~~g~~~~l~C~~~~~~p--~~~v~W~k~~~--~~~-~--------------~~~~~~~~~~~-----~~L~i~~~~  632 (813)
                      +..+.+|+.++|.|.+ .+.+  .+.+.|||...  ... +              ....|+.+..+     .+|+|.+++
T Consensus         9 ~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (257)
T 3bn9_D            9 GGLVKPGGSLRLSCAA-SGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLR   87 (257)
T ss_dssp             CEEECTTCEEEEEEEE-ESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESCC
T ss_pred             CEEEcCCCcEEEEEEe-ccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCCC
Confidence            4567889999999998 5555  57899998642  110 0              11356666542     369999999


Q ss_pred             ccCCeeEEEEEEeeecC--------cc--ccCceeeEEEccCC-CccccccCCCCCCCCCcCCCCCCeEEEEEEecCC-C
Q psy14896        633 QIDAGNYSCNVQSKVSD--------TG--RNGPFFPLKVFPHS-NFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGY-P  700 (813)
Q Consensus       633 ~~d~G~Y~C~a~n~~g~--------~~--~~~~~~~l~v~~~p-~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~-P  700 (813)
                      .+|+|.|.|.+.|..|.        ..  .......|.|...+ ..+.+..     ......+.+|+.++|.|.+.|. |
T Consensus        88 ~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~-----~~p~~~~~~g~~v~L~C~~~g~~P  162 (257)
T 3bn9_D           88 AEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFP-----LAPSSKSTSGGTAALGCLVKDYFP  162 (257)
T ss_dssp             GGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECC-----CCC-----------CCCEEEEEBS
T ss_pred             hhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEE-----ecCcccccCCCcEEEEEEEeeEEC
Confidence            99999999999987651        00  11122467777521 1111110     0101235689999999999986 8


Q ss_pred             CC-eEEEEeCCcccCCCc---eee-----ecceEEEECCCCCCCCEEEEEEEEcCCCce
Q psy14896        701 VP-SYNWTRRGSPLPRNA---YFE-----NFNRILTIPNVKVEDQGEYICRASNDRSAL  750 (813)
Q Consensus       701 ~p-~i~W~k~g~~l~~~~---~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~  750 (813)
                      .| .|+|+|+|..+....   ...     ...+.|.|.++..+| |.|+|.|.|..+..
T Consensus       163 ~pi~v~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~~  220 (257)
T 3bn9_D          163 EPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT  220 (257)
T ss_dssp             SCCEEEETTTTCCSSCEECCCEECTTSCEEEEEECCCC--------CEEEEEEEGGGTE
T ss_pred             CCcEEEEeeCCCcCCcEecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCCCc
Confidence            77 999999998753211   001     113468898888888 99999999975443

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.59  E-value=8.7e-15  Score=144.77  Aligned_cols=180  Identities=13%  Similarity=0.177  Sum_probs=111.3

Q ss_pred             CceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeeccc--cccccc-----ccccccCCCccEEee-----CCe
Q psy14896        190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDY--VQDRLV-----ANLIDPLSDKRFTLS-----GGN  257 (813)
Q Consensus       190 P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~--~l~~~~-----~~~~~~~~~~~~~~~-----~~~  257 (813)
                      +.++..|..+.+.+|     ++++|.|.+.+ |.+.|.|||...  .+....     ..........|+.+.     +.+
T Consensus         3 ~~v~~~p~~v~v~~G-----~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~s   76 (240)
T 3q5y_A            3 SGVVQSPRHIIKEKG-----GRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSE   76 (240)
T ss_dssp             CCCEEECSEEEEETT-----CCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEE
T ss_pred             cccccCcceeeecCC-----CcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEE
Confidence            345666777888777     77999999987 888999999321  110000     000011122344432     236


Q ss_pred             EEEcCCccccCCeeEEEEeec--CceeeEeeeeEEeeee------ecccccC-CCCceeecCCCeEEEecCCCCCCcc-e
Q psy14896        258 LIINDPRQVEDRGSYHCKASN--KFGSIISESVQLAFGF------IGEFNLK-RAPEIGNQNWGKAMFCDPPTNYPGV-N  327 (813)
Q Consensus       258 l~i~~~~~~~d~G~Y~C~a~n--~~g~~~s~~~~l~v~~------~~~~~~~-~~~~~~~~~~~~~l~C~~~~~~p~~-~  327 (813)
                      |.|.+. +.+|+|.|+|.|.+  .........+.|.|..      +|.+.+. +....+..|+.++|.|.+....|.+ .
T Consensus        77 L~I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~  155 (240)
T 3q5y_A           77 MNMSAL-ELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVE  155 (240)
T ss_dssp             EEECSC-CGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEE
T ss_pred             EEECcC-ChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeE
Confidence            888885 89999999999983  3222234455666652      2222222 2223445678899999975546766 8


Q ss_pred             EEEeeccccccccCC--ccEEEccCc------cEEEeeeeecC-CeeeEEEEeeeccc
Q psy14896        328 YYWARDYFPNFVEED--KRVFVSYDG------ALYFSALEQID-AGNYSCNVQSKVSD  376 (813)
Q Consensus       328 v~W~k~~~~~~~~~~--~~~~~~~~~------~L~i~~v~~~D-~G~Y~C~a~n~~g~  376 (813)
                      ++|+|||+++.....  .......++      .|.|..+..+| .|.|+|.|.|....
T Consensus       156 v~W~~~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~  213 (240)
T 3q5y_A          156 LSWWVNGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLS  213 (240)
T ss_dssp             EEEEETTEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             EEEEECCEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence            999999987532110  011222334      38888888888 67999999987653

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.59  E-value=2e-15  Score=150.50  Aligned_cols=164  Identities=12%  Similarity=0.134  Sum_probs=107.9

Q ss_pred             CCceeccCCCceEEeCCCCCCCccEEEEccCCCCC----cc-----------cCCC-eEEEeeCcc--EEEEeecccCCe
Q psy14896        576 APEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPN----FV-----------EEDK-RVFVSYDGA--LYFSALEQIDAG  637 (813)
Q Consensus       576 ~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~----~~-----------~~~~-~~~~~~~~~--L~i~~~~~~d~G  637 (813)
                      ....+.+|+.++|.|.+ .+.+.+.+.|||.....    ..           .... |+.+..++.  |+|.+++.+|+|
T Consensus         9 ~~v~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~L~I~~v~~~DsG   87 (253)
T 3to4_D            9 RWRLVPRGQAVNLRCIL-KNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQGR   87 (253)
T ss_dssp             SEEEEESSCCEEEEEEC-SCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSCCEEEEESCSSCE
T ss_pred             CeEEEeCCCcEEEEEEe-CCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCeEEEccCChhhCe
Confidence            34567889999999988 57788999999832110    00           0011 666655444  999999999999


Q ss_pred             eEEEEEEeeecC---ccccCceeeEEEccC------CCccccccCCCCCCCCCcCCCCCCeEEEEEEecC-CCCC-eEEE
Q psy14896        638 NYSCNVQSKVSD---TGRNGPFFPLKVFPH------SNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFG-YPVP-SYNW  706 (813)
Q Consensus       638 ~Y~C~a~n~~g~---~~~~~~~~~l~v~~~------p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g-~P~p-~i~W  706 (813)
                      .|.|.+.+..+.   .........|.|...      |.+...       ......+..|+.++|.|.+.| .|+| .|+|
T Consensus        88 ~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~-------~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W  160 (253)
T 3to4_D           88 TLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVF-------EPSEAEISHTQKATLVCLATGFYPDHVELSW  160 (253)
T ss_dssp             EEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEE-------ECCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred             EEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEe-------CCChhhcccCCceEEEEEEceEECCcEEEEE
Confidence            999999876431   111112235666532      211110       001112335789999999998 6666 8999


Q ss_pred             EeCCcccCCCceee---------------ecceEEEECCCCCCC-CEEEEEEEEcCC
Q psy14896        707 TRRGSPLPRNAYFE---------------NFNRILTIPNVKVED-QGEYICRASNDR  747 (813)
Q Consensus       707 ~k~g~~l~~~~~~~---------------~~~~~L~i~~v~~~d-~G~Y~C~a~N~~  747 (813)
                      +|||.++..+....               ...+.|.|.....+| .|.|+|.|.|..
T Consensus       161 ~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~  217 (253)
T 3to4_D          161 WVNGKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYG  217 (253)
T ss_dssp             EETTEEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECC
T ss_pred             EECCEECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCC
Confidence            99999886543221               112468888888888 779999999974

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.59  E-value=9.8e-15  Score=142.36  Aligned_cols=173  Identities=15%  Similarity=0.197  Sum_probs=108.3

Q ss_pred             CCceeecCCCccccccEEEEeeeccCC--CCeEEEeecc--cccccccc-------cccccCCCccEEee------CCeE
Q psy14896        196 PTDVVFDLSKRSILNDITLSCYAGGYP--NPSYEWFKED--YVQDRLVA-------NLIDPLSDKRFTLS------GGNL  258 (813)
Q Consensus       196 p~~~~v~~g~~~~g~~v~l~C~~~g~P--~p~v~W~k~g--~~l~~~~~-------~~~~~~~~~~~~~~------~~~l  258 (813)
                      |..+.+.+|     ++|+|.|.+.+.|  .+.|.|||+.  ..+.....       .........|+.+.      +.+|
T Consensus         7 p~~~~v~~G-----~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   81 (223)
T 1dee_B            7 SGGGVVQPG-----KSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYL   81 (223)
T ss_dssp             ECCCEECTT-----CCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEE
T ss_pred             CCCEEEcCC-----CcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEE
Confidence            345666566     7799999998865  4789999964  22110000       00111223466543      2368


Q ss_pred             EEcCCccccCCeeEEEEeecCce----e-eEeeeeEEeeee----ecccccCCCCceeecCCCeEEEecCCCCCCcc-eE
Q psy14896        259 IINDPRQVEDRGSYHCKASNKFG----S-IISESVQLAFGF----IGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGV-NY  328 (813)
Q Consensus       259 ~i~~~~~~~d~G~Y~C~a~n~~g----~-~~s~~~~l~v~~----~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~-~v  328 (813)
                      .|.+. +.+|+|.|.|.+.|..|    . .....+.|.|..    +|.+........+..|+.++|.|.+....|.+ ++
T Consensus        82 ~I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v  160 (223)
T 1dee_B           82 QMNSL-RAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITF  160 (223)
T ss_dssp             EECSC-CGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEE
T ss_pred             EECCC-CHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEE
Confidence            88885 89999999999998753    1 223445777753    22222212222346788889999976555876 99


Q ss_pred             EEee-ccccccccC-------CccEEEccCccEEEeeeee--cCCeeeEEEEeeeccc
Q psy14896        329 YWAR-DYFPNFVEE-------DKRVFVSYDGALYFSALEQ--IDAGNYSCNVQSKVSD  376 (813)
Q Consensus       329 ~W~k-~~~~~~~~~-------~~~~~~~~~~~L~i~~v~~--~D~G~Y~C~a~n~~g~  376 (813)
                      +|++ ||.++....       ...+.  ..+.|.|.....  +|.|.|+|.|.|..+.
T Consensus       161 ~W~~~~g~~l~~~~~~~~~~~~~~~~--~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~  216 (223)
T 1dee_B          161 SWKYKNNSDISSTRGFPSVLRGGKYA--ATSQVLLPSKDVAQGTNEHVVCKVQHPNGN  216 (223)
T ss_dssp             EEEETTSCBCSCEEECCCEEETTEEE--EEEEEEEECTTTTSTTCCEEEEEEECTTCC
T ss_pred             EeEccCCCccceeEECCccccCCeEE--EEEEEEEcHHHhccCCCCEEEEEEEeCCCC
Confidence            9999 888753200       01111  123577877765  7899999999998764

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.58  E-value=1.1e-14  Score=145.24  Aligned_cols=175  Identities=14%  Similarity=0.175  Sum_probs=109.4

Q ss_pred             eCCCceeecCCCccccccEEEEeeeccCC--CCeEEEeecc--cccccccc-------cccccCCCccEEee------CC
Q psy14896        194 KQPTDVVFDLSKRSILNDITLSCYAGGYP--NPSYEWFKED--YVQDRLVA-------NLIDPLSDKRFTLS------GG  256 (813)
Q Consensus       194 ~~p~~~~v~~g~~~~g~~v~l~C~~~g~P--~p~v~W~k~g--~~l~~~~~-------~~~~~~~~~~~~~~------~~  256 (813)
                      .+|....+.+|     ++|+|.|.+.+.|  .+.|.|||+.  ..+.....       .........|+.+.      +.
T Consensus        11 ~~p~~~~v~~G-----~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   85 (261)
T 2xqy_G           11 QQPGAELVKPG-----ASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTV   85 (261)
T ss_dssp             ECCSEEEECTT-----CCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEE
T ss_pred             ECCCCEEEcCC-----CCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEE
Confidence            34566667666     7799999999877  6899999984  22211000       00011123455543      24


Q ss_pred             eEEEcCCccccCCeeEEEEeecCcee--eEeeeeEEeeee----ecccccCCCCceeecCCCeEEEecCCCCCCcc-eEE
Q psy14896        257 NLIINDPRQVEDRGSYHCKASNKFGS--IISESVQLAFGF----IGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGV-NYY  329 (813)
Q Consensus       257 ~l~i~~~~~~~d~G~Y~C~a~n~~g~--~~s~~~~l~v~~----~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~-~v~  329 (813)
                      +|.|.+. +.+|+|.|.|.+.|..+.  .....+.|.|..    +|.+.+......+..|+.++|.|.+....|.+ .|+
T Consensus        86 sL~I~~v-~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~  164 (261)
T 2xqy_G           86 YIQLSSL-TSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLT  164 (261)
T ss_dssp             EEEECSC-CGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEE
T ss_pred             EEEEcCC-CcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEE
Confidence            6888885 899999999999986431  123445677654    22222222223356788889999975445776 999


Q ss_pred             EeeccccccccCCccEEE----ccCccEEEeeeeecCCeeeEEEEeeecc
Q psy14896        330 WARDYFPNFVEEDKRVFV----SYDGALYFSALEQIDAGNYSCNVQSKVS  375 (813)
Q Consensus       330 W~k~~~~~~~~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~n~~g  375 (813)
                      |++++.++.......+..    ...+.|.|..+..+| |.|+|.|.|...
T Consensus       165 W~k~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~  213 (261)
T 2xqy_G          165 WNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPAS  213 (261)
T ss_dssp             EGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGG
T ss_pred             EecCCCcCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCC
Confidence            999998643221111111    112468898888888 999999999654

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.58  E-value=6.5e-15  Score=146.23  Aligned_cols=178  Identities=17%  Similarity=0.202  Sum_probs=110.6

Q ss_pred             CceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecc--ccccccc----cc-ccccC-CCccEEeeC-----C
Q psy14896        190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKED--YVQDRLV----AN-LIDPL-SDKRFTLSG-----G  256 (813)
Q Consensus       190 P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g--~~l~~~~----~~-~~~~~-~~~~~~~~~-----~  256 (813)
                      +.++..|..+.+.+|     ++++|.| ..+.|.+.|.|||..  .......    .. ..... ...|+.+..     .
T Consensus         3 ~~v~~~p~~v~v~~G-----~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~   76 (245)
T 4ei6_B            3 PKVLQIPSHQIIDMG-----QMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYF   76 (245)
T ss_dssp             CCCEEECSEEEEETT-----CCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCE
T ss_pred             cceEeCCceEEecCC-----CCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceE
Confidence            456677788888777     7799999 667789999999931  1110000    00 00011 114555432     2


Q ss_pred             eEEEcCCccccCCeeEEEEeecCc---eeeEeeeeEEeeee------ecccccC-CCCceeecCCCeEEEecCCCCCCcc
Q psy14896        257 NLIINDPRQVEDRGSYHCKASNKF---GSIISESVQLAFGF------IGEFNLK-RAPEIGNQNWGKAMFCDPPTNYPGV  326 (813)
Q Consensus       257 ~l~i~~~~~~~d~G~Y~C~a~n~~---g~~~s~~~~l~v~~------~~~~~~~-~~~~~~~~~~~~~l~C~~~~~~p~~  326 (813)
                      +|.|.+. +.+|+|.|+|.|.+..   ....+..+.|.|..      +|.+.+. +....+..|+.++|.|.+....|.+
T Consensus        77 sL~I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~  155 (245)
T 4ei6_B           77 TLKIQPT-ALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDH  155 (245)
T ss_dssp             EEEECSC-CGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSC
T ss_pred             EEEECCC-CHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCC
Confidence            6888885 8999999999999532   22224456666653      2333222 2223455688899999975445655


Q ss_pred             -eEEEeeccccccccCCccEEEc--------cCc------cEEEeeeeecC-CeeeEEEEeeeccc
Q psy14896        327 -NYYWARDYFPNFVEEDKRVFVS--------YDG------ALYFSALEQID-AGNYSCNVQSKVSD  376 (813)
Q Consensus       327 -~v~W~k~~~~~~~~~~~~~~~~--------~~~------~L~i~~v~~~D-~G~Y~C~a~n~~g~  376 (813)
                       .++|+|||.++..  ..+....        .++      .|.|.....+| .|.|+|.|.|....
T Consensus       156 ~~v~W~~~g~~l~~--~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~  219 (245)
T 4ei6_B          156 VELSWWVNGKEVHS--GVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS  219 (245)
T ss_dssp             EEEEEEETTEEECT--TEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             eEEEEEECCEECCC--CcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCC
Confidence             8999999987432  1111110        133      37788887888 89999999987543

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.58  E-value=3.3e-15  Score=147.40  Aligned_cols=164  Identities=15%  Similarity=0.203  Sum_probs=106.0

Q ss_pred             CCceeccCCCceEEeCCCCCCCccEEEEccCCCCCc---c------------cCCCeEEEee----CccEEEEeecccCC
Q psy14896        576 APEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNF---V------------EEDKRVFVSY----DGALYFSALEQIDA  636 (813)
Q Consensus       576 ~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~---~------------~~~~~~~~~~----~~~L~i~~~~~~d~  636 (813)
                      ....+.+|+.++|.|.+ . .+.+.|.|+|++....   +            ....|+.+..    +.+|.|.+++.+|+
T Consensus         7 ~~v~v~~G~~v~L~C~~-~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~   84 (238)
T 1bec_A            7 RNKVAVTGGKVTLSCQQ-T-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATPSQT   84 (238)
T ss_dssp             SEEEEETTCCEEEEEEE-S-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCGGGC
T ss_pred             CeeEEeCCCcEEEEEEe-C-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCcccC
Confidence            34567889999999998 3 3578999999642100   0            0134555542    23699999999999


Q ss_pred             eeEEEEEEeeecC--ccccCceeeEEEccC------CCccccccCCCCCCCCCcCCCCCCeEEEEEEecCC-CCC-eEEE
Q psy14896        637 GNYSCNVQSKVSD--TGRNGPFFPLKVFPH------SNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGY-PVP-SYNW  706 (813)
Q Consensus       637 G~Y~C~a~n~~g~--~~~~~~~~~l~v~~~------p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~-P~p-~i~W  706 (813)
                      |.|.|.+.|..+.  .........|.|...      |.+...       .+....+.+|+.++|.|.+.|. |.| .|+|
T Consensus        85 G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~-------~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W  157 (238)
T 1bec_A           85 SVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLF-------EPSKAEIANKQKATLVCLARGFFPDHVELSW  157 (238)
T ss_dssp             EEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEE-------CCCSTTCSSSCSCSEEEEEEEEBSCCEEEEE
T ss_pred             EEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEE-------CCChHHcccCCceEEEEEEeeEeCCCcEEEE
Confidence            9999999987421  000112245777652      222111       1112346789999999999986 655 9999


Q ss_pred             EeCCcccCCCceee-----ecc------eEEEECCCCCCC-CEEEEEEEEcCCC
Q psy14896        707 TRRGSPLPRNAYFE-----NFN------RILTIPNVKVED-QGEYICRASNDRS  748 (813)
Q Consensus       707 ~k~g~~l~~~~~~~-----~~~------~~L~i~~v~~~d-~G~Y~C~a~N~~G  748 (813)
                      +|||.++..+....     ..+      +.|.|.....+| .|.|+|.|.|...
T Consensus       158 ~~~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l  211 (238)
T 1bec_A          158 WVNGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGL  211 (238)
T ss_dssp             EETTEEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCC
T ss_pred             EECCEECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCC
Confidence            99999886653221     112      235555444444 6799999999743

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.58  E-value=1.5e-15  Score=151.22  Aligned_cols=168  Identities=15%  Similarity=0.174  Sum_probs=109.0

Q ss_pred             CCCceeccCCCceEEeCCCCCCCccEEEEccCCCCC----cc-----------cCCCeEEEee----CccEEEEeecccC
Q psy14896        575 RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPN----FV-----------EEDKRVFVSY----DGALYFSALEQID  635 (813)
Q Consensus       575 ~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~----~~-----------~~~~~~~~~~----~~~L~i~~~~~~d  635 (813)
                      +....+.+|+.++|.|.+ . .+.+.+.|+|+....    ..           ....|+.+..    +.+|.|.+++.+|
T Consensus        10 p~~v~v~~G~~v~L~C~~-~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D   87 (252)
T 1oga_E           10 PKYLFRKEGQNVTLSCEQ-N-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNP   87 (252)
T ss_dssp             CSEEEEETTCCEEECCEE-C-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCC
T ss_pred             CCeEEEcCCCcEEEEEEe-C-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcCChhh
Confidence            344567899999999998 3 357899999864210    00           1235666653    3479999999999


Q ss_pred             CeeEEEEEEeeecCccccCceeeEEEcc------CCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCC-CC-CeEEEE
Q psy14896        636 AGNYSCNVQSKVSDTGRNGPFFPLKVFP------HSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGY-PV-PSYNWT  707 (813)
Q Consensus       636 ~G~Y~C~a~n~~g~~~~~~~~~~l~v~~------~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~-P~-p~i~W~  707 (813)
                      +|.|.|.+.|..+..........|.|..      +|.+...       .+....+.+|+.++|.|.+.|. |. +.|+|+
T Consensus        88 ~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~-------~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~  160 (252)
T 1oga_E           88 TAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVF-------EPSEAEISHTQKATLVCLATGFYPDHVELSWW  160 (252)
T ss_dssp             CEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEE-------CCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred             CEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEE-------CCChhhhccCCceEEEEEEeeEcCCCcEEEEE
Confidence            9999999998621101101123566653      2222110       0111234579999999999986 65 499999


Q ss_pred             eCCcccCCCceee---------ec------ceEEEECCCCCC-CCEEEEEEEEcCCCceE
Q psy14896        708 RRGSPLPRNAYFE---------NF------NRILTIPNVKVE-DQGEYICRASNDRSALE  751 (813)
Q Consensus       708 k~g~~l~~~~~~~---------~~------~~~L~i~~v~~~-d~G~Y~C~a~N~~G~~~  751 (813)
                      |||..+..+....         ..      .+.|+|.....+ |.|.|+|.|.|......
T Consensus       161 ~~g~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~~  220 (252)
T 1oga_E          161 VNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  220 (252)
T ss_dssp             ETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred             ECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCCC
Confidence            9999886553221         11      234888776654 67899999999865443

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.58  E-value=4.1e-14  Score=132.91  Aligned_cols=192  Identities=15%  Similarity=0.172  Sum_probs=120.6

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeec-cCC---CCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCcccc
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAG-GYP---NPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE  267 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~-g~P---~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~  267 (813)
                      +...|....+..|     +.++|+|.+. |.|   ...++|||||..+.          .      ..++|.+... ...
T Consensus         5 Vs~~P~~~~i~~G-----dsVTLTatVaGGkP~pspyTYqWyKDG~~Is----------G------aT~tLti~s~-t~s   62 (304)
T 3shs_A            5 VSIQSNKRCFLAG-----DGFTLTATVAGDEPLPSNLTYTWTKDDQPHE----------N------NTATLTVADA-TSE   62 (304)
T ss_dssp             EEEEESCSSBCTT-----CCEEEEEEEEESSSCCCCEEEEEEETTEECS----------C------CSSEEEESSC-CGG
T ss_pred             EEeCCCCccccCC-----CCEEEEEEecCCCCCCCCceEEEEECCcccc----------C------CcceEEeeec-ccc
Confidence            3444566666566     7799999985 667   34899999997541          1      1346666664 799


Q ss_pred             CCeeEEEEeecCceeeE-eeeeEEeeeeecccccC-CCCceeecCCCeEEEecC--CCCCC-----cceEEEeecccccc
Q psy14896        268 DRGSYHCKASNKFGSII-SESVQLAFGFIGEFNLK-RAPEIGNQNWGKAMFCDP--PTNYP-----GVNYYWARDYFPNF  338 (813)
Q Consensus       268 d~G~Y~C~a~n~~g~~~-s~~~~l~v~~~~~~~~~-~~~~~~~~~~~~~l~C~~--~~~~p-----~~~v~W~k~~~~~~  338 (813)
                      |+|.|+|++.|..|... +..+.+.....+.+.+. +.+.....+..+.|.+.+  .+|.|     ..++.|+||+..  
T Consensus        63 dSG~YqCvVTDa~Gcs~tSs~VtVT~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~--  140 (304)
T 3shs_A           63 NAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDV--  140 (304)
T ss_dssp             GCEEEEEEEEETTTCCEEECCCEEECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEE--
T ss_pred             CCeEEEEEEEECCCCeeeeeeEEEeccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeE--
Confidence            99999999999777542 33343333222222222 222233344556777766  56666     579999999864  


Q ss_pred             ccCCccEEEccCccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEE
Q psy14896        339 VEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVR  418 (813)
Q Consensus       339 ~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~  418 (813)
                              +.....|++...+..++|.|+|+++|..+. ...+..+.+.+..-+-..        ....+..+..|+.+.
T Consensus       141 --------IsgAq~lT~sS~TateaG~YtV~VTn~~~~-c~~s~~~~i~~~~~~v~~--------~~~~~~~~~~~~~~~  203 (304)
T 3shs_A          141 --------IDTTQDITIQEFTADKNGVYTVKVWGESED-SAASASTKIMLATMNVDQ--------DVVESKTVALGNEIS  203 (304)
T ss_dssp             --------EESSSEEEECSCCGGGCEEEEEEEESSSGG-GCEEEEEEEEECEEEEEE--------CCCSEEEEETTSCEE
T ss_pred             --------ccCccccceeeEEecCCeEEEEEEEcCCCC-cccccceEEEEEccccch--------hheEeehhhcCcEEE
Confidence                    223336888889999999999999988652 222333444443211100        112335678889988


Q ss_pred             EEEEEe
Q psy14896        419 LECVAF  424 (813)
Q Consensus       419 l~C~~~  424 (813)
                      |...++
T Consensus       204 ~~~~~~  209 (304)
T 3shs_A          204 LNYVVS  209 (304)
T ss_dssp             ECCEEE
T ss_pred             EEEEEe
Confidence            877664

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.58  E-value=4.7e-15  Score=123.05  Aligned_cols=90  Identities=29%  Similarity=0.448  Sum_probs=72.4

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEee--C--CeEEEcCCc
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS--G--GNLIINDPR  264 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~--~--~~l~i~~~~  264 (813)
                      ||.|...|.++.+.+|     +++.|.|.+.|.|.|.|+|+|||.+|..        ....++.+.  +  .+|.|.+. 
T Consensus         5 PP~i~~~p~~~~v~~G-----~~~~l~C~~~g~P~p~v~W~k~g~~i~~--------~~~~~~~~~~~~~~~~L~I~~~-   70 (100)
T 3knb_A            5 PPKIEALPSDISIDEG-----KVLTVACAFTGEPTPEVTWSCGGRKIHS--------QEQGRFHIENTDDLTTLIIMDV-   70 (100)
T ss_dssp             EEEECCCCSEEEEETT-----SEEEEEEEEEEESCCEEEEEETTEECCT--------TGGGTEEEEECSSEEEEEESSC-
T ss_pred             CCEEEeCCCcEEEeCC-----CeEEEEEEEEEecCCEEEEEECceEeee--------eccceeeeecccceEEEEEcCC-
Confidence            6899999999998887     6799999999999999999999987632        222344332  2  25777775 


Q ss_pred             cccCCeeEEEEeecCceeeEeeeeEEeee
Q psy14896        265 QVEDRGSYHCKASNKFGSIISESVQLAFG  293 (813)
Q Consensus       265 ~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~  293 (813)
                      +.+|+|.|+|.|+|..|.. +.++.|.|.
T Consensus        71 ~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~   98 (100)
T 3knb_A           71 QKQDGGLYTLSLGNEFGSD-SATVNIHIR   98 (100)
T ss_dssp             CGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             CccCCEEEEEEEEECCCEE-EEEEEEEEE
Confidence            8999999999999999987 667788774

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.57  E-value=4.6e-15  Score=145.36  Aligned_cols=175  Identities=15%  Similarity=0.134  Sum_probs=111.7

Q ss_pred             CCceeccCCCceEEeCCCCCC--CccEEEEccCCC--CCc--c-----------c-CCCeEEEeeC-----ccEEEEeec
Q psy14896        576 APEIGNQNWGKAMFCDPPTNY--PGVNYYWARDYF--PNF--V-----------E-EDKRVFVSYD-----GALYFSALE  632 (813)
Q Consensus       576 ~~~~~~~g~~~~l~C~~~~~~--p~~~v~W~k~~~--~~~--~-----------~-~~~~~~~~~~-----~~L~i~~~~  632 (813)
                      ....+.+|+.++|.|.+ .+.  +...+.|||...  ...  +           . ...|+.+..+     .+|+|.+++
T Consensus         9 ~~v~~~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   87 (230)
T 1ypz_F            9 ISISRPRDETAQISCKV-FIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLE   87 (230)
T ss_dssp             SEEEEETTSCEEEEEEE-CCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCC
T ss_pred             CEEEEeCCCcEEEEEEe-eccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEECcCC
Confidence            34567889999999998 443  567899998532  110  0           0 2456766543     269999999


Q ss_pred             ccCCeeEEEEEEeeecC-ccccCceeeEEEcc---------CCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCC-CC
Q psy14896        633 QIDAGNYSCNVQSKVSD-TGRNGPFFPLKVFP---------HSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGY-PV  701 (813)
Q Consensus       633 ~~d~G~Y~C~a~n~~g~-~~~~~~~~~l~v~~---------~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~-P~  701 (813)
                      .+|+|.|.|.+.|..+. .........|.|..         +|.....      . +....+..|+.++|.|.+.|. |.
T Consensus        88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~------~-p~~~~v~~g~~~~L~C~~~g~~P~  160 (230)
T 1ypz_F           88 EEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIF------L-PSVAETNLHKTGTYLCLLEAFFPD  160 (230)
T ss_dssp             GGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEE------C-CCHHHHHHHSCEEEEEEEEEESSC
T ss_pred             hhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEE------C-CCchhhccCCcceEEEEEeeecCC
Confidence            99999999999884100 00111224677752         1211110      0 111234568999999999986 75


Q ss_pred             -CeEEEEe-CCcccCCCce---eee-----cceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCC
Q psy14896        702 -PSYNWTR-RGSPLPRNAY---FEN-----FNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEP  762 (813)
Q Consensus       702 -p~i~W~k-~g~~l~~~~~---~~~-----~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P  762 (813)
                       +.|+|+| ||..|.....   ...     ..+.|+|..... | |.|+|.|.|..+...  +.+.|..||
T Consensus       161 ~~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~~~--~~~~~~fp~  227 (230)
T 1ypz_F          161 VIRVYWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNKGG--ADQAIFFPS  227 (230)
T ss_dssp             CCEEEEECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCTTT--SCEEEEECC
T ss_pred             CeEEEEEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCCCc--eeEeeecCC
Confidence             5999999 8887754321   111     135699988876 5 999999999876432  333444555

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.57  E-value=1.9e-14  Score=140.17  Aligned_cols=173  Identities=13%  Similarity=0.165  Sum_probs=106.4

Q ss_pred             CCceeecCCCccccccEEEEeeeccCC--CCeEEEeeccc--cccccc---------ccccccCCCccEEee-CC-----
Q psy14896        196 PTDVVFDLSKRSILNDITLSCYAGGYP--NPSYEWFKEDY--VQDRLV---------ANLIDPLSDKRFTLS-GG-----  256 (813)
Q Consensus       196 p~~~~v~~g~~~~g~~v~l~C~~~g~P--~p~v~W~k~g~--~l~~~~---------~~~~~~~~~~~~~~~-~~-----  256 (813)
                      |..+.+.+|     ++|+|.|.+.+.+  .+.|.|||...  .+....         ..........|+.+. ++     
T Consensus         7 p~~~~v~~G-----~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   81 (221)
T 3m8o_H            7 SGGGLVQPG-----GSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTA   81 (221)
T ss_dssp             ESCEEECTT-----CCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEE
T ss_pred             cCCEEEcCC-----CCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEE
Confidence            444566566     7799999998743  67999998542  111000         000111123455543 11     


Q ss_pred             eEEEcCCccccCCeeEEEEeecCce-eeEeeeeEEeeee----ecccccCCCCceeecCCCeEEEecCCCCCCc--ceEE
Q psy14896        257 NLIINDPRQVEDRGSYHCKASNKFG-SIISESVQLAFGF----IGEFNLKRAPEIGNQNWGKAMFCDPPTNYPG--VNYY  329 (813)
Q Consensus       257 ~l~i~~~~~~~d~G~Y~C~a~n~~g-~~~s~~~~l~v~~----~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~--~~v~  329 (813)
                      +|.|.+. +.+|+|.|.|.+.|... ......+.|.|..    .|.+........ .+|+.++|.|.+....|.  +.++
T Consensus        82 sL~I~~v-~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~-~~g~~v~L~C~~~~~~P~~~~~v~  159 (221)
T 3m8o_H           82 FLQMNSL-KSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCST-QPDGNVVIACLVQGFFPQEPLSVT  159 (221)
T ss_dssp             EEEECSC-CGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSC-CCTTEEEEEEEEEEEBSSCSEEEE
T ss_pred             EEEECCC-CHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCccc-ccCCCEEEEEEEEeeECCCCEEEE
Confidence            4888885 89999999999998631 2223445566542    122221112222 678889999997555776  5999


Q ss_pred             EeeccccccccCCccEEEccC------ccEEEeeeeecCCeeeEEEEeeecc
Q psy14896        330 WARDYFPNFVEEDKRVFVSYD------GALYFSALEQIDAGNYSCNVQSKVS  375 (813)
Q Consensus       330 W~k~~~~~~~~~~~~~~~~~~------~~L~i~~v~~~D~G~Y~C~a~n~~g  375 (813)
                      |+++|+++............+      +.|.|..+..+|+|.|+|.|.|..+
T Consensus       160 W~~~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~  211 (221)
T 3m8o_H          160 WSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTN  211 (221)
T ss_dssp             ESCCSTTCEEEECCCEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTS
T ss_pred             EEECCEECceEEcCceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCC
Confidence            999998763211111110122      2588999999999999999999764

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.56  E-value=6.5e-15  Score=146.16  Aligned_cols=172  Identities=17%  Similarity=0.196  Sum_probs=95.6

Q ss_pred             CCceeecCCCccccccEEEEeeeccCC--CCeEEEeeccc--ccccccc-------cccccCCCccEEee------CCeE
Q psy14896        196 PTDVVFDLSKRSILNDITLSCYAGGYP--NPSYEWFKEDY--VQDRLVA-------NLIDPLSDKRFTLS------GGNL  258 (813)
Q Consensus       196 p~~~~v~~g~~~~g~~v~l~C~~~g~P--~p~v~W~k~g~--~l~~~~~-------~~~~~~~~~~~~~~------~~~l  258 (813)
                      |....+.+|     ++|+|.|.+.+.|  .+.|.|||...  .+.....       .........|+.+.      +.+|
T Consensus         7 p~~~~v~~G-----~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   81 (257)
T 3bn9_D            7 SGGGLVKPG-----GSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYL   81 (257)
T ss_dssp             ECCEEECTT-----CEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEE
T ss_pred             cCCEEEcCC-----CcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEE
Confidence            344566566     7799999998876  67899999742  2110000       00011123455543      2368


Q ss_pred             EEcCCccccCCeeEEEEeecCce----------e--eEeeeeEEeeee----ecccccCCCCceeecCCCeEEEecCCCC
Q psy14896        259 IINDPRQVEDRGSYHCKASNKFG----------S--IISESVQLAFGF----IGEFNLKRAPEIGNQNWGKAMFCDPPTN  322 (813)
Q Consensus       259 ~i~~~~~~~d~G~Y~C~a~n~~g----------~--~~s~~~~l~v~~----~~~~~~~~~~~~~~~~~~~~l~C~~~~~  322 (813)
                      .|.+. +.+|+|.|.|.+.|..|          .  .....+.|.|..    +|.+.+......+..|..++|.|.+...
T Consensus        82 ~I~~v-~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~  160 (257)
T 3bn9_D           82 QMSSL-RAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDY  160 (257)
T ss_dssp             EEESC-CGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC-----------CCCEEEEE
T ss_pred             EECCC-ChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcccccCCCcEEEEEEEeeE
Confidence            88885 89999999999998765          1  123445677754    2333322222345678888999997655


Q ss_pred             CCcc-eEEEeeccccccccCCccEEEccCc------cEEEeeeeecCCeeeEEEEeeecc
Q psy14896        323 YPGV-NYYWARDYFPNFVEEDKRVFVSYDG------ALYFSALEQIDAGNYSCNVQSKVS  375 (813)
Q Consensus       323 ~p~~-~v~W~k~~~~~~~~~~~~~~~~~~~------~L~i~~v~~~D~G~Y~C~a~n~~g  375 (813)
                      .|.+ .|+|+|++.++.......+ ...++      .|.|.++..+| |.|+|.|.|...
T Consensus       161 ~P~pi~v~W~k~g~~~~~~~~~~~-~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~  218 (257)
T 3bn9_D          161 FPEPVTVSWNSGALTSGVHTFPAV-LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPS  218 (257)
T ss_dssp             BSSCCEEEETTTTCCSSCEECCCE-ECTTSCEEEEEECCCC--------CEEEEEEEGGG
T ss_pred             ECCCcEEEEeeCCCcCCcEecCCe-EcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCC
Confidence            5876 9999999986422211111 12333      47788888778 999999999654

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.56  E-value=1.4e-14  Score=146.01  Aligned_cols=178  Identities=16%  Similarity=0.156  Sum_probs=109.8

Q ss_pred             CceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeec--ccccccccc-----ccccc-CCCccEEee-----CC
Q psy14896        190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKE--DYVQDRLVA-----NLIDP-LSDKRFTLS-----GG  256 (813)
Q Consensus       190 P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~--g~~l~~~~~-----~~~~~-~~~~~~~~~-----~~  256 (813)
                      +.++..|..+.+.+|     ++++|.|.+. .|.+.|.|||.  +..+.....     ..... ....|+.+.     +.
T Consensus        27 ~~v~~~p~~v~v~~G-----~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~  100 (268)
T 3pl6_D           27 AGVSQTPSNKVTEKG-----KYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVS  100 (268)
T ss_dssp             SSCBCCCSEEEEETT-----CCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSE
T ss_pred             ceeEeCCCEEEecCC-----CCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEE
Confidence            456666777888777     7799999997 48889999993  322110000     00000 111455543     44


Q ss_pred             eEEEcCCccccCCeeEEEEeecC-ceeeEeeeeEEeeee------ecccccC-CCCceeecCCCeEEEecCCCCCCcc-e
Q psy14896        257 NLIINDPRQVEDRGSYHCKASNK-FGSIISESVQLAFGF------IGEFNLK-RAPEIGNQNWGKAMFCDPPTNYPGV-N  327 (813)
Q Consensus       257 ~l~i~~~~~~~d~G~Y~C~a~n~-~g~~~s~~~~l~v~~------~~~~~~~-~~~~~~~~~~~~~l~C~~~~~~p~~-~  327 (813)
                      +|.|.+. +.+|+|.|+|.|.|. ........+.|.|..      +|.+.+. .....+..|+.++|.|.+....|.+ .
T Consensus       101 sL~I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~  179 (268)
T 3pl6_D          101 TLKIQRT-ERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVE  179 (268)
T ss_dssp             EEEECSC-CGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEE
T ss_pred             EEEECCC-CcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeE
Confidence            6888885 899999999999974 222224445666654      2222222 2223345688899999975445544 9


Q ss_pred             EEEeeccccccccCCccEE--------EccCc------cEEEeeeeecC-CeeeEEEEeeeccc
Q psy14896        328 YYWARDYFPNFVEEDKRVF--------VSYDG------ALYFSALEQID-AGNYSCNVQSKVSD  376 (813)
Q Consensus       328 v~W~k~~~~~~~~~~~~~~--------~~~~~------~L~i~~v~~~D-~G~Y~C~a~n~~g~  376 (813)
                      ++|+|||+++..  ..+..        ...++      .|.|.....+| +|.|+|.|.|....
T Consensus       180 v~W~~~g~~l~~--~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~  241 (268)
T 3pl6_D          180 LSWWVNGKEVHS--GVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS  241 (268)
T ss_dssp             EEEEESSSEECT--TEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             EEEEECCEECCC--CeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCC
Confidence            999999987522  11111        00223      45666666666 99999999997653

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.56  E-value=5.1e-15  Score=121.58  Aligned_cols=79  Identities=24%  Similarity=0.335  Sum_probs=69.3

Q ss_pred             CcCCCCCCeEEEEEEecCCCCCeEEEEeCC--cccCCCceee--ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEE
Q psy14896        681 PEAPKAGDKVRLECVAFGYPVPSYNWTRRG--SPLPRNAYFE--NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI  756 (813)
Q Consensus       681 ~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g--~~l~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l  756 (813)
                      ...+.+|+.+.|.|.+.|.|.|.|+|+|+|  ..+.......  .....|.|.+++.+|+|.|+|.|.|..|..+.++.|
T Consensus        11 ~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   90 (93)
T 1wit_A           11 KIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEV   90 (93)
T ss_dssp             EEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             ceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEEEEecCCEEEEEECCCChhcCEEEEEEEEcCCCeEEEEEEE
Confidence            467899999999999999999999999999  8886654332  334789999999999999999999999999999999


Q ss_pred             EEE
Q psy14896        757 SIQ  759 (813)
Q Consensus       757 ~V~  759 (813)
                      .|+
T Consensus        91 ~V~   93 (93)
T 1wit_A           91 IVQ   93 (93)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            884

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.56  E-value=2.9e-14  Score=138.14  Aligned_cols=172  Identities=15%  Similarity=0.219  Sum_probs=104.3

Q ss_pred             CCceeecCCCccccccEEEEeeeccCC--CCeEEEeecc--cccccccc------cccccCCCccEEee---C---CeEE
Q psy14896        196 PTDVVFDLSKRSILNDITLSCYAGGYP--NPSYEWFKED--YVQDRLVA------NLIDPLSDKRFTLS---G---GNLI  259 (813)
Q Consensus       196 p~~~~v~~g~~~~g~~v~l~C~~~g~P--~p~v~W~k~g--~~l~~~~~------~~~~~~~~~~~~~~---~---~~l~  259 (813)
                      |..+.+.+|     ++++|.|.+.+.|  .+.|.|||+.  ..+.....      .........|+.+.   .   .+|.
T Consensus         7 p~~~~v~~G-----~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   81 (215)
T 1c5d_H            7 SGPGLVQPS-----QTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLK   81 (215)
T ss_dssp             ECCCEECTT-----CCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEE
T ss_pred             CCCeeecCC-----CcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEE
Confidence            455666666     7799999998865  5789999974  22110000      00011223465543   1   2688


Q ss_pred             EcCCccccCCeeEEEEeecCcee--eEeeeeEEeeee----ecccccCCCCceeecCCCeEEEecCCCCCCcc-eEEEee
Q psy14896        260 INDPRQVEDRGSYHCKASNKFGS--IISESVQLAFGF----IGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGV-NYYWAR  332 (813)
Q Consensus       260 i~~~~~~~d~G~Y~C~a~n~~g~--~~s~~~~l~v~~----~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~-~v~W~k  332 (813)
                      |.+. +.+|+|.|.|.+.|..+.  .....+.|.|..    +|.+.+......+..|+.++|.|.+.+..|.+ .++|++
T Consensus        82 I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~  160 (215)
T 1c5d_H           82 MNSL-QTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNS  160 (215)
T ss_dssp             ESSC-CGGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGG
T ss_pred             ECCC-CcccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEcc
Confidence            8885 899999999999986432  113345666653    22222222223456788899999976555877 999999


Q ss_pred             ccccccccCCccEEEccCccEE----EeeeeecCCeeeEEEEeeeccc
Q psy14896        333 DYFPNFVEEDKRVFVSYDGALY----FSALEQIDAGNYSCNVQSKVSD  376 (813)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~L~----i~~v~~~D~G~Y~C~a~n~~g~  376 (813)
                      ++..+.........  ..+.+.    +.....+| |.|+|.|.|..+.
T Consensus       161 ~g~~~~~~~~~~~~--~~g~~~~~s~L~~~~~~~-g~ytC~v~n~~~~  205 (215)
T 1c5d_H          161 GALSSDVHTFPAVL--QSGLYTLTSSVTSSTWPS-QTVTCNVAHPASS  205 (215)
T ss_dssp             GTTCCSCCBCCCEE--ETTEEEEEEEEEESSTTT-SCCEEEEEEGGGT
T ss_pred             CCccCceEecCccc--CCCCEEEEEEEecccCCC-CeEEEEEEeCCCC
Confidence            98764322222221  124322    22333345 9999999998874

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.56  E-value=7.3e-15  Score=124.68  Aligned_cols=100  Identities=21%  Similarity=0.343  Sum_probs=67.2

Q ss_pred             eeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCcee--eecceEEEECCCCCC
Q psy14896        657 FPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF--ENFNRILTIPNVKVE  734 (813)
Q Consensus       657 ~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~--~~~~~~L~i~~v~~~  734 (813)
                      +.|.+..+|.+..        ......+.+|++++|.|.+.|.|.|.++|+|+|..+....++  .....+|.|.+++.+
T Consensus         3 ~~v~~~~~P~~~~--------~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~   74 (108)
T 3kvq_A            3 LTVLERVAPTITG--------NLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKE   74 (108)
T ss_dssp             --------CCCBS--------CCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEETTTTEEEECSCCGG
T ss_pred             eeECccCCCceec--------CCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeCCCcEEEEeecCcc
Confidence            3455555665433        223467889999999999999999999999999998765433  344678999999999


Q ss_pred             CCEEEEEEEEcCCCceEEEEEEEEEcCCcc
Q psy14896        735 DQGEYICRASNDRSALESSVTISIQAEPNF  764 (813)
Q Consensus       735 d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~~  764 (813)
                      |+|.|+|.|.|..|..+..+.|.|..+|..
T Consensus        75 D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~  104 (108)
T 3kvq_A           75 DEGLYTCQACSVLGCAKVEAFFIIEGAQEK  104 (108)
T ss_dssp             GCEEEEEEEC----CEEEEEEEEEEC----
T ss_pred             cCEEEEEEEEeCCCceEEEEEEEEeCCCcc
Confidence            999999999999999999999999988764

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=1.2e-14  Score=125.37  Aligned_cols=82  Identities=21%  Similarity=0.398  Sum_probs=71.4

Q ss_pred             CcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCc-eee--ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEE
Q psy14896        681 PEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-YFE--NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS  757 (813)
Q Consensus       681 ~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~-~~~--~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~  757 (813)
                      ...+.+|++++|.|.+.|.|.|.|+|+|+|..+.... .+.  .....|+|.+++.+|+|.|+|.|.|..|..+..+.|.
T Consensus        33 ~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~  112 (118)
T 2e7c_A           33 TYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIR  112 (118)
T ss_dssp             CEEEESSSCEEEEEEEEEESCCEEEEEETTEECCCSSCEEEECSSEEEEEESSCCTTTCEEEEEEEECSSCEECCEEEEE
T ss_pred             CEEEECCCEEEEEEEEccCCCCEEEEEECCEECCCCcEEEEECCCeEEEEECCCChhcCEEEEEEEEeCCCeEEEEEEEE
Confidence            3678899999999999999999999999999987332 222  2245699999999999999999999999999999999


Q ss_pred             EEcCC
Q psy14896        758 IQAEP  762 (813)
Q Consensus       758 V~~~P  762 (813)
                      |.++|
T Consensus       113 V~~~P  117 (118)
T 2e7c_A          113 VVEKA  117 (118)
T ss_dssp             EECCC
T ss_pred             EEcCC
Confidence            99887

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.55  E-value=1.6e-14  Score=122.92  Aligned_cols=84  Identities=14%  Similarity=0.208  Sum_probs=67.1

Q ss_pred             CCCCCcCCCCCCeEEEEEEecCC---CCCeEEEEeCCcc-cC--CCceee----------ecceEEEECCCCCCCCEEEE
Q psy14896        677 PKTFPEAPKAGDKVRLECVAFGY---PVPSYNWTRRGSP-LP--RNAYFE----------NFNRILTIPNVKVEDQGEYI  740 (813)
Q Consensus       677 ~~~~~~~~~~G~~v~l~C~~~g~---P~p~i~W~k~g~~-l~--~~~~~~----------~~~~~L~i~~v~~~d~G~Y~  740 (813)
                      ..+.++.+.+|++++|.|.+.|.   |.|.|+|||++.. +.  .+.++.          .....|+|.+++.+|+|.|+
T Consensus        12 ~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DaG~Y~   91 (126)
T 2dav_A           12 EKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYR   91 (126)
T ss_dssp             SCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEE
T ss_pred             EcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccCEEEE
Confidence            34455778999999999999875   8999999997421 11  111111          12478999999999999999


Q ss_pred             EEEEcCCCceEEEEEEEEEc
Q psy14896        741 CRASNDRSALESSVTISIQA  760 (813)
Q Consensus       741 C~a~N~~G~~~~~~~l~V~~  760 (813)
                      |+|.|..|..+++++|+|+.
T Consensus        92 Cevsn~~g~~~~~~~L~V~~  111 (126)
T 2dav_A           92 CEVTYKDKFDSCSFDLEVHE  111 (126)
T ss_dssp             EEEECSSCEEEECCEEEEEC
T ss_pred             EEEEeCCCcEEEEEEEEEEe
Confidence            99999999999999999998

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.55  E-value=1.2e-14  Score=147.29  Aligned_cols=180  Identities=15%  Similarity=0.199  Sum_probs=112.0

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecc--ccccccc-------ccccccCCCccEEee-----
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKED--YVQDRLV-------ANLIDPLSDKRFTLS-----  254 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g--~~l~~~~-------~~~~~~~~~~~~~~~-----  254 (813)
                      .+.++..|..+.+.+|     ++++|.|.+.+.|.+.|.|||++  ..+....       ..........|+.+.     
T Consensus        24 ~~~v~~~p~~v~v~~G-----~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~   98 (279)
T 2wbj_D           24 GAVVSQHPSWVISKSG-----TSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLT   98 (279)
T ss_dssp             CCCEEEECSEEEEETT-----SCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSS
T ss_pred             cceEEeCCCeEEecCC-----CeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCC
Confidence            3567777888888777     67999999988899999999975  2111000       000111123455543     


Q ss_pred             CCeEEEcCCccccCCeeEEEEeecCce-----eeEeeeeEEeeee------ecccccC-CCCceeecCCCeEEEecCCCC
Q psy14896        255 GGNLIINDPRQVEDRGSYHCKASNKFG-----SIISESVQLAFGF------IGEFNLK-RAPEIGNQNWGKAMFCDPPTN  322 (813)
Q Consensus       255 ~~~l~i~~~~~~~d~G~Y~C~a~n~~g-----~~~s~~~~l~v~~------~~~~~~~-~~~~~~~~~~~~~l~C~~~~~  322 (813)
                      +.+|.|.+. +.+|+|.|+|.|.|..+     ......+.|.|..      +|.+.+. +....+.+|+.++|.|.+...
T Consensus        99 ~~sL~I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~  177 (279)
T 2wbj_D           99 LSTLTVTSA-HPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGF  177 (279)
T ss_dssp             EEEEEESSC-CGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEE
T ss_pred             EEEEEEccC-CccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeE
Confidence            236888885 89999999999998421     1112345566654      2222222 112234468889999997544


Q ss_pred             CCc-ceEEEeeccccccccCCccEE------E--ccCcc------EEEeeeeecC-CeeeEEEEeeeccc
Q psy14896        323 YPG-VNYYWARDYFPNFVEEDKRVF------V--SYDGA------LYFSALEQID-AGNYSCNVQSKVSD  376 (813)
Q Consensus       323 ~p~-~~v~W~k~~~~~~~~~~~~~~------~--~~~~~------L~i~~v~~~D-~G~Y~C~a~n~~g~  376 (813)
                      .|. ++|+|+|||+++...  ....      +  ..+++      |.|.....+| .|.|+|.|.|....
T Consensus       178 ~P~~~~v~W~k~g~~l~~~--~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~  245 (279)
T 2wbj_D          178 YPDHVELSWWVNGKEVHSG--VSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS  245 (279)
T ss_dssp             BSSCEEEEEEETTEECCTT--EEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBC
T ss_pred             cCCCcEEEEEECCEECCCC--cccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCC
Confidence            465 899999999875321  1110      0  12333      6666666654 67899999997653

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.55  E-value=6.3e-15  Score=122.79  Aligned_cols=80  Identities=21%  Similarity=0.312  Sum_probs=70.7

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceee-----ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE-----NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI  756 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l  756 (813)
                      ..+.+|++++|.|.+.|.|.|.|+|+|+|..+..+.++.     ....+|.|.+++.+|+|.|+|.|.|..|..+.++.|
T Consensus        15 ~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l   94 (99)
T 1g1c_A           15 QTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFL   94 (99)
T ss_dssp             EEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             eEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEECCCcEEEEEEE
Confidence            567899999999999999999999999999987665432     334589999999999999999999999999999999


Q ss_pred             EEEcC
Q psy14896        757 SIQAE  761 (813)
Q Consensus       757 ~V~~~  761 (813)
                      .|.++
T Consensus        95 ~V~~~   99 (99)
T 1g1c_A           95 LVQAK   99 (99)
T ss_dssp             EEECC
T ss_pred             EEecC
Confidence            99753

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=1.3e-14  Score=125.19  Aligned_cols=98  Identities=27%  Similarity=0.346  Sum_probs=80.6

Q ss_pred             CCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCC-cee-eecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEE
Q psy14896        680 FPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRN-AYF-ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS  757 (813)
Q Consensus       680 ~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~-~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~  757 (813)
                      ....+.+|++++|.|.+.|.|.|.|+|+|+|..+... .++ ...+++|.|.+++.+|+|.|+|.|.|..|..+..+.|.
T Consensus        16 ~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~   95 (118)
T 2eo9_A           16 VNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIE   95 (118)
T ss_dssp             CCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEETTEEEEESCCGGGCCCEEEEEECSSCEEEEECCEE
T ss_pred             CCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEccCCEEEEccCCcCCCEEEEEEEEcCCCcEEEEEEEE
Confidence            3366889999999999999999999999999988642 222 23456899999999999999999999999999999999


Q ss_pred             EEcCCcc--cccCCceeecCCC
Q psy14896        758 IQAEPNF--TIPLTDKHMDNQA  777 (813)
Q Consensus       758 V~~~P~~--~~~~~~~~~~~g~  777 (813)
                      |..+|.+  ...+.+..+.+|.
T Consensus        96 V~~~~~p~~~~~~~~~~~~~G~  117 (118)
T 2eo9_A           96 VQEFGVPVQPPRPTDPNLIPSA  117 (118)
T ss_dssp             EECCSCCCCCCCCCCCCCCCCC
T ss_pred             EEeCCCCccCCCCCCCccCCCC
Confidence            9988654  3445566666654

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.54  E-value=1.6e-14  Score=123.93  Aligned_cols=89  Identities=27%  Similarity=0.384  Sum_probs=75.2

Q ss_pred             CCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCC-ceee--e---cceEEEECCCCCCCCEEEEEEEEcCCCce
Q psy14896        677 PKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRN-AYFE--N---FNRILTIPNVKVEDQGEYICRASNDRSAL  750 (813)
Q Consensus       677 ~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~-~~~~--~---~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~  750 (813)
                      ..+....+.+|++++|.|.+.|.|.|.|+|+|+|..+... .++.  .   ...+|.|.+++.+|+|.|+|.|.|..|..
T Consensus        20 ~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   99 (116)
T 2kkq_A           20 YKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVT   99 (116)
T ss_dssp             SCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEEEETTEEE
T ss_pred             eCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEEEcCCCeE
Confidence            3444577899999999999999999999999999988753 3322  1   12389999999999999999999999999


Q ss_pred             EEEEEEEEEcCCccc
Q psy14896        751 ESSVTISIQAEPNFT  765 (813)
Q Consensus       751 ~~~~~l~V~~~P~~~  765 (813)
                      +..+.|.|..+|...
T Consensus       100 ~~~~~l~V~~~p~~~  114 (116)
T 2kkq_A          100 TCNTRLDVTARPNQT  114 (116)
T ss_dssp             EEEEEEEEECCSCCC
T ss_pred             EEEEEEEEeCCCCCC
Confidence            999999999988654

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.54  E-value=1e-14  Score=115.90  Aligned_cols=75  Identities=20%  Similarity=0.411  Sum_probs=63.9

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceee----ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS  757 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~  757 (813)
                      +.+.+|++++|.|.+.| |.|.|+|+|||.+|..+.++.    ....+|+|.+++.+|+|.|+|.|.|    ++.++.|.
T Consensus         6 v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~~~~a~l~   80 (84)
T 2lu7_A            6 VRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQ----DSRIFLVS   80 (84)
T ss_dssp             EEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTT----TCEEEEEE
T ss_pred             EEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEECC----EEEEEEEE
Confidence            56789999999999976 999999999999998776542    2346899999999999999999855    57888999


Q ss_pred             EEcC
Q psy14896        758 IQAE  761 (813)
Q Consensus       758 V~~~  761 (813)
                      |+.|
T Consensus        81 V~eP   84 (84)
T 2lu7_A           81 VEEP   84 (84)
T ss_dssp             ECCC
T ss_pred             EECC
Confidence            9765

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.54  E-value=7.6e-15  Score=144.22  Aligned_cols=122  Identities=15%  Similarity=0.215  Sum_probs=92.0

Q ss_pred             CCCCCeEEEEEEecCC---CCC-eEEEEeCCcccCCCce-----e----eecceEEEECCCCCCCCEEEEEEEEcCCCce
Q psy14896        684 PKAGDKVRLECVAFGY---PVP-SYNWTRRGSPLPRNAY-----F----ENFNRILTIPNVKVEDQGEYICRASNDRSAL  750 (813)
Q Consensus       684 ~~~G~~v~l~C~~~g~---P~p-~i~W~k~g~~l~~~~~-----~----~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~  750 (813)
                      +.+|++++|.|.+.|.   |.+ .|+|+|++..+.....     .    ......|.|.+++.+|+|.|+|.|.|..|..
T Consensus        29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~  108 (239)
T 1i1c_A           29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPA  108 (239)
T ss_dssp             TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSSS
T ss_pred             cccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCCC
Confidence            6799999999999987   876 9999999877653211     0    1123579999999999999999999998864


Q ss_pred             E--EEEEE--EEEcCCcccccCCceeecCCCeEEEEEEEccc-CC-ceEEEEECCEecccc
Q psy14896        751 E--SSVTI--SIQAEPNFTIPLTDKHMDNQADLTWTCEAFGV-PD-VTYSWFRNGELGHQM  805 (813)
Q Consensus       751 ~--~~~~l--~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~-p~-~~v~W~k~g~~l~~~  805 (813)
                      .  ..+.+  .+..+|.+...+.......|+.++|.|.+.|. |+ +.|.|+|||++|...
T Consensus       109 ~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~  169 (239)
T 1i1c_A          109 PIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENY  169 (239)
T ss_dssp             CEEEEECCCSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSE
T ss_pred             CcEEEEecCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCc
Confidence            3  34433  45577876544443333458899999999984 54 489999999999654

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.53  E-value=3.5e-14  Score=139.28  Aligned_cols=173  Identities=13%  Similarity=0.163  Sum_probs=103.2

Q ss_pred             CCceeecCCCccccccEEEEeeeccCC--CCeEEEeecc--cccccccc------cccccCCCccEEee----CC--eEE
Q psy14896        196 PTDVVFDLSKRSILNDITLSCYAGGYP--NPSYEWFKED--YVQDRLVA------NLIDPLSDKRFTLS----GG--NLI  259 (813)
Q Consensus       196 p~~~~v~~g~~~~g~~v~l~C~~~g~P--~p~v~W~k~g--~~l~~~~~------~~~~~~~~~~~~~~----~~--~l~  259 (813)
                      |....+.+|     ++++|.|.+.+.|  .+.+.|||..  ..+.....      .........|+.+.    ++  +|.
T Consensus         7 p~~~~v~~G-----~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   81 (232)
T 1dn0_B            7 WGAGLLKPS-----ETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLK   81 (232)
T ss_dssp             ECCCEECTT-----SCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEE
T ss_pred             CCCEEEeCC-----CcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEE
Confidence            344566565     7799999998765  6799999964  22110000      00111123466543    12  688


Q ss_pred             EcCCccccCCeeEEEEee--cCcee---eEeeeeEEeeeee----cccccCCCCceeecC-CCeEEEecCCCCCCcc-eE
Q psy14896        260 INDPRQVEDRGSYHCKAS--NKFGS---IISESVQLAFGFI----GEFNLKRAPEIGNQN-WGKAMFCDPPTNYPGV-NY  328 (813)
Q Consensus       260 i~~~~~~~d~G~Y~C~a~--n~~g~---~~s~~~~l~v~~~----~~~~~~~~~~~~~~~-~~~~l~C~~~~~~p~~-~v  328 (813)
                      |.+. +.+|+|.|.|.+.  +..+.   .....+.|.|...    |.+........+..| +.++|.|.+....|.+ .+
T Consensus        82 I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v  160 (232)
T 1dn0_B           82 LSSV-TAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITF  160 (232)
T ss_dssp             ECSC-CGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC------CCSEEEEEEEEEEBSSCCEE
T ss_pred             ECCC-CcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeEE
Confidence            8885 8999999999998  42121   1234456777542    222211112233467 7889999976556876 99


Q ss_pred             EEee-cccccccc-------CCccEEEccCccEEEeeeee--cCCeeeEEEEeeeccc
Q psy14896        329 YWAR-DYFPNFVE-------EDKRVFVSYDGALYFSALEQ--IDAGNYSCNVQSKVSD  376 (813)
Q Consensus       329 ~W~k-~~~~~~~~-------~~~~~~~~~~~~L~i~~v~~--~D~G~Y~C~a~n~~g~  376 (813)
                      +|++ ||..+...       ....+.  ..+.|.|.....  +|.|.|+|.|.|..+.
T Consensus       161 ~W~~~~g~~l~~~~~~~~~~~~~~~~--~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~  216 (232)
T 1dn0_B          161 SWKYKNNSDISSTRGFPSVLRGGKYA--ATSQVLLPSKDVMAGTDEHVVCKVQHPNGN  216 (232)
T ss_dssp             EEEETTSCEECCEEECCCEEETTEEE--EEEEEEECTTCC---CCCEEEEEEECTTCC
T ss_pred             EEEcCCCCceeeEEECCccccCCcEE--EEEEEEEcHHHhcccCCCeEEEEEEeCCCC
Confidence            9999 88764220       001111  123688888876  8899999999998764

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=1.3e-14  Score=120.44  Aligned_cols=82  Identities=18%  Similarity=0.353  Sum_probs=70.1

Q ss_pred             CCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceee----ecceEEEECCCCCCCCEEEEEEEEcCCCceEEE
Q psy14896        678 KTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----NFNRILTIPNVKVEDQGEYICRASNDRSALESS  753 (813)
Q Consensus       678 ~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~  753 (813)
                      .+....+.+|++++|.|.+  .|.|.|+|+|||.+|..+.++.    .....|.|.++..+|+|.|+|.|.|.  ..+.+
T Consensus        13 ~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~--~~~~~   88 (100)
T 2yuz_A           13 PLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAY--NVTLP   88 (100)
T ss_dssp             CCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESSS--CCCEE
T ss_pred             cCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcCC--CeeEE
Confidence            3445678999999999999  7999999999999998776542    22358999999999999999999998  67889


Q ss_pred             EEEEEEcCCc
Q psy14896        754 VTISIQAEPN  763 (813)
Q Consensus       754 ~~l~V~~~P~  763 (813)
                      +.|.|..+|.
T Consensus        89 a~L~V~~~P~   98 (100)
T 2yuz_A           89 AKVHVISGPS   98 (100)
T ss_dssp             EEEEEECCSC
T ss_pred             EEEEEeCCCC
Confidence            9999999885

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.53  E-value=2e-14  Score=118.45  Aligned_cols=78  Identities=19%  Similarity=0.277  Sum_probs=70.7

Q ss_pred             CCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896        680 FPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI  758 (813)
Q Consensus       680 ~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  758 (813)
                      ....+.+|++++|.|.+.|.| |.|+|+|+|..+..+.++...++.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus        17 ~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V   94 (95)
T 2ckn_A           17 ESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV   94 (95)
T ss_dssp             CCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEECSSEEEESSCCGGGSEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEeCCEEEECCCChHHCEEEEEEeccCCCcEEEEEEEEE
Confidence            346789999999999999998 799999999999877776666789999999999999999999999999999999887

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.53  E-value=2.7e-14  Score=151.02  Aligned_cols=165  Identities=11%  Similarity=0.171  Sum_probs=105.7

Q ss_pred             cccEEEEeeeccC-CCC---eEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceee-
Q psy14896        209 LNDITLSCYAGGY-PNP---SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI-  283 (813)
Q Consensus       209 g~~v~l~C~~~g~-P~p---~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~-  283 (813)
                      |++++|.|.+.|. |.|   .|+|||++.++............+..+. ...+|.|.. ++.+|+|.|+|.|.|..+.. 
T Consensus       183 g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~-~~s~L~I~~-~~~~D~g~Y~C~~~~~~~~~~  260 (376)
T 2aty_A          183 TLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFR-SVSELPIMH-QDWLNGKEFKCRVNSAAFPAP  260 (376)
T ss_pred             CCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEE-EEEEEEech-HhccCCCEEEEEEecCCCCCc
Confidence            4779999999987 433   7999999976532211111111222222 133577765 48999999999999886632 


Q ss_pred             EeeeeEE--eeeeecccccCCCCceeecCCCeEEEecCCCCCC-cceEEEeeccccccccCCccEEEccCcc------EE
Q psy14896        284 ISESVQL--AFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYP-GVNYYWARDYFPNFVEEDKRVFVSYDGA------LY  354 (813)
Q Consensus       284 ~s~~~~l--~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p-~~~v~W~k~~~~~~~~~~~~~~~~~~~~------L~  354 (813)
                      ....+.+  .+..+|.+.+...+.....++.++|.|.+.+.+| .++|+|+|||+++......+.....+++      |.
T Consensus       261 ~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgty~~~s~L~  340 (376)
T 2aty_A          261 IEKTISKTKGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTNESYFVYSKLN  340 (376)
T ss_pred             eEEEEcCCCCCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEeCCceECCCCCEEEEEEEE
Confidence            2223322  3444555655555555556788999999755455 4799999999875332223333345553      55


Q ss_pred             EeeeeecCCeeeEEEEeeecc
Q psy14896        355 FSALEQIDAGNYSCNVQSKVS  375 (813)
Q Consensus       355 i~~v~~~D~G~Y~C~a~n~~g  375 (813)
                      |.....+|.|.|+|.|.|...
T Consensus       341 i~~~~~~~~~~YtC~v~h~~l  361 (376)
T 2aty_A          341 VQKSNWEAGNTFTCSVLHEGL  361 (376)
T ss_pred             EcHHHhCCCCcEEEEEEeCCC
Confidence            666666679999999998654

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.52  E-value=1.4e-14  Score=121.72  Aligned_cols=81  Identities=16%  Similarity=0.250  Sum_probs=71.3

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeee----cceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFEN----FNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS  757 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~  757 (813)
                      ..+.+|++++|.|.+.|.|.|.|+|+|+|..+..+.++..    ...+|.|.+++.+|+|.|+|.|.|..|..+..+.|.
T Consensus        18 ~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   97 (103)
T 3qp3_A           18 HRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLD   97 (103)
T ss_dssp             EEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             eEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEEeCCCcEEEEEEEE
Confidence            5678999999999999999999999999999977654422    235799999999999999999999999999999999


Q ss_pred             EEcCC
Q psy14896        758 IQAEP  762 (813)
Q Consensus       758 V~~~P  762 (813)
                      |.+++
T Consensus        98 V~~~~  102 (103)
T 3qp3_A           98 VTGGD  102 (103)
T ss_dssp             EECC-
T ss_pred             EECCC
Confidence            98753

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.52  E-value=3.1e-14  Score=141.75  Aligned_cols=174  Identities=14%  Similarity=0.167  Sum_probs=104.3

Q ss_pred             CCceeecCCCccccccEEEEeeeccC--CCCeEEEeeccc--cccccc-------ccccccCCCccEEee------CCeE
Q psy14896        196 PTDVVFDLSKRSILNDITLSCYAGGY--PNPSYEWFKEDY--VQDRLV-------ANLIDPLSDKRFTLS------GGNL  258 (813)
Q Consensus       196 p~~~~v~~g~~~~g~~v~l~C~~~g~--P~p~v~W~k~g~--~l~~~~-------~~~~~~~~~~~~~~~------~~~l  258 (813)
                      |..+.+.+|     ++|+|.|.+.+.  +.+.+.|||...  ......       ..........|+.+.      +.+|
T Consensus         7 p~~v~v~~G-----~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   81 (253)
T 3liz_H            7 SGGGLVQPG-----GSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFL   81 (253)
T ss_dssp             ECCCEECTT-----CCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEE
T ss_pred             CCCEEECCC-----CcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEE
Confidence            345566565     779999999763  467899999642  111000       000111223455543      1238


Q ss_pred             EEcCCccccCCeeEEEEeecCc---eeeEeeeeEEeee----eecccccCCCCceeecCCCeEEEecCCCCCCcc-eEEE
Q psy14896        259 IINDPRQVEDRGSYHCKASNKF---GSIISESVQLAFG----FIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGV-NYYW  330 (813)
Q Consensus       259 ~i~~~~~~~d~G~Y~C~a~n~~---g~~~s~~~~l~v~----~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~-~v~W  330 (813)
                      .|.+. +.+|+|.|.|.+.|..   .......+.|.|.    ..|.+........+..|+.++|.|.+....|.+ .++|
T Consensus        82 ~I~~v-~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W  160 (253)
T 3liz_H           82 QMSSL-KSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTW  160 (253)
T ss_dssp             EECSC-CGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEE
T ss_pred             EECCC-ChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEE
Confidence            88885 8999999999999862   1112344566664    223333223333455688899999976557876 9999


Q ss_pred             eeccccccccCCccEEE----ccCccEEEeeeeecCCeeeEEEEeeeccc
Q psy14896        331 ARDYFPNFVEEDKRVFV----SYDGALYFSALEQIDAGNYSCNVQSKVSD  376 (813)
Q Consensus       331 ~k~~~~~~~~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~  376 (813)
                      ++++..+..........    ...+.|.|.....+| |.|+|.|.|..+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~  209 (253)
T 3liz_H          161 NSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASS  209 (253)
T ss_dssp             GGGTBCTTEEECCCEEETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGT
T ss_pred             EeCCeecceEeCCccccCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCC
Confidence            99997532221111111    112468899999999 9999999998764

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.52  E-value=1.9e-14  Score=120.05  Aligned_cols=82  Identities=21%  Similarity=0.351  Sum_probs=70.8

Q ss_pred             CcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCcee---e--ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEE
Q psy14896        681 PEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF---E--NFNRILTIPNVKVEDQGEYICRASNDRSALESSVT  755 (813)
Q Consensus       681 ~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~---~--~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~  755 (813)
                      ...+.+|++++|.|.+.|.|.|.|+|+|+|..+......   .  ....+|.|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus        14 ~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~   93 (100)
T 2kdg_A           14 NMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQ   93 (100)
T ss_dssp             CEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             CEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEEEE
Confidence            366889999999999999999999999999988765421   1  12248999999999999999999999999999999


Q ss_pred             EEEEcCC
Q psy14896        756 ISIQAEP  762 (813)
Q Consensus       756 l~V~~~P  762 (813)
                      |.|..+|
T Consensus        94 l~V~~~e  100 (100)
T 2kdg_A           94 LDVLAKE  100 (100)
T ss_dssp             EEEECCC
T ss_pred             EEEEecC
Confidence            9998654

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.52  E-value=4.3e-14  Score=139.32  Aligned_cols=176  Identities=14%  Similarity=0.227  Sum_probs=110.9

Q ss_pred             CCceeccCCCceEEeCCCCCCC----ccEEEEccCCCC--C-cc-------------------cCCCeEEEeeCc-----
Q psy14896        576 APEIGNQNWGKAMFCDPPTNYP----GVNYYWARDYFP--N-FV-------------------EEDKRVFVSYDG-----  624 (813)
Q Consensus       576 ~~~~~~~g~~~~l~C~~~~~~p----~~~v~W~k~~~~--~-~~-------------------~~~~~~~~~~~~-----  624 (813)
                      .+..+.+|+.++|.|.+ .+.+    ...+.|||....  . .+                   ....|+.+..+.     
T Consensus         8 ~~~~v~~G~~v~L~C~~-~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   86 (239)
T 3tv3_H            8 GPTLVEASETLSLTCAV-SGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLV   86 (239)
T ss_dssp             SCSEECTTSCEEEEEEE-ESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEE
T ss_pred             CCEEEcCCCCEEEEEEE-cCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEE
Confidence            34567889999999998 4444    458999984311  0 00                   112456555432     


Q ss_pred             cEEEEeecccCCeeEEEEEEeeecC----------ccccCceeeEEEccC-CCccccccCCCCCCCCCcCCCCCCeEEEE
Q psy14896        625 ALYFSALEQIDAGNYSCNVQSKVSD----------TGRNGPFFPLKVFPH-SNFQQLKFPNNFPKTFPEAPKAGDKVRLE  693 (813)
Q Consensus       625 ~L~i~~~~~~d~G~Y~C~a~n~~g~----------~~~~~~~~~l~v~~~-p~~~~~~~p~~~~~~~~~~~~~G~~v~l~  693 (813)
                      +|.|.+++.+|+|.|.|.+.+..+.          .........|.|... +..+.+..     ......+..|+.++|.
T Consensus        87 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~-----~~~~~~~~~g~~v~l~  161 (239)
T 3tv3_H           87 FLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFP-----LAPSSKSTSGGTAALG  161 (239)
T ss_dssp             EEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEE-----ECCCCCC--TTEEEEE
T ss_pred             EEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEE-----ECCChhhccCCcEEEE
Confidence            3999999999999999999886421          001112235666522 11111110     0111345679999999


Q ss_pred             EEecC-CCCC-eEEEEeCCcccCCCc--------eeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896        694 CVAFG-YPVP-SYNWTRRGSPLPRNA--------YFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI  758 (813)
Q Consensus       694 C~~~g-~P~p-~i~W~k~g~~l~~~~--------~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  758 (813)
                      |.+.| .|++ .++|+++|..+....        ......+.|+|.....+| |.|+|.|.|..+.......|.+
T Consensus       162 C~~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~  235 (239)
T 3tv3_H          162 CLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP  235 (239)
T ss_dssp             EEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred             EEEeeEeCCCeEEEEEECCccCceEecCceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceEEEEecc
Confidence            99998 4544 589999997542111        011113579999998899 9999999999887776666654

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.52  E-value=2.9e-14  Score=123.05  Aligned_cols=96  Identities=21%  Similarity=0.299  Sum_probs=75.7

Q ss_pred             eEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeee--------cceEEEEC
Q psy14896        658 PLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFEN--------FNRILTIP  729 (813)
Q Consensus       658 ~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~--------~~~~L~i~  729 (813)
                      .|.|..+|.+....           .....+...|.|.+.|.|.|.++|+|+|..+..+.+...        ..+.|.|.
T Consensus         2 ~L~V~~pP~i~~~~-----------~~~~~~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~   70 (118)
T 1wwc_A            2 ALTVYYPPRVVSLE-----------EPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFN   70 (118)
T ss_dssp             --CCCCCCCCCCCC-----------CCCCCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEE
T ss_pred             EEEEecCCceeccC-----------CCeeccceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEeccCccccEEEEEC
Confidence            46677777654321           112236788999999999999999999999987653321        35689999


Q ss_pred             CCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCCcc
Q psy14896        730 NVKVEDQGEYICRASNDRSALESSVTISIQAEPNF  764 (813)
Q Consensus       730 ~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~~  764 (813)
                      +++.+|+|.|+|.|.|..|..++++.|.|..+|..
T Consensus        71 ~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~  105 (118)
T 1wwc_A           71 KPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFP  105 (118)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEEEEEEECCSCCCCC
T ss_pred             CCChhcCEEEEEEEECCCCeEeeEEEEEEccCCCc
Confidence            99999999999999999999999999999988854

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.52  E-value=9.9e-14  Score=118.81  Aligned_cols=94  Identities=22%  Similarity=0.285  Sum_probs=76.0

Q ss_pred             CCCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEee----CCeEEEcCC
Q psy14896        188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS----GGNLIINDP  263 (813)
Q Consensus       188 ~~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~----~~~l~i~~~  263 (813)
                      .||.|+..|.++.+.+|     ++++|.|.+.|.|.|.|.|||+|..+.          .+.++.+.    .++|.|.+.
T Consensus         6 ~pp~i~~~~~~~~v~~G-----~~v~l~C~~~g~p~p~i~W~k~~~~~~----------~~~~~~~~~~~~~~~L~I~~v   70 (114)
T 2cqv_A            6 SGPQIIQFPEDQKVRAG-----ESVELFGKVTGTQPITCTWMKFRKQIQ----------ESEHMKVENSENGSKLTILAA   70 (114)
T ss_dssp             CCCEESCCCCSEEEETT-----CCEEEEEEEESSSSCEEEEEESSSBCC----------CSSSEEEEECSSEEEEEETTC
T ss_pred             CCCEEEeCCCCeEEeCC-----CeEEEEEEEEcCCCCEEEEEECCEECc----------CCCCEEEEEcCCEEEEEECCC
Confidence            46889988999998887     669999999999999999999998763          22344443    346788775


Q ss_pred             ccccCCeeEEEEeecCceeeEeeeeEEeeeeeccc
Q psy14896        264 RQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEF  298 (813)
Q Consensus       264 ~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~  298 (813)
                       +.+|+|.|+|.|.|..|.. +..+.|.|...|..
T Consensus        71 -~~~D~G~Y~C~a~N~~g~~-~~~~~l~V~~~p~~  103 (114)
T 2cqv_A           71 -RQEHCGCYTLLVENKLGSR-QAQVNLTVVDKPDP  103 (114)
T ss_dssp             -CTTTCEEEEEEEECSSCEE-ECCEEEEEECSCSC
T ss_pred             -ChhcCEEEEEEEEECCCcE-EEEEEEEEECCCCC
Confidence             8999999999999999977 66888888766543

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=2.9e-14  Score=121.35  Aligned_cols=86  Identities=19%  Similarity=0.270  Sum_probs=73.1

Q ss_pred             CCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCC-ceeee-----cceEEEECCCCCCCCEEEEEEEEcCCCceEEE
Q psy14896        680 FPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRN-AYFEN-----FNRILTIPNVKVEDQGEYICRASNDRSALESS  753 (813)
Q Consensus       680 ~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~-~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~  753 (813)
                      ....+.+|++++|.|.+.|.|.|.|+|+|+|..+... .++..     ....|.|.+++.+|+|.|+|.|.|..|..+..
T Consensus        16 ~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~   95 (110)
T 2dm2_A           16 KHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCT   95 (110)
T ss_dssp             CCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEEECTTCCEEEC
T ss_pred             cCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEEEECCCeEEEE
Confidence            3467899999999999999999999999999998753 33221     12379999999999999999999999999999


Q ss_pred             EEEEEEcCCccc
Q psy14896        754 VTISIQAEPNFT  765 (813)
Q Consensus       754 ~~l~V~~~P~~~  765 (813)
                      +.|.|..+|..+
T Consensus        96 ~~l~V~~~~~~P  107 (110)
T 2dm2_A           96 GRLMVQAVNSGP  107 (110)
T ss_dssp             CCEEEECCSCCS
T ss_pred             EEEEEECCCCCC
Confidence            999999887543

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.51  E-value=1.5e-14  Score=131.53  Aligned_cols=88  Identities=23%  Similarity=0.374  Sum_probs=72.5

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeee-----cceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFEN-----FNRILTIPNVKVEDQGEYICRASNDRSALESSVTI  756 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l  756 (813)
                      ..+.+|++++|.|.+.|.|.|.|+|+|+|..+..+.++..     ....|.|.+++.+|+|.|+|.|.|..|..+..+.|
T Consensus        51 ~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l  130 (154)
T 1fhg_A           51 MEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAEL  130 (154)
T ss_dssp             EEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEEEEEEECCCeEEEEEEE
Confidence            6789999999999999999999999999999987665432     24589999999999999999999999999999999


Q ss_pred             EEEcCCcccccCC
Q psy14896        757 SIQAEPNFTIPLT  769 (813)
Q Consensus       757 ~V~~~P~~~~~~~  769 (813)
                      .|..+|.+...+.
T Consensus       131 ~V~~~p~~~~~~~  143 (154)
T 1fhg_A          131 LVETMGKEGEGEG  143 (154)
T ss_dssp             EEECC--------
T ss_pred             EEeCcCcCCCCCC
Confidence            9999998765443

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=1.5e-14  Score=120.74  Aligned_cols=81  Identities=22%  Similarity=0.440  Sum_probs=70.9

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCC-cee-eecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRN-AYF-ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ  759 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~-~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  759 (813)
                      ..+.+|++++|.|.+.|.|.|.|+|+|+|..+... .++ ...+++|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus        18 ~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~   97 (100)
T 2edj_A           18 QTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVT   97 (100)
T ss_dssp             EEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEECTTCCEEEESCCTTTCCEEEEEEECSSCCCBCCEEEEEE
T ss_pred             EEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEcCCCEEEEccCCcccCEEEEEEEEcCCCCEEEEEEEEEe
Confidence            56789999999999999999999999999988732 222 2345689999999999999999999999999999999999


Q ss_pred             cCC
Q psy14896        760 AEP  762 (813)
Q Consensus       760 ~~P  762 (813)
                      ++|
T Consensus        98 ~~~  100 (100)
T 2edj_A           98 ESG  100 (100)
T ss_dssp             SCC
T ss_pred             cCC
Confidence            875

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.51  E-value=1.1e-15  Score=148.02  Aligned_cols=159  Identities=19%  Similarity=0.207  Sum_probs=100.5

Q ss_pred             CCCceeccCCCceEEeCCCCCCCc---cEEEEccCCCCCccc--------CCCeEEEeeCccEEEEeecccCCeeEEEEE
Q psy14896        575 RAPEIGNQNWGKAMFCDPPTNYPG---VNYYWARDYFPNFVE--------EDKRVFVSYDGALYFSALEQIDAGNYSCNV  643 (813)
Q Consensus       575 ~~~~~~~~g~~~~l~C~~~~~~p~---~~v~W~k~~~~~~~~--------~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  643 (813)
                      +....+.+|+.++|.|.+ .+.++   +.|+| ++ .+....        .+.++  ...++|.|.++..+|+|.|+|.|
T Consensus        11 P~~~~v~~G~~v~L~C~~-~g~~p~~~~~v~W-~~-~~~~~~~~~~~~~~~~g~~--~~~~~L~I~~~~~~D~g~Y~C~~   85 (214)
T 1ow0_A           11 PALEDLLLGSEANLTCTL-TGLRDASGVTFTW-TP-SSGKSAVQGPPERDLCGCY--SVSSVLPGCAEPWNHGKTFTCTA   85 (214)
T ss_dssp             CCHHHHHHCSSCCCEEEE-TTCCSCCCCCCCB-SS-CSSCCCEECCCCCCSTTCC--CEEEECTTTHHHHHHTCEEEEEE
T ss_pred             cChHHhccCCCcEEEEEE-eeeECCCCeEEEE-cC-CCCCCcccCCceECCCCcE--EEEEEEEEeHHHcCCCCeEEEEE
Confidence            344556789999999999 45543   68999 44 332110        01111  12345888999999999999999


Q ss_pred             EeeecCccccCceeeEE---EccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCC-CC-CeEEEEeCCcccCCCce
Q psy14896        644 QSKVSDTGRNGPFFPLK---VFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGY-PV-PSYNWTRRGSPLPRNAY  718 (813)
Q Consensus       644 ~n~~g~~~~~~~~~~l~---v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~-P~-p~i~W~k~g~~l~~~~~  718 (813)
                      .|..+....   ...+.   +..+|.+...  +     .....+..|+.++|.|.+.|. |+ +.|+|+|||..|..+..
T Consensus        86 ~~~~~~~~~---~~~i~~~~~~~~P~v~~~--~-----~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~  155 (214)
T 1ow0_A           86 AYPESKTPL---TATLSKSGNTFRPEVHLL--P-----PPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKY  155 (214)
T ss_dssp             CCSSCSSCE---EEEEECCSSCCCCEEEEE--C-----CCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGS
T ss_pred             ecCCCCCce---eEeeccCCCCCCCEEEec--C-----CCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCce
Confidence            998754211   12222   2233432211  1     111346789999999999986 53 49999999998865521


Q ss_pred             -----eee---cce------EEEECCCCCCCCEEEEEEEEcCCC
Q psy14896        719 -----FEN---FNR------ILTIPNVKVEDQGEYICRASNDRS  748 (813)
Q Consensus       719 -----~~~---~~~------~L~i~~v~~~d~G~Y~C~a~N~~G  748 (813)
                           ...   .++      .|.|.....+|.|.|+|.|.|..-
T Consensus       156 ~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l  199 (214)
T 1ow0_A          156 LTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEAL  199 (214)
T ss_dssp             EECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTC
T ss_pred             eecCCcccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCC
Confidence                 111   233      345544444568999999999753

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=3.7e-14  Score=117.80  Aligned_cols=81  Identities=19%  Similarity=0.276  Sum_probs=72.5

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcC
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAE  761 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~  761 (813)
                      ..+.+|+.++|.|.+.|.| |.|+|+|+|..+....++......|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..+
T Consensus        13 ~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~   91 (99)
T 2cr3_A           13 FLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDA   91 (99)
T ss_dssp             CCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCSSEEECSSEEEETTCCTTTCEEEEEEEEETTEEEEEEEEECBCSC
T ss_pred             eEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCCCcEEEECCEEEEccCCHHHCEEEEEEEEeCCceEEEEEEEEEecC
Confidence            5688999999999999987 799999999999777666555789999999999999999999999999999999999876


Q ss_pred             Cc
Q psy14896        762 PN  763 (813)
Q Consensus       762 P~  763 (813)
                      |.
T Consensus        92 ~~   93 (99)
T 2cr3_A           92 LP   93 (99)
T ss_dssp             CS
T ss_pred             CC
Confidence            53

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.50  E-value=2.3e-14  Score=140.75  Aligned_cols=176  Identities=15%  Similarity=0.279  Sum_probs=107.1

Q ss_pred             CceeccCCCceEEeCCCCCC----CccEEEEccCCCC---Ccc----------------cCCCeEEEeeCc-----cEEE
Q psy14896        577 PEIGNQNWGKAMFCDPPTNY----PGVNYYWARDYFP---NFV----------------EEDKRVFVSYDG-----ALYF  628 (813)
Q Consensus       577 ~~~~~~g~~~~l~C~~~~~~----p~~~v~W~k~~~~---~~~----------------~~~~~~~~~~~~-----~L~i  628 (813)
                      +..+.+|+.++|.|.+ .+.    +...|.|||....   ..+                ....|+.+..+.     +|+|
T Consensus         9 ~~~v~~G~~v~L~C~~-~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   87 (232)
T 3qhz_H            9 PALVKPTQTLTLTCSF-SGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLTM   87 (232)
T ss_dssp             CSEECTTSCEEEEEEE-ESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEEE
T ss_pred             CEEECCCCcEEEEEEE-eCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEEE
Confidence            3567889999999998 332    2334599984211   000                112466665433     4999


Q ss_pred             EeecccCCeeEEEEEEeeecCc-----cccCceeeEEEccC-CCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCC-
Q psy14896        629 SALEQIDAGNYSCNVQSKVSDT-----GRNGPFFPLKVFPH-SNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPV-  701 (813)
Q Consensus       629 ~~~~~~d~G~Y~C~a~n~~g~~-----~~~~~~~~l~v~~~-p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~-  701 (813)
                      .+++.+|+|.|.|.+.+..+..     ........|.|... +..+.+..     ......+..|+.++|.|.+.|.++ 
T Consensus        88 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~-----~~~~~~~~~g~~v~L~C~~~~~~P~  162 (232)
T 3qhz_H           88 TNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFP-----LAPSSKSTSGGTAALGCLVKDYFPE  162 (232)
T ss_dssp             CSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEE-----ECC-------CEEEEEEEEEEEBSS
T ss_pred             CcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEE-----ecccccccCCCcEEEEEEEeeEeCC
Confidence            9999999999999998763110     11112245666521 11111110     011134567999999999998554 


Q ss_pred             -CeEEEEeCCcccCCCc--------eeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896        702 -PSYNWTRRGSPLPRNA--------YFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ  759 (813)
Q Consensus       702 -p~i~W~k~g~~l~~~~--------~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  759 (813)
                       ..++|+|+|..+....        ......+.|+|.....+| |.|+|.|.|..+.......|.+.
T Consensus       163 ~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l~~~  228 (232)
T 3qhz_H          163 PVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPK  228 (232)
T ss_dssp             CCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCCC
T ss_pred             CeEEEEEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEeCCC
Confidence             3688999997542111        111113579999999999 99999999998887777776553

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.49  E-value=9.9e-14  Score=114.88  Aligned_cols=80  Identities=20%  Similarity=0.317  Sum_probs=70.2

Q ss_pred             CcCCCCCCeEEEEEEecCC-CCCeEEEEeCCcccCCCceeee----cceEEEECCCCCCCCEEEEEEEEcCCCceEEEEE
Q psy14896        681 PEAPKAGDKVRLECVAFGY-PVPSYNWTRRGSPLPRNAYFEN----FNRILTIPNVKVEDQGEYICRASNDRSALESSVT  755 (813)
Q Consensus       681 ~~~~~~G~~v~l~C~~~g~-P~p~i~W~k~g~~l~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~  755 (813)
                      ...+.+|++++|.|.+.|. |.|.|+|+|++..+..+.++..    ....|.|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus        10 ~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~   89 (97)
T 2bk8_A           10 HAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAE   89 (97)
T ss_dssp             CEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             CEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCCeEeEEEE
Confidence            3678999999999999997 9999999999999877665432    2348999999999999999999999999999999


Q ss_pred             EEEEc
Q psy14896        756 ISIQA  760 (813)
Q Consensus       756 l~V~~  760 (813)
                      |.|.+
T Consensus        90 l~V~~   94 (97)
T 2bk8_A           90 LFVKG   94 (97)
T ss_dssp             EEETT
T ss_pred             EEEEe
Confidence            99874

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.49  E-value=4.4e-15  Score=143.71  Aligned_cols=176  Identities=13%  Similarity=0.114  Sum_probs=104.2

Q ss_pred             ceeeCCCceeecCCCccccccEEEEeeeccCCC---CeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCcccc
Q psy14896        191 YFIKQPTDVVFDLSKRSILNDITLSCYAGGYPN---PSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE  267 (813)
Q Consensus       191 ~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~---p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~  267 (813)
                      .++..|....+.+|     ++++|.|.+.|.+.   +.|.|  ++..+............+.++. ...+|.|.+ ++.+
T Consensus         6 v~~~~P~~~~v~~G-----~~v~L~C~~~g~~p~~~~~v~W--~~~~~~~~~~~~~~~~~~g~~~-~~~~L~I~~-~~~~   76 (214)
T 1ow0_A            6 LSLHRPALEDLLLG-----SEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYS-VSSVLPGCA-EPWN   76 (214)
T ss_dssp             CEEECCCHHHHHHC-----SSCCCEEEETTCCSCCCCCCCB--SSCSSCCCEECCCCCCSTTCCC-EEEECTTTH-HHHH
T ss_pred             EEEECcChHHhccC-----CCcEEEEEEeeeECCCCeEEEE--cCCCCCCcccCCceECCCCcEE-EEEEEEEeH-HHcC
Confidence            34455777776666     77999999998754   69999  4444322110000001111221 233566644 4789


Q ss_pred             CCeeEEEEeecCceee-EeeeeE-EeeeeecccccCCC-CceeecCCCeEEEecCCCCCCc-ceEEEeeccccccccC--
Q psy14896        268 DRGSYHCKASNKFGSI-ISESVQ-LAFGFIGEFNLKRA-PEIGNQNWGKAMFCDPPTNYPG-VNYYWARDYFPNFVEE--  341 (813)
Q Consensus       268 d~G~Y~C~a~n~~g~~-~s~~~~-l~v~~~~~~~~~~~-~~~~~~~~~~~l~C~~~~~~p~-~~v~W~k~~~~~~~~~--  341 (813)
                      |+|.|+|.|.|..+.. ....+. +.+..+|.+.+... ...+..|+.++|.|.+.+.+|. ++|+|+|||.++....  
T Consensus        77 D~g~Y~C~~~~~~~~~~~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~  156 (214)
T 1ow0_A           77 HGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYL  156 (214)
T ss_dssp             HTCEEEEEECCSSCSSCEEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSE
T ss_pred             CCCeEEEEEecCCCCCceeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCcee
Confidence            9999999999977642 122222 12334444443322 2234567778999997554565 6999999998753321  


Q ss_pred             CccEEEc---cCccEEEee---eee---cCCeeeEEEEeeecc
Q psy14896        342 DKRVFVS---YDGALYFSA---LEQ---IDAGNYSCNVQSKVS  375 (813)
Q Consensus       342 ~~~~~~~---~~~~L~i~~---v~~---~D~G~Y~C~a~n~~g  375 (813)
                      .......   .+|++.+..   +..   +|.|.|+|.|.|...
T Consensus       157 ~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l  199 (214)
T 1ow0_A          157 TWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEAL  199 (214)
T ss_dssp             ECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTC
T ss_pred             ecCCcccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCC
Confidence            1123444   566655543   333   458999999998764

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=6.6e-14  Score=116.49  Aligned_cols=78  Identities=28%  Similarity=0.444  Sum_probs=69.2

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCcee-eecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ  759 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  759 (813)
                      ..+.+|++++|.|.+.|.|.|.|+|+|+|..+...... ......|.|.+++.+|+|.|+|.|.|..|..+.++.|.|+
T Consensus        21 ~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~   99 (99)
T 2yr3_A           21 CAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTVH   99 (99)
T ss_dssp             EEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCEEETTEEEEEECSCCTTCCBCEEEEEECSSCEEEEECCEEEC
T ss_pred             CEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceEeeCCeEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEEC
Confidence            56889999999999999999999999999998765433 3445789999999999999999999999999999998874

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.49  E-value=1.6e-13  Score=135.36  Aligned_cols=177  Identities=14%  Similarity=0.170  Sum_probs=105.4

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeeccc--cccccc---c--cccccCCCccEEee-----CCeEE
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDY--VQDRLV---A--NLIDPLSDKRFTLS-----GGNLI  259 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~--~l~~~~---~--~~~~~~~~~~~~~~-----~~~l~  259 (813)
                      ++..|..+.+.+|     ++|+|.|.+.+ +.+.|.|||++.  .+....   .  .........|+.+.     +.+|.
T Consensus         2 v~q~p~~v~v~~G-----~~v~L~C~~~~-~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~   75 (238)
T 1bec_A            2 VTQSPRNKVAVTG-----GKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLI   75 (238)
T ss_dssp             EEEECSEEEEETT-----CCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEE
T ss_pred             cccCCCeeEEeCC-----CcEEEEEEeCC-CCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEE
Confidence            3445677777777     77999999964 788999999752  111000   0  00011123455442     23688


Q ss_pred             EcCCccccCCeeEEEEeecCce----eeEeeeeEEeeee------ecccccC-CCCceeecCCCeEEEecCCCCCCc-ce
Q psy14896        260 INDPRQVEDRGSYHCKASNKFG----SIISESVQLAFGF------IGEFNLK-RAPEIGNQNWGKAMFCDPPTNYPG-VN  327 (813)
Q Consensus       260 i~~~~~~~d~G~Y~C~a~n~~g----~~~s~~~~l~v~~------~~~~~~~-~~~~~~~~~~~~~l~C~~~~~~p~-~~  327 (813)
                      |.+. +.+|+|.|+|.+.|..+    ......+.|.|..      +|.+.+. +....+..|+.++|.|.+.+..|. +.
T Consensus        76 I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~  154 (238)
T 1bec_A           76 LELA-TPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVE  154 (238)
T ss_dssp             ESSC-CGGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEE
T ss_pred             EecC-CcccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcE
Confidence            8885 89999999999998742    1123345566654      2223222 222344578889999997544575 49


Q ss_pred             EEEeeccccccccCC--ccEEEccCccEEE------eeeeecC-CeeeEEEEeeecc
Q psy14896        328 YYWARDYFPNFVEED--KRVFVSYDGALYF------SALEQID-AGNYSCNVQSKVS  375 (813)
Q Consensus       328 v~W~k~~~~~~~~~~--~~~~~~~~~~L~i------~~v~~~D-~G~Y~C~a~n~~g  375 (813)
                      ++|+|||.++.....  .......++++.+      .....+| .|.|+|.|.|...
T Consensus       155 v~W~~~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l  211 (238)
T 1bec_A          155 LSWWVNGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGL  211 (238)
T ss_dssp             EEEEETTEEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCC
T ss_pred             EEEEECCEECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCC
Confidence            999999987432111  0112233554433      3333334 5789999999743

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.49  E-value=1.5e-13  Score=134.47  Aligned_cols=175  Identities=14%  Similarity=0.159  Sum_probs=106.0

Q ss_pred             eeCCCceeecCCCccccccEEEEeeeccC--CCCeEEEeecc--ccccccccc---c--cc-cCCCccEEee--C----C
Q psy14896        193 IKQPTDVVFDLSKRSILNDITLSCYAGGY--PNPSYEWFKED--YVQDRLVAN---L--ID-PLSDKRFTLS--G----G  256 (813)
Q Consensus       193 ~~~p~~~~v~~g~~~~g~~v~l~C~~~g~--P~p~v~W~k~g--~~l~~~~~~---~--~~-~~~~~~~~~~--~----~  256 (813)
                      +..|..+.+.+|     ++++|.|.+.+.  +.+.+.|||..  ..+......   .  .. .....|+.+.  .    .
T Consensus         5 ~q~p~~v~~~~G-----~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   79 (230)
T 1ypz_F            5 EQPEISISRPRD-----ETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTS   79 (230)
T ss_dssp             ECSCSEEEEETT-----SCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEE
T ss_pred             cccCCEEEEeCC-----CcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEE
Confidence            344667777777     679999999874  66799999964  221100000   0  00 0134555543  1    1


Q ss_pred             eEEEcCCccccCCeeEEEEeecC---ceeeEeeeeEEeeee---------ecccccCC-CCceeecCCCeEEEecCCCCC
Q psy14896        257 NLIINDPRQVEDRGSYHCKASNK---FGSIISESVQLAFGF---------IGEFNLKR-APEIGNQNWGKAMFCDPPTNY  323 (813)
Q Consensus       257 ~l~i~~~~~~~d~G~Y~C~a~n~---~g~~~s~~~~l~v~~---------~~~~~~~~-~~~~~~~~~~~~l~C~~~~~~  323 (813)
                      +|.|.+. +.+|+|.|.|.+.+.   ........+.|.|..         +|.+.+.. ....+..|..++|.|.+....
T Consensus        80 ~L~I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~  158 (230)
T 1ypz_F           80 ILTIYSL-EEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFF  158 (230)
T ss_dssp             EEEECSC-CGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEES
T ss_pred             EEEECcC-ChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeec
Confidence            6788875 899999999999984   111223445677752         23222222 122344578899999976555


Q ss_pred             Cc-ceEEEee-ccccccccCCccEEEccCc------cEEEeeeeecCCeeeEEEEeeeccc
Q psy14896        324 PG-VNYYWAR-DYFPNFVEEDKRVFVSYDG------ALYFSALEQIDAGNYSCNVQSKVSD  376 (813)
Q Consensus       324 p~-~~v~W~k-~~~~~~~~~~~~~~~~~~~------~L~i~~v~~~D~G~Y~C~a~n~~g~  376 (813)
                      |. +.|+|++ ||+++.......+. ..++      .|.|..... | |.|+|.|.|..+.
T Consensus       159 P~~~~v~W~~~~g~~l~~~~~~~~~-~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~  216 (230)
T 1ypz_F          159 PDVIRVYWKEKDGNTILDSQEGDTL-KTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNK  216 (230)
T ss_dssp             SCCCEEEEECTTSSCBCCCEECCCE-EETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCT
T ss_pred             CCCeEEEEEccCCeEccccccceee-cCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCC
Confidence            76 6999999 88764211111111 2233      477777665 4 9999999997653

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.49  E-value=3.4e-13  Score=129.36  Aligned_cols=174  Identities=21%  Similarity=0.274  Sum_probs=107.3

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeeccc--ccccccccccccCCCccEEee-C------CeEEEcC
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDY--VQDRLVANLIDPLSDKRFTLS-G------GNLIIND  262 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~--~l~~~~~~~~~~~~~~~~~~~-~------~~l~i~~  262 (813)
                      ++..|..+.+.+|     ++++|.|.+.+.+ +.|.|||...  .+..............|+.+. +      .+|.|.+
T Consensus         4 v~q~p~~v~v~~G-----~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~   77 (207)
T 1ypz_E            4 VEQSPSALSLHEG-----TDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRD   77 (207)
T ss_dssp             EEESCSEEEEETT-----CCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECS
T ss_pred             cEECCCeEEEccC-----CcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECC
Confidence            3445677777777     7799999998754 5899999642  111000000001123344443 1      3688888


Q ss_pred             CccccCCeeEEEEeecCce---------e-eEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCc-ceEEEe
Q psy14896        263 PRQVEDRGSYHCKASNKFG---------S-IISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPG-VNYYWA  331 (813)
Q Consensus       263 ~~~~~d~G~Y~C~a~n~~g---------~-~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~-~~v~W~  331 (813)
                      . +.+|+|.|.|.+.+..+         . .....+.|.|.....  ....|.......+++|.|.+....|. +.++|+
T Consensus        78 v-~~~D~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~--~~~~P~v~~~~~~~~l~C~~~g~~P~~~~v~W~  154 (207)
T 1ypz_E           78 A-QLEDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQ--PPAKPSVFIMKNGTNVACLVKDFYPKEVTISLR  154 (207)
T ss_dssp             C-CGGGCEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCC--CCCCCEEEEEEETTEEEEEEEEESSSCCEEEEE
T ss_pred             C-CHHHCEEEEEEEecCCcccccccccceeeecCccEEEEccCCC--CCCCCeEEEeCCCCeEEEEEeeEeCCCeEEEEe
Confidence            5 99999999999998642         1 112345677653211  11122222223357999997666676 899999


Q ss_pred             eccccccccCCccEEEccCccEEEeeeee-cCCeeeEEEEeeeccc
Q psy14896        332 RDYFPNFVEEDKRVFVSYDGALYFSALEQ-IDAGNYSCNVQSKVSD  376 (813)
Q Consensus       332 k~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~n~~g~  376 (813)
                      ++ .++. .....+....+|.+.+..... +|.|.|+|.|.|..+.
T Consensus       155 ~~-~~l~-~~~~~~~~~~~g~y~~~~~~~~~~~~~ytC~v~~~~~~  198 (207)
T 1ypz_E          155 SS-KKIV-EFDPAIVISPSGKYSAVKLGQYGDSNSVTCSVQHNSET  198 (207)
T ss_dssp             CS-SEEE-ECCCEEEECTTSSEEEEECEEESSTTTCEEEEEETTEE
T ss_pred             cC-Cccc-CCccceEEcCCCcEEEEEeecccCCCcEEEEEEECCcc
Confidence            99 6542 223334446678777766655 6789999999997653

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=2.4e-13  Score=117.21  Aligned_cols=98  Identities=27%  Similarity=0.405  Sum_probs=78.8

Q ss_pred             CCCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEE-eeCCeEEEcCCccc
Q psy14896        188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFT-LSGGNLIINDPRQV  266 (813)
Q Consensus       188 ~~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~  266 (813)
                      .+|.|+..|.+..+.+|     ++++|.|.+.|.|.|.|.|||+|..+.         ..+.++. ..+++|.|.+. +.
T Consensus         7 ~pP~i~~~p~~~~v~~G-----~~v~l~C~~~g~p~p~i~W~k~g~~~~---------~~~~~~~~~~~~~L~i~~v-~~   71 (118)
T 2eo9_A            7 GPPVIRQGPVNQTVAVD-----GTFVLSCVATGSPVPTILWRKDGVLVS---------TQDSRIKQLENGVLQIRYA-KL   71 (118)
T ss_dssp             CSCCCSBCCCCEEEETT-----CEEEEECBCCCSSCCEEEEEESSSBCC---------TTSTTEEEEETTEEEEESC-CG
T ss_pred             CCCEEEcCCCCEEEcCC-----CeEEEEEEEEecCCCEEEEEECCEECc---------CCCCeEEEccCCEEEEccC-Cc
Confidence            47889999999988887     669999999999999999999998662         1233333 45788999886 89


Q ss_pred             cCCeeEEEEeecCceeeEeeeeEEeeeeecccccC
Q psy14896        267 EDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK  301 (813)
Q Consensus       267 ~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~  301 (813)
                      +|+|.|+|.|.|..|.. +..+.|.|...+.+.+.
T Consensus        72 ~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~p~~~  105 (118)
T 2eo9_A           72 GDTGRYTCIASTPSGEA-TWSAYIEVQEFGVPVQP  105 (118)
T ss_dssp             GGCCCEEEEEECSSCEE-EEECCEEEECCSCCCCC
T ss_pred             CCCEEEEEEEEcCCCcE-EEEEEEEEEeCCCCccC
Confidence            99999999999999986 66788888766554433

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=3.1e-14  Score=119.84  Aligned_cols=84  Identities=19%  Similarity=0.254  Sum_probs=67.2

Q ss_pred             CCCCcCCCCCCeEEEEEEecCC---CCCeEEEEeCCc-ccCC--Cceee----------ecceEEEECCCCCCCCEEEEE
Q psy14896        678 KTFPEAPKAGDKVRLECVAFGY---PVPSYNWTRRGS-PLPR--NAYFE----------NFNRILTIPNVKVEDQGEYIC  741 (813)
Q Consensus       678 ~~~~~~~~~G~~v~l~C~~~g~---P~p~i~W~k~g~-~l~~--~~~~~----------~~~~~L~i~~v~~~d~G~Y~C  741 (813)
                      .+.++.+.+|++++|.|.+.|.   |.|.|+|||++. .+..  +.++.          .....|+|.+++.+|+|.|+|
T Consensus        18 ~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   97 (118)
T 2edn_A           18 KPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRL   97 (118)
T ss_dssp             CCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTTCSCEEE
T ss_pred             CCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhhCEEEEE
Confidence            3444778999999999999875   789999999742 2221  11111          124789999999999999999


Q ss_pred             EEEcCCCceEEEEEEEEEcC
Q psy14896        742 RASNDRSALESSVTISIQAE  761 (813)
Q Consensus       742 ~a~N~~G~~~~~~~l~V~~~  761 (813)
                      +|+|..|..++.+.|.|+.|
T Consensus        98 evsn~~g~~s~~~~L~V~~~  117 (118)
T 2edn_A           98 EVKAKDTCDSCGFNIDVEAP  117 (118)
T ss_dssp             EEECSSCEEEEEECCEEECC
T ss_pred             EEEEcCCcEEEEEEEEEEcC
Confidence            99999999999999999875

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=1.8e-13  Score=113.99  Aligned_cols=93  Identities=28%  Similarity=0.463  Sum_probs=75.5

Q ss_pred             CCCCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEE-eeCCeEEEcCCcc
Q psy14896        187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFT-LSGGNLIINDPRQ  265 (813)
Q Consensus       187 ~~~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~  265 (813)
                      ..+|.|...|.+..+.+|     ++++|.|.+.|.|.|.|.|+|+|..+.         ..+.++. ..+++|.|.+. +
T Consensus         6 ~~~P~i~~~p~~~~v~~G-----~~~~l~C~~~g~p~p~v~W~~~~~~~~---------~~~~~~~~~~~~~L~i~~v-~   70 (100)
T 2edj_A            6 SGPPIILQGPANQTLAVD-----GTALLKCKATGDPLPVISWLKEGFTFP---------GRDPRATIQEQGTLQIKNL-R   70 (100)
T ss_dssp             CSSCEEEECCCCEEEESS-----SEEEECCEEECSSCCEEEEEESSSEES---------SSCSSCEECTTCCEEEESC-C
T ss_pred             CCCCEEEeCcCCEEEcCC-----CcEEEEEEEEEcCCCEEEEEECCEECC---------CCCCCEEEcCCCEEEEccC-C
Confidence            357899999999988877     669999999999999999999998663         1223333 34778999885 8


Q ss_pred             ccCCeeEEEEeecCceeeEeeeeEEeeeee
Q psy14896        266 VEDRGSYHCKASNKFGSIISESVQLAFGFI  295 (813)
Q Consensus       266 ~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~  295 (813)
                      .+|+|.|+|.|.|..|.. +..+.|.|..+
T Consensus        71 ~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~   99 (100)
T 2edj_A           71 ISDTGTYTCVATSSSGET-SWSAVLDVTES   99 (100)
T ss_dssp             TTTCCEEEEEEECSSCCC-BCCEEEEEESC
T ss_pred             cccCEEEEEEEEcCCCCE-EEEEEEEEecC
Confidence            999999999999999987 67788887543

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.48  E-value=4.5e-14  Score=117.55  Aligned_cols=79  Identities=23%  Similarity=0.401  Sum_probs=68.6

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCce-ee----ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAY-FE----NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI  756 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~-~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l  756 (813)
                      ..+.+|++++|.|.+.|.|.|.|+|+|+|..+..+.. +.    ....+|.|.+++.+|+|.|+|.|.|..|..+.++.|
T Consensus        15 ~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~g~~~~~~~l   94 (99)
T 1u2h_A           15 QSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARL   94 (99)
T ss_dssp             EEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             eEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEECCCceeEEEEE
Confidence            5678999999999999999999999999998876532 21    122379999999999999999999999999999999


Q ss_pred             EEEc
Q psy14896        757 SIQA  760 (813)
Q Consensus       757 ~V~~  760 (813)
                      .|.+
T Consensus        95 ~V~~   98 (99)
T 1u2h_A           95 EVRG   98 (99)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9975

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.48  E-value=1.2e-13  Score=135.33  Aligned_cols=176  Identities=16%  Similarity=0.253  Sum_probs=112.6

Q ss_pred             CceeccCCCceEEeCCCC-CCCccEEEEccCCCCC----c-------------ccCCCeEEEeeCcc-----EEEEeecc
Q psy14896        577 PEIGNQNWGKAMFCDPPT-NYPGVNYYWARDYFPN----F-------------VEEDKRVFVSYDGA-----LYFSALEQ  633 (813)
Q Consensus       577 ~~~~~~g~~~~l~C~~~~-~~p~~~v~W~k~~~~~----~-------------~~~~~~~~~~~~~~-----L~i~~~~~  633 (813)
                      ...+.+|+.++|.|.+.. ..+...+.|||.....    .             .....|+.+..++.     |+|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (230)
T 3n9g_H            9 AEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSLRS   88 (230)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCCh
Confidence            456788999999999832 1345689999742110    0             01134666654433     99999999


Q ss_pred             cCCeeEEEEEEeeec-----CccccCceeeEEEccCCC-ccccccCCCCCCCCCcCCCCCCeEEEEEEecCC-C-CCeEE
Q psy14896        634 IDAGNYSCNVQSKVS-----DTGRNGPFFPLKVFPHSN-FQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGY-P-VPSYN  705 (813)
Q Consensus       634 ~d~G~Y~C~a~n~~g-----~~~~~~~~~~l~v~~~p~-~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~-P-~p~i~  705 (813)
                      +|+|.|.|.+.+..+     ..........|.|...+. ...+..     ......+.+|+.++|.|.+.+. | .+.++
T Consensus        89 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~-----~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~  163 (230)
T 3n9g_H           89 EDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFP-----LAPSSKSTSGGTAALGCLVKDYFPEPVTVS  163 (230)
T ss_dssp             GGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEE-----ECCCCCCCTTCEEEEEEEEEEEBSSCCEEE
T ss_pred             hhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEe-----cCCCccccCCCCEEEEEEEEeEECCCEEEE
Confidence            999999999987531     111111224577753221 111110     0111335689999999999985 4 34799


Q ss_pred             EEeCCcccCCCcee----------eecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEc
Q psy14896        706 WTRRGSPLPRNAYF----------ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQA  760 (813)
Q Consensus       706 W~k~g~~l~~~~~~----------~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  760 (813)
                      |  +|..+..+...          ....+.|+|.....+| |.|+|.|.|..+.......|.|..
T Consensus       164 W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~v~~  225 (230)
T 3n9g_H          164 W--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPKS  225 (230)
T ss_dssp             E--GGGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTEEEEEECCCCT
T ss_pred             E--CCcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCcceEEEccCCC
Confidence            9  77666432110          1113479999999999 999999999988877777776653

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.47  E-value=1.9e-13  Score=114.72  Aligned_cols=94  Identities=14%  Similarity=0.201  Sum_probs=74.3

Q ss_pred             CCCCCCCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEee--C--CeEE
Q psy14896        184 DKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS--G--GNLI  259 (813)
Q Consensus       184 ~~~~~~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~--~--~~l~  259 (813)
                      ..+..+|.|+..|.+..+.+|     +++.|.|.+.|.|.|.|.|+|+|..+..          ..++.+.  .  .+|.
T Consensus         3 l~~~~~P~~~~~~~~~~v~~G-----~~v~l~C~~~g~p~p~i~W~k~~~~~~~----------~~~~~~~~~~~~~~L~   67 (103)
T 3qp3_A            3 FTLDHAPRITLRMRSHRVPCG-----QNTRFILNVQSKPTAEVKWYHNGVELQE----------SSKIHYTNTSGVLTLE   67 (103)
T ss_dssp             TTTCEEEEEEECCCCEEEETT-----CCEEEEEEEEEESCCEEEEEETTEECCC----------CSSEEEEEETTEEEEE
T ss_pred             CCCCCCCEEEeCCcceEEeCC-----CeEEEEEEEEecCCCEEEEEECCEECCC----------CCCEEEEECCCEEEEE
Confidence            345567899999999998887     6699999999999999999999987632          2233332  2  2577


Q ss_pred             EcCCccccCCeeEEEEeecCceeeEeeeeEEeeee
Q psy14896        260 INDPRQVEDRGSYHCKASNKFGSIISESVQLAFGF  294 (813)
Q Consensus       260 i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~  294 (813)
                      |.+. +.+|+|.|+|.|.|..|.. +..+.|.|..
T Consensus        68 i~~~-~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~~  100 (103)
T 3qp3_A           68 ILDC-HTDDSGTYRAVCTNYKGEA-SDYATLDVTG  100 (103)
T ss_dssp             ECSC-CGGGCEEEEEEEEETTEEE-EEEEEEEEEC
T ss_pred             EcCC-CcccCEEEEEEEEeCCCcE-EEEEEEEEEC
Confidence            7775 8999999999999999987 6677777753

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.47  E-value=2.3e-13  Score=116.59  Aligned_cols=97  Identities=24%  Similarity=0.388  Sum_probs=77.3

Q ss_pred             CCCCCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEee-C--C--eEEE
Q psy14896        186 IPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS-G--G--NLII  260 (813)
Q Consensus       186 ~~~~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~-~--~--~l~i  260 (813)
                      ...+|.|+..|.+..+.+|     ++++|.|.+.|.|.|.|.|+|+|..+..         ...++.+. +  +  +|.|
T Consensus        12 ~~~~p~f~~~p~~~~v~~G-----~~v~L~C~~~g~p~p~v~W~k~~~~~~~---------~~~~~~~~~~~~~~~~L~I   77 (116)
T 2kkq_A           12 HKRAPMFIYKPQSKKVLEG-----DSVKLECQISAIPPPKLFWKRNNEMVQF---------NTDRISLYQDNTGRVTLLI   77 (116)
T ss_dssp             CCBCCCBSSCCCCEEEETT-----EEEEEEEEBCCBSCCEEEEEETTEECCC---------CBTTEEEEECTTCEEEEEE
T ss_pred             CCCCCeEEeCCCcEEEeCC-----CcEEEEEEEeccCCCEEEEEECCEECcC---------CCCeEEEEeCCCCeEEEEE
Confidence            3457899999999998888     6699999999999999999999986631         22344432 2  2  6888


Q ss_pred             cCCccccCCeeEEEEeecCceeeEeeeeEEeeeeeccc
Q psy14896        261 NDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEF  298 (813)
Q Consensus       261 ~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~  298 (813)
                      .+. +.+|+|.|+|.|.|..|.. +..+.|.|..+|..
T Consensus        78 ~~v-~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~~~p~~  113 (116)
T 2kkq_A           78 KDV-NKKDAGWYTVSAVNEAGVT-TCNTRLDVTARPNQ  113 (116)
T ss_dssp             EEE-CGGGCEEEEEEEEETTEEE-EEEEEEEEECCSCC
T ss_pred             CCC-CcccCEEEEEEEEcCCCeE-EEEEEEEEeCCCCC
Confidence            875 8999999999999999987 67888888776654

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.47  E-value=8.1e-14  Score=113.56  Aligned_cols=78  Identities=21%  Similarity=0.312  Sum_probs=64.3

Q ss_pred             CCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceee----ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEE
Q psy14896        679 TFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----NFNRILTIPNVKVEDQGEYICRASNDRSALESSV  754 (813)
Q Consensus       679 ~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~  754 (813)
                      +.+..+.+|++++|.|.+.+ |+|.|+|+|||.+|..+.++.    ....+|.|.+++.+|+|.|+|.|.|.    ..++
T Consensus        12 ~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n~----~~sa   86 (93)
T 1waa_A           12 LYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANT----KSAA   86 (93)
T ss_dssp             CCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETTE----EEEE
T ss_pred             CcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECCC----cEEE
Confidence            33467899999999999987 557999999999998766442    22358999999999999999999884    5788


Q ss_pred             EEEEEcC
Q psy14896        755 TISIQAE  761 (813)
Q Consensus       755 ~l~V~~~  761 (813)
                      .|.|.++
T Consensus        87 ~L~V~~~   93 (93)
T 1waa_A           87 NLKVKEL   93 (93)
T ss_dssp             EEEEECC
T ss_pred             EEEEEcC
Confidence            8888754

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.47  E-value=2.4e-13  Score=111.90  Aligned_cols=87  Identities=16%  Similarity=0.251  Sum_probs=72.2

Q ss_pred             CCCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCcccc
Q psy14896        188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE  267 (813)
Q Consensus       188 ~~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~  267 (813)
                      .||.|...|.+..+.+|     +++.|.|.+.|.| |.|.|||+|..+.          .+.++.+.+++|.|.+. +.+
T Consensus         8 ~pp~~~~~~~~~~v~~G-----~~v~l~C~~~g~p-p~i~W~k~g~~~~----------~~~~~~~~~~~L~i~~~-~~~   70 (95)
T 2ckn_A            8 QPWGVPVEVESLLVHPG-----DLLQLRCRLRDDV-QSINWLRDGVQLV----------ESNRTRITGEEVEVRDS-IPA   70 (95)
T ss_dssp             CSCCBTTBBCCEEECTT-----SCEEEECCEESSC-CEEEEEBTTBCCC----------CCSSEEECSSEEEESSC-CGG
T ss_pred             CCCEEEcCcceEEEcCC-----CeEEEEEECCCCC-CceEEEECCEecC----------CCCCEEEeCCEEEECCC-ChH
Confidence            46888888888888777     6699999999988 8999999998652          34466667888999886 899


Q ss_pred             CCeeEEEEeecCceeeEeeeeEEee
Q psy14896        268 DRGSYHCKASNKFGSIISESVQLAF  292 (813)
Q Consensus       268 d~G~Y~C~a~n~~g~~~s~~~~l~v  292 (813)
                      |+|.|+|.|.|..|.. +..+.|.|
T Consensus        71 D~G~Y~C~a~n~~g~~-~~~~~l~V   94 (95)
T 2ckn_A           71 DSGLYACVTSSPSGSD-TTYFSVNV   94 (95)
T ss_dssp             GSEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             HCEEEEEEeccCCCcE-EEEEEEEE
Confidence            9999999999999986 56666665

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.47  E-value=9.1e-14  Score=112.36  Aligned_cols=72  Identities=21%  Similarity=0.396  Sum_probs=59.7

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceee----ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS  757 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~  757 (813)
                      +.+.+|+++.|.|.+.+ |.|.|+|+|||++|..+.++.    +...+|.|.+++.+|+|.|+|.|.|.    +.++.|+
T Consensus        16 v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~----~~~~~lt   90 (91)
T 2lvc_A           16 VHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGDE----CAYFTVT   90 (91)
T ss_dssp             EECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECSSC----EEEEEEE
T ss_pred             EEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEcce----EEEEEEE
Confidence            34678999999999976 889999999999998776542    23457999999999999999999764    6777776


Q ss_pred             E
Q psy14896        758 I  758 (813)
Q Consensus       758 V  758 (813)
                      |
T Consensus        91 V   91 (91)
T 2lvc_A           91 I   91 (91)
T ss_dssp             C
T ss_pred             C
Confidence            5

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	813
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	1e-14
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	1e-14
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	8e-08
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	4e-14
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	9e-08
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	9e-08
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	5e-04
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	5e-14
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	5e-10
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	5e-10
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	1e-04
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	1e-13
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	8e-10
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	8e-10
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	2e-04
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	2e-13
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	1e-07
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	1e-07
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	0.004
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	5e-13
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	5e-05
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	5e-05
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	3e-12
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	3e-05
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	3e-05
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	0.001
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	1e-11
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-06
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-06
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	1e-11
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	2e-06
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	2e-06
d1ypqa1	131	d.169.1.1 (A:140-270) Oxidised low density lipopro	4e-11
d1tdqb_	126	d.169.1.1 (B:) Aggrecan core protein {Rat (Rattus	1e-10
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	1e-10
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	5e-07
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	5e-07
d3c8ja1	122	d.169.1.1 (A:138-259) NK cell receptor {Mouse (Mus	2e-10
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	2e-10
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	9e-05
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	9e-05
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-10
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-06
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	3e-06
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	2e-10
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	2e-09
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	2e-09
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	3e-10
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	3e-07
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	1e-06
d1xpha1	130	d.169.1.1 (A:265-394) DC-SIGNR (DC-SIGN related re	4e-10
d1e87a_	117	d.169.1.1 (A:) CD69 {Human (Homo sapiens) [TaxId:	5e-10
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	5e-10
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	2e-05
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	2e-05
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	7e-10
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	5e-09
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	5e-09
d1qo3c_	133	d.169.1.1 (C:) NK cell receptor {Mouse (Mus muscul	8e-10
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	9e-10
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	8e-05
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	8e-05
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	1e-09
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	8e-04
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	8e-04
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	5e-09
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	7e-04
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	7e-04
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	7e-09
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	2e-04
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	0.003
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	9e-09
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	2e-08
d1uv0a_	140	d.169.1.1 (A:) Pancreatitis-associated protein 1 {	2e-08
d1kg0c_	136	d.169.1.1 (C:) EBV gp42 {Epstein-Barr virus [TaxId	3e-08
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	5e-08
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	2e-06
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	2e-06
d1hq8a_	123	d.169.1.1 (A:) NK cell-activating receptor nkg2d {	1e-07
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	1e-07
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	1e-07
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	3e-07
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	2e-07
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	1e-04
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	1e-04
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	2e-07
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	2e-07
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	8e-06
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	3e-07
d1t8da1	143	d.169.1.1 (A:1-143) Low affinity immunoglobulin ep	6e-07
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	7e-07
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	5e-04
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	5e-04
d2fcba2	88	b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C	8e-07
d1qdda_	144	d.169.1.1 (A:) Lithostathine, inhibitor of stone f	1e-06
d1wmza_	140	d.169.1.1 (A:) Lectin CEL-I {Cucumaria echinata [T	1e-06
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	2e-06
d1dv8a_	128	d.169.1.1 (A:) H1 subunit of the asialoglycoprotei	2e-06
d1c3ab_	125	d.169.1.1 (B:) Snake coagglutinin beta chain {Habu	2e-06
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	3e-06
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	4e-05
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	4e-05
d3bdwa1	121	d.169.1.1 (A:59-179) CD94 {Human (Homo sapiens) [T	4e-06
d1jzna_	135	d.169.1.1 (A:) Galactose-specific C-type lectin {W	5e-06
d1fnla2	89	b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (C	5e-06
d2afpa_	129	d.169.1.1 (A:) Type II antifreeze protein {Sea rav	7e-06
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	7e-06
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	8e-06
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	1e-04
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	1e-04
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	9e-06
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	2e-04
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	0.003
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	1e-05
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	1e-05
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	1e-05
d1olza1	92	b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {	1e-05
d1v7pb_	127	d.169.1.1 (B:) Snake coagglutinin beta chain {Snak	1e-05
d1oz7a_	131	d.169.1.1 (A:) Snake coagglutinin alpha chain {Saw	2e-05
d1j34b_	123	d.169.1.1 (B:) Snake coagglutinin beta chain {Habu	2e-05
d1f2qa2	89	b.1.1.4 (A:86-174) IgE high affinity receptor alph	2e-05
d1oz7b_	123	d.169.1.1 (B:) Snake coagglutinin beta chain {Saw-	2e-05
d1umrc_	125	d.169.1.1 (C:) Snake coagglutinin beta chain {Sout	2e-05
d1egga_	136	d.169.1.1 (A:) Macrophage mannose receptor, CRD4 {	2e-05
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	2e-05
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	0.003
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	0.003
d1jwib_	123	d.169.1.1 (B:) Snake coagglutinin beta chain {Puff	2e-05
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	3e-05
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	3e-05
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	7e-05
d1v7pa_	134	d.169.1.1 (A:) Snake coagglutinin alpha chain {Sna	3e-05
d1jwia_	124	d.169.1.1 (A:) Snake coagglutinin alpha chain {Puf	4e-05
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	4e-05
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	4e-05
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	0.002
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	0.002
d1wk1a_	150	d.169.1.1 (A:) Hypothetical protein F28B4.3 {Caeno	4e-05
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	4e-05
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	0.001
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	0.001
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	6e-05
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	1e-04
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	1e-04
d1gz2a_	139	d.169.1.1 (A:) Ovocleidin-17 {Chicken (Gallus gall	1e-04
d1tn3a_	137	d.169.1.1 (A:) Tetranectin {Human (Homo sapiens) [	1e-04
d1sb2b1	127	d.169.1.1 (B:2-128) Snake coagglutinin beta chain	2e-04
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	2e-04
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	2e-04
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	2e-04
d1j34a_	129	d.169.1.1 (A:) Snake coagglutinin alpha chain {Hab	2e-04
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	2e-04
d1g1ta1	118	d.169.1.1 (A:1-118) E-selectin, C-lectin domain {H	3e-04
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	3e-04
d1cs6a2	105	b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall	3e-04
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	5e-04
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	5e-04
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	5e-04
d1g1sa1	118	d.169.1.1 (A:1-118) P-selectin, C-lectin domain {H	6e-04
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	6e-04
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	0.003
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	0.003
d2nxyb1	97	b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Ho	7e-04
d1sb2a1	132	d.169.1.1 (A:1-132) Snake coagglutinin alpha chain	8e-04
d1fnla1	84	b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD3	0.001
d1umra_	135	d.169.1.1 (A:) Snake coagglutinin alpha chain {Sou	0.001
d1l6za1	107	b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, C	0.002
d1vcaa2	90	b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1	0.002
d1fvua_	133	d.169.1.1 (A:) Snake coagglutinin alpha chain {Jar	0.002
d1hupa1	117	d.169.1.1 (A:112-228) Mannose-binding protein A, C	0.003
d1f2qa1	82	b.1.1.4 (A:4-85) IgE high affinity receptor alpha	0.003
d1l6za2	96	b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a,	0.004

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 68.0 bits (165), Expect = 1e-14
 Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 10/104 (9%)

Query: 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
           GP F +QP   +F     S    +TL+C A   P  +Y W              +    D
Sbjct: 4   GPVFEEQPAHTLFPEG--SAEEKVTLTCRARANPPATYRWKMNG--------TELKMGPD 53

Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAF 292
            R+ L  G+L+I++P + +D GSY C A+N  G+++S    L F
Sbjct: 54  SRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRF 97

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 68.0 bits (165), Expect = 1e-14
 Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 10/104 (9%)

Query: 462 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 521
           GP F +QP   +F     S    +TL+C A   P  +Y W              +    D
Sbjct: 4   GPVFEEQPAHTLFPEG--SAEEKVTLTCRARANPPATYRWKMNG--------TELKMGPD 53

Query: 522 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAF 565
            R+ L  G+L+I++P + +D GSY C A+N  G+++S    L F
Sbjct: 54  SRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRF 97

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.7 bits (115), Expect = 8e-08
 Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 11/90 (12%)

Query: 675 NFPKTFPEAPK--------AGDKVRLECVAFGYPVPSYNWTRRGSPL---PRNAYFENFN 723
           ++   F E P         A +KV L C A   P  +Y W   G+ L   P + Y     
Sbjct: 2   SYGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG 61

Query: 724 RILTIPNVKVEDQGEYICRASNDRSALESS 753
            ++    VK +D G Y C A+N R  + S 
Sbjct: 62  DLVISNPVKAKDAGSYQCVATNARGTVVSR 91

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 66.4 bits (161), Expect = 4e-14
 Identities = 25/76 (32%), Positives = 34/76 (44%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRAS 744
             G  +R  CVA G P P+  W R G PL      E     L    + +ED G Y C A 
Sbjct: 14  DIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAE 73

Query: 745 NDRSALESSVTISIQA 760
           N    + +S  +++QA
Sbjct: 74  NKHGTVYASAELTVQA 89

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.3 bits (114), Expect = 9e-08
 Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 17/101 (16%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           P ++   TD   D+       D+  SC A G P P+  W ++               S  
Sbjct: 2   PDWLDVITDTEADIGS-----DLRWSCVASGKPRPAVRWLRDGQPLA----------SQN 46

Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
           R  +SGG L  +    +ED G Y C A NK G++ + S +L
Sbjct: 47  RIEVSGGELRFSKL-VLEDSGMYQCVAENKHGTVYA-SAEL 85

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.3 bits (114), Expect = 9e-08
 Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 17/101 (16%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
           P ++   TD   D+       D+  SC A G P P+  W ++               S  
Sbjct: 2   PDWLDVITDTEADIGS-----DLRWSCVASGKPRPAVRWLRDGQPLA----------SQN 46

Query: 523 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
           R  +SGG L  +    +ED G Y C A NK G++ + S +L
Sbjct: 47  RIEVSGGELRFSKL-VLEDSGMYQCVAENKHGTVYA-SAEL 85

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 37.9 bits (87), Expect = 5e-04
 Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 2/55 (3%)

Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVK--MRGPY 464
             G  +R  CVA G P P+  W R G PL      E     L    +     G Y
Sbjct: 14  DIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMY 68

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 65.9 bits (160), Expect = 5e-14
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 1/74 (1%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRAS 744
           K G  V + C   G P P+  W+    PL         +  L I  VK  D+G Y CRA+
Sbjct: 16  KQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRA-TVTDSGLVIKGVKNGDKGYYGCRAT 74

Query: 745 NDRSALESSVTISI 758
           N+         + +
Sbjct: 75  NEHGDKYFETLVQV 88

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 54.4 bits (130), Expect = 5e-10
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 16/97 (16%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           P + ++P  V+          D+T+ C   G P P+  W                PLS  
Sbjct: 3   PKYEQKPEKVIVVKQG----QDVTIPCKVTGLPAPNVVWSHNAK-----------PLSGG 47

Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE 286
           R T++   L+I    +  D+G Y C+A+N+ G    E
Sbjct: 48  RATVTDSGLVIKGV-KNGDKGYYGCRATNEHGDKYFE 83

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 54.4 bits (130), Expect = 5e-10
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 16/97 (16%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
           P + ++P  V+          D+T+ C   G P P+  W                PLS  
Sbjct: 3   PKYEQKPEKVIVVKQG----QDVTIPCKVTGLPAPNVVWSHNAK-----------PLSGG 47

Query: 523 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE 559
           R T++   L+I    +  D+G Y C+A+N+ G    E
Sbjct: 48  RATVTDSGLVIKGV-KNGDKGYYGCRATNEHGDKYFE 83

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 39.4 bits (91), Expect = 1e-04
 Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMR--GPY 464
           K G  V + C   G P P+  W+    PL         +  L I  VK    G Y
Sbjct: 16  KQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRA-TVTDSGLVIKGVKNGDKGYY 69

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 65.2 bits (158), Expect = 1e-13
 Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 5/79 (6%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-----YFENFNRILTIPNVKVEDQGEY 739
            A + V+  C A G P+P+  W + G    +          N +  L + +V   D+G Y
Sbjct: 18  PAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNY 77

Query: 740 ICRASNDRSALESSVTISI 758
            C   N+  ++  +  + +
Sbjct: 78  TCVVENEYGSINHTYHLDV 96

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 54.4 bits (130), Expect = 8e-10
 Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 8/101 (7%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           PY+      +   L      N +   C AGG P P+  W K      +        + ++
Sbjct: 2   PYWT-NTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 60

Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
            ++L      I +     D+G+Y C   N++GS I+ +  L
Sbjct: 61  HWSL------IMESVVPSDKGNYTCVVENEYGS-INHTYHL 94

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 54.4 bits (130), Expect = 8e-10
 Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 8/101 (7%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
           PY+      +   L      N +   C AGG P P+  W K      +        + ++
Sbjct: 2   PYWT-NTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 60

Query: 523 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
            ++L      I +     D+G+Y C   N++GS I+ +  L
Sbjct: 61  HWSL------IMESVVPSDKGNYTCVVENEYGS-INHTYHL 94

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 2e-04
 Identities = 9/39 (23%), Positives = 16/39 (41%)

Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFN 450
            A + V+  C A G P+P+  W + G    +      + 
Sbjct: 18  PAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYK 56

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.9 bits (157), Expect = 2e-13
 Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 4/82 (4%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYI 740
           +AG+ V L     G    +  W +    +  + +           LTI   + E  G Y 
Sbjct: 13  RAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYT 72

Query: 741 CRASNDRSALESSVTISIQAEP 762
               N   + ++ V +++  +P
Sbjct: 73  LLVENKLGSRQAQVNLTVVDKP 94

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (114), Expect = 1e-07
 Identities = 18/97 (18%), Positives = 27/97 (27%), Gaps = 12/97 (12%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           P  I+ P D      +      + L     G    +  W K                   
Sbjct: 1   PQIIQFPEDQKVRAGE-----SVELFGKVTGTQPITCTWMKFRKQIQE------SEHMKV 49

Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE 286
             + +G  L I    + E  G Y     NK GS  ++
Sbjct: 50  ENSENGSKLTILAA-RQEHCGCYTLLVENKLGSRQAQ 85

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (114), Expect = 1e-07
 Identities = 18/97 (18%), Positives = 27/97 (27%), Gaps = 12/97 (12%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
           P  I+ P D      +      + L     G    +  W K                   
Sbjct: 1   PQIIQFPEDQKVRAGE-----SVELFGKVTGTQPITCTWMKFRKQIQE------SEHMKV 49

Query: 523 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE 559
             + +G  L I    + E  G Y     NK GS  ++
Sbjct: 50  ENSENGSKLTILAA-RQEHCGCYTLLVENKLGSRQAQ 85

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (80), Expect = 0.004
 Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 6/59 (10%)

Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKMR--GPY 464
           +AG+ V L     G    +  W +    +  + +           LTI   +    G Y
Sbjct: 13  RAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCY 71

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 63.3 bits (153), Expect = 5e-13
 Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 4/92 (4%)

Query: 671 KFPNNFPKTFPEAPKA--GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTI 728
           ++  +    FP    A  G  V LEC AFG PVP   W +          + +   +L I
Sbjct: 2   QYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS--KWLSSEPLLHI 59

Query: 729 PNVKVEDQGEYICRASNDRSALESSVTISIQA 760
            NV  ED+G Y C A N +        I I A
Sbjct: 60  QNVDFEDEGTYECEAENIKGRDTYQGRIIIHA 91

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 40.6 bits (94), Expect = 5e-05
 Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 14/81 (17%)

Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269
             +TL C+A G P P  +W K D  Q     +    L  +                 ED 
Sbjct: 21  QMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNV-------------DFEDE 67

Query: 270 GSYHCKASNKFGSIISESVQL 290
           G+Y C+A N  G   +   ++
Sbjct: 68  GTYECEAENIKGR-DTYQGRI 87

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 40.6 bits (94), Expect = 5e-05
 Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 14/81 (17%)

Query: 483 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 542
             +TL C+A G P P  +W K D  Q     +    L  +                 ED 
Sbjct: 21  QMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNV-------------DFEDE 67

Query: 543 GSYHCKASNKFGSIISESVQL 563
           G+Y C+A N  G   +   ++
Sbjct: 68  GTYECEAENIKGR-DTYQGRI 87

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.1 bits (147), Expect = 3e-12
 Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 8/88 (9%)

Query: 679 TFPEAP-----KAGDKVRLECVAFGYPVPSYNWTRRGSPL---PRNAYFENFNRILTIPN 730
            F  AP     K G+   + C       P+  W  +G  +       +    N  L I  
Sbjct: 3   MFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRG 62

Query: 731 VKVEDQGEYICRASNDRSALESSVTISI 758
           +K  D+G Y C          +   I +
Sbjct: 63  IKKTDEGTYRCEGRILARGEINFKDIQV 90

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.1 bits (95), Expect = 3e-05
 Identities = 15/97 (15%), Positives = 24/97 (24%), Gaps = 13/97 (13%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
             F   PT   F         D  + C       P+  W  +              LS+ 
Sbjct: 2   LMFKNAPTPQEFKEG-----EDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN 56

Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE 286
              +           +  D G+Y C+        I+ 
Sbjct: 57  YLQIR--------GIKKTDEGTYRCEGRILARGEINF 85

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.1 bits (95), Expect = 3e-05
 Identities = 15/97 (15%), Positives = 24/97 (24%), Gaps = 13/97 (13%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
             F   PT   F         D  + C       P+  W  +              LS+ 
Sbjct: 2   LMFKNAPTPQEFKEG-----EDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN 56

Query: 523 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE 559
              +           +  D G+Y C+        I+ 
Sbjct: 57  YLQIR--------GIKKTDEGTYRCEGRILARGEINF 85

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 8/63 (12%)

Query: 406 TFPEAP-----KAGDKVRLECVAFGYPVPSYNWTRRGSP---LPRNAYFENFNRILTIPN 457
            F  AP     K G+   + C       P+  W  +G          +    N  L I  
Sbjct: 3   MFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRG 62

Query: 458 VKM 460
           +K 
Sbjct: 63  IKK 65

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 59.1 bits (142), Expect = 1e-11
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 4/79 (5%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYI 740
             G+  R  C   G PVP+  W R+G  L  +A        +     I +V+  D+G Y 
Sbjct: 12  YEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYS 71

Query: 741 CRASNDRSALESSVTISIQ 759
               N     E+  T++IQ
Sbjct: 72  VVVENSEGKQEAEFTLTIQ 90

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 2e-06
 Identities = 16/99 (16%), Positives = 26/99 (26%), Gaps = 13/99 (13%)

Query: 192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRF 251
            + +P  +     +         SC   G P P+  W ++  V      + +     K  
Sbjct: 2   ILTKPRSMTVYEGE-----SARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKST 56

Query: 252 TLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
                        Q  D G+Y     N  G        L
Sbjct: 57  -------FEISSVQASDEGNYSVVVENSEGK-QEAEFTL 87

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 2e-06
 Identities = 16/99 (16%), Positives = 26/99 (26%), Gaps = 13/99 (13%)

Query: 465 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRF 524
            + +P  +     +         SC   G P P+  W ++  V      + +     K  
Sbjct: 2   ILTKPRSMTVYEGE-----SARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKST 56

Query: 525 TLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
                        Q  D G+Y     N  G        L
Sbjct: 57  -------FEISSVQASDEGNYSVVVENSEGK-QEAEFTL 87

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.5 bits (143), Expect = 1e-11
 Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 13/99 (13%)

Query: 675 NFPKTFPEAPK-------AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAY------FEN 721
           N P T              G  V L C A G+P P+ +WT+ G P+           F +
Sbjct: 1   NVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSD 60

Query: 722 FNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQA 760
            +  LTI NV   D+ EY+C A N     ++S+ + + A
Sbjct: 61  DSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA 99

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.9 bits (105), Expect = 2e-06
 Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 6/81 (7%)

Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269
             +TL C A G+P P+  W K+    +       +   +K       + +        D 
Sbjct: 21  QSVTLVCDADGFPEPTMSWTKDGEPIE-----NEEEDDEKHIFSDDSSELTIRNVDKNDE 75

Query: 270 GSYHCKASNKFGSIISESVQL 290
             Y C A NK G     S+ L
Sbjct: 76  AEYVCIAENKAGE-QDASIHL 95

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.9 bits (105), Expect = 2e-06
 Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 6/81 (7%)

Query: 483 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 542
             +TL C A G+P P+  W K+    +       +   +K       + +        D 
Sbjct: 21  QSVTLVCDADGFPEPTMSWTKDGEPIE-----NEEEDDEKHIFSDDSSELTIRNVDKNDE 75

Query: 543 GSYHCKASNKFGSIISESVQL 563
             Y C A NK G     S+ L
Sbjct: 76  AEYVCIAENKAGE-QDASIHL 95

>d1ypqa1 d.169.1.1 (A:140-270) Oxidised low density lipoprotein {Human (Homo sapiens) [TaxId: 9606]} Length = 131

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Oxidised low density lipoprotein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (142), Expect = 4e-11
 Identities = 26/130 (20%), Positives = 45/130 (34%), Gaps = 8/130 (6%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
           CPQ W+ + ++CY F          ++  C SLD+ L  +N   +  FI   + +     
Sbjct: 5   CPQDWIWHGENCYLFSSGS-FNWEKSQEKCLSLDAKLLKINSTADLDFIQQAISYSS--F 61

Query: 89  RKWYFGGTQQSPNLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVT 148
             W     +     W+ EDG+ L           +        AY     ++R       
Sbjct: 62  PFWMGLSRRNPSYPWLWEDGSPLMPHLFRVRGAVSQTYPSGTCAY-----IQRGAVYAEN 116

Query: 149 GMEPLLFICE 158
            +     IC+
Sbjct: 117 CILAAFSICQ 126

>d1tdqb_ d.169.1.1 (B:) Aggrecan core protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Aggrecan core protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.8 bits (138), Expect = 1e-10
 Identities = 21/130 (16%), Positives = 38/130 (29%), Gaps = 8/130 (6%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
           C + W +++  CYR      +T  DA+  C+   S L+++   +E  F+           
Sbjct: 3   CEEGWTKFQGHCYRHFPDR-ETWVDAERRCREQQSHLSSIVTPEEQEFVNKNAQDYQ--- 58

Query: 89  RKWYFGGTQQSPNLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVT 148
             W     +     +   DG +L                 +            W      
Sbjct: 59  --WIGLNDRTIEGDFRWSDGHSLQFEKWRPNQPDNFFATGEDCVVMIWHERGEWNDVPCN 116

Query: 149 GMEPLLFICE 158
               L F C+
Sbjct: 117 --YQLPFTCK 124

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.8 bits (136), Expect = 1e-10
 Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 4/82 (4%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----NFNRILTIPNVKVEDQGEYI 740
             G      C       P   W +    L ++  +       +  LTI  VK +D+GEY 
Sbjct: 14  GEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYT 73

Query: 741 CRASNDRSALESSVTISIQAEP 762
            RA N     E  V +++    
Sbjct: 74  VRAKNSYGTKEEIVFLNVTRHS 95

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.4 bits (109), Expect = 5e-07
 Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 13/101 (12%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           P FI +P        +          C       P   W K+D    +     +   +  
Sbjct: 2   PRFIVKPYGTEVGEGQ-----SANFYCRVIASSPPVVTWHKDDRELKQ-SVKYMKRYNGN 55

Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
            + L+   +      + +D+G Y  +A N +G+   E V L
Sbjct: 56  DYGLTINRV------KGDDKGEYTVRAKNSYGT-KEEIVFL 89

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.4 bits (109), Expect = 5e-07
 Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 13/101 (12%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
           P FI +P        +          C       P   W K+D    +     +   +  
Sbjct: 2   PRFIVKPYGTEVGEGQ-----SANFYCRVIASSPPVVTWHKDDRELKQ-SVKYMKRYNGN 55

Query: 523 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
            + L+   +      + +D+G Y  +A N +G+   E V L
Sbjct: 56  DYGLTINRV------KGDDKGEYTVRAKNSYGT-KEEIVFL 89

>d3c8ja1 d.169.1.1 (A:138-259) NK cell receptor {Mouse (Mus musculus), ly49-c [TaxId: 10090]} Length = 122

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: NK cell receptor
species: Mouse (Mus musculus), ly49-c [TaxId: 10090]

 Score = 57.2 bits (137), Expect = 2e-10
 Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 14/136 (10%)

Query: 28  RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQ 87
           R  ++W  Y   CY F+ +   T +  K NC+     +  + D DE  F+   +   +  
Sbjct: 1   RGVKYWFCYSTKCYYFIMNK-TTWSGCKANCQHYGVPILKIEDEDELKFLQRHVIPGNY- 58

Query: 88  RRKWYFGGTQQSPNLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERV 147
              W      +    W   D           +     N +     +     L +   E +
Sbjct: 59  ---WIGLSYDKKKKEWAWIDNGPSK----LDMKIKKMNFKSRGCVF-----LSKARIEDI 106

Query: 148 TGMEPLLFICEASIQK 163
               P   IC   + K
Sbjct: 107 DCNIPYYCICGKKLDK 122

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.8 bits (133), Expect = 2e-10
 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 7/89 (7%)

Query: 677 PKTFPEAPK-----AGDKVRLECVAF-GYPVPSYNWTRRGSPLPRNAYFENFNRILTIPN 730
                E  +      G  V   C A    P  +  WTR  +    +    +FN ILTI N
Sbjct: 2   IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS-RAMDFNGILTIRN 60

Query: 731 VKVEDQGEYICRASNDRSALESSVTISIQ 759
           V+  D G Y+C  SN  +  + + T+ +Q
Sbjct: 61  VQPSDAGTYVCTGSNMFAMDQGTATLHVQ 89

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.6 bits (91), Expect = 9e-05
 Identities = 18/100 (18%), Positives = 28/100 (28%), Gaps = 19/100 (19%)

Query: 192 FIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKR 250
            +++               D+T  C A    P  +  W +                   R
Sbjct: 5   TVEEQRSQSVRPGA-----DVTFICTAKSKSPAYTLVWTRLHN-----------GKLPSR 48

Query: 251 FTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
                G L I + +   D G+Y C  SN F      +  L
Sbjct: 49  AMDFNGILTIRNVQP-SDAGTYVCTGSNMFAM-DQGTATL 86

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.6 bits (91), Expect = 9e-05
 Identities = 18/100 (18%), Positives = 28/100 (28%), Gaps = 19/100 (19%)

Query: 465 FIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKR 523
            +++               D+T  C A    P  +  W +                   R
Sbjct: 5   TVEEQRSQSVRPGA-----DVTFICTAKSKSPAYTLVWTRLHN-----------GKLPSR 48

Query: 524 FTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
                G L I + +   D G+Y C  SN F      +  L
Sbjct: 49  AMDFNGILTIRNVQP-SDAGTYVCTGSNMFAM-DQGTATL 86

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 56.0 bits (134), Expect = 2e-10
 Identities = 21/95 (22%), Positives = 30/95 (31%), Gaps = 16/95 (16%)

Query: 682 EAPK-----------AGDKVRLECVAFGYPVPSYNWTRRGSPLP-----RNAYFENFNRI 725
           EAPK            G          G P P   W + G  +         + E+    
Sbjct: 3   EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 62

Query: 726 LTIPNVKVEDQGEYICRASNDRSALESSVTISIQA 760
           L I +V  ED    + +A N      S   + +QA
Sbjct: 63  LVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 97

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 2e-06
 Identities = 21/106 (19%), Positives = 28/106 (26%), Gaps = 16/106 (15%)

Query: 460 MRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 519
           M  P   ++               D        G P+P  EW+K            I+  
Sbjct: 2   MEAPKIFERIQSQTVGQGS-----DAHFRVRVVGKPDPECEWYKNGVK--------IERS 48

Query: 520 SDKRFTLSGGNLIINDPRQVE--DRGSYHCKASNKFGSIISESVQL 563
               +     N+     R V   D  S   KA N  G   S    L
Sbjct: 49  DRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSS-HAFL 93

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 3e-06
 Identities = 20/103 (19%), Positives = 27/103 (26%), Gaps = 16/103 (15%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           P   ++               D        G P+P  EW+K            I+     
Sbjct: 5   PKIFERIQSQTVGQGS-----DAHFRVRVVGKPDPECEWYKNGVK--------IERSDRI 51

Query: 250 RFTLSGGNLIINDPRQVE--DRGSYHCKASNKFGSIISESVQL 290
            +     N+     R V   D  S   KA N  G   S    L
Sbjct: 52  YWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSS-HAFL 93

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 56.1 bits (134), Expect = 2e-10
 Identities = 18/91 (19%), Positives = 25/91 (27%), Gaps = 17/91 (18%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-----------------YFENFNRILT 727
             G  V   C  +    P   W +                            +    +L 
Sbjct: 18  VVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLY 77

Query: 728 IPNVKVEDQGEYICRASNDRSALESSVTISI 758
           I NV  ED GEY C A N       S  +++
Sbjct: 78  IRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 53.4 bits (127), Expect = 2e-09
 Identities = 17/87 (19%), Positives = 22/87 (25%), Gaps = 7/87 (8%)

Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL------SDKRFTLSGGNLIINDP 263
            D+   C       P  +W K              P       +    T     ++    
Sbjct: 21  GDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRN 80

Query: 264 RQVEDRGSYHCKASNKFGSIISESVQL 290
              ED G Y C A N  G     S  L
Sbjct: 81  VTFEDAGEYTCLAGNSIGI-SFHSAWL 106

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 53.4 bits (127), Expect = 2e-09
 Identities = 17/87 (19%), Positives = 22/87 (25%), Gaps = 7/87 (8%)

Query: 483 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL------SDKRFTLSGGNLIINDP 536
            D+   C       P  +W K              P       +    T     ++    
Sbjct: 21  GDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRN 80

Query: 537 RQVEDRGSYHCKASNKFGSIISESVQL 563
              ED G Y C A N  G     S  L
Sbjct: 81  VTFEDAGEYTCLAGNSIGI-SFHSAWL 106

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 56.1 bits (134), Expect = 3e-10
 Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 5/81 (6%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-----YFENFNRILTIPNVKVEDQGEY 739
             G   R +C   GYP P   W +  +P+  +      Y E  N  LTI  V  +D  +Y
Sbjct: 21  VEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKY 80

Query: 740 ICRASNDRSALESSVTISIQA 760
            C+A N       +  + ++ 
Sbjct: 81  TCKAVNSLGEATCTAELLVET 101

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 47.2 bits (111), Expect = 3e-07
 Identities = 26/108 (24%), Positives = 36/108 (33%), Gaps = 15/108 (13%)

Query: 456 PNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANL 515
           P+VK   PYF K   D+          +     C   GYP+P   WFK+D          
Sbjct: 5   PHVK---PYFTKTILDMEVVEG-----SAARFDCKVEGYPDPEVMWFKDDNPVKE----- 51

Query: 516 IDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
                   +   G   +       +D   Y CKA N  G     + +L
Sbjct: 52  -SRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATC-TAEL 97

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 45.7 bits (107), Expect = 1e-06
 Identities = 23/101 (22%), Positives = 32/101 (31%), Gaps = 12/101 (11%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           PYF K   D+          +     C   GYP+P   WFK+D                 
Sbjct: 9   PYFTKTILDMEVVEG-----SAARFDCKVEGYPDPEVMWFKDDNPVKE------SRHFQI 57

Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
            +   G   +       +D   Y CKA N  G     + +L
Sbjct: 58  DYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATC-TAEL 97

>d1xpha1 d.169.1.1 (A:265-394) DC-SIGNR (DC-SIGN related receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: DC-SIGNR (DC-SIGN related receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (134), Expect = 4e-10
 Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 7/131 (5%)

Query: 28  RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQ 87
            CP+ W  ++ +CY    S  +  +D+   C+ + + L  +  A+E  F+  Q    +  
Sbjct: 3   HCPKDWTFFQGNCYFMSNSQ-RNWHDSVTACQEVRAQLVVIKTAEEQNFLQLQTSRSNRF 61

Query: 88  RRKWYFGGTQQSPNLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERV 147
                    Q+    WV+    + +        EP ++   D   +S        G+   
Sbjct: 62  SWMGLSDLNQEGTWQWVDGSPLSPSFQRYWNSGEPNNSGNEDCAEFS------GSGWNDN 115

Query: 148 TGMEPLLFICE 158
                  +IC+
Sbjct: 116 RCDVDNYWICK 126

>d1e87a_ d.169.1.1 (A:) CD69 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: CD69
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (133), Expect = 5e-10
 Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 6/84 (7%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
           C + WV Y+  CY       ++   A+  C    + LA ++   +  F+      ++   
Sbjct: 3   CSEDWVGYQRKCYFISTVK-RSWTSAQNACSEHGATLAVIDSEKDMNFLKRYAGREE--- 58

Query: 89  RKWYFGGTQQSPNLWVNEDGTNLN 112
              + G  ++  + W   +G   N
Sbjct: 59  --HWVGLKKEPGHPWKWSNGKEFN 80

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.4 bits (132), Expect = 5e-10
 Identities = 21/101 (20%), Positives = 33/101 (32%), Gaps = 13/101 (12%)

Query: 673 PNNFPKTFPEAPKAGDKVRLECVAF-GYPVPSYNWTRRGSPLPRNAY------------F 719
           P+    + P +   G++  L C    G P   Y+W + G  +                  
Sbjct: 3   PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTI 62

Query: 720 ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQA 760
           +  +  L    V   D GEY C+A N       S    + A
Sbjct: 63  DPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDA 103

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.9 bits (97), Expect = 2e-05
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 210 NDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL--SGGNLIINDPRQV 266
           N   L+C    G P   Y WFK+        A       +  FT+    G+LI +     
Sbjct: 18  NRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPV-TA 76

Query: 267 EDRGSYHCKASNKFGSII-SESVQL 290
            D G Y+C+A N +G+ + SE+  +
Sbjct: 77  FDSGEYYCQAQNGYGTAMRSEAAHM 101

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.9 bits (97), Expect = 2e-05
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 483 NDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL--SGGNLIINDPRQV 539
           N   L+C    G P   Y WFK+        A       +  FT+    G+LI +     
Sbjct: 18  NRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPV-TA 76

Query: 540 EDRGSYHCKASNKFGSII-SESVQL 563
            D G Y+C+A N +G+ + SE+  +
Sbjct: 77  FDSGEYYCQAQNGYGTAMRSEAAHM 101

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (129), Expect = 7e-10
 Identities = 15/82 (18%), Positives = 34/82 (41%), Gaps = 7/82 (8%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF------ENFNRILTIPNVKVEDQGE 738
             G  V+L C   G   P   W + G+ +            +++   L++ +V+  D G 
Sbjct: 9   SQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGR 68

Query: 739 YICRASNDR-SALESSVTISIQ 759
           Y C+  +   + +   V ++++
Sbjct: 69  YWCQVEDGGETEISQPVWLTVE 90

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 5e-09
 Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 10/96 (10%)

Query: 195 QPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS 254
            P  +     +      + L+C   G   P  +W K+  V        +D L        
Sbjct: 2   APVKLTVSQGQ-----PVKLNCSVEGMEEPDIQWVKDGAVVQN-----LDQLYIPVSEQH 51

Query: 255 GGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
               +     +  D G Y C+  +   + IS+ V L
Sbjct: 52  WIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWL 87

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 5e-09
 Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 10/96 (10%)

Query: 468 QPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS 527
            P  +     +      + L+C   G   P  +W K+  V        +D L        
Sbjct: 2   APVKLTVSQGQ-----PVKLNCSVEGMEEPDIQWVKDGAVVQN-----LDQLYIPVSEQH 51

Query: 528 GGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
               +     +  D G Y C+  +   + IS+ V L
Sbjct: 52  WIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWL 87

>d1qo3c_ d.169.1.1 (C:) NK cell receptor {Mouse (Mus musculus), ly49-a [TaxId: 10090]} Length = 133

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: NK cell receptor
species: Mouse (Mus musculus), ly49-a [TaxId: 10090]

 Score = 55.3 bits (132), Expect = 8e-10
 Identities = 24/130 (18%), Positives = 37/130 (28%), Gaps = 14/130 (10%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
              +W  Y   CY FV    KT +  K  C+S    L  ++D DE  F+   +       
Sbjct: 14  DKVYWFCYGMKCYYFVMDR-KTWSGCKQTCQSSSLSLLKIDDEDELKFLQLVVPSDSC-- 70

Query: 89  RKWYFGGTQQSPNLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVT 148
             W           W   D           L     N++           L +   +   
Sbjct: 71  --WVGLSYDNKKKDWAWIDNRPSK----LALNTRKYNIRDGGCML-----LSKTRLDNGN 119

Query: 149 GMEPLLFICE 158
             +  + IC 
Sbjct: 120 CDQVFICICG 129

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (130), Expect = 9e-10
 Identities = 17/87 (19%), Positives = 25/87 (28%), Gaps = 11/87 (12%)

Query: 692 LECVAFGYPVPSYNWTRRGSPLP-----------RNAYFENFNRILTIPNVKVEDQGEYI 740
           +     G P PS  W   GS L              A     +  L +      + G Y 
Sbjct: 20  IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79

Query: 741 CRASNDRSALESSVTISIQAEPNFTIP 767
             A+N      +S+  +    P    P
Sbjct: 80  LLAANPFGQASASIMAAFMDNPFEFNP 106

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 8e-05
 Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 3/85 (3%)

Query: 209 LNDITLSCYAGGYPNPSYEWFKEDY-VQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 267
           ++   +     G P PS  W      + +               T+  G L +N P    
Sbjct: 15  MHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQP-THV 73

Query: 268 DRGSYHCKASNKFGSIISESVQLAF 292
           + G+Y   A+N FG   S S+  AF
Sbjct: 74  NNGNYTLLAANPFGQ-ASASIMAAF 97

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 8e-05
 Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 3/85 (3%)

Query: 482 LNDITLSCYAGGYPNPSYEWFKEDY-VQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 540
           ++   +     G P PS  W      + +               T+  G L +N P    
Sbjct: 15  MHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQP-THV 73

Query: 541 DRGSYHCKASNKFGSIISESVQLAF 565
           + G+Y   A+N FG   S S+  AF
Sbjct: 74  NNGNYTLLAANPFGQ-ASASIMAAF 97

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (129), Expect = 1e-09
 Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 7/88 (7%)

Query: 679 TFPEAPKAGDKVRLEC------VAFGYPVPSYNWTRRGSPLPR-NAYFENFNRILTIPNV 731
            F +         L C            +P   W +   PL   N +F      L + NV
Sbjct: 6   IFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNV 65

Query: 732 KVEDQGEYICRASNDRSALESSVTISIQ 759
             + +G Y C AS      +  +T  I+
Sbjct: 66  AEKHRGNYTCHASYTYLGKQYPITRVIE 93

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 8e-04
 Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 19/90 (21%)

Query: 210 NDITLSC------YAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDP 263
            D  L C             P  +W+K+              L +  F+     LI+ + 
Sbjct: 15  GDGGLVCPYMEFFKNENNELPKLQWYKDCKPL---------LLDNIHFSGVKDRLIVMNV 65

Query: 264 RQVEDRGSYHCKASNKFGSI---ISESVQL 290
              + RG+Y C AS  +      I+  ++ 
Sbjct: 66  -AEKHRGNYTCHASYTYLGKQYPITRVIEF 94

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 8e-04
 Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 19/90 (21%)

Query: 483 NDITLSC------YAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDP 536
            D  L C             P  +W+K+              L +  F+     LI+ + 
Sbjct: 15  GDGGLVCPYMEFFKNENNELPKLQWYKDCKPL---------LLDNIHFSGVKDRLIVMNV 65

Query: 537 RQVEDRGSYHCKASNKFGSI---ISESVQL 563
              + RG+Y C AS  +      I+  ++ 
Sbjct: 66  -AEKHRGNYTCHASYTYLGKQYPITRVIEF 94

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 5e-09
 Identities = 22/100 (22%), Positives = 33/100 (33%), Gaps = 12/100 (12%)

Query: 673 PNNFPKTFPEAPKAGDKVRLECVAF-GYPVPSYNWTRRGSPLPRNA-----------YFE 720
           P+      P +   G++  L C    G P   Y W + G  +P N               
Sbjct: 3   PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLN 62

Query: 721 NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQA 760
                L    +   D GEY C A N      +S  + ++A
Sbjct: 63  PTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA 102

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 7e-04
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 2/83 (2%)

Query: 210 NDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 268
           N   L+C    G P   Y WFK+  V      +     +           ++ DP    D
Sbjct: 18  NRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASD 77

Query: 269 RGSYHCKASNKFGSII-SESVQL 290
            G Y C+A N +G+ + S +V++
Sbjct: 78  TGEYSCEARNGYGTPMTSNAVRM 100

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 7e-04
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 2/83 (2%)

Query: 483 NDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 541
           N   L+C    G P   Y WFK+  V      +     +           ++ DP    D
Sbjct: 18  NRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASD 77

Query: 542 RGSYHCKASNKFGSII-SESVQL 563
            G Y C+A N +G+ + S +V++
Sbjct: 78  TGEYSCEARNGYGTPMTSNAVRM 100

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 7e-09
 Identities = 17/107 (15%), Positives = 32/107 (29%), Gaps = 33/107 (30%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAY-------------------------- 718
            AG+K+RL+    G P P+  W +  +   +                             
Sbjct: 22  VAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCET 81

Query: 719 -------FENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 758
                        I T+   + ED+G Y     N     + ++T+ +
Sbjct: 82  EGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 128

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 2e-04
 Identities = 17/152 (11%), Positives = 35/152 (23%), Gaps = 47/152 (30%)

Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTD 471
            AG+K+RL+    G P P+  W +  +   +       +     P        ++     
Sbjct: 22  VAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDA----PEDTGDSDEWVFDKKL 77

Query: 472 VVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNL 531
           +     +  +      S                                           
Sbjct: 78  LCETEGRVRVETTKDRSI-----------------------------------------F 96

Query: 532 IINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
            +    + ED G Y     N  G     ++ +
Sbjct: 97  TVEGA-EKEDEGVYTVTVKNPVGE-DQVNLTV 126

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 14/104 (13%), Positives = 26/104 (25%), Gaps = 25/104 (24%)

Query: 210 NDITLSCYAGGYPNPSYEWFKED--------------------YVQDRLVANLIDPLSDK 249
           N + L     G P P+  W K                        +      L+     +
Sbjct: 25  NKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGR 84

Query: 250 RFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
               +  +     +    + ED G Y     N  G     ++ +
Sbjct: 85  VRVETTKDRSIFTVEGA-EKEDEGVYTVTVKNPVGE-DQVNLTV 126

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (122), Expect = 9e-09
 Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 9/93 (9%)

Query: 679 TFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNR---------ILTIP 729
           TF E+P +     +     G P P+  W   G+ L  + Y                L + 
Sbjct: 8   TFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLD 67

Query: 730 NVKVEDQGEYICRASNDRSALESSVTISIQAEP 762
           N    + G+Y   A N+    E  ++      P
Sbjct: 68  NPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWP 100

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (119), Expect = 2e-08
 Identities = 17/81 (20%), Positives = 26/81 (32%), Gaps = 11/81 (13%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA------YFENFNRILTIPNVKVEDQGE 738
             G++V LEC        +  W + G  +            E    IL I      D  E
Sbjct: 13  YCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAE 71

Query: 739 YICRASNDRSALESSVTISIQ 759
           Y    +      +SS  +S+ 
Sbjct: 72  YSVMTTGG----QSSAKLSVD 88

>d1uv0a_ d.169.1.1 (A:) Pancreatitis-associated protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 140

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Pancreatitis-associated protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (122), Expect = 2e-08
 Identities = 23/140 (16%), Positives = 41/140 (29%), Gaps = 9/140 (6%)

Query: 27  LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDP 86
           +RCP+    Y   CY    SP    +      K    +L +V    E  F+   +     
Sbjct: 3   IRCPKGSKAYGSHCYALFLSPKSWTDADLACQKRPSGNLVSVLSGAEGSFVSSLVKSIGN 62

Query: 87  QRRKWYFGGT------QQSPNLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLK 140
                + G        + +   W       +N       P    +      + S S +  
Sbjct: 63  SYSYVWIGLHDPTQGTEPNGEGWEWSSSDVMNYFAWERNP-STISSPGHCASLSRSTAFL 121

Query: 141 RWGFERVTGMEPLLFICEAS 160
           RW          L ++C+ +
Sbjct: 122 RWKDYNCN--VRLPYVCKFT 139

>d1kg0c_ d.169.1.1 (C:) EBV gp42 {Epstein-Barr virus [TaxId: 10376]} Length = 136

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: EBV gp42
species: Epstein-Barr virus [TaxId: 10376]

 Score = 51.0 bits (121), Expect = 3e-08
 Identities = 15/132 (11%), Positives = 28/132 (21%), Gaps = 18/132 (13%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSD-LANVNDADEHGFIMYQLFWQDPQ 87
             ++   Y+  C+ F K    T N     C              D    +   L   +  
Sbjct: 19  TREYTFSYKGCCFYFTKKK-HTWNGCFQACAEKYPCTYFYGPTPDILPVVTRNLNAIES- 76

Query: 88  RRKWYFGGTQQSPNLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERV 147
               + G  +     W + DG                  Q      ++            
Sbjct: 77  ---LWVGVYRVGEGNWTSLDGGTFK------------VYQIFGSHCTYVSKFSTVPVSHH 121

Query: 148 TGMEPLLFICEA 159
                   +C +
Sbjct: 122 ECSFLKPCLCVS 133

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 49.1 bits (116), Expect = 5e-08
 Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 7/81 (8%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENF------NRILTIPNVKVEDQGE 738
           KAGD   + C+    P+   N+ + G  +  N             + L       ED+G 
Sbjct: 16  KAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGV 75

Query: 739 YICRASNDR-SALESSVTISI 758
           Y C   N      + S+ +++
Sbjct: 76  YTCEVDNGVGKPQKHSLKLTV 96

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 44.5 bits (104), Expect = 2e-06
 Identities = 18/101 (17%), Positives = 31/101 (30%), Gaps = 12/101 (11%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           P ++ +              +   + C  G  P     +FK     +       +    +
Sbjct: 6   PQYVSKDMMAK-------AGDVTMIYCMYGSNPMGYPNYFKNGKDVN----GNPEDRITR 54

Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
               SG  L+       ED G Y C+  N  G     S++L
Sbjct: 55  HNRTSGKRLLFKTTLP-EDEGVYTCEVDNGVGKPQKHSLKL 94

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 44.5 bits (104), Expect = 2e-06
 Identities = 18/101 (17%), Positives = 31/101 (30%), Gaps = 12/101 (11%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
           P ++ +              +   + C  G  P     +FK     +       +    +
Sbjct: 6   PQYVSKDMMAK-------AGDVTMIYCMYGSNPMGYPNYFKNGKDVN----GNPEDRITR 54

Query: 523 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
               SG  L+       ED G Y C+  N  G     S++L
Sbjct: 55  HNRTSGKRLLFKTTLP-EDEGVYTCEVDNGVGKPQKHSLKL 94

>d1hq8a_ d.169.1.1 (A:) NK cell-activating receptor nkg2d {Mouse (Mus musculus) [TaxId: 10090]} Length = 123

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: NK cell-activating receptor nkg2d
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.1 bits (116), Expect = 1e-07
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 7/84 (8%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
           CP +W+ +R++CY+F     KT N ++ +C S +S L  +   +E  F+     +     
Sbjct: 6   CPNNWICHRNNCYQFFNEE-KTWNQSQASCLSQNSSLLKIYSKEEQDFLKLVKSYH---- 60

Query: 89  RKWYFGGTQQSPNLWVNEDGTNLN 112
             W       +   W  EDG++L+
Sbjct: 61  --WMGLVQIPANGSWQWEDGSSLS 82

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (114), Expect = 1e-07
 Identities = 21/103 (20%), Positives = 33/103 (32%), Gaps = 10/103 (9%)

Query: 188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 247
           R P+F++   +V  +          T  C A G        + +           I   S
Sbjct: 1   RTPHFLR-IQNVEVNAG-----QFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTS 54

Query: 248 DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
            +RF  S     + +     D G Y C    + G  IS   +L
Sbjct: 55  SRRFIAS---FNVVNT-TKRDAGKYRCMIRTEGGVGISNYAEL 93

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (114), Expect = 1e-07
 Identities = 21/103 (20%), Positives = 33/103 (32%), Gaps = 10/103 (9%)

Query: 461 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 520
           R P+F++   +V  +          T  C A G        + +           I   S
Sbjct: 1   RTPHFLR-IQNVEVNAG-----QFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTS 54

Query: 521 DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
            +RF  S     + +     D G Y C    + G  IS   +L
Sbjct: 55  SRRFIAS---FNVVNT-TKRDAGKYRCMIRTEGGVGISNYAEL 93

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 3e-07
 Identities = 13/83 (15%), Positives = 24/83 (28%), Gaps = 8/83 (9%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRG-------SPLPRNAYFENFNRILTIPNVKVEDQG 737
            AG     +C A G  V       +G           +      F     + N    D G
Sbjct: 14  NAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAG 73

Query: 738 EYICRASNDR-SALESSVTISIQ 759
           +Y C    +    + +   + ++
Sbjct: 74  KYRCMIRTEGGVGISNYAELVVK 96

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 2e-07
 Identities = 15/75 (20%), Positives = 22/75 (29%), Gaps = 6/75 (8%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLP-----RNAYFENFNRILTIPNVKVEDQGEY 739
             G K+RL             W + G  +               R LTI    + D   Y
Sbjct: 19  SKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAY 77

Query: 740 ICRASNDRSALESSV 754
            C    ++ + E  V
Sbjct: 78  QCVVGGEKCSTELFV 92

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 1e-04
 Identities = 13/95 (13%), Positives = 25/95 (26%), Gaps = 15/95 (15%)

Query: 190 PYFIKQPTDVVFDLSKRSIL--NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 247
             F K+            +   + I L+       +   +W K         +  I    
Sbjct: 6   TAFQKKLEPAY------QVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESI 58

Query: 248 DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGS 282
             + TL+           + D  +Y C    +  S
Sbjct: 59  GAKRTLTISQ------CSLADDAAYQCVVGGEKCS 87

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 1e-04
 Identities = 13/95 (13%), Positives = 25/95 (26%), Gaps = 15/95 (15%)

Query: 463 PYFIKQPTDVVFDLSKRSIL--NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 520
             F K+            +   + I L+       +   +W K         +  I    
Sbjct: 6   TAFQKKLEPAY------QVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESI 58

Query: 521 DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGS 555
             + TL+           + D  +Y C    +  S
Sbjct: 59  GAKRTLTISQ------CSLADDAAYQCVVGGEKCS 87

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 47.3 bits (111), Expect = 2e-07
 Identities = 21/103 (20%), Positives = 32/103 (31%), Gaps = 12/103 (11%)

Query: 188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 247
           + P    QP +V+F  +     N   L C   G        +K+D               
Sbjct: 1   KYPVLKDQPAEVLFREN-----NPTVLECIIEGNDQGVKYSWKKDGKS------YNWQEH 49

Query: 248 DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
           +       G+L+   P+   D G Y C A    G   S  +  
Sbjct: 50  NAALRKDEGSLVFLRPQA-SDEGHYQCFAETPAGVASSRVISF 91

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 47.3 bits (111), Expect = 2e-07
 Identities = 21/103 (20%), Positives = 32/103 (31%), Gaps = 12/103 (11%)

Query: 461 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 520
           + P    QP +V+F  +     N   L C   G        +K+D               
Sbjct: 1   KYPVLKDQPAEVLFREN-----NPTVLECIIEGNDQGVKYSWKKDGKS------YNWQEH 49

Query: 521 DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
           +       G+L+   P+   D G Y C A    G   S  +  
Sbjct: 50  NAALRKDEGSLVFLRPQA-SDEGHYQCFAETPAGVASSRVISF 91

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 42.7 bits (99), Expect = 8e-06
 Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 5/79 (6%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRG----SPLPRNAYFENFNRILTIPNVKVEDQGEYI 740
           +  +   LEC+  G         ++     +    NA        L     +  D+G Y 
Sbjct: 15  RENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQ 74

Query: 741 CRASNDRSALESSVTISIQ 759
           C A        SS  IS +
Sbjct: 75  CFAETPAGV-ASSRVISFR 92

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 3e-07
 Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 15/94 (15%)

Query: 667 FQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRIL 726
             +   P N+  T+PE      +    C A+G P+P     +                I 
Sbjct: 5   LDERDCPGNW--TWPE----NSQQTPMCQAWGNPLPELKCLK---------DGTFPLPIG 49

Query: 727 TIPNVKVEDQGEYICRASNDRSALESSVTISIQA 760
               V  + +G Y+CRA + +  +   VT+++ +
Sbjct: 50  ESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 83

>d1t8da1 d.169.1.1 (A:1-143) Low affinity immunoglobulin epsilon Fc receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 143

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Low affinity immunoglobulin epsilon Fc receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 6e-07
 Identities = 21/130 (16%), Positives = 47/130 (36%), Gaps = 9/130 (6%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
           CP+ W+ ++  CY F K   K    A+  C  ++  L +++  +E  F+           
Sbjct: 8   CPEKWINFQRKCYYFGKGT-KQWVHARYACDDMEGQLVSIHSPEEQDFLTKHASHTGSWI 66

Query: 89  RKWYFGGTQQSPNLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVT 148
                         ++  DG++++  + A     + +   D +    S    RW      
Sbjct: 67  GLRN----LDLKGEFIWVDGSHVDYSNWAPGEPTSRSQGEDCVMMRGS---GRWNDAFCD 119

Query: 149 GMEPLLFICE 158
             +   ++C+
Sbjct: 120 -RKLGAWVCD 128

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.7 bits (107), Expect = 7e-07
 Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 4/79 (5%)

Query: 685 KAGDKVRLECVAFGYPVPSYNW----TRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYI 740
           KAG    LE    G P P+  W    +            ++    +  P+ K  D G Y 
Sbjct: 15  KAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYK 74

Query: 741 CRASNDRSALESSVTISIQ 759
            +  N+    E+   + +Q
Sbjct: 75  LKVKNELGEDEAIFEVIVQ 93

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.7 bits (86), Expect = 5e-04
 Identities = 17/101 (16%), Positives = 27/101 (26%), Gaps = 13/101 (12%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           P  +     +              L     G P+P+  W   D         L+D  S  
Sbjct: 3   PKILTASRKIKIKAGF-----THNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSST 57

Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
                    I     +  D G+Y  K  N+ G       ++
Sbjct: 58  TS-------IFFPSAKRADSGNYKLKVKNELGE-DEAIFEV 90

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.7 bits (86), Expect = 5e-04
 Identities = 17/101 (16%), Positives = 27/101 (26%), Gaps = 13/101 (12%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
           P  +     +              L     G P+P+  W   D         L+D  S  
Sbjct: 3   PKILTASRKIKIKAGF-----THNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSST 57

Query: 523 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
                    I     +  D G+Y  K  N+ G       ++
Sbjct: 58  TS-------IFFPSAKRADSGNYKLKVKNELGE-DEAIFEV 90

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 8e-07
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 6/76 (7%)

Query: 687 GDKVRLECVAF-GYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASN 745
           G+ + L C ++   P+    + +      ++  F   +   +IP       G+Y C  + 
Sbjct: 15  GETIVLRCHSWKDKPLVKVTFFQN----GKSKKFSRSDPNFSIPQANHSHSGDYHCTGNI 70

Query: 746 DRSALES-SVTISIQA 760
             +   S  VTI++QA
Sbjct: 71  GYTLYSSKPVTITVQA 86

>d1qdda_ d.169.1.1 (A:) Lithostathine, inhibitor of stone formation {Human (Homo sapiens) [TaxId: 9606]} Length = 144

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Lithostathine, inhibitor of stone formation
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 1e-06
 Identities = 22/134 (16%), Positives = 45/134 (33%), Gaps = 6/134 (4%)

Query: 27  LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLAN--VNDADEHGFIMYQLFWQ 84
           + CP+    YR  CY F +   +T  DA L C++++S      +  A+            
Sbjct: 12  ISCPEGTNAYRSYCYYFNEDR-ETWVDADLYCQNMNSGNLVSVLTQAEGAFVASLIKESG 70

Query: 85  DPQRRKWYFGGTQQSPNLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGF 144
                 W      +    W    G+      +  +  P+       ++ + S   ++W  
Sbjct: 71  TDDFNVWIGLHDPKKNRAWHWSSGSL-VSYKSWGIGAPSSVNPGYCVSLTSSTGFQKWKD 129

Query: 145 ERVTGMEPLLFICE 158
                 +   F+C+
Sbjct: 130 VPCE--DKFSFVCK 141

>d1wmza_ d.169.1.1 (A:) Lectin CEL-I {Cucumaria echinata [TaxId: 40245]} Length = 140

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Lectin CEL-I
species: Cucumaria echinata [TaxId: 40245]

 Score = 46.4 bits (108), Expect = 1e-06
 Identities = 29/142 (20%), Positives = 51/142 (35%), Gaps = 12/142 (8%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSL-------DSDLANVNDADEHGFIMYQL 81
           CP  W    D CYRF  +   T  +A   C S         SDL +V+ A E  ++    
Sbjct: 3   CPTDWEAEGDHCYRFFNTL-TTWENAHHECVSYSCSTLNVRSDLVSVHSAAEQAYVFNYW 61

Query: 82  FWQDPQRRKWYFGGT-QQSPNLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLK 140
              D Q  + + G   + +   ++  DG+ +     A       N   DY  +  ++   
Sbjct: 62  RGIDSQAGQLWIGLYDKYNEGDFIWTDGSKVGYTKWAGGQPDNWNNAEDYGQFRHTEGGA 121

Query: 141 RWGFERVTGMEPLLFICEASIQ 162
            W            ++C+ + +
Sbjct: 122 -WNDNSAA--AQAKYMCKLTFE 140

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 2e-06
 Identities = 14/90 (15%), Positives = 23/90 (25%), Gaps = 4/90 (4%)

Query: 681 PEAPKAGDKVRLECVAFG---YPVPSYNWTRRGSPLPRNAY-FENFNRILTIPNVKVEDQ 736
           P     G ++ L C   G       +    R    L R     E      T+   +    
Sbjct: 13  PSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHG 72

Query: 737 GEYICRASNDRSALESSVTISIQAEPNFTI 766
            ++ CR   D       +  +  A      
Sbjct: 73  AQFSCRTELDLRPQGLELFENTSAPYQLQT 102

>d1dv8a_ d.169.1.1 (A:) H1 subunit of the asialoglycoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: H1 subunit of the asialoglycoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (106), Expect = 2e-06
 Identities = 30/132 (22%), Positives = 47/132 (35%), Gaps = 9/132 (6%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
           CP +WV++  SCY F +S  K   DA   C+  D+ L  V   +E  F+ + +   +   
Sbjct: 1   CPVNWVEHERSCYWFSRSG-KAWADADNYCRLEDAHLVVVTSWEEQKFVQHHIGPVNTWM 59

Query: 89  RKWYFGGTQQSPNLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFS--QSLKRWGFER 146
                 G       W   DGT+       + PE  D+     L              +  
Sbjct: 60  GLHDQNGP------WKWVDGTDYETGFKNWRPEQPDDWYGHGLGGGEDCAHFTDDGRWND 113

Query: 147 VTGMEPLLFICE 158
                P  ++CE
Sbjct: 114 DVCQRPYRWVCE 125

>d1c3ab_ d.169.1.1 (B:) Snake coagglutinin beta chain {Habu snake (Trimeresurus flavoviridis), flavocetin-A [TaxId: 88087]} Length = 125

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Snake coagglutinin beta chain
species: Habu snake (Trimeresurus flavoviridis), flavocetin-A [TaxId: 88087]

 Score = 45.5 bits (106), Expect = 2e-06
 Identities = 15/86 (17%), Positives = 25/86 (29%), Gaps = 3/86 (3%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
           CP  W  Y + CY+  +       DA+  C         V+                  +
Sbjct: 4   CPLGWSSYDEHCYQVFQQK-MNWEDAEKFCTQQHKGSHLVSFHSSEEVDFVTSKTFPILK 62

Query: 89  RKWYFGGT--QQSPNLWVNEDGTNLN 112
             + + G     +       DGT L+
Sbjct: 63  YDFVWIGLSNVWNECTKEWSDGTKLD 88

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 3e-06
 Identities = 20/86 (23%), Positives = 27/86 (31%), Gaps = 11/86 (12%)

Query: 685 KAGDKVRLECVAFGYPV-PSYNWTRRGSPLPRNAYFENFNR---------ILTIPNVKVE 734
            AGD   LEC        P   W +              +          IL    V   
Sbjct: 16  LAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPN 75

Query: 735 DQGEYICRASNDRSALES-SVTISIQ 759
           D G Y C A+   + +ES S T+ + 
Sbjct: 76  DNGSYRCSANFQSNLIESHSTTLYVT 101

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 4e-05
 Identities = 22/102 (21%), Positives = 33/102 (32%), Gaps = 8/102 (7%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPN-PSYEWFKEDYVQDRLVANLIDPLSD 248
             +IK+ ++           +   L C      N P   W K +      V       S 
Sbjct: 4   QLYIKRQSEHSI-----LAGDPFELECPVKYCANRPHVTWCKLN--GTTCVKLEDRQTSW 56

Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
           K        ++  +P    D GSY C A+ +   I S S  L
Sbjct: 57  KEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTL 98

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 4e-05
 Identities = 22/102 (21%), Positives = 33/102 (32%), Gaps = 8/102 (7%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPN-PSYEWFKEDYVQDRLVANLIDPLSD 521
             +IK+ ++           +   L C      N P   W K +      V       S 
Sbjct: 4   QLYIKRQSEHSI-----LAGDPFELECPVKYCANRPHVTWCKLN--GTTCVKLEDRQTSW 56

Query: 522 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
           K        ++  +P    D GSY C A+ +   I S S  L
Sbjct: 57  KEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTL 98

>d3bdwa1 d.169.1.1 (A:59-179) CD94 {Human (Homo sapiens) [TaxId: 9606]} Length = 121

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: CD94
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 4e-06
 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 7/84 (8%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
           C + WV YR +CY       KT N+++  C S  S L  + +           F    Q+
Sbjct: 3   CQEKWVGYRCNCYFISSEQ-KTWNESRHLCASQKSSLLQLQNT------DELDFMSSSQQ 55

Query: 89  RKWYFGGTQQSPNLWVNEDGTNLN 112
             W      +    W+ E+G+ L+
Sbjct: 56  FYWIGLSYSEEHTAWLWENGSALS 79

>d1jzna_ d.169.1.1 (A:) Galactose-specific C-type lectin {Western diamondback rattlesnake (Crotalus atrox) [TaxId: 8730]} Length = 135

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Galactose-specific C-type lectin
species: Western diamondback rattlesnake (Crotalus atrox) [TaxId: 8730]

 Score = 44.8 bits (104), Expect = 5e-06
 Identities = 17/134 (12%), Positives = 36/134 (26%), Gaps = 6/134 (4%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
           CP  W+     CY+      KT  DA++ C+         +       +    +  D  +
Sbjct: 3   CPLDWLPMNGLCYKIFNQL-KTWEDAEMFCRKYKPGCHLASFHRYGESLEIAEYISDYHK 61

Query: 89  RKWYFGGTQQSPN---LWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFE 145
            +       +       W   D +  + L            +   +        + W  +
Sbjct: 62  GQENVWIGLRDKKKDFSWEWTDRSCTDYLTWDKNQPDHYQNKEFCVELVSLTGYRLWNDQ 121

Query: 146 RVTGMEPLLFICEA 159
                    F+C+ 
Sbjct: 122 VCE--SKDAFLCQC 133

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 5e-06
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 6/75 (8%)

Query: 687 GDKVRLECVAFGY-PVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASN 745
            D + L C ++    +    + +      ++  + + N    IP   ++D G Y CR   
Sbjct: 17  EDPIHLRCHSWKNTALHKVTYLQN----GKDRKYFHHNSDFHIPKATLKDSGSYFCRGLV 72

Query: 746 DRSALES-SVTISIQ 759
               + S +V I+I 
Sbjct: 73  GSKNVSSETVNITIT 87

>d2afpa_ d.169.1.1 (A:) Type II antifreeze protein {Sea raven (Hemitripterus americanus) [TaxId: 8094]} Length = 129

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Type II antifreeze protein
species: Sea raven (Hemitripterus americanus) [TaxId: 8094]

 Score = 43.9 bits (102), Expect = 7e-06
 Identities = 26/133 (19%), Positives = 41/133 (30%), Gaps = 10/133 (7%)

Query: 28  RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQ 87
            CP  W    D C  +  +   T   A+ NC  L   LA+++  +EH F           
Sbjct: 6   NCPAGWQPLGDRCIYYETTA-MTWALAETNCMKLGGHLASIHSQEEHSF-----IQTLNA 59

Query: 88  RRKWYFGGTQQSPNLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERV 147
              W  G        W   DGT +N     +     D+V         + + + W     
Sbjct: 60  GVVWIGGSACLQAGAWTWSDGTPMNFRS--WCSTKPDDVLAACCMQMTAAADQCWDDLPC 117

Query: 148 TGMEPLLFICEAS 160
                   +C  +
Sbjct: 118 P--ASHKSVCAMT 128

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 7e-06
 Identities = 19/92 (20%), Positives = 28/92 (30%), Gaps = 8/92 (8%)

Query: 679 TFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF--------ENFNRILTIPN 730
              E P+   +  +E V  G P P+ +W   G PL  +           E     L    
Sbjct: 9   VSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNK 68

Query: 731 VKVEDQGEYICRASNDRSALESSVTISIQAEP 762
               + G Y   A N       ++      EP
Sbjct: 69  PTHYNNGNYTLIAKNPLGTANQTINGHFLKEP 100

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.2 bits (100), Expect = 8e-06
 Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 12/87 (13%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENF------------NRILTIPNVK 732
              + ++L C   G+  P   W            + +             +  +T  +V 
Sbjct: 14  PENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVT 73

Query: 733 VEDQGEYICRASNDRSALESSVTISIQ 759
            +D GEY C  S +       V+I + 
Sbjct: 74  RKDNGEYTCMVSEEGGQNYGEVSIHLT 100

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.7 bits (91), Expect = 1e-04
 Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 4/84 (4%)

Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVA--NLIDPLSDKRFTLSGGNLIINDPRQVE 267
             I L+C   G+ +P  EW         LV   + I      R T S   +  +   + +
Sbjct: 17  ESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTR-K 75

Query: 268 DRGSYHCKASNKFGSIISE-SVQL 290
           D G Y C  S + G    E S+ L
Sbjct: 76  DNGEYTCMVSEEGGQNYGEVSIHL 99

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.7 bits (91), Expect = 1e-04
 Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 4/84 (4%)

Query: 483 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVA--NLIDPLSDKRFTLSGGNLIINDPRQVE 540
             I L+C   G+ +P  EW         LV   + I      R T S   +  +   + +
Sbjct: 17  ESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTR-K 75

Query: 541 DRGSYHCKASNKFGSIISE-SVQL 563
           D G Y C  S + G    E S+ L
Sbjct: 76  DNGEYTCMVSEEGGQNYGEVSIHL 99

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 9e-06
 Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 5/76 (6%)

Query: 686 AGDKVRLECVA-FGYPVPSYNWTR-RGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRA 743
            GD V L C         + +W   + +     + +    R L + +V++ D G Y C  
Sbjct: 20  PGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYR 79

Query: 744 SNDRSALESSVTISIQ 759
           +        +V + + 
Sbjct: 80  AG---RPAGTVHLLVD 92

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 2e-04
 Identities = 16/103 (15%), Positives = 28/103 (27%), Gaps = 13/103 (12%)

Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 246
           PR     +    V+  L   S+              N +  W                  
Sbjct: 3   PRRCPAQEVARGVLTSLPGDSVTLTCPGVE---PEDNATVHWVLRKPAAGS--------- 50

Query: 247 SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQ 289
              R+   G  L++    Q+ D G+Y C  + +    +   V 
Sbjct: 51  HPSRWAGMGRRLLLRSV-QLHDSGNYSCYRAGRPAGTVHLLVD 92

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 15/102 (14%), Positives = 27/102 (26%), Gaps = 13/102 (12%)

Query: 461 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 520
           R     +    V+  L   S+              N +  W                   
Sbjct: 4   RRCPAQEVARGVLTSLPGDSVTLTCPGVE---PEDNATVHWVLRKPAAGS---------H 51

Query: 521 DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQ 562
             R+   G  L++    Q+ D G+Y C  + +    +   V 
Sbjct: 52  PSRWAGMGRRLLLRSV-QLHDSGNYSCYRAGRPAGTVHLLVD 92

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 1e-05
 Identities = 10/92 (10%), Positives = 21/92 (22%), Gaps = 16/92 (17%)

Query: 685 KAGDKVRLECVAFGYPVP----------------SYNWTRRGSPLPRNAYFENFNRILTI 728
             G  +       G  +                 S            +   + +   L I
Sbjct: 17  TVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHI 76

Query: 729 PNVKVEDQGEYICRASNDRSALESSVTISIQA 760
            + +    G Y C  S       S+  +++  
Sbjct: 77  TDAQPAFTGGYRCEVSTKDKFDCSNFNLTVHE 108

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 1e-05
 Identities = 25/107 (23%), Positives = 32/107 (29%), Gaps = 13/107 (12%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPN---PSYEWFKEDYVQDRLVANLIDPL 246
             F+ +P D    +        IT S    G      P  +WFK  +V           L
Sbjct: 5   GLFVMRPQDGEVTVGG-----SITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQL 59

Query: 247 SDKRFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
            D     S      L I D  Q    G Y C+ S K       +  L
Sbjct: 60  HDSYDRASKVYLFELHITDA-QPAFTGGYRCEVSTKDKF-DCSNFNL 104

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 1e-05
 Identities = 25/107 (23%), Positives = 32/107 (29%), Gaps = 13/107 (12%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPN---PSYEWFKEDYVQDRLVANLIDPL 519
             F+ +P D    +        IT S    G      P  +WFK  +V           L
Sbjct: 5   GLFVMRPQDGEVTVGG-----SITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQL 59

Query: 520 SDKRFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
            D     S      L I D  Q    G Y C+ S K       +  L
Sbjct: 60  HDSYDRASKVYLFELHITDA-QPAFTGGYRCEVSTKDKF-DCSNFNL 104

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 1e-05
 Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 1/74 (1%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI-LTIPNVKVEDQGEYICRA 743
           K G    L+C         +   + G     +  +    R  L I N+   D G Y C +
Sbjct: 10  KHGGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLS 69

Query: 744 SNDRSALESSVTIS 757
                       ++
Sbjct: 70  EERVKNKTVFQVVA 83

>d1v7pb_ d.169.1.1 (B:) Snake coagglutinin beta chain {Snake (Echis multisquamatus), Ems16 [TaxId: 93050]} Length = 127

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Snake coagglutinin beta chain
species: Snake (Echis multisquamatus), Ems16 [TaxId: 93050]

 Score = 43.2 bits (100), Expect = 1e-05
 Identities = 11/86 (12%), Positives = 20/86 (23%), Gaps = 3/86 (3%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
           CP  W  +   CY+  +   K   +A+  C          +                  +
Sbjct: 1   CPLGWSSFDQHCYKVFEPV-KNWTEAEEICMQQHKGSRLASIHSSEEEAFVSKLASKALK 59

Query: 89  RKWYFGGT--QQSPNLWVNEDGTNLN 112
               + G         W   D    +
Sbjct: 60  FTSMWIGLNNPWKDCKWEWSDNARFD 85

>d1oz7a_ d.169.1.1 (A:) Snake coagglutinin alpha chain {Saw-scaled viper (Echis carinatus), echicetin [TaxId: 40353]} Length = 131

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Snake coagglutinin alpha chain
species: Saw-scaled viper (Echis carinatus), echicetin [TaxId: 40353]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 21/137 (15%), Positives = 43/137 (31%), Gaps = 9/137 (6%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS--LDSDLANVNDADEHGFIMYQLFWQDP 86
           CP  W      CY   K P KT ++A+  C     D  L ++    E   +   +     
Sbjct: 2   CPPGWSSNGVYCYMLFKEP-KTWDEAEKFCNKQGKDGHLLSIESKKEEILVDIVVSENIG 60

Query: 87  QRRKWYFGGTQQSPNLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFER 146
           +  K + G +++S     +   ++     + F          +          + W    
Sbjct: 61  KMYKIWTGLSERSKEQHCSSRWSD----GSFFRSYEIAIRYSECFVLEKQSVFRTWVATP 116

Query: 147 VTGMEPLLFICEASIQK 163
                   F+C+  + +
Sbjct: 117 CE--NTFPFMCKYPVPR 131

>d1j34b_ d.169.1.1 (B:) Snake coagglutinin beta chain {Habu snake (Trimeresurus flavoviridis) [TaxId: 88087]} Length = 123

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Snake coagglutinin beta chain
species: Habu snake (Trimeresurus flavoviridis) [TaxId: 88087]

 Score = 42.8 bits (99), Expect = 2e-05
 Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 3/86 (3%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCK--SLDSDLANVNDADEHGFIMYQLFWQDP 86
           CP  W  Y   CY+    P K   DA+  C        L +   ++E  F++   F    
Sbjct: 2   CPSDWSSYEGHCYKPFSEP-KNWADAENFCTQQHAGGHLVSFQSSEEADFVVKLAFQTFG 60

Query: 87  QRRKWYFGGTQQSPNLWVNEDGTNLN 112
               W       +   W   +   L 
Sbjct: 61  HSIFWMGLSNVWNQCNWQWSNAAMLR 86

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 2e-05
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 6/78 (7%)

Query: 687 GDKVRLECVAFGY-PVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASN 745
           G  + L C  +    V    + + G        +   N  ++I N  VED G Y C    
Sbjct: 15  GQPLFLRCHGWRNWDVYKVIYYKDGEA----LKYWYENHNISITNATVEDSGTYYCTGKV 70

Query: 746 DRSALES-SVTISIQAEP 762
            +   ES  + I++   P
Sbjct: 71  WQLDYESEPLNITVIKAP 88

>d1oz7b_ d.169.1.1 (B:) Snake coagglutinin beta chain {Saw-scaled viper (Echis carinatus), echicetin [TaxId: 40353]} Length = 123

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Snake coagglutinin beta chain
species: Saw-scaled viper (Echis carinatus), echicetin [TaxId: 40353]

 Score = 42.7 bits (99), Expect = 2e-05
 Identities = 19/86 (22%), Positives = 27/86 (31%), Gaps = 3/86 (3%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCK--SLDSDLANVNDADEHGFIMYQLFWQDP 86
           C   W  Y   CY+  K       DA+  C     D  L +  ++ E  F++   F    
Sbjct: 2   CLPDWSVYEGYCYKVFKER-MNWADAEKFCTKQHKDGHLVSFRNSKEVDFVISLAFPMLK 60

Query: 87  QRRKWYFGGTQQSPNLWVNEDGTNLN 112
               W           W   DG  L+
Sbjct: 61  NDLVWIGLTDYWRDCNWEWSDGAQLD 86

>d1umrc_ d.169.1.1 (C:) Snake coagglutinin beta chain {South american rattlesnake (Crotalus durissus terrificus), convulxin [TaxId: 8732]} Length = 125

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Snake coagglutinin beta chain
species: South american rattlesnake (Crotalus durissus terrificus), convulxin [TaxId: 8732]

 Score = 42.8 bits (99), Expect = 2e-05
 Identities = 21/86 (24%), Positives = 29/86 (33%), Gaps = 3/86 (3%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS--LDSDLANVNDADEHGFIMYQLFWQDP 86
           CP HW  Y   CY+  K    T  DA+  C      S L + +  +E  F++        
Sbjct: 4   CPSHWSSYDRYCYKVFKQE-MTWADAEKFCTQQHTGSHLVSFHSTEEVDFVVKMTHQSLK 62

Query: 87  QRRKWYFGGTQQSPNLWVNEDGTNLN 112
               W       +   W   DGT   
Sbjct: 63  STFFWIGANNIWNKCNWQWSDGTKPE 88

>d1egga_ d.169.1.1 (A:) Macrophage mannose receptor, CRD4 {Human (Homo sapiens) [TaxId: 9606]} Length = 136

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Macrophage mannose receptor, CRD4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 2e-05
 Identities = 24/135 (17%), Positives = 47/135 (34%), Gaps = 7/135 (5%)

Query: 29  CPQHWV--QYRDSCYRFVKSPL---KTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFW 83
           CP+ W        C++         KT  +++  C++L  DLA++N+ +E   I   +  
Sbjct: 1   CPEDWGASSRTSLCFKLYAKGKHEKKTWFESRDFCRALGGDLASINNKEEQQTIWRLITA 60

Query: 84  QDPQRRKWYFGGTQQSPNLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWG 143
                + ++ G T  SP+        +    +     EP +    +Y           W 
Sbjct: 61  SGSYHKLFWLGLTYGSPSEGFTWSDGSPVSYENWAYGEPNNYQNVEYCGELKGDPTMSWN 120

Query: 144 FERVTGMEPLLFICE 158
                      +IC+
Sbjct: 121 DINCE--HLNNWICQ 133

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 2e-05
 Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 1/79 (1%)

Query: 679 TFP-EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQG 737
           TF   +     +V  +           +  R  S      Y +  +  LTI N+   D+ 
Sbjct: 14  TFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDED 73

Query: 738 EYICRASNDRSALESSVTI 756
           EY   + N    ++  + +
Sbjct: 74  EYEMESPNITDTMKFFLYV 92

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.003
 Identities = 9/76 (11%), Positives = 22/76 (28%), Gaps = 4/76 (5%)

Query: 211 DITLSCYAGG-YPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGN--LIINDPRQVE 267
           ++T    +        ++  K+   +              R  L   +  L I +     
Sbjct: 12  NVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTS-S 70

Query: 268 DRGSYHCKASNKFGSI 283
           D   Y  ++ N   ++
Sbjct: 71  DEDEYEMESPNITDTM 86

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.003
 Identities = 9/76 (11%), Positives = 22/76 (28%), Gaps = 4/76 (5%)

Query: 484 DITLSCYAGG-YPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGN--LIINDPRQVE 540
           ++T    +        ++  K+   +              R  L   +  L I +     
Sbjct: 12  NVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTS-S 70

Query: 541 DRGSYHCKASNKFGSI 556
           D   Y  ++ N   ++
Sbjct: 71  DEDEYEMESPNITDTM 86

>d1jwib_ d.169.1.1 (B:) Snake coagglutinin beta chain {Puff adder (Bitis arietans), bitiscetin [TaxId: 8692]} Length = 123

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Snake coagglutinin beta chain
species: Puff adder (Bitis arietans), bitiscetin [TaxId: 8692]

 Score = 42.3 bits (98), Expect = 2e-05
 Identities = 23/86 (26%), Positives = 30/86 (34%), Gaps = 3/86 (3%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDLANVNDADEHGFIMYQLFWQDP 86
           C   W  Y+  CY+  K   KT  DA+  CK L     L +VN  +E  FI      +  
Sbjct: 2   CLPDWSSYKGHCYKVFKVE-KTWADAEKFCKELVNGGHLMSVNSREEGEFISKLALEKMR 60

Query: 87  QRRKWYFGGTQQSPNLWVNEDGTNLN 112
               W               DG  L+
Sbjct: 61  IVLVWIGLSHFWRICPLRWTDGARLD 86

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 3e-05
 Identities = 17/102 (16%), Positives = 32/102 (31%), Gaps = 7/102 (6%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYP-NPSYEWFKEDYVQDRLVANLIDPLSD 248
           P      +    +  +        L C +   P    + W+K    +D+ + N  +    
Sbjct: 3   PRVKAVKSSEHINEGE-----TAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFF 57

Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
              +     L I +     D G Y C  ++  GS     + L
Sbjct: 58  VSSSQGRSELHIENLNMEADPGQYRCNGTSSKGS-DQAIITL 98

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 3e-05
 Identities = 17/102 (16%), Positives = 32/102 (31%), Gaps = 7/102 (6%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYP-NPSYEWFKEDYVQDRLVANLIDPLSD 521
           P      +    +  +        L C +   P    + W+K    +D+ + N  +    
Sbjct: 3   PRVKAVKSSEHINEGE-----TAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFF 57

Query: 522 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
              +     L I +     D G Y C  ++  GS     + L
Sbjct: 58  VSSSQGRSELHIENLNMEADPGQYRCNGTSSKGS-DQAIITL 98

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 7e-05
 Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 19/100 (19%)

Query: 677 PKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNR------- 724
           P              G+   L C +   P P  +W         +    N +        
Sbjct: 2   PPRVKAVKSSEHINEGETAMLVCKSESVP-PVTDWAWYKITDSEDKALMNGSESRFFVSS 60

Query: 725 -----ILTIPNVKVEDQ-GEYICRASNDRSALESSVTISI 758
                 L I N+ +E   G+Y C  ++ + + ++ +T+ +
Sbjct: 61  SQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100

>d1v7pa_ d.169.1.1 (A:) Snake coagglutinin alpha chain {Snake (Echis multisquamatus), Ems16 [TaxId: 93050]} Length = 134

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Snake coagglutinin alpha chain
species: Snake (Echis multisquamatus), Ems16 [TaxId: 93050]

 Score = 42.0 bits (97), Expect = 3e-05
 Identities = 18/139 (12%), Positives = 46/139 (33%), Gaps = 15/139 (10%)

Query: 26  ELRCPQHWVQYRDSCYRFVKSPLKTRNDAK--LNCKSLDSDLANVNDADEHGFIMYQLFW 83
           +  CP  W  Y   CY  +  P +   +A+     ++ D  L ++   +E  F+   +  
Sbjct: 1   DFDCPSDWTAYDQHCYLAIGEP-QNWYEAERFCTEQAKDGHLVSIQSREEGNFVAQLVSG 59

Query: 84  QDPQRRKWYFGG----TQQSPNLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSL 139
              +   + + G     ++        DG+ +  ++        +   +     +   + 
Sbjct: 60  FMHRSEIYVWIGLRDRREEQQCNPEWNDGSKIIYVN------WKEGESKMCQGLTKWTNF 113

Query: 140 KRWGFERVTGMEPLLFICE 158
             W        +   F+C+
Sbjct: 114 HDWNNINCE--DLYPFVCK 130

>d1jwia_ d.169.1.1 (A:) Snake coagglutinin alpha chain {Puff adder (Bitis arietans), bitiscetin [TaxId: 8692]} Length = 124

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Snake coagglutinin alpha chain
species: Puff adder (Bitis arietans), bitiscetin [TaxId: 8692]

 Score = 42.0 bits (97), Expect = 4e-05
 Identities = 24/132 (18%), Positives = 43/132 (32%), Gaps = 9/132 (6%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
           C   W  Y+  CY+  K    T  DA+  C      LA+++  +E  F+         + 
Sbjct: 1   CLPDWSSYKGHCYKVFKKV-GTWEDAEKFCVENSGHLASIDSKEEADFVTKLASQTLTKF 59

Query: 89  R-KWYFGGTQQSPNLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERV 147
               + G   +S     +   T+ + +    + EP                 + W     
Sbjct: 60  VYDAWIGLRDESKTQQCSPQWTDGSSVVYENVDEP-----TKCFGLDVHTEYRTWTDLPC 114

Query: 148 TGMEPLLFICEA 159
              E   FIC++
Sbjct: 115 G--EKNPFICKS 124

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 4e-05
 Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 9/80 (11%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----NFNRILTIPNVKVEDQGEYI 740
             G+    E      P     W  +G PL  +   E        IL + N ++   GE  
Sbjct: 14  FVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVS 72

Query: 741 CRASNDRSALESSVTISIQA 760
            +A+N     +S+  + ++ 
Sbjct: 73  FQAANA----KSAANLKVKE 88

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 4e-05
 Identities = 17/87 (19%), Positives = 26/87 (29%), Gaps = 12/87 (13%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENF------------NRILTIPNVK 732
              + V+L C   G+  P   W        R   + N                +T  +V 
Sbjct: 17  PENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVT 76

Query: 733 VEDQGEYICRASNDRSALESSVTISIQ 759
            ED G Y C  S +       V + + 
Sbjct: 77  REDTGTYTCMVSEEGGNSYGEVKVKLI 103

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 4/84 (4%)

Query: 210 NDITLSCYAGGYPNPSYEWFKEDY--VQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 267
           N + LSC   G+ +P  EW  +     +     N I    + R T     +        E
Sbjct: 20  NPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFK-SVTRE 78

Query: 268 DRGSYHCKASNKFGSIISE-SVQL 290
           D G+Y C  S + G+   E  V+L
Sbjct: 79  DTGTYTCMVSEEGGNSYGEVKVKL 102

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 4/84 (4%)

Query: 483 NDITLSCYAGGYPNPSYEWFKEDY--VQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 540
           N + LSC   G+ +P  EW  +     +     N I    + R T     +        E
Sbjct: 20  NPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFK-SVTRE 78

Query: 541 DRGSYHCKASNKFGSIISE-SVQL 563
           D G+Y C  S + G+   E  V+L
Sbjct: 79  DTGTYTCMVSEEGGNSYGEVKVKL 102

>d1wk1a_ d.169.1.1 (A:) Hypothetical protein F28B4.3 {Caenorhabditis elegans [TaxId: 6239]} Length = 150

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Hypothetical protein F28B4.3
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 42.3 bits (98), Expect = 4e-05
 Identities = 21/125 (16%), Positives = 39/125 (31%), Gaps = 12/125 (9%)

Query: 40  CYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQS 99
                   L +   A+  C S    LA+    D++ F              ++ G  + S
Sbjct: 10  FLTVNDDIL-SMPQARNFCASAGGYLADDLGDDKNNFYSSIAANTQ-----FWIGLFKNS 63

Query: 100 PNLWVNEDGTNLNELDAAFLP------EPADNVQRDYLAYSFSQSLKRWGFERVTGMEPL 153
              +  + G  +N              EP+++  R  + +      K   +   T   P 
Sbjct: 64  DGQFYWDRGQGINPDLLNQPITYWANGEPSNDPTRQCVYFDGRSGDKSKVWTTDTCATPR 123

Query: 154 LFICE 158
            FIC+
Sbjct: 124 PFICQ 128

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 4e-05
 Identities = 10/97 (10%), Positives = 19/97 (19%), Gaps = 16/97 (16%)

Query: 685 KAGDKVRLECVAFGYP----------------VPSYNWTRRGSPLPRNAYFENFNRILTI 728
           K G+ +                          + S              +   +   + I
Sbjct: 13  KVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQI 72

Query: 729 PNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFT 765
              K    G Y C  +        S  + +      T
Sbjct: 73  IKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTT 109

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 15/105 (14%), Positives = 30/105 (28%), Gaps = 13/105 (12%)

Query: 192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP------SYEWFKEDYVQDRLVANLIDP 245
           FI++P      + +     DIT                  ++    D          +  
Sbjct: 3   FIEKPQGGTVKVGE-----DITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKE 57

Query: 246 LSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
             ++   +    + I    +    G+Y C+ + K     S S  L
Sbjct: 58  TFERHSRVYTFEMQIIKA-KDNFAGNYRCEVTYKDKF-DSCSFDL 100

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 15/105 (14%), Positives = 30/105 (28%), Gaps = 13/105 (12%)

Query: 465 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP------SYEWFKEDYVQDRLVANLIDP 518
           FI++P      + +     DIT                  ++    D          +  
Sbjct: 3   FIEKPQGGTVKVGE-----DITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKE 57

Query: 519 LSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
             ++   +    + I    +    G+Y C+ + K     S S  L
Sbjct: 58  TFERHSRVYTFEMQIIKA-KDNFAGNYRCEVTYKDKF-DSCSFDL 100

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 6e-05
 Identities = 15/88 (17%), Positives = 26/88 (29%), Gaps = 12/88 (13%)

Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNR-----------ILTIPNVKVE- 734
           G+K +++C     P P          +  +     +              LTI N+    
Sbjct: 21  GEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRAD 80

Query: 735 DQGEYICRASNDRSALESSVTISIQAEP 762
            Q  Y C A N   +    + +  Q   
Sbjct: 81  FQTIYNCTAWNSFGSDTEIIRLKEQGSE 108

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 1e-04
 Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 7/104 (6%)

Query: 188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWF-KEDYVQDRLVANLIDPL 246
            GP  I           +        + C+    P P    +  ++ V +   +      
Sbjct: 5   NGPPIISSTQTQHALHGE-----KGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVE 59

Query: 247 SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
           +          L I++  + + +  Y+C A N FGS  +E ++L
Sbjct: 60  TISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGS-DTEIIRL 102

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 1e-04
 Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 7/104 (6%)

Query: 461 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWF-KEDYVQDRLVANLIDPL 519
            GP  I           +        + C+    P P    +  ++ V +   +      
Sbjct: 5   NGPPIISSTQTQHALHGE-----KGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVE 59

Query: 520 SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
           +          L I++  + + +  Y+C A N FGS  +E ++L
Sbjct: 60  TISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGS-DTEIIRL 102

>d1gz2a_ d.169.1.1 (A:) Ovocleidin-17 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 139

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Ovocleidin-17
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 27/142 (19%), Positives = 38/142 (26%), Gaps = 15/142 (10%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNC--KSLDSDLANVNDADEHGFIMYQL----- 81
           C   WV     C  F      + + A+  C      S LA V  A E   +   L     
Sbjct: 2   CGPGWVPTPGGCLGFFSRE-LSWSRAESFCRRWGPGSHLAAVRSAAELRLLAELLNASRG 60

Query: 82  ---FWQDPQRRKWYFGGTQQSPNLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQS 138
                +    R W           W   DGT        +             A    ++
Sbjct: 61  GDGSGEGADGRVWIGLHRPAGSRSWRWSDGTAPRFAS--WHRTAKARRGGRCAALRDEEA 118

Query: 139 LKRWGFERVTGMEPLLFICEAS 160
              W     T  E   F+C+A+
Sbjct: 119 FTSWAARPCT--ERNAFVCKAA 138

>d1tn3a_ d.169.1.1 (A:) Tetranectin {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Tetranectin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 1e-04
 Identities = 21/140 (15%), Positives = 45/140 (32%), Gaps = 8/140 (5%)

Query: 25  LELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQ 84
           L+  C +   +    C+       KT ++A  +C S    L+      E+  +   L   
Sbjct: 2   LQTVCLKGT-KVHMKCFLAFTQT-KTFHEASEDCISRGGTLSTPQTGSENDALYEYLRQS 59

Query: 85  DPQRRKWYFGGTQQSPN---LWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKR 141
                + + G    +     + +          +     +P      +    S + + K 
Sbjct: 60  VGNEAEIWLGLNDMAAEGTWVDMTGARIAYKNWETEITAQPDGGKTENCAVLSGAANGK- 118

Query: 142 WGFERVTGMEPLLFICEASI 161
           W  +R    + L +IC+  I
Sbjct: 119 WFDKRCR--DQLPYICQFGI 136

>d1sb2b1 d.169.1.1 (B:2-128) Snake coagglutinin beta chain {Malayan pit viper (Calloselasma rhodostoma), rhodocetin [TaxId: 8717]} Length = 127

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Snake coagglutinin beta chain
species: Malayan pit viper (Calloselasma rhodostoma), rhodocetin [TaxId: 8717]

 Score = 40.1 bits (92), Expect = 2e-04
 Identities = 24/133 (18%), Positives = 44/133 (33%), Gaps = 13/133 (9%)

Query: 28  RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCK--SLDSDLANVNDADEHGFIMYQLFWQD 85
           RCP  W   +  CY+  K   KT  +A+  C   + +  L ++  A E  F+   +    
Sbjct: 2   RCPTTWSASKLYCYKPFKEK-KTWIEAERFCAKQAENGHLVSIGSAAEADFLDLVIVVNF 60

Query: 86  PQRRKWYFGGTQQSPNLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFE 145
            ++R   + G  +    W N    +             +   R        +   +W   
Sbjct: 61  DKQRYRAWTGLTERNLKWTNGASVSYE--------NLYEPYIRKCFVVQPWEGKSKWYKA 112

Query: 146 RVTGMEPLLFICE 158
                E   F+C+
Sbjct: 113 DCE--EKNAFLCK 123

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 13/101 (12%), Positives = 29/101 (28%), Gaps = 20/101 (19%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
           P+F  +P D+    +    L+        G     +  W++                   
Sbjct: 2   PFFTVEPKDLAVPPNAPFQLS----CEAVGPPEPVTIVWWR----------------GTT 41

Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
           +      +  + +   V     + C+A N  G   S +  +
Sbjct: 42  KIGGPAPSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATV 82

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 13/101 (12%), Positives = 29/101 (28%), Gaps = 20/101 (19%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
           P+F  +P D+    +    L+        G     +  W++                   
Sbjct: 2   PFFTVEPKDLAVPPNAPFQLS----CEAVGPPEPVTIVWWR----------------GTT 41

Query: 523 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
           +      +  + +   V     + C+A N  G   S +  +
Sbjct: 42  KIGGPAPSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATV 82

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 20/117 (17%), Positives = 31/117 (26%), Gaps = 30/117 (25%)

Query: 681 PEAP---KAGDKVRLECVAFGYPVPSYNWTRR--------------GSPLPRNAYFENFN 723
           P  P     GD+  L C        +                    G         E   
Sbjct: 8   PGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRG 67

Query: 724 RI-------------LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIP 767
           R              L I NV+  D+G Y C   +     E++V + ++    +  P
Sbjct: 68  RTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYWINP 124

>d1j34a_ d.169.1.1 (A:) Snake coagglutinin alpha chain {Habu snake (Trimeresurus flavoviridis) [TaxId: 88087]} Length = 129

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Snake coagglutinin alpha chain
species: Habu snake (Trimeresurus flavoviridis) [TaxId: 88087]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 24/137 (17%), Positives = 49/137 (35%), Gaps = 15/137 (10%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAK--LNCKSLDSDLANVNDADEHGFIMYQLFWQDP 86
           CP  W  Y   CY+  K   KT +DA+     ++    L ++  A E  F+   +     
Sbjct: 2   CPSGWSSYEGHCYKPFKLY-KTWDDAERFCTEQAKGGHLVSIESAGEADFVAQLVTENIQ 60

Query: 87  QRRKWYFGGT----QQSPNLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRW 142
             + + + G     ++        DG++++  +        +   +  L        ++W
Sbjct: 61  NTKSYVWIGLRVQGKEKQCSSEWSDGSSVSYEN------WIEAESKTCLGLEKETGFRKW 114

Query: 143 GFERVTGMEPLLFICEA 159
                   +   F+CEA
Sbjct: 115 VNIYCG--QQNPFVCEA 129

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 10/89 (11%), Positives = 20/89 (22%), Gaps = 9/89 (10%)

Query: 681 PEAPKAGDKVRLECVAFG---YPVPSYNWTRRGSPLPRNAYFE------NFNRILTIPNV 731
           P     G    +EC           +    R    L    + +                 
Sbjct: 11  PTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTAD 70

Query: 732 KVEDQGEYICRASNDRSALESSVTISIQA 760
           + +    + C A  D  +   ++     A
Sbjct: 71  REDGHRNFSCLAVLDLMSRGGNIFHKHSA 99

>d1g1ta1 d.169.1.1 (A:1-118) E-selectin, C-lectin domain {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: E-selectin, C-lectin domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 3e-04
 Identities = 15/119 (12%), Positives = 31/119 (26%), Gaps = 4/119 (3%)

Query: 40  CYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQS 99
            Y        T ++A   C+   + L  + + +E  +              W       +
Sbjct: 2   SYNTSTEA-MTYDEASAYCQQRYTHLVAIQNKEEIEY--LNSILSYSPSYYWIGIRKVNN 58

Query: 100 PNLWVNEDGTNLNELDAAFLPEPAD-NVQRDYLAYSFSQSLKRWGFERVTGMEPLLFIC 157
             +WV        E       EP +     D +     +      +      +  L +C
Sbjct: 59  VWVWVGTQKPLTEEAKNWAPGEPNNRQKDEDCVEIYIKREKDVGMWNDERCSKKKLALC 117

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 3e-04
 Identities = 16/85 (18%), Positives = 25/85 (29%), Gaps = 6/85 (7%)

Query: 685 KAGDKVRLEC-VAFGYPVPSYNWT----RRGSPLPRNAYFENFNRILTIPNVKVEDQGEY 739
            A +     C +       +  W     +      + +        L     KVED G Y
Sbjct: 15  SANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHY 74

Query: 740 ICRASNDRSALESSVTISI-QAEPN 763
            C   N    L   ++    + EPN
Sbjct: 75  YCVVRNSSYCLRIKISAKFVENEPN 99

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.5 bits (88), Expect = 3e-04
 Identities = 21/90 (23%), Positives = 27/90 (30%), Gaps = 7/90 (7%)

Query: 672 FPNNFPKTFPEAP--KAGDKVRLEC-VAFGYPVPSYNWTRRGSPLPRNA----YFENFNR 724
           F   F     +      G  V   C     YP  SY W     P    A    +      
Sbjct: 2   FLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG 61

Query: 725 ILTIPNVKVEDQGEYICRASNDRSALESSV 754
            L I   +  D G Y C A++    +  SV
Sbjct: 62  NLYIAKTEASDLGNYSCFATSHIDFITKSV 91

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 5e-04
 Identities = 14/88 (15%), Positives = 25/88 (28%), Gaps = 15/88 (17%)

Query: 687 GDKVRLEC-------------VAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKV 733
           G  + L                  G  + +    +    L   A+    N  L I N+  
Sbjct: 10  GHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTR 69

Query: 734 EDQGEYICRASND--RSALESSVTISIQ 759
           +D G Y     +      L  ++ + I 
Sbjct: 70  DDSGTYNVTVYSTNGTRILNKALDLRIL 97

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 5e-04
 Identities = 14/84 (16%), Positives = 32/84 (38%), Gaps = 5/84 (5%)

Query: 211 DITLSC-YAGGYPN-PSYEWFKEDYVQDRLVANLIDPLSDKRFTLSG-GNLIINDPRQVE 267
            I L+        +     W +   +       +   L    F +   G+L I +  + +
Sbjct: 12  GINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTR-D 70

Query: 268 DRGSYHCKASNKFG-SIISESVQL 290
           D G+Y+    +  G  I+++++ L
Sbjct: 71  DSGTYNVTVYSTNGTRILNKALDL 94

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 5e-04
 Identities = 14/84 (16%), Positives = 32/84 (38%), Gaps = 5/84 (5%)

Query: 484 DITLSC-YAGGYPN-PSYEWFKEDYVQDRLVANLIDPLSDKRFTLSG-GNLIINDPRQVE 540
            I L+        +     W +   +       +   L    F +   G+L I +  + +
Sbjct: 12  GINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTR-D 70

Query: 541 DRGSYHCKASNKFG-SIISESVQL 563
           D G+Y+    +  G  I+++++ L
Sbjct: 71  DSGTYNVTVYSTNGTRILNKALDL 94

>d1g1sa1 d.169.1.1 (A:1-118) P-selectin, C-lectin domain {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: P-selectin, C-lectin domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 6e-04
 Identities = 16/119 (13%), Positives = 36/119 (30%), Gaps = 4/119 (3%)

Query: 40  CYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQS 99
            Y +      + N ++  C++  +DL  + + +E  ++   L +       W        
Sbjct: 2   TYHYSTKA-YSWNISRKYCQNRYTDLVAIQNKNEIDYLNKVLPYYSSYY--WIGIRKNNK 58

Query: 100 PNLWVNEDGTNLNELDAAFLPEPADNVQR-DYLAYSFSQSLKRWGFERVTGMEPLLFIC 157
              WV       NE +     EP +     D +            +     ++    +C
Sbjct: 59  TWTWVGTKKALTNEAENWADNEPNNKRNNEDCVEIYIKSPSAPGKWNDEHCLKKKHALC 117

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 6e-04
 Identities = 14/89 (15%), Positives = 24/89 (26%), Gaps = 17/89 (19%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSP----------------LPRNAYFENFNRILTI 728
             G +++L C   G       W   GS                  P N        +L I
Sbjct: 15  DLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNI 74

Query: 729 PNVKVEDQG-EYICRASNDRSALESSVTI 756
             ++       + C A N      + + +
Sbjct: 75  SEIESRFYKHPFTCFAKNTHGIDAAYIQL 103

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.003
 Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 11/107 (10%)

Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFK------EDYVQDRLVANLI 243
           P  +    + +    +  + + I L C   G  +    W        ED          +
Sbjct: 2   PVIVSPANETM----EVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSV 57

Query: 244 DPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
           +  ++KR +     L I++      +  + C A N  G   +  +QL
Sbjct: 58  ENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGI-DAAYIQL 103

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.003
 Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 11/107 (10%)

Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFK------EDYVQDRLVANLI 516
           P  +    + +    +  + + I L C   G  +    W        ED          +
Sbjct: 2   PVIVSPANETM----EVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSV 57

Query: 517 DPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
           +  ++KR +     L I++      +  + C A N  G   +  +QL
Sbjct: 58  ENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGI-DAAYIQL 103

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 7e-04
 Identities = 21/91 (23%), Positives = 30/91 (32%), Gaps = 21/91 (23%)

Query: 685 KAGDKVRLEC---------VAFGYPVPSYNWTRRGSPLPRNAYFENF------------N 723
           K GD V L C           +           +GS L +     N             N
Sbjct: 7   KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 66

Query: 724 RILTIPNVKVEDQGEYICRASNDRSALESSV 754
             L I N+K+ED   YIC   + +  ++  V
Sbjct: 67  FPLIIKNLKIEDSDTYICEVEDQKEEVQLLV 97

>d1sb2a1 d.169.1.1 (A:1-132) Snake coagglutinin alpha chain {Malayan pit viper (Calloselasma rhodostoma), rhodocetin [TaxId: 8717]} Length = 132

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Snake coagglutinin alpha chain
species: Malayan pit viper (Calloselasma rhodostoma), rhodocetin [TaxId: 8717]

 Score = 38.2 bits (87), Expect = 8e-04
 Identities = 23/133 (17%), Positives = 46/133 (34%), Gaps = 9/133 (6%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
           CP  W   +  CYR  K   KT  +A+  C   + +   V+  +    +   +  ++   
Sbjct: 2   CPDGWSSTKSYCYRPFKEK-KTWEEAERFCTEQEKEAHLVSMENRLEAVFVDMVMENNFE 60

Query: 89  RK---WYFGGTQQSPNLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFE 145
            K    + G   ++     N + ++ + +    L EP                L +W   
Sbjct: 61  NKIYRSWIGLKIENKGQRSNLEWSDGSSISYENLYEPY---MEKCFLMDHQSGLPKWHTA 117

Query: 146 RVTGMEPLLFICE 158
                E  +F+C+
Sbjct: 118 DCE--EKNVFMCK 128

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 15/72 (20%), Positives = 23/72 (31%), Gaps = 7/72 (9%)

Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASND 746
            D V L+C     P  +             +   +      I    V D GEY C+ +  
Sbjct: 20  KDSVTLKCQGAYSPEDNSTQWFH-----NESLISSQASSYFIDAATVNDSGEYRCQTNL- 73

Query: 747 RSALESSVTISI 758
            S L   V + +
Sbjct: 74  -STLSDPVQLEV 84

>d1umra_ d.169.1.1 (A:) Snake coagglutinin alpha chain {South american rattlesnake (Crotalus durissus terrificus), convulxin [TaxId: 8732]} Length = 135

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Snake coagglutinin alpha chain
species: South american rattlesnake (Crotalus durissus terrificus), convulxin [TaxId: 8732]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 21/135 (15%), Positives = 43/135 (31%), Gaps = 9/135 (6%)

Query: 27  LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNC--KSLDSDLANVNDADEHGFIMYQLFWQ 84
           L CP  W  Y   CYR          DA+  C  ++  + L ++  A E  F+ + +   
Sbjct: 2   LHCPSDWYYYDQHCYRIFNEE-MNWEDAEWFCTKQAKGAHLVSIKSAKEADFVAWMVTQN 60

Query: 85  DPQRR-KWYFGGTQQSPNLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWG 143
             +       G   Q+     +   ++ + +    L +                  ++W 
Sbjct: 61  IEESFSHVSIGLRVQNKEKQCSTKWSDGSSVSYDNLLDLYIT---KCSLLKKETGFRKWF 117

Query: 144 FERVTGMEPLLFICE 158
                    + F+C+
Sbjct: 118 VASCI--GKIPFVCK 130

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.6 bits (84), Expect = 0.002
 Identities = 9/95 (9%), Positives = 22/95 (23%), Gaps = 20/95 (21%)

Query: 678 KTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----------------- 720
           +  P      + V L        + ++ W +  +                          
Sbjct: 5   EAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGR 64

Query: 721 ---NFNRILTIPNVKVEDQGEYICRASNDRSALES 752
                N  L    + ++D G Y    +++      
Sbjct: 65  EIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQ 99

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.002
 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 1/77 (1%)

Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNR-ILTIPNVKVEDQGEYICRA 743
           + GD V L C   G   P ++W  +                 LT+  V   ++  Y+C A
Sbjct: 14  QIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTA 73

Query: 744 SNDRSALESSVTISIQA 760
           + +   LE  + + I +
Sbjct: 74  TCESRKLEKGIQVEIYS 90

>d1fvua_ d.169.1.1 (A:) Snake coagglutinin alpha chain {Jararaca (Bothrops jararaca), botrocetin [TaxId: 8724]} Length = 133

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Snake coagglutinin alpha chain
species: Jararaca (Bothrops jararaca), botrocetin [TaxId: 8724]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 19/132 (14%), Positives = 39/132 (29%), Gaps = 6/132 (4%)

Query: 29  CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCK--SLDSDLANVNDADEHGFIMYQLFWQDP 86
           CP  W  Y  +CY+F +       DA+  C   +    L ++    +    +  L  ++ 
Sbjct: 2   CPSGWSSYEGNCYKFFQQK-MNWADAERFCSEQAKGGHLVSIKIYSKEKDFVGDLVTKNI 60

Query: 87  QRRKWYFGGTQQSPNLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFER 146
           Q    Y     +  N          +    ++     +   +   A         W    
Sbjct: 61  QSSDLYAWIGLRVENKEKQCSSEWSDGSSVSYEN-VVERTVKKCFALEKDLGFVLWINLY 119

Query: 147 VTGMEPLLFICE 158
               +   F+C+
Sbjct: 120 CA--QKNPFVCK 129

>d1hupa1 d.169.1.1 (A:112-228) Mannose-binding protein A, C-lectin domain {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Mannose-binding protein A, C-lectin domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.003
 Identities = 18/127 (14%), Positives = 38/127 (29%), Gaps = 11/127 (8%)

Query: 35  QYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFG 94
           Q  +  +        T    K  C    + +A   +A E+G I   +  +      +   
Sbjct: 2   QVGNKFFLTNGEI-MTFEKVKALCVKFQASVATPRNAAENGAIQNLIKEE-----AFLGI 55

Query: 95  GTQQSPNLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLL 154
             +++   +V+  G  L   +             D +    +    +W     +     L
Sbjct: 56  TDEKTEGQFVDLTGNRLTYTNWNEGEPNNAGSDEDCVLLLKNG---QWNDVPCS--TSHL 110

Query: 155 FICEASI 161
            +CE  I
Sbjct: 111 AVCEFPI 117

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 18/72 (25%), Positives = 24/72 (33%), Gaps = 7/72 (9%)

Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASND 746
           G+ V L C    +   S             +  E  N  L I N K ED GEY C+    
Sbjct: 16  GENVTLTCNGNNFFEVSSTKWF-----HNGSLSEETNSSLNIVNAKFEDSGEYKCQHQQ- 69

Query: 747 RSALESSVTISI 758
                  V + +
Sbjct: 70  -VNESEPVYLEV 80

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 2/81 (2%)

Query: 685 KAGDKVRLECVAFGYPVP-SYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRA 743
           K  D V L C++        + +  +   L         N IL I  +K ED GEY C  
Sbjct: 16  KELDSVTLTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEI 75

Query: 744 SNDRSALES-SVTISIQAEPN 763
           SN  S   S S+ + I  +P+
Sbjct: 76  SNPVSVRRSNSIKLDIIFDPS 96

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	813
d1qdda_	144	Lithostathine, inhibitor of stone formation {Human	99.91
d1xpha1	130	DC-SIGNR (DC-SIGN related receptor) {Human (Homo s	99.89
d1tdqb_	126	Aggrecan core protein {Rat (Rattus norvegicus) [Ta	99.89
d1jzna_	135	Galactose-specific C-type lectin {Western diamondb	99.89
d2afpa_	129	Type II antifreeze protein {Sea raven (Hemitripter	99.89
d1gz2a_	139	Ovocleidin-17 {Chicken (Gallus gallus) [TaxId: 903	99.89
d1oz7b_	123	Snake coagglutinin beta chain {Saw-scaled viper (E	99.88
d1hq8a_	123	NK cell-activating receptor nkg2d {Mouse (Mus musc	99.88
d1tn3a_	137	Tetranectin {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1uv0a_	140	Pancreatitis-associated protein 1 {Human (Homo sap	99.88
d1v7pb_	127	Snake coagglutinin beta chain {Snake (Echis multis	99.88
d1fvub_	125	Snake coagglutinin beta chain {Jararaca (Bothrops	99.88
d1wmza_	140	Lectin CEL-I {Cucumaria echinata [TaxId: 40245]}	99.88
d1jwib_	123	Snake coagglutinin beta chain {Puff adder (Bitis a	99.88
d1c3ab_	125	Snake coagglutinin beta chain {Habu snake (Trimere	99.88
d1t8da1	143	Low affinity immunoglobulin epsilon Fc receptor {H	99.88
d1j34b_	123	Snake coagglutinin beta chain {Habu snake (Trimere	99.88
d1ypqa1	131	Oxidised low density lipoprotein {Human (Homo sapi	99.88
d1qo3c_	133	NK cell receptor {Mouse (Mus musculus), ly49-a [Ta	99.87
d1umrc_	125	Snake coagglutinin beta chain {South american ratt	99.87
d1sb2b1	127	Snake coagglutinin beta chain {Malayan pit viper (	99.87
d1e87a_	117	CD69 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1jwia_	124	Snake coagglutinin alpha chain {Puff adder (Bitis	99.86
d1j34a_	129	Snake coagglutinin alpha chain {Habu snake (Trimer	99.86
d3bdwa1	121	CD94 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1sb2a1	132	Snake coagglutinin alpha chain {Malayan pit viper	99.86
d3c8ja1	122	NK cell receptor {Mouse (Mus musculus), ly49-c [Ta	99.86
d1dv8a_	128	H1 subunit of the asialoglycoprotein receptor {Hum	99.85
d1oz7a_	131	Snake coagglutinin alpha chain {Saw-scaled viper (	99.85
d1c3aa_	135	Snake coagglutinin alpha chain {Habu snake (Trimer	99.85
d1umra_	135	Snake coagglutinin alpha chain {South american rat	99.85
d1v7pa_	134	Snake coagglutinin alpha chain {Snake (Echis multi	99.85
d1egga_	136	Macrophage mannose receptor, CRD4 {Human (Homo sap	99.84
d1fvua_	133	Snake coagglutinin alpha chain {Jararaca (Bothrops	99.84
d1r13a1	119	Surfactant protein, lectin domain {Rat (Rattus nor	99.83
d2msba_	112	Mannose-binding protein A, C-lectin domain {Rat (R	99.83
d1pwba1	121	Surfactant protein, lectin domain {Human (Homo sap	99.83
d1hupa1	117	Mannose-binding protein A, C-lectin domain {Human	99.82
d1rdl1_	111	Mannose-binding protein A, C-lectin domain {Rat (R	99.79
d1kg0c_	136	EBV gp42 {Epstein-Barr virus [TaxId: 10376]}	99.78
d1h8ua_	115	Eosinophil major basic protein {Human (Homo sapien	99.75
d1wk1a_	150	Hypothetical protein F28B4.3 {Caenorhabditis elega	99.75
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.72
d1g1ta1	118	E-selectin, C-lectin domain {Human (Homo sapiens)	99.69
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1g1sa1	118	P-selectin, C-lectin domain {Human (Homo sapiens)	99.68
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.66
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.66
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.65
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.65
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.64
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.64
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.63
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.63
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.62
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.62
d1byfa_	123	Lectin TC14 {Tunicate (Polyandrocarpa misakiensis)	99.62
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.61
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.6
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.6
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.6
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.6
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.59
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.59
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.57
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.56
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.56
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.56
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.55
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.55
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.55
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.55
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.55
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.54
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.53
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.52
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.52
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.51
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.51
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.5
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.5
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.5
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.5
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.49
d2avga1	110	Cardiac myosin binding protein C, different domain	99.49
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.49
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.49
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.47
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.47
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.46
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.46
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.46
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.46
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.44
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.44
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.44
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.43
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.43
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.42
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.42
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.42
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.42
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.41
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.41
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.41
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.41
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.41
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.41
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.4
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.39
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.39
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.39
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.39
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.39
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.38
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.38
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.38
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.37
d2avga1	110	Cardiac myosin binding protein C, different domain	99.37
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.37
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.37
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.37
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.37
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.36
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.36
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.36
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.35
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.35
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.35
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.35
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.35
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.34
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.34
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.34
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.34
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.33
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.32
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.3
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.3
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.29
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.29
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.28
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.27
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.25
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.24
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.24
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.23
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.23
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.21
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.21
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.19
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.19
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.19
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.18
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.18
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.17
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.16
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.15
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.07
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.01
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.99
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.97
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.88
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.86
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.77
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.58
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.54
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.45
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.44
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.42
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.4
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.34
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.28
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.22
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.15
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.11
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.1
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.1
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.08
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.07
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.07
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.06
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.06
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.04
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.03
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.03
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.01
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.01
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.0
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	97.98
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	97.96
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	97.94
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	97.93
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	97.91
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	97.91
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	97.91
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	97.9
d8faba1	103	Immunoglobulin light chain lambda variable domain,	97.9
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	97.89
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	97.89
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	97.88
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	97.87
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	97.87
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	97.86
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	97.85
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	97.85
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.84
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.84
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	97.84
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	97.83
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	97.83
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	97.83
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	97.82
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	97.82
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	97.81
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	97.8
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	97.8
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	97.79
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.79
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.78
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	97.78
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	97.78
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.78
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	97.77
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	97.77
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	97.77
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	97.76
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	97.75
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	97.75
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	97.75
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	97.75
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.74
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	97.74
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	97.74
d8faba1	103	Immunoglobulin light chain lambda variable domain,	97.74
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	97.73
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	97.73
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	97.73
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	97.7
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.7
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	97.7
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	97.7
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	97.7
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	97.7
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	97.69
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	97.69
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	97.68
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	97.68
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	97.68
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	97.67
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	97.67
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	97.67
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	97.66
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	97.66
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	97.65
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	97.65
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	97.65
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	97.64
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	97.63
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	97.62
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	97.62
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	97.61
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	97.61
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	97.6
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	97.6
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	97.6
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	97.59
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.59
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	97.59
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.59
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.58
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	97.58
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	97.57
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	97.57
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	97.57
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	97.56
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.56
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	97.54
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	97.53
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	97.5
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	97.5
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	97.5
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	97.49
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	97.49
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	97.49
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.48
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	97.48
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	97.47
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	97.47
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	97.46
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	97.46
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	97.46
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.45
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	97.44
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.44
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.43
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	97.42
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	97.41
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.41
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	97.41
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	97.4
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	97.4
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	97.39
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	97.39
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	97.39
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	97.39
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.38
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.37
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	97.36
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	97.36
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.36
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	97.35
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.35
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	97.34
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	97.34
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	97.34
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.33
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	97.32
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	97.32
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.32
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.32
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	97.32
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.3
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.28
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.26
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.26
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	97.25
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	97.25
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.25
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	97.24
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	97.24
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.22
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.22
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.22
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.21
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.21
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	97.2
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	97.2
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	97.2
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.2
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.2
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	97.19
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.19
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	97.18
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.18
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	97.17
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	97.17
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	97.15
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.15
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	97.14
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.14
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.13
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.12
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.12
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.11
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	97.11
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.1
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.1
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.09
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.09
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.08
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	97.07
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	97.07
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.06
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.04
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.04
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	97.04
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.01
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	97.01
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	97.0
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	97.0
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	96.99
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	96.99
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	96.98
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	96.98
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	96.98
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	96.95
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	96.95
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	96.95
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	96.94
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	96.93
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	96.93
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	96.91
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.91
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	96.9
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	96.89
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	96.89
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	96.88
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	96.87
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	96.87
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	96.87
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	96.85
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	96.85
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	96.84
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	96.83
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	96.83
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	96.83
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	96.82
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	96.82
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	96.82
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	96.82
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	96.81
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	96.81
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	96.79
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	96.78
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.78
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	96.78
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	96.77
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	96.77
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	96.76
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	96.75
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	96.75
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	96.74
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	96.73
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	96.72
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	96.71
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	96.7
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	96.7
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	96.69
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	96.68
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	96.65
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	96.64
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	96.64
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	96.62
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	96.6
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	96.59
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	96.58
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.56
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	96.55
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	96.55
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	96.54
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	96.54
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	96.52
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	96.52
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.51
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	96.48
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	96.48
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	96.48
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	96.46
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	96.46
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	96.45
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	96.45
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	96.44
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.42
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	96.41
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	96.41
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	96.39
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	96.38
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	96.38
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	96.37
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.37
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	96.36
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	96.36
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	96.36
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	96.36
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	96.35
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	96.35
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	96.35
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.34
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	96.32
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	96.31
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	96.31
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	96.29
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	96.29
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	96.29
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.28
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	96.27
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	96.27
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	96.26
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	96.26
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	96.26
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	96.25
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	96.25
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	96.23
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	96.23
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	96.23
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	96.22
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	96.21
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	96.21
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	96.2
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	96.2
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.2
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	96.2
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	96.2
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	96.19
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	96.19
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	96.19
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	96.17
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	96.16
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	96.15
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	96.14
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	96.13
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	96.12
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	96.12
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	96.11
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	96.1
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	96.1
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	96.09
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	96.09

>d1qdda_ d.169.1.1 (A:) Lithostathine, inhibitor of stone formation {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Lithostathine, inhibitor of stone formation
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2e-24  Score=192.19  Aligned_cols=131  Identities=18%  Similarity=0.305  Sum_probs=112.8

Q ss_pred             cCCCchhhhccCCeEEEEecCCcCCHHHHHhHcccC-CCeEeeeCCHhHHHHHHHHhhhcCC-CCceEEEEeccCCCCCe
Q psy14896         26 ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSL-DSDLANVNDADEHGFIMYQLFWQDP-QRRKWYFGGTQQSPNLW  103 (813)
Q Consensus        26 ~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~-~~~L~~i~~~~e~~~i~~~~~~~~~-~~~~w~g~~~~~~~~~~  103 (813)
                      ...||.||..|+++||+|+.. .++|.+|+..|+.+ ||+||+|++++|++||..++..... ...+||||.+...++.|
T Consensus        11 ~~~Cp~gw~~~~~~CY~~~~~-~~~w~~A~~~C~~~~gg~L~~i~s~~e~~~l~~~l~~~~~~~~~~WiGl~~~~~~~~w   89 (144)
T d1qdda_          11 RISCPEGTNAYRSYCYYFNED-RETWVDADLYCQNMNSGNLVSVLTQAEGAFVASLIKESGTDDFNVWIGLHDPKKNRAW   89 (144)
T ss_dssp             GTSCCTTCEEETTEEEEEEEE-EECHHHHHHHHHHTTSCEECCCCSHHHHHHHHHHHHHTTCCCSEEEEEEECTTSSSCC
T ss_pred             CCcCCCCCEEECCEEEEEECC-ccCHHHHHHHHHhccccccceEEeeecchhhhhccccccccccceeeeeeccccccee
Confidence            456999999999999999998 49999999999986 7899999999999999998865433 33789999999889999


Q ss_pred             EEcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        104 VNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       104 ~W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      .|+||+++.| .+|..++|++...++|+.|....+  .+.|.+..|.....|+|+..
T Consensus        90 ~W~dGs~~~y-~~W~~~~P~~~~~~~C~~~~~~~~--~~~W~~~~C~~~~~fICe~k  143 (144)
T d1qdda_          90 HWSSGSLVSY-KSWGIGAPSSVNPGYCVSLTSSTG--FQKWKDVPCEDKFSFVCKFK  143 (144)
T ss_dssp             EETTCCCCCC-CCBCTTCSCSSSCCSEEEEEGGGT--TCSEEEECTTSCEEEEEEEE
T ss_pred             EecCCCeeec-ccccCCCCCCCCCccEEEEEccCC--CCcEEecCCCCCeEEEEEEC
Confidence            9999999998 577777998777889999977655  34566999999999999974

>d1xpha1 d.169.1.1 (A:265-394) DC-SIGNR (DC-SIGN related receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: DC-SIGNR (DC-SIGN related receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3e-23  Score=181.23  Aligned_cols=126  Identities=21%  Similarity=0.379  Sum_probs=107.7

Q ss_pred             cCCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEE
Q psy14896         26 ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVN  105 (813)
Q Consensus        26 ~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W  105 (813)
                      |.+||.||..|+++||+|+... ++|.+|+..|+.+||+||+|++++|++||..++...  ...+|||+.+...++.|.|
T Consensus         1 c~~Cp~gw~~~~~~CY~~~~~~-~tw~~A~~~C~~~gg~La~i~s~~~~~~~~~~~~~~--~~~~wig~~~~~~~~~~~W   77 (130)
T d1xpha1           1 CRHCPKDWTFFQGNCYFMSNSQ-RNWHDSVTACQEVRAQLVVIKTAEEQNFLQLQTSRS--NRFSWMGLSDLNQEGTWQW   77 (130)
T ss_dssp             SCBCCTTCEEETTEEEEECSSC-BCHHHHHHHHHHTTCEECCCCSHHHHHHHHHHHHHH--TCCEEEEEECCSTTCCCEE
T ss_pred             CCCCCCCCEEECCEEEEEECcc-cCHHHHHHHHhhcCCeEeeeCCHHHhhhhhhhhccc--cceeeeeeeccCcccceEe
Confidence            4679999999999999999995 999999999999999999999999999998887543  3468999999988999999


Q ss_pred             cCCCCCCc--cccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        106 EDGTNLNE--LDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       106 ~dgs~~~~--~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      +||+++.+  +.+|..++|++...++|+.|..  +  .  |.+..|.....|+|+++
T Consensus        78 ~dg~~~~~~~~~~W~~~~P~~~~~~~Cv~~~~--~--~--w~~~~C~~~~~fICe~p  128 (130)
T d1xpha1          78 VDGSPLSPSFQRYWNSGEPNNSGNEDCAEFSG--S--G--WNDNRCDVDNYWICKKP  128 (130)
T ss_dssp             TTSCBCCGGGGGGBCTTCCCCCTTCCEEEEET--T--E--EEEECTTSCBEEEEEEE
T ss_pred             ccccccccccccccCCcCCCCCCCCcEEEEEC--C--E--EEECCCCCCEEEEEEEe
Confidence            99998764  2355555898776778999842  2  3  45999999999999985

>d1tdqb_ d.169.1.1 (B:) Aggrecan core protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Aggrecan core protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=1.6e-23  Score=181.66  Aligned_cols=122  Identities=20%  Similarity=0.378  Sum_probs=106.5

Q ss_pred             CCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcC
Q psy14896         28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNED  107 (813)
Q Consensus        28 ~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~d  107 (813)
                      .||.||+.|+++||+|+.+. ++|.+|+..|+.+||+||+|++++|++||..+.     ...+||||.+...++.|.|+|
T Consensus         2 ~Cp~gw~~~~~~CY~~~~~~-~sw~~A~~~C~~~g~~La~i~~~~e~~~l~~~~-----~~~~wigl~~~~~~~~~~W~d   75 (126)
T d1tdqb_           2 QCEEGWTKFQGHCYRHFPDR-ETWVDAERRCREQQSHLSSIVTPEEQEFVNKNA-----QDYQWIGLNDRTIEGDFRWSD   75 (126)
T ss_dssp             CCCTTCEEETTEEEEEEEEE-ECHHHHHHHHHHTTCEECCCCSHHHHHHHHHHH-----CSCEEEEEECSSSTTCCEETT
T ss_pred             CCCCCCeeeCCEEEEEECcc-cCHHHHHHHHHhhCcEEeEECChhHhhhhhccc-----cceeeeecccccCCCccCcCC
Confidence            59999999999999999995 999999999999999999999999999998875     346899999999999999999


Q ss_pred             CCCCCccccccCCCCCCcc--cCCeEEEEeeccccccceeeccCCCceeeeeee
Q psy14896        108 GTNLNELDAAFLPEPADNV--QRDYLAYSFSQSLKRWGFERVTGMEPLLFICEA  159 (813)
Q Consensus       108 gs~~~~~~~~~~~~p~~~~--~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~  159 (813)
                      |+++.| .+|..++|++..  .++|+.|.....   ..|.+..|.....|+|++
T Consensus        76 g~~~~~-~~w~~~~p~~~~~~~~~C~~~~~~~~---~~W~~~~C~~~~~fICek  125 (126)
T d1tdqb_          76 GHSLQF-EKWRPNQPDNFFATGEDCVVMIWHER---GEWNDVPCNYQLPFTCKK  125 (126)
T ss_dssp             CCCCCC-CCBCTTCCCCCSTTTEEEEEEETTTT---TEEEEEETTSCEEEEEEE
T ss_pred             CCCccc-ccccccCCCccccCCcceEEEEeCCC---CeEEecCCCCCEEEEeee
Confidence            999998 677777887643  467988865433   345599999999999997

>d1jzna_ d.169.1.1 (A:) Galactose-specific C-type lectin {Western diamondback rattlesnake (Crotalus atrox) [TaxId: 8730]}

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Galactose-specific C-type lectin
species: Western diamondback rattlesnake (Crotalus atrox) [TaxId: 8730]

Probab=99.89  E-value=2.7e-23  Score=182.50  Aligned_cols=129  Identities=17%  Similarity=0.225  Sum_probs=109.8

Q ss_pred             CCchhhhccCCeEEEEecCCcCCHHHHHhHcccC--CCeEeeeCCHhHHHHHHHHhhhcC-CCCceEEEEeccCCCCCeE
Q psy14896         28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSL--DSDLANVNDADEHGFIMYQLFWQD-PQRRKWYFGGTQQSPNLWV  104 (813)
Q Consensus        28 ~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~--~~~L~~i~~~~e~~~i~~~~~~~~-~~~~~w~g~~~~~~~~~~~  104 (813)
                      .||.||..|+++||+|+.. .++|.+|+..|+.+  |++|++|++.+|++||...+.... ....+||||.+...++.|.
T Consensus         2 ~Cp~gw~~~~~~CY~~~~~-~~tw~~A~~~C~~~~~g~~L~~i~s~~e~~~i~~~l~~~~~~~~~~WiGl~~~~~~~~~~   80 (135)
T d1jzna_           2 NCPLDWLPMNGLCYKIFNQ-LKTWEDAEMFCRKYKPGCHLASFHRYGESLEIAEYISDYHKGQENVWIGLRDKKKDFSWE   80 (135)
T ss_dssp             CSCTTSEEETTEEEEEEEE-EECHHHHHHHHHHHSSSEEECCCCSHHHHHHHHHHHHHHCCSSCCEEEEEECTTSSSCCE
T ss_pred             CCCCCCEeECCEEEEEECc-ccCHHHHHHHhhhccccccccccCCHHHHHHHHHhhhhccCCCccEEEEEeecCccccee
Confidence            5999999999999999999 49999999999875  689999999999999999885543 3447999999998899999


Q ss_pred             EcCCCCCCccccccCCCCCCcc-cCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        105 NEDGTNLNELDAAFLPEPADNV-QRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       105 W~dgs~~~~~~~~~~~~p~~~~-~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      |+||+++.| .+|..++|++.. .++|+.|....+  ...|.+..|.....|+|++.
T Consensus        81 W~dg~~~~~-~~W~~~~P~~~~~~~~Cv~~~~~~~--~~~W~~~~C~~~~~fiCe~k  134 (135)
T d1jzna_          81 WTDRSCTDY-LTWDKNQPDHYQNKEFCVELVSLTG--YRLWNDQVCESKDAFLCQCK  134 (135)
T ss_dssp             ETTCCCCCC-CCBCTTCCCCGGGCCCEEEECGGGT--TCSEEEECTTSCEEEEEEEC
T ss_pred             ecCCceeec-cccCCCCCCCCCCCCCEEEEEecCC--CCcEEeeCCCCCEEEEeeec
Confidence            999999998 677777997644 567999865444  34566999999999999984

>d2afpa_ d.169.1.1 (A:) Type II antifreeze protein {Sea raven (Hemitripterus americanus) [TaxId: 8094]}

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Type II antifreeze protein
species: Sea raven (Hemitripterus americanus) [TaxId: 8094]

Probab=99.89  E-value=2.6e-24  Score=187.11  Aligned_cols=125  Identities=21%  Similarity=0.364  Sum_probs=108.1

Q ss_pred             cCCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEE
Q psy14896         26 ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVN  105 (813)
Q Consensus        26 ~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W  105 (813)
                      ...||.||..|+++||+|+... ++|.+|+..|+.+||+||+|+|.+|++||..+.     ...+||||.+...++.|.|
T Consensus         4 g~~Cp~gw~~~~~~CY~~~~~~-~~w~~A~~~C~~~gg~La~i~s~~e~~fl~~~~-----~~~~Wig~~~~~~~~~w~W   77 (129)
T d2afpa_           4 GPNCPAGWQPLGDRCIYYETTA-MTWALAETNCMKLGGHLASIHSQEEHSFIQTLN-----AGVVWIGGSACLQAGAWTW   77 (129)
T ss_dssp             CCSSCSSSCCCSSSEECCCCSC-CCHHHHHHHHHHHSCEECCCSSSHHHHHHHHHC-----SSCBCCSCBCSSSSSCCBS
T ss_pred             CCCCCCCCEEECCEEEEEECcc-cCHHHHHHHHHhcCCeEeeeeehhcchhhcccc-----cCceeeeeecccccceeec
Confidence            3469999999999999999985 999999999999999999999999999998874     3468999999999999999


Q ss_pred             cCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        106 EDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       106 ~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      .||++++| .+|..++|++...+.|+.|.....   ..|.+..|.+...|+|+..
T Consensus        78 ~dgs~~~y-~~W~~~~P~~~~~~~c~~~~~~~~---~~W~~~~C~~~~~~ICe~t  128 (129)
T d2afpa_          78 SDGTPMNF-RSWCSTKPDDVLAACCMQMTAAAD---QCWDDLPCPASHKSVCAMT  128 (129)
T ss_dssp             SSSCCCCC-CCSSSCCSCCSTTCCBCCBCCSSS---SCBCCBCSCCCCCCCEEEC
T ss_pred             cCCCeeec-ccccCCCCCCCCCCcEEEEECCCC---CcEEeeCCCCCEeEEEEEe
Confidence            99999998 677767998777778888754432   3455999999999999974

>d1gz2a_ d.169.1.1 (A:) Ovocleidin-17 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Ovocleidin-17
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.89  E-value=2.4e-23  Score=184.23  Aligned_cols=128  Identities=20%  Similarity=0.239  Sum_probs=107.4

Q ss_pred             CCchhhhccCCeEEEEecCCcCCHHHHHhHcccC--CCeEeeeCCHhHHHHHHHHhhhcC--------CCCceEEEEecc
Q psy14896         28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSL--DSDLANVNDADEHGFIMYQLFWQD--------PQRRKWYFGGTQ   97 (813)
Q Consensus        28 ~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~--~~~L~~i~~~~e~~~i~~~~~~~~--------~~~~~w~g~~~~   97 (813)
                      .||.||..|+++||+|+... ++|.+|+.+|+.+  ||+||+|++++|++||.+++....        ....+||||++.
T Consensus         1 gCp~gw~~~~~~CY~~~~~~-~~w~~A~~~C~~~~~g~~L~~i~s~~e~~~i~~~l~~~~~~~~~~~~~~~~~WiGl~~~   79 (139)
T d1gz2a_           1 GCGPGWVPTPGGCLGFFSRE-LSWSRAESFCRRWGPGSHLAAVRSAAELRLLAELLNASRGGDGSGEGADGRVWIGLHRP   79 (139)
T ss_dssp             CCCTTCEEETTEEEEEEEEE-ECHHHHHHHHHTTCTTEEECCCCSHHHHHHHHHHHHCSSCCSSSCCCCSSCEEEEEECC
T ss_pred             CCCCCCEeECCEEEEEeCee-cCHHHHHhhhhcccCCceecchhhHHHHHHHHHHHHhhccccccccccccceeeeeeec
Confidence            39999999999999999984 9999999999864  899999999999999999884321        123689999998


Q ss_pred             CCCCCeEEcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896         98 QSPNLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus        98 ~~~~~~~W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      ..++.|.|+||+++.| .+|..++|++ ..++|+.|....+  ...|.+..|.+...|+|+++
T Consensus        80 ~~~~~w~W~dgs~~~y-~~W~~~~p~~-~~~~C~~l~~~~~--~~~W~~~~C~~~~~fiCe~~  138 (139)
T d1gz2a_          80 AGSRSWRWSDGTAPRF-ASWHRTAKAR-RGGRCAALRDEEA--FTSWAARPCTERNAFVCKAA  138 (139)
T ss_dssp             TTCSSCEETTSCCCCC-CCBCSSSGGG-CSCSEEEECTTTT--SSCEEEECTTCCEEEEEEEE
T ss_pred             ccCCceEeccCCccee-ecccCCCCCC-CCCcEEEEEecCC--CCcEEecCCCCCEeEEEEEc
Confidence            8899999999999998 6766667764 4678999965544  34556999999999999984

>d1oz7b_ d.169.1.1 (B:) Snake coagglutinin beta chain {Saw-scaled viper (Echis carinatus), echicetin [TaxId: 40353]}

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Snake coagglutinin beta chain
species: Saw-scaled viper (Echis carinatus), echicetin [TaxId: 40353]

Probab=99.88  E-value=1.7e-23  Score=180.00  Aligned_cols=119  Identities=21%  Similarity=0.370  Sum_probs=101.1

Q ss_pred             CchhhhccCCeEEEEecCCcCCHHHHHhHccc--CCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEc
Q psy14896         29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS--LDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNE  106 (813)
Q Consensus        29 Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~--~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~  106 (813)
                      ||.||..|+++||+|+... ++|.+|+..|+.  .||+||+|+|++|++||.+++........+||||++...++.|.|.
T Consensus         2 Cp~gw~~~~~~CY~~~~~~-~~~~~A~~~C~~~~~gg~L~~i~s~~e~~~l~~~~~~~~~~~~~WIGl~~~~~~~~~~W~   80 (123)
T d1oz7b_           2 CLPDWSVYEGYCYKVFKER-MNWADAEKFCTKQHKDGHLVSFRNSKEVDFVISLAFPMLKNDLVWIGLTDYWRDCNWEWS   80 (123)
T ss_dssp             CCTTCEEETTEEEEEEEEE-ECHHHHHHHHHHHSTTCEECCCCCSSHHHHHHHTSSTTTTCSEEEEEEECCCCGGGEEET
T ss_pred             CCccCEeECCEEEEEeCcc-cCHHHHHHHHhhccCCCcccccCCHHHhhhceeeeeecccceeEEEEeeccCcccceecc
Confidence            9999999999999999994 999999999975  5899999999999999999875544445789999999889999999


Q ss_pred             CCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        107 DGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       107 dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      ||++++| .+| .+      .++|+.|....+  .  |.+..|.....|+|+.+
T Consensus        81 dg~~~~y-~nW-~~------~~~C~~~~~~~~--~--W~~~~C~~~~~fICe~P  122 (123)
T d1oz7b_          81 DGAQLDY-KAW-DN------ERHCFIYKNTDN--Q--WTRRDCTWTFSFVCKCP  122 (123)
T ss_dssp             TCCCCCS-CCB-CS------STTEEEEEGGGT--E--EEEECTTSCEEEEEEEE
T ss_pred             CCCEeec-ccc-CC------CCCEEEEECCCC--E--EEeeCCCCcEEEEEEEc
Confidence            9999998 565 22      357988865433  4  45999999999999984

>d1hq8a_ d.169.1.1 (A:) NK cell-activating receptor nkg2d {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: NK cell-activating receptor nkg2d
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=8.7e-24  Score=181.85  Aligned_cols=119  Identities=23%  Similarity=0.406  Sum_probs=102.7

Q ss_pred             cCCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEE
Q psy14896         26 ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVN  105 (813)
Q Consensus        26 ~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W  105 (813)
                      +.+||.||..|+++||+|+.+. ++|.+|+..|+.+||+||+|++++|++||...      ...+||||.+...++.|.|
T Consensus         3 c~~Cp~gw~~~~~~CY~~~~~~-~~w~~A~~~C~~~gg~La~i~s~~e~~fl~~~------~~~~WiGl~~~~~~~~w~W   75 (123)
T d1hq8a_           3 CGPCPNNWICHRNNCYQFFNEE-KTWNQSQASCLSQNSSLLKIYSKEEQDFLKLV------KSYHWMGLVQIPANGSWQW   75 (123)
T ss_dssp             CCCCSTTCEEETTEEEEEEEEE-ECHHHHHHHHHTTTCEECCCSCTTTTGGGGGC------CSCEEEEEEECTTTCCEEE
T ss_pred             CCCCCccCEEECCEEEEEECcc-cCHHHHHHHHhhccCccceEehHHHHHHHhhh------hhceeeeeeecCCCCceEE
Confidence            5679999999999999999984 99999999999999999999999999999543      3568999999989999999


Q ss_pred             cCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        106 EDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       106 ~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      .||+++.| .+|..++|++   .+|+.+..     ...|.+..|.....|+|++.
T Consensus        76 ~dgs~~~~-~~w~~~~~~~---~~c~~~~~-----~~~w~~~~C~~~~~~ICek~  121 (123)
T d1hq8a_          76 EDGSSLSY-NQLTLVEIPK---GSCAVYGS-----SFKAYTEDCANLNTYICMKR  121 (123)
T ss_dssp             TTSCBCCT-TTCEEECCTT---CCEEEECS-----TTEEEEECTTSCEEEEEEEC
T ss_pred             CCCCcccc-cccCCCCCCC---CCEEEEEC-----CCeEEEeCCCCCEeEEEEEc
Confidence            99999988 6777777764   57888732     24455899999999999984

>d1tn3a_ d.169.1.1 (A:) Tetranectin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Tetranectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.9e-23  Score=183.66  Aligned_cols=128  Identities=15%  Similarity=0.191  Sum_probs=107.4

Q ss_pred             CCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcC-CCCceEEEEeccCCCCCeEE
Q psy14896         27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQD-PQRRKWYFGGTQQSPNLWVN  105 (813)
Q Consensus        27 ~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~-~~~~~w~g~~~~~~~~~~~W  105 (813)
                      ..||.|| .|+++||+|+.+. ++|.+|+..|+.+||+||+|+|++|++||..++.... ....+||||++...++.|.|
T Consensus         4 t~C~~G~-~~~~~CY~~~~~~-~tw~~A~~~C~~~gg~La~i~s~~e~~~l~~~l~~~~~~~~~~WiGl~~~~~~~~w~w   81 (137)
T d1tn3a_           4 TVCLKGT-KVHMKCFLAFTQT-KTFHEASEDCISRGGTLSTPQTGSENDALYEYLRQSVGNEAEIWLGLNDMAAEGTWVD   81 (137)
T ss_dssp             CEEEECS-SSSEEEEEEEEEE-ECHHHHHHHHHHTTCEECCCCSHHHHHHHHHHHHHHTCTTCEEEEEEEEEEETTEEEE
T ss_pred             CcCCCCe-EECCEEEEEeCcc-CCHHHHHHHHHHcCCccccccchHhcccccccccccccccccEeeeeccCCcccccEe
Confidence            3599999 6899999999995 9999999999999999999999999999999885542 34579999999888999999


Q ss_pred             cCCCCCCccccccC---CCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        106 EDGTNLNELDAAFL---PEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       106 ~dgs~~~~~~~~~~---~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      .||+++.| .+|..   ++|++...++|+.|.....   ..|.+..|.....|+|+..
T Consensus        82 ~dg~~~~y-~~w~~~~p~~p~~~~~~~C~~~~~~~~---~~W~~~~C~~~~~fICe~~  135 (137)
T d1tn3a_          82 MTGARIAY-KNWETEITAQPDGGKTENCAVLSGAAN---GKWFDKRCRDQLPYICQFG  135 (137)
T ss_dssp             TTSCBCSC-CCBCCTTTCSSCCGGGCCEEEEETTTT---TEEEEECTTSCEEEEEEEE
T ss_pred             CCCCeeee-eeeccccccCCCCCCcceeEEEEeCCC---CEEEeeCCCCCEEEEEEEe
Confidence            99999987 45533   3666656778999865432   3456999999999999984

>d1uv0a_ d.169.1.1 (A:) Pancreatitis-associated protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Pancreatitis-associated protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5.6e-23  Score=182.19  Aligned_cols=131  Identities=19%  Similarity=0.243  Sum_probs=107.4

Q ss_pred             cCCCchhhhccCCeEEEEecCCcCCHHHHHhHcccC-CCeEeeeCCHhHHHHHHHHhhhcCC-CCceEEEEeccCCC---
Q psy14896         26 ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSL-DSDLANVNDADEHGFIMYQLFWQDP-QRRKWYFGGTQQSP---  100 (813)
Q Consensus        26 ~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~-~~~L~~i~~~~e~~~i~~~~~~~~~-~~~~w~g~~~~~~~---  100 (813)
                      ...||.||+.|+++||+|+... ++|.+|+..|+.+ ||+||+|+|.+|++||..++..... ...+||||.+...+   
T Consensus         2 ~~~Cp~gw~~~~~~CY~~~~~~-~~w~~A~~~C~~~~gg~La~i~s~~e~~~l~~~l~~~~~~~~~~WiGl~~~~~~~~~   80 (140)
T d1uv0a_           2 RIRCPKGSKAYGSHCYALFLSP-KSWTDADLACQKRPSGNLVSVLSGAEGSFVSSLVKSIGNSYSYVWIGLHDPTQGTEP   80 (140)
T ss_dssp             CCCCCTTCEEETTEEEEEEEEE-ECHHHHHHHHTTSTTCEECCCCSHHHHHHHHHHHTTSCTTCCEEEEEEECTTTTCC-
T ss_pred             CCccCcCcEeeCCEEEEEECCc-cCHHHHHHhhhccccceecccCCHHHHHHHHHhhhccccccceeEEeeecccccccC
Confidence            4679999999999999999984 9999999999874 8999999999999999999865433 34689999876533   


Q ss_pred             --CCeEEcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        101 --NLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       101 --~~~~W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                        ..|.|.||+++.| .+|...+|+....++|+.|....+  .+.|.+..|.....|+|+..
T Consensus        81 ~~~~w~w~dg~~~~~-~~w~~~~~~~~~~~~C~~~~~~~~--~~~W~~~~C~~~~~fICe~t  139 (140)
T d1uv0a_          81 NGEGWEWSSSDVMNY-FAWERNPSTISSPGHCASLSRSTA--FLRWKDYNCNVRLPYVCKFT  139 (140)
T ss_dssp             -CCCCEETTCCCCCC-CCBSSCGGGSSSCCSEEEEEGGGT--TCSEEEECTTSCEEEEEEEC
T ss_pred             CCCceEccCCCcccc-cccCCCCCCCCCCCCEEEEEccCC--CCeEEecCCCCCEeEEEEEC
Confidence              3599999999998 566555665556789999976654  34566999999999999974

>d1v7pb_ d.169.1.1 (B:) Snake coagglutinin beta chain {Snake (Echis multisquamatus), Ems16 [TaxId: 93050]}

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Snake coagglutinin beta chain
species: Snake (Echis multisquamatus), Ems16 [TaxId: 93050]

Probab=99.88  E-value=5.1e-23  Score=178.23  Aligned_cols=121  Identities=17%  Similarity=0.262  Sum_probs=103.9

Q ss_pred             CchhhhccCCeEEEEecCCcCCHHHHHhHccc--CCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEc
Q psy14896         29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS--LDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNE  106 (813)
Q Consensus        29 Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~--~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~  106 (813)
                      ||.||..|+++||+|+... ++|.+|+..|+.  .||+||+|+|++|++||.+++........+||||++...++.|.|.
T Consensus         1 Cp~gw~~~~~~CY~~~~~~-~~w~~A~~~C~~~~~g~~La~i~s~~e~~~l~~~~~~~~~~~~~WiGl~~~~~~~~w~W~   79 (127)
T d1v7pb_           1 CPLGWSSFDQHCYKVFEPV-KNWTEAEEICMQQHKGSRLASIHSSEEEAFVSKLASKALKFTSMWIGLNNPWKDCKWEWS   79 (127)
T ss_dssp             CCTTCEEETTEEEEEEEEE-ECHHHHHHHHHHHSTTCEECCCCSHHHHHHHHHHHHHHCSSCEEEEEEECTTTTCCCEET
T ss_pred             CCCCCEeeCCEEEEEECcc-cCHHHHHHhhcccCCCCcccchhhhhhhhhhceeecccccceeEEeeeeccCccceeEec
Confidence            9999999999999999984 999999999965  5799999999999999999886554556899999999899999999


Q ss_pred             CCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        107 DGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       107 dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      ||++++| .+| ..      +++|+.|....+  ...|.+..|.....|+|+..
T Consensus        80 dg~~~~y-~~W-~~------~~~c~~~~~~~~--~~~W~~~~C~~~~~fiCe~~  123 (127)
T d1v7pb_          80 DNARFDY-KAW-KR------RPYCTVMVVKPD--RIFWFTRGCEKSVSFVCKFL  123 (127)
T ss_dssp             TCCCCCC-CCB-CC------CCEEEEEEECSS--CEEEEEEETTSCEEEEEEEE
T ss_pred             CCCcccc-ccc-CC------CCCcEEEEEECC--CCeEEecCCCCCEEEEEEEc
Confidence            9999998 555 32      346898877655  45566999999999999984

>d1fvub_ d.169.1.1 (B:) Snake coagglutinin beta chain {Jararaca (Bothrops jararaca), botrocetin [TaxId: 8724]}

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Snake coagglutinin beta chain
species: Jararaca (Bothrops jararaca), botrocetin [TaxId: 8724]

Probab=99.88  E-value=1.7e-23  Score=180.83  Aligned_cols=121  Identities=20%  Similarity=0.304  Sum_probs=100.4

Q ss_pred             CchhhhccCCeEEEEecCCcCCHHHHHhHcc--cCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEc
Q psy14896         29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCK--SLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNE  106 (813)
Q Consensus        29 Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~--~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~  106 (813)
                      ||.||..|+++||+|+... ++|.+|+..|+  ..||+||+|++++|++||..++........+||||++...++.|.|.
T Consensus         2 Cp~gw~~~~~~CY~~~~~~-~t~~~A~~~C~~~~~gg~L~~i~s~~e~~~l~~~~~~~~~~~~~WiGl~~~~~~~~~~W~   80 (125)
T d1fvub_           2 CPPDWSSYEGHCYRFFKEW-MHWDDAEEFCTEQQTGAHLVSFQSKEEADFVRSLTSEMLKGDVVWIGLSDVWNKCRFEWT   80 (125)
T ss_dssp             CSTTCEEETTEEEEEEEEE-ECHHHHHHHHHHHSTTCEECCCSSHHHHHHHHTTCTTSCTTCCEECSCCCCSTTSCEEET
T ss_pred             CCCCCEeeCCEEEEEeCcc-CCHHHHHHhhhhccCCceecccCCHHHcccccccccccccceeEEeeeeccCcccccEec
Confidence            9999999999999999985 99999999995  45899999999999999999876544445789999998889999999


Q ss_pred             CCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        107 DGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       107 dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      ||+++.| .+|+.++|     ++|+.|....+    .|.+..|.+...|+|+..
T Consensus        81 dg~~~~~-~~w~~~~~-----~~Cv~~~~~~~----~W~~~~C~~~~~fICe~~  124 (125)
T d1fvub_          81 DGMEFDY-DDYYLIAE-----YECVASKPTNN----KWWIIPCTRFKNFVCEFQ  124 (125)
T ss_dssp             TSCCCCC-----CCSC-----CEEEEEETTTT----EEEEEETTSCEEEEEEEC
T ss_pred             CCCcccc-CCCCCCCC-----cceEEEEcCCC----EEEeeCCCCCEEEEEEEc
Confidence            9999998 67765543     56888865433    455999999999999973

>d1wmza_ d.169.1.1 (A:) Lectin CEL-I {Cucumaria echinata [TaxId: 40245]}

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Lectin CEL-I
species: Cucumaria echinata [TaxId: 40245]

Probab=99.88  E-value=7.6e-23  Score=180.87  Aligned_cols=128  Identities=20%  Similarity=0.385  Sum_probs=108.2

Q ss_pred             CCchhhhccCCeEEEEecCCcCCHHHHHhHcccCC-------CeEeeeCCHhHHHHHHHHhhhcCC-CCceEEEEeccCC
Q psy14896         28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD-------SDLANVNDADEHGFIMYQLFWQDP-QRRKWYFGGTQQS   99 (813)
Q Consensus        28 ~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~-------~~L~~i~~~~e~~~i~~~~~~~~~-~~~~w~g~~~~~~   99 (813)
                      .||.||..|+++||+|+... ++|.+|+..|+.+|       ++||+|++++|++||..++..... ...+||||++...
T Consensus         2 ~Cp~gw~~~~~~CY~~~~~~-~~~~~A~~~C~~~g~~l~~~~~~L~~i~~~~e~~~~~~~~~~~~~~~~~~WiGl~~~~~   80 (140)
T d1wmza_           2 QCPTDWEAEGDHCYRFFNTL-TTWENAHHECVSYSCSTLNVRSDLVSVHSAAEQAYVFNYWRGIDSQAGQLWIGLYDKYN   80 (140)
T ss_dssp             CCCTTCEEETTEEEEEEEEE-ECHHHHHHHHHTTCBGGGTEEEEECCCCSHHHHHHHHHHHHHHCCSSCCEEEEEECSSS
T ss_pred             CCCCCCEeeCCEEEEEECcc-CCHHHHHHHHHHhhcccccccceeeeeCCHHHHHhhhhhhccccccccceeeeeeeccc
Confidence            59999999999999999994 99999999999987       569999999999999998865432 3479999999999


Q ss_pred             CCCeEEcCCCCCCccccccCCCCCCcc-cCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        100 PNLWVNEDGTNLNELDAAFLPEPADNV-QRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       100 ~~~~~W~dgs~~~~~~~~~~~~p~~~~-~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      ++.|.|+||+++.| .+|..++|++.. .++|+.|.....   ..|.+..|.....|+|+.+
T Consensus        81 ~~~w~W~dG~~~~y-~~W~~g~P~~~~~~~~c~~~~~~~~---~~W~~~~C~~~~~fICe~~  138 (140)
T d1wmza_          81 EGDFIWTDGSKVGY-TKWAGGQPDNWNNAEDYGQFRHTEG---GAWNDNSAAAQAKYMCKLT  138 (140)
T ss_dssp             TTCCEETTCCCCCC-CCBCTTCCCCGGGCEEEEEECSSTT---TCEEEEETTCCEEEEEEEE
T ss_pred             cceeeecCCccccc-ccccccccccCCCCccEEEEEeCCC---CEEEeeCCCCCEeEEEEEe
Confidence            99999999999998 677777998754 567888754332   3455999999999999985

>d1jwib_ d.169.1.1 (B:) Snake coagglutinin beta chain {Puff adder (Bitis arietans), bitiscetin [TaxId: 8692]}

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Snake coagglutinin beta chain
species: Puff adder (Bitis arietans), bitiscetin [TaxId: 8692]

Probab=99.88  E-value=4.3e-23  Score=177.47  Aligned_cols=120  Identities=24%  Similarity=0.315  Sum_probs=100.9

Q ss_pred             CCchhhhccCCeEEEEecCCcCCHHHHHhHcccC--CCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEE
Q psy14896         28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSL--DSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVN  105 (813)
Q Consensus        28 ~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~--~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W  105 (813)
                      .||.||..|+++||+|+... ++|.+|+..|+++  ||+||+|+|.+|++||.+++........+||||.+...++.|.|
T Consensus         1 gCp~gw~~~~~~CY~~~~~~-~~w~~A~~~C~~~~~gg~L~~i~s~~e~~~l~~~~~~~~~~~~~WiGl~~~~~~~~~~W   79 (123)
T d1jwib_           1 GCLPDWSSYKGHCYKVFKVE-KTWADAEKFCKELVNGGHLMSVNSREEGEFISKLALEKMRIVLVWIGLSHFWRICPLRW   79 (123)
T ss_dssp             CCCTTCEEETTEEEEEEEEE-ECHHHHHHHHHHHSTTCEECCCCSHHHHHHHHHHHHHTTCCCEEEEEEEECGGGSCEEE
T ss_pred             CCCCCcEeeCCEEEEEeCcc-cCHHHHHHHhhhccCCccccccCCHHHhhhhhhheeccccccceEeeeeccCccceeEc
Confidence            39999999999999999994 9999999999874  89999999999999999887655455578999999988999999


Q ss_pred             cCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        106 EDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       106 ~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      +||+++.|  ++|.++|      .|+.+....+  .  |.+..|.....|+|+..
T Consensus        80 ~dgs~~~y--~~w~~~~------~c~~~~~~~~--~--W~~~~C~~~~~fiCe~k  122 (123)
T d1jwib_          80 TDGARLDY--RALSDEP------ICFVAESFHN--K--WIQWTCNRKKSFVCKYR  122 (123)
T ss_dssp             TTCCCCCS--CCSCCSC------EEEEEETTTC--C--EEEEETTSCEEEEEEEE
T ss_pred             cCCCCccc--ccCCCCC------CEEEEECCCC--e--EEecCCCCCEeEEEeEE
Confidence            99999997  4555443      5777654322  3  45999999999999973

>d1c3ab_ d.169.1.1 (B:) Snake coagglutinin beta chain {Habu snake (Trimeresurus flavoviridis), flavocetin-A [TaxId: 88087]}

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Snake coagglutinin beta chain
species: Habu snake (Trimeresurus flavoviridis), flavocetin-A [TaxId: 88087]

Probab=99.88  E-value=3.1e-23  Score=178.92  Aligned_cols=120  Identities=18%  Similarity=0.280  Sum_probs=101.5

Q ss_pred             CCchhhhccCCeEEEEecCCcCCHHHHHhHccc--CCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEE
Q psy14896         28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS--LDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVN  105 (813)
Q Consensus        28 ~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~--~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W  105 (813)
                      .||.||..|+++||+|+... ++|.+|+..|+.  .||+||+|+|++|++||.+++........+||||++...++.|.|
T Consensus         3 ~Cp~gw~~~~~~CY~~~~~~-~~w~~A~~~C~~~~~g~~L~~i~s~~e~~~l~~~~~~~~~~~~~WiGl~~~~~~~~~~W   81 (125)
T d1c3ab_           3 CCPLGWSSYDEHCYQVFQQK-MNWEDAEKFCTQQHKGSHLVSFHSSEEVDFVTSKTFPILKYDFVWIGLSNVWNECTKEW   81 (125)
T ss_dssp             CCCTTCEEETTEEEEEEEEE-ECHHHHHHHHHHHSTTCEECCCSSHHHHHHHHHHHHHHHCSCEEECSCCCTTTSSCEEE
T ss_pred             CCCCCCEEECCEEEEEECcc-cCHHHHHHhhccccCCCeecccCCHHHhhhhhhhhhccCCceeEEEEecccCcceeeEe
Confidence            59999999999999999995 999999999964  589999999999999999988654445678999999889999999


Q ss_pred             cCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        106 EDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       106 ~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      +||++++| .+|..       +++|+.|....+  .  |.+..|.....|+|+..
T Consensus        82 ~dGs~~~y-~~W~~-------~e~Cv~~~~~~~--~--W~~~~C~~~~~fICe~~  124 (125)
T d1c3ab_          82 SDGTKLDY-KAWSG-------GSDCIVSKTTDN--Q--WLSMDCSSKYYVVCKFQ  124 (125)
T ss_dssp             TTCCCCCS-CCBCC-------CCEEEEEESSSS--C--EEEEETTSCEEEEEEEE
T ss_pred             CCCCeeec-cccCC-------CCceEEEECCCC--e--EEeeCCCCCEEEEEEEe
Confidence            99999998 56633       345988865433  3  45999999999999973

>d1t8da1 d.169.1.1 (A:1-143) Low affinity immunoglobulin epsilon Fc receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Low affinity immunoglobulin epsilon Fc receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.2e-22  Score=180.26  Aligned_cols=125  Identities=17%  Similarity=0.368  Sum_probs=107.2

Q ss_pred             ccCCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeE
Q psy14896         25 LELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWV  104 (813)
Q Consensus        25 ~~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~  104 (813)
                      .|.+||.||..|+++||+|+... ++|.+|+..|+.+||+||+|++++|++||.+++    ....+|||+.+...++.|.
T Consensus         4 ~c~~Cp~gw~~~~~~CY~~~~~~-~~w~~A~~~C~~~gg~La~i~s~~e~~~l~~~~----~~~~~wiGl~~~~~~~~~~   78 (143)
T d1t8da1           4 VCNTCPEKWINFQRKCYYFGKGT-KQWVHARYACDDMEGQLVSIHSPEEQDFLTKHA----SHTGSWIGLRNLDLKGEFI   78 (143)
T ss_dssp             SSCCCCSSSEECSSEEEEEEECC-SSHHHHHHHHHHHTSBCCCCCSHHHHHHHHHHC----SSSCEEEEEEESSSSSCEE
T ss_pred             cCCCCCcccEEECCEEEEEECcc-cCHHHHHHHhhhcCCEEeeecCHHHhhhccccc----ccccccccceecCCCCccE
Confidence            35679999999999999999995 999999999999999999999999999999875    3456899999999999999


Q ss_pred             EcCCCCCCccccccCCCCCCcc-cCCeEEEEeeccccccceeeccCCCc-eeeeeeec
Q psy14896        105 NEDGTNLNELDAAFLPEPADNV-QRDYLAYSFSQSLKRWGFERVTGMEP-LLFICEAS  160 (813)
Q Consensus       105 W~dgs~~~~~~~~~~~~p~~~~-~~~c~~~~~~~~~~~l~i~~~~~~d~-~~y~C~~~  160 (813)
                      |.||+++.| .+|..++|+... .++|+.|...     ..|.+..|... ..|+|++.
T Consensus        79 w~dg~~~~~-~~w~~~~P~~~~~~~~Cv~~~~~-----g~W~~~~C~~~~~~fICek~  130 (143)
T d1t8da1          79 WVDGSHVDY-SNWAPGEPTSRSQGEDCVMMRGS-----GRWNDAFCDRKLGAWVCDRL  130 (143)
T ss_dssp             ETTSCBCSS-CCBSSSCCCSCCSCCSEEEEETT-----TEEEEECSCSCCCEEEEEEE
T ss_pred             eCCCCcccc-ccccccCCCCCCCCCCEEEEcCC-----CEEEeeCCCCCccCeEEEEC
Confidence            999999988 677777987654 5689888532     33559999876 58999984

>d1j34b_ d.169.1.1 (B:) Snake coagglutinin beta chain {Habu snake (Trimeresurus flavoviridis) [TaxId: 88087]}

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Snake coagglutinin beta chain
species: Habu snake (Trimeresurus flavoviridis) [TaxId: 88087]

Probab=99.88  E-value=3.3e-23  Score=178.17  Aligned_cols=119  Identities=19%  Similarity=0.367  Sum_probs=101.3

Q ss_pred             CchhhhccCCeEEEEecCCcCCHHHHHhHccc--CCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEc
Q psy14896         29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS--LDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNE  106 (813)
Q Consensus        29 Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~--~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~  106 (813)
                      ||.||..|+++||+|+... ++|.+|+.+|+.  .||+||+|++++|++||.+++........+||||++...++.|.|.
T Consensus         2 Cp~gw~~~~~~CY~~~~~~-~~~~~A~~~C~~~~~gg~L~~i~s~~e~~~l~~~~~~~~~~~~~WiGl~~~~~~~~w~W~   80 (123)
T d1j34b_           2 CPSDWSSYEGHCYKPFSEP-KNWADAENFCTQQHAGGHLVSFQSSEEADFVVKLAFQTFGHSIFWMGLSNVWNQCNWQWS   80 (123)
T ss_dssp             CCTTSEEETTEEEEEEEEE-ECHHHHHHHHHHHSTTCEECCCSSHHHHHHHHHHHHHHHCSCEEECSCCSCSTTSCEEET
T ss_pred             CCCCCEeECCEEEEEEccc-cCHHHHHHHHHhccCCCcccccCCHhHhhhhhhhhccccceeEEeeceecccccceeecC
Confidence            9999999999999999984 999999999964  5899999999999999999886554556799999999899999999


Q ss_pred             CCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        107 DGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       107 dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      ||++++| .+|..       +++|+.|....+  .|  .+..|.....|+|+..
T Consensus        81 dg~~~~y-~~W~~-------~~~Cv~~~~~~~--~W--~~~~C~~~~~fiCe~~  122 (123)
T d1j34b_          81 NAAMLRY-KAWAE-------ESYCVYFKSTNN--KW--RSRACRMMAQFVCEFQ  122 (123)
T ss_dssp             TCCCCCC-CCBSC-------SCEEEEEETTSC--CB--EEEETTSCEEEEEEEE
T ss_pred             CCCcccc-cCCCC-------CCCeEEEECCCC--EE--EeeCCCCCEeEEEEEc
Confidence            9999987 56532       356888865433  44  5999999999999973

>d1ypqa1 d.169.1.1 (A:140-270) Oxidised low density lipoprotein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Oxidised low density lipoprotein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1e-22  Score=178.08  Aligned_cols=124  Identities=19%  Similarity=0.317  Sum_probs=103.5

Q ss_pred             CCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEc
Q psy14896         27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNE  106 (813)
Q Consensus        27 ~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~  106 (813)
                      .+||.||..|+++||+|+.. +++|.+|+..|+.+||+||+|+|++|++||.+++..  ....+||||.+...++.|.|.
T Consensus         3 ~~Cp~gw~~~~~~CY~~~~~-~~tw~~A~~~C~~~g~~La~i~s~~e~~~l~~~~~~--~~~~~WiGl~~~~~~~~w~w~   79 (131)
T d1ypqa1           3 APCPQDWIWHGENCYLFSSG-SFNWEKSQEKCLSLDAKLLKINSTADLDFIQQAISY--SSFPFWMGLSRRNPSYPWLWE   79 (131)
T ss_dssp             CSSCTTSEEETTEEEEECSS-CBCHHHHHHHHHHTTCEECCCCSHHHHHHHHHHHTT--CCCCEEEEEEESSTTSCCEET
T ss_pred             CCCCCCCEEECCEEEEEECC-ccCHHHHHHHHHHcCCeeccchhhhhhhhhhhhhhc--cCCceEEEEEecCCCCceEeC
Confidence            57999999999999999998 499999999999999999999999999999988743  235789999999999999999


Q ss_pred             CCCCCCccccccC-CCCCC-cccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        107 DGTNLNELDAAFL-PEPAD-NVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       107 dgs~~~~~~~~~~-~~p~~-~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      ||+++.+ ..||. ++|+. ...++|+.|..  +  .  |.+..|.....|+|+++
T Consensus        80 dg~~~~~-~~~~~~~~~~~~~~~~~C~~~~~--~--~--w~~~~C~~~~~~ICek~  128 (131)
T d1ypqa1          80 DGSPLMP-HLFRVRGAVSQTYPSGTCAYIQR--G--A--VYAENCILAAFSICQKK  128 (131)
T ss_dssp             TSCBCCT-TSCCEEESCSCCCTTCEEEEEET--T--E--EEEEETTSCBEEEEEEE
T ss_pred             CCCCccc-cccccCCCCCCCCCCCCEEEEEC--C--e--EEEeCCCCCEeEEEeEE
Confidence            9999987 34443 34443 33677888732  2  3  44899999999999985

>d1qo3c_ d.169.1.1 (C:) NK cell receptor {Mouse (Mus musculus), ly49-a [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: NK cell receptor
species: Mouse (Mus musculus), ly49-a [TaxId: 10090]

Probab=99.87  E-value=9.7e-23  Score=177.66  Aligned_cols=124  Identities=20%  Similarity=0.284  Sum_probs=99.9

Q ss_pred             ccccCCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCC
Q psy14896         23 DELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNL  102 (813)
Q Consensus        23 ~~~~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~  102 (813)
                      .+....|+.+|..|+++||+|+... ++|.+|+..|+.+||+||+|++++|++||..++    ....+||||.+...++.
T Consensus         8 ~~~~~~c~~~W~~~~~~CY~~~~~~-~tw~~A~~~C~~~g~~La~i~s~~e~~~l~~~~----~~~~~WIGl~~~~~~~~   82 (133)
T d1qo3c_           8 QHTGRGDKVYWFCYGMKCYYFVMDR-KTWSGCKQTCQSSSLSLLKIDDEDELKFLQLVV----PSDSCWVGLSYDNKKKD   82 (133)
T ss_dssp             CC-----CEEEEEETTEEEEEEEEE-ECHHHHHHHHHHTTCEECCCCSHHHHHHHHHHS----CSSCEEEEEEEEGGGTE
T ss_pred             ccCCCCCCCceEEECCEEEEEECcc-CCHHHHHHHHHhcCCEEeEEeecceeeehhccc----ccceeEEEEEEcCCCCC
Confidence            3456679999999999999999995 999999999999999999999999999998886    34578999999888899


Q ss_pred             eEEcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        103 WVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       103 ~~W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      |.|+||+++.+  .+| .++.+...+.|+.|..  +  .  |.+..|.....|+|++.
T Consensus        83 w~W~dg~~~~~--~~~-~~~~~~~~~~C~~l~~--~--~--w~~~~C~~~~~~ICek~  131 (133)
T d1qo3c_          83 WAWIDNRPSKL--ALN-TRKYNIRDGGCMLLSK--T--R--LDNGNCDQVFICICGKR  131 (133)
T ss_dssp             EEETTSCCCSS--CCC-TTSSCGGGCSEEEECS--S--C--EEEECTTSCEEEEEEEE
T ss_pred             EEECCCCcccc--ccc-cCCCCCCCCCEEEEEC--C--E--EEEcCCCCCEEEEEeEE
Confidence            99999999876  233 3333344678998732  2  3  55999999999999984

>d1umrc_ d.169.1.1 (C:) Snake coagglutinin beta chain {South american rattlesnake (Crotalus durissus terrificus), convulxin [TaxId: 8732]}

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Snake coagglutinin beta chain
species: South american rattlesnake (Crotalus durissus terrificus), convulxin [TaxId: 8732]

Probab=99.87  E-value=7.7e-23  Score=176.42  Aligned_cols=120  Identities=20%  Similarity=0.338  Sum_probs=101.6

Q ss_pred             CCchhhhccCCeEEEEecCCcCCHHHHHhHcccC--CCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEE
Q psy14896         28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSL--DSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVN  105 (813)
Q Consensus        28 ~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~--~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W  105 (813)
                      .||.||..|+++||+|+... ++|.+|+..|+.+  ||+||+|++++|++||.+++........+||||++...++.|.|
T Consensus         3 ~Cp~gw~~~~~~CY~~~~~~-~~w~~A~~~C~~~~~gg~La~i~~~~e~~~l~~~~~~~~~~~~~WIGl~~~~~~~~w~W   81 (125)
T d1umrc_           3 CCPSHWSSYDRYCYKVFKQE-MTWADAEKFCTQQHTGSHLVSFHSTEEVDFVVKMTHQSLKSTFFWIGANNIWNKCNWQW   81 (125)
T ss_dssp             CCCTTCEEETTEEEEEEEEE-ECHHHHHHHHHHHSTTCEECCCSSHHHHHHHHHHHHTTCSSSEEECSCCCTTTSSCEEE
T ss_pred             CCCccCEEECCEEEEEECCc-cCHHHHHHhhcccCCCCcccccCCHHHhhhhhhhhcccccceeEEEeeeccccccceEe
Confidence            59999999999999999995 9999999999764  89999999999999999988655445679999999888999999


Q ss_pred             cCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        106 EDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       106 ~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      .||+++.| .+| .+      +++|+.+....+  .  |.+..|.+...|+|+..
T Consensus        82 ~dgs~~~y-~~w-~~------~~~c~~~~~~~~--~--W~~~~C~~~~~fICe~~  124 (125)
T d1umrc_          82 SDGTKPEY-KEW-HE------EFECLISRTFDN--Q--WLSAPCSDTYSFVCKFE  124 (125)
T ss_dssp             TTSCCCSS-CCB-CC------CCEEEEEESSCS--C--EEEEETTSCEEEEEEEE
T ss_pred             cCCCcccc-cCc-CC------cCCeeEEECCCC--e--EEeeCCCCCEEEEEEEe
Confidence            99999997 555 32      346888765433  3  45999999999999973

>d1sb2b1 d.169.1.1 (B:2-128) Snake coagglutinin beta chain {Malayan pit viper (Calloselasma rhodostoma), rhodocetin [TaxId: 8717]}

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Snake coagglutinin beta chain
species: Malayan pit viper (Calloselasma rhodostoma), rhodocetin [TaxId: 8717]

Probab=99.87  E-value=2.5e-22  Score=173.81  Aligned_cols=120  Identities=19%  Similarity=0.329  Sum_probs=99.3

Q ss_pred             CCchhhhccCCeEEEEecCCcCCHHHHHhHccc--CCCeEeeeCCHhHHHHHHHHhhhc--CCCCceEEEEeccCCCCCe
Q psy14896         28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS--LDSDLANVNDADEHGFIMYQLFWQ--DPQRRKWYFGGTQQSPNLW  103 (813)
Q Consensus        28 ~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~--~~~~L~~i~~~~e~~~i~~~~~~~--~~~~~~w~g~~~~~~~~~~  103 (813)
                      .||.||..|+++||+|+... ++|.+|+..|+.  .||+||+|+|++|++||..++...  .....+||||++    +.|
T Consensus         2 ~Cp~gw~~~~~~CY~~~~~~-~tw~~A~~~C~~~~~gg~La~i~s~~e~~fl~~~~~~~~~~~~~~~WiGl~~----~~~   76 (127)
T d1sb2b1           2 RCPTTWSASKLYCYKPFKEK-KTWIEAERFCAKQAENGHLVSIGSAAEADFLDLVIVVNFDKQRYRAWTGLTE----RNL   76 (127)
T ss_dssp             CCCTTCEECSSEEEEEEEEE-ECHHHHHHHHHHHSTTCEECCCCSHHHHHHHHHHHHHHC---CCCEEEEEEE----CCC
T ss_pred             cCCCCCeecCCEEEEEECee-cCHHHHHHHHHhhcCCcccccccCHHHHHHHHHHHhhhccccccceeeeecc----cce
Confidence            59999999999999999995 999999999975  589999999999999999887443  223468999976    359


Q ss_pred             EEcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        104 VNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       104 ~W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      .|+||+++.| .+|+.+++     ++|+.|....+  ...|.+..|.....|+|+.+
T Consensus        77 ~W~dGs~~~y-~nw~~~~~-----~~c~~~~~~~~--~~~W~~~~C~~~~~fICe~P  125 (127)
T d1sb2b1          77 KWTNGASVSY-ENLYEPYI-----RKCFVVQPWEG--KSKWYKADCEEKNAFLCKFP  125 (127)
T ss_dssp             BCTTSCBCCS-CCBSSCCC-----CCEEEEEEETT--EEEEEEECTTSCEEEEEEEE
T ss_pred             eecccCCccc-cccCCCCC-----cceeEEEEeCC--CCCEEecCCCCCEEEEEEEc
Confidence            9999999998 67765443     57888876654  34566999999999999985

>d1e87a_ d.169.1.1 (A:) CD69 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: CD69
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=4.7e-22  Score=169.17  Aligned_cols=114  Identities=17%  Similarity=0.382  Sum_probs=96.0

Q ss_pred             CCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcC
Q psy14896         28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNED  107 (813)
Q Consensus        28 ~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~d  107 (813)
                      .||.||..|+++||+|+... ++|.+|+..|+.+||+||+|++++|++||..++    ....+||||.+. .++.|.|.|
T Consensus         2 sCp~gw~~~~~~CY~~~~~~-~~w~~A~~~C~~~g~~L~~i~s~~e~~~l~~~~----~~~~~WiGl~~~-~~~~w~w~d   75 (117)
T d1e87a_           2 SCSEDWVGYQRKCYFISTVK-RSWTSAQNACSEHGATLAVIDSEKDMNFLKRYA----GREEHWVGLKKE-PGHPWKWSN   75 (117)
T ss_dssp             CSCTTSEEETTEEEEECSSC-BCHHHHHHHHHHTTCEECCCCSHHHHHHHHHHH----CSSCEEEEEECC-TTSCCEETT
T ss_pred             CCCCCCEEECCEEEEEECcc-cCHHHHHHHHhhcCCEEeeecCHHHHHHHhhhh----ccceeecccccc-ccCccEeCC
Confidence            59999999999999999995 999999999999999999999999999999887    235789999875 567899999


Q ss_pred             CCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        108 GTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       108 gs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      |+++.   +|....+    .++|+.|..  +  .  |.+..|.+...|+|+++
T Consensus        76 g~~~~---~w~~~~~----~~~C~~l~~--~--~--w~~~~C~~~~~~ICekp  115 (117)
T d1e87a_          76 GKEFN---NWFNVTG----SDKCVFLKN--T--E--VSSMECEKNLYWICNKP  115 (117)
T ss_dssp             SCBCC---CSSCCBS----SCSEEEEET--T--E--EEEECTTSCBEEEEEEE
T ss_pred             CCccc---CccCCCC----CCcEEEEEC--C--E--EEEecCCCCEEEEEEEe
Confidence            99754   4543333    468998842  2  3  55999999999999985

>d1jwia_ d.169.1.1 (A:) Snake coagglutinin alpha chain {Puff adder (Bitis arietans), bitiscetin [TaxId: 8692]}

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Snake coagglutinin alpha chain
species: Puff adder (Bitis arietans), bitiscetin [TaxId: 8692]

Probab=99.86  E-value=2e-22  Score=174.08  Aligned_cols=120  Identities=19%  Similarity=0.305  Sum_probs=98.5

Q ss_pred             CchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcC--CCCceEEEEeccCC--CCCeE
Q psy14896         29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQD--PQRRKWYFGGTQQS--PNLWV  104 (813)
Q Consensus        29 Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~--~~~~~w~g~~~~~~--~~~~~  104 (813)
                      ||.||..|+++||+|+... ++|.+|+..|+.+||+||+|+|++|++||.+++....  ....+||||++...  ++.|.
T Consensus         1 Cp~gw~~~~~~CY~~~~~~-~~w~~A~~~C~~~g~~La~i~s~~e~~~i~~~~~~~~~~~~~~~WiGl~~~~~~~~~~~~   79 (124)
T d1jwia_           1 CLPDWSSYKGHCYKVFKKV-GTWEDAEKFCVENSGHLASIDSKEEADFVTKLASQTLTKFVYDAWIGLRDESKTQQCSPQ   79 (124)
T ss_dssp             CCTTSEEETTEEEEEEEEE-ECHHHHHHHHHHTTCEECCCCSHHHHHHHHHHHHHHC--CCSCEEEEEEECCSSSSSCSB
T ss_pred             CCCCCEeeCCEEEEEECcc-cCHHHHHHHHHhcCCeeeeeehHHHHHHHHHHHhccccccccceeeEeeeccCCCcccee
Confidence            9999999999999999984 9999999999999999999999999999998875432  33478999987654  45789


Q ss_pred             EcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeee
Q psy14896        105 NEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEA  159 (813)
Q Consensus       105 W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~  159 (813)
                      |.||+++.| .+|  ++|     .+|+.|.....  ...|.+..|.....|+|++
T Consensus        80 W~dgs~~~y-~n~--~~p-----~~c~~~~~~~~--~~~W~~~~C~~~~~fICet  124 (124)
T d1jwia_          80 WTDGSSVVY-ENV--DEP-----TKCFGLDVHTE--YRTWTDLPCGEKNPFICKS  124 (124)
T ss_dssp             CTTSCBCCS-CCB--SSC-----CCEEEECGGGT--TSSEEEECTTSCEEEEEEC
T ss_pred             cCCCCcccc-cCC--CCC-----CccEEEEEecC--CCCEEccCCCCCEeeEeCC
Confidence            999999987 444  344     35888755433  3456699999999999984

>d1j34a_ d.169.1.1 (A:) Snake coagglutinin alpha chain {Habu snake (Trimeresurus flavoviridis) [TaxId: 88087]}

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Snake coagglutinin alpha chain
species: Habu snake (Trimeresurus flavoviridis) [TaxId: 88087]

Probab=99.86  E-value=2.1e-22  Score=175.20  Aligned_cols=122  Identities=21%  Similarity=0.326  Sum_probs=100.6

Q ss_pred             CchhhhccCCeEEEEecCCcCCHHHHHhHccc--CCCeEeeeCCHhHHHHHHHHhhhc--CCCCceEEEEeccCCCC--C
Q psy14896         29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS--LDSDLANVNDADEHGFIMYQLFWQ--DPQRRKWYFGGTQQSPN--L  102 (813)
Q Consensus        29 Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~--~~~~L~~i~~~~e~~~i~~~~~~~--~~~~~~w~g~~~~~~~~--~  102 (813)
                      ||.||..|+++||+|+... ++|.+|+..|+.  .||+||+|++++|++||.+++...  .....+||||.+...++  .
T Consensus         2 Cp~gw~~~~~~CY~~~~~~-~~~~~A~~~C~~~~~g~~L~~i~s~~e~~~l~~~~~~~~~~~~~~~WIGl~~~~~~~~~~   80 (129)
T d1j34a_           2 CPSGWSSYEGHCYKPFKLY-KTWDDAERFCTEQAKGGHLVSIESAGEADFVAQLVTENIQNTKSYVWIGLRVQGKEKQCS   80 (129)
T ss_dssp             CCTTCEEETTEEEEEEEEE-ECHHHHHHHHHHHSTTCEECCCCSHHHHHHHHHHHHHHCCCTTCCEEEEEEECSSCSCSC
T ss_pred             CCCcCEeeCCEEEEEECcc-cCHHHHHHhhhhccCCccccccCCHHHHHHHHhhhccccccccceEEeeeeccccccccc
Confidence            9999999999999999984 999999999964  699999999999999999887443  22346899999776544  5


Q ss_pred             eEEcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeee
Q psy14896        103 WVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEA  159 (813)
Q Consensus       103 ~~W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~  159 (813)
                      |.|+||+++.| .+|..++|+     +|+.|....+  ...|.+..|.....|+|++
T Consensus        81 ~~W~dgs~~~y-~~W~~~ep~-----~c~~~~~~~~--~~~W~~~~C~~~~~fICea  129 (129)
T d1j34a_          81 SEWSDGSSVSY-ENWIEAESK-----TCLGLEKETG--FRKWVNIYCGQQNPFVCEA  129 (129)
T ss_dssp             CBCTTSCBCCC-CCBCGGGSC-----CEEEECGGGT--TCSBEEECTTSCEEEEEEC
T ss_pred             eecCCCCcccc-cccCCCCCC-----cEEEEEccCC--CCCEEecCCCCCcceEecC
Confidence            99999999998 677666774     5888865544  2345699999999999985

>d3bdwa1 d.169.1.1 (A:59-179) CD94 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: CD94
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=8e-23  Score=175.30  Aligned_cols=118  Identities=24%  Similarity=0.411  Sum_probs=100.8

Q ss_pred             CCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcC
Q psy14896         28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNED  107 (813)
Q Consensus        28 ~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~d  107 (813)
                      +||.||..|+++||+|+... ++|.+|+.+|+.+||+||+|++++|++||..      ....+||||.+...++.|.|.|
T Consensus         2 ~Cp~gw~~~~~~CY~~~~~~-~~w~~A~~~C~~~g~~La~i~s~~~~~fl~~------~~~~~WiGl~~~~~~~~w~w~d   74 (121)
T d3bdwa1           2 SCQEKWVGYRCNCYFISSEQ-KTWNESRHLCASQKSSLLQLQNTDELDFMSS------SQQFYWIGLSYSEEHTAWLWEN   74 (121)
T ss_dssp             CCTTTCEEETTEEEEECSSC-BCHHHHHHHHHHTTCEECCCSCGGGGGGGTT------CCCCEECSEEEETTTTEEEETT
T ss_pred             cCCCCcEEECCEEEEEEccc-cCHHHHHHHHhhcCCcccceeeeeeeeEeee------cccceEEEEeecCccceeEeCC
Confidence            49999999999999999995 9999999999999999999999999999853      2457899999998899999999


Q ss_pred             CCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        108 GTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       108 gs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      |+++.+ ..|...+|.+  .++|+.|...     ..|.+..|.....|+|++.
T Consensus        75 g~~~~~-~~w~~~~~~~--~~~C~~~~~~-----g~w~~~~C~~~~~fICek~  119 (121)
T d3bdwa1          75 GSALSQ-YLFPSFETFN--TKNCIAYNPN-----GNALDESCEDKNRYICKQQ  119 (121)
T ss_dssp             SCBCCT-TTSGGGGGCC--TTSEEEEETT-----TEEEEECTTSCBEEEEEEC
T ss_pred             CCcccc-cccCCCCCCC--CCCEEEEECC-----CEEEeeCCCCCEEEEEeEE
Confidence            999987 4444447765  5789988532     2455999999999999984

>d1sb2a1 d.169.1.1 (A:1-132) Snake coagglutinin alpha chain {Malayan pit viper (Calloselasma rhodostoma), rhodocetin [TaxId: 8717]}

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Snake coagglutinin alpha chain
species: Malayan pit viper (Calloselasma rhodostoma), rhodocetin [TaxId: 8717]

Probab=99.86  E-value=6.4e-22  Score=172.69  Aligned_cols=123  Identities=18%  Similarity=0.313  Sum_probs=102.3

Q ss_pred             CchhhhccCCeEEEEecCCcCCHHHHHhHccc--CCCeEeeeCCHhHHHHHHHHhhhc--CCCCceEEEEecc--CCCCC
Q psy14896         29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS--LDSDLANVNDADEHGFIMYQLFWQ--DPQRRKWYFGGTQ--QSPNL  102 (813)
Q Consensus        29 Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~--~~~~L~~i~~~~e~~~i~~~~~~~--~~~~~~w~g~~~~--~~~~~  102 (813)
                      ||.||..|+++||+|+... ++|.+|+..|+.  .||+||+|+|++|++||.+++...  .....+||||.+.  ..++.
T Consensus         2 Cp~gw~~~~~~CY~~~~~~-~~~~~A~~~C~~~~~g~~L~~i~s~~e~~~i~~~~~~~~~~~~~~~WiGl~~~~~~~~~~   80 (132)
T d1sb2a1           2 CPDGWSSTKSYCYRPFKEK-KTWEEAERFCTEQEKEAHLVSMENRLEAVFVDMVMENNFENKIYRSWIGLKIENKGQRSN   80 (132)
T ss_dssp             CCTTCEECSSEEEEEEEEE-ECHHHHHHHHHTSSSCCEECCCSSHHHHHHHHHHHHHHTTTCCEEEEEEEEEECSSTTSS
T ss_pred             CCCcCEEECCEEEEEECcc-cCHHHHHHHHhhccCCccccccCCHHHHHHHHHHHhcccccccchhhhhhhccccccccc
Confidence            9999999999999999995 999999999964  589999999999999999988543  2334789999854  35678


Q ss_pred             eEEcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        103 WVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       103 ~~W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      |.|.||+++.| .+|+.+.     .++|+.|....+  ...|.+..|.+...|+|+..
T Consensus        81 ~~W~dG~~~~y-~n~~~~~-----~~~C~~~~~~~~--~~~W~~~~C~~~~~fICe~~  130 (132)
T d1sb2a1          81 LEWSDGSSISY-ENLYEPY-----MEKCFLMDHQSG--LPKWHTADCEEKNVFMCKFQ  130 (132)
T ss_dssp             EEETTCCCCCC-CCBSSCC-----CEEEEEEEESSS--SCEEEEECTTSCEEEEEEEE
T ss_pred             eecccCCcccc-eecCCCC-----CccEEEEEcCCC--CCcEEecCCCCCEeEEEEEe
Confidence            99999999998 6776543     367999977654  34566999999999999974

>d3c8ja1 d.169.1.1 (A:138-259) NK cell receptor {Mouse (Mus musculus), ly49-c [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: NK cell receptor
species: Mouse (Mus musculus), ly49-c [TaxId: 10090]

Probab=99.86  E-value=1.4e-22  Score=173.85  Aligned_cols=119  Identities=20%  Similarity=0.312  Sum_probs=100.8

Q ss_pred             CCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcC
Q psy14896         28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNED  107 (813)
Q Consensus        28 ~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~d  107 (813)
                      .|+.||..|+++||+|+... ++|.+|+..|+.+||+||+|+|++|++||.+++    ....+||||.+...++.|.|+|
T Consensus         1 ~~~k~W~~~~~~CY~~~~~~-~tw~~A~~~C~~~g~~La~i~s~~e~~fi~~~~----~~~~~WIGl~~~~~~~~w~W~d   75 (122)
T d3c8ja1           1 RGVKYWFCYSTKCYYFIMNK-TTWSGCKANCQHYGVPILKIEDEDELKFLQRHV----IPGNYWIGLSYDKKKKEWAWID   75 (122)
T ss_dssp             CCCEEEEEEETEEEEEEEEE-ECHHHHHHHHHHTTCCBCCCCSHHHHHHHHHHS----CSSCEEEEEEEETTTTEEEETT
T ss_pred             CCCcccEEECCEEEEEeCCc-CCHHHHHHHHHhCCCcccceehHHHhhhhhhhh----eeeeeEEEEEEcCCCCcEEECC
Confidence            48999999999999999984 999999999999999999999999999999886    3357899999988899999999


Q ss_pred             CCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        108 GTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       108 gs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      |+++.+ ..|+.+++.  ..+.|+.|..      ..|.+..|.....|+|++.
T Consensus        76 g~~~~~-~~~~~~~~~--~~~~Cv~~~~------~~w~~~~C~~~~~~ICek~  119 (122)
T d3c8ja1          76 NGPSKL-DMKIKKMNF--KSRGCVFLSK------ARIEDIDCNIPYYCICGKK  119 (122)
T ss_dssp             SCCCTT-HHHHHTTCC--CSSSEEEECS------SCEEEECTTSCEEEEEEEE
T ss_pred             CCcccc-cccCCCCCC--CCCCEEEEEC------CEEEEcCCCCCEeEEEeEE
Confidence            999987 344444333  3578988732      2355999999999999985

>d1dv8a_ d.169.1.1 (A:) H1 subunit of the asialoglycoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: H1 subunit of the asialoglycoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.6e-21  Score=169.33  Aligned_cols=120  Identities=25%  Similarity=0.428  Sum_probs=100.0

Q ss_pred             CchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcCC
Q psy14896         29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDG  108 (813)
Q Consensus        29 Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~dg  108 (813)
                      ||.||..|+++||+|+... ++|.+|+.+|+.+||+||+|++++|++||.+++    ....+|||+.+.  ++.|.|+||
T Consensus         1 Cp~gw~~~~~~CY~~~~~~-~~w~~A~~~C~~~g~~La~i~~~~e~~~i~~~~----~~~~~WiG~~~~--~~~~~W~dg   73 (128)
T d1dv8a_           1 CPVNWVEHERSCYWFSRSG-KAWADADNYCRLEDAHLVVVTSWEEQKFVQHHI----GPVNTWMGLHDQ--NGPWKWVDG   73 (128)
T ss_dssp             CCTTCEEETTEEEEECSSC-BCHHHHHHHHHHTTCEECCCCSHHHHHHHHHHH----CSSCEEEEEECT--TSSCEETTC
T ss_pred             CCCCCEEECCEEEEEECCc-cCHHHHHHHHhhcCCEEeeecccchhhhhhccc----cceeeeeecccc--CCceEEeec
Confidence            9999999999999999995 999999999999999999999999999999987    345789999874  578999999


Q ss_pred             CCCCc-cccccCCCCCCc------ccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        109 TNLNE-LDAAFLPEPADN------VQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       109 s~~~~-~~~~~~~~p~~~------~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      +.+.. +.+|..++|++.      ..++|+.|..     ...|.+..|.....|+|++.
T Consensus        74 s~~~~~~~~W~~~~P~~~~~~~~~~~~~C~~~~~-----~~~w~~~~C~~~~~fICe~~  127 (128)
T d1dv8a_          74 TDYETGFKNWRPEQPDDWYGHGLGGGEDCAHFTD-----DGRWNDDVCQRPYRWVCETE  127 (128)
T ss_dssp             CCSTTSCCCBCTTCCCCCCTTSSSSCCCEEEECT-----TSCEEEECTTSCBEEEEEEE
T ss_pred             cccCCcceeeccCCCCccccccCCCCcceEEECC-----CCEEEeEcCCCCEEEEEEEE
Confidence            97653 356666688752      2457988743     23455999999999999984

>d1oz7a_ d.169.1.1 (A:) Snake coagglutinin alpha chain {Saw-scaled viper (Echis carinatus), echicetin [TaxId: 40353]}

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Snake coagglutinin alpha chain
species: Saw-scaled viper (Echis carinatus), echicetin [TaxId: 40353]

Probab=99.85  E-value=7.2e-22  Score=172.22  Aligned_cols=123  Identities=15%  Similarity=0.233  Sum_probs=100.7

Q ss_pred             CchhhhccCCeEEEEecCCcCCHHHHHhHcccCC--CeEeeeCCHhHHHHHHHHhhhcC-CCCceEEEEeccCCCC--Ce
Q psy14896         29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDLANVNDADEHGFIMYQLFWQD-PQRRKWYFGGTQQSPN--LW  103 (813)
Q Consensus        29 Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~--~~L~~i~~~~e~~~i~~~~~~~~-~~~~~w~g~~~~~~~~--~~  103 (813)
                      ||.||..|+++||+|+... ++|.+|+.+|+.+|  |+||+|+|++|++||..++.... ....+||||++...++  .|
T Consensus         2 Cp~gw~~~~~~CY~~~~~~-~~w~~A~~~C~~~g~~g~L~~i~s~~e~~fi~~~~~~~~~~~~~~WIGl~~~~~~~~~~~   80 (131)
T d1oz7a_           2 CPPGWSSNGVYCYMLFKEP-KTWDEAEKFCNKQGKDGHLLSIESKKEEILVDIVVSENIGKMYKIWTGLSERSKEQHCSS   80 (131)
T ss_dssp             CCTTCEEETTEEEEEEEEE-ECHHHHHHHHHHHSTTCEECCCCSHHHHHHHHHHHHHHSCCCSEEEEEEEECCCGGGSCC
T ss_pred             CCCCCEEECCEEEEEECcc-cCHHHHHhhhhccCCCccccccCCHHHhhhhhhheecccCCCccEEEEEEecCccccccc
Confidence            9999999999999999984 99999999999876  99999999999999999885443 3457999999877655  58


Q ss_pred             EEcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeecc
Q psy14896        104 VNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEASI  161 (813)
Q Consensus       104 ~W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~~  161 (813)
                      .|.||+.+.+ .+++.      ..++|+.|....+  .+.|.+..|.....|+|+.+.
T Consensus        81 ~W~dgs~~~~-~~~~~------~~~~C~~~~~~~~--~~~W~~~~C~~~~~fICe~~~  129 (131)
T d1oz7a_          81 RWSDGSFFRS-YEIAI------RYSECFVLEKQSV--FRTWVATPCENTFPFMCKYPV  129 (131)
T ss_dssp             BCSSSBCCSC-CCCCC------SCCCEEEEEGGGT--TCSEEEECTTSCEEEEEEECT
T ss_pred             ccCCCCcccC-CccCC------CCCCEEEEEecCC--CCcEEecCCCCCEeEEEeEeC
Confidence            8999998776 23322      2368999976554  345669999999999999963

>d1c3aa_ d.169.1.1 (A:) Snake coagglutinin alpha chain {Habu snake (Trimeresurus flavoviridis), flavocetin-A [TaxId: 88087]}

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Snake coagglutinin alpha chain
species: Habu snake (Trimeresurus flavoviridis), flavocetin-A [TaxId: 88087]

Probab=99.85  E-value=8.6e-22  Score=172.51  Aligned_cols=124  Identities=17%  Similarity=0.208  Sum_probs=101.5

Q ss_pred             CCchhhhccCCeEEEEecCCcCCHHHHHhHccc--CCCeEeeeCCHhHHHHHHHHhhhcC--CCCceEEEEeccCCC--C
Q psy14896         28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS--LDSDLANVNDADEHGFIMYQLFWQD--PQRRKWYFGGTQQSP--N  101 (813)
Q Consensus        28 ~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~--~~~~L~~i~~~~e~~~i~~~~~~~~--~~~~~w~g~~~~~~~--~  101 (813)
                      .||.||..|+++||+|+... ++|.+|+..|++  .||+||+|+|++|++||.+++....  ....+||||.+...+  +
T Consensus         3 ~Cp~gw~~~~~~CY~~~~~~-~tw~~A~~~C~~~~~g~~La~i~s~~e~~~l~~~~~~~~~~~~~~~WiGl~~~~~~~~~   81 (135)
T d1c3aa_           3 DCIPGWSAYDRYCYQAFSKP-KNWEDAESFCEEGVKTSHLVSIESSGEGDFVAQLVAEKIKTSFQYVWIGLRIQNKEQQC   81 (135)
T ss_dssp             CCCTTCEEETTEEEEEEEEE-ECHHHHHHHHHHHSTTCEECCCCSHHHHHHHHHHHHHHCCSCCSEEEEEEEECCCSSSC
T ss_pred             CCCCCCEeECCEEEEEECcc-cCHHHHHHHHhhccccccccccCCHHHHHHHHHhhhccccccccccceeeeecCCcccc
Confidence            59999999999999999984 999999999986  4899999999999999999885432  223689999876654  4


Q ss_pred             CeEEcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        102 LWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       102 ~~~W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      .|.|+||+++.| .+|..++|     ++|+.|....+  .+.|.+..|.....|+|+..
T Consensus        82 ~~~W~dgs~~~y-~nw~~~~p-----~~C~~~~~~~~--~~~W~~~~C~~~~~fICe~~  132 (135)
T d1c3aa_          82 RSEWSDASSVNY-ENLVKQFS-----KKCYALKKGTE--LRTWFNVYCGTENPEVCKYT  132 (135)
T ss_dssp             CCBCTTSCBCCC-CCBCGGGC-----CCEEEEETTSC--SCSBEEECTTSCEEEEEEEC
T ss_pred             cccccccCcccc-cccCCCCC-----CCeEEEEecCC--CCCEEccCCCCCEeEEEEEC
Confidence            688999999997 56654454     46999876544  34556999999999999974

>d1umra_ d.169.1.1 (A:) Snake coagglutinin alpha chain {South american rattlesnake (Crotalus durissus terrificus), convulxin [TaxId: 8732]}

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Snake coagglutinin alpha chain
species: South american rattlesnake (Crotalus durissus terrificus), convulxin [TaxId: 8732]

Probab=99.85  E-value=5.6e-22  Score=173.82  Aligned_cols=125  Identities=17%  Similarity=0.249  Sum_probs=102.0

Q ss_pred             CCCchhhhccCCeEEEEecCCcCCHHHHHhHccc--CCCeEeeeCCHhHHHHHHHHhhhcC--CCCceEEEEeccC--CC
Q psy14896         27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS--LDSDLANVNDADEHGFIMYQLFWQD--PQRRKWYFGGTQQ--SP  100 (813)
Q Consensus        27 ~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~--~~~~L~~i~~~~e~~~i~~~~~~~~--~~~~~w~g~~~~~--~~  100 (813)
                      ..||.||..|+++||+|+... ++|.+|+..|+.  .||+||+|+|++|++||..++....  ....+||||.+..  .+
T Consensus         2 ~~Cp~gw~~~~~~CY~~~~~~-~tw~~A~~~C~~~~~g~~La~i~s~~e~~fl~~~~~~~~~~~~~~~WiGl~~~~~~~~   80 (135)
T d1umra_           2 LHCPSDWYYYDQHCYRIFNEE-MNWEDAEWFCTKQAKGAHLVSIKSAKEADFVAWMVTQNIEESFSHVSIGLRVQNKEKQ   80 (135)
T ss_dssp             CSSCTTCEEETTEEEEEEEEE-ECHHHHHHHHHHHSTTCEECCCCSHHHHHHHHHHHHHHSCTTCCEEECSEEECCSSSS
T ss_pred             CCCCCCCEEECCEEEEEECcc-cCHHHHHHHhhccCCCcceeeehhhhhhHHHHHHhhcccCCCCcceeeeeeeeccccc
Confidence            469999999999999999995 999999999975  4899999999999999999885432  2246899987543  45


Q ss_pred             CCeEEcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        101 NLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       101 ~~~~W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      +.|.|+||+++.| .+|...+|     .+|+.|....+  ...|.+..|.....|+|+++
T Consensus        81 ~~~~W~dGs~~~y-~nw~~~~~-----~~C~~~~~~~~--~~~W~~~~C~~~~~fICe~p  132 (135)
T d1umra_          81 CSTKWSDGSSVSY-DNLLDLYI-----TKCSLLKKETG--FRKWFVASCIGKIPFVCKFP  132 (135)
T ss_dssp             SCCBCTTSCBCCC-CCBCGGGC-----CCEEEEEGGGT--TCSBEEECTTCCEEEEEEEC
T ss_pred             CccccccCCcccc-cccCCCCC-----CCEEEEEeeCC--CCcEEecCCCCCEeEEEeEC
Confidence            6899999999987 56654454     46999877655  34556999999999999985

>d1v7pa_ d.169.1.1 (A:) Snake coagglutinin alpha chain {Snake (Echis multisquamatus), Ems16 [TaxId: 93050]}

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Snake coagglutinin alpha chain
species: Snake (Echis multisquamatus), Ems16 [TaxId: 93050]

Probab=99.85  E-value=1.4e-21  Score=171.12  Aligned_cols=125  Identities=16%  Similarity=0.257  Sum_probs=101.9

Q ss_pred             CCCchhhhccCCeEEEEecCCcCCHHHHHhHcccC--CCeEeeeCCHhHHHHHHHHhhhcC--CCCceEEEEeccCCCC-
Q psy14896         27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSL--DSDLANVNDADEHGFIMYQLFWQD--PQRRKWYFGGTQQSPN-  101 (813)
Q Consensus        27 ~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~--~~~L~~i~~~~e~~~i~~~~~~~~--~~~~~w~g~~~~~~~~-  101 (813)
                      ..||.||..|+++||+|+... ++|.+|+..|+.+  ||+||+|++++|++||..++....  ....+||||.+...++ 
T Consensus         2 ~~Cp~gw~~~~~~CY~~~~~~-~~w~~A~~~C~~~~~~g~La~i~s~~e~~fi~~~~~~~~~~~~~~~WIGl~~~~~~~~   80 (134)
T d1v7pa_           2 FDCPSDWTAYDQHCYLAIGEP-QNWYEAERFCTEQAKDGHLVSIQSREEGNFVAQLVSGFMHRSEIYVWIGLRDRREEQQ   80 (134)
T ss_dssp             TTSCTTCEEETTEEEEEEEEE-ECHHHHHHHHHHHSTTCEECCCCSHHHHHHHHHHTGGGGGSSCSEEEEEEECCCSSSC
T ss_pred             CCCCCCCEEECCEEEEEECcc-cCHHHHHHhhcccCCCccccccCCHHHhHHHHhhcccccccccchhhhhccccCCcce
Confidence            369999999999999999984 9999999999764  899999999999999999885432  2346899999887766 


Q ss_pred             -CeEEcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        102 -LWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       102 -~~~W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                       .|.|+||+++.| .+|..++|+     +|+.+.....  ...|.+..|.....|+|++.
T Consensus        81 ~~~~W~dgs~~~y-~~W~~~~p~-----~~~~~~~~~~--~~~W~~~~C~~~~~fICe~~  132 (134)
T d1v7pa_          81 CNPEWNDGSKIIY-VNWKEGESK-----MCQGLTKWTN--FHDWNNINCEDLYPFVCKFS  132 (134)
T ss_dssp             SCCBCTTSCBCCC-CCBCTTCCC-----CEEEEEGGGT--TCSEEEECTTSCEEEEEEEE
T ss_pred             eeeeecCCCcccc-cccCCCCCC-----ceeEEEEecC--CCcEEeeCCCCCEEEEEEEe
Confidence             467899999987 576666774     4666654443  34466999999999999984

>d1egga_ d.169.1.1 (A:) Macrophage mannose receptor, CRD4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Macrophage mannose receptor, CRD4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.7e-21  Score=170.01  Aligned_cols=128  Identities=16%  Similarity=0.271  Sum_probs=101.4

Q ss_pred             Cchhhhcc--CCeEEEEecC---CcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCC-CCceEEEEeccCCCCC
Q psy14896         29 CPQHWVQY--RDSCYRFVKS---PLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDP-QRRKWYFGGTQQSPNL  102 (813)
Q Consensus        29 Cp~~w~~~--~~~Cy~~~~~---~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~-~~~~w~g~~~~~~~~~  102 (813)
                      ||.||..+  +++||+++..   .+++|.+|+..|+.+||+||+|+|++|++||.+++..... ...+|||+.+...++.
T Consensus         1 Cp~gW~~~~~~~~CY~~~~~~~~~~~~w~~A~~~C~~~gg~L~~i~s~~e~~~i~~~l~~~~~~~~~~wiG~~~~~~~~~   80 (136)
T d1egga_           1 CPEDWGASSRTSLCFKLYAKGKHEKKTWFESRDFCRALGGDLASINNKEEQQTIWRLITASGSYHKLFWLGLTYGSPSEG   80 (136)
T ss_dssp             CCTTCEECSSSSCEEEEECSCGGGCBCHHHHHHHHHTTTCEECCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECC----C
T ss_pred             CCCCCeeCCCCCEEEEEEecCCCcccCHHHHHHHHHHCCCEEeEEecchhhhhhhhhcccccccccccccccccccccee
Confidence            99999665  5899998532   1479999999999999999999999999999999855433 3468999999988999


Q ss_pred             eEEcCCCCCCccccccCCCCCCcc-cCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        103 WVNEDGTNLNELDAAFLPEPADNV-QRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       103 ~~W~dgs~~~~~~~~~~~~p~~~~-~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      |.|.||+++.| .+|..++|++.. .++|+.|....   .+.|.+..|.....|+|+..
T Consensus        81 ~~W~dg~~~~y-~~W~~g~P~~~~~~~~C~~~~~~~---~~~W~~~~C~~~~~fICe~~  135 (136)
T d1egga_          81 FTWSDGSPVSY-ENWAYGEPNNYQNVEYCGELKGDP---TMSWNDINCEHLNNWICQIQ  135 (136)
T ss_dssp             CCCTTSCCCCC-CCCCTTCSCGGGSCCEEEEEECST---TCCEEEEETTSCBEEEEECC
T ss_pred             eeeecCCccee-ecccCCCCCCCCCCcceEEEEcCC---CCeEEecCCCCcEeEEEEEe
Confidence            99999999987 677677887644 55799886543   34556999999999999973

>d1fvua_ d.169.1.1 (A:) Snake coagglutinin alpha chain {Jararaca (Bothrops jararaca), botrocetin [TaxId: 8724]}

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Snake coagglutinin alpha chain
species: Jararaca (Bothrops jararaca), botrocetin [TaxId: 8724]

Probab=99.84  E-value=2.7e-21  Score=169.03  Aligned_cols=123  Identities=15%  Similarity=0.271  Sum_probs=98.5

Q ss_pred             CchhhhccCCeEEEEecCCcCCHHHHHhHccc--CCCeEeeeCC-HhHHHHHHHHhhhc--CCCCceEEEEeccCC--CC
Q psy14896         29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS--LDSDLANVND-ADEHGFIMYQLFWQ--DPQRRKWYFGGTQQS--PN  101 (813)
Q Consensus        29 Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~--~~~~L~~i~~-~~e~~~i~~~~~~~--~~~~~~w~g~~~~~~--~~  101 (813)
                      ||.||..|+++||+|+.. +++|.+|+..|+.  .||+||+|++ ++|+.||..++...  .....+||||.+...  .+
T Consensus         2 Cp~gw~~~~~~CY~~~~~-~~~w~~A~~~C~~~~~g~~La~i~~~~e~~~~~~~~~~~~~~~~~~~~WIGl~~~~~~~~~   80 (133)
T d1fvua_           2 CPSGWSSYEGNCYKFFQQ-KMNWADAERFCSEQAKGGHLVSIKIYSKEKDFVGDLVTKNIQSSDLYAWIGLRVENKEKQC   80 (133)
T ss_dssp             CCTTCEEETTEEEEEEEE-EECHHHHHHHHHHHSTTCEECCCCTTSTHHHHHHHHHHHHCCSSCCEEEEEEEECCSSSSS
T ss_pred             CCCCCEEECCEEEEEECc-ccCHHHHHHHHhhccccccccccCCHHHHHHHHHhhhhccccCccccceEEEeeccccccc
Confidence            999999999999999998 4999999999985  6899999986 56788887776433  223468999986543  45


Q ss_pred             CeEEcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        102 LWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       102 ~~~W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      .|.|+||+++.| .+|..++|+     +|+.|....+  ...|.+..|.....|+|+++
T Consensus        81 ~w~W~dGs~~~y-~~w~~~~p~-----~C~~~~~~~~--~~~W~~~~C~~~~~fICe~~  131 (133)
T d1fvua_          81 SSEWSDGSSVSY-ENVVERTVK-----KCFALEKDLG--FVLWINLYCAQKNPFVCKSP  131 (133)
T ss_dssp             CCBCTTSCBCCC-CCBCGGGCC-----CEEEEETTTT--SCSEEEECTTCCEEEEEEEC
T ss_pred             ccccccCCcccc-cccCCCCCC-----CeEEEEecCC--CCeEEccCCCCCEEEEEEEC
Confidence            799999999998 576555663     6999876544  34566999999999999985

>d1r13a1 d.169.1.1 (A:110-228) Surfactant protein, lectin domain {Rat (Rattus norvegicus), SP-A [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Surfactant protein, lectin domain
species: Rat (Rattus norvegicus), SP-A [TaxId: 10116]

Probab=99.83  E-value=8.7e-21  Score=160.86  Aligned_cols=116  Identities=13%  Similarity=0.093  Sum_probs=100.7

Q ss_pred             hccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcCCCCCCc
Q psy14896         34 VQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDGTNLNE  113 (813)
Q Consensus        34 ~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~dgs~~~~  113 (813)
                      ...+++||+++.. +++|.+|++.|+.+||+||+|+|.+|++||.+++...  ...+||||.+...++.|.|.||+++.|
T Consensus         3 ~~vG~~cy~~~~~-~~~w~~A~~~C~~~gg~La~i~s~~e~~~l~~~~~~~--~~~~WiGl~~~~~~~~w~w~dg~~~~y   79 (119)
T d1r13a1           3 LSVGDKVFSTNGQ-SVNFDTIKEMCTRAGGNIAVPRTPEENEAIASIAKKY--NNYVYLGMIEDQTPGDFHYLDGASVSY   79 (119)
T ss_dssp             EEETTEEEEEEEE-EECHHHHHHHHHHTTSEECCCCSHHHHHHHHHHHHHT--TSCEEEEEEECSSTTCEEETTSCBCCS
T ss_pred             ccCccEEEEECCE-EECHHHHHHHhhhCCCEEeEEeehHHhhhhhhccccc--ceEEEEEeecCCcceeeeeeccccccc
Confidence            3568999999998 4999999999999999999999999999999988643  357999999999999999999999987


Q ss_pred             cccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeee
Q psy14896        114 LDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICE  158 (813)
Q Consensus       114 ~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~  158 (813)
                       .+|..++|++...++|+.|..     ...|.+..|.....|+|+
T Consensus        80 -~~W~~~~P~~~~~~~Cv~~~~-----~~~W~~~~C~~~~~~ICe  118 (119)
T d1r13a1          80 -TNWYPGEPRGQGKEKCVEMYT-----DGTWNDRGCLQYRLAVCE  118 (119)
T ss_dssp             -CCBCTTCCCCSSCCCEEEECT-----TSCEEEECSCSCEEEEEE
T ss_pred             -ceEEeeccCCCCCCCEEEEcC-----CCEEEecCCCCCEeEEEe
Confidence             677777998777778998853     234569999999999997

>d2msba_ d.169.1.1 (A:) Mannose-binding protein A, C-lectin domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Mannose-binding protein A, C-lectin domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=1.3e-20  Score=157.79  Aligned_cols=110  Identities=14%  Similarity=0.096  Sum_probs=94.5

Q ss_pred             eEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcCCCCCCcccccc
Q psy14896         39 SCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDGTNLNELDAAF  118 (813)
Q Consensus        39 ~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~dgs~~~~~~~~~  118 (813)
                      +||++..+ +++|.+|+..|+.+||+||+|+|++|++||.+++     ...+||||.+...+|.|.|.||++++| .+|.
T Consensus         2 k~y~~~~~-~~tw~~A~~~C~~~g~~La~i~s~~e~~~l~~~~-----~~~~WiGl~~~~~~g~~~w~dg~~~~y-~~W~   74 (112)
T d2msba_           2 KFFVTNHE-RMPFSKVKALCSELRGTVAIPRNAEENKAIQEVA-----KTSAFLGITDEVTEGQFMYVTGGRLTY-SNWK   74 (112)
T ss_dssp             CEEEEEEE-EECHHHHHHHHHHTTCEECCCSSHHHHHHHHHHH-----SSCEEEEEECSSSTTCCEETTSSBCCS-CCBC
T ss_pred             cEEEECCc-EeCHHHHHHHHHhCCCEEeeEcCHHHhhhhhhcc-----cceEEEEEeecCccccccccccccccc-cccc
Confidence            69999988 5999999999999999999999999999999886     246899999998999999999999998 6777


Q ss_pred             CCCCCCcc-cCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        119 LPEPADNV-QRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       119 ~~~p~~~~-~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      .++|++.. .++|+.|.. .    ..|.+..|.....|+|+.+
T Consensus        75 ~~eP~~~~~~~~Cv~~~~-~----~~W~~~~C~~~~~fICe~P  112 (112)
T d2msba_          75 KDEPNDHGSGEDCVTIVD-N----GLWNDISCQASHTAVCEFP  112 (112)
T ss_dssp             TTCCCCCTTCCCEEEECT-T----SCEEEECTTSCEEEEEEEC
T ss_pred             cCCCCCCCCCCCEEEEeC-C----CEEEEeCCCCcEEEEEecC
Confidence            77998754 567998842 2    2355999999999999873

>d1pwba1 d.169.1.1 (A:235-355) Surfactant protein, lectin domain {Human (Homo sapiens), SP-D [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Surfactant protein, lectin domain
species: Human (Homo sapiens), SP-D [TaxId: 9606]

Probab=99.83  E-value=3.8e-21  Score=164.28  Aligned_cols=119  Identities=16%  Similarity=0.183  Sum_probs=100.7

Q ss_pred             chhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcCCC
Q psy14896         30 PQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDGT  109 (813)
Q Consensus        30 p~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~dgs  109 (813)
                      |.|+ .++++||+++.. +++|.+|+..|+.+||+||+|+|++|++||..++...  ...+||||.+...++.|.|.||+
T Consensus         1 P~g~-~~g~~cy~~~~~-~~tw~~A~~~C~~~g~~La~i~s~~e~~~l~~~~~~~--~~~~WiGl~~~~~~~~~~w~dg~   76 (121)
T d1pwba1           1 PNGQ-SVGEKIFKTAGF-VKPFTEAQLLCTQAGGQLASPRSAAENAALQQLVVAK--NEAAFLSMTDSKTEGKFTYPTGE   76 (121)
T ss_dssp             TTEE-EETTEEEEEEEE-EEEHHHHHHHHHHTTSEECCCCSHHHHHHHHHHHHHH--TCCEECSCBCSSSTTCCBCTTSC
T ss_pred             CCcE-EECCEEEEEeCe-eECHHHHHHHHHHcCCEecceeechhhhhhhhccccc--eeeeeeeeeccCccceeeecccc
Confidence            4454 689999999999 4999999999999999999999999999999987543  34689999999899999999999


Q ss_pred             CCCccccccCCCCCCcc-cCCeEEEEeeccccccceeeccCCCceeeeee
Q psy14896        110 NLNELDAAFLPEPADNV-QRDYLAYSFSQSLKRWGFERVTGMEPLLFICE  158 (813)
Q Consensus       110 ~~~~~~~~~~~~p~~~~-~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~  158 (813)
                      ++.+ .+|..++|++.. .++|+.|.. .    ..|.+..|.....|+|+
T Consensus        77 ~~~~-~~W~~~eP~~~~~~~~C~~~~~-~----~~W~~~~C~~~~~fICe  120 (121)
T d1pwba1          77 SLVY-SNWAPGEPNDDGGSEDCVEIFT-N----GKWNDRACGEKRLVVCE  120 (121)
T ss_dssp             BCSC-CCBCTTCCCCGGGCCCEEEECT-T----SCEEEECTTSEEEEEEE
T ss_pred             cccc-ceecCCCCCCCCCceeEEEECC-C----CEEEeeCCCCCEEEEEe
Confidence            9998 566666998754 567998843 2    23559999999999997

>d1hupa1 d.169.1.1 (A:112-228) Mannose-binding protein A, C-lectin domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Mannose-binding protein A, C-lectin domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.3e-20  Score=158.13  Aligned_cols=114  Identities=17%  Similarity=0.187  Sum_probs=98.2

Q ss_pred             ccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcCCCCCCcc
Q psy14896         35 QYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDGTNLNEL  114 (813)
Q Consensus        35 ~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~dgs~~~~~  114 (813)
                      +++++||+++.+ +++|.+|+..|+.+||+||+|+|++|++||.+++     ...+||||.+...++.|.|.||+++.| 
T Consensus         2 ~vG~~~y~~~~~-~~tw~~A~~~C~~~gg~La~i~s~~e~~~l~~~~-----~~~~WiGl~~~~~~~~w~w~dg~~~~~-   74 (117)
T d1hupa1           2 QVGNKFFLTNGE-IMTFEKVKALCVKFQASVATPRNAAENGAIQNLI-----KEEAFLGITDEKTEGQFVDLTGNRLTY-   74 (117)
T ss_dssp             EETTEEEEEEEE-EEEHHHHHHHHHHTTCEECCCCSHHHHHHHHHHC-----SSCEEEEEECSSSTTCCEETTSCBCSC-
T ss_pred             cccCEEEEEcCE-EECHHHHHHHHHHCCCEEcccCCHHHHHHHhhcc-----cceEEEEeeccCcccceeecccccccc-
Confidence            578999999998 4999999999999999999999999999999886     246899999998899999999999998 


Q ss_pred             ccccCCCCCCcc-cCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        115 DAAFLPEPADNV-QRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       115 ~~~~~~~p~~~~-~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      .+|..++|++.. .++|+.|...     ..|.+..|.....|+|+.+
T Consensus        75 ~~w~~~~p~~~~~~~~Cv~~~~~-----~~W~~~~C~~~~~fICe~P  116 (117)
T d1hupa1          75 TNWNEGEPNNAGSDEDCVLLLKN-----GQWNDVPCSTSHLAVCEFP  116 (117)
T ss_dssp             CCBCTTCCCCGGGCCCEEEECTT-----SCEEEECTTSEEEEEEEEE
T ss_pred             cccCCCCCCCCCCcCCeEEECCC-----CeEEeeCCCCCEEEEEEEe
Confidence            677777887643 5689887432     3455999999999999974

>d1rdl1_ d.169.1.1 (1:) Mannose-binding protein A, C-lectin domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Mannose-binding protein A, C-lectin domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=3e-19  Score=149.13  Aligned_cols=109  Identities=17%  Similarity=0.169  Sum_probs=92.6

Q ss_pred             eEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcCCCCCCcccccc
Q psy14896         39 SCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDGTNLNELDAAF  118 (813)
Q Consensus        39 ~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~dgs~~~~~~~~~  118 (813)
                      +||++..+ +++|.+|+..|+.+||+||+|++++|++||.+++     ...+||||.+...++.|.|.||+++.| .+|.
T Consensus         1 kyy~~~~~-~~~~~~A~~~C~~~gg~La~i~s~~e~~~l~~~~-----~~~~WiGl~~~~~~~~~~w~dG~~~~y-~~W~   73 (111)
T d1rdl1_           1 KYFMSSVR-RMPLNRAKALCSELQGTVATPRNAEENRAIQNVA-----KDVAFLGITDQRTENVFEDLTGNRVRY-TNWN   73 (111)
T ss_dssp             CEEEECSS-CBCHHHHHHHHHHTTCEECCCCSHHHHHHHHHHC-----SSCEEEEEECSSSTTCCEETTSCBCCC-CCBC
T ss_pred             CEEEECCc-EeCHHHHHHHHHHcCCEEEEECCHHHhHHHhhcc-----cceeeEEeeecCccceeeeccccccee-eecc
Confidence            47887777 5999999999999999999999999999999875     346899999998999999999999998 6776


Q ss_pred             CCCCCCcc-cCCeEEEEeeccccccceeeccCCCceeeeeee
Q psy14896        119 LPEPADNV-QRDYLAYSFSQSLKRWGFERVTGMEPLLFICEA  159 (813)
Q Consensus       119 ~~~p~~~~-~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~  159 (813)
                      .++|++.. .++|+.|.. .    ..|.+..|.....|+|+.
T Consensus        74 ~geP~~~~~~~~Cv~~~~-~----g~W~d~~C~~~~~fICe~  110 (111)
T d1rdl1_          74 EGEPNNVGSGENCVVLLT-N----GKWNDVPCSDSFLVVCEF  110 (111)
T ss_dssp             TTCCCCCTTCCCEEEECT-T----SCEEEECTTSCBEEEEEE
T ss_pred             ccCCCCCCCcceEEEECC-C----CEEEeeCCCCCEEEEEEE
Confidence            67998754 567988843 2    235599999999999986

>d1kg0c_ d.169.1.1 (C:) EBV gp42 {Epstein-Barr virus [TaxId: 10376]}

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: EBV gp42
species: Epstein-Barr virus [TaxId: 10376]

Probab=99.78  E-value=9.6e-20  Score=156.87  Aligned_cols=118  Identities=13%  Similarity=0.070  Sum_probs=96.5

Q ss_pred             cCCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCC-CeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeE
Q psy14896         26 ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD-SDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWV  104 (813)
Q Consensus        26 ~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~-~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~  104 (813)
                      ...||.+|..|+++||+|+.+. ++|++|+..|++++ ++|++|++++|+.||..++.   ....+||||.+. .++.|.
T Consensus        16 ~c~~~~~~~~~~~~CY~~~~~~-~tw~~A~~~C~~~~~~~L~~i~~~~e~~fl~~~~~---~~~~~WIGL~~~-~~~~W~   90 (136)
T d1kg0c_          16 YCNTREYTFSYKGCCFYFTKKK-HTWNGCFQACAEKYPCTYFYGPTPDILPVVTRNLN---AIESLWVGVYRV-GEGNWT   90 (136)
T ss_dssp             CCCTTTCSEEETTEEEEECSSC-BCTTHHHHHHHHHSTTCEECCCCTTTHHHHHHTSC---SSCCEECSEEES-SSSSEE
T ss_pred             cCCCCCCeEeECCEEEEEEccc-CcHHHHHHHHhcCCCCcEeccCCHHHHHHHHHhcC---CCCcEEEEEEec-CCCceE
Confidence            3457999999999999999995 99999999999865 69999999999999998763   345799999864 578999


Q ss_pred             EcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        105 NEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       105 W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      |.||+++... +        ..+++|+.|....   ...|.+..|.....|+|+..
T Consensus        91 W~Dgs~~~~~-~--------~~~~~C~~l~~~~---~~~w~~~~C~~~~~~IC~~~  134 (136)
T d1kg0c_          91 SLDGGTFKVY-Q--------IFGSHCTYVSKFS---TVPVSHHECSFLKPCLCVSQ  134 (136)
T ss_dssp             ETTCSCCCCB-C--------SSCTTCEEECTTC---SSCEECSCTTSCBCBEEEEE
T ss_pred             ECCCCccccc-c--------ccccceEEEEecC---CCcEeecCCCCCcceEEEEe
Confidence            9999987652 1        1257899885433   34566999999999999974

>d1h8ua_ d.169.1.1 (A:) Eosinophil major basic protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Eosinophil major basic protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.5e-18  Score=145.80  Aligned_cols=110  Identities=19%  Similarity=0.233  Sum_probs=90.4

Q ss_pred             EEEecCCcCCHHHHHhHccc-CCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEec--cCCCCCeEEcCCCCCCccccc
Q psy14896         41 YRFVKSPLKTRNDAKLNCKS-LDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGT--QQSPNLWVNEDGTNLNELDAA  117 (813)
Q Consensus        41 y~~~~~~~~~~~~a~~~C~~-~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~--~~~~~~~~W~dgs~~~~~~~~  117 (813)
                      |+++..+ +||.+|+..|++ +||+||+|++++|++||..++... ....+||||..  ...++.|.|+||++++| .+|
T Consensus         2 Y~~~~~~-~tw~~A~~~C~~~~gg~L~sI~s~~e~~~i~~~~~~~-~~~~~WIGl~~~~~~~~~~~~W~dGs~~~y-~~W   78 (115)
T d1h8ua_           2 YLLVRSL-QTFSQAWFTCRRCYRGNLVSIHNFNINYRIQCSVSAL-NQGQVWIGGRITGSGRCRRFQWVDGSRWNF-AYW   78 (115)
T ss_dssp             EEEEEEE-ECHHHHHHHHHHHHSSEECCCCSHHHHHHHHHHHTTC-SSSEEEEEEEEECSSSCCEEEETTCCCCCC-CCB
T ss_pred             eEEECCc-cCHHHHHHHhhcccCCcCcccCHHHHHHHHHHHHhhc-CCCcEEEEEEecCCCCcceEEEecCceeec-ccc
Confidence            7888885 999999999987 799999999999999999998654 34579999863  34567899999999997 677


Q ss_pred             cCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeee
Q psy14896        118 FLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICE  158 (813)
Q Consensus       118 ~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~  158 (813)
                      ..++|++. +++|+.|....+  .  |.+..|.....|+|+
T Consensus        79 ~~~~P~~~-~~~Cv~~~~~~g--~--W~~~~C~~~~~fICe  114 (115)
T d1h8ua_          79 AAHQPWSR-GGHCVALCTRGG--Y--WRRAHCLRRLPFICS  114 (115)
T ss_dssp             CSSSCCTT-SCSEEEEETTTT--C--EEEECTTSCEEEEEE
T ss_pred             cCCCCCCC-CCCEEEEECCCC--E--EEeeCCCCCEeeEEe
Confidence            77788764 568999864432  4  459999999999997

>d1wk1a_ d.169.1.1 (A:) Hypothetical protein F28B4.3 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Hypothetical protein F28B4.3
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.75  E-value=1.3e-18  Score=154.38  Aligned_cols=117  Identities=17%  Similarity=0.164  Sum_probs=97.0

Q ss_pred             CeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcCCCCCCc----
Q psy14896         38 DSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDGTNLNE----  113 (813)
Q Consensus        38 ~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~dgs~~~~----  113 (813)
                      .+||.+..+ .++|++|+.+|+.+||+||+|++++|++||..++    ....+||||.+. .++.|.|.||+++..    
T Consensus         8 ~~~~~~~~~-~~s~~~A~~~C~~~gg~La~i~~~~e~~fi~~~~----~~~~~WiGl~~~-~~g~w~W~dg~~~~~~~~~   81 (150)
T d1wk1a_           8 VKFLTVNDD-ILSMPQARNFCASAGGYLADDLGDDKNNFYSSIA----ANTQFWIGLFKN-SDGQFYWDRGQGINPDLLN   81 (150)
T ss_dssp             CCSSSCCSS-CBCHHHHHHHHHHHTCEECCCCSHHHHHHHHHHT----TTCEEEEEEEEC-SSSCEEECCSSSSCCEECC
T ss_pred             cEEEEEeCC-ccCHHHHHHHHHhCCCEEeeeCCHHHHHHhhhcc----cccceeEeeeec-ccccccccccccccccccc
Confidence            356666667 5999999999999999999999999999999886    345799999875 678999999998762    


Q ss_pred             --cccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        114 --LDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       114 --~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                        +.+|..++|++...++|+.|....+.....|.+..|.....|+|++.
T Consensus        82 ~~~~~W~~~eP~~~~~~~C~~~~~~~~~~~~~W~~~~C~~~~~fICe~~  130 (150)
T d1wk1a_          82 QPITYWANGEPSNDPTRQCVYFDGRSGDKSKVWTTDTCATPRPFICQKH  130 (150)
T ss_dssp             CSCCCBCTTCSCCCSSCCEEEEESSCSCGGGCEEEECTTSCBCCCEECC
T ss_pred             cccccccCCCCCCCCCcceEEEeccCCCCCCceEccCCCCCEeEEEEEC
Confidence              24676669987777889999776554456677999999999999985

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.72  E-value=2.6e-18  Score=136.74  Aligned_cols=82  Identities=30%  Similarity=0.541  Sum_probs=75.6

Q ss_pred             CCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896        679 TFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI  758 (813)
Q Consensus       679 ~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  758 (813)
                      +.+..+.+|+++.|.|.+.|.|.|.|+|+|||.+|..+.++....+.|.|.++..+|+|.|+|.|.|..|..++++.|.|
T Consensus         8 ~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   87 (89)
T d1cs6a4           8 ITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTV   87 (89)
T ss_dssp             CCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeeeeeeeEEEEeecccCCEEEEEEEEeCCCEEEEEEEEEE
Confidence            34467889999999999999999999999999999988887777889999999999999999999999999999999999


Q ss_pred             Ec
Q psy14896        759 QA  760 (813)
Q Consensus       759 ~~  760 (813)
                      +.
T Consensus        88 ~A   89 (89)
T d1cs6a4          88 QA   89 (89)
T ss_dssp             EC
T ss_pred             EC
Confidence            73

>d1g1ta1 d.169.1.1 (A:1-118) E-selectin, C-lectin domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: E-selectin, C-lectin domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.8e-17  Score=139.46  Aligned_cols=114  Identities=14%  Similarity=0.172  Sum_probs=91.7

Q ss_pred             eEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcCCCCC---Cccc
Q psy14896         39 SCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDGTNL---NELD  115 (813)
Q Consensus        39 ~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~dgs~~---~~~~  115 (813)
                      .||+|+.++ ++|.+|+.+|+.+||+||+|++++|++||..++..  ....+||||.+.  ++.|.|.||+..   .+ .
T Consensus         1 ~~Y~~~~~~-~tw~~A~~~C~~~g~~La~i~s~~e~~~l~~~~~~--~~~~~WiGl~~~--~~~~~w~~~~~~~~~~~-~   74 (118)
T d1g1ta1           1 WSYNTSTEA-MTYDEASAYCQQRYTHLVAIQNKEEIEYLNSILSY--SPSYYWIGIRKV--NNVWVWVGTQKPLTEEA-K   74 (118)
T ss_dssp             CEEEECSSC-BCHHHHHHHHHHHSSEECCCCSHHHHHHHHHHSCC--CTTCEEESEEEE--TTEEEETTTCCBCCTTT-C
T ss_pred             CEEEEeCCc-cCHHHHHHHHHHCCCEEeEEccHHHhHHHHhcccc--ccceeeeccccc--ceeeeeecCCCCccccc-c
Confidence            379999995 99999999999999999999999999999998743  235789999874  568999988753   33 5


Q ss_pred             cccCCCCCCcc-cCCeEEEEeeccccccceeeccCCCceeeeee
Q psy14896        116 AAFLPEPADNV-QRDYLAYSFSQSLKRWGFERVTGMEPLLFICE  158 (813)
Q Consensus       116 ~~~~~~p~~~~-~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~  158 (813)
                      +|..++|++.. .++|+.|..........|.+..|.....|+|-
T Consensus        75 ~W~~~eP~~~~~~~~Cv~l~~~~~~~~~~W~d~~C~~~~~fIC~  118 (118)
T d1g1ta1          75 NWAPGEPNNRQKDEDCVEIYIKREKDVGMWNDERCSKKKLALCY  118 (118)
T ss_dssp             CBCTTCCCCCSTTCCEEEECTTCSSSTTCEEEECTTSCBEEEEE
T ss_pred             ccCCCCccCCCCCCCeEEEEecCCCCCCeEeccCCCCCeeEEcC
Confidence            67667997644 56899986544443556779999999999993

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=5.2e-17  Score=133.09  Aligned_cols=86  Identities=17%  Similarity=0.238  Sum_probs=76.0

Q ss_pred             CCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceee----ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEE
Q psy14896        680 FPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----NFNRILTIPNVKVEDQGEYICRASNDRSALESSVT  755 (813)
Q Consensus       680 ~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~  755 (813)
                      ....+.+|+++.|.|.+.|.|.|.|+|+|||..|..+.++.    ...++|.|.+++.+|+|.|+|.|.|..|.++.++.
T Consensus         8 ~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   87 (101)
T d2cqva1           8 EDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVN   87 (101)
T ss_dssp             CSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEE
T ss_pred             CcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCCEEEEEEE
Confidence            34678899999999999999999999999999998776542    33457999999999999999999999999999999


Q ss_pred             EEEEcCCccc
Q psy14896        756 ISIQAEPNFT  765 (813)
Q Consensus       756 l~V~~~P~~~  765 (813)
                      |.|.++|..+
T Consensus        88 l~V~~~P~pP   97 (101)
T d2cqva1          88 LTVVDKPDPP   97 (101)
T ss_dssp             EEEECSCSCC
T ss_pred             EEEEecCCCc
Confidence            9999988654

>d1g1sa1 d.169.1.1 (A:1-118) P-selectin, C-lectin domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: P-selectin, C-lectin domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2.2e-17  Score=140.12  Aligned_cols=113  Identities=13%  Similarity=0.196  Sum_probs=90.1

Q ss_pred             EEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcCCCCC--Ccccccc
Q psy14896         41 YRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDGTNL--NELDAAF  118 (813)
Q Consensus        41 y~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~dgs~~--~~~~~~~  118 (813)
                      |+|+... ++|.+|++.|+.+||+||+|+|++|++||.+++...  ...+||||.+.  ++.|.|+||+..  ..+.+|.
T Consensus         3 Y~~~~~~-~~w~~A~~~C~~~gg~La~i~s~~e~~fl~~~~~~~--~~~~WiGl~~~--~~~~~W~~~~~~~~~~~~~W~   77 (118)
T d1g1sa1           3 YHYSTKA-YSWNISRKYCQNRYTDLVAIQNKNEIDYLNKVLPYY--SSYYWIGIRKN--NKTWTWVGTKKALTNEAENWA   77 (118)
T ss_dssp             EEEEEEE-ECHHHHHHHHHHHSSEECCCCCHHHHHHHHHHSCCC--TTCEEEEEEEE--TTEEEETTTCCBCCTTTCCBC
T ss_pred             EEEECCc-cCHHHHHHHHHHcCCEEeEEeCHHHHHHHHhhhccc--cccchhhcccc--ccccceecCCCCccceecccC
Confidence            8899884 999999999999999999999999999999987432  35799999986  457888887653  3345676


Q ss_pred             CCCCCCcc-cCCeEEEEeeccccccceeeccCCCceeeeee
Q psy14896        119 LPEPADNV-QRDYLAYSFSQSLKRWGFERVTGMEPLLFICE  158 (813)
Q Consensus       119 ~~~p~~~~-~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~  158 (813)
                      .++|++.. .++|+.|..........|.+..|.....|+|-
T Consensus        78 ~~eP~~~~~~~~Cv~~~~~~~~~~~~W~d~~C~~~~~fIC~  118 (118)
T d1g1sa1          78 DNEPNNKRNNEDCVEIYIKSPSAPGKWNDEHCLKKKHALCY  118 (118)
T ss_dssp             TTCCCCTTSCCCEEEECTTCSSSTTCEEEECTTSCEEEEEE
T ss_pred             CCCCCCCCCCCCeEEEEccCCCCCCeEEeeCCCCCEeEEcC
Confidence            77997644 56899986544443556779999999999993

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.66  E-value=1.9e-16  Score=125.75  Aligned_cols=87  Identities=33%  Similarity=0.634  Sum_probs=75.9

Q ss_pred             CceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCC
Q psy14896        190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR  269 (813)
Q Consensus       190 P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~  269 (813)
                      |.|+..|.+..+..|     +++.|.|.+.|.|.|+|+|+|||.+|          ..+.++.+.+++|.|.+. +.+|+
T Consensus         2 P~f~~~~~~~~v~~G-----~~~~l~C~~~g~P~p~v~W~k~g~~i----------~~~~~~~~~~~~L~i~~v-~~~D~   65 (89)
T d1cs6a4           2 PDWLDVITDTEADIG-----SDLRWSCVASGKPRPAVRWLRDGQPL----------ASQNRIEVSGGELRFSKL-VLEDS   65 (89)
T ss_dssp             EEEEECCCCEEEETT-----CCEEEECEEEEESCCEEEEEETTEEC----------CCCSSEEEETTEEEESSC-CGGGC
T ss_pred             CCeEEECCCEEECCC-----CcEEEEEEEEEEcCCEEEEEEeeccc----------cccceeeeeeeeEEEEee-cccCC
Confidence            789999999999888     66999999999999999999999876          344577778899999885 89999


Q ss_pred             eeEEEEeecCceeeEeeeeEEeee
Q psy14896        270 GSYHCKASNKFGSIISESVQLAFG  293 (813)
Q Consensus       270 G~Y~C~a~n~~g~~~s~~~~l~v~  293 (813)
                      |.|+|.|.|..|.+ +.++.|.|.
T Consensus        66 G~Y~C~a~N~~G~~-~~~~~l~V~   88 (89)
T d1cs6a4          66 GMYQCVAENKHGTV-YASAELTVQ   88 (89)
T ss_dssp             EEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             EEEEEEEEeCCCEE-EEEEEEEEE
Confidence            99999999999987 556788764

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.66  E-value=5.2e-17  Score=132.36  Aligned_cols=82  Identities=21%  Similarity=0.288  Sum_probs=72.0

Q ss_pred             CCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceee-----ecceEEEECCCCCCCCEEEEEEEEcCCCceEEE
Q psy14896        679 TFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE-----NFNRILTIPNVKVEDQGEYICRASNDRSALESS  753 (813)
Q Consensus       679 ~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~  753 (813)
                      +.+..+.+|+.++|.|.+.|.|.|.|+|+|||.+|..+.+..     ....+|+|.++..+|+|.|+|.|.|..|.++++
T Consensus        11 ~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~   90 (98)
T d1g1ca_          11 IQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSH   90 (98)
T ss_dssp             CCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEECCcEEEEE
Confidence            344678999999999999999999999999999998765421     234589999999999999999999999999999


Q ss_pred             EEEEEEc
Q psy14896        754 VTISIQA  760 (813)
Q Consensus       754 ~~l~V~~  760 (813)
                      +.|.|+.
T Consensus        91 ~~L~V~~   97 (98)
T d1g1ca_          91 AFLLVQA   97 (98)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEE
Confidence            9999985

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.65  E-value=4.6e-17  Score=132.38  Aligned_cols=83  Identities=23%  Similarity=0.397  Sum_probs=73.1

Q ss_pred             CCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCcee----eecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEE
Q psy14896        680 FPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVT  755 (813)
Q Consensus       680 ~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~----~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~  755 (813)
                      .+..+.+|+++.|.|.+.|.|.|.|+|+|||..|..+.++    ......|.|.++..+|+|.|+|+|.|..|.++.++.
T Consensus         9 ~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   88 (97)
T d1koaa1           9 YGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVF   88 (97)
T ss_dssp             CCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETTEEEEEEEC
T ss_pred             CCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECCCEEEEEEE
Confidence            3467889999999999999999999999999999876644    233457999999999999999999999999999999


Q ss_pred             EEEEcCC
Q psy14896        756 ISIQAEP  762 (813)
Q Consensus       756 l~V~~~P  762 (813)
                      |.|...|
T Consensus        89 l~V~~~~   95 (97)
T d1koaa1          89 LNVTRHS   95 (97)
T ss_dssp             CEEECSC
T ss_pred             EEEeecC
Confidence            9998654

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.65  E-value=8.2e-17  Score=129.68  Aligned_cols=82  Identities=23%  Similarity=0.276  Sum_probs=72.2

Q ss_pred             CCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCcee----eecceEEEECCCCCCCCEEEEEEEEcCCCceEEE
Q psy14896        678 KTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYICRASNDRSALESS  753 (813)
Q Consensus       678 ~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~----~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~  753 (813)
                      ++.+..+.+|++++|.|.+.|.|.|.++|+|||..+..+.++    .....+|.|.+++.+|+|.|+|.|.|..|+++++
T Consensus         8 ~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~   87 (93)
T d1wiua_           8 ASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAI   87 (93)
T ss_dssp             CCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEECCCEEEEE
Confidence            344577899999999999999999999999999998776543    2335689999999999999999999999999999


Q ss_pred             EEEEEE
Q psy14896        754 VTISIQ  759 (813)
Q Consensus       754 ~~l~V~  759 (813)
                      +.|.|+
T Consensus        88 ~~l~V~   93 (93)
T d1wiua_          88 FEVIVQ   93 (93)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            999985

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.64  E-value=1.2e-16  Score=128.07  Aligned_cols=80  Identities=28%  Similarity=0.523  Sum_probs=71.5

Q ss_pred             CCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCcee----eecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEE
Q psy14896        680 FPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVT  755 (813)
Q Consensus       680 ~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~----~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~  755 (813)
                      .++.+.+|+++.|.|.+.|.|.|.|+|+|||.+|..+.++    ....++|.|.+++.+|+|.|+|.|.|..|+.+.++.
T Consensus         7 ~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~   86 (91)
T d1tnna_           7 RSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFT   86 (91)
T ss_dssp             CCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBCCEEEE
T ss_pred             cCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEEEEEEE
Confidence            3467899999999999999999999999999999876543    334678999999999999999999999999999999


Q ss_pred             EEEE
Q psy14896        756 ISIQ  759 (813)
Q Consensus       756 l~V~  759 (813)
                      |.|+
T Consensus        87 l~V~   90 (91)
T d1tnna_          87 LTIQ   90 (91)
T ss_dssp             EECC
T ss_pred             EEEE
Confidence            9986

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.64  E-value=2.1e-16  Score=128.36  Aligned_cols=94  Identities=32%  Similarity=0.620  Sum_probs=78.7

Q ss_pred             CCCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCcccc
Q psy14896        188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE  267 (813)
Q Consensus       188 ~~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~  267 (813)
                      .+|.|+.+|.+..+.+|.  +|++++|.|.+.|.|.|.++|+|||..+.        .....++...++.++++..++.+
T Consensus         3 ~~P~f~~~P~~~~~~~g~--~~~~v~l~C~~~g~P~p~v~W~~ng~~i~--------~~~~~~~~~~~~~~l~i~~~~~~   72 (97)
T d1cs6a1           3 YGPVFEEQPAHTLFPEGS--AEEKVTLTCRARANPPATYRWKMNGTELK--------MGPDSRYRLVAGDLVISNPVKAK   72 (97)
T ss_dssp             EEEEEEECCCCEEEETTC--SCCEEEECCEEEEESCCEEEEEETTEECC--------CSTTSSEEEETTEEEEESCCHHH
T ss_pred             cCCEEEEeCCCEEEECcc--CCCeEEEEEEEEEeCCCEEEEEEeeeecc--------CCCCceEEeeeeeEEEEeccccc
Confidence            368999999999988873  46889999999999999999999998663        34455566667777777766899


Q ss_pred             CCeeEEEEeecCceeeEeeeeEEe
Q psy14896        268 DRGSYHCKASNKFGSIISESVQLA  291 (813)
Q Consensus       268 d~G~Y~C~a~n~~g~~~s~~~~l~  291 (813)
                      |+|.|+|.|+|..|.+.|.+++|+
T Consensus        73 d~G~Y~C~a~N~~G~~~S~~a~L~   96 (97)
T d1cs6a1          73 DAGSYQCVATNARGTVVSREASLR   96 (97)
T ss_dssp             HCEEEEEEEEETTEEEECCCEEEE
T ss_pred             CCEEEEEEEEECCCEEEEEEEEEe
Confidence            999999999999999878888875

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.63  E-value=2.1e-16  Score=125.65  Aligned_cols=77  Identities=27%  Similarity=0.471  Sum_probs=68.8

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ  759 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  759 (813)
                      ..+.+|+++.|.|.+.|.|+|.|+|+|||.+|..+. +...+..|+|.+++.+|+|.|+|+|.|.+|..+..+.|.|.
T Consensus        13 ~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~   89 (89)
T d1biha4          13 IVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGR-ATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQVN   89 (89)
T ss_dssp             EEECTTSCEEEECEEEEESCCCCEEEETTEECCSSS-EEEETTEEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCcccc-EEEeeeeEEECCCChhhCEEEEEEEEECCCEEEEEEEEEEC
Confidence            467899999999999999999999999999997654 33445679999999999999999999999999999999884

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=4.2e-16  Score=127.67  Aligned_cols=81  Identities=20%  Similarity=0.372  Sum_probs=71.0

Q ss_pred             CCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceee---------ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEE
Q psy14896        684 PKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE---------NFNRILTIPNVKVEDQGEYICRASNDRSALESSV  754 (813)
Q Consensus       684 ~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~---------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~  754 (813)
                      ...++.+.|.|.+.|+|.|.|+|+|||.+|..+.+..         ...++|.|.+++.+|+|.|+|.|+|.+|++++++
T Consensus        13 ~~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~   92 (103)
T d1wwbx_          13 PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQI   92 (103)
T ss_dssp             CCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             CccceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEEEE
Confidence            3468889999999999999999999999998765321         1235799999999999999999999999999999


Q ss_pred             EEEEEcCCcc
Q psy14896        755 TISIQAEPNF  764 (813)
Q Consensus       755 ~l~V~~~P~~  764 (813)
                      .|.|.++|.+
T Consensus        93 ~v~V~~~P~i  102 (103)
T d1wwbx_          93 SAHFMGWPGI  102 (103)
T ss_dssp             EECCSCCCCC
T ss_pred             EEEEEeCCCC
Confidence            9999999976

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.62  E-value=1.8e-16  Score=130.16  Aligned_cols=81  Identities=25%  Similarity=0.492  Sum_probs=71.6

Q ss_pred             CCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceee-----ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEE
Q psy14896        680 FPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE-----NFNRILTIPNVKVEDQGEYICRASNDRSALESSV  754 (813)
Q Consensus       680 ~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~  754 (813)
                      .+..+.+|+++.|.|.+.|.|.|.|+|+|||.+|..+.++.     ....+|.|.+++.+|+|.|+|+|.|.+|.+++++
T Consensus        16 ~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   95 (102)
T d1fhga_          16 LDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTA   95 (102)
T ss_dssp             CCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             CcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEECCcEEEEEE
Confidence            34678899999999999999999999999999998776442     2245799999999999999999999999999999


Q ss_pred             EEEEEc
Q psy14896        755 TISIQA  760 (813)
Q Consensus       755 ~l~V~~  760 (813)
                      .|.|+.
T Consensus        96 ~L~V~s  101 (102)
T d1fhga_          96 ELLVET  101 (102)
T ss_dssp             EEEEEC
T ss_pred             EEEEEE
Confidence            999973

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=4.2e-16  Score=122.31  Aligned_cols=76  Identities=14%  Similarity=0.214  Sum_probs=68.1

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcC
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAE  761 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~  761 (813)
                      ..+.+|++++|.|.+.|.|+|.|+|++++..+..      ....|+|.+++.+|+|.|+|.|.|..|..+..+.|.|.+.
T Consensus         9 ~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~------~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v~V~~~   82 (84)
T d2nxyb2           9 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ------GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAF   82 (84)
T ss_dssp             SCEETTCCEEEEEECCTTCCCEEEEECTTCCEEE------ESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECEECC
T ss_pred             eEEECCCeEEEEEEeEcCCchheEEEeeccccee------eeeeeeeeecccccccEEEEEEEeCCCEEEEEEEEEEEec
Confidence            4578999999999999999999999998766533      3568999999999999999999999999999999999987


Q ss_pred             Cc
Q psy14896        762 PN  763 (813)
Q Consensus       762 P~  763 (813)
                      |.
T Consensus        83 ~k   84 (84)
T d2nxyb2          83 QK   84 (84)
T ss_dssp             CC
T ss_pred             CC
Confidence            63

>d1byfa_ d.169.1.1 (A:) Lectin TC14 {Tunicate (Polyandrocarpa misakiensis) [TaxId: 7723]}

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Lectin TC14
species: Tunicate (Polyandrocarpa misakiensis) [TaxId: 7723]

Probab=99.62  E-value=6.5e-16  Score=132.50  Aligned_cols=118  Identities=18%  Similarity=0.124  Sum_probs=93.4

Q ss_pred             CeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCC-CeEEcCCCCCCcccc
Q psy14896         38 DSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPN-LWVNEDGTNLNELDA  116 (813)
Q Consensus        38 ~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~-~~~W~dgs~~~~~~~  116 (813)
                      +..|.|+.+ +++|.+|+..|+.+||+||+|.+++|+.|+..+.........+|||+.+...++ .|.|.||+++.....
T Consensus         1 ~y~~~f~~~-~~tw~~A~~~C~~~g~~La~i~~~~~~~~~~~~~~~~~~~~~~WiG~~~~~~~~~~w~~~~~~~~~~~~~   79 (123)
T d1byfa_           1 DYEILFSDE-TMNYADAGTYCQSRGMALVSSAMRDSTMVKAILAFTEVKGHDYWVGADNLQDGAYNFLWNDGVSLPTDSD   79 (123)
T ss_dssp             CEEEEEEEE-EECHHHHHHHHHTTTCEESCGGGGSHHHHHHHHHHHHHHTCCEEEEEESTTTCTTCCEETTSCBCCTTCT
T ss_pred             CeEEEEECc-EeCHHHHHHHHHHCCCCCCccCCHHHHHHHHHHHhccCCCccEEEeeccccccccccccccCCccccccc
Confidence            356888888 599999999999999999999999999998776644334457999999876655 699999998765444


Q ss_pred             ccCC-CCCCc-ccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896        117 AFLP-EPADN-VQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS  160 (813)
Q Consensus       117 ~~~~-~p~~~-~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~  160 (813)
                      +|.. +|++. ..++|+.|....    ..|.+..|.....|+|++.
T Consensus        80 ~~~~~~p~~~~~~~~Cv~l~~~~----~~W~~~~C~~~~~fICe~~  121 (123)
T d1byfa_          80 LWSPNEPSNPQSWQLCVQIWSKY----NLLDDVGCGGARRVICEKE  121 (123)
T ss_dssp             TBCTTCSCSCTTSCCEEEEETTT----TEEEEECSCSCEEEEEEEE
T ss_pred             cccccccccccCcceeEEEecCC----CeEeeeCCCCCEeEEEEEc
Confidence            4544 88764 356899986543    2456999999999999984

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.61  E-value=3.4e-16  Score=125.20  Aligned_cols=77  Identities=34%  Similarity=0.560  Sum_probs=67.5

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEc
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQA  760 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  760 (813)
                      ..+.+|++++|.|.+.|.|.|.|+|+|++..+...  ....+++|.|.+++.+|+|.|+|+|.|.+|..+.++.|.|+.
T Consensus        15 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~A   91 (91)
T d1cs6a3          15 TYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK--WLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA   91 (91)
T ss_dssp             EEEETTCCEEEECEEEEESCCEEEEEECCSCCSCC--CSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred             EEEecCCcEEEEEEEEEccCCEEEEEecccccceE--eeeeeeEEEeCCCCccCCEEEEEEEEECCCEEEEEEEEEEEC
Confidence            66789999999999999999999999987665432  333467899999999999999999999999999999999863

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.60  E-value=1.4e-15  Score=120.74  Aligned_cols=86  Identities=26%  Similarity=0.522  Sum_probs=71.2

Q ss_pred             CCceeeCCCc-eeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCcccc
Q psy14896        189 GPYFIKQPTD-VVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE  267 (813)
Q Consensus       189 ~P~~~~~p~~-~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~  267 (813)
                      +|.|+..|.+ +.+.+|     +++.|.|.+.|.|.|.|+|+|||.+|           .+.++...++.|.|.+. +.+
T Consensus         2 aP~f~~~p~~~~~v~~G-----~~~~l~C~~~g~P~p~v~W~~~~~~i-----------~~~~~~~~~~~L~i~~v-~~~   64 (89)
T d1biha4           2 APKYEQKPEKVIVVKQG-----QDVTIPCKVTGLPAPNVVWSHNAKPL-----------SGGRATVTDSGLVIKGV-KNG   64 (89)
T ss_dssp             EEEEEECCCSEEEECTT-----SCEEEECEEEEESCCCCEEEETTEEC-----------CSSSEEEETTEEEESSC-CST
T ss_pred             CCeEEECCCCCEEEeCC-----CeEEEEEEEEEeCCCEEEEEeCCccC-----------ccccEEEeeeeEEECCC-Chh
Confidence            5789888765 456666     77999999999999999999999865           23456677788999885 899


Q ss_pred             CCeeEEEEeecCceeeEeeeeEEee
Q psy14896        268 DRGSYHCKASNKFGSIISESVQLAF  292 (813)
Q Consensus       268 d~G~Y~C~a~n~~g~~~s~~~~l~v  292 (813)
                      |+|.|+|.|.|..|.. +..+.|.|
T Consensus        65 d~G~Y~C~a~N~~G~~-~~~~~l~V   88 (89)
T d1biha4          65 DKGYYGCRATNEHGDK-YFETLVQV   88 (89)
T ss_dssp             TCEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             hCEEEEEEEEECCCEE-EEEEEEEE
Confidence            9999999999999987 66677765

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=9.6e-16  Score=126.44  Aligned_cols=79  Identities=20%  Similarity=0.267  Sum_probs=67.9

Q ss_pred             CCCeEEEEEEecCCCCCeEEEEeCCcccCCCceee--------ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEE
Q psy14896        686 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE--------NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS  757 (813)
Q Consensus       686 ~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~--------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~  757 (813)
                      .+....|.|.+.|.|+|.|+|+|||++|..+.+..        ...+.|+|.+++.+|+|.|+|+|+|.+|++++++.|.
T Consensus        16 ~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~   95 (105)
T d1wwca_          16 LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGH   95 (105)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEEC
T ss_pred             EEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEEEEEEEEE
Confidence            45667899999999999999999999997765321        1235799999999999999999999999999999999


Q ss_pred             EEcCCcc
Q psy14896        758 IQAEPNF  764 (813)
Q Consensus       758 V~~~P~~  764 (813)
                      |..+|..
T Consensus        96 V~~~P~P  102 (105)
T d1wwca_          96 FLKEPFP  102 (105)
T ss_dssp             CSCCCCC
T ss_pred             EEeCCCC
Confidence            9988854

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.60  E-value=5.9e-16  Score=125.52  Aligned_cols=78  Identities=23%  Similarity=0.514  Sum_probs=68.9

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCcee-----eecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI  756 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~-----~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l  756 (813)
                      ..+..|+++.|.|.+.|.|.|.|+|+|||.+|..+.+.     .....+|.|.+++.+|+|.|+|.|.|.+|.++.++.|
T Consensus        15 ~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   94 (97)
T d3dara1          15 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL   94 (97)
T ss_dssp             EEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEEE
Confidence            45789999999999999999999999999999765432     2345789999999999999999999999999999999


Q ss_pred             EEE
Q psy14896        757 SIQ  759 (813)
Q Consensus       757 ~V~  759 (813)
                      .|.
T Consensus        95 ~Vl   97 (97)
T d3dara1          95 DVV   97 (97)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            883

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=1e-15  Score=125.12  Aligned_cols=80  Identities=33%  Similarity=0.635  Sum_probs=69.4

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCce------eeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAY------FENFNRILTIPNVKVEDQGEYICRASNDRSALESSVT  755 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~------~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~  755 (813)
                      ..+..|++++|.|.+.|.|.|.|+|+|||.+|.....      .....++|.|.+++.+|+|.|+|.|.|..|+++..+.
T Consensus        15 ~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~   94 (100)
T d1qz1a3          15 ATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIH   94 (100)
T ss_dssp             EETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             EEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEEEECCCEEEEEEE
Confidence            4578899999999999999999999999998865432      2334578999999999999999999999999999999


Q ss_pred             EEEEcC
Q psy14896        756 ISIQAE  761 (813)
Q Consensus       756 l~V~~~  761 (813)
                      |.|..+
T Consensus        95 l~V~~K  100 (100)
T d1qz1a3          95 LKVFAK  100 (100)
T ss_dssp             EEEECC
T ss_pred             EEEEEC
Confidence            999753

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.59  E-value=2.4e-15  Score=121.98  Aligned_cols=93  Identities=24%  Similarity=0.335  Sum_probs=71.6

Q ss_pred             CceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCC
Q psy14896        190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR  269 (813)
Q Consensus       190 P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~  269 (813)
                      |.|+..|.+..+.+|     +++.|.|.+.|.|.|.|+|||||..|.......+....      ...+|.|.+. +.+|+
T Consensus         2 P~f~~~p~~~~v~~G-----~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~------~~~~L~I~~~-~~~D~   69 (97)
T d1koaa1           2 PRFIVKPYGTEVGEG-----QSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNG------NDYGLTINRV-KGDDK   69 (97)
T ss_dssp             CEEEECCCCCEEETT-----SCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCST------TEEEEEESCC-CSGGG
T ss_pred             CEEEEeCCCEEEeCC-----CcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEecC------CeeEEEeCCC-ceecC
Confidence            889999999998887     66999999999999999999999887432211111100      1124777775 89999


Q ss_pred             eeEEEEeecCceeeEeeeeEEeeeee
Q psy14896        270 GSYHCKASNKFGSIISESVQLAFGFI  295 (813)
Q Consensus       270 G~Y~C~a~n~~g~~~s~~~~l~v~~~  295 (813)
                      |.|+|.|+|..|.. +..+.|.|...
T Consensus        70 G~Y~C~a~N~~G~~-~~~~~l~V~~~   94 (97)
T d1koaa1          70 GEYTVRAKNSYGTK-EEIVFLNVTRH   94 (97)
T ss_dssp             SCEEEEEEETTEEE-EEEECCEEECS
T ss_pred             EEEEEEEEECCCEE-EEEEEEEEeec
Confidence            99999999999987 66788887543

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.3e-15  Score=117.77  Aligned_cols=82  Identities=23%  Similarity=0.434  Sum_probs=66.1

Q ss_pred             CceeeCCCceeecCCCccccccEEEEeeeccCCCC-eEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccC
Q psy14896        190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED  268 (813)
Q Consensus       190 P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p-~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d  268 (813)
                      |.|+.+|.+..+.+|     +++.|.|.+.|.|.| +|+|||||..+...        .       .+.+.|... ..+|
T Consensus         2 P~f~~~P~~~~v~~G-----~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~--------~-------~~~~~l~~~-~~~d   60 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPN-----APFQLSCEAVGPPEPVTIVWWRGTTKIGGP--------A-------PSPSVLNVT-GVTQ   60 (85)
T ss_dssp             CEEEECCCCEEECTT-----CCEEEEEEEECSSSCCEEEEEETTEECSCS--------E-------ESSEEEEEC-CCSS
T ss_pred             CcEEEeCCcEEEcCC-----CEEEEEEEEecCCcceEEEEEECCEECCCC--------C-------CcceEEecC-Cccc
Confidence            789999999999887     669999999999998 89999999876321        0       122333332 5789


Q ss_pred             CeeEEEEeecCceeeEeeeeEEee
Q psy14896        269 RGSYHCKASNKFGSIISESVQLAF  292 (813)
Q Consensus       269 ~G~Y~C~a~n~~g~~~s~~~~l~v  292 (813)
                      +|.|+|.|+|..|...|..++|.|
T Consensus        61 ~G~Y~C~A~N~~G~~~S~~~~v~V   84 (85)
T d1rhfa2          61 STMFSCEAHNLKGLASSRTATVHL   84 (85)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEEE
T ss_pred             cEEEEEEEEcCCCcEEEEEEEEEE
Confidence            999999999999988788888876

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.9e-16  Score=123.12  Aligned_cols=71  Identities=20%  Similarity=0.324  Sum_probs=63.0

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcC
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAE  761 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~  761 (813)
                      ..+.+|+.+.|.|.+.|.|.|.|+|+|||..+...         +.+.+++.+|+|.|+|+|.|.+|+.+..+.|.|..|
T Consensus        14 ~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~---------~~~~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~P   84 (84)
T d2oz4a3          14 WTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI---------GESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP   84 (84)
T ss_dssp             EEEETTCEECCCCCCEEESCCEEEEEETTTEECCT---------TSCEECCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             EEEeCCCEEEEEEEEeEcCccEEEEEEeeccceee---------eeeeccccCCCCEEEEEEEcCCCEEEEEEEEEEECC
Confidence            56789999999999999999999999999877543         234567899999999999999999999999999865

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.7e-15  Score=118.82  Aligned_cols=78  Identities=23%  Similarity=0.428  Sum_probs=68.2

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCce-eeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAY-FENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ  759 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  759 (813)
                      ..+.+|+++.|.|.+.|.|+|.++|++++..+..+.. .....++|.|.+++.+|+|.|+|+|.|..|..+.++.|.|.
T Consensus        11 ~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v~V~   89 (90)
T d1vcaa2          11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIY   89 (90)
T ss_dssp             EEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEECCCEEEEEEeccCCCCceEEEEecCccceeeeeeeecCCcEEEEecccccccceEEEEEEeCCCEEEEEEEEEEE
Confidence            3457899999999999999999999998877665443 34456789999999999999999999999999999999985

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1e-14  Score=119.14  Aligned_cols=91  Identities=22%  Similarity=0.270  Sum_probs=72.9

Q ss_pred             CceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe--e-C-CeEEEcCCcc
Q psy14896        190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL--S-G-GNLIINDPRQ  265 (813)
Q Consensus       190 P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~--~-~-~~l~i~~~~~  265 (813)
                      |.|...|.+..+.+|     +++.|.|.+.|.|.|.|.|+|||.+|..          +.++.+  . + .+|.|.+. +
T Consensus         1 P~~~~~p~~~~v~~G-----~~~~l~C~v~g~p~p~v~W~k~~~~l~~----------~~~~~~~~~~~~~~L~I~~~-~   64 (101)
T d2cqva1           1 PQIIQFPEDQKVRAG-----ESVELFGKVTGTQPITCTWMKFRKQIQE----------SEHMKVENSENGSKLTILAA-R   64 (101)
T ss_dssp             CEESCCCCSEEEETT-----CCEEEEEEEESSSSCEEEEEESSSBCCC----------SSSEEEEECSSEEEEEETTC-C
T ss_pred             CeEEeeCCcEEEeCC-----CcEEEEEEEEecCCCEEEEEeCceeecc----------CCcEEEEEecceeEEEEeeC-C
Confidence            678888899998887     6799999999999999999999987732          223332  2 2 24777775 8


Q ss_pred             ccCCeeEEEEeecCceeeEeeeeEEeeeeecc
Q psy14896        266 VEDRGSYHCKASNKFGSIISESVQLAFGFIGE  297 (813)
Q Consensus       266 ~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~  297 (813)
                      .+|+|.|+|.|+|..|.. +.++.|.|...|.
T Consensus        65 ~~D~G~Y~C~a~N~~G~~-~~~~~l~V~~~P~   95 (101)
T d2cqva1          65 QEHCGCYTLLVENKLGSR-QAQVNLTVVDKPD   95 (101)
T ss_dssp             TTTCEEEEEEEECSSCEE-ECCEEEEEECSCS
T ss_pred             cccCEEEEEEEEECCCEE-EEEEEEEEEecCC
Confidence            999999999999999987 7788888876554

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.6e-15  Score=120.33  Aligned_cols=79  Identities=19%  Similarity=0.445  Sum_probs=67.9

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceee------ecceEEEECCCCCCCCEEEEEEEEcCCCce-EEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE------NFNRILTIPNVKVEDQGEYICRASNDRSAL-ESSV  754 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~  754 (813)
                      +.+.+|++++|.|.+.|.|.|.|+|+|||..|.......      .....|+|.+++.+|+|.|+|.|.|..|.. +..+
T Consensus         6 ~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S~~~   85 (91)
T d1rhfa1           6 LTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPV   85 (91)
T ss_dssp             EEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCCE
T ss_pred             EEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEEEEEE
Confidence            567899999999999999999999999999997765421      223579999999999999999999999985 5689


Q ss_pred             EEEEEc
Q psy14896        755 TISIQA  760 (813)
Q Consensus       755 ~l~V~~  760 (813)
                      .|.|++
T Consensus        86 ~l~V~G   91 (91)
T d1rhfa1          86 WLTVEG   91 (91)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            998864

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=6.7e-15  Score=117.36  Aligned_cols=77  Identities=31%  Similarity=0.492  Sum_probs=68.3

Q ss_pred             cCCCCCCeEEEEEEec-CCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAF-GYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ  759 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~-g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  759 (813)
                      ..+.+|+++.|.|.+. |.|.|.|+|+|+|..+..+... ..+++|+|.+++.+|+|.|+|.|+|..|.++.+++|.|+
T Consensus        12 ~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~   89 (89)
T d1gl4b_          12 QSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAM-DFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ   89 (89)
T ss_dssp             EEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEE-EETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             EEEeCCCcEEEEEEccCCCCCCEEEEecCCceeeccccE-eeceEEEEecCCcccCEEEEEEEEECCCEEEEEEEEEEC
Confidence            5688999999999997 7888999999999988766543 346789999999999999999999999999999999985

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.55  E-value=7.3e-15  Score=120.39  Aligned_cols=89  Identities=28%  Similarity=0.558  Sum_probs=72.1

Q ss_pred             CCCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe--e---CCeEEEcC
Q psy14896        188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL--S---GGNLIIND  262 (813)
Q Consensus       188 ~~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~--~---~~~l~i~~  262 (813)
                      .+|.|+..|.+..+.+|     +++.|.|.+.|.|.|.|.|||||.+|..          +.++.+  .   ..+|.|.+
T Consensus         7 ~~P~f~~~~~~~~v~~G-----~~~~l~C~~~g~P~p~v~W~k~~~~i~~----------~~~~~~~~~~~~~~~L~I~~   71 (102)
T d1fhga_           7 VKPYFTKTILDMEVVEG-----SAARFDCKVEGYPDPEVMWFKDDNPVKE----------SRHFQIDYDEEGNCSLTISE   71 (102)
T ss_dssp             EEEEEEECCCCEEEETT-----SCEEEEEEEEEESCCEEEEEETTEECCC----------SSSEEEEECTTCEEEEEESS
T ss_pred             CCCeEEcCCCcEEEecC-----CcEEEEEEEEeccCCeEEEEeeeccccc----------eeeEeEEEecCceeeeEecC
Confidence            36899999999998887     6699999999999999999999987732          223332  2   23577777


Q ss_pred             CccccCCeeEEEEeecCceeeEeeeeEEeee
Q psy14896        263 PRQVEDRGSYHCKASNKFGSIISESVQLAFG  293 (813)
Q Consensus       263 ~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~  293 (813)
                      . +.+|+|.|+|.|+|..|.. +.++.|.|.
T Consensus        72 ~-~~~D~G~Y~C~a~N~~G~~-~~~~~L~V~  100 (102)
T d1fhga_          72 V-CGDDDAKYTCKAVNSLGEA-TCTAELLVE  100 (102)
T ss_dssp             C-CGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             C-CHHhCEEEEEEEEECCcEE-EEEEEEEEE
Confidence            5 8999999999999999987 667888774

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.9e-15  Score=118.24  Aligned_cols=75  Identities=21%  Similarity=0.298  Sum_probs=61.4

Q ss_pred             CCcCCCCCCeEEEEEEecCCCCC-eEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCce-EEEEEEE
Q psy14896        680 FPEAPKAGDKVRLECVAFGYPVP-SYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSAL-ESSVTIS  757 (813)
Q Consensus       680 ~~~~~~~G~~v~l~C~~~g~P~p-~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~  757 (813)
                      .+..+.+|+++.|.|.+.|.|.| +|+|+|||.+|....     .+.++|.....+|+|.|+|+|.|.+|.. +..+.|.
T Consensus         9 ~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~-----~~~~~l~~~~~~d~G~Y~C~A~N~~G~~~S~~~~v~   83 (85)
T d1rhfa2           9 KDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA-----PSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATVH   83 (85)
T ss_dssp             CCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSE-----ESSEEEEECCCSSCEEEEEEEEETTEEEECCCEEEE
T ss_pred             CcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCC-----CcceEEecCCccccEEEEEEEEcCCCcEEEEEEEEE
Confidence            34678899999999999999998 999999999987653     2345566666789999999999999965 4578887


Q ss_pred             EE
Q psy14896        758 IQ  759 (813)
Q Consensus       758 V~  759 (813)
                      |+
T Consensus        84 Vk   85 (85)
T d1rhfa2          84 LQ   85 (85)
T ss_dssp             EC
T ss_pred             EC
Confidence            74

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.55  E-value=9e-15  Score=118.80  Aligned_cols=89  Identities=26%  Similarity=0.367  Sum_probs=71.5

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEE--eeCC--eEEEcCCc
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFT--LSGG--NLIINDPR  264 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~--~~~~--~l~i~~~~  264 (813)
                      +|.|+..+.+..+.+|     ++++|.|.+.|.|.|.|+|||||.+|..         .+..+.  ..++  +|.|.+. 
T Consensus         4 aP~f~~~~~~~~v~~g-----~~v~l~c~v~g~P~p~v~W~k~~~~i~~---------~~~~~~~~~~~~~~~L~I~~~-   68 (98)
T d1g1ca_           4 APKIFERIQSQTVGQG-----SDAHFRVRVVGKPDPECEWYKNGVKIER---------SDRIYWYWPEDNVCELVIRDV-   68 (98)
T ss_dssp             EEEEEECCCCEEEETT-----SCEEEEEEEEEESCCEEEEEETTEECCC---------CSSEEEEEEETTEEEEEECSC-
T ss_pred             CCeEecCCCcEEEcCC-----CcEEEEEEEEEecCCeEEEEeCceEEee---------eeeeEEEeccceEEEEEeccC-
Confidence            6899999999998887     6699999999999999999999987732         222222  2233  5777775 


Q ss_pred             cccCCeeEEEEeecCceeeEeeeeEEeee
Q psy14896        265 QVEDRGSYHCKASNKFGSIISESVQLAFG  293 (813)
Q Consensus       265 ~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~  293 (813)
                      +.+|+|.|+|.|+|..|.. +..+.|.|.
T Consensus        69 ~~~D~G~Y~c~a~N~~G~~-~~~~~L~V~   96 (98)
T d1g1ca_          69 TGEDSASIMVKAINIAGET-SSHAFLLVQ   96 (98)
T ss_dssp             CGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             ccccCEEEEEEEEECCcEE-EEEEEEEEE
Confidence            8999999999999999987 667888775

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.55  E-value=1.1e-14  Score=117.32  Aligned_cols=91  Identities=25%  Similarity=0.443  Sum_probs=71.8

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCC-eEEEeecccccccccccccccCCCccEEeeCCeEEEcCCcccc
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE  267 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p-~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~  267 (813)
                      .|.|+..|.++.+.+|     ++++|.|.+.|.|.| .|.|+|||..|...       .....+...+++|.|.+. +.+
T Consensus         2 ~P~i~~~p~~~~v~~g-----~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~-------~~~~~~~~~~~~L~i~~v-~~~   68 (94)
T d1biha1           2 YPVLKDQPAEVLFREN-----NPTVLECIIEGNDQGVKYSWKKDGKSYNWQ-------EHNAALRKDEGSLVFLRP-QAS   68 (94)
T ss_dssp             CCEECCCCSEEEEETT-----SCEEECCCEESCCSSCEEEEEESSSBCCTT-------TTTEEECTTSCCEEESSC-CGG
T ss_pred             CCEEEecCCcEEEeCC-----CeEEEEEEecCCCCeeEEEEEeeeeeeeee-------cceeeecccceEEEEecc-Chh
Confidence            5889999999999887     669999999999876 79999999876321       111122233678988885 899


Q ss_pred             CCeeEEEEeecCceeeEeeeeEEee
Q psy14896        268 DRGSYHCKASNKFGSIISESVQLAF  292 (813)
Q Consensus       268 d~G~Y~C~a~n~~g~~~s~~~~l~v  292 (813)
                      |+|.|+|.|.|..|.+.+..+.|+.
T Consensus        69 D~G~Y~C~a~N~~G~~~s~~v~l~~   93 (94)
T d1biha1          69 DEGHYQCFAETPAGVASSRVISFRK   93 (94)
T ss_dssp             GCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             cCeEEEEEEEeCCCEEEEEEEEEEE
Confidence            9999999999999988777777653

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=8.5e-15  Score=115.89  Aligned_cols=77  Identities=18%  Similarity=0.271  Sum_probs=67.2

Q ss_pred             cCCCCCCeEEEEEEec-CCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAF-GYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ  759 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~-g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  759 (813)
                      ..+.+|+++.|.|.+. |.|.|.|+|++++.++.. .+.....++|+|.+++.+|+|.|+|+|+|..|+.+.+++|.|.
T Consensus        13 ~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~~~s~~l~Vy   90 (90)
T d1gsma1          13 VAVALGASRQLTCRLACADRGASVQWRGLDTSLGA-VQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVY   90 (90)
T ss_dssp             EEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCC-EEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeee-eeccCceeeEEcCccChhhCCcEEEEEEeCCCcEEEEEEEEEC
Confidence            4578999999999986 899999999999988743 3344456889999999999999999999999999999999884

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.54  E-value=8.1e-15  Score=117.76  Aligned_cols=89  Identities=15%  Similarity=0.227  Sum_probs=69.6

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEee--CCeEEEcCCccc
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS--GGNLIINDPRQV  266 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~  266 (813)
                      +|.|...+.++.+.+|     +++.|.|.+.|.|.|.+.|+|||..+...        ........  ..+|.|.+ ++.
T Consensus         2 ~P~i~~~~~~~~v~~G-----~~~~l~c~~~g~P~p~v~W~~~~~~i~~~--------~~~~~~~~~~~~~L~I~~-~~~   67 (93)
T d1wiua_           2 KPKILTASRKIKIKAG-----FTHNLEVDFIGAPDPTATWTVGDSGAALA--------PELLVDAKSSTTSIFFPS-AKR   67 (93)
T ss_dssp             CCEECCCCCEEEECSS-----BCCEEEEEEECCSSCEEEEECSSSSCBCS--------TTSEEEEETTEEEEECTT-BCG
T ss_pred             CCeEEeCCCcEEEeCC-----CeEEEEEEEEEecCCeEEEEeeeeeceee--------eeeeecccccceeecccc-ccc
Confidence            5888888999998887     67999999999999999999999876321        11122222  23566666 589


Q ss_pred             cCCeeEEEEeecCceeeEeeeeEEee
Q psy14896        267 EDRGSYHCKASNKFGSIISESVQLAF  292 (813)
Q Consensus       267 ~d~G~Y~C~a~n~~g~~~s~~~~l~v  292 (813)
                      +|+|.|+|.|+|..|.. +..+.|.|
T Consensus        68 ~D~G~Y~c~a~N~~G~~-~~~~~l~V   92 (93)
T d1wiua_          68 ADSGNYKLKVKNELGED-EAIFEVIV   92 (93)
T ss_dssp             GGCEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             cccEEEEEEEEECCCEE-EEEEEEEE
Confidence            99999999999999987 66677765

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.53  E-value=1.2e-14  Score=116.08  Aligned_cols=86  Identities=29%  Similarity=0.437  Sum_probs=68.4

Q ss_pred             CCceeeC-CCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCcccc
Q psy14896        189 GPYFIKQ-PTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE  267 (813)
Q Consensus       189 ~P~~~~~-p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~  267 (813)
                      +|.|... |.++.+.+|     ++++|.|.+.|.|.|.|+|+|++..+            ...+...+++|.|.+. +.+
T Consensus         4 ~P~i~~~~p~~~~~~~G-----~~v~l~C~~~g~P~p~i~W~k~~~~~------------~~~~~~~~~~L~I~~v-~~~   65 (91)
T d1cs6a3           4 APSIKAKFPADTYALTG-----QMVTLECFAFGNPVPQIKWRKLDGSQ------------TSKWLSSEPLLHIQNV-DFE   65 (91)
T ss_dssp             EEEEEECCCSEEEEETT-----CCEEEECEEEEESCCEEEEEECCSCC------------SCCCSBSSSEEEECSC-CGG
T ss_pred             CCeEEeeCCCcEEEecC-----CcEEEEEEEEEccCCEEEEEeccccc------------ceEeeeeeeEEEeCCC-Ccc
Confidence            4667665 788888887     66999999999999999999987533            1122334678888885 899


Q ss_pred             CCeeEEEEeecCceeeEeeeeEEeee
Q psy14896        268 DRGSYHCKASNKFGSIISESVQLAFG  293 (813)
Q Consensus       268 d~G~Y~C~a~n~~g~~~s~~~~l~v~  293 (813)
                      |+|.|+|.|+|..|.. +..+.|.|.
T Consensus        66 D~G~Y~C~a~N~~G~~-~~~~~l~V~   90 (91)
T d1cs6a3          66 DEGTYECEAENIKGRD-TYQGRIIIH   90 (91)
T ss_dssp             GCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             CCEEEEEEEEECCCEE-EEEEEEEEE
Confidence            9999999999999987 667777764

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.52  E-value=1.1e-14  Score=117.83  Aligned_cols=78  Identities=22%  Similarity=0.339  Sum_probs=66.4

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCce--e----eecceEEEECCCCCCCCEEEEEEEEcCCCce-EEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAY--F----ENFNRILTIPNVKVEDQGEYICRASNDRSAL-ESSV  754 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~--~----~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~  754 (813)
                      ..+.+|+++.|.|.+.|.|.|.|+|+|+|..+..+..  +    .....+|.|.+++.+|+|.|+|.|.|.+|.. +.++
T Consensus        13 ~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~s~   92 (97)
T d1biha3          13 MMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSL   92 (97)
T ss_dssp             EEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEE
T ss_pred             EEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEEEEE
Confidence            6678999999999999999999999999999865432  1    1234689999999999999999999999986 4578


Q ss_pred             EEEEE
Q psy14896        755 TISIQ  759 (813)
Q Consensus       755 ~l~V~  759 (813)
                      .|+|.
T Consensus        93 ~L~Vl   97 (97)
T d1biha3          93 KLTVV   97 (97)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            89873

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1e-15  Score=122.75  Aligned_cols=78  Identities=23%  Similarity=0.265  Sum_probs=67.9

Q ss_pred             CcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCcee--eecceEEEECCCCCCCCE-EEEEEEEcCCCceEEEEEEE
Q psy14896        681 PEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF--ENFNRILTIPNVKVEDQG-EYICRASNDRSALESSVTIS  757 (813)
Q Consensus       681 ~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~--~~~~~~L~i~~v~~~d~G-~Y~C~a~N~~G~~~~~~~l~  757 (813)
                      ...+.+|+.+.|.|.+.|.|.|.|+|+|++..+......  ......|.|.+++.+|.| .|+|.|.|.+|.++.++.|.
T Consensus        11 ~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G~~~~s~~l~   90 (92)
T d2ifga1          11 NASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVN   90 (92)
T ss_dssp             SSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCC
T ss_pred             CEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeeeeeeeccceeEEEccccccccceEEEEEEEcCCCEEEEEEEEE
Confidence            367899999999999999999999999999888654322  334568999999999999 69999999999999999887


Q ss_pred             E
Q psy14896        758 I  758 (813)
Q Consensus       758 V  758 (813)
                      |
T Consensus        91 V   91 (92)
T d2ifga1          91 V   91 (92)
T ss_dssp             C
T ss_pred             E
Confidence            6

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=8.2e-15  Score=117.18  Aligned_cols=79  Identities=20%  Similarity=0.308  Sum_probs=66.9

Q ss_pred             CcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCce---eeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEE
Q psy14896        681 PEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAY---FENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS  757 (813)
Q Consensus       681 ~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~---~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~  757 (813)
                      +..+.+|+++.|.|.+.|.|.|.|+|+|+|..+.....   ....+++|.|.+++.+|+|.|+|.|.|..|.......|.
T Consensus        10 ~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~i~   89 (92)
T d1epfa2          10 PQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQ   89 (92)
T ss_dssp             SEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEE
T ss_pred             CEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeeeeeEEECCCCHHhCEEEEEEEEECcCCEEEEEEEE
Confidence            36789999999999999999999999999998865542   233456899999999999999999999988777777776


Q ss_pred             EE
Q psy14896        758 IQ  759 (813)
Q Consensus       758 V~  759 (813)
                      |.
T Consensus        90 Vi   91 (92)
T d1epfa2          90 VI   91 (92)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.6e-14  Score=119.07  Aligned_cols=79  Identities=19%  Similarity=0.239  Sum_probs=66.2

Q ss_pred             CCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceee-----------ecceEEEECCCCCCCCEEEEEEEEcCCCceEEE
Q psy14896        685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE-----------NFNRILTIPNVKVEDQGEYICRASNDRSALESS  753 (813)
Q Consensus       685 ~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~-----------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~  753 (813)
                      .++....|.|.+.|.|+|.|+|+|||++|..+....           .....|+|.++..+|+|.|+|.|+|.+|+++++
T Consensus        13 ~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~   92 (107)
T d1he7a_          13 VEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASAS   92 (107)
T ss_dssp             CCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             eEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCCEEEEE
Confidence            444455566799999999999999999997665321           113569999999999999999999999999999


Q ss_pred             EEEEEEcCCc
Q psy14896        754 VTISIQAEPN  763 (813)
Q Consensus       754 ~~l~V~~~P~  763 (813)
                      +.|.|..+|.
T Consensus        93 i~v~v~~~P~  102 (107)
T d1he7a_          93 IMAAFMDNPF  102 (107)
T ss_dssp             EEECCCSCTT
T ss_pred             EEEEEEcCCC
Confidence            9999999994

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=1.6e-14  Score=116.74  Aligned_cols=81  Identities=30%  Similarity=0.432  Sum_probs=69.8

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCcee--eecceEEEECCCCCCCCEEEEEEEEcCCCceE-EEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF--ENFNRILTIPNVKVEDQGEYICRASNDRSALE-SSVTISI  758 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~-~~~~l~V  758 (813)
                      ..+.+|++++|.|.+.+ |++.|+|+|+|..|..+.+.  ....++|+|.+++.+|+|.|+|.|.|..|... ..+.|.|
T Consensus        13 ~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~~L~V   91 (96)
T d1l6za2          13 TTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDI   91 (96)
T ss_dssp             SEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEETTTTEEEECSCCGGGCEEEEEEEESSSCCEECCCCEEEE
T ss_pred             eEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccCCceEEEEeccchhhceEEEEEEEeCCCCeEEEeEEEEE
Confidence            56889999999999876 56899999999999776643  44567899999999999999999999999875 5799999


Q ss_pred             EcCCc
Q psy14896        759 QAEPN  763 (813)
Q Consensus       759 ~~~P~  763 (813)
                      ..+|.
T Consensus        92 ~~~Ps   96 (96)
T d1l6za2          92 IFDPS   96 (96)
T ss_dssp             CCSCC
T ss_pred             EcCCC
Confidence            98883

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.1e-14  Score=120.34  Aligned_cols=87  Identities=14%  Similarity=0.172  Sum_probs=69.7

Q ss_pred             CCCCcCCCCCCeEEEEEEecCCC---CCeEEEEeCCcccC---CCce------e----eecceEEEECCCCCCCCEEEEE
Q psy14896        678 KTFPEAPKAGDKVRLECVAFGYP---VPSYNWTRRGSPLP---RNAY------F----ENFNRILTIPNVKVEDQGEYIC  741 (813)
Q Consensus       678 ~~~~~~~~~G~~v~l~C~~~g~P---~p~i~W~k~g~~l~---~~~~------~----~~~~~~L~i~~v~~~d~G~Y~C  741 (813)
                      .+.+..+.+|++++|.|.+.|.|   .|.|.|+|++....   ...+      +    ......|.|.+++.+|+|.|+|
T Consensus         6 ~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   85 (113)
T d2dava1           6 KPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRC   85 (113)
T ss_dssp             CCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEE
T ss_pred             CCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEEE
Confidence            34457889999999999999999   58999999875431   1111      1    1123569999999999999999


Q ss_pred             EEEcCCCceEEEEEEEEEcCCcc
Q psy14896        742 RASNDRSALESSVTISIQAEPNF  764 (813)
Q Consensus       742 ~a~N~~G~~~~~~~l~V~~~P~~  764 (813)
                      .|.|..|..++++.|.|..+|..
T Consensus        86 ~a~N~~G~~~~~~~L~V~~~~~~  108 (113)
T d2dava1          86 EVTYKDKFDSCSFDLEVHESTGT  108 (113)
T ss_dssp             EEECSSCEEEECCEEEEECCCCS
T ss_pred             EEEeCCCEEEEEEEEEEEcCCCc
Confidence            99999999999999999977653

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=4.7e-14  Score=112.67  Aligned_cols=80  Identities=24%  Similarity=0.307  Sum_probs=65.2

Q ss_pred             CceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEE-eeCCeEEEcCCccccC
Q psy14896        190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFT-LSGGNLIINDPRQVED  268 (813)
Q Consensus       190 P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~~d  268 (813)
                      +.|...|.+..+.+|     +++.|.|.+.|.|.|.|+|||+|+.+..        ....++. ..+++|.|.+. +.+|
T Consensus         2 ~~F~~~P~~~~v~~G-----~~~~l~C~v~g~p~p~v~W~~~~~~i~~--------~~~~~~~~~~~~~L~I~~~-~~~D   67 (92)
T d1epfa2           2 LMFKNAPTPQEFKEG-----EDAVIVCDVVSSLPPTIIWKHKGRDVIL--------KKDVRFIVLSNNYLQIRGI-KKTD   67 (92)
T ss_dssp             SEEEECCSSEECCTT-----SCEEECCEEECSSCCEEEEEETTEEGGG--------GCCTTEEECTTSCEEETTC-CGGG
T ss_pred             cEEEEcCCCEEEeCC-----CcEEEEEEEeecCCCeEEEEEcCccccc--------ccceeeeeeeeeeEEECCC-CHHh
Confidence            678899999998887     6699999999999999999999987632        2333333 44678999885 8999


Q ss_pred             CeeEEEEeecCceee
Q psy14896        269 RGSYHCKASNKFGSI  283 (813)
Q Consensus       269 ~G~Y~C~a~n~~g~~  283 (813)
                      +|.|+|.|.|..|..
T Consensus        68 ~G~Y~C~a~n~~~~~   82 (92)
T d1epfa2          68 EGTYRCEGRILARGE   82 (92)
T ss_dssp             CEEEEEEEEEGGGTE
T ss_pred             CEEEEEEEEECcCCE
Confidence            999999999976644

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.50  E-value=1.5e-14  Score=115.55  Aligned_cols=87  Identities=20%  Similarity=0.383  Sum_probs=66.9

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEee--CCeEEEcCCccccCC
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS--GGNLIINDPRQVEDR  269 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~~d~  269 (813)
                      |+..|.++.+.+|     +++.|.|.+.|.|.|.|.|+|||..|...        ...++...  .++|.|.+. +.+|+
T Consensus         2 ii~~P~~~~v~~G-----~~~~l~C~~~g~P~p~v~W~~~g~~l~~~--------~~~~~~~~~~~~~L~i~~v-~~~D~   67 (91)
T d1tnna_           2 ILTKPRSMTVYEG-----ESARFSCDTDGEPVPTVTWLRKGQVLSTS--------ARHQVTTTKYKSTFEISSV-QASDE   67 (91)
T ss_dssp             CSBCCCCEECSSS-----SCCCEEEECCCSSCCCCEEESSSSTTCSS--------SSCEEEECSSEEEEECSSC-CSCCC
T ss_pred             EEeCCcCEEEeCC-----CcEEEEEEEEEEeCCeEEEEEeecccccc--------cceeeeeecceeEEeecCC-CHHHC
Confidence            5667888888777     66999999999999999999999877421        11122222  345777775 89999


Q ss_pred             eeEEEEeecCceeeEeeeeEEeee
Q psy14896        270 GSYHCKASNKFGSIISESVQLAFG  293 (813)
Q Consensus       270 G~Y~C~a~n~~g~~~s~~~~l~v~  293 (813)
                      |.|+|.|.|..|.. +..+.|.|.
T Consensus        68 G~Y~C~a~N~~G~~-~~~~~l~V~   90 (91)
T d1tnna_          68 GNYSVVVENSEGKQ-EAEFTLTIQ   90 (91)
T ss_dssp             EEEEEECBCSSCBC-CEEEEEECC
T ss_pred             EEEEEEEEECCCEE-EEEEEEEEE
Confidence            99999999999987 566777763

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.7e-14  Score=123.69  Aligned_cols=81  Identities=21%  Similarity=0.295  Sum_probs=67.9

Q ss_pred             CCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCce---------------------------------eeecceEE
Q psy14896        680 FPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAY---------------------------------FENFNRIL  726 (813)
Q Consensus       680 ~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~---------------------------------~~~~~~~L  726 (813)
                      ..+.+.+|++++|.|.+.|.|.|.|+|+|++..+.....                                 ......+|
T Consensus        17 ~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L   96 (130)
T d1gxea_          17 DTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIF   96 (130)
T ss_dssp             CEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTEEEE
T ss_pred             CCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECCCEEEE
Confidence            346789999999999999999999999999876643211                                 01223579


Q ss_pred             EECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEc
Q psy14896        727 TIPNVKVEDQGEYICRASNDRSALESSVTISIQA  760 (813)
Q Consensus       727 ~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  760 (813)
                      +|.++..+|+|.|+|+|.|.+|++++++.|.|.+
T Consensus        97 ~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~d  130 (130)
T d1gxea_          97 TVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVID  130 (130)
T ss_dssp             ECSCCCTTTCEEEEEEEECSSCEEEEEEEEEECC
T ss_pred             EECcCChhcCEEEEEEEEECCCEEEEEEEEEEEC
Confidence            9999999999999999999999999999999863

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=3e-14  Score=118.60  Aligned_cols=81  Identities=14%  Similarity=0.189  Sum_probs=66.8

Q ss_pred             CcCCCCCCeEEEEEEecCCC---CCeEEEEeCCcccCCCc---ee----------eecceEEEECCCCCCCCEEEEEEEE
Q psy14896        681 PEAPKAGDKVRLECVAFGYP---VPSYNWTRRGSPLPRNA---YF----------ENFNRILTIPNVKVEDQGEYICRAS  744 (813)
Q Consensus       681 ~~~~~~G~~v~l~C~~~g~P---~p~i~W~k~g~~l~~~~---~~----------~~~~~~L~i~~v~~~d~G~Y~C~a~  744 (813)
                      +..+.+|++++|.|.+.|.|   .|.|+|+|++.......   ++          ......|.|.+++.+|+|.|+|.|+
T Consensus        13 ~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   92 (110)
T d2avga1          13 DGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRCEVS   92 (110)
T ss_dssp             CEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCCEEEEEEEE
T ss_pred             eEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHCcEEEEEEE
Confidence            46789999999999999999   57999999886442221   11          1123579999999999999999999


Q ss_pred             cCCCceEEEEEEEEEcC
Q psy14896        745 NDRSALESSVTISIQAE  761 (813)
Q Consensus       745 N~~G~~~~~~~l~V~~~  761 (813)
                      |..|.+++++.|.|+.+
T Consensus        93 N~~G~~~~~~~L~V~~~  109 (110)
T d2avga1          93 TKDKFDCSNFNLTVHEA  109 (110)
T ss_dssp             ETTEEEEEEEEEEEESC
T ss_pred             ECCCeEEEEEEEEEEec
Confidence            99999999999999864

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=7.2e-14  Score=113.90  Aligned_cols=95  Identities=24%  Similarity=0.396  Sum_probs=68.9

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe--eCCeEEEcCCccc
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL--SGGNLIINDPRQV  266 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~  266 (813)
                      ||.|...+....+...   +|++++|.|.+.|.|.|.|+|+|||..+....      ....+...  ..++|.|.+. +.
T Consensus         3 PP~i~~~~~~~~~t~~---~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~------~~~~~~~~~~~~~~L~I~~v-~~   72 (100)
T d1qz1a3           3 PPTVQARQSIVNATAN---LGQSVTLVCDADGFPEPTMSWTKDGEPIENEE------EDDEKHIFSDDSSELTIRNV-DK   72 (100)
T ss_dssp             EEEEEESCSEEEEETT---SCCCEEEEEEEEEESCCEEEEEETTEECCCC--------CCSSEEECTTSCEEEECSC-CG
T ss_pred             CCEEEeCCCceeEEEc---CCCCEEEEEEEEEecCCEEEEEeCCccccccc------ccceeEEeecCceEEEeCCC-Cc
Confidence            5778776665433221   34789999999999999999999998774221      12223332  2456888775 89


Q ss_pred             cCCeeEEEEeecCceeeEeeeeEEeeee
Q psy14896        267 EDRGSYHCKASNKFGSIISESVQLAFGF  294 (813)
Q Consensus       267 ~d~G~Y~C~a~n~~g~~~s~~~~l~v~~  294 (813)
                      +|+|.|+|.|+|..|.. +..+.|.|..
T Consensus        73 ~D~G~Y~C~a~N~~G~~-~~~~~l~V~~   99 (100)
T d1qz1a3          73 NDEAEYVCIAENKAGEQ-DASIHLKVFA   99 (100)
T ss_dssp             GGCEEEEEEEEETTEEE-EEEEEEEEEC
T ss_pred             ccCEEEEEEEEECCCEE-EEEEEEEEEE
Confidence            99999999999999987 6678887753

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.49  E-value=1.2e-14  Score=117.06  Aligned_cols=79  Identities=16%  Similarity=0.319  Sum_probs=64.3

Q ss_pred             CCCCcCCCCCCeEEEEEEecCCCCC-eEEEEeCCcccCCCc---eeeecceEEEECCCCCCCCEEEEEEEEcCCCceE-E
Q psy14896        678 KTFPEAPKAGDKVRLECVAFGYPVP-SYNWTRRGSPLPRNA---YFENFNRILTIPNVKVEDQGEYICRASNDRSALE-S  752 (813)
Q Consensus       678 ~~~~~~~~~G~~v~l~C~~~g~P~p-~i~W~k~g~~l~~~~---~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~-~  752 (813)
                      .+.+..+.+|+.++|.|.+.|.|.| .|+|+|||..|..+.   ......++|.|.++..+|+|.|+|.|.|..|... .
T Consensus         8 ~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~s~   87 (94)
T d1biha1           8 QPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSR   87 (94)
T ss_dssp             CCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETTEEEECC
T ss_pred             cCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeecccceEEEEeccChhcCeEEEEEEEeCCCEEEEE
Confidence            3444678999999999999999976 799999999986554   2334467899999999999999999999999754 3


Q ss_pred             EEEE
Q psy14896        753 SVTI  756 (813)
Q Consensus       753 ~~~l  756 (813)
                      .+.|
T Consensus        88 ~v~l   91 (94)
T d1biha1          88 VISF   91 (94)
T ss_dssp             CEEE
T ss_pred             EEEE
Confidence            4443

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.47  E-value=4.8e-14  Score=117.50  Aligned_cols=80  Identities=24%  Similarity=0.385  Sum_probs=63.8

Q ss_pred             CCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCC----c--e-----------eeecceEEEECCCCCCCCEEEEEE
Q psy14896        680 FPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRN----A--Y-----------FENFNRILTIPNVKVEDQGEYICR  742 (813)
Q Consensus       680 ~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~----~--~-----------~~~~~~~L~i~~v~~~d~G~Y~C~  742 (813)
                      ....+.+|++++|.|.+.|.|.|.|+|+|++......    .  .           .......|.|.++..+|+|.|+|.
T Consensus        13 ~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   92 (109)
T d2fdbp2          13 ANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCL   92 (109)
T ss_dssp             CCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCGGGCEEEEEE
T ss_pred             CCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCHHHCeEEEEE
Confidence            3477899999999999999999999999986543211    0  0           012246799999999999999999


Q ss_pred             EEcCCCceEEEEEEEEE
Q psy14896        743 ASNDRSALESSVTISIQ  759 (813)
Q Consensus       743 a~N~~G~~~~~~~l~V~  759 (813)
                      |.|..|.+.+++.|.|.
T Consensus        93 a~N~~G~~~~~~~L~Vl  109 (109)
T d2fdbp2          93 AGNSIGISFHSAWLTVL  109 (109)
T ss_dssp             EECSSCEEEEEEEEEEC
T ss_pred             EEECCCEEEEEEEEEEC
Confidence            99999999999999883

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=1.5e-13  Score=109.30  Aligned_cols=83  Identities=23%  Similarity=0.304  Sum_probs=66.8

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeec-cCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCe
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAG-GYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG  270 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~-g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G  270 (813)
                      +...|.+..+.+|     +++.|.|.+. |.|.|.|+|+|+|..+.           ..+....+++|.|.+. +.+|+|
T Consensus         5 ~~~~p~~~~v~~G-----~~~~l~C~~~~~~p~~~v~W~k~~~~~~-----------~~~~~~~~~~L~i~~v-~~~d~G   67 (89)
T d1gl4b_           5 TVEEQRSQSVRPG-----ADVTFICTAKSKSPAYTLVWTRLHNGKL-----------PSRAMDFNGILTIRNV-QPSDAG   67 (89)
T ss_dssp             EECSCCEEEECTT-----CCEEEEEEEEESSSCCEEEEEEGGGBCC-----------CTTEEEETTEEEECSC-CGGGCE
T ss_pred             EEcCCCeEEEeCC-----CcEEEEEEccCCCCCCEEEEecCCceee-----------ccccEeeceEEEEecC-CcccCE
Confidence            4445677788777     6799999996 78899999999997642           2234566889999886 899999


Q ss_pred             eEEEEeecCceeeEeeeeEEee
Q psy14896        271 SYHCKASNKFGSIISESVQLAF  292 (813)
Q Consensus       271 ~Y~C~a~n~~g~~~s~~~~l~v  292 (813)
                      .|+|.|+|..|.. +..++|.|
T Consensus        68 ~Y~C~a~N~~G~~-~~~~~l~V   88 (89)
T d1gl4b_          68 TYVCTGSNMFAMD-QGTATLHV   88 (89)
T ss_dssp             EEEEEEECSSCEE-EEEEEEEE
T ss_pred             EEEEEEEECCCEE-EEEEEEEE
Confidence            9999999999987 66777776

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=6.1e-14  Score=110.79  Aligned_cols=78  Identities=23%  Similarity=0.349  Sum_probs=66.1

Q ss_pred             cCCCCCCeEEEEEEecCC-CCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCce-EEEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGY-PVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSAL-ESSVTISIQ  759 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~-P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~  759 (813)
                      ..+.+|++++|.|.+.+. |++.+.|||||..+....    ..+.|.|.+++.+|+|.|.|+|.|..|.. +..+.|+|.
T Consensus        10 ~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~----~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~i~V~   85 (89)
T d1f2qa2          10 EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY----ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVI   85 (89)
T ss_dssp             SEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC----CSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             CeEeCCCEEEEEEEecCCCCCeEEEEEEeeecccccc----ccceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEEEEEE
Confidence            457899999999999866 456999999999886432    25689999999999999999999998864 568999999


Q ss_pred             cCCc
Q psy14896        760 AEPN  763 (813)
Q Consensus       760 ~~P~  763 (813)
                      .+|+
T Consensus        86 ~~Pr   89 (89)
T d1f2qa2          86 KAPR   89 (89)
T ss_dssp             CSCC
T ss_pred             eCCC
Confidence            9985

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.46  E-value=6.1e-14  Score=110.54  Aligned_cols=76  Identities=20%  Similarity=0.384  Sum_probs=63.7

Q ss_pred             cCCCCCCeEEEEEEecCC-CCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCce-EEEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGY-PVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSAL-ESSVTISIQ  759 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~-P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~  759 (813)
                      ..+.+|++++|.|.+.+. |.+.+.|||||..+...    ..+..|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|+
T Consensus        10 ~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~----~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~l~V~   85 (88)
T d2fcba2          10 LEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFS----RSDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVTITVQ   85 (88)
T ss_dssp             SEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE----SSCCEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             CeEecCCeEEEEEEecCCCCCcEEEEEeeccccccc----ccccccccCccCHHHCCeEEEEEEeCCCCEEeeeEEEEEe
Confidence            457899999999999754 66799999999887432    235689999999999999999999999875 467899998


Q ss_pred             cC
Q psy14896        760 AE  761 (813)
Q Consensus       760 ~~  761 (813)
                      +|
T Consensus        86 ~P   87 (88)
T d2fcba2          86 AP   87 (88)
T ss_dssp             CC
T ss_pred             CC
Confidence            76

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.46  E-value=8e-14  Score=112.64  Aligned_cols=82  Identities=24%  Similarity=0.487  Sum_probs=61.8

Q ss_pred             eeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeec
Q psy14896        199 VVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASN  278 (813)
Q Consensus       199 ~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n  278 (813)
                      ..+.+|     +++.|.|.+.|+|.|.|+|||||.+|.....     ..........++|.|.+. +.+|+|.|+|.|+|
T Consensus        15 ~~v~~G-----~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~-----~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~N   83 (97)
T d3dara1          15 HAVPAA-----NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHR-----IGGYKVRNQHWSLIMESV-VPSDKGNYTCVVEN   83 (97)
T ss_dssp             EEECTT-----CCEEEECCEEEESCCEEEEEETTEECCGGGS-----TTCCEEEGGGTEEEECSC-CGGGCEEEEEEEEE
T ss_pred             EEECCC-----CcEEEEEEEeEECCCEEEEEECCEeccccCc-----eeeEEEcCCcEEEEECCC-CcccCEEEEEEEEE
Confidence            445555     7799999999999999999999998743211     111111223467888885 89999999999999


Q ss_pred             CceeeEeeeeEEee
Q psy14896        279 KFGSIISESVQLAF  292 (813)
Q Consensus       279 ~~g~~~s~~~~l~v  292 (813)
                      ..|.+ +.++.|.|
T Consensus        84 ~~G~~-~~~~~l~V   96 (97)
T d3dara1          84 EYGSI-NHTYHLDV   96 (97)
T ss_dssp             TTEEE-EEEEEEEE
T ss_pred             CCCEE-EEEEEEEE
Confidence            99987 67787776

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=8.8e-14  Score=111.18  Aligned_cols=85  Identities=24%  Similarity=0.422  Sum_probs=65.6

Q ss_pred             CCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEee----CCeEEEcCCccccCCe
Q psy14896        195 QPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS----GGNLIINDPRQVEDRG  270 (813)
Q Consensus       195 ~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~d~G  270 (813)
                      .|.++.+.+|     ++++|.|.+.|.|.|.|.|+|||..+....        ..++...    ...|.|.+. +.+|+|
T Consensus         2 ~P~~~~v~~G-----~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~--------~~~~~~~~~~~~~~L~I~~~-~~~D~G   67 (91)
T d1rhfa1           2 APVKLTVSQG-----QPVKLNCSVEGMEEPDIQWVKDGAVVQNLD--------QLYIPVSEQHWIGFLSLKSV-ERSDAG   67 (91)
T ss_dssp             CCEEEEEETT-----CCEEEEEEEESCSSCCEEEEETTEECCSSE--------EEEEEEETTEEEEEEEESSC-CGGGCE
T ss_pred             cCeeEEEcCC-----CeEEEEEEEEecCCceEEEEEeecccccce--------eeeeeecccCceeeEEECCC-CcccCE
Confidence            3677888777     779999999999999999999998763221        1122222    234667664 899999


Q ss_pred             eEEEEeecCceeeEeeeeEEeee
Q psy14896        271 SYHCKASNKFGSIISESVQLAFG  293 (813)
Q Consensus       271 ~Y~C~a~n~~g~~~s~~~~l~v~  293 (813)
                      .|+|.|+|..|...|..+.|.|.
T Consensus        68 ~Y~C~a~N~~G~~~S~~~~l~V~   90 (91)
T d1rhfa1          68 RYWCQVEDGGETEISQPVWLTVE   90 (91)
T ss_dssp             EEEEEESSCTTCEECCCEEEEEE
T ss_pred             EEEEEEEECCCCEEEEEEEEEEE
Confidence            99999999999887888888874

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.3e-13  Score=112.70  Aligned_cols=79  Identities=19%  Similarity=0.410  Sum_probs=64.0

Q ss_pred             CcCCCCCCeEEEEEEecCCCCC-eEEEEeCCcccCC------Ccee----eecceEEEECCCC-CCCCEEEEEEEEcCCC
Q psy14896        681 PEAPKAGDKVRLECVAFGYPVP-SYNWTRRGSPLPR------NAYF----ENFNRILTIPNVK-VEDQGEYICRASNDRS  748 (813)
Q Consensus       681 ~~~~~~G~~v~l~C~~~g~P~p-~i~W~k~g~~l~~------~~~~----~~~~~~L~i~~v~-~~d~G~Y~C~a~N~~G  748 (813)
                      ...+.+|+.++|.|.+.|.|+| .++|+|++..+..      ..++    .....+|.|.++. .+|+|.|+|.|.|.+|
T Consensus        11 ~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~G   90 (101)
T d3b5ha1          11 SEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKG   90 (101)
T ss_dssp             EEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTE
T ss_pred             cEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEEEEEEEEECCC
Confidence            3668899999999999999988 7999998754321      1112    2234589999998 5799999999999999


Q ss_pred             ceEEEEEEEEE
Q psy14896        749 ALESSVTISIQ  759 (813)
Q Consensus       749 ~~~~~~~l~V~  759 (813)
                      .++..+.|.|+
T Consensus        91 ~~~~~~~L~Vr  101 (101)
T d3b5ha1          91 SDQAIITLRVR  101 (101)
T ss_dssp             EEEEEEEEEEC
T ss_pred             EEEEEEEEEEC
Confidence            99999999984

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=2.6e-13  Score=109.50  Aligned_cols=89  Identities=25%  Similarity=0.414  Sum_probs=68.7

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe--eCCeEEEcCCccc
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL--SGGNLIINDPRQV  266 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~  266 (813)
                      +|.|.  +.+..+.+|     ++++|+|.+.+ |.+.|.|||+|..|.          .+.++.+  .+++|.|.+. +.
T Consensus         5 ~P~i~--~~~~~v~~g-----~~v~l~C~~~~-~~~~v~W~~~~~~l~----------~~~~~~~~~~~~~L~I~~v-~~   65 (96)
T d1l6za2           5 QPFLQ--VTNTTVKEL-----DSVTLTCLSND-IGANIQWLFNSQSLQ----------LTERMTLSQNNSILRIDPI-KR   65 (96)
T ss_dssp             CCCEE--CSCSEECTT-----SCEEEEECCCC-SSCEEEEEETTEECC----------CCTTEEEETTTTEEEECSC-CG
T ss_pred             CCeEE--cCceEEeCC-----CeEEEEEccCC-CCCCEEEEEeeeecc----------cccceeccCCceEEEEecc-ch
Confidence            35554  456666666     77999999977 668999999998763          2223333  3567888885 89


Q ss_pred             cCCeeEEEEeecCceeeEeeeeEEeeeeec
Q psy14896        267 EDRGSYHCKASNKFGSIISESVQLAFGFIG  296 (813)
Q Consensus       267 ~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~  296 (813)
                      +|+|.|+|.|.|..|...|..+.|+|.++|
T Consensus        66 ~d~G~Y~C~a~N~~g~~~S~~~~L~V~~~P   95 (96)
T d1l6za2          66 EDAGEYQCEISNPVSVRRSNSIKLDIIFDP   95 (96)
T ss_dssp             GGCEEEEEEEESSSCCEECCCCEEEECCSC
T ss_pred             hhceEEEEEEEeCCCCeEEEeEEEEEEcCC
Confidence            999999999999999988888999998766

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.7e-14  Score=114.29  Aligned_cols=89  Identities=22%  Similarity=0.275  Sum_probs=69.5

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccC
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED  268 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d  268 (813)
                      .|.|...+.+..+.+|     +++.|.|.+.|.|.|.|+|+|+|.++....        ........++|.|.+. +.+|
T Consensus         2 ~P~i~~~~~~~~v~~G-----~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~--------~~~~~~~~~~L~i~~~-~~~d   67 (92)
T d2ifga1           2 VPTLKVQVPNASVDVG-----DDVLLRCQVEGRGLEQAGWILTELEQSATV--------MKSGGLPSLGLTLANV-TSDL   67 (92)
T ss_dssp             CCEEEEECCSSCCBTT-----CCEEEEEEEECSSCCCCCEEESCCCSSEEE--------CCCCCSSEEEEEEESC-CSTT
T ss_pred             CCEEEEeCCCEEEeCC-----CEEEEeeeccCCCCcEEEEEECCceeeeee--------eeeeeccceeEEEccc-cccc
Confidence            4889999999888777     779999999999999999999997663211        1111223456888885 8899


Q ss_pred             Ce-eEEEEeecCceeeEeeeeEEee
Q psy14896        269 RG-SYHCKASNKFGSIISESVQLAF  292 (813)
Q Consensus       269 ~G-~Y~C~a~n~~g~~~s~~~~l~v  292 (813)
                      .| .|+|.|+|..|.+ +.++.|.|
T Consensus        68 ~G~~Y~C~a~N~~G~~-~~s~~l~V   91 (92)
T d2ifga1          68 NRKNVTCWAENDVGRA-EVSVQVNV   91 (92)
T ss_dssp             TTCCEEECCEETTEEC-CEEECCCC
T ss_pred             cceEEEEEEEcCCCEE-EEEEEEEE
Confidence            98 7999999999987 56676665

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.43  E-value=3.5e-13  Score=108.80  Aligned_cols=83  Identities=24%  Similarity=0.402  Sum_probs=64.8

Q ss_pred             CCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe----eCCeEEEcCCccccCCee
Q psy14896        196 PTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL----SGGNLIINDPRQVEDRGS  271 (813)
Q Consensus       196 p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~~d~G~  271 (813)
                      +.++.+.+|     +++.|.|.+.|.|.|.|.|||+|.++...        ...++..    ...+|.|.+. +.+|+|.
T Consensus        10 ~~~~~~~~G-----~~v~l~C~~~g~P~~~v~W~k~g~~i~~~--------~~~~~~~~~~~~~~~L~I~~~-~~~D~G~   75 (97)
T d1biha3          10 SKDMMAKAG-----DVTMIYCMYGSNPMGYPNYFKNGKDVNGN--------PEDRITRHNRTSGKRLLFKTT-LPEDEGV   75 (97)
T ss_dssp             CCSEEEETT-----SCEEEEEEEECSSCCCCEEEETTEECCCC--------TTSSEESCSSSTTSEEEESSC-CGGGCEE
T ss_pred             CCCEEEecC-----CeEEEEEEEEEecCCEEEEEEeeeecccc--------ceeeeeeeeecCCCEEEEEec-cccccEE
Confidence            467777777     67999999999999999999999876422        2222221    2346777775 8999999


Q ss_pred             EEEEeecCceeeEeeeeEEee
Q psy14896        272 YHCKASNKFGSIISESVQLAF  292 (813)
Q Consensus       272 Y~C~a~n~~g~~~s~~~~l~v  292 (813)
                      |+|.|.|..|.+.+.++.|+|
T Consensus        76 Y~C~a~N~~G~~~s~s~~L~V   96 (97)
T d1biha3          76 YTCEVDNGVGKPQKHSLKLTV   96 (97)
T ss_dssp             EEEEECCSSSSCEEEEEEEEE
T ss_pred             EEEEEEECCCcEEEEEEEEEE
Confidence            999999999987677788876

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=2.5e-13  Score=109.79  Aligned_cols=78  Identities=23%  Similarity=0.408  Sum_probs=62.5

Q ss_pred             cCCCCCCeEEEEEEecCCCC-CeEEEEe-CCcccCCCc-ee-----eecceEEEECCCCCCCCEEEEEEEEcCCCce-EE
Q psy14896        682 EAPKAGDKVRLECVAFGYPV-PSYNWTR-RGSPLPRNA-YF-----ENFNRILTIPNVKVEDQGEYICRASNDRSAL-ES  752 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~-p~i~W~k-~g~~l~~~~-~~-----~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~  752 (813)
                      ..+.+|+++.|.|.+.|.|+ |.|+|+| +|..+..+. ++     ....++|.|.+++.+|+|.|+|.|.|..|+. ++
T Consensus        10 ~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   89 (97)
T d1epfa1          10 GEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEA   89 (97)
T ss_dssp             EEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEEE
T ss_pred             EEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCCcEEEE
Confidence            56789999999999999985 7999999 455554432 22     2234689999999999999999999999975 46


Q ss_pred             EEEEEEE
Q psy14896        753 SVTISIQ  759 (813)
Q Consensus       753 ~~~l~V~  759 (813)
                      ++.|.|.
T Consensus        90 tv~l~V~   96 (97)
T d1epfa1          90 TVNVKIF   96 (97)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            7888875

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.42  E-value=1.2e-13  Score=108.93  Aligned_cols=75  Identities=21%  Similarity=0.396  Sum_probs=62.3

Q ss_pred             cCCCCCCeEEEEEEecC-CCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCce-EEEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFG-YPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSAL-ESSVTISIQ  759 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g-~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~  759 (813)
                      ..+.+|++++|.|.+.+ .|.+.++|||||..+...    .....|.|.+++.+|+|.|+|+|.|..|.. +..+.|+|+
T Consensus        12 ~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~----~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v~itV~   87 (89)
T d1fnla2          12 WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF----HHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITIT   87 (89)
T ss_dssp             SEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE----EECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             CeEccCCeEEEEEEecCCCCCcEEEEEEccccccee----ccccccEECccceeccceEEEEEEeCCCCeEEeeEEEEEE
Confidence            34689999999999974 566689999999887532    235689999999999999999999998875 457888887


Q ss_pred             c
Q psy14896        760 A  760 (813)
Q Consensus       760 ~  760 (813)
                      +
T Consensus        88 E   88 (89)
T d1fnla2          88 Q   88 (89)
T ss_dssp             C
T ss_pred             e
Confidence            5

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=3.5e-13  Score=105.23  Aligned_cols=75  Identities=12%  Similarity=0.163  Sum_probs=60.6

Q ss_pred             eeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeec
Q psy14896        199 VVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASN  278 (813)
Q Consensus       199 ~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n  278 (813)
                      ..+.+|     ++++|.|.+.|.|.|.|+|++++..+                ...+.+|.|.+. +.+|+|.|+|.|.|
T Consensus         9 ~~v~~G-----~~~~L~C~~~g~p~P~i~W~~~~~~~----------------~~~~~~l~i~~v-~~~DsG~Y~C~a~N   66 (84)
T d2nxyb2           9 THLLQG-----QSLTLTLESPPGSSPSVQCRSPRGKN----------------IQGGKTLSVSQL-ELQDSGTWTCTVLQ   66 (84)
T ss_dssp             SCEETT-----CCEEEEEECCTTCCCEEEEECTTCCE----------------EEESSEEEESSC-CGGGCEEEEEEEEE
T ss_pred             eEEECC-----CeEEEEEEeEcCCchheEEEeecccc----------------eeeeeeeeeeec-ccccccEEEEEEEe
Confidence            445555     77999999999999999999998543                234567888875 89999999999999


Q ss_pred             CceeeEeeeeEEeeeeec
Q psy14896        279 KFGSIISESVQLAFGFIG  296 (813)
Q Consensus       279 ~~g~~~s~~~~l~v~~~~  296 (813)
                      ..|.. +..+.|.|...|
T Consensus        67 ~~g~~-~~~~~v~V~~~~   83 (84)
T d2nxyb2          67 NQKKV-EFKIDIVVLAFQ   83 (84)
T ss_dssp             TTEEE-EEEEEECEECCC
T ss_pred             CCCEE-EEEEEEEEEecC
Confidence            99987 667888776543

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=7e-14  Score=114.84  Aligned_cols=81  Identities=23%  Similarity=0.317  Sum_probs=64.2

Q ss_pred             CCcCCCCCCeEEEEEEecCCC-CCeEEEEeCCcccCCCc---e--eee----cceEEEECCCCCCCCEEEEEEEEcCCCc
Q psy14896        680 FPEAPKAGDKVRLECVAFGYP-VPSYNWTRRGSPLPRNA---Y--FEN----FNRILTIPNVKVEDQGEYICRASNDRSA  749 (813)
Q Consensus       680 ~~~~~~~G~~v~l~C~~~g~P-~p~i~W~k~g~~l~~~~---~--~~~----~~~~L~i~~v~~~d~G~Y~C~a~N~~G~  749 (813)
                      ....+.+|+++.|.|.+.|.| .|.|+|+|++..+....   .  ...    ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus        11 ~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   90 (104)
T d2aw2a1          11 SEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNL   90 (104)
T ss_dssp             EEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcCCCe
Confidence            335788999999999999999 58999999988763221   1  111    1236999999999999999999999998


Q ss_pred             eE-EEEEEEEEc
Q psy14896        750 LE-SSVTISIQA  760 (813)
Q Consensus       750 ~~-~~~~l~V~~  760 (813)
                      .. .++.|.|.+
T Consensus        91 ~~s~~~~l~V~e  102 (104)
T d2aw2a1          91 IESHSTTLYVTD  102 (104)
T ss_dssp             EECCCEEEEEEC
T ss_pred             EEEEEEEEEEEE
Confidence            65 478888863

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=1.4e-13  Score=114.61  Aligned_cols=79  Identities=22%  Similarity=0.410  Sum_probs=62.9

Q ss_pred             cCCCCCCeEEEEEEec-CCCCCeEEEEeCCcccCCCce------------eeecceEEEECCCCCCCCEEEEEEEEcCCC
Q psy14896        682 EAPKAGDKVRLECVAF-GYPVPSYNWTRRGSPLPRNAY------------FENFNRILTIPNVKVEDQGEYICRASNDRS  748 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~-g~P~p~i~W~k~g~~l~~~~~------------~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G  748 (813)
                      ..+.+|++++|.|.+. |.|.|.|+|+|+|..+.....            .....+.|.|.+++.+|+|.|+|.|+|.+|
T Consensus        12 ~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G   91 (110)
T d1f97a2          12 SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYG   91 (110)
T ss_dssp             SEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSS
T ss_pred             CEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCC
Confidence            3578999999999985 899999999999988754432            122345799999999999999999999999


Q ss_pred             ceEE--EEEEEEEc
Q psy14896        749 ALES--SVTISIQA  760 (813)
Q Consensus       749 ~~~~--~~~l~V~~  760 (813)
                      +..+  .+.|.|..
T Consensus        92 ~~~~s~~v~l~V~~  105 (110)
T d1f97a2          92 TAMRSEAAHMDAVE  105 (110)
T ss_dssp             CCEECCCEEEEEES
T ss_pred             cEEEEEEEEEEEEe
Confidence            8765  56666654

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.41  E-value=3.7e-13  Score=105.96  Aligned_cols=79  Identities=19%  Similarity=0.296  Sum_probs=61.1

Q ss_pred             CceeecCCCccccccEEEEeeecc-CCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEE
Q psy14896        197 TDVVFDLSKRSILNDITLSCYAGG-YPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCK  275 (813)
Q Consensus       197 ~~~~v~~g~~~~g~~v~l~C~~~g-~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~  275 (813)
                      ....+.+|     ++++|+|.+.+ .|.+.+.|||||+.+..              ...++.|.|.+. +.+|+|.|+|.
T Consensus         8 p~~~v~eG-----~~v~L~C~~~~~~p~~~~~W~k~g~~~~~--------------~~~~~~l~i~~v-~~~dsG~Y~C~   67 (88)
T d2fcba2           8 PHLEFQEG-----ETIVLRCHSWKDKPLVKVTFFQNGKSKKF--------------SRSDPNFSIPQA-NHSHSGDYHCT   67 (88)
T ss_dssp             SCSEECTT-----CCEEEEEEEGGGCCCEEEEEEETTEEEEE--------------ESSCCEEEETTC-CGGGCEEEEEE
T ss_pred             CCCeEecC-----CeEEEEEEecCCCCCcEEEEEeecccccc--------------cccccccccCcc-CHHHCCeEEEE
Confidence            34456566     77999999964 56779999999976521              123556888775 89999999999


Q ss_pred             eecCceeeEeeeeEEeeeee
Q psy14896        276 ASNKFGSIISESVQLAFGFI  295 (813)
Q Consensus       276 a~n~~g~~~s~~~~l~v~~~  295 (813)
                      |.|..|...|..+.|+|.+|
T Consensus        68 a~n~~g~~~S~~v~l~V~~P   87 (88)
T d2fcba2          68 GNIGYTLYSSKPVTITVQAP   87 (88)
T ss_dssp             EEETTEEEECCCEEEEECCC
T ss_pred             EEeCCCCEEeeeEEEEEeCC
Confidence            99999987788888888654

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=4.4e-13  Score=109.57  Aligned_cols=93  Identities=22%  Similarity=0.371  Sum_probs=69.2

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCC-eEEEeecccccccccccccccCCCccEEee----CCeEEEcCC
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPLSDKRFTLS----GGNLIINDP  263 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p-~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~----~~~l~i~~~  263 (813)
                      ||.|...+.+..+.+|     +.++|.|.+.|.|.| .+.|||++..+...    +......++.+.    ..+|.|.+.
T Consensus         2 PP~i~~~~~~~~v~~G-----~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~----~~~~~~~~~~~~~~~~~~~L~I~~v   72 (101)
T d3b5ha1           2 PPRVKAVKSSEHINEG-----ETAMLVCKSESVPPVTDWAWYKITDSEDKA----LMNGSESRFFVSSSQGRSELHIENL   72 (101)
T ss_dssp             SCCCEESCSEEEECTT-----SCEEEEEECCCSSCCCEEEEEECCSSSCEE----CCTTGGGTEEEEEETTEEEEEECSC
T ss_pred             CceEEEcCCcEEECcC-----CeEEEEEEEEecCCeeEEEEEeccceeeee----cccCCCceEEEEeCCCEEEEEEecc
Confidence            7899999999988777     669999999999988 79999987544221    112233344432    225777775


Q ss_pred             cc-ccCCeeEEEEeecCceeeEeeeeEEee
Q psy14896        264 RQ-VEDRGSYHCKASNKFGSIISESVQLAF  292 (813)
Q Consensus       264 ~~-~~d~G~Y~C~a~n~~g~~~s~~~~l~v  292 (813)
                       + .+|+|.|+|.|+|..|.. +..+.|.|
T Consensus        73 -~~~~D~G~Y~C~A~N~~G~~-~~~~~L~V  100 (101)
T d3b5ha1          73 -NMEADPGQYRCNGTSSKGSD-QAIITLRV  100 (101)
T ss_dssp             -CTTTSSEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             -ccccCCEEEEEEEEECCCEE-EEEEEEEE
Confidence             5 579999999999999988 66777776

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.41  E-value=5.3e-13  Score=105.19  Aligned_cols=82  Identities=18%  Similarity=0.306  Sum_probs=63.1

Q ss_pred             eeCCCceeecCCCccccccEEEEeeec-cCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCee
Q psy14896        193 IKQPTDVVFDLSKRSILNDITLSCYAG-GYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS  271 (813)
Q Consensus       193 ~~~p~~~~v~~g~~~~g~~v~l~C~~~-g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~  271 (813)
                      +.++....+.+|     ++++|+|.+. +.|.+.+.|||||+.+.              ....++.|.|.+. +.+|+|.
T Consensus         6 ilq~p~~~v~eG-----~~v~L~C~~~~~~p~~~~~W~kng~~~~--------------~~~~~~~l~I~~v-~~~dsG~   65 (89)
T d1fnla2           6 LLQAPRWVFKEE-----DPIHLRCHSWKNTALHKVTYLQNGKDRK--------------YFHHNSDFHIPKA-TLKDSGS   65 (89)
T ss_dssp             EEECSCSEEETT-----CCEEEEEEECTTCCCEEEEEEETTEEEE--------------EEEECCCEEESSC-CGGGCEE
T ss_pred             EEECCCCeEccC-----CeEEEEEEecCCCCCcEEEEEEcccccc--------------eeccccccEECcc-ceeccce
Confidence            334445556666     7799999996 55677999999997652              1234567888875 8999999


Q ss_pred             EEEEeecCceeeEeeeeEEeeee
Q psy14896        272 YHCKASNKFGSIISESVQLAFGF  294 (813)
Q Consensus       272 Y~C~a~n~~g~~~s~~~~l~v~~  294 (813)
                      |+|+|.|..|...|..+.|+|..
T Consensus        66 Y~C~a~n~~~~~~S~~v~itV~E   88 (89)
T d1fnla2          66 YFCRGLVGSKNVSSETVNITITQ   88 (89)
T ss_dssp             EEEEEEETTEEEECCCEEEEEEC
T ss_pred             EEEEEEeCCCCeEEeeEEEEEEe
Confidence            99999999998778888888753

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.8e-13  Score=108.60  Aligned_cols=77  Identities=19%  Similarity=0.336  Sum_probs=61.7

Q ss_pred             CCCcCCCCCCeEEEEEEecCCCC-CeEEEEeCCcccCCCcee-eecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEE
Q psy14896        679 TFPEAPKAGDKVRLECVAFGYPV-PSYNWTRRGSPLPRNAYF-ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI  756 (813)
Q Consensus       679 ~~~~~~~~G~~v~l~C~~~g~P~-p~i~W~k~g~~l~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l  756 (813)
                      .....+.+|++++|.|.+.|.|+ +.|+|+|+|.++....+. ...+.+|.|.+++.+|+|.|+|.|.|..+.   ++.|
T Consensus        13 ~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~---t~~l   89 (93)
T d1n26a1          13 RGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRPAG---TVHL   89 (93)
T ss_dssp             TTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEESSEEEECSCCGGGCEEEEEESSSSCSC---EEEE
T ss_pred             CCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEEecCCCEEEECCCChhcCEEEEEEECCcccc---EEEE
Confidence            33467889999999999998775 599999999999766543 344678999999999999999999886533   4455


Q ss_pred             EE
Q psy14896        757 SI  758 (813)
Q Consensus       757 ~V  758 (813)
                      .|
T Consensus        90 ~V   91 (93)
T d1n26a1          90 LV   91 (93)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=3.3e-14  Score=110.27  Aligned_cols=73  Identities=21%  Similarity=0.301  Sum_probs=58.3

Q ss_pred             CCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEE
Q psy14896        196 PTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCK  275 (813)
Q Consensus       196 p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~  275 (813)
                      |.+..+.+|     +++.|.|.+.|+|.|+|+|+|||..+..                 .+.  +.+ ++.+|+|.|+|.
T Consensus        11 p~~~~~~~G-----~~~~l~C~a~G~P~P~v~W~k~g~~~~~-----------------~~~--~~~-v~~~d~G~Y~C~   65 (84)
T d2oz4a3          11 PGNWTWPEN-----SQQTPMCQAWGNPLPELKCLKDGTFPLP-----------------IGE--SVT-VTRDLEGTYLCR   65 (84)
T ss_dssp             CSEEEEETT-----CEECCCCCCEEESCCEEEEEETTTEECC-----------------TTS--CEE-CCGGGCEEEEEE
T ss_pred             CccEEEeCC-----CEEEEEEEEeEcCccEEEEEEeecccee-----------------eee--eec-cccCCCCEEEEE
Confidence            677888777     6799999999999999999999975421                 111  122 378999999999


Q ss_pred             eecCceeeEeeeeEEeeee
Q psy14896        276 ASNKFGSIISESVQLAFGF  294 (813)
Q Consensus       276 a~n~~g~~~s~~~~l~v~~  294 (813)
                      |+|..|.. +..+.|.|..
T Consensus        66 A~N~~G~~-~~~~~l~V~~   83 (84)
T d2oz4a3          66 ARSTQGEV-TREVTVNVLS   83 (84)
T ss_dssp             EEETTEEE-EEEEEEEEEC
T ss_pred             EEcCCCEE-EEEEEEEEEC
Confidence            99999987 7778888754

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=5.6e-14  Score=115.83  Aligned_cols=77  Identities=25%  Similarity=0.477  Sum_probs=63.4

Q ss_pred             cCCCCCCeEEEEEEec-CCCCCeEEEEeCCcccCCCcee-----------eecceEEEECCCCCCCCEEEEEEEEcCCCc
Q psy14896        682 EAPKAGDKVRLECVAF-GYPVPSYNWTRRGSPLPRNAYF-----------ENFNRILTIPNVKVEDQGEYICRASNDRSA  749 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~-g~P~p~i~W~k~g~~l~~~~~~-----------~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~  749 (813)
                      ..+.+|++++|.|.+. |.|.|.++|+|+|..+......           ....+.|+|.+++.+|+|.|+|.|+|.+|+
T Consensus        12 ~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~   91 (104)
T d1nbqa2          12 SSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGT   91 (104)
T ss_dssp             SEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSC
T ss_pred             CEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEECCCc
Confidence            4578899999999984 8999999999999988655322           122457999999999999999999999999


Q ss_pred             eEEEEEEEE
Q psy14896        750 LESSVTISI  758 (813)
Q Consensus       750 ~~~~~~l~V  758 (813)
                      ..+++.|.|
T Consensus        92 ~~~s~~v~v  100 (104)
T d1nbqa2          92 PMTSNAVRM  100 (104)
T ss_dssp             CEECCCBCC
T ss_pred             eEEEEEEEE
Confidence            877655544

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.40  E-value=3.3e-14  Score=115.18  Aligned_cols=73  Identities=29%  Similarity=0.516  Sum_probs=60.3

Q ss_pred             CCCCeEEEEEEecCCCCCeEEEEeCCcccCCCc---eeeecceEEEECCCCCCCCEEEEEEEEcCCCce-EEEEEEE
Q psy14896        685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA---YFENFNRILTIPNVKVEDQGEYICRASNDRSAL-ESSVTIS  757 (813)
Q Consensus       685 ~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~---~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~  757 (813)
                      ..|++++|.|.+.|.|.|.++|+|||..|..+.   ........|.|..+..+|+|.|+|+|.|.+|.. +.++.|.
T Consensus        20 ~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~N~~G~~~S~~a~L~   96 (97)
T d1cs6a1          20 SAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLR   96 (97)
T ss_dssp             CSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEE
T ss_pred             cCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeeeeeEEEEecccccCCEEEEEEEEECCCEEEEEEEEEe
Confidence            346899999999999999999999999986543   223445679999999999999999999999986 3466664

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=5e-13  Score=106.03  Aligned_cols=79  Identities=18%  Similarity=0.281  Sum_probs=62.9

Q ss_pred             CCCceeeCCCceeecCCCccccccEEEEeeeccCCC-CeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccc
Q psy14896        188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPN-PSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQV  266 (813)
Q Consensus       188 ~~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~-p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  266 (813)
                      .+|.|...+..+.+.+|     ++++|.|.+.|.|. ++|+|+|+|..+.         .....+...+++|.|.+. +.
T Consensus         5 ~~P~~~~~~~~v~~~~G-----~~v~L~C~~~g~~~~~~i~W~k~~~~l~---------~~~~~~~~~~~~L~I~~v-~~   69 (93)
T d1n26a1           5 RCPAQEVARGVLTSLPG-----DSVTLTCPGVEPEDNATVHWVLRKPAAG---------SHPSRWAGMGRRLLLRSV-QL   69 (93)
T ss_dssp             CCCCCCCCTTEEEECTT-----CCEEEECTTSCTTCCSEEEEEEECSSSS---------CCCEEEEEESSEEEECSC-CG
T ss_pred             CCCcEEeCCCCEEEeCC-----CcEEEEEEeecCCCCceEEEEEcccccc---------ceeeEEecCCCEEEECCC-Ch
Confidence            46888888888888777     67999999988665 5999999998762         233344456788888885 89


Q ss_pred             cCCeeEEEEeecCce
Q psy14896        267 EDRGSYHCKASNKFG  281 (813)
Q Consensus       267 ~d~G~Y~C~a~n~~g  281 (813)
                      +|+|.|+|.|.|..+
T Consensus        70 ~D~G~Y~C~a~n~~~   84 (93)
T d1n26a1          70 HDSGNYSCYRAGRPA   84 (93)
T ss_dssp             GGCEEEEEESSSSCS
T ss_pred             hcCEEEEEEECCccc
Confidence            999999999998654

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=6.6e-13  Score=108.91  Aligned_cols=91  Identities=22%  Similarity=0.257  Sum_probs=68.2

Q ss_pred             CceeeCCCceeecCCCccccccEEEEeeeccCC-CCeEEEeecccccccccccccccCCCccEE-ee-C----CeEEEcC
Q psy14896        190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYP-NPSYEWFKEDYVQDRLVANLIDPLSDKRFT-LS-G----GNLIIND  262 (813)
Q Consensus       190 P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P-~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~-~~-~----~~l~i~~  262 (813)
                      |.|+..|++..+..|     +++.|.|.+.|.| .|.|.|+|+++.+...       ....... .. +    ..|.|.+
T Consensus         4 ~~fi~~~~~~~v~~G-----~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~-------~~~~~~~~~~~~~~~~~~L~I~~   71 (104)
T d2aw2a1           4 QLYIKRQSEHSILAG-----DPFELECPVKYCANRPHVTWCKLNGTTCVK-------LEDRQTSWKEEKNISFFILHFEP   71 (104)
T ss_dssp             EECCCTTEEEEEETT-----SCEEEEEEEECSSSCCEEEEEEECSSCEEE-------CCSSCEEEEECSSCEEEEEEESS
T ss_pred             cEEEecCCeEEEeCC-----CeEEEEEEEEeeCCCCEEEEEecCcccccc-------cceeeeeEEecCCceEEEEEEcc
Confidence            557777888888887     6799999999998 5899999999765321       1111111 11 1    1367777


Q ss_pred             CccccCCeeEEEEeecCceeeEeeeeEEeee
Q psy14896        263 PRQVEDRGSYHCKASNKFGSIISESVQLAFG  293 (813)
Q Consensus       263 ~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~  293 (813)
                      . +.+|+|.|+|.|.|..|...+.++.|.|.
T Consensus        72 v-~~~D~G~Y~C~A~N~~G~~~s~~~~l~V~  101 (104)
T d2aw2a1          72 V-LPNDNGSYRCSANFQSNLIESHSTTLYVT  101 (104)
T ss_dssp             C-CGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             c-cHHHCCeEEEEEEcCCCeEEEEEEEEEEE
Confidence            4 89999999999999999876778888875

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2e-13  Score=110.21  Aligned_cols=81  Identities=16%  Similarity=0.208  Sum_probs=60.7

Q ss_pred             CCCcCCCCCCeEEEEEEecCCCCCeEEEEe---CCcccCCCcee----eecceEEEECCCCCCCCEEEEEEEEcCCCceE
Q psy14896        679 TFPEAPKAGDKVRLECVAFGYPVPSYNWTR---RGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYICRASNDRSALE  751 (813)
Q Consensus       679 ~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k---~g~~l~~~~~~----~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~  751 (813)
                      +.+..+.+|++++|.|.+.|.|.|.+.|++   ++..+......    ....++|.|.++..+|+|.|+|+|.|..|...
T Consensus         8 ~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   87 (96)
T d2c9aa1           8 IQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGI   87 (96)
T ss_dssp             CCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEEEEETTEEEE
T ss_pred             cCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEEEEeCCCeEE
Confidence            445789999999999999999988655443   23333222211    12245799999999999999999999999864


Q ss_pred             -EEEEEEEE
Q psy14896        752 -SSVTISIQ  759 (813)
Q Consensus       752 -~~~~l~V~  759 (813)
                       ..+.|.|+
T Consensus        88 s~~a~L~Vk   96 (96)
T d2c9aa1          88 SNYAELVVK   96 (96)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEEC
Confidence             55799885

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=7.8e-13  Score=104.35  Aligned_cols=85  Identities=19%  Similarity=0.262  Sum_probs=62.7

Q ss_pred             CceeeCC-CceeecCCCccccccEEEEeeec-cCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCcccc
Q psy14896        190 PYFIKQP-TDVVFDLSKRSILNDITLSCYAG-GYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE  267 (813)
Q Consensus       190 P~~~~~p-~~~~v~~g~~~~g~~v~l~C~~~-g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~  267 (813)
                      |.+...| ....+.+|     +++.|+|.+. |.|.|.|+|++++..+.           ..+....+++|.|.+. +.+
T Consensus         3 P~~i~~p~~~~~~~~G-----~~~~l~C~~~~g~p~p~v~W~~~~~~~~-----------~~~~~~~~~~L~i~~v-~~~   65 (90)
T d1gsma1           3 PLQVEPPEPVVAVALG-----ASRQLTCRLACADRGASVQWRGLDTSLG-----------AVQSDTGRSVLTVRNA-SLS   65 (90)
T ss_dssp             SEEEESCCSEEEEETT-----CCEEEEEEECCSSTTCEEEEESSTTTTC-----------CEEEESSEEEEEECSC-CGG
T ss_pred             CcEEeCCCCeEEEEeC-----CcEEEEEEecCCCCccEEEEEEeeeeee-----------eeeccCceeeEEcCcc-Chh
Confidence            4444554 44666666     7799999985 88999999999887541           1122222456777775 999


Q ss_pred             CCeeEEEEeecCceeeEeeeeEEee
Q psy14896        268 DRGSYHCKASNKFGSIISESVQLAF  292 (813)
Q Consensus       268 d~G~Y~C~a~n~~g~~~s~~~~l~v  292 (813)
                      |+|.|+|+|+|..|.. +.++.|.|
T Consensus        66 D~G~Y~C~Asn~~g~~-~~s~~l~V   89 (90)
T d1gsma1          66 AAGTRVCVGSCGGRTF-QHTVQLLV   89 (90)
T ss_dssp             GCEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             hCCcEEEEEEeCCCcE-EEEEEEEE
Confidence            9999999999999986 77788876

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.8e-13  Score=107.45  Aligned_cols=77  Identities=18%  Similarity=0.212  Sum_probs=63.6

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCc--eeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA--YFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ  759 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~--~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  759 (813)
                      ..+.+|++++|.|.+.| |+|.+.|+++|.++....  .....++.|.|.+++.+|+|.|+|.|.|..|..+....|.+.
T Consensus         7 ~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~~l~~~   85 (92)
T d1olza1           7 HFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKH   85 (92)
T ss_dssp             EEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSSSEEEEEEEEE
T ss_pred             eeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeecceeeEEEECCCCHHHCcEEEEEEEEcCCCEEEEEEEEEE
Confidence            45789999999999998 778999999999986543  223345689999999999999999999999987766665543

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.2e-13  Score=108.12  Aligned_cols=73  Identities=19%  Similarity=0.338  Sum_probs=59.8

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCc-ee----eecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-YF----ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI  756 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~-~~----~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l  756 (813)
                      ..+.+|+++.|.|.+. .|+|.++|+|||..|..+. ++    .....+|.|.++..+|+|.|+|+|.|    .+.++.|
T Consensus        16 ~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n----~~~s~~l   90 (94)
T d1pd6a_          16 YQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGG----EKCSTEL   90 (94)
T ss_dssp             EEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETT----EEECCEE
T ss_pred             EEECcCCeEEEEEEEC-CCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEee----EEEEEEE
Confidence            3578999999999995 5889999999999997653 22    23356899999999999999999977    4667778


Q ss_pred             EEE
Q psy14896        757 SIQ  759 (813)
Q Consensus       757 ~V~  759 (813)
                      .|+
T Consensus        91 ~V~   93 (94)
T d1pd6a_          91 FVK   93 (94)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            875

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.3e-13  Score=110.07  Aligned_cols=79  Identities=19%  Similarity=0.315  Sum_probs=64.2

Q ss_pred             cCCCCCCeEEEEE------EecCCCCCeEEEEeCCcccCCCc-eeeecceEEEECCCCCCCCEEEEEEEEcCCCceE---
Q psy14896        682 EAPKAGDKVRLEC------VAFGYPVPSYNWTRRGSPLPRNA-YFENFNRILTIPNVKVEDQGEYICRASNDRSALE---  751 (813)
Q Consensus       682 ~~~~~G~~v~l~C------~~~g~P~p~i~W~k~g~~l~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~---  751 (813)
                      +.+..|+...|.|      .+.|+|.|.|+|+|||++|..+. ++...++.|.|.++..+|+|.|+|+|.|..|...   
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~g~~~~v   88 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPI   88 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEETTEEEEE
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEecCCEEEEcccccccCcEEEEEEEECcCCEEEEE
Confidence            5567899999999      67899999999999999997654 3445567899999999999999999999887543   


Q ss_pred             -EEEEEEEEc
Q psy14896        752 -SSVTISIQA  760 (813)
Q Consensus       752 -~~~~l~V~~  760 (813)
                       ..+.|.|..
T Consensus        89 t~~i~~~v~~   98 (103)
T d1iray2          89 TRVIEFITLE   98 (103)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEEEECC
Confidence             444444443

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.4e-13  Score=107.06  Aligned_cols=78  Identities=22%  Similarity=0.361  Sum_probs=63.3

Q ss_pred             CCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCce--e----eecceEEEECCCCCCCCEEEEEEEEcCCCceE
Q psy14896        678 KTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAY--F----ENFNRILTIPNVKVEDQGEYICRASNDRSALE  751 (813)
Q Consensus       678 ~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~--~----~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~  751 (813)
                      ++.+..+.+|+++.|.|.+ +.|.|.+.|+|+|.++..+..  +    .....+|+|.+++.+|+|.|+|.|.|    .+
T Consensus         6 ~l~~~~v~~G~~v~l~C~v-~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n----~~   80 (90)
T d1x44a1           6 QLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG----GQ   80 (90)
T ss_dssp             CCCCEEEETTEEEEEEEEC-SSSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT----EE
T ss_pred             CCCCEEEeCCCcEEEEEEE-CCCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEec----ce
Confidence            3445778999999999999 468899999999998865542  2    12346899999999999999999977    46


Q ss_pred             EEEEEEEEc
Q psy14896        752 SSVTISIQA  760 (813)
Q Consensus       752 ~~~~l~V~~  760 (813)
                      .++.|+|+.
T Consensus        81 ~~a~l~V~~   89 (90)
T d1x44a1          81 SSAKLSVDL   89 (90)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEEE
Confidence            778888874

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=9.3e-13  Score=104.59  Aligned_cols=72  Identities=18%  Similarity=0.341  Sum_probs=56.3

Q ss_pred             ccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEE-eeCCeEEEcCCccccCCeeEEEEeecCceeeEeeee
Q psy14896        210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESV  288 (813)
Q Consensus       210 ~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~  288 (813)
                      +++.|.|.+.|.|.|.+.|++++..+.          .+.... ...++|.|.+. +.+|+|.|+|.|.|..|.. +.++
T Consensus        17 ~~v~l~C~~~g~p~p~i~W~~~~~~~~----------~~~~~~~~~~~~L~I~~v-~~~d~G~Y~C~a~N~~g~~-~~~~   84 (90)
T d1vcaa2          17 DSVSLTCSTTGCESPFFSWRTQIDSPL----------NGKVTNEGTTSTLTMNPV-SFGNEHSYLCTATCESRKL-EKGI   84 (90)
T ss_dssp             SCEEEEEEEESCSSCEEEEEETTCCCC----------SSEEEEETTEEEEEESSC-CGGGCSEEEEEEEETTEEE-EEEE
T ss_pred             CEEEEEEeccCCCCceEEEEecCccce----------eeeeeeecCCcEEEEecc-cccccceEEEEEEeCCCEE-EEEE
Confidence            779999999999999999999986541          122222 22456777775 8999999999999999987 7778


Q ss_pred             EEeee
Q psy14896        289 QLAFG  293 (813)
Q Consensus       289 ~l~v~  293 (813)
                      +|.|.
T Consensus        85 ~v~V~   89 (90)
T d1vcaa2          85 QVEIY   89 (90)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88763

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.6e-12  Score=107.80  Aligned_cols=91  Identities=25%  Similarity=0.350  Sum_probs=69.7

Q ss_pred             CceeeCCCceeecCCCccccccEEEEeeeccCC---CCeEEEeecccccccccccccccCCCccEEee----------CC
Q psy14896        190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYP---NPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS----------GG  256 (813)
Q Consensus       190 P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P---~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~----------~~  256 (813)
                      |.|+..|.++.+.+|     ++++|.|.+.|.|   .|.|.|||++.....       .....++...          ..
T Consensus         5 ~~Fv~~P~~~~v~~G-----~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~   72 (110)
T d2avga1           5 GLFVMRPQDGEVTVG-----GSITFSARVAGASLLKPPVVKWFKGKWVDLS-------SKVGQHLQLHDSYDRASKVYLF   72 (110)
T ss_dssp             CSEEECCCCEEEETT-----SEEEEEEEEECCSCSSSCEEEEECSTTCCST-------TTCSSSEEEEEEEETTTTEEEE
T ss_pred             CEeEECCCeEEEECC-----CCEEEEEeecCCCCCCCCEEEEEeCceeeec-------ccCCceeEeeeeeEEecccCEE
Confidence            689999999999887     6799999999988   678999999864311       1222222211          23


Q ss_pred             eEEEcCCccccCCeeEEEEeecCceeeEeeeeEEeeee
Q psy14896        257 NLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGF  294 (813)
Q Consensus       257 ~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~  294 (813)
                      +|.|.+. +.+|+|.|+|.|+|..|.. +..+.|.|..
T Consensus        73 ~L~I~~v-~~~D~G~Y~C~a~N~~G~~-~~~~~L~V~~  108 (110)
T d2avga1          73 ELHITDA-QPAFTGGYRCEVSTKDKFD-CSNFNLTVHE  108 (110)
T ss_dssp             EEEEESC-CTTCCEEEEEEEEETTEEE-EEEEEEEEES
T ss_pred             EEEEecc-CHHHCcEEEEEEEECCCeE-EEEEEEEEEe
Confidence            5888885 8999999999999999998 7778888753

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2e-13  Score=112.74  Aligned_cols=78  Identities=21%  Similarity=0.349  Sum_probs=64.3

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCc------------eeeecceEEEECCCCCCCCEEEEEEEEcCCCc
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA------------YFENFNRILTIPNVKVEDQGEYICRASNDRSA  749 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~------------~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~  749 (813)
                      ..+.+|++++|.|.+.|.|.|.|+|+|++..+....            +....+++|.|.+++.+|+|.|+|.|.|..|.
T Consensus        14 v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~G~   93 (105)
T d1nbqa1          14 VRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGN   93 (105)
T ss_dssp             CCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEEEETTSS
T ss_pred             EEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEEEEEEECCCC
Confidence            567899999999999999999999999887654321            11223468999999999999999999999999


Q ss_pred             eEEEEEEEEE
Q psy14896        750 LESSVTISIQ  759 (813)
Q Consensus       750 ~~~~~~l~V~  759 (813)
                      ....+.|.|.
T Consensus        94 ~~~~~~v~v~  103 (105)
T d1nbqa1          94 SYGEVKVKLI  103 (105)
T ss_dssp             CEECCEEECC
T ss_pred             EEEEEEEEEE
Confidence            9887776653

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=4.8e-13  Score=110.61  Aligned_cols=76  Identities=16%  Similarity=0.270  Sum_probs=64.4

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCcee----------------eecceEEEECCCCCCCCE-EEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----------------ENFNRILTIPNVKVEDQG-EYICRAS  744 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~----------------~~~~~~L~i~~v~~~d~G-~Y~C~a~  744 (813)
                      ..+..|++++|.|.+.|.|.|.|+|++||..+......                ....++|+|.+++.+|.| .|+|.|.
T Consensus        12 i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C~A~   91 (107)
T d1iray3          12 MEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAK   91 (107)
T ss_dssp             EECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEEEEE
T ss_pred             EEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEEEEEEE
Confidence            45788999999999999999999999999988644311                011357999999999999 5999999


Q ss_pred             cCCCceEEEEEEE
Q psy14896        745 NDRSALESSVTIS  757 (813)
Q Consensus       745 N~~G~~~~~~~l~  757 (813)
                      |.+|.+++.+.|.
T Consensus        92 N~~G~~~~~i~L~  104 (107)
T d1iray3          92 NTHGIDAAYIQLI  104 (107)
T ss_dssp             CSSCEEEEEEEEE
T ss_pred             eCCCeEEEEEEEE
Confidence            9999999999886

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=3.9e-13  Score=108.79  Aligned_cols=80  Identities=19%  Similarity=0.263  Sum_probs=68.2

Q ss_pred             cCCCCCCeEEEEEEec-CCCCCeEEEEeCCcccCCC----ceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAF-GYPVPSYNWTRRGSPLPRN----AYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI  756 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~-g~P~p~i~W~k~g~~l~~~----~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l  756 (813)
                      ..+.+|+.+.|.|.+. +.|.+.|+|+|+|..+...    .++...+++|.|.+++.+|+|.|+|.|.|..|....++.|
T Consensus        12 ~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~L   91 (101)
T d1iray1          12 LVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISA   91 (101)
T ss_dssp             EEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEETTEEEETTCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccCCEEEeccceecCCEEEEEEEECCCCeEEEEEEE
Confidence            4567899999999986 7899999999999766422    2344456789999999999999999999999999999999


Q ss_pred             EEEcC
Q psy14896        757 SIQAE  761 (813)
Q Consensus       757 ~V~~~  761 (813)
                      .|...
T Consensus        92 ~V~~~   96 (101)
T d1iray1          92 KFVEN   96 (101)
T ss_dssp             EEECC
T ss_pred             EEEeC
Confidence            99753

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=6.7e-13  Score=104.69  Aligned_cols=81  Identities=17%  Similarity=0.153  Sum_probs=63.0

Q ss_pred             CCceeecCCCccccccEEEEeeeccC-CCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEE
Q psy14896        196 PTDVVFDLSKRSILNDITLSCYAGGY-PNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHC  274 (813)
Q Consensus       196 p~~~~v~~g~~~~g~~v~l~C~~~g~-P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C  274 (813)
                      +....+.+|     ++++|.|.+.+. |.+.+.|||||+.+..              ...++.|.|.+. +.+|+|.|+|
T Consensus         7 ~p~~~V~eG-----~~v~L~C~~~~~~~~~~~~w~k~g~~~~~--------------~~~~~~l~i~~~-~~~dsG~Y~C   66 (89)
T d1f2qa2           7 ASAEVVMEG-----QPLFLRCHGWRNWDVYKVIYYKDGEALKY--------------WYENHNISITNA-TVEDSGTYYC   66 (89)
T ss_dssp             ESCSEEETT-----SCEEEEEEEGGGCCEEEEEEEETTEECCS--------------CCCSSEEEESSC-CGGGCEEEEE
T ss_pred             CCcCeEeCC-----CEEEEEEEecCCCCCeEEEEEEeeecccc--------------ccccceEEEeee-eeecCcEEEE
Confidence            344555566     779999999764 5669999999976521              112456788875 8999999999


Q ss_pred             EeecCceeeEeeeeEEeeeeec
Q psy14896        275 KASNKFGSIISESVQLAFGFIG  296 (813)
Q Consensus       275 ~a~n~~g~~~s~~~~l~v~~~~  296 (813)
                      +|.|..|...|..+.|+|.++|
T Consensus        67 ~a~n~~~~~~S~~v~i~V~~~P   88 (89)
T d1f2qa2          67 TGKVWQLDYESEPLNITVIKAP   88 (89)
T ss_dssp             EEEETTEEEECCCEEEEEECSC
T ss_pred             EEEeCCCCeEeeeEEEEEEeCC
Confidence            9999999888889999998776

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=9.2e-13  Score=106.25  Aligned_cols=90  Identities=18%  Similarity=0.193  Sum_probs=65.5

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEee----CCeEEEcCCc
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS----GGNLIINDPR  264 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~  264 (813)
                      +|.|+ .+.++.+.+|     +++.|.|.+.|.|.|.+.|++.+.....       ..........    .++|.|.+. 
T Consensus         2 ~P~f~-~~~~~~v~~G-----~~v~l~C~~~g~p~p~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~L~I~~v-   67 (96)
T d2c9aa1           2 TPHFL-RIQNVEVNAG-----QFATFQCSAIGRTVAGDRLWLQGIDVRD-------APLKEIKVTSSRRFIASFNVVNT-   67 (96)
T ss_dssp             SCEEC-CCCCEEECSS-----SCEEEEEEEESCCCSSCEEEEEETTBCC-------CCEEEEEEEETTEEEEEEEECSC-
T ss_pred             cCeec-ccCCEEEeCC-----CEEEEEEEEeecCCCcEEEEEeeeeeee-------ecCCceeEEEeecCceEEEECCC-
Confidence            58897 5999999888     6799999999999887766543322110       0111111111    346888885 


Q ss_pred             cccCCeeEEEEeecCceeeEeeeeEEee
Q psy14896        265 QVEDRGSYHCKASNKFGSIISESVQLAF  292 (813)
Q Consensus       265 ~~~d~G~Y~C~a~n~~g~~~s~~~~l~v  292 (813)
                      +.+|+|.|+|.|.|..|.+.+..+.|.|
T Consensus        68 ~~~D~G~Y~C~a~N~~G~~~s~~a~L~V   95 (96)
T d2c9aa1          68 TKRDAGKYRCMIRTEGGVGISNYAELVV   95 (96)
T ss_dssp             CGGGCSEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CHHHCeEEEEEEEeCCCeEEEEEEEEEE
Confidence            8999999999999999998787788887

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=4.6e-14  Score=118.79  Aligned_cols=95  Identities=21%  Similarity=0.279  Sum_probs=73.7

Q ss_pred             EEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCC-CCeEEEEeCCcccCCCce--ee--------ecceEEE
Q psy14896        659 LKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYP-VPSYNWTRRGSPLPRNAY--FE--------NFNRILT  727 (813)
Q Consensus       659 l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P-~p~i~W~k~g~~l~~~~~--~~--------~~~~~L~  727 (813)
                      |+|..||.+..         ...+.+.+|+.+.|.|.+.|.| ++.+.|++++..+..+..  +.        ...+.|.
T Consensus         2 L~V~~Pp~i~~---------~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~   72 (115)
T d2crya1           2 LTVNGPPIISS---------TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLT   72 (115)
T ss_dssp             CCCCSSCCEEE---------ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEE
T ss_pred             eEEecCCEEec---------CCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEE
Confidence            45666665432         1225678999999999999865 558999999998876531  11        1124799


Q ss_pred             ECCCCCCC-CEEEEEEEEcCCCceEEEEEEEEEcCC
Q psy14896        728 IPNVKVED-QGEYICRASNDRSALESSVTISIQAEP  762 (813)
Q Consensus       728 i~~v~~~d-~G~Y~C~a~N~~G~~~~~~~l~V~~~P  762 (813)
                      |.++..+| +|.|+|.|+|.+|++++.+.|.|+.++
T Consensus        73 I~~v~~~D~~G~Y~C~A~N~~G~~~~~~~L~V~~~~  108 (115)
T d2crya1          73 ISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSE  108 (115)
T ss_dssp             CTTCCHHHHHSCEEEEEECSSCEEEEEECCCCSCSS
T ss_pred             EeccchhcCCeEEEEEEEECCCeEEEEEEEEEECCC
Confidence            99999999 799999999999999999999998654

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.36  E-value=7.7e-13  Score=110.00  Aligned_cols=94  Identities=21%  Similarity=0.299  Sum_probs=64.7

Q ss_pred             CCCceeeC-CCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEE-------e----eC
Q psy14896        188 RGPYFIKQ-PTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFT-------L----SG  255 (813)
Q Consensus       188 ~~P~~~~~-p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~-------~----~~  255 (813)
                      .+|.|... |++..+.+|     ++++|.|.+.|.|.|.|.|+|++.......    .........       .    ..
T Consensus         3 ~~P~i~~~~P~~~tv~~G-----~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~   73 (109)
T d2fdbp2           3 HRPILQAGLPANASTVVG-----GDVEFVCKVYSDAQPHIQWIKHVEKNGSKY----GPDGLPYLKVLKAAGVNTTDKEI   73 (109)
T ss_dssp             SCCEECTTCSCCEEECTT-----CCEEEEEEEECSSCCEEEEEEEC-----------------CEEEECCEEEEETTEEE
T ss_pred             CCCEEcCCCCCCEEEecC-----CcEEEEEEEEEcCCCeEEEEecCccCCcee----ccCCceeEeecccceeEEecCCc
Confidence            35777765 788998887     679999999999999999999876432111    000000001       0    12


Q ss_pred             CeEEEcCCccccCCeeEEEEeecCceeeEeeeeEEee
Q psy14896        256 GNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAF  292 (813)
Q Consensus       256 ~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v  292 (813)
                      +.|.|.+. +.+|+|.|+|.|.|..|.+ +.++.|.|
T Consensus        74 ~~L~i~~~-~~~D~G~Y~C~a~N~~G~~-~~~~~L~V  108 (109)
T d2fdbp2          74 EVLYIRNV-TFEDAGEYTCLAGNSIGIS-FHSAWLTV  108 (109)
T ss_dssp             EEEEECSC-CGGGCEEEEEEEECSSCEE-EEEEEEEE
T ss_pred             EEEEECCC-CHHHCeEEEEEEEECCCEE-EEEEEEEE
Confidence            45777775 8999999999999999988 56777776

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.35  E-value=6.4e-13  Score=108.88  Aligned_cols=84  Identities=35%  Similarity=0.717  Sum_probs=67.6

Q ss_pred             cccccccC-CCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeE-EEeeCccEEEEeecccCCeeEEEEEEe
Q psy14896        568 IGEFNLKR-APEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRV-FVSYDGALYFSALEQIDAGNYSCNVQS  645 (813)
Q Consensus       568 ~p~~~~~~-~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~a~n  645 (813)
                      .+.|.... .+..+.+|+.+.|.|.+..+.|.+.|+|+|+|.++....+.+. ....+++|.|.+++.+|+|.|+|.|.|
T Consensus         3 l~~F~~~~~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   82 (105)
T d1cs6a2           3 LQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATS   82 (105)
T ss_dssp             ECCCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEE
T ss_pred             CCcccCCCCCCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEE
Confidence            34454433 4567899999999999867899999999999987665555544 445678899999999999999999999


Q ss_pred             eecCcc
Q psy14896        646 KVSDTG  651 (813)
Q Consensus       646 ~~g~~~  651 (813)
                      ..|...
T Consensus        83 ~~g~~~   88 (105)
T d1cs6a2          83 HIDFIT   88 (105)
T ss_dssp             EETTEE
T ss_pred             CCCCEE
Confidence            998754

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1e-12  Score=108.28  Aligned_cols=95  Identities=24%  Similarity=0.381  Sum_probs=70.0

Q ss_pred             ceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeeccccccccccc--ccccCCCccEEeeCCeEEEcCCccccC
Q psy14896        191 YFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVAN--LIDPLSDKRFTLSGGNLIINDPRQVED  268 (813)
Q Consensus       191 ~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~~d  268 (813)
                      .+...+.++.+.+|     +++.|.|.+.|.|.|.|.|+|++..+......  ........+....+++|.|.+. +.+|
T Consensus         6 ~V~~~~~~v~v~~g-----~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D   79 (105)
T d1nbqa1           6 TVHSSEPEVRIPEN-----NPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSV-TRED   79 (105)
T ss_dssp             EEECSCSBCCEETT-----CCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCC-CTTS
T ss_pred             EEECCCCeEEEeCC-----CeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecc-cccc
Confidence            34444556667666     77999999999999999999998876433322  2223344555666788988886 8999


Q ss_pred             CeeEEEEeecCceeeEeeeeEEee
Q psy14896        269 RGSYHCKASNKFGSIISESVQLAF  292 (813)
Q Consensus       269 ~G~Y~C~a~n~~g~~~s~~~~l~v  292 (813)
                      +|.|+|.|.|..|.+ ...+.|+|
T Consensus        80 ~G~Y~C~a~n~~G~~-~~~~~v~v  102 (105)
T d1nbqa1          80 TGTYTCMVSEEGGNS-YGEVKVKL  102 (105)
T ss_dssp             CSEEEEEEEETTSSC-EECCEEEC
T ss_pred             eeeEEEEEEECCCCE-EEEEEEEE
Confidence            999999999999987 44555554

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=9.5e-13  Score=108.08  Aligned_cols=78  Identities=18%  Similarity=0.276  Sum_probs=58.5

Q ss_pred             ccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe--e----CCeEEEcCCccccCCeeEEEEeecCceee
Q psy14896        210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL--S----GGNLIINDPRQVEDRGSYHCKASNKFGSI  283 (813)
Q Consensus       210 ~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~--~----~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~  283 (813)
                      ....|.|.+.|+|.|+|+|||||++|....        ..+...  .    .+.|.|.+. +.+|+|.|+|.|+|..|.+
T Consensus        18 ~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~--------~~~~~~~~~~~~~~~~L~i~~~-~~~D~G~Y~C~a~N~~G~~   88 (105)
T d1wwca_          18 LEHCIEFVVRGNPPPTLHWLHNGQPLRESK--------IIHVEYYQEGEISEGCLLFNKP-THYNNGNYTLIAKNPLGTA   88 (105)
T ss_dssp             CEEEEEEEEECSSCCEEEEEETTEECCCSS--------SEEEEEEECSSEEEEEEEEESC-CGGGCEEEEEEEEETTEEE
T ss_pred             EEEEEEEEEEEeCCCeEEEEeCccccCCCc--------ceeeeEEeecccceEEEEEeec-ccccceEEEEEEEcCCCEE
Confidence            447789999999999999999998774321        111111  1    235777775 8999999999999999988


Q ss_pred             EeeeeEEeeeeecc
Q psy14896        284 ISESVQLAFGFIGE  297 (813)
Q Consensus       284 ~s~~~~l~v~~~~~  297 (813)
                       +.++.|.|..+|.
T Consensus        89 -~~~~~v~V~~~P~  101 (105)
T d1wwca_          89 -NQTINGHFLKEPF  101 (105)
T ss_dssp             -EEEEEECCSCCCC
T ss_pred             -EEEEEEEEEeCCC
Confidence             7778888765543

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=7.7e-13  Score=110.52  Aligned_cols=92  Identities=22%  Similarity=0.288  Sum_probs=68.7

Q ss_pred             ceeeCCCceeecCCCccccccEEEEeeeccCC---CCeEEEeecccccccccccccccCCCccEEe----------eCCe
Q psy14896        191 YFIKQPTDVVFDLSKRSILNDITLSCYAGGYP---NPSYEWFKEDYVQDRLVANLIDPLSDKRFTL----------SGGN  257 (813)
Q Consensus       191 ~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P---~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~----------~~~~  257 (813)
                      .|+..|.++.+.+|     ++++|.|++.|.|   .|.|.|||++......       ....++..          ...+
T Consensus         2 ~F~~~P~~~~v~~G-----~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~   69 (113)
T d2dava1           2 LFIEKPQGGTVKVG-----EDITFIAKVKAEDLLRKPTIKWFKGKWMDLAS-------KAGKHLQLKETFERHSRVYTFE   69 (113)
T ss_dssp             SCCSCCCCCEEETT-----CCEEEEEEEECCCSSSCCEEEEEESSSCCHHH-------HTTSSEEEEEEEETTTTEEEEE
T ss_pred             EEeECCceEEEeCC-----CEEEEEEEEccCCCCCCCEEEEEEeecccccc-------ccceeeeeccceeeEeecCEEE
Confidence            47788999999888     6699999999988   6899999998543211       11112211          1124


Q ss_pred             EEEcCCccccCCeeEEEEeecCceeeEeeeeEEeeeeec
Q psy14896        258 LIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIG  296 (813)
Q Consensus       258 l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~  296 (813)
                      |.|.+. +.+|+|.|+|.|+|..|.. +..+.|.|..++
T Consensus        70 L~I~~v-~~~D~G~Y~C~a~N~~G~~-~~~~~L~V~~~~  106 (113)
T d2dava1          70 MQIIKA-KDNFAGNYRCEVTYKDKFD-SCSFDLEVHEST  106 (113)
T ss_dssp             EEECSC-CTTSCEEEEEEEECSSCEE-EECCEEEEECCC
T ss_pred             EEEccC-CHHHCeEEEEEEEeCCCEE-EEEEEEEEEcCC
Confidence            777775 8999999999999999987 778888886544

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.35  E-value=2.7e-12  Score=103.57  Aligned_cols=87  Identities=16%  Similarity=0.345  Sum_probs=62.4

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccCCC-CeEEEeecc-cccccccccccccCCCccEEe---e--CCeEEEcCCc
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPN-PSYEWFKED-YVQDRLVANLIDPLSDKRFTL---S--GGNLIINDPR  264 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~-p~v~W~k~g-~~l~~~~~~~~~~~~~~~~~~---~--~~~l~i~~~~  264 (813)
                      +...|.+..+.+|     +++.|.|.+.|.|. |.|.|||++ ..+.         ....++..   .  ..+|.|.+. 
T Consensus         3 V~i~P~~~~v~~G-----~~~~l~C~v~g~p~~~~v~W~~~~g~~~~---------~~~~~~~~~~~~~~~~~L~I~~~-   67 (97)
T d1epfa1           3 VDIVPSQGEISVG-----ESKFFLCQVAGDAKDKDISWFSPNGEKLS---------PNQQRISVVWNDDDSSTLTIYNA-   67 (97)
T ss_dssp             EEEESSSEEEETT-----CCEEEEEEECCCSCCCEEEEECTTSCEEC---------CBSSSEEEEEEETTEEEEEECSC-
T ss_pred             EEEECCCEEEccC-----CcEEEEEEEEeccCCCEEEEEEeeeeeee---------eccccEEEEeecCcceEEEcccC-
Confidence            3445677777777     77999999999885 799999955 3331         12222222   1  245788775 


Q ss_pred             cccCCeeEEEEeecCceeeEeeeeEEeee
Q psy14896        265 QVEDRGSYHCKASNKFGSIISESVQLAFG  293 (813)
Q Consensus       265 ~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~  293 (813)
                      +.+|+|.|+|.|+|..|...+.++.|+|.
T Consensus        68 ~~~D~G~Y~C~a~N~~G~~~~~tv~l~V~   96 (97)
T d1epfa1          68 NIDDAGIYKCVVTAEDGTQSEATVNVKIF   96 (97)
T ss_dssp             CGGGCEEEEEEEEETTTEEEEEEEEEEEE
T ss_pred             chhhceEEEEEEEeCCCcEEEEEEEEEEE
Confidence            89999999999999999765667777763

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=1.9e-12  Score=107.64  Aligned_cols=85  Identities=28%  Similarity=0.507  Sum_probs=59.8

Q ss_pred             cccEEEEeeec-cCCCCeEEEeecccccccccccccccCCCccEEe--eCCeEEEcCCccccCCeeEEEEeecCceeeE-
Q psy14896        209 LNDITLSCYAG-GYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL--SGGNLIINDPRQVEDRGSYHCKASNKFGSII-  284 (813)
Q Consensus       209 g~~v~l~C~~~-g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~-  284 (813)
                      |++++|.|.+. |.|.+.|+|+|+|.++..................  ..+.|.|.+. +.+|+|.|+|.|+|..|.+. 
T Consensus        17 G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v-~~~D~G~Y~C~a~N~~G~~~~   95 (110)
T d1f97a2          17 GNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPV-TAFDSGEYYCQAQNGYGTAMR   95 (110)
T ss_dssp             TSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSC-CGGGCEEEEEEEECSSSCCEE
T ss_pred             CCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCC-CccCCEEEEEEEEECCCcEEE
Confidence            47799999985 8999999999999887554433333333333333  2456888875 89999999999999999763 


Q ss_pred             eeeeEEeeee
Q psy14896        285 SESVQLAFGF  294 (813)
Q Consensus       285 s~~~~l~v~~  294 (813)
                      +..++|.|..
T Consensus        96 s~~v~l~V~~  105 (110)
T d1f97a2          96 SEAAHMDAVE  105 (110)
T ss_dssp             CCCEEEEEES
T ss_pred             EEEEEEEEEe
Confidence            4456776643

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.34  E-value=7.7e-14  Score=110.31  Aligned_cols=78  Identities=21%  Similarity=0.331  Sum_probs=64.0

Q ss_pred             CCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceee----ecceEEEECCCCCCCCEEEEEEEEcCCCceEEE
Q psy14896        678 KTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----NFNRILTIPNVKVEDQGEYICRASNDRSALESS  753 (813)
Q Consensus       678 ~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~  753 (813)
                      ++.+..+.+|+++.|.|.+ +.|.|.++|+|||.+|..+.++.    +...+|.|.+++.+|+|.|+|.|.|..    .+
T Consensus         7 ~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~----~s   81 (89)
T d1tiua_           7 PLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAK----SA   81 (89)
T ss_dssp             CCCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCB----CC
T ss_pred             CCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceE----EE
Confidence            3445788999999999998 57999999999999998776542    345689999999999999999998754    45


Q ss_pred             EEEEEEc
Q psy14896        754 VTISIQA  760 (813)
Q Consensus       754 ~~l~V~~  760 (813)
                      +.|.|++
T Consensus        82 a~l~V~e   88 (89)
T d1tiua_          82 ANLKVKE   88 (89)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEE
Confidence            6777753

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=5.9e-13  Score=108.93  Aligned_cols=78  Identities=19%  Similarity=0.343  Sum_probs=62.8

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCC------------ceeeecceEEEECCCCCCCCEEEEEEEEcCCCc
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRN------------AYFENFNRILTIPNVKVEDQGEYICRASNDRSA  749 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~------------~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~  749 (813)
                      ..+.+|++++|.|.+.|.|.|.|.|+|++..+...            .+....+++|+|.+++.+|+|.|+|.|.|..|.
T Consensus        11 v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~C~a~n~~g~   90 (102)
T d1f97a1          11 VQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQ   90 (102)
T ss_dssp             EEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEEEEEETTSS
T ss_pred             EEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEEEEEEECCCC
Confidence            56789999999999999999999999976543221            112233567999999999999999999999999


Q ss_pred             eEEEEEEEEE
Q psy14896        750 LESSVTISIQ  759 (813)
Q Consensus       750 ~~~~~~l~V~  759 (813)
                      ....+.|.|.
T Consensus        91 ~~~~~~v~v~  100 (102)
T d1f97a1          91 NYGEVSIHLT  100 (102)
T ss_dssp             SEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            8777666654

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.34  E-value=1.8e-12  Score=106.11  Aligned_cols=85  Identities=36%  Similarity=0.763  Sum_probs=69.2

Q ss_pred             eecccccCC-CCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCccEE-EccCccEEEeeeeecCCeeeEEEEe
Q psy14896        294 FIGEFNLKR-APEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVF-VSYDGALYFSALEQIDAGNYSCNVQ  371 (813)
Q Consensus       294 ~~~~~~~~~-~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~a~  371 (813)
                      +.++|...+ .+..+.+|+.+.|.|.+..+.|.++|+|+|||.++......+.. ...+++|.|.+++.+|+|.|+|.|.
T Consensus         2 ~l~~F~~~~~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   81 (105)
T d1cs6a2           2 FLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFAT   81 (105)
T ss_dssp             EECCCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEE
T ss_pred             cCCcccCCCCCCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEE
Confidence            345566554 45789999999999997789999999999999987665555544 4457799999999999999999999


Q ss_pred             eeccccC
Q psy14896        372 SKVSDTG  378 (813)
Q Consensus       372 n~~g~~~  378 (813)
                      |..|...
T Consensus        82 N~~g~~~   88 (105)
T d1cs6a2          82 SHIDFIT   88 (105)
T ss_dssp             EEETTEE
T ss_pred             ECCCCEE
Confidence            9987543

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.2e-12  Score=106.74  Aligned_cols=86  Identities=17%  Similarity=0.254  Sum_probs=60.5

Q ss_pred             cccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeeee
Q psy14896        209 LNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESV  288 (813)
Q Consensus       209 g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~  288 (813)
                      ++.+.|.|.+.|+|.|+|.|+|||..|.......+..... ......+.|.|.+. +.+|+|.|+|.|+|..|.+ +.++
T Consensus        16 ~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~-~~~~~~~~L~i~~~-~~~D~G~Y~C~a~N~~G~~-~~~~   92 (103)
T d1wwbx_          16 DHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVT-NHTEYHGCLQLDNP-THMNNGDYTLIAKNEYGKD-EKQI   92 (103)
T ss_dssp             CCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEE-CSSEEEEEEEEESC-CGGGCEEEEEEEECSSCEE-EEEE
T ss_pred             ceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeeccc-ccccceEEEEECCC-CHHhCceEEEEEeccCCEE-EEEE
Confidence            3668899999999999999999998874321110000000 00001235777775 8999999999999999998 7788


Q ss_pred             EEeeeeecc
Q psy14896        289 QLAFGFIGE  297 (813)
Q Consensus       289 ~l~v~~~~~  297 (813)
                      .|.|...|.
T Consensus        93 ~v~V~~~P~  101 (103)
T d1wwbx_          93 SAHFMGWPG  101 (103)
T ss_dssp             EECCSCCCC
T ss_pred             EEEEEeCCC
Confidence            888866654

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=3.8e-12  Score=104.00  Aligned_cols=96  Identities=23%  Similarity=0.362  Sum_probs=70.2

Q ss_pred             CceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccc--cccccCCCccEEeeCCeEEEcCCcccc
Q psy14896        190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVA--NLIDPLSDKRFTLSGGNLIINDPRQVE  267 (813)
Q Consensus       190 P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~~  267 (813)
                      |.+...+.++.+.+|     +++.|.|.+.|.|.|.|.|+|++..+.....  .........+....+++|.|.+. +.+
T Consensus         2 ~sV~t~~~~v~v~~G-----~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v-~~~   75 (102)
T d1f97a1           2 GSVYTAQSDVQVPEN-----ESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSV-TRK   75 (102)
T ss_dssp             CEEECSCSEEEEETT-----CCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCC-CGG
T ss_pred             CCEEccCCcEEEeCC-----CEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeEC-Ccc
Confidence            344555667777777     7799999999999999999998876533221  12223334556667889999986 899


Q ss_pred             CCeeEEEEeecCceeeEeeeeEEee
Q psy14896        268 DRGSYHCKASNKFGSIISESVQLAF  292 (813)
Q Consensus       268 d~G~Y~C~a~n~~g~~~s~~~~l~v  292 (813)
                      |+|.|+|.|+|..|.. ...+.|+|
T Consensus        76 D~G~Y~C~a~n~~g~~-~~~~~v~v   99 (102)
T d1f97a1          76 DNGEYTCMVSEEGGQN-YGEVSIHL   99 (102)
T ss_dssp             GCEEEEEEEEETTSSS-EEEEEEEE
T ss_pred             CCEEEEEEEEECCCCE-EEEEEEEE
Confidence            9999999999999986 34444444

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.2e-12  Score=107.54  Aligned_cols=83  Identities=25%  Similarity=0.489  Sum_probs=57.1

Q ss_pred             cccEEEEeee-ccCCCCeEEEeecccccccccccccccCCCc-cEEeeCCeEEEcCCccccCCeeEEEEeecCceeeE-e
Q psy14896        209 LNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDK-RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSII-S  285 (813)
Q Consensus       209 g~~v~l~C~~-~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~-s  285 (813)
                      |++++|.|.+ .|+|.|.+.|+|+|..+.............. ......+.|.|.+. +.+|+|.|+|.|+|..|... +
T Consensus        17 G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v-~~~D~G~Y~C~a~N~~G~~~~s   95 (104)
T d1nbqa2          17 GNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPL-SASDTGEYSCEARNGYGTPMTS   95 (104)
T ss_dssp             TSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSC-CGGGCCCEEEEEECSSSCCEEC
T ss_pred             CCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCC-CcccCcEEEEEEEECCCceEEE
Confidence            3779999998 5899999999999988754332222111111 11123556788775 89999999999999999863 3


Q ss_pred             eeeEEee
Q psy14896        286 ESVQLAF  292 (813)
Q Consensus       286 ~~~~l~v  292 (813)
                      ..++|.|
T Consensus        96 ~~v~v~v  102 (104)
T d1nbqa2          96 NAVRMEA  102 (104)
T ss_dssp             CCBCCEE
T ss_pred             EEEEEEE
Confidence            3344443

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=7.8e-13  Score=107.43  Aligned_cols=83  Identities=16%  Similarity=0.168  Sum_probs=67.9

Q ss_pred             cCCCCCCeEEEEEEecC-CCCC--eEEEEeCCcccCCCceee-ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFG-YPVP--SYNWTRRGSPLPRNAYFE-NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS  757 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g-~P~p--~i~W~k~g~~l~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~  757 (813)
                      ..+.+|+.++|+|.+.| .|.|  .++|+|++..|....... ...++|+|..+..+|+|.|+|+|+|.+|+...++.+.
T Consensus        14 ~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~~~~~~s~l~i~~~~~dd~g~ytC~A~n~~g~~~~~~~~~   93 (103)
T d1iama1          14 SWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQGLELFEN   93 (103)
T ss_dssp             SEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEE
T ss_pred             ceEeCCCEEEEEEEecCCCCCCceEEEEccccccccccccccccceEEEEEeeehhHCCCEEEEEEEeCCCCccCeEeee
Confidence            45788999999999996 5655  688999999886543322 2346799999999999999999999999998888888


Q ss_pred             EEcCCcc
Q psy14896        758 IQAEPNF  764 (813)
Q Consensus       758 V~~~P~~  764 (813)
                      +..|+.+
T Consensus        94 ~s~p~~L  100 (103)
T d1iama1          94 TSAPYQL  100 (103)
T ss_dssp             ECCCEEC
T ss_pred             EcCCCEE
Confidence            8877654

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=4.1e-12  Score=109.57  Aligned_cols=93  Identities=18%  Similarity=0.265  Sum_probs=64.9

Q ss_pred             eCCCceeecCCCccccccEEEEeeeccCCCCeEEEeeccccccccccccc-------------------ccCCCccEEe-
Q psy14896        194 KQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLI-------------------DPLSDKRFTL-  253 (813)
Q Consensus       194 ~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~-------------------~~~~~~~~~~-  253 (813)
                      ..|..+.+.+|     ++++|.|.+.|.|.|.|.|+|++..+........                   ......++.+ 
T Consensus        14 ~~~~~v~v~~G-----~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~   88 (130)
T d1gxea_          14 RIPDTIVVVAG-----NKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVE   88 (130)
T ss_dssp             CCCCEEEESSS-----SCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEE
T ss_pred             CCCCCEEEEcC-----CeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEE
Confidence            34667788777     7799999999999999999999887643221100                   0011112222 


Q ss_pred             -eC--CeEEEcCCccccCCeeEEEEeecCceeeEeeeeEEeee
Q psy14896        254 -SG--GNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFG  293 (813)
Q Consensus       254 -~~--~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~  293 (813)
                       ..  .+|.|.+. +.+|+|.|+|.|+|..|.. +..+.|.|.
T Consensus        89 ~~~~~~~L~I~~v-~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~  129 (130)
T d1gxea_          89 TTKDRSIFTVEGA-EKEDEGVYTVTVKNPVGED-QVNLTVKVI  129 (130)
T ss_dssp             EETTEEEEECSCC-CTTTCEEEEEEEECSSCEE-EEEEEEEEC
T ss_pred             ECCCEEEEEECcC-ChhcCEEEEEEEEECCCEE-EEEEEEEEE
Confidence             22  24666664 8999999999999999987 667777763

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=9.3e-12  Score=100.49  Aligned_cols=86  Identities=17%  Similarity=0.220  Sum_probs=67.1

Q ss_pred             CCceeecCCCccccccEEEEeeec-cCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEE
Q psy14896        196 PTDVVFDLSKRSILNDITLSCYAG-GYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHC  274 (813)
Q Consensus       196 p~~~~v~~g~~~~g~~v~l~C~~~-g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C  274 (813)
                      |..++..+|     +.+.|.|.+. +.|.+.|.|||+|..+.      .......++...+++|.|.+. +.+|+|.|+|
T Consensus         9 ~~~~~~~~~-----e~~~l~C~~~~~~~~~~i~W~k~~~~~~------~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C   76 (101)
T d1iray1           9 KIILVSSAN-----EIDVRPCPLNPNEHKGTITWYKDDSKTP------VSTEQASRIHQHKEKLWFVPA-KVEDSGHYYC   76 (101)
T ss_dssp             CCCEEEETT-----SCEEECCCCCGGGCSSEEEEECSSTTSB------CCCCTTSSEEEETTEEEETTC-CGGGCEEEEE
T ss_pred             CcEEEEeCC-----CeEEEEeeCCCCCCCceEEEEECCcccc------cccccceEEeccCCEEEeccc-eecCCEEEEE
Confidence            445566555     7799999985 77999999999997652      222344556667889999986 8999999999


Q ss_pred             EeecCceeeEeeeeEEeeee
Q psy14896        275 KASNKFGSIISESVQLAFGF  294 (813)
Q Consensus       275 ~a~n~~g~~~s~~~~l~v~~  294 (813)
                      .|.|..|.. ..++.|.|..
T Consensus        77 ~a~N~~g~~-~~~~~L~V~~   95 (101)
T d1iray1          77 VVRNSSYCL-RIKISAKFVE   95 (101)
T ss_dssp             EEEETTEEE-EEEEEEEEEC
T ss_pred             EEECCCCeE-EEEEEEEEEe
Confidence            999999987 5678888754

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.3e-12  Score=105.80  Aligned_cols=96  Identities=23%  Similarity=0.298  Sum_probs=62.4

Q ss_pred             CceeecCCCccccccEEEEeeeccCCCCeEEEeeccccccccccccccc-CCCccEEeeCCeEEEcCCccccCCeeEEEE
Q psy14896        197 TDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDP-LSDKRFTLSGGNLIINDPRQVEDRGSYHCK  275 (813)
Q Consensus       197 ~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~  275 (813)
                      .++.+.+|  .+++...|.|.+.|.|.|.|+|+|||++|.......... ............|.|.+. +.+|+|.|+|.
T Consensus         5 ~~~~~~~g--~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-~~~D~G~Y~C~   81 (107)
T d1he7a_           5 ASVQLHTA--VEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQP-THVNNGNYTLL   81 (107)
T ss_dssp             CCCCCCCC--CCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESC-CGGGCEEEEEE
T ss_pred             CEeEECCC--eEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcc-cHHHCcEEEEE
Confidence            34444344  233445566799999999999999999874322111110 000001111234777775 89999999999


Q ss_pred             eecCceeeEeeeeEEeeeeec
Q psy14896        276 ASNKFGSIISESVQLAFGFIG  296 (813)
Q Consensus       276 a~n~~g~~~s~~~~l~v~~~~  296 (813)
                      |+|..|.+ +.++.|.|..+|
T Consensus        82 A~N~~G~~-~~~i~v~v~~~P  101 (107)
T d1he7a_          82 AANPFGQA-SASIMAAFMDNP  101 (107)
T ss_dssp             EEETTEEE-EEEEEECCCSCT
T ss_pred             EEeCCCEE-EEEEEEEEEcCC
Confidence            99999987 777888876655

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.27  E-value=6.5e-12  Score=97.71  Aligned_cols=79  Identities=23%  Similarity=0.402  Sum_probs=62.6

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCC-eEEEeecccccccccccccccCCCccEEeeCCeEEEcCCcccc
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE  267 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p-~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~  267 (813)
                      +|.++.+|....+.+|     ++++|+|.+.|.|.+ .+.|||||..+.                ..+.+|.|.+. +.+
T Consensus         5 kpvi~~~P~~~~v~~G-----~~vtL~C~~~~~~~~~~~~~~~~~~~~~----------------~~~~~l~i~~~-~~~   62 (84)
T d1fnla1           5 KAVVFLEPQWYSVLEK-----DSVTLKCQGAYSPEDNSTQWFHNESLIS----------------SQASSYFIDAA-TVN   62 (84)
T ss_dssp             CCEEEEESCCSEEETT-----CCEEEEEECCCBTTBCCCEEEETTEEEE----------------SSCSEEEESSC-CGG
T ss_pred             CCEEEECCCCcEEeCC-----CeEEEEEEeccCCCCeEEEEeeeceeee----------------ecceeeEecCC-ccc
Confidence            5889999998888887     779999999998888 467788886441                12456888885 899


Q ss_pred             CCeeEEEEeecCceeeEeeeeEEee
Q psy14896        268 DRGSYHCKASNKFGSIISESVQLAF  292 (813)
Q Consensus       268 d~G~Y~C~a~n~~g~~~s~~~~l~v  292 (813)
                      |+|.|+|+|.|..+   |..+.|+|
T Consensus        63 d~G~Y~C~a~~s~~---S~~v~L~V   84 (84)
T d1fnla1          63 DSGEYRCQTNLSTL---SDPVQLEV   84 (84)
T ss_dssp             GCEEEEEECSSSCC---CCCEEEEE
T ss_pred             CCEEEEEEccCCCc---cccEEEEC
Confidence            99999999988654   66777765

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=4.2e-12  Score=98.30  Aligned_cols=80  Identities=24%  Similarity=0.387  Sum_probs=60.7

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCC-eEEEeecccccccccccccccCCCccEEeeCCeEEEcCCcccc
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE  267 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p-~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~  267 (813)
                      +|.|+.+|....+.+|     ++++|.|.+.|+|.+ .+.|||+|..+.                ..+.+|.|.+. +.+
T Consensus         1 KP~It~~P~~~~v~~G-----~~v~L~C~~~~~~~~~~~~~~~~~~~~~----------------~~~~~l~i~~v-~~~   58 (82)
T d1f2qa1           1 KPKVSLNPPWNRIFKG-----ENVTLTCNGNNFFEVSSTKWFHNGSLSE----------------ETNSSLNIVNA-KFE   58 (82)
T ss_dssp             CCCCEEESSCSEEETT-----CCEEEECCTTCC----CCEEEETTEECS----------------CCSSEEEECSC-CGG
T ss_pred             CCEEEEcCCCeEEeCC-----CeEEEEEEEeeeeeecceeeeeeeeeee----------------cccceeEECCC-Chh
Confidence            4788889988888787     779999999998887 577788886541                12456888875 899


Q ss_pred             CCeeEEEEeecCceeeEeeeeEEeee
Q psy14896        268 DRGSYHCKASNKFGSIISESVQLAFG  293 (813)
Q Consensus       268 d~G~Y~C~a~n~~g~~~s~~~~l~v~  293 (813)
                      |+|.|+|+|.|..+   |..+.|.|.
T Consensus        59 d~G~Y~C~a~~s~~---S~~v~l~V~   81 (82)
T d1f2qa1          59 DSGEYKCQHQQVNE---SEPVYLEVF   81 (82)
T ss_dssp             GCEEEEEECTTSSC---CCCEEEEEE
T ss_pred             hCCcEEEEecCCCC---cccEEEEEE
Confidence            99999999998655   667777763

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.2e-11  Score=98.79  Aligned_cols=85  Identities=19%  Similarity=0.247  Sum_probs=59.7

Q ss_pred             CCceeeCCCc-eeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCC--eEEEcCCcc
Q psy14896        189 GPYFIKQPTD-VVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGG--NLIINDPRQ  265 (813)
Q Consensus       189 ~P~~~~~p~~-~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~  265 (813)
                      +|.|...+.. ..+.+|     +++.|.|.+.+ |.|.|+|||||.+|...       .....+...++  +|.|.+. +
T Consensus         5 ~~~f~~~l~~~~~v~~G-----~~v~l~c~v~~-p~~~v~W~k~g~~i~~~-------~~~~~~~~~~~~~~L~I~~~-~   70 (94)
T d1pd6a_           5 STAFQKKLEPAYQVSKG-----HKIRLTVELAD-HDAEVKWLKNGQEIQMS-------GSKYIFESIGAKRTLTISQC-S   70 (94)
T ss_dssp             TSSCSEECCSEEEEETT-----SCEEEEEECSS-SSSCCEEEESSSEECCC-------SSSSEEEEETTEEEEEECSC-S
T ss_pred             CCcEEEeCCCCEEECcC-----CeEEEEEEECC-CCceEEEEEcCccceee-------eeeEeeeccCCeEEeecCCC-C
Confidence            5778887654 467676     77999999965 99999999999877321       11112222333  4777775 8


Q ss_pred             ccCCeeEEEEeecCceeeEeeeeEEee
Q psy14896        266 VEDRGSYHCKASNKFGSIISESVQLAF  292 (813)
Q Consensus       266 ~~d~G~Y~C~a~n~~g~~~s~~~~l~v  292 (813)
                      .+|+|.|+|.|.|..+     ++.|.|
T Consensus        71 ~~D~G~Y~c~a~n~~~-----s~~l~V   92 (94)
T d1pd6a_          71 LADDAAYQCVVGGEKC-----STELFV   92 (94)
T ss_dssp             SSSCEEEEEEETTEEE-----CCEEEE
T ss_pred             ceecEEEEEEEeeEEE-----EEEEEE
Confidence            9999999999988533     445555

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.24  E-value=4.2e-12  Score=99.16  Aligned_cols=70  Identities=21%  Similarity=0.364  Sum_probs=58.7

Q ss_pred             cCCCCCCeEEEEEEecCCCCC-eEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVP-SYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ  759 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p-~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  759 (813)
                      ..+.+|++++|.|.+.+.|.+ .+.|+|||..+...      ...|.|.+++.+|+|.|+|+|.|..+++.  +.|+|.
T Consensus        14 ~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~------~~~l~i~~v~~~dsG~Y~C~a~ns~~S~~--v~l~V~   84 (85)
T d2fcba1          14 INVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTH------TQPSYRFKANNNDSGEYTCQTGQTSLSDP--VHLTVL   84 (85)
T ss_dssp             SEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTC------CSSEEEEECCGGGCEEEEEECTTSBCCCC--EEEEEE
T ss_pred             eEEcCCCeEEEEEEEeeccceeEEEeeccccccccc------ccceEEeeccccCCcEEEEECCCCccccc--EEEEEE
Confidence            567899999999999999876 69999999988654      46799999999999999999999866554  455553

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.23  E-value=5.4e-12  Score=98.53  Aligned_cols=80  Identities=19%  Similarity=0.306  Sum_probs=63.9

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCC-eEEEeecccccccccccccccCCCccEEeeCCeEEEcCCcccc
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE  267 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p-~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~  267 (813)
                      +|.++.+|....+.+|     ++++|.|.+.+.|.+ .+.|||||..+..                .++.|.|.+. +.+
T Consensus         4 kp~i~~~P~~~~v~~G-----~~v~L~C~~~~~~~~~~~~w~~~g~~~~~----------------~~~~l~i~~v-~~~   61 (85)
T d2fcba1           4 KAVLKLEPQWINVLQE-----DSVTLTCRGTHSPESDSIQWFHNGNLIPT----------------HTQPSYRFKA-NNN   61 (85)
T ss_dssp             BCEEEEESCCSEEETT-----CEEEEEEECSSCCCTTCCEEEETTEECTT----------------CCSSEEEEEC-CGG
T ss_pred             CCEEEECCCCeEEcCC-----CeEEEEEEEeeccceeEEEeecccccccc----------------cccceEEeec-ccc
Confidence            4778888988888887     679999999998876 6999999976521                1456788775 899


Q ss_pred             CCeeEEEEeecCceeeEeeeeEEeee
Q psy14896        268 DRGSYHCKASNKFGSIISESVQLAFG  293 (813)
Q Consensus       268 d~G~Y~C~a~n~~g~~~s~~~~l~v~  293 (813)
                      |+|.|+|+|.|..+   |..+.|.|.
T Consensus        62 dsG~Y~C~a~ns~~---S~~v~l~V~   84 (85)
T d2fcba1          62 DSGEYTCQTGQTSL---SDPVHLTVL   84 (85)
T ss_dssp             GCEEEEEECTTSBC---CCCEEEEEE
T ss_pred             CCcEEEEECCCCcc---cccEEEEEE
Confidence            99999999998755   667777763

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.3e-11  Score=99.51  Aligned_cols=63  Identities=25%  Similarity=0.429  Sum_probs=53.1

Q ss_pred             ccEEEEe------eeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCcee
Q psy14896        210 NDITLSC------YAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGS  282 (813)
Q Consensus       210 ~~v~l~C------~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~  282 (813)
                      +...|.|      .+.|+|.|.|.|+|||++|.         ..+.++...+++|.|.+. +.+|+|.|+|.|+|..|.
T Consensus        15 ~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~---------~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~n~~~g   83 (103)
T d1iray2          15 GDGGLVCPYMEFFKNENNELPKLQWYKDCKPLL---------LDNIHFSGVKDRLIVMNV-AEKHRGNYTCHASYTYLG   83 (103)
T ss_dssp             SCEEEECTTGGGGCBTTTBCCCCEEEETTEECC---------CCSSSEEEETTEEEESSC-CGGGCEEEEEEEEEEETT
T ss_pred             CCEEEEcCCccccccCCCCCCEEEEEECCcccc---------CCCcEEEecCCEEEEccc-ccccCcEEEEEEEECcCC
Confidence            6699999      67899999999999998763         345567777889999886 899999999999987753

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.21  E-value=4e-12  Score=104.64  Aligned_cols=78  Identities=28%  Similarity=0.390  Sum_probs=62.6

Q ss_pred             cCCCCCCeEEEEEEe-cCCCCCeEEEEeCCcccCCCce--------eeecceEEEECCCCCCCCE---EEEEEEEcCCCc
Q psy14896        682 EAPKAGDKVRLECVA-FGYPVPSYNWTRRGSPLPRNAY--------FENFNRILTIPNVKVEDQG---EYICRASNDRSA  749 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~-~g~P~p~i~W~k~g~~l~~~~~--------~~~~~~~L~i~~v~~~d~G---~Y~C~a~N~~G~  749 (813)
                      .++.+|++++|.|.+ .|.|.|.+.|+|++..+.....        ....+++|.|.+++.+|+|   .|+|.|.|.+|.
T Consensus        12 ~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g~   91 (111)
T d1biha2          12 KTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVD   91 (111)
T ss_dssp             ECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCS
T ss_pred             ccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeCCCC
Confidence            457899999999997 7999999999999887643321        1234678999999998877   799999999999


Q ss_pred             eEEEEEEEEE
Q psy14896        750 LESSVTISIQ  759 (813)
Q Consensus       750 ~~~~~~l~V~  759 (813)
                      ++..+.+.+.
T Consensus        92 ~~~~~~~~~i  101 (111)
T d1biha2          92 EEVVLVEYEI  101 (111)
T ss_dssp             SCEEEEEEEE
T ss_pred             ceEEEEEEEe
Confidence            8877655544

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1e-11  Score=98.28  Aligned_cols=66  Identities=20%  Similarity=0.208  Sum_probs=52.4

Q ss_pred             ccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceee
Q psy14896        208 ILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI  283 (813)
Q Consensus       208 ~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~  283 (813)
                      +|+++.|.|.+.| |.|.+.|+++|+++..        .........+++|.|.+. +.+|+|.|+|.|.|..|..
T Consensus        11 ~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~--------~~~~~~~~~~~~L~I~~v-~~~DsG~Y~C~A~n~~g~~   76 (92)
T d1olza1          11 HGGTAELKCSQKS-NLARVFWKFQNGVLKA--------ESPKYGLMGRKNLLIFNL-SEGDSGVYQCLSEERVKNK   76 (92)
T ss_dssp             TTSCEEECCCCSC-TTCEEEEEESSSBCCC--------CSSSBCCTTTTCEEECSC-CGGGCEEEEEEEEEECSSS
T ss_pred             CCCEEEEEEEeec-cCCceeeecCccccee--------eeeeeecceeeEEEECCC-CHHHCcEEEEEEEEcCCCE
Confidence            3477999999999 7789999999987632        222333345788999986 8999999999999988754

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=6e-12  Score=97.39  Aligned_cols=70  Identities=29%  Similarity=0.426  Sum_probs=55.3

Q ss_pred             cCCCCCCeEEEEEEecCCCCC-eEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVP-SYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ  759 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p-~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  759 (813)
                      ..+.+|++++|.|.+.|.|.| .+.|+|+|..+...      +..|.|.+++.+|+|.|+|.|.|..+++  .+.|.|.
T Consensus        11 ~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~------~~~l~i~~v~~~d~G~Y~C~a~~s~~S~--~v~l~V~   81 (82)
T d1f2qa1          11 NRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET------NSSLNIVNAKFEDSGEYKCQHQQVNESE--PVYLEVF   81 (82)
T ss_dssp             SEEETTCCEEEECCTTCC----CCEEEETTEECSCC------SSEEEECSCCGGGCEEEEEECTTSSCCC--CEEEEEE
T ss_pred             eEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeecc------cceeEECCCChhhCCcEEEEecCCCCcc--cEEEEEE
Confidence            567899999999999999987 56778888877643      5679999999999999999999976654  4566664

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.9e-11  Score=96.65  Aligned_cols=82  Identities=21%  Similarity=0.309  Sum_probs=59.4

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe--eCC--eEEEcCCcccc
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL--SGG--NLIINDPRQVE  267 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~--~~~--~l~i~~~~~~~  267 (813)
                      |+..+.++.+.+|     ++++|.|++. .|.|.+.|||||.++..        ....++..  .++  +|.|.+. +.+
T Consensus         3 i~~~l~~~~v~~G-----~~v~l~C~v~-~p~~~v~W~k~~~~~~~--------~~~~~~~~~~~~~~~~L~I~~v-~~~   67 (90)
T d1x44a1           3 VTKQLEDTTAYCG-----ERVELECEVS-EDDANVKWFKNGEEIIP--------GPKSRYRIRVEGKKHILIIEGA-TKA   67 (90)
T ss_dssp             CSBCCCCEEEETT-----EEEEEEEECS-SSSCCCEEEETTEECCC--------STTCSEEEEEETTEEEEEEEEE-CTT
T ss_pred             EEcCCCCEEEeCC-----CcEEEEEEEC-CCCceEEEEEeecccCC--------CCCccEEEEEeCCccEEEECcc-ccc
Confidence            5566788888887     7799999995 59999999999987632        22223332  222  5778775 899


Q ss_pred             CCeeEEEEeecCceeeEeeeeEEeee
Q psy14896        268 DRGSYHCKASNKFGSIISESVQLAFG  293 (813)
Q Consensus       268 d~G~Y~C~a~n~~g~~~s~~~~l~v~  293 (813)
                      |+|.|+|+|.|..+     +++|.|.
T Consensus        68 D~G~Y~C~a~n~~~-----~a~l~V~   88 (90)
T d1x44a1          68 DAAEYSVMTTGGQS-----SAKLSVD   88 (90)
T ss_dssp             TCSEEEEEETTEEE-----EEEEEEE
T ss_pred             cCEEEEEEEecceE-----EEEEEEE
Confidence            99999999998644     3455553

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.19  E-value=7.1e-12  Score=97.48  Aligned_cols=69  Identities=22%  Similarity=0.337  Sum_probs=56.1

Q ss_pred             cCCCCCCeEEEEEEecCCCCCe-EEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPS-YNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI  758 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~-i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  758 (813)
                      ..+.+|++++|.|.+.|.|.+. +.|+|+|..+..+      ..+|.|.+++.+|+|.|+|.|.|..++.  .+.|.|
T Consensus        15 ~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~a~~s~~S~--~v~L~V   84 (84)
T d1fnla1          15 YSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ------ASSYFIDAATVNDSGEYRCQTNLSTLSD--PVQLEV   84 (84)
T ss_dssp             SEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESS------CSEEEESSCCGGGCEEEEEECSSSCCCC--CEEEEE
T ss_pred             cEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeeec------ceeeEecCCcccCCEEEEEEccCCCccc--cEEEEC
Confidence            5688999999999999999884 6678888776543      5689999999999999999999876544  444443

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.18  E-value=6.8e-12  Score=98.87  Aligned_cols=73  Identities=15%  Similarity=0.123  Sum_probs=55.3

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe--eC--CeEEEcCCcccc
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL--SG--GNLIINDPRQVE  267 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~--~~--~~l~i~~~~~~~  267 (813)
                      |...+.++.+.+|     +++.|.|++. .|.|.+.|||||.++..          +.++.+  .+  .+|.|.+. +.+
T Consensus         4 i~~~l~d~~v~~G-----~~~~~~c~vs-~p~~~v~W~k~g~~i~~----------~~~~~~~~~~~~~~L~I~~~-~~~   66 (89)
T d1tiua_           4 VEKPLYGVEVFVG-----ETAHFEIELS-EPDVHGQWKLKGQPLTA----------SPDCEIIEDGKKHILILHNC-QLG   66 (89)
T ss_dssp             CSBCCCCEEEETT-----SCCCEEEBCS-SSSCCCBCCSSSCCCCS----------SSSCEEEECSSCEEEECCSC-CSC
T ss_pred             EEcCCcCEEEeCC-----CcEEEEEEEC-CCCcEEEEEEeeeeccc----------ceeEEEEeeceeEEEEEcCC-Chh
Confidence            5556788998888     6699999985 69999999999987632          223332  22  24677775 899


Q ss_pred             CCeeEEEEeecCce
Q psy14896        268 DRGSYHCKASNKFG  281 (813)
Q Consensus       268 d~G~Y~C~a~n~~g  281 (813)
                      |+|.|+|.|.|..+
T Consensus        67 D~G~Y~c~a~n~~~   80 (89)
T d1tiua_          67 MTGEVSFQAANAKS   80 (89)
T ss_dssp             CCSEECCBCSSCBC
T ss_pred             cCEEEEEEECceEE
Confidence            99999999998654

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=4.8e-11  Score=98.26  Aligned_cols=95  Identities=22%  Similarity=0.233  Sum_probs=62.0

Q ss_pred             CceeeCCCc-eeecCCCccccccEEEEeeeccCCCCeEEEeeccccccccccccc------ccCCCccEEeeCCeEEEcC
Q psy14896        190 PYFIKQPTD-VVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLI------DPLSDKRFTLSGGNLIIND  262 (813)
Q Consensus       190 P~~~~~p~~-~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~------~~~~~~~~~~~~~~l~i~~  262 (813)
                      |.|+..+.. +.+..|     +++.|.|.+.|.|.|.|.|++||..+........      .............+|.|.+
T Consensus         2 P~i~~p~~~~i~v~~G-----~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~   76 (107)
T d1iray3           2 PVIVSPANETMEVDLG-----SQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISE   76 (107)
T ss_dssp             CEEEECCSEEEECCTT-----CCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESS
T ss_pred             CCEEEECCCEEEEeCC-----CEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEee
Confidence            566665443 444445     7799999999999999999999987643221100      0000000001123577777


Q ss_pred             CccccCCee-EEEEeecCceeeEeeeeEEe
Q psy14896        263 PRQVEDRGS-YHCKASNKFGSIISESVQLA  291 (813)
Q Consensus       263 ~~~~~d~G~-Y~C~a~n~~g~~~s~~~~l~  291 (813)
                      . +.+|.|. |+|.|.|..|.. +..+.|.
T Consensus        77 v-~~~D~g~~Y~C~A~N~~G~~-~~~i~L~  104 (107)
T d1iray3          77 I-ESRFYKHPFTCFAKNTHGID-AAYIQLI  104 (107)
T ss_dssp             C-CGGGGSSCEEEEEECSSCEE-EEEEEEE
T ss_pred             c-chHHCCcEEEEEEEeCCCeE-EEEEEEE
Confidence            4 8999995 999999999987 5556665

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=4.1e-12  Score=103.86  Aligned_cols=80  Identities=13%  Similarity=0.129  Sum_probs=61.9

Q ss_pred             cCCCCCCeEEEEEEecC-CC--CCeEEEEeCCcccCCCceee------ecceEEEECCCCCCCCEEEEEEEEcCCCceEE
Q psy14896        682 EAPKAGDKVRLECVAFG-YP--VPSYNWTRRGSPLPRNAYFE------NFNRILTIPNVKVEDQGEYICRASNDRSALES  752 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g-~P--~p~i~W~k~g~~l~~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~  752 (813)
                      ..+.+|+.++|+|.+.| .|  .+.|+|+|||..|.......      ...+.|+|.....+|.|.|+|+|.|++|....
T Consensus        12 ~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~~~~~   91 (106)
T d1zxqa1          12 TLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSRGG   91 (106)
T ss_dssp             SEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEECGGGTC
T ss_pred             CEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecCCCCCC
Confidence            45789999999999986 44  45899999999886443221      12346888888888999999999999998777


Q ss_pred             EEEEEEEcC
Q psy14896        753 SVTISIQAE  761 (813)
Q Consensus       753 ~~~l~V~~~  761 (813)
                      .+.+.+..|
T Consensus        92 ~~~~~~s~p  100 (106)
T d1zxqa1          92 NIFHKHSAP  100 (106)
T ss_dssp             CEEEEECCC
T ss_pred             eeEecccCC
Confidence            777777553

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=2.2e-12  Score=108.27  Aligned_cols=90  Identities=21%  Similarity=0.300  Sum_probs=63.2

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccC-CCCeEEEeecccccccccccccccCCCccEEee-----C---CeEE
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGY-PNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS-----G---GNLI  259 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~-P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~-----~---~~l~  259 (813)
                      ||.|. .+....+.+|     +++.|.|.+.|. |.+.+.|++++..+....        ..++...     +   ..|.
T Consensus         7 Pp~i~-~~~~~~~~~G-----~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~--------~~~~~~~~~~~~~~~~s~L~   72 (115)
T d2crya1           7 PPIIS-STQTQHALHG-----EKGQIKCFIRSTPPPDRIAWSWKENVLESGT--------SGRYTVETISTEEGVISTLT   72 (115)
T ss_dssp             SCCEE-EECCCCCCTT-----SCCCCCEEECCSSCCSEEEEESSSCEECSEE--------ETTEEEEEEEETTEEEEEEE
T ss_pred             CCEEe-cCCCEEEecC-----CEEEEEEEeecCCCeeEEEEeeeeeeEeeee--------eeeEeeeeeccccCcEEEEE
Confidence            45554 3555555555     779999999885 566899999998774322        1122211     1   2467


Q ss_pred             EcCCccccC-CeeEEEEeecCceeeEeeeeEEeeee
Q psy14896        260 INDPRQVED-RGSYHCKASNKFGSIISESVQLAFGF  294 (813)
Q Consensus       260 i~~~~~~~d-~G~Y~C~a~n~~g~~~s~~~~l~v~~  294 (813)
                      |.+. +.+| +|.|+|.|+|..|.+ +..+.|.|..
T Consensus        73 I~~v-~~~D~~G~Y~C~A~N~~G~~-~~~~~L~V~~  106 (115)
T d2crya1          73 ISNI-VRADFQTIYNCTAWNSFGSD-TEIIRLKEQG  106 (115)
T ss_dssp             CTTC-CHHHHHSCEEEEEECSSCEE-EEEECCCCSC
T ss_pred             Eecc-chhcCCeEEEEEEEECCCeE-EEEEEEEEEC
Confidence            7775 7888 799999999999988 7778887753

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=7e-12  Score=101.65  Aligned_cols=94  Identities=10%  Similarity=0.003  Sum_probs=67.6

Q ss_pred             ecccccccCCCceeccCCCceEEeCCCCCCCcc--EEEEccCCCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEEEE
Q psy14896        567 FIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGV--NYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQ  644 (813)
Q Consensus       567 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~--~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  644 (813)
                      +|+.+.+...+..+.+|+.++|+|.+..++|.+  .++|+|++.++..  ..........+|.|..+..+|+|.|+|+|+
T Consensus         3 ~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~--~~~~~~~~~s~l~i~~~~~dd~g~ytC~A~   80 (103)
T d1iama1           3 TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKR--EPAVGEPAEVTTTVLVRRDHHGAQFSCRTE   80 (103)
T ss_dssp             CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEE--EECCTTTEEEEEEEECCSSCSSCEEEEEEE
T ss_pred             CCCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEccccccccc--cccccccceEEEEEeeehhHCCCEEEEEEE
Confidence            455666777777888999999999996677765  6889999875321  111111123359999999999999999999


Q ss_pred             eeecCccccCceeeEEEccCC
Q psy14896        645 SKVSDTGRNGPFFPLKVFPHS  665 (813)
Q Consensus       645 n~~g~~~~~~~~~~l~v~~~p  665 (813)
                      |..|..+..   +.+.+..++
T Consensus        81 n~~g~~~~~---~~~~~s~p~   98 (103)
T d1iama1          81 LDLRPQGLE---LFENTSAPY   98 (103)
T ss_dssp             EECGGGTSC---EEEEECCCE
T ss_pred             eCCCCccCe---EeeeEcCCC
Confidence            999876543   556665443

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.07  E-value=8.3e-11  Score=96.60  Aligned_cols=73  Identities=27%  Similarity=0.314  Sum_probs=54.0

Q ss_pred             cccccEEEEeee-ccCCCCeEEEeecccccccccccccccCCCccEEe-eCCeEEEcCCccccCCe---eEEEEeecCce
Q psy14896        207 SILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL-SGGNLIINDPRQVEDRG---SYHCKASNKFG  281 (813)
Q Consensus       207 ~~g~~v~l~C~~-~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~d~G---~Y~C~a~n~~g  281 (813)
                      .||++++|.|++ .|.|.|.+.|+|++..+.....   ......++.. .+++|.|.+. +.+|+|   .|+|.|+|..|
T Consensus        15 ~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~---~~~~~~~~~~~~~~~L~i~~v-~~~D~gd~g~Y~C~A~N~~g   90 (111)
T d1biha2          15 IEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNAD---VTDFDRRITAGPDGNLYFTIV-TKEDVSDIYKYVCTAKNAAV   90 (111)
T ss_dssp             BTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGC---CCCCCTTEEECTTSCEEEEEE-CGGGCCSSEEEEEEEECTTC
T ss_pred             cCCCeEEEEEEcccCCCCCEEEEEeCCcccccccc---ceeeeeeeccccccccEEeee-EeeccCCceEEEEEEEeCCC
Confidence            345889999997 7999999999999987643221   1122233343 4788999885 788776   79999999999


Q ss_pred             ee
Q psy14896        282 SI  283 (813)
Q Consensus       282 ~~  283 (813)
                      ..
T Consensus        91 ~~   92 (111)
T d1biha2          91 DE   92 (111)
T ss_dssp             SS
T ss_pred             Cc
Confidence            65

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=2.3e-10  Score=93.27  Aligned_cols=87  Identities=9%  Similarity=0.132  Sum_probs=53.0

Q ss_pred             CCCceeecCCCccccccEEEEeeecc-CC--CCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCee
Q psy14896        195 QPTDVVFDLSKRSILNDITLSCYAGG-YP--NPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS  271 (813)
Q Consensus       195 ~p~~~~v~~g~~~~g~~v~l~C~~~g-~P--~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~  271 (813)
                      .+....+.+|     +.++|+|.+.| +|  .++|+|||||++|..............    ....|.+.. ...+|.|.
T Consensus         8 ~~~p~~v~~G-----~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~----~~s~l~~~~-~~~d~g~~   77 (106)
T d1zxqa1           8 TLQPTLVAVG-----KSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQE----ATATFNSTA-DREDGHRN   77 (106)
T ss_dssp             EEESSEECTT-----SEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTC----EEEEEEEEC-CGGGGGCE
T ss_pred             cCCCCEEeCC-----CEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccc----eeEEEEEee-ehhcCCcE
Confidence            3344455555     77999999975 54  458999999998754332211111110    011244444 46778889


Q ss_pred             EEEEeecCceeeEeeeeEEee
Q psy14896        272 YHCKASNKFGSIISESVQLAF  292 (813)
Q Consensus       272 Y~C~a~n~~g~~~s~~~~l~v  292 (813)
                      |+|+|.|..|.. ...+.+.+
T Consensus        78 ytC~A~n~~~~~-~~~~~~~~   97 (106)
T d1zxqa1          78 FSCLAVLDLMSR-GGNIFHKH   97 (106)
T ss_dssp             EEEEEEEECGGG-TCCEEEEE
T ss_pred             EEEEEEecCCCC-CCeeEecc
Confidence            999999988754 33444444

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.9e-10  Score=91.65  Aligned_cols=74  Identities=16%  Similarity=0.262  Sum_probs=56.3

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCc--------------eeeecceEEEECCCCCCCCEEEEEEEEcCC
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA--------------YFENFNRILTIPNVKVEDQGEYICRASNDR  747 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~--------------~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~  747 (813)
                      +.+..|++|+|.|.+. .|.+.|.|++++..+....              .....+.+|+|.+++.+|+|.|+|.|.|..
T Consensus         5 v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~~   83 (93)
T d1ccza1           5 IYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNIT   83 (93)
T ss_dssp             EEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTCC
T ss_pred             EEEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECCC
Confidence            3567899999999874 6888999999987653110              112335689999999999999999999987


Q ss_pred             CceEEEEEEEE
Q psy14896        748 SALESSVTISI  758 (813)
Q Consensus       748 G~~~~~~~l~V  758 (813)
                      ++.+  +.|.|
T Consensus        84 ~t~~--~~l~V   92 (93)
T d1ccza1          84 DTMK--FFLYV   92 (93)
T ss_dssp             SCEE--EEEEE
T ss_pred             cEEE--EEEEE
Confidence            7554  55554

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.97  E-value=7.3e-10  Score=94.25  Aligned_cols=86  Identities=20%  Similarity=0.262  Sum_probs=63.8

Q ss_pred             cCCCCCCeEEEEEEecCCC---CCeEEEEeCCcccC-----CC------------ce--e-----eecceEEEECCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYP---VPSYNWTRRGSPLP-----RN------------AY--F-----ENFNRILTIPNVKVE  734 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P---~p~i~W~k~g~~l~-----~~------------~~--~-----~~~~~~L~i~~v~~~  734 (813)
                      +.+.+|++|+|.|.+.+.+   ...|.|+|.+....     .+            .+  +     ...+.+|.|.+++.+
T Consensus        12 V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~   91 (126)
T d1pkoa_          12 IRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFS   91 (126)
T ss_dssp             EEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCGG
T ss_pred             EEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEchh
Confidence            5677899999999986332   34799999753210     00            00  1     122468999999999


Q ss_pred             CCEEEEEEEEcCCCceEEEEEEEEEcCCccccc
Q psy14896        735 DQGEYICRASNDRSALESSVTISIQAEPNFTIP  767 (813)
Q Consensus       735 d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~~~~~  767 (813)
                      |+|.|.|.+.|..|..+..+.|.|.+|+.+..+
T Consensus        92 D~G~Y~C~v~~~~~~~~~~v~L~V~~P~~~~~p  124 (126)
T d1pkoa_          92 DEGGYTCFFRDHSYQEEAAVELKVEDPFYWINP  124 (126)
T ss_dssp             GCEEEEEEEEETTEEEEEEEEEEEECTTTTSST
T ss_pred             HCeEEEEEEEECCCEEEEEEEEEEeCCCEEeCC
Confidence            999999999999999999999999998776543

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=9.3e-10  Score=87.53  Aligned_cols=80  Identities=18%  Similarity=0.212  Sum_probs=55.5

Q ss_pred             ccccEEEEeeeccCCCCeEEEeeccccccccccc--ccccCCCccEEe--eCCeEEEcCCccccCCeeEEEEeecCceee
Q psy14896        208 ILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVAN--LIDPLSDKRFTL--SGGNLIINDPRQVEDRGSYHCKASNKFGSI  283 (813)
Q Consensus       208 ~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~--~~~~~~~~~~~~--~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~  283 (813)
                      +|++|+|.|.+. .|.+.|.|++++..+......  ........+..+  .+++|.|.+. +.+|+|.|+|+|.|..++.
T Consensus         9 ~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l-~~~DsG~Y~c~~~n~~~t~   86 (93)
T d1ccza1           9 VYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNL-TSSDEDEYEMESPNITDTM   86 (93)
T ss_dssp             TTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSC-CGGGCEEEEEECTTCCSCE
T ss_pred             ECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEec-ChhhCEEEEEEEECCCcEE
Confidence            347799999875 589999999999876432221  111222233333  2678999996 8999999999999987754


Q ss_pred             EeeeeEEee
Q psy14896        284 ISESVQLAF  292 (813)
Q Consensus       284 ~s~~~~l~v  292 (813)
                         .+.|+|
T Consensus        87 ---~~~l~V   92 (93)
T d1ccza1          87 ---KFFLYV   92 (93)
T ss_dssp             ---EEEEEE
T ss_pred             ---EEEEEE
Confidence               455554

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.86  E-value=2.7e-09  Score=85.12  Aligned_cols=77  Identities=17%  Similarity=0.251  Sum_probs=57.7

Q ss_pred             CCCCCCeEEEEEEec-CC-CCCeEEEEeCCcccCC----------Cc-eeeecceEEEECCCCCCCCEEEEEEEEcCCCc
Q psy14896        683 APKAGDKVRLECVAF-GY-PVPSYNWTRRGSPLPR----------NA-YFENFNRILTIPNVKVEDQGEYICRASNDRSA  749 (813)
Q Consensus       683 ~~~~G~~v~l~C~~~-g~-P~p~i~W~k~g~~l~~----------~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~  749 (813)
                      ....|++|+|.|... .. +...|.|+|++..+..          +. .....+.+|+|.+++.+|+|.|+|.+.|..|.
T Consensus         6 ~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~g~   85 (98)
T d1hnga1           6 WGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGT   85 (98)
T ss_dssp             EEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTCC
T ss_pred             EEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEeCCCC
Confidence            346799999999643 22 2347999998876521          11 11223568999999999999999999999998


Q ss_pred             e--EEEEEEEEE
Q psy14896        750 L--ESSVTISIQ  759 (813)
Q Consensus       750 ~--~~~~~l~V~  759 (813)
                      .  +.++.|.|.
T Consensus        86 ~~~~~~~~L~V~   97 (98)
T d1hnga1          86 RILNKALDLRIL   97 (98)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             EEEEEEEEEEEE
Confidence            6  678888886

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.77  E-value=7.9e-09  Score=82.34  Aligned_cols=85  Identities=16%  Similarity=0.257  Sum_probs=58.8

Q ss_pred             ccccEEEEeee-ccC-CCCeEEEeecccccccccccccccCCCccEE-eeCCeEEEcCCccccCCeeEEEEeecCceee-
Q psy14896        208 ILNDITLSCYA-GGY-PNPSYEWFKEDYVQDRLVANLIDPLSDKRFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSI-  283 (813)
Q Consensus       208 ~g~~v~l~C~~-~g~-P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~-  283 (813)
                      .|++|+|.|.. ... +...|.|+|++..+............+.+.. ..+++|.|.+. +.+|+|.|+|.+.+..|.. 
T Consensus         9 ~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl-~~~DsG~Y~c~v~~~~g~~~   87 (98)
T d1hnga1           9 LGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNL-TRDDSGTYNVTVYSTNGTRI   87 (98)
T ss_dssp             TTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSC-CGGGCEEEEEEEEETTCCEE
T ss_pred             cCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCC-CHHHCEEEEEEEEeCCCCEE
Confidence            45889999974 222 2347999999887643332222222333444 35889999996 8999999999999988875 


Q ss_pred             EeeeeEEeee
Q psy14896        284 ISESVQLAFG  293 (813)
Q Consensus       284 ~s~~~~l~v~  293 (813)
                      .+..+.|.|.
T Consensus        88 ~~~~~~L~V~   97 (98)
T d1hnga1          88 LNKALDLRIL   97 (98)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            3566777764

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.58  E-value=8.2e-08  Score=77.58  Aligned_cols=84  Identities=14%  Similarity=0.153  Sum_probs=55.2

Q ss_pred             ccccEEEEeeeccCCCCeEEEeecccccccccccc---------cccCCCccEEe-eCCeEEEcCCccccCCeeEEEEee
Q psy14896        208 ILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANL---------IDPLSDKRFTL-SGGNLIINDPRQVEDRGSYHCKAS  277 (813)
Q Consensus       208 ~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~---------~~~~~~~~~~~-~~~~l~i~~~~~~~d~G~Y~C~a~  277 (813)
                      +|++|+|.|.........+.|+|+...........         ..+....|..+ .+++|.|.+. +.+|+|.|+|.+.
T Consensus        13 ~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v-~~~D~G~Y~c~v~   91 (107)
T d1l6za1          13 EDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMI-TMKDMGVYTLDMT   91 (107)
T ss_dssp             TTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSC-CGGGCEEEEEEEE
T ss_pred             CCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCC-CchhCEEEEEEEE
Confidence            45889999984322356899999764322111110         11222345554 5889999996 8999999999998


Q ss_pred             cCceeeEeeeeEEee
Q psy14896        278 NKFGSIISESVQLAF  292 (813)
Q Consensus       278 n~~g~~~s~~~~l~v  292 (813)
                      +..+...+..+.|+|
T Consensus        92 ~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          92 DENYRRTQATVRFHV  106 (107)
T ss_dssp             ETTEEECCCCEEECC
T ss_pred             ECCCCEEEEEEEEEE
Confidence            876654456677765

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.54  E-value=8.4e-08  Score=77.50  Aligned_cols=82  Identities=12%  Similarity=0.174  Sum_probs=58.7

Q ss_pred             CceeecCCCeEEEecCCCCCCcceEEEeecccccc-----------------ccCCccEEEccCccEEEeeeeecCCeee
Q psy14896        304 PEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNF-----------------VEEDKRVFVSYDGALYFSALEQIDAGNY  366 (813)
Q Consensus       304 ~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~-----------------~~~~~~~~~~~~~~L~i~~v~~~D~G~Y  366 (813)
                      |..+.+|+.++|.|....+ ....+.|+|+.....                 ..-..|..+..+++|.|.+++.+|+|.|
T Consensus         8 P~~v~~G~~V~L~c~~~p~-~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~~D~G~Y   86 (107)
T d1l6za1           8 PPQVAEDNNVLLLVHNLPL-ALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVY   86 (107)
T ss_dssp             SSSCCTTCCEEEEEESCCT-TCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCGGGCEEE
T ss_pred             CCcccCCCCEEEEecCCCC-CceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCchhCEEE
Confidence            4456799999999984333 357899998643211                 1124588888899999999999999999


Q ss_pred             EEEEeeeccccCCCCCceeeEE
Q psy14896        367 SCNVQSKVSDTGRNGPFFPLKV  388 (813)
Q Consensus       367 ~C~a~n~~g~~~~~s~~~~l~v  388 (813)
                      +|.+.+..+...  +..+.|.|
T Consensus        87 ~c~v~~~~~~~~--~~~v~L~V  106 (107)
T d1l6za1          87 TLDMTDENYRRT--QATVRFHV  106 (107)
T ss_dssp             EEEEEETTEEEC--CCCEEECC
T ss_pred             EEEEEECCCCEE--EEEEEEEE
Confidence            999987765332  22355554

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.45  E-value=1.4e-06  Score=73.10  Aligned_cols=102  Identities=16%  Similarity=0.173  Sum_probs=64.4

Q ss_pred             cceEEeCCCc-eEecccccccccCeEEEEEeeccC---CCcEEEeeccccccc-------eeccccCCCCCceEEee---
Q psy14896        462 GPYFIKQPTD-VVFDLSKRSILNDITLSCYAGGYP---NPSYEWFKEDYVQDR-------LVANLIDPLSDKRFTLS---  527 (813)
Q Consensus       462 g~y~~~~~~~-~~~~~~~~~~g~~~~l~C~~~g~p---~~~v~W~k~~~~~~~-------~~~~~~~~~~~~~~~~~---  527 (813)
                      |.+.+..|.. +..     .+|++++|.|.+...+   ...+.|++.+.....       ............+..+.   
T Consensus         1 gq~~V~~p~~~V~~-----~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   75 (126)
T d1pkoa_           1 GQFRVIGPGHPIRA-----LVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKES   75 (126)
T ss_dssp             CCCEEECCSSCEEE-----ETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTT
T ss_pred             CeEEEECCCCCEEE-----EcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeecc
Confidence            4455666655 333     6899999999986433   345999997643110       00111112222333322   


Q ss_pred             ----CCeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEEeeccc
Q psy14896        528 ----GGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGE  570 (813)
Q Consensus       528 ----~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~p~  570 (813)
                          +.+|.|.++ +.+|+|.|+|.+.+..+.. +..+.|.|..|..
T Consensus        76 ~~~~~~sL~I~~v-~~~D~G~Y~C~v~~~~~~~-~~~v~L~V~~P~~  120 (126)
T d1pkoa_          76 IGEGKVALRIQNV-RFSDEGGYTCFFRDHSYQE-EAAVELKVEDPFY  120 (126)
T ss_dssp             GGGTEEEEEESSC-CGGGCEEEEEEEEETTEEE-EEEEEEEEECTTT
T ss_pred             ccCCeEEEEEEEE-chhHCeEEEEEEEECCCEE-EEEEEEEEeCCCE
Confidence                248999997 9999999999999987766 4557888876544

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=2.1e-07  Score=75.65  Aligned_cols=80  Identities=15%  Similarity=0.271  Sum_probs=56.5

Q ss_pred             CCCCCCeEEEEEEec-CCCCC--eEEEEeCCcccCCCcee--------eecceEEEECCCCCCCCEEEEEEEEcCCCc--
Q psy14896        683 APKAGDKVRLECVAF-GYPVP--SYNWTRRGSPLPRNAYF--------ENFNRILTIPNVKVEDQGEYICRASNDRSA--  749 (813)
Q Consensus       683 ~~~~G~~v~l~C~~~-g~P~p--~i~W~k~g~~l~~~~~~--------~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~--  749 (813)
                      .+.+|+.++|+|.+. +.|.+  .|+|++++..+......        ....+.|++.....+|...|+|+|+|.++.  
T Consensus        12 ~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~~~   91 (109)
T d1vcaa1          12 PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMD   91 (109)
T ss_dssp             CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCT
T ss_pred             CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCCcc
Confidence            367899999999998 57754  79999999877532211        111345777655555555999999998754  


Q ss_pred             -----eEEEEEEEEEcCC
Q psy14896        750 -----LESSVTISIQAEP  762 (813)
Q Consensus       750 -----~~~~~~l~V~~~P  762 (813)
                           .++...|.|..+|
T Consensus        92 ~~~~~~~t~~~L~V~~~P  109 (109)
T d1vcaa1          92 SVPTVRQAVKELQVYISP  109 (109)
T ss_dssp             TSCSEEEEEEECCEECCC
T ss_pred             ccccccceeEEeEEEeCC
Confidence                 3456678888876

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=1.2e-07  Score=79.82  Aligned_cols=78  Identities=13%  Similarity=0.273  Sum_probs=57.1

Q ss_pred             cCCCCCCeEEEEEEecCCCC----CeEEEEeCCcccCCC---------------------cee-------eecceEEEEC
Q psy14896        682 EAPKAGDKVRLECVAFGYPV----PSYNWTRRGSPLPRN---------------------AYF-------ENFNRILTIP  729 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~----p~i~W~k~g~~l~~~---------------------~~~-------~~~~~~L~i~  729 (813)
                      +.+.+|++++|.|.+.+.+.    ..+.|++........                     .+.       ......|+|.
T Consensus        14 v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~   93 (124)
T d1eaja_          14 IEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVT   93 (124)
T ss_dssp             EEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEEC
T ss_pred             EEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEEc
Confidence            45679999999999875443    369999742211100                     010       1123479999


Q ss_pred             CCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896        730 NVKVEDQGEYICRASNDRSALESSVTISIQ  759 (813)
Q Consensus       730 ~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  759 (813)
                      +++.+|+|.|.|.+.|..|..+..+.|+|.
T Consensus        94 ~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          94 NLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            999999999999999999988889999885

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=6.6e-07  Score=71.07  Aligned_cols=92  Identities=14%  Similarity=0.197  Sum_probs=60.6

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccC
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED  268 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d  268 (813)
                      +|.+...|.. .|..|     ++|+|.|.+.. +...+.|||+|.......     .............+.|.+ ++.+|
T Consensus         7 kPsLsa~P~~-~V~~G-----~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~-----~~~~~~~~~~~a~F~l~~-vt~~~   73 (99)
T d1ucta1           7 MPFISAKSSP-VIPLD-----GSVKIQCQAIR-EAYLTQLMIIKNSTYREI-----GRRLKFWNETDPEFVIDH-MDANK   73 (99)
T ss_dssp             CCCEEESSCS-EEETT-----CCEEEEECCCT-TCSEEEEEEEETTEEEEC-----SEECC----CCCEEEECS-CCGGG
T ss_pred             CCEEEecCCC-ceeCC-----CeEEEEEcCCC-CCcEEEEEECCCcCceec-----cccccCCCCceEEEEecC-CCHHH
Confidence            5888888865 46666     66999999864 677999999986321100     000000011123466666 58999


Q ss_pred             CeeEEEEeecCce-eeEeeeeEEeee
Q psy14896        269 RGSYHCKASNKFG-SIISESVQLAFG  293 (813)
Q Consensus       269 ~G~Y~C~a~n~~g-~~~s~~~~l~v~  293 (813)
                      +|.|+|...+... +..|..++|.|.
T Consensus        74 ~G~Y~C~y~~~~~~S~~Sdpl~L~VT   99 (99)
T d1ucta1          74 AGRYQCQYRIGHYRFRYSDTLELVVT   99 (99)
T ss_dssp             CEEEEEEEEETTTEEEECCCEEEEEE
T ss_pred             CceEEEEEECCCcccCCCCCEEEEeC
Confidence            9999999998765 456778888763

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1.9e-07  Score=74.18  Aligned_cols=72  Identities=26%  Similarity=0.418  Sum_probs=51.2

Q ss_pred             CCCCCCeEEEEEEecCCCCCeEEEEeCCcccC----------CC----cee-------eecceEEEECCCCCCCCEEEEE
Q psy14896        683 APKAGDKVRLECVAFGYPVPSYNWTRRGSPLP----------RN----AYF-------ENFNRILTIPNVKVEDQGEYIC  741 (813)
Q Consensus       683 ~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~----------~~----~~~-------~~~~~~L~i~~v~~~d~G~Y~C  741 (813)
                      ...+|++|+|.|.........+.|++......          ..    .++       ...+.+|+|.+++.+|+|.|.|
T Consensus         5 ~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~C   84 (97)
T d2nxyb1           5 LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYIC   84 (97)
T ss_dssp             EEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEEE
T ss_pred             EEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEEE
Confidence            45789999999999877777899998543210          00    011       1123469999999999999999


Q ss_pred             EEEcCCCceEEEEEEEE
Q psy14896        742 RASNDRSALESSVTISI  758 (813)
Q Consensus       742 ~a~N~~G~~~~~~~l~V  758 (813)
                      .+.|.    +..+.|.|
T Consensus        85 ~v~~~----~~~v~L~V   97 (97)
T d2nxyb1          85 EVEDQ----KEEVQLLV   97 (97)
T ss_dssp             EETTE----EEEEEEEE
T ss_pred             EEecC----CeEEEEEC
Confidence            99763    45666655

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=1.3e-06  Score=70.85  Aligned_cols=86  Identities=19%  Similarity=0.181  Sum_probs=50.9

Q ss_pred             cccccEEEEeeec-cCCCC--eEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCe-eEEEEeecCcee
Q psy14896        207 SILNDITLSCYAG-GYPNP--SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG-SYHCKASNKFGS  282 (813)
Q Consensus       207 ~~g~~v~l~C~~~-g~P~p--~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G-~Y~C~a~n~~g~  282 (813)
                      .+|+.++|+|.+. ++|.+  .|.||++++.+....... .......+.. ...|.+. . +.+|.| .|+|+|+|..+.
T Consensus        14 ~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~-~~~~~~~~~~-~s~l~~~-~-~~~D~g~~ltC~a~~~~~~   89 (109)
T d1vcaa1          14 EAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLE-DADRKSLETK-SLEVTFT-P-VIEDIGKVLVCRAKLHIDE   89 (109)
T ss_dssp             ETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCS-CCSSCCCEEE-EEEEEEC-C-CGGGTTCEEEEEEEECSCC
T ss_pred             cCCCeEEEEeEeCCcCCCCceEEEEeccCceeecccccc-ccccCCccee-eEEEEcc-C-ChHHCCcEEEEEEEcCcCC
Confidence            3458899999996 57855  699999998775322111 1111111211 2234444 3 445555 799999987544


Q ss_pred             e------EeeeeEEeeeeec
Q psy14896        283 I------ISESVQLAFGFIG  296 (813)
Q Consensus       283 ~------~s~~~~l~v~~~~  296 (813)
                      .      .+....|.|.+.|
T Consensus        90 ~~~~~~~~~t~~~L~V~~~P  109 (109)
T d1vcaa1          90 MDSVPTVRQAVKELQVYISP  109 (109)
T ss_dssp             CTTSCSEEEEEEECCEECCC
T ss_pred             ccccccccceeEEeEEEeCC
Confidence            2      3445667777654

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=5.7e-07  Score=71.33  Aligned_cols=72  Identities=17%  Similarity=0.268  Sum_probs=45.6

Q ss_pred             cccccEEEEeeeccCCCCeEEEeeccccccccccc----ccccCCCccEEe-----e--CCeEEEcCCccccCCeeEEEE
Q psy14896        207 SILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVAN----LIDPLSDKRFTL-----S--GGNLIINDPRQVEDRGSYHCK  275 (813)
Q Consensus       207 ~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~----~~~~~~~~~~~~-----~--~~~l~i~~~~~~~d~G~Y~C~  275 (813)
                      .+|++|+|.|.........+.||+...........    ..+.....+...     .  +-+|.|.+. +.+|+|.|.|.
T Consensus         7 ~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l-~~~DsG~Y~C~   85 (97)
T d2nxyb1           7 KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNL-KIEDSDTYICE   85 (97)
T ss_dssp             ETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSC-CGGGCEEEEEE
T ss_pred             EcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCC-ChHHCEEEEEE
Confidence            35688999999987677789999875432111100    001112223322     1  235888885 99999999999


Q ss_pred             eecC
Q psy14896        276 ASNK  279 (813)
Q Consensus       276 a~n~  279 (813)
                      +.+.
T Consensus        86 v~~~   89 (97)
T d2nxyb1          86 VEDQ   89 (97)
T ss_dssp             ETTE
T ss_pred             EecC
Confidence            9764

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=2.7e-06  Score=66.53  Aligned_cols=90  Identities=16%  Similarity=0.168  Sum_probs=59.2

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccC
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED  268 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d  268 (813)
                      +|.|...|... |..|     ++|+|.|.... +...+.|||+|......    .......   .....+.|.+ ++.+|
T Consensus         4 KPsLsa~P~~~-V~~G-----~~VTL~C~~~~-~~~~f~L~k~g~~~~~~----~~~~~~~---~~~a~F~i~~-v~~~~   68 (95)
T d1olla1           4 KPFIWAEPHFM-VPKE-----KQVTICCQGNY-GAVEYQLHFEGSLFAVD----RPKPPER---INKVKFYIPD-MNSRM   68 (95)
T ss_dssp             CCEEEEESCSE-EETT-----CCEEEEEECCT-TCCEEEEEETTEEEEEE----CCSSCTT---CCEEEEEESS-CCGGG
T ss_pred             CCEEEeeCCCc-ccCC-----CcEEEEEecCC-CccEEEEEECCCCccee----EEccCCC---ccEEEEEEee-eecCC
Confidence            58888888665 5566     56999999864 56799999998632100    0000000   0012456666 58999


Q ss_pred             CeeEEEEeecCce-eeEeeeeEEeee
Q psy14896        269 RGSYHCKASNKFG-SIISESVQLAFG  293 (813)
Q Consensus       269 ~G~Y~C~a~n~~g-~~~s~~~~l~v~  293 (813)
                      +|.|+|...+..+ +..|..++|.|.
T Consensus        69 ~G~Y~C~y~~~~~~S~~Sd~leL~VT   94 (95)
T d1olla1          69 AGQYSCIYRVGELWSEPSNLLDLVVT   94 (95)
T ss_dssp             CEEEEEEEEETTEECCCCCCEEEEEE
T ss_pred             CceEEEEeCCCCCccCCCCCEEEEEe
Confidence            9999999987654 445777888774

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=1.2e-05  Score=62.60  Aligned_cols=87  Identities=17%  Similarity=0.212  Sum_probs=55.9

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccC
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED  268 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d  268 (813)
                      +|.+...|.. .|..|     ++|+|.|.....+.-.+.|+|+|....           -....-.+.....+..++.+|
T Consensus         5 kP~Lsa~P~~-~V~~G-----~~VTL~C~~~~~~~~~f~L~k~g~~~~-----------~~~~~~~~~a~F~l~~v~~~~   67 (96)
T d1ucta2           5 KPFLSADRGL-VLMPG-----ENISLTCSSAHIPFDRFSLAKEGELSL-----------PQHQSGEHPANFSLGPVDLNV   67 (96)
T ss_dssp             CCEEEESSCS-EECTT-----CCCEEEEECSSSCCSEEEEEETTCSSC-----------CSEEECSSSEEEECCSCCGGG
T ss_pred             CCEEEEeCCC-ccCCC-----CeEEEEEeCCCCCceEEEEEECCcccc-----------eEEcCCCcccEEEEecccccc
Confidence            5888888865 56666     669999987433556899999995321           011111122333344458999


Q ss_pred             CeeEEEEeecCc----eeeEeeeeEEee
Q psy14896        269 RGSYHCKASNKF----GSIISESVQLAF  292 (813)
Q Consensus       269 ~G~Y~C~a~n~~----g~~~s~~~~l~v  292 (813)
                      +|.|+|......    .+..|..++|.|
T Consensus        68 ~G~Y~C~y~~~~~p~~~S~~Sd~leL~V   95 (96)
T d1ucta2          68 SGIYRCYGWYNRSPYLWSFPSNALELVV   95 (96)
T ss_dssp             CEEEEEEEECTTSTTEECCCCCCEEEEE
T ss_pred             CcEEEEEEEcCCCCCCccCCCCCEEEEE
Confidence            999999886432    344577777776

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.10  E-value=3.1e-06  Score=70.11  Aligned_cols=78  Identities=19%  Similarity=0.316  Sum_probs=51.5

Q ss_pred             cCCCCCCeEEEEEEecCC----CCCeEEEEeCCc--c----c----------CCC----cee------eecceEEEECCC
Q psy14896        682 EAPKAGDKVRLECVAFGY----PVPSYNWTRRGS--P----L----------PRN----AYF------ENFNRILTIPNV  731 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~----P~p~i~W~k~g~--~----l----------~~~----~~~------~~~~~~L~i~~v  731 (813)
                      ..+..|++|+|.|.....    ....|.|+|...  .    +          ...    .++      ...+.+|+|.++
T Consensus         9 v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   88 (119)
T d1neua_           9 VYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHNL   88 (119)
T ss_dssp             EEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEECSC
T ss_pred             EEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEEECCC
Confidence            567889999999987522    234899987321  1    0          000    011      112347999999


Q ss_pred             CCCCCEEEEEEEEcCC--CceEEEEEEEEE
Q psy14896        732 KVEDQGEYICRASNDR--SALESSVTISIQ  759 (813)
Q Consensus       732 ~~~d~G~Y~C~a~N~~--G~~~~~~~l~V~  759 (813)
                      +.+|+|.|.|.+.+.-  ......+.|.|.
T Consensus        89 ~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          89 DYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             CGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             ChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            9999999999999854  344566777774

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.10  E-value=1.4e-05  Score=65.87  Aligned_cols=83  Identities=20%  Similarity=0.283  Sum_probs=53.3

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeec--cccccc---c-------ccccccc--CCCccEEee
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKE--DYVQDR---L-------VANLIDP--LSDKRFTLS  254 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~--g~~l~~---~-------~~~~~~~--~~~~~~~~~  254 (813)
                      +|.+...|..+.+.+|     ++|+|.|.+.+.....+.|||-  |+.+..   .       .......  ....++...
T Consensus         1 a~~~~~~P~~~~~~~G-----~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~   75 (122)
T d1nezg_           1 APELRIFPKKMDAELG-----QKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAM   75 (122)
T ss_dssp             CCEEEEESSCEEECTT-----CCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEE
T ss_pred             CCceEEcCCEEEECCC-----CCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEE
Confidence            3677888899988777     7799999998777788999983  222110   0       0001111  111233221


Q ss_pred             ---C--CeEEEcCCccccCCeeEEEEee
Q psy14896        255 ---G--GNLIINDPRQVEDRGSYHCKAS  277 (813)
Q Consensus       255 ---~--~~l~i~~~~~~~d~G~Y~C~a~  277 (813)
                         +  .+|.|.+. +.+|+|.|.|.+.
T Consensus        76 ~~~~~~~~L~I~~~-~~~Dsg~YyCa~~  102 (122)
T d1nezg_          76 RDTNNKYVLTLNKF-SKENEGYYFCSVI  102 (122)
T ss_dssp             EETTTEEEEEESSC-CGGGCEEEEEEEE
T ss_pred             CCCCCEeEEEEccc-ccCCCEEEEeeEe
Confidence               2  24788775 9999999999876

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=8.2e-06  Score=68.06  Aligned_cols=88  Identities=17%  Similarity=0.284  Sum_probs=55.0

Q ss_pred             eeecCCCccccccEEEEeeeccCCC----CeEEEeeccccccccc--------c---cccccCCCccEEee-------CC
Q psy14896        199 VVFDLSKRSILNDITLSCYAGGYPN----PSYEWFKEDYVQDRLV--------A---NLIDPLSDKRFTLS-------GG  256 (813)
Q Consensus       199 ~~v~~g~~~~g~~v~l~C~~~g~P~----p~v~W~k~g~~l~~~~--------~---~~~~~~~~~~~~~~-------~~  256 (813)
                      +.+.+|     ++++|.|.....+.    ..+.|++.........        .   .........|..+.       +.
T Consensus        14 v~~~~G-----~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~   88 (124)
T d1eaja_          14 IEKAKG-----ETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDA   88 (124)
T ss_dssp             EEEETT-----SCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBC
T ss_pred             EEEECC-----CcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEE
Confidence            455555     77999999865332    3589998543221100        0   01111222343332       23


Q ss_pred             eEEEcCCccccCCeeEEEEeecCceeeEeeeeEEeee
Q psy14896        257 NLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFG  293 (813)
Q Consensus       257 ~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~  293 (813)
                      +|.|.+. +.+|+|.|.|.+.+..|.. +..+.|.|.
T Consensus        89 sL~I~~v-~~~D~G~Y~C~v~~~~~~~-~~~~~L~V~  123 (124)
T d1eaja_          89 SINVTNL-QLSDIGTYQCKVKKAPGVA-NKKIHLVVL  123 (124)
T ss_dssp             CEEECSC-CGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             EEEEccc-EEccCEEEEEEEEECCCeE-EeEEEEEEE
Confidence            6888886 9999999999999888766 667777764

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=2.6e-06  Score=66.59  Aligned_cols=88  Identities=17%  Similarity=0.126  Sum_probs=57.5

Q ss_pred             cccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCccEEEccCccEEEeeeeecCCeeeEEEEeeecccc
Q psy14896        298 FNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDT  377 (813)
Q Consensus       298 ~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~  377 (813)
                      +...+. ..+..|+.++|.|..  ..+...+.|+|+|..................+.|.+|+..|+|.|+|...+... .
T Consensus         7 Lsa~P~-~~V~~G~~VTL~C~~--~~~~~~f~L~k~g~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~-~   82 (95)
T d1olla1           7 IWAEPH-FMVPKEKQVTICCQG--NYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGEL-W   82 (95)
T ss_dssp             EEEESC-SEEETTCCEEEEEEC--CTTCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTE-E
T ss_pred             EEeeCC-CcccCCCcEEEEEec--CCCccEEEEEECCCCcceeEEccCCCccEEEEEEeeeecCCCceEEEEeCCCCC-c
Confidence            333443 356789999999994  345678999999864222111100011123699999999999999999876543 3


Q ss_pred             CCCCCceeeEEc
Q psy14896        378 GRNGPFFPLKVF  389 (813)
Q Consensus       378 ~~~s~~~~l~v~  389 (813)
                      +..|+.+.|.|.
T Consensus        83 S~~Sd~leL~VT   94 (95)
T d1olla1          83 SEPSNLLDLVVT   94 (95)
T ss_dssp             CCCCCCEEEEEE
T ss_pred             cCCCCCEEEEEe
Confidence            455666777763

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=6.3e-06  Score=64.21  Aligned_cols=65  Identities=14%  Similarity=0.252  Sum_probs=48.8

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcC
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASND  746 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~  746 (813)
                      ..|..|++|+|.|.....+.-.+.|+|+|...............+.|.+++.+|+|.|+|.....
T Consensus        14 ~~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   78 (96)
T d1ucta2          14 LVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYN   78 (96)
T ss_dssp             SEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSEEECSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             CccCCCCeEEEEEeCCCCCceEEEEEECCcccceEEcCCCcccEEEEeccccccCcEEEEEEEcC
Confidence            35788999999998643344589999999754333322233567999999999999999988643

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.06  E-value=1.5e-05  Score=63.51  Aligned_cols=82  Identities=24%  Similarity=0.412  Sum_probs=51.1

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeec--cccccccc--ccccccCCCccEEee----CCeEEEcCC
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKE--DYVQDRLV--ANLIDPLSDKRFTLS----GGNLIINDP  263 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~--g~~l~~~~--~~~~~~~~~~~~~~~----~~~l~i~~~  263 (813)
                      ++..|..+.+.+|     ++|+|.|.........+.|||.  |+......  ..........+....    +.+|.|.+.
T Consensus         4 ltQ~P~s~~~~~G-----~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l   78 (107)
T d1c5cl1           4 LTQSPSSLSASLG-----ERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSL   78 (107)
T ss_dssp             EEEECSEEEECTT-----CCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSC
T ss_pred             EEccCCEEEECCC-----CCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhh
Confidence            3455777777776     7799999998766777999984  33321111  011112222233222    236888886


Q ss_pred             ccccCCeeEEEEeecC
Q psy14896        264 RQVEDRGSYHCKASNK  279 (813)
Q Consensus       264 ~~~~d~G~Y~C~a~n~  279 (813)
                       +.+|+|.|.|.+.+.
T Consensus        79 -~~~Dsa~YyCa~~~~   93 (107)
T d1c5cl1          79 -ESEDFADYYCLQYAS   93 (107)
T ss_dssp             -CGGGCSEEEEEECSS
T ss_pred             -cccCCeEEEEecCcC
Confidence             899999999987643

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=2.7e-06  Score=70.05  Aligned_cols=82  Identities=18%  Similarity=0.340  Sum_probs=53.9

Q ss_pred             CcCCCCCCeEEEEEEecCCC---CCeEEEEeCCc--cc----CCC--------ce--e----eecceEEEECCCCCCCCE
Q psy14896        681 PEAPKAGDKVRLECVAFGYP---VPSYNWTRRGS--PL----PRN--------AY--F----ENFNRILTIPNVKVEDQG  737 (813)
Q Consensus       681 ~~~~~~G~~v~l~C~~~g~P---~p~i~W~k~g~--~l----~~~--------~~--~----~~~~~~L~i~~v~~~d~G  737 (813)
                      .+.+.+|++|+|.|......   ...+.|+|...  .+    ...        .+  .    .....+|+|.+++.+|+|
T Consensus         8 ~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~DsG   87 (116)
T d1xeda_           8 EVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSG   87 (116)
T ss_dssp             EEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             EEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcCCCE
Confidence            36678999999999876332   23688998432  11    000        01  1    112347999999999999


Q ss_pred             EEEEEEEcCCCceEEEEEEEEEcCC
Q psy14896        738 EYICRASNDRSALESSVTISIQAEP  762 (813)
Q Consensus       738 ~Y~C~a~N~~G~~~~~~~l~V~~~P  762 (813)
                      .|.|.+..........+.|+|.+.+
T Consensus        88 ~Y~C~v~~~~~~~~~~v~L~V~~~~  112 (116)
T d1xeda_          88 RYKCGLGINSRGLSFDVSLEVLEHH  112 (116)
T ss_dssp             EEEEEESCGGGCCEEEEEEEEECCC
T ss_pred             EEEEEEEcCCCCceEeEEEEEECCC
Confidence            9999987554445567888887543

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.04  E-value=4.4e-06  Score=68.23  Aligned_cols=65  Identities=17%  Similarity=0.187  Sum_probs=46.8

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeC--CcccC------------CCcee------eecceEEEECCCCCCCCEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRR--GSPLP------------RNAYF------ENFNRILTIPNVKVEDQGEYIC  741 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~--g~~l~------------~~~~~------~~~~~~L~i~~v~~~d~G~Y~C  741 (813)
                      +.+.+|++|+|+|.........+.|||.  |+.+.            ...++      ......|.|.+++.+|+|.|.|
T Consensus        11 v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~YyC   90 (115)
T d1lp9e1          11 VTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSALYYC   90 (115)
T ss_dssp             EEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGCEEEEE
T ss_pred             EEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccccCccceE
Confidence            4578999999999998777778999984  32111            00111      1123469999999999999999


Q ss_pred             EEEcC
Q psy14896        742 RASND  746 (813)
Q Consensus       742 ~a~N~  746 (813)
                      .+...
T Consensus        91 a~~~~   95 (115)
T d1lp9e1          91 ALFLA   95 (115)
T ss_dssp             EEEEC
T ss_pred             EEEcC
Confidence            88654

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.03  E-value=4.2e-06  Score=66.95  Aligned_cols=64  Identities=22%  Similarity=0.320  Sum_probs=46.1

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeC--CcccC------------CCcee----eecceEEEECCCCCCCCEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRR--GSPLP------------RNAYF----ENFNRILTIPNVKVEDQGEYICRA  743 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~--g~~l~------------~~~~~----~~~~~~L~i~~v~~~d~G~Y~C~a  743 (813)
                      ..+.+|++|+|.|.........+.|||-  |..+.            ...++    ......|+|.+++.+|+|.|.|.+
T Consensus        10 l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~DsA~YyCa~   89 (106)
T d1a0ql1          10 LSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDIATYYCLQ   89 (106)
T ss_dssp             EEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCSEEEEEE
T ss_pred             EEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCCEeEEEEE
Confidence            5678999999999988766667999983  22110            00111    123457999999999999999987


Q ss_pred             Ec
Q psy14896        744 SN  745 (813)
Q Consensus       744 ~N  745 (813)
                      .+
T Consensus        90 ~~   91 (106)
T d1a0ql1          90 YY   91 (106)
T ss_dssp             CS
T ss_pred             eC
Confidence            64

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.03  E-value=3.2e-06  Score=69.00  Aligned_cols=65  Identities=18%  Similarity=0.355  Sum_probs=47.6

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeCC--cccC-------CC-----cee------eecceEEEECCCCCCCCEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRRG--SPLP-------RN-----AYF------ENFNRILTIPNVKVEDQGEYIC  741 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g--~~l~-------~~-----~~~------~~~~~~L~i~~v~~~d~G~Y~C  741 (813)
                      ..+.+|++|+|.|.....+...+.|||-.  ....       ..     .++      .....+|+|.+++.+|+|.|.|
T Consensus        10 ~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~Dsg~Y~C   89 (114)
T d2cdea1          10 LIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSASYIC   89 (114)
T ss_dssp             EEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGGCSEEEE
T ss_pred             EEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhhCcccce
Confidence            56789999999999987777789999832  2110       00     011      1224579999999999999999


Q ss_pred             EEEcC
Q psy14896        742 RASND  746 (813)
Q Consensus       742 ~a~N~  746 (813)
                      .+.+.
T Consensus        90 a~~~~   94 (114)
T d2cdea1          90 VVSDR   94 (114)
T ss_dssp             EEECS
T ss_pred             eeecC
Confidence            99875

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=5.2e-06  Score=65.71  Aligned_cols=87  Identities=14%  Similarity=0.117  Sum_probs=56.9

Q ss_pred             cccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCcc--EEEccCccEEEeeeeecCCeeeEEEEeeecc
Q psy14896        298 FNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKR--VFVSYDGALYFSALEQIDAGNYSCNVQSKVS  375 (813)
Q Consensus       298 ~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~--~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g  375 (813)
                      +...+. ..+..|+.++|.|..  ..+...+.|+|+|..........  ........+.|.+|+.+|+|.|+|...+...
T Consensus        10 Lsa~P~-~~V~~G~~VTL~C~~--~~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~~~~   86 (99)
T d1ucta1          10 ISAKSS-PVIPLDGSVKIQCQA--IREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHY   86 (99)
T ss_dssp             EEESSC-SEEETTCCEEEEECC--CTTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEETTT
T ss_pred             EEecCC-CceeCCCeEEEEEcC--CCCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEECCCc
Confidence            334443 457789999999985  34678999999986422211110  0111233699999999999999999987543


Q ss_pred             ccCCCCCceeeEE
Q psy14896        376 DTGRNGPFFPLKV  388 (813)
Q Consensus       376 ~~~~~s~~~~l~v  388 (813)
                       .+..|..+.|.|
T Consensus        87 -~S~~Sdpl~L~V   98 (99)
T d1ucta1          87 -RFRYSDTLELVV   98 (99)
T ss_dssp             -EEEECCCEEEEE
T ss_pred             -ccCCCCCEEEEe
Confidence             234456666665

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.01  E-value=1.8e-05  Score=63.07  Aligned_cols=81  Identities=21%  Similarity=0.408  Sum_probs=51.1

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeec--ccccccccc--cccccCCCccEEee----CCeEEEcCC
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKE--DYVQDRLVA--NLIDPLSDKRFTLS----GGNLIINDP  263 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~--g~~l~~~~~--~~~~~~~~~~~~~~----~~~l~i~~~  263 (813)
                      ++..|..+.+.+|     ++|+|.|...+.....+.|||.  |+...-...  .........++...    +.+|.|.+.
T Consensus         4 ltQsP~slsv~~G-----~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~   78 (106)
T d1i8ka_           4 LTQSPASLSVATG-----EKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENT   78 (106)
T ss_dssp             EEEECSEEECCTT-----CCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSC
T ss_pred             EEeeCCEEEECCC-----CCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCC
Confidence            4455777777776     7799999987656667999974  433211110  11122233344432    234788775


Q ss_pred             ccccCCeeEEEEeec
Q psy14896        264 RQVEDRGSYHCKASN  278 (813)
Q Consensus       264 ~~~~d~G~Y~C~a~n  278 (813)
                       +.+|+|.|.|.+.+
T Consensus        79 -~~~Dsa~YyCa~~~   92 (106)
T d1i8ka_          79 -LSEDVGDYYCLQSF   92 (106)
T ss_dssp             -CGGGCEEEEEEECS
T ss_pred             -ccccCEEEeEecCc
Confidence             89999999998764

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=4e-06  Score=67.43  Aligned_cols=68  Identities=13%  Similarity=0.155  Sum_probs=47.5

Q ss_pred             cCCCCCCeEEEEEEecCCCC----CeEEEEeCCcccC---CCc---------ee---eecceEEEECCCCCCCCEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPV----PSYNWTRRGSPLP---RNA---------YF---ENFNRILTIPNVKVEDQGEYICR  742 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~----p~i~W~k~g~~l~---~~~---------~~---~~~~~~L~i~~v~~~d~G~Y~C~  742 (813)
                      +++..|++|+|.|.......    ..+.|.+++..+.   .+.         +.   ..++.+|+|.+++.+|+|.|.|.
T Consensus         4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C~   83 (105)
T d1dr9a1           4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECV   83 (105)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEE
T ss_pred             EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeEEEEE
Confidence            45678999999998764221    3688888876541   110         01   12345899999999999999999


Q ss_pred             EEcCCCc
Q psy14896        743 ASNDRSA  749 (813)
Q Consensus       743 a~N~~G~  749 (813)
                      +.+..+.
T Consensus        84 V~~~~~~   90 (105)
T d1dr9a1          84 VLKYEKD   90 (105)
T ss_dssp             EEECCTT
T ss_pred             EEeCCCC
Confidence            9865443

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.98  E-value=7.1e-06  Score=65.53  Aligned_cols=64  Identities=28%  Similarity=0.475  Sum_probs=46.2

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeC--CcccC------------CCcee----eecceEEEECCCCCCCCEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRR--GSPLP------------RNAYF----ENFNRILTIPNVKVEDQGEYICRA  743 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~--g~~l~------------~~~~~----~~~~~~L~i~~v~~~d~G~Y~C~a  743 (813)
                      ..+.+|++|+|+|...+.....+.|||.  |..+.            ...++    ......|+|.+++.+|+|.|.|.+
T Consensus        11 lsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyCa~   90 (106)
T d1i8ka_          11 LSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVGDYYCLQ   90 (106)
T ss_dssp             EECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             EEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccCEEEeEec
Confidence            5678999999999987666667999973  33221            11111    122457999999999999999987


Q ss_pred             Ec
Q psy14896        744 SN  745 (813)
Q Consensus       744 ~N  745 (813)
                      .+
T Consensus        91 ~~   92 (106)
T d1i8ka_          91 SF   92 (106)
T ss_dssp             CS
T ss_pred             Cc
Confidence            54

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.96  E-value=2.9e-05  Score=61.92  Aligned_cols=81  Identities=20%  Similarity=0.340  Sum_probs=50.1

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecc--ccccccc--ccccccCCCccEEee----CCeEEEcCC
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKED--YVQDRLV--ANLIDPLSDKRFTLS----GGNLIINDP  263 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g--~~l~~~~--~~~~~~~~~~~~~~~----~~~l~i~~~  263 (813)
                      ++..|..+.+.+|     ++|+|.|.........+.|||..  .......  ..........++...    +.+|.|.+.
T Consensus         3 ltQsP~~l~~~~G-----~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~   77 (106)
T d1a0ql1           3 LTQSPSSLSASLG-----GKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNL   77 (106)
T ss_dssp             EEEECSEEEECTT-----CCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSC
T ss_pred             eECcCCEEEECCC-----CCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhh
Confidence            4455777877777     77999999876666679999952  2211100  001111222333332    225788775


Q ss_pred             ccccCCeeEEEEeec
Q psy14896        264 RQVEDRGSYHCKASN  278 (813)
Q Consensus       264 ~~~~d~G~Y~C~a~n  278 (813)
                       +.+|+|.|.|.+.+
T Consensus        78 -~~~DsA~YyCa~~~   91 (106)
T d1a0ql1          78 -EPEDIATYYCLQYY   91 (106)
T ss_dssp             -CGGGCSEEEEEECS
T ss_pred             -cccCCEeEEEEEeC
Confidence             99999999998764

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.94  E-value=3.9e-05  Score=61.21  Aligned_cols=81  Identities=21%  Similarity=0.385  Sum_probs=50.4

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecc--ccccccc--ccccccCCCccEEee----CCeEEEcCC
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKED--YVQDRLV--ANLIDPLSDKRFTLS----GGNLIINDP  263 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g--~~l~~~~--~~~~~~~~~~~~~~~----~~~l~i~~~  263 (813)
                      ++..|..+.+.+|     ++|+|.|..++.....+.|||..  +......  ..........++...    +.+|.|.+.
T Consensus         4 ~tQsP~~ltv~~G-----~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~   78 (107)
T d1ospl1           4 MSQSSSSFSVSLG-----DRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSL   78 (107)
T ss_dssp             EECCCSEEEECTT-----CCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSC
T ss_pred             EEeeCCEEEECCC-----CCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEccc
Confidence            3445677877777     77999999876555679999942  2111100  011122333444443    235777775


Q ss_pred             ccccCCeeEEEEeec
Q psy14896        264 RQVEDRGSYHCKASN  278 (813)
Q Consensus       264 ~~~~d~G~Y~C~a~n  278 (813)
                       +.+|+|.|.|.+..
T Consensus        79 -~~~Dsa~YyCa~~~   92 (107)
T d1ospl1          79 -QTEDVATYFCQQYW   92 (107)
T ss_dssp             -CGGGCSEEEEEECS
T ss_pred             -ccccCCcEEEeecc
Confidence             89999999998764

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.93  E-value=1.1e-05  Score=66.51  Aligned_cols=63  Identities=29%  Similarity=0.542  Sum_probs=45.7

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeC--CcccCC------------C----------ceee-----ecceEEEECCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRR--GSPLPR------------N----------AYFE-----NFNRILTIPNVK  732 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~--g~~l~~------------~----------~~~~-----~~~~~L~i~~v~  732 (813)
                      ..+.+|++|+|+|.+.+...+.+.|||-  |..+..            .          .++.     ....+|+|.+++
T Consensus        11 ~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~L~I~~~~   90 (122)
T d1nezg_          11 MDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKYVLTLNKFS   90 (122)
T ss_dssp             EEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTEEEEEESSCC
T ss_pred             EEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCCEeEEEEcccc
Confidence            5678999999999998877788999982  322110            0          0110     112469999999


Q ss_pred             CCCCEEEEEEEE
Q psy14896        733 VEDQGEYICRAS  744 (813)
Q Consensus       733 ~~d~G~Y~C~a~  744 (813)
                      .+|+|.|.|.+.
T Consensus        91 ~~Dsg~YyCa~~  102 (122)
T d1nezg_          91 KENEGYYFCSVI  102 (122)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cCCCEEEEeeEe
Confidence            999999999875

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=1.6e-05  Score=61.42  Aligned_cols=86  Identities=21%  Similarity=0.240  Sum_probs=55.9

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe-eCCeEEEcCCcccc
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL-SGGNLIINDPRQVE  267 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~  267 (813)
                      +|.+...|... |..|     ++|+|.|+... +...+.|||+|..-..           .+... ....+.|.+ ++.+
T Consensus         4 kPsLsa~P~~~-V~~G-----~~VTL~C~~~~-~~~~f~L~Keg~~~~~-----------~~~~~~~~a~F~i~~-v~~~   64 (93)
T d1olla2           4 TPTLSVHPGPE-VISG-----EKVTFYCRLDT-ATSMFLLLKEGRSSHV-----------QRGYGKVQAEFPLGP-VTTA   64 (93)
T ss_dssp             CCEEEEESCSE-EETT-----CEEEEEEECSS-SCSEEEEEEESSSCEE-----------EEEECSSEEEEEEEE-CCGG
T ss_pred             CCEEEEeCCCc-ccCC-----CcEEEEECCCC-CCCEEEEEECCCccce-----------eecCCCceeEEEecc-cChh
Confidence            57888888655 4556     66999999864 5679999999863210           00001 122456666 4899


Q ss_pred             CCeeEEEEee--cCceeeEeeeeEEeee
Q psy14896        268 DRGSYHCKAS--NKFGSIISESVQLAFG  293 (813)
Q Consensus       268 d~G~Y~C~a~--n~~g~~~s~~~~l~v~  293 (813)
                      |+|.|+|...  +...+..|..+.|.|.
T Consensus        65 ~~G~Y~C~~~~~~~~wS~~SdpLeL~Vt   92 (93)
T d1olla2          65 HRGTYRCFGSYNNHAWSFPSEPVKLLVT   92 (93)
T ss_dssp             GCEEEEEECEEETTEECCCCCCEEEEEE
T ss_pred             cCceEEEEeECCCCCcCCCCCCEEEEee
Confidence            9999999754  2223344667777764

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.91  E-value=4.1e-05  Score=60.97  Aligned_cols=81  Identities=22%  Similarity=0.423  Sum_probs=50.0

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeeccc--ccccccc--cccccCCCccEEee--C--CeEEEcCC
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDY--VQDRLVA--NLIDPLSDKRFTLS--G--GNLIINDP  263 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~--~l~~~~~--~~~~~~~~~~~~~~--~--~~l~i~~~  263 (813)
                      ++..|..+.+.+|     ++|+|.|...+.-...+.|||...  ...-...  .........++...  +  ..|.|.+.
T Consensus         3 ltQ~P~sl~~~~G-----~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~   77 (106)
T d1op3k1           3 MTQSPSTLSASVG-----DTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGL   77 (106)
T ss_dssp             EEEECSEEEECTT-----CEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESC
T ss_pred             EeCcCCeEEECCC-----CCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccc
Confidence            4556788888777     779999998765556799998632  1111100  01111222333332  2  24777775


Q ss_pred             ccccCCeeEEEEeec
Q psy14896        264 RQVEDRGSYHCKASN  278 (813)
Q Consensus       264 ~~~~d~G~Y~C~a~n  278 (813)
                       +.+|+|.|.|.+..
T Consensus        78 -~~~Dsa~YyCa~~~   91 (106)
T d1op3k1          78 -QFDDFATYHCQHYA   91 (106)
T ss_dssp             -CGGGCSEEEEEEEC
T ss_pred             -cccCCCcEeeeeCC
Confidence             99999999998764

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.91  E-value=5.1e-05  Score=60.67  Aligned_cols=81  Identities=22%  Similarity=0.325  Sum_probs=50.4

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeec--cccccccccc--ccccCCCccEEee----CCeEEEcCC
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKE--DYVQDRLVAN--LIDPLSDKRFTLS----GGNLIINDP  263 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~--g~~l~~~~~~--~~~~~~~~~~~~~----~~~l~i~~~  263 (813)
                      ++..|..+.+.+|     ++|+|.|.........+.|||.  ++........  ........++...    ..+|.|.+.
T Consensus         4 ~tQsP~~l~v~~G-----~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l   78 (107)
T d1kcvl1           4 MTQSPKSMGMSVG-----EAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSV   78 (107)
T ss_dssp             EEESCSEEEEETT-----CCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             EECcCCEEeECCC-----CCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhh
Confidence            4556777888777     7799999987666667999985  3322111100  0011122333322    234777775


Q ss_pred             ccccCCeeEEEEeec
Q psy14896        264 RQVEDRGSYHCKASN  278 (813)
Q Consensus       264 ~~~~d~G~Y~C~a~n  278 (813)
                       +.+|+|.|.|.+..
T Consensus        79 -~~~DSa~YyCa~~~   92 (107)
T d1kcvl1          79 -QADDDADYYCGQSY   92 (107)
T ss_dssp             -CGGGCEEEEEEECS
T ss_pred             -eecCCceEEEEecC
Confidence             99999999998764

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.90  E-value=1.6e-05  Score=63.50  Aligned_cols=63  Identities=25%  Similarity=0.368  Sum_probs=45.8

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeC--CcccC------------CCce----eeecceEEEECCCCCCCCEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRR--GSPLP------------RNAY----FENFNRILTIPNVKVEDQGEYICRA  743 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~--g~~l~------------~~~~----~~~~~~~L~i~~v~~~d~G~Y~C~a  743 (813)
                      +.+.+|++|+|+|.........+.|||-  |+.+.            ...+    .......|+|.+++.+|+|.|.|.+
T Consensus        11 ~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~   90 (107)
T d3cx5k1          11 LAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDIATYFCQH   90 (107)
T ss_dssp             CCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCCSEEEEEE
T ss_pred             EEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCCCcEEeee
Confidence            5688999999999988777667999983  22210            0011    1223457999999999999999976


Q ss_pred             E
Q psy14896        744 S  744 (813)
Q Consensus       744 ~  744 (813)
                      .
T Consensus        91 ~   91 (107)
T d3cx5k1          91 H   91 (107)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.90  E-value=6.3e-06  Score=65.67  Aligned_cols=64  Identities=25%  Similarity=0.431  Sum_probs=45.9

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeC--CcccC------C------Cc----eeeecceEEEECCCCCCCCEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRR--GSPLP------R------NA----YFENFNRILTIPNVKVEDQGEYICRA  743 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~--g~~l~------~------~~----~~~~~~~~L~i~~v~~~d~G~Y~C~a  743 (813)
                      ..+.+|++|+|+|.........+.|||-  |..+.      .      ..    ........|+|.+++.+|+|.|.|.+
T Consensus         8 l~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~   87 (103)
T d8faba1           8 VSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYYCQA   87 (103)
T ss_dssp             EEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEEEEE
T ss_pred             EEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEEeee
Confidence            5678999999999988666567999983  22211      0      00    11222457999999999999999977


Q ss_pred             Ec
Q psy14896        744 SN  745 (813)
Q Consensus       744 ~N  745 (813)
                      .+
T Consensus        88 ~~   89 (103)
T d8faba1          88 WD   89 (103)
T ss_dssp             EE
T ss_pred             cC
Confidence            64

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=1.5e-05  Score=64.66  Aligned_cols=78  Identities=13%  Similarity=0.203  Sum_probs=48.8

Q ss_pred             cCCCCCCeEEEEEEecCCCC---CeEEE--EeCCcccC----CC--------ce------eeecceEEEECCCCCCCCEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPV---PSYNW--TRRGSPLP----RN--------AY------FENFNRILTIPNVKVEDQGE  738 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~---p~i~W--~k~g~~l~----~~--------~~------~~~~~~~L~i~~v~~~d~G~  738 (813)
                      +.+..|++|+|.|.+...+.   ..+.|  .+++..+.    .+        .+      ....+.+|+|.+++.+|+|.
T Consensus         4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~   83 (110)
T d1ncna_           4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGL   83 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEE
T ss_pred             EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEE
Confidence            45678999999999864332   23444  44333210    00        01      12334579999999999999


Q ss_pred             EEEEEEcCC--Cc---eEEEEEEEEE
Q psy14896        739 YICRASNDR--SA---LESSVTISIQ  759 (813)
Q Consensus       739 Y~C~a~N~~--G~---~~~~~~l~V~  759 (813)
                      |.|.+...-  |.   ....+.|.|.
T Consensus        84 Y~C~V~~~~~~~~~~~~~~~~~L~V~  109 (110)
T d1ncna_          84 YQCIIHHKKPTGMIRIHQMNSELSVL  109 (110)
T ss_dssp             EEEEEEEECSSSEEEEEEEEEEEEEE
T ss_pred             EEEEEEecCCCceEEEEcceEEEEEE
Confidence            999996443  33   2456677764

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.89  E-value=9.4e-06  Score=64.69  Aligned_cols=64  Identities=20%  Similarity=0.363  Sum_probs=46.5

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeC--CcccC----C--------Ccee----eecceEEEECCCCCCCCEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRR--GSPLP----R--------NAYF----ENFNRILTIPNVKVEDQGEYICRA  743 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~--g~~l~----~--------~~~~----~~~~~~L~i~~v~~~d~G~Y~C~a  743 (813)
                      +.+.+|++|+|+|.........+.|||.  |+.+.    .        ..++    ......|.|.+++.+|+|.|.|.+
T Consensus        11 ~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~   90 (107)
T d1c5cl1          11 LSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFADYYCLQ   90 (107)
T ss_dssp             EEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEEE
T ss_pred             EEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCeEEEEec
Confidence            5578999999999998777778999983  33210    0        0011    122457999999999999999977


Q ss_pred             Ec
Q psy14896        744 SN  745 (813)
Q Consensus       744 ~N  745 (813)
                      .+
T Consensus        91 ~~   92 (107)
T d1c5cl1          91 YA   92 (107)
T ss_dssp             CS
T ss_pred             Cc
Confidence            54

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.88  E-value=1.1e-05  Score=65.62  Aligned_cols=67  Identities=18%  Similarity=0.349  Sum_probs=48.1

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeC--CcccC------CC-c-----ee------eecceEEEECCCCCCCCEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRR--GSPLP------RN-A-----YF------ENFNRILTIPNVKVEDQGEYIC  741 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~--g~~l~------~~-~-----~~------~~~~~~L~i~~v~~~d~G~Y~C  741 (813)
                      +.+.+|++|+|+|.+.+.....+.|||-  |+.+.      .+ .     +.      ......|+|.+++.+|+|.|.|
T Consensus        10 v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsg~YyC   89 (113)
T d2bnqd1          10 LSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDSATYLC   89 (113)
T ss_dssp             EEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEE
T ss_pred             EEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCCCCcEEeE
Confidence            5678999999999998776678999982  33211      00 0     00      1223479999999999999999


Q ss_pred             EEEcCCC
Q psy14896        742 RASNDRS  748 (813)
Q Consensus       742 ~a~N~~G  748 (813)
                      .+....+
T Consensus        90 a~~~~~~   96 (113)
T d2bnqd1          90 AVRPTSG   96 (113)
T ss_dssp             EEEESSS
T ss_pred             eEecCCC
Confidence            9975443

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.87  E-value=1.5e-05  Score=63.72  Aligned_cols=65  Identities=23%  Similarity=0.370  Sum_probs=45.9

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeC--Cccc----CCC--------ce----eeecceEEEECCCCCCCCEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRR--GSPL----PRN--------AY----FENFNRILTIPNVKVEDQGEYICRA  743 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~--g~~l----~~~--------~~----~~~~~~~L~i~~v~~~d~G~Y~C~a  743 (813)
                      ..+.+|++|+|+|...+.....+.|||-  |+.+    ...        ..    .......|+|.+++.+|+|.|.|.+
T Consensus        11 l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~YyCA~   90 (108)
T d1jhll_          11 LVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFAMYICQQ   90 (108)
T ss_dssp             EEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCSEEEEEE
T ss_pred             EEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccceEEEEee
Confidence            5678999999999998766668999983  2211    000        01    1122347999999999999999976


Q ss_pred             EcC
Q psy14896        744 SND  746 (813)
Q Consensus       744 ~N~  746 (813)
                      .+.
T Consensus        91 ~~~   93 (108)
T d1jhll_          91 HNE   93 (108)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            553

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.87  E-value=5.2e-05  Score=60.48  Aligned_cols=81  Identities=21%  Similarity=0.408  Sum_probs=49.8

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeeccc--ccccccc--cccccCCCccEEee--C--CeEEEcCC
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDY--VQDRLVA--NLIDPLSDKRFTLS--G--GNLIINDP  263 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~--~l~~~~~--~~~~~~~~~~~~~~--~--~~l~i~~~  263 (813)
                      ++..|..+.+.+|     ++|+|.|.........+.|||...  .+.....  .........++...  +  -.|.|.+.
T Consensus         4 ~tQ~P~sl~~~~G-----~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l   78 (107)
T d1tjgl1           4 LTQSPSSLSASVG-----DRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTL   78 (107)
T ss_dssp             EEEECSEEEECTT-----CCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSC
T ss_pred             EEeeCCEEEECCC-----CCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccc
Confidence            4555778888777     779999999765567899998532  2211110  01111222333332  2  24777775


Q ss_pred             ccccCCeeEEEEeec
Q psy14896        264 RQVEDRGSYHCKASN  278 (813)
Q Consensus       264 ~~~~d~G~Y~C~a~n  278 (813)
                       +.+|+|.|.|.+.+
T Consensus        79 -~~~DsA~YyCa~~~   92 (107)
T d1tjgl1          79 -RPEDFATYYCQQLH   92 (107)
T ss_dssp             -CGGGCSEEEEEECS
T ss_pred             -eeCcCceEEEEECc
Confidence             89999999997654

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=3.8e-05  Score=61.80  Aligned_cols=65  Identities=18%  Similarity=0.290  Sum_probs=43.7

Q ss_pred             cCCCCCCeEEEEEEecCCC--CCeEEEEeC--CcccC------------CCcee------eecceEEEECCCCCCCCEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYP--VPSYNWTRR--GSPLP------------RNAYF------ENFNRILTIPNVKVEDQGEY  739 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P--~p~i~W~k~--g~~l~------------~~~~~------~~~~~~L~i~~v~~~d~G~Y  739 (813)
                      +.+.+|++|+|.|......  ...+.|+|.  +....            ...++      ......|+|.+++.+|+|.|
T Consensus         6 v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG~Y   85 (108)
T d1hkfa_           6 LQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGHY   85 (108)
T ss_dssp             EEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             EEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCEEE
Confidence            4568999999999876332  346789983  22110            00111      12234799999999999999


Q ss_pred             EEEEEcC
Q psy14896        740 ICRASND  746 (813)
Q Consensus       740 ~C~a~N~  746 (813)
                      .|.+...
T Consensus        86 ~C~v~~~   92 (108)
T d1hkfa_          86 WCRIYRP   92 (108)
T ss_dssp             EEEEECT
T ss_pred             EEEEecC
Confidence            9998754

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.85  E-value=2.6e-05  Score=62.87  Aligned_cols=64  Identities=23%  Similarity=0.447  Sum_probs=45.2

Q ss_pred             cCCCCCCeEEEEEEecCCC--CCeEEEEeC--CcccC----C--------Ccee----eecceEEEECCCCCCCCEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYP--VPSYNWTRR--GSPLP----R--------NAYF----ENFNRILTIPNVKVEDQGEYIC  741 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P--~p~i~W~k~--g~~l~----~--------~~~~----~~~~~~L~i~~v~~~d~G~Y~C  741 (813)
                      +.+.+|++|+|.|.+.+.-  ...+.|||-  |..+.    .        ..++    ......|.|.+++.+|+|.|.|
T Consensus        10 ~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~YyC   89 (114)
T d2rhea_          10 ASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADYYC   89 (114)
T ss_dssp             EEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             EEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceEEE
Confidence            6778999999999987543  457999984  22110    0        0011    1224579999999999999999


Q ss_pred             EEEc
Q psy14896        742 RASN  745 (813)
Q Consensus       742 ~a~N  745 (813)
                      .+..
T Consensus        90 A~~~   93 (114)
T d2rhea_          90 AAWN   93 (114)
T ss_dssp             EEEE
T ss_pred             eecC
Confidence            8864

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.85  E-value=1.5e-05  Score=63.79  Aligned_cols=63  Identities=25%  Similarity=0.439  Sum_probs=45.3

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeC--CcccC------------CCcee----eecceEEEECCCCCCCCEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRR--GSPLP------------RNAYF----ENFNRILTIPNVKVEDQGEYICRA  743 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~--g~~l~------------~~~~~----~~~~~~L~i~~v~~~d~G~Y~C~a  743 (813)
                      +.+.+|++|+|.|...+.....+.|||-  |..+.            ...++    ......|+|.+++.+|+|.|.|.+
T Consensus        10 ~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~   89 (106)
T d1lk3l1          10 LTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFCQQ   89 (106)
T ss_dssp             EEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             EEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCccccc
Confidence            5678999999999998766668999973  22110            00111    122357999999999999999966


Q ss_pred             E
Q psy14896        744 S  744 (813)
Q Consensus       744 ~  744 (813)
                      .
T Consensus        90 ~   90 (106)
T d1lk3l1          90 S   90 (106)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=4.3e-05  Score=54.12  Aligned_cols=58  Identities=21%  Similarity=0.363  Sum_probs=43.5

Q ss_pred             CCCCeEEEEEEecCCCCC--eEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEc
Q psy14896        685 KAGDKVRLECVAFGYPVP--SYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASN  745 (813)
Q Consensus       685 ~~G~~v~l~C~~~g~P~p--~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N  745 (813)
                      ..|..+.|+|.....+.+  .-.|.|+|+.|..+.. ....-.++|..  .+|+|+|.|+..+
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~-~~~~tey~V~~--~D~SGeY~CVFl~   69 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDAL-PGQKTEFKVDS--DDQWGEYSCVFLP   69 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTC-CCSEEEEEECG--GGCCEEEEEEEES
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCC-CCCceEEEEec--CCCCceEEEEEcC
Confidence            457888999999865543  6899999999987642 22334577764  7899999999653

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.84  E-value=2.9e-05  Score=63.09  Aligned_cols=81  Identities=25%  Similarity=0.400  Sum_probs=49.8

Q ss_pred             eeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeeccc--cccccccc--ccccCCCccEEee------CCeEEEcC
Q psy14896        193 IKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDY--VQDRLVAN--LIDPLSDKRFTLS------GGNLIIND  262 (813)
Q Consensus       193 ~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~--~l~~~~~~--~~~~~~~~~~~~~------~~~l~i~~  262 (813)
                      +..|..+.+.+|     ++|+|.|.....+...+.|||...  ........  .-......++...      ..+|.|.+
T Consensus         4 ~Q~P~~~~~~~G-----~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~   78 (114)
T d2cdea1           4 EQSPQSLIILEG-----KNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITA   78 (114)
T ss_dssp             EEECSEEEEETT-----CCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECS
T ss_pred             EeeCCEEEEeCC-----CCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcc
Confidence            445777888777     669999999776777899998542  11100000  0001111222221      22478877


Q ss_pred             CccccCCeeEEEEeecC
Q psy14896        263 PRQVEDRGSYHCKASNK  279 (813)
Q Consensus       263 ~~~~~d~G~Y~C~a~n~  279 (813)
                      . +.+|+|.|.|.+...
T Consensus        79 ~-~~~Dsg~Y~Ca~~~~   94 (114)
T d2cdea1          79 S-QLSDSASYICVVSDR   94 (114)
T ss_dssp             C-CGGGCSEEEEEEECS
T ss_pred             c-ChhhCcccceeeecC
Confidence            5 899999999999763

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.84  E-value=6.5e-05  Score=59.95  Aligned_cols=81  Identities=25%  Similarity=0.388  Sum_probs=50.0

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecc--ccccccccc--ccccCCCccEEee----CCeEEEcCC
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKED--YVQDRLVAN--LIDPLSDKRFTLS----GGNLIINDP  263 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g--~~l~~~~~~--~~~~~~~~~~~~~----~~~l~i~~~  263 (813)
                      ++..|..+.+.+|     ++|+|+|.........+.|||..  +.+.-....  ........++...    +.+|.|.+.
T Consensus         4 ~tQ~p~~l~v~~G-----~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~   78 (107)
T d1j1pl_           4 LTQSPATLSVTPG-----NSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSV   78 (107)
T ss_dssp             EEEECSEEEECTT-----CCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSC
T ss_pred             EECcCCeEEECCC-----CCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEccc
Confidence            4455777888777     77999999876556689999864  222111100  0011122333332    235777775


Q ss_pred             ccccCCeeEEEEeec
Q psy14896        264 RQVEDRGSYHCKASN  278 (813)
Q Consensus       264 ~~~~d~G~Y~C~a~n  278 (813)
                       +.+|+|.|.|.+.+
T Consensus        79 -~~~Dsa~YyCa~~~   92 (107)
T d1j1pl_          79 -ETEDFGMYFCQQAN   92 (107)
T ss_dssp             -CGGGCEEEEEEECS
T ss_pred             -CcCCCEEEEEEcCC
Confidence             89999999997764

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.83  E-value=1.5e-05  Score=63.75  Aligned_cols=64  Identities=25%  Similarity=0.401  Sum_probs=46.2

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeC--CcccC------------CCcee----eecceEEEECCCCCCCCEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRR--GSPLP------------RNAYF----ENFNRILTIPNVKVEDQGEYICRA  743 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~--g~~l~------------~~~~~----~~~~~~L~i~~v~~~d~G~Y~C~a  743 (813)
                      ..+.+|++|+|+|.........+.|||.  |+.+.            ...++    ......|+|.+++.+|+|.|.|.+
T Consensus        11 l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa~YyCa~   90 (107)
T d1j1pl_          11 LSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFCQQ   90 (107)
T ss_dssp             EEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             EEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCEEEEEEc
Confidence            5678999999999987666668999984  33210            00111    222457999999999999999977


Q ss_pred             Ec
Q psy14896        744 SN  745 (813)
Q Consensus       744 ~N  745 (813)
                      .+
T Consensus        91 ~~   92 (107)
T d1j1pl_          91 AN   92 (107)
T ss_dssp             CS
T ss_pred             CC
Confidence            54

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=1.7e-05  Score=61.21  Aligned_cols=80  Identities=10%  Similarity=0.080  Sum_probs=54.2

Q ss_pred             CceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCccEEEccCccEEEeeeeecCCeeeEEEEeeeccccCCCCCc
Q psy14896        304 PEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPF  383 (813)
Q Consensus       304 ~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~  383 (813)
                      ...+..|+.++|.|..  ..+...+.|+|+|......   +........+.|.+|+.+|+|.|+|.........+.-|+.
T Consensus        12 ~~~V~~G~~VTL~C~~--~~~~~~f~L~Keg~~~~~~---~~~~~~~a~F~i~~v~~~~~G~Y~C~~~~~~~~wS~~Sdp   86 (93)
T d1olla2          12 GPEVISGEKVTFYCRL--DTATSMFLLLKEGRSSHVQ---RGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEP   86 (93)
T ss_dssp             CSEEETTCEEEEEEEC--SSSCSEEEEEEESSSCEEE---EEECSSEEEEEEEECCGGGCEEEEEECEEETTEECCCCCC
T ss_pred             CCcccCCCcEEEEECC--CCCCCEEEEEECCCcccee---ecCCCceeEEEecccChhcCceEEEEeECCCCCcCCCCCC
Confidence            3567889999999994  3466899999998753222   1111223479999999999999999754432223344555


Q ss_pred             eeeEE
Q psy14896        384 FPLKV  388 (813)
Q Consensus       384 ~~l~v  388 (813)
                      +.|.|
T Consensus        87 LeL~V   91 (93)
T d1olla2          87 VKLLV   91 (93)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            66555

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.83  E-value=1.4e-05  Score=64.06  Aligned_cols=64  Identities=25%  Similarity=0.399  Sum_probs=46.1

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeC--CcccC------------CCcee----eecceEEEECCCCCCCCEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRR--GSPLP------------RNAYF----ENFNRILTIPNVKVEDQGEYICRA  743 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~--g~~l~------------~~~~~----~~~~~~L~i~~v~~~d~G~Y~C~a  743 (813)
                      ..+.+|++|+|+|.........+.|||-  |+.+.            ...++    ......|+|.+++.+|+|.|.|.+
T Consensus        11 l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DSa~YyCa~   90 (107)
T d1kcvl1          11 MGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDADYYCGQ   90 (107)
T ss_dssp             EEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             EeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCCceEEEEe
Confidence            5578999999999998776668999983  22210            01111    123457999999999999999987


Q ss_pred             Ec
Q psy14896        744 SN  745 (813)
Q Consensus       744 ~N  745 (813)
                      ..
T Consensus        91 ~~   92 (107)
T d1kcvl1          91 SY   92 (107)
T ss_dssp             CS
T ss_pred             cC
Confidence            53

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.82  E-value=1.2e-05  Score=64.96  Aligned_cols=65  Identities=18%  Similarity=0.296  Sum_probs=45.3

Q ss_pred             cCCCCCCeEEEEEEecCC-CCCeEEEEeC--CcccC-------CC-----cee----eecceEEEECCCCCCCCEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGY-PVPSYNWTRR--GSPLP-------RN-----AYF----ENFNRILTIPNVKVEDQGEYICR  742 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~-P~p~i~W~k~--g~~l~-------~~-----~~~----~~~~~~L~i~~v~~~d~G~Y~C~  742 (813)
                      +.+.+|++|+|.|..++. ....+.|||.  |+.+.       .+     .+.    ......|.|.+++.+|+|.|.|.
T Consensus         8 vsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa   87 (110)
T d2esvd1           8 MDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVYYCI   87 (110)
T ss_dssp             EEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEEEEE
T ss_pred             EEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEEEEE
Confidence            677899999999998753 3456899983  33211       00     011    12245699999999999999998


Q ss_pred             EEcC
Q psy14896        743 ASND  746 (813)
Q Consensus       743 a~N~  746 (813)
                      +...
T Consensus        88 ~~~~   91 (110)
T d2esvd1          88 VVRS   91 (110)
T ss_dssp             EEES
T ss_pred             EeCC
Confidence            8643

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.82  E-value=3.3e-05  Score=61.63  Aligned_cols=81  Identities=25%  Similarity=0.365  Sum_probs=48.8

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeec--cccccccccc--ccccCCCccEEee----CCeEEEcCC
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKE--DYVQDRLVAN--LIDPLSDKRFTLS----GGNLIINDP  263 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~--g~~l~~~~~~--~~~~~~~~~~~~~----~~~l~i~~~  263 (813)
                      ++..|..+.+.+|     ++|+|.|.....-...+.|||.  |+........  ........++...    +..|.|.+.
T Consensus         4 ltQ~p~~l~~~~G-----~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~   78 (107)
T d1mexl1           4 MTQSQKFMSTSLG-----NRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNV   78 (107)
T ss_dssp             EECCCSEEEECTT-----SCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSC
T ss_pred             EEcCCCeEEECCC-----CCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechh
Confidence            4445666777676     7799999986655567999974  3322111110  1111122344432    234677775


Q ss_pred             ccccCCeeEEEEeec
Q psy14896        264 RQVEDRGSYHCKASN  278 (813)
Q Consensus       264 ~~~~d~G~Y~C~a~n  278 (813)
                       +.+|+|.|.|.+..
T Consensus        79 -~~~DsA~YyCa~~~   92 (107)
T d1mexl1          79 -QSEDLAEYFCQQYN   92 (107)
T ss_dssp             -CGGGCSEEEEEECS
T ss_pred             -heecceeEEEeECC
Confidence             99999999998654

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.81  E-value=1.6e-05  Score=63.56  Aligned_cols=64  Identities=22%  Similarity=0.385  Sum_probs=46.2

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeC--CcccC------------CCcee----eecceEEEECCCCCCCCEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRR--GSPLP------------RNAYF----ENFNRILTIPNVKVEDQGEYICRA  743 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~--g~~l~------------~~~~~----~~~~~~L~i~~v~~~d~G~Y~C~a  743 (813)
                      ..+.+|++|+|.|...+.....+.|||-  |..+.            ...++    ......|+|.+++.+|+|.|.|.+
T Consensus        11 ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyCa~   90 (107)
T d1ospl1          11 FSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVATYFCQQ   90 (107)
T ss_dssp             EEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCSEEEEEE
T ss_pred             EEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCCcEEEee
Confidence            5678999999999988766567999983  22211            00111    223467999999999999999987


Q ss_pred             Ec
Q psy14896        744 SN  745 (813)
Q Consensus       744 ~N  745 (813)
                      .+
T Consensus        91 ~~   92 (107)
T d1ospl1          91 YW   92 (107)
T ss_dssp             CS
T ss_pred             cc
Confidence            54

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.80  E-value=0.00011  Score=58.35  Aligned_cols=82  Identities=26%  Similarity=0.440  Sum_probs=49.6

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeeccc--ccccccc--cccccCCCccEEee-CC---eEEEcCC
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDY--VQDRLVA--NLIDPLSDKRFTLS-GG---NLIINDP  263 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~--~l~~~~~--~~~~~~~~~~~~~~-~~---~l~i~~~  263 (813)
                      ++..|..+.+.+|     ++|+|.|...+.....+.|||.-.  .......  .........++... ++   +|.|.+.
T Consensus         4 vtQ~P~~l~~~~G-----~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l   78 (108)
T d1jhll_           4 LTQSPSYLVASPG-----ETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSL   78 (108)
T ss_dssp             EEEECSEEEECTT-----SCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSC
T ss_pred             EEccCCeEEecCC-----CCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeee
Confidence            3445677777777     779999999765666899998532  1111100  01111112222222 22   5788875


Q ss_pred             ccccCCeeEEEEeecC
Q psy14896        264 RQVEDRGSYHCKASNK  279 (813)
Q Consensus       264 ~~~~d~G~Y~C~a~n~  279 (813)
                       +.+|+|.|.|.+.+.
T Consensus        79 -~~~Dsa~YyCA~~~~   93 (108)
T d1jhll_          79 -EPEDFAMYICQQHNE   93 (108)
T ss_dssp             -CTTCCSEEEEEECSS
T ss_pred             -EeccceEEEEeeCCC
Confidence             899999999976653

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.80  E-value=3.3e-05  Score=62.66  Aligned_cols=65  Identities=20%  Similarity=0.388  Sum_probs=45.0

Q ss_pred             cCCCCCCeEEEEEEecCC-CCCeEEEEeC--CcccC-------------CCceee------ecceEEEECCCCCCCCEEE
Q psy14896        682 EAPKAGDKVRLECVAFGY-PVPSYNWTRR--GSPLP-------------RNAYFE------NFNRILTIPNVKVEDQGEY  739 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~-P~p~i~W~k~--g~~l~-------------~~~~~~------~~~~~L~i~~v~~~d~G~Y  739 (813)
                      ..+.+|++|+|.|.+.+. ....+.|||-  |..+.             ...++.      .....|.|.+++.+|+|.|
T Consensus         9 l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y   88 (114)
T d3bp5a1           9 LTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIY   88 (114)
T ss_dssp             EEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGGGCEEE
T ss_pred             EEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCcCCCeEE
Confidence            567899999999998754 3457899983  32110             111111      1124699999999999999


Q ss_pred             EEEEEcC
Q psy14896        740 ICRASND  746 (813)
Q Consensus       740 ~C~a~N~  746 (813)
                      .|.+...
T Consensus        89 yCa~~~~   95 (114)
T d3bp5a1          89 LCGAISL   95 (114)
T ss_dssp             EEEEECS
T ss_pred             EEEEEeC
Confidence            9988654

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.79  E-value=1.9e-05  Score=64.40  Aligned_cols=68  Identities=22%  Similarity=0.338  Sum_probs=46.7

Q ss_pred             cCCCCCCeEEEEEEecCC-CCCeEEEEe--CCcccC------CC---------ceee------ecceEEEECCCCCCCCE
Q psy14896        682 EAPKAGDKVRLECVAFGY-PVPSYNWTR--RGSPLP------RN---------AYFE------NFNRILTIPNVKVEDQG  737 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~-P~p~i~W~k--~g~~l~------~~---------~~~~------~~~~~L~i~~v~~~d~G  737 (813)
                      ..+.+|++|+|.|...+. ....+.|||  .|..+.      ..         .++.      .....|+|.+++.+|+|
T Consensus        10 ~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg   89 (116)
T d1tvda_          10 QTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRTEDSA   89 (116)
T ss_dssp             EEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCGGGCE
T ss_pred             EEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCccccccc
Confidence            567899999999988643 456899998  232210      00         1111      11246999999999999


Q ss_pred             EEEEEEEcCCCc
Q psy14896        738 EYICRASNDRSA  749 (813)
Q Consensus       738 ~Y~C~a~N~~G~  749 (813)
                      .|.|.+....+.
T Consensus        90 ~YyCa~~~~~~~  101 (116)
T d1tvda_          90 TYYCAFTLPPPT  101 (116)
T ss_dssp             EEEEEEECTTTT
T ss_pred             cceeeEecCCCC
Confidence            999988765443

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=1.2e-05  Score=62.62  Aligned_cols=82  Identities=13%  Similarity=0.110  Sum_probs=53.4

Q ss_pred             ceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCccEEEccCccEEEeeeeecCCeeeEEEEeeeccccCCCCCce
Q psy14896        305 EIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFF  384 (813)
Q Consensus       305 ~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~  384 (813)
                      ..+..|+.++|.|..  ..+...+.++|+|..................+.|.+++.+|+|.|+|.........+..|..+
T Consensus        13 ~~V~~G~~VTL~C~~--~~~~~~f~L~keg~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~~~S~~Sd~l   90 (96)
T d1ugna1          13 SVITQGSPVTLRCQG--GQETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPL   90 (96)
T ss_dssp             SEEETTCCEEEEEEC--CTTCCCEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEETTTEECCCCCCE
T ss_pred             CccCCCCcEEEEEeC--CCCCCEEEEEECCCCcccEEEccCCCCCEEEEEEEecCHHHCCeEEEEEeCCCCCccccCCCE
Confidence            557899999999994  346678899998864221111110111234799999999999999998754322233445555


Q ss_pred             eeEE
Q psy14896        385 PLKV  388 (813)
Q Consensus       385 ~l~v  388 (813)
                      .|.|
T Consensus        91 eL~V   94 (96)
T d1ugna1          91 ELVV   94 (96)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5555

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=6e-05  Score=58.54  Aligned_cols=65  Identities=15%  Similarity=0.359  Sum_probs=46.1

Q ss_pred             CCCCeEEEEEEecC-CCCCeEEEEeCCcccCCCceee---------ecceEEEECCCCCCCCEEEEEEEEcCCCceEE
Q psy14896        685 KAGDKVRLECVAFG-YPVPSYNWTRRGSPLPRNAYFE---------NFNRILTIPNVKVEDQGEYICRASNDRSALES  752 (813)
Q Consensus       685 ~~G~~v~l~C~~~g-~P~p~i~W~k~g~~l~~~~~~~---------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~  752 (813)
                      ..|+.++|.|.+.| +|.|.|+|++||+.+.......         .-.+.|.|.   ..+...|+|.+.+..-....
T Consensus        14 ~s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~---~~~~~~~tC~V~h~~l~~~~   88 (95)
T d1dr9a2          14 PTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGHLRVNQ   88 (95)
T ss_dssp             SSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEE---TTSCEEEEEEEEETTCCEEE
T ss_pred             CCCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEcc---CCccceEEEEEEecCCCCcE
Confidence            35788999999996 6999999999999886543211         112356664   34567999999987544433

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.78  E-value=2.2e-05  Score=62.91  Aligned_cols=63  Identities=24%  Similarity=0.408  Sum_probs=45.2

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeC--Ccc---c-CCC--------cee----eecceEEEECCCCCCCCEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRR--GSP---L-PRN--------AYF----ENFNRILTIPNVKVEDQGEYICRA  743 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~--g~~---l-~~~--------~~~----~~~~~~L~i~~v~~~d~G~Y~C~a  743 (813)
                      ..+.+|++|+|.|.........+.|||.  |+.   | ...        .++    ......|+|.+++.+|+|.|.|.+
T Consensus        11 l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DSa~YyCA~   90 (109)
T d1mqkl_          11 LSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFGSYYCQH   90 (109)
T ss_dssp             EEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             EEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCCeeEEEee
Confidence            5578899999999998666667999983  221   1 000        111    222457999999999999999987


Q ss_pred             E
Q psy14896        744 S  744 (813)
Q Consensus       744 ~  744 (813)
                      .
T Consensus        91 ~   91 (109)
T d1mqkl_          91 H   91 (109)
T ss_dssp             C
T ss_pred             e
Confidence            5

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.78  E-value=2e-05  Score=62.84  Aligned_cols=64  Identities=20%  Similarity=0.354  Sum_probs=45.8

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeC--CcccC------------CCcee----eecceEEEECCCCCCCCEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRR--GSPLP------------RNAYF----ENFNRILTIPNVKVEDQGEYICRA  743 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~--g~~l~------------~~~~~----~~~~~~L~i~~v~~~d~G~Y~C~a  743 (813)
                      ..+.+|++|+|.|...+.-...+.|||-  |+.+.            ...++    ......|+|.+++.+|+|.|.|.+
T Consensus        10 l~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~   89 (106)
T d1op3k1          10 LSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFATYHCQH   89 (106)
T ss_dssp             EEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCSEEEEEE
T ss_pred             EEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCCcEeeee
Confidence            5678999999999988655567999984  22110            00111    222357999999999999999987


Q ss_pred             Ec
Q psy14896        744 SN  745 (813)
Q Consensus       744 ~N  745 (813)
                      ..
T Consensus        90 ~~   91 (106)
T d1op3k1          90 YA   91 (106)
T ss_dssp             EC
T ss_pred             CC
Confidence            64

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.78  E-value=1.5e-05  Score=65.02  Aligned_cols=65  Identities=25%  Similarity=0.349  Sum_probs=46.3

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeC--CcccC------C-C------cee------eecceEEEECCCCCCCCEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRR--GSPLP------R-N------AYF------ENFNRILTIPNVKVEDQGEYI  740 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~--g~~l~------~-~------~~~------~~~~~~L~i~~v~~~d~G~Y~  740 (813)
                      +.+.+|++|+|+|.........+.|||-  |+.+.      . .      .++      ......|+|.+++.+|+|.|.
T Consensus        10 v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   89 (115)
T d1j8hd1          10 VSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMSDAAEYF   89 (115)
T ss_dssp             EEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGGGCEEEE
T ss_pred             EEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccccCCccce
Confidence            5678999999999987665668999983  33211      0 0      011      111236999999999999999


Q ss_pred             EEEEcC
Q psy14896        741 CRASND  746 (813)
Q Consensus       741 C~a~N~  746 (813)
                      |.+...
T Consensus        90 Ca~~~~   95 (115)
T d1j8hd1          90 CAVSES   95 (115)
T ss_dssp             EEEESS
T ss_pred             eeecCC
Confidence            999764

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.77  E-value=0.0001  Score=59.08  Aligned_cols=81  Identities=20%  Similarity=0.370  Sum_probs=49.9

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecc--ccccccc--ccccccCCCccEEee----CCeEEEcCC
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKED--YVQDRLV--ANLIDPLSDKRFTLS----GGNLIINDP  263 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g--~~l~~~~--~~~~~~~~~~~~~~~----~~~l~i~~~  263 (813)
                      ++..|..+.+.+|     ++|+|.|...+.-...+.|||..  +......  ..........++...    +..|.|.+.
T Consensus         6 ltQsP~~l~~~~G-----~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l   80 (109)
T d1bwwa_           6 MTQSPSSLSASVG-----DRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSL   80 (109)
T ss_dssp             EEEECSEEEECTT-----CCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             EEeeCCEEEECCC-----CCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeec
Confidence            4455777877777     77999999976555678999852  2111110  011112223344432    224777775


Q ss_pred             ccccCCeeEEEEeec
Q psy14896        264 RQVEDRGSYHCKASN  278 (813)
Q Consensus       264 ~~~~d~G~Y~C~a~n  278 (813)
                       +.+|+|.|.|.+..
T Consensus        81 -~~~Dsa~YyCA~~~   94 (109)
T d1bwwa_          81 -QPEDIATYYCQQYQ   94 (109)
T ss_dssp             -CGGGCEEEEEEECS
T ss_pred             -eeCcCceEEEeecC
Confidence             89999999998764

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=3.8e-05  Score=62.28  Aligned_cols=64  Identities=23%  Similarity=0.459  Sum_probs=44.7

Q ss_pred             cCCCCCCeEEEEEEecCC-CCCeEEEEeCC--cccC--------CC----------cee----eecceEEEECCCCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGY-PVPSYNWTRRG--SPLP--------RN----------AYF----ENFNRILTIPNVKVEDQ  736 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~-P~p~i~W~k~g--~~l~--------~~----------~~~----~~~~~~L~i~~v~~~d~  736 (813)
                      .++.+|++|+|+|.+.+. ....+.|||-.  ..+.        .+          .++    ......|+|.+++.+|+
T Consensus        10 ~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~l~~~Ds   89 (114)
T d1akjd_          10 RTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRRENE   89 (114)
T ss_dssp             CCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEccCCCCCC
Confidence            678899999999998754 34579999832  2110        00          111    11234699999999999


Q ss_pred             EEEEEEEEc
Q psy14896        737 GEYICRASN  745 (813)
Q Consensus       737 G~Y~C~a~N  745 (813)
                      |.|.|.+..
T Consensus        90 g~YyCa~~~   98 (114)
T d1akjd_          90 GYYFCSALS   98 (114)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEeEeEcC
Confidence            999999864

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=3.5e-05  Score=60.36  Aligned_cols=68  Identities=16%  Similarity=0.255  Sum_probs=42.7

Q ss_pred             ccccEEEEeeeccC-CC-CeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCc
Q psy14896        208 ILNDITLSCYAGGY-PN-PSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKF  280 (813)
Q Consensus       208 ~g~~v~l~C~~~g~-P~-p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~  280 (813)
                      .|+.++|.|.+.|+ |. ..|+|.+||.++.........+..+..|.. ...|.+    ..+|.+.|+|++....
T Consensus        18 ~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~-~s~l~v----~~~~~~~ytC~V~H~s   87 (100)
T d1k5nb_          18 NGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL-LYYTEF----TPTEKDEYACRVNHVT   87 (100)
T ss_dssp             TTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEE-EEEEEE----CCCSSCCEEEEEECTT
T ss_pred             CCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEE-EEEeEE----CCCCCCEEEEEEEeCC
Confidence            34779999999984 54 489999999987543322223333333322 111222    3456789999999754

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.76  E-value=2.4e-05  Score=62.49  Aligned_cols=64  Identities=23%  Similarity=0.394  Sum_probs=46.0

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeC--CcccC----------C--Ccee----eecceEEEECCCCCCCCEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRR--GSPLP----------R--NAYF----ENFNRILTIPNVKVEDQGEYICRA  743 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~--g~~l~----------~--~~~~----~~~~~~L~i~~v~~~d~G~Y~C~a  743 (813)
                      ..+.+|++|+|.|.........+.|||.  |..+.          .  ..++    ......|+|.+++.+|+|.|.|.+
T Consensus        11 l~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsa~YyCa~   90 (107)
T d1d5il1          11 MYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMGIYYCLQ   90 (107)
T ss_dssp             EEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             EEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCCEEEEeee
Confidence            4678999999999988766667999973  22110          0  0112    122457999999999999999976


Q ss_pred             Ec
Q psy14896        744 SN  745 (813)
Q Consensus       744 ~N  745 (813)
                      .+
T Consensus        91 ~~   92 (107)
T d1d5il1          91 YD   92 (107)
T ss_dssp             CS
T ss_pred             cc
Confidence            54

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.75  E-value=2e-05  Score=62.99  Aligned_cols=64  Identities=27%  Similarity=0.482  Sum_probs=45.5

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeC--CcccC------------CCcee----eecceEEEECCCCCCCCEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRR--GSPLP------------RNAYF----ENFNRILTIPNVKVEDQGEYICRA  743 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~--g~~l~------------~~~~~----~~~~~~L~i~~v~~~d~G~Y~C~a  743 (813)
                      ..+.+|++|+|+|.........+.|||.  |..+.            ...++    ......|+|.+++.+|+|.|.|.+
T Consensus        11 l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsA~YyCa~   90 (107)
T d1tjgl1          11 LSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDFATYYCQQ   90 (107)
T ss_dssp             EEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEEE
T ss_pred             EEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcCceEEEEE
Confidence            5678999999999998655678999983  22110            00111    222457999999999999999976


Q ss_pred             Ec
Q psy14896        744 SN  745 (813)
Q Consensus       744 ~N  745 (813)
                      .+
T Consensus        91 ~~   92 (107)
T d1tjgl1          91 LH   92 (107)
T ss_dssp             CS
T ss_pred             Cc
Confidence            53

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.75  E-value=0.00011  Score=59.71  Aligned_cols=79  Identities=19%  Similarity=0.290  Sum_probs=46.9

Q ss_pred             eCCCceeecCCCccccccEEEEeeecc-CCCCeEEEeecc-----ccccc------cccccccc-CCCccEEe-e-----
Q psy14896        194 KQPTDVVFDLSKRSILNDITLSCYAGG-YPNPSYEWFKED-----YVQDR------LVANLIDP-LSDKRFTL-S-----  254 (813)
Q Consensus       194 ~~p~~~~v~~g~~~~g~~v~l~C~~~g-~P~p~v~W~k~g-----~~l~~------~~~~~~~~-~~~~~~~~-~-----  254 (813)
                      ..|..+.+.+|     ++|+|.|.+.+ .....+.|||..     +.+.-      ........ ....++.. .     
T Consensus         3 Q~P~~~~v~~G-----~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~   77 (115)
T d2atpb1           3 QTPSSLLVQTN-----HTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSR   77 (115)
T ss_dssp             EECSEEEECTT-----SCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSS
T ss_pred             eeCCcEEEcCC-----CCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCC
Confidence            45677777777     77999999876 345579999852     11100      00000001 11223222 1     


Q ss_pred             CCeEEEcCCccccCCeeEEEEeec
Q psy14896        255 GGNLIINDPRQVEDRGSYHCKASN  278 (813)
Q Consensus       255 ~~~l~i~~~~~~~d~G~Y~C~a~n  278 (813)
                      ..+|.|.+. +.+|+|.|.|.+..
T Consensus        78 ~~~L~I~~~-~~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          78 RPFLSIMNV-KPEDSDFYFCATVG  100 (115)
T ss_dssp             SCEEEECSC-CGGGCEEEEEEEEC
T ss_pred             eEEEeeccc-CCCCCcEEEEeEcC
Confidence            235778885 89999999998753

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.75  E-value=0.00012  Score=58.15  Aligned_cols=77  Identities=22%  Similarity=0.399  Sum_probs=46.6

Q ss_pred             CCCceeecCCCccccccEEEEeeeccCCCCeEEEeecc--cccccccc--cccccCCCccEEee----CCeEEEcCCccc
Q psy14896        195 QPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKED--YVQDRLVA--NLIDPLSDKRFTLS----GGNLIINDPRQV  266 (813)
Q Consensus       195 ~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g--~~l~~~~~--~~~~~~~~~~~~~~----~~~l~i~~~~~~  266 (813)
                      +|..+.+.+|     ++|+|.|...+.....+.|||..  +.......  .........++...    +-.|.|.+. +.
T Consensus         6 Qp~s~~~~~G-----~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~-~~   79 (106)
T d1lk3l1           6 QPPALTVSPG-----EKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPV-EA   79 (106)
T ss_dssp             CCSEEEECTT-----SCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC-CG
T ss_pred             eCCeEEECCC-----CCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCc-Ch
Confidence            3445666666     77999999986666689999752  22211111  11111223344432    124777775 99


Q ss_pred             cCCeeEEEEee
Q psy14896        267 EDRGSYHCKAS  277 (813)
Q Consensus       267 ~d~G~Y~C~a~  277 (813)
                      +|+|.|.|.+.
T Consensus        80 ~Dsa~YyCa~~   90 (106)
T d1lk3l1          80 DDTAIYFCQQS   90 (106)
T ss_dssp             GGCEEEEEEEC
T ss_pred             hhCCCcccccc
Confidence            99999999765

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=2.2e-05  Score=62.95  Aligned_cols=72  Identities=17%  Similarity=0.266  Sum_probs=49.0

Q ss_pred             ceeecCCCeEEEecCCCCCCc---ceEEEeecccccccc----------CCccEEEccCc--cEEEeeeeecCCeeeEEE
Q psy14896        305 EIGNQNWGKAMFCDPPTNYPG---VNYYWARDYFPNFVE----------EDKRVFVSYDG--ALYFSALEQIDAGNYSCN  369 (813)
Q Consensus       305 ~~~~~~~~~~l~C~~~~~~p~---~~v~W~k~~~~~~~~----------~~~~~~~~~~~--~L~i~~v~~~D~G~Y~C~  369 (813)
                      .....|+.++|.|........   ..+.|.+++..+...          ...|+....++  +|.|.+++.+|+|.|.|.
T Consensus         4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C~   83 (105)
T d1dr9a1           4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECV   83 (105)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEE
T ss_pred             EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeEEEEE
Confidence            456789999999986433222   577888876543111          12344443333  799999999999999999


Q ss_pred             Eeeeccc
Q psy14896        370 VQSKVSD  376 (813)
Q Consensus       370 a~n~~g~  376 (813)
                      +.+..+.
T Consensus        84 V~~~~~~   90 (105)
T d1dr9a1          84 VLKYEKD   90 (105)
T ss_dssp             EEECCTT
T ss_pred             EEeCCCC
Confidence            9875443

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=4.4e-05  Score=59.30  Aligned_cols=68  Identities=16%  Similarity=0.360  Sum_probs=43.7

Q ss_pred             ccEEEEeeecc-CCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCcee
Q psy14896        210 NDITLSCYAGG-YPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGS  282 (813)
Q Consensus       210 ~~v~l~C~~~g-~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~  282 (813)
                      +.++|.|.+.| +|.+.|.|++||+++............+..|... ..|.+.    ..+...|+|.+.+..-.
T Consensus        17 ~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~-S~L~v~----~~~~~~~tC~V~h~~l~   85 (95)
T d1dr9a2          17 NIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVS-SKLDFN----MTTNHSFMCLIKYGHLR   85 (95)
T ss_dssp             TEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEE-EEEEEE----TTSCEEEEEEEEETTCC
T ss_pred             CEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEE-EEEEcc----CCccceEEEEEEecCCC
Confidence            66999999986 7999999999998875433222222222333321 224442    34567899999976543

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.74  E-value=0.0001  Score=60.51  Aligned_cols=93  Identities=16%  Similarity=0.235  Sum_probs=52.3

Q ss_pred             eCCCceeecCCCccccccEEEEeeecc----CCCCeEEEeeccccc--cccc-----cc---ccccCCCccEEee-----
Q psy14896        194 KQPTDVVFDLSKRSILNDITLSCYAGG----YPNPSYEWFKEDYVQ--DRLV-----AN---LIDPLSDKRFTLS-----  254 (813)
Q Consensus       194 ~~p~~~~v~~g~~~~g~~v~l~C~~~g----~P~p~v~W~k~g~~l--~~~~-----~~---~~~~~~~~~~~~~-----  254 (813)
                      ..|.++.+..|     ++|+|.|....    .....|.|+|....-  ....     ..   ........|..+.     
T Consensus         4 ~~p~~v~a~~G-----~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~   78 (119)
T d1neua_           4 YTDREVYGAVG-----SQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSW   78 (119)
T ss_dssp             ECCSEEEEETT-----SCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGG
T ss_pred             cCCCeEEEeeC-----CCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCC
Confidence            34567777666     77999998642    233489999854210  0000     00   0111222344432     


Q ss_pred             -CCeEEEcCCccccCCeeEEEEeecCceee-EeeeeEEee
Q psy14896        255 -GGNLIINDPRQVEDRGSYHCKASNKFGSI-ISESVQLAF  292 (813)
Q Consensus       255 -~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~-~s~~~~l~v  292 (813)
                       +.+|.|.+. +.+|+|.|.|.+.+..+.. ....++|.|
T Consensus        79 ~~~sL~I~~v-~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V  117 (119)
T d1neua_          79 KDGSIVIHNL-DYSDNGTFTCDVKNPPDIVGKTSQVTLYV  117 (119)
T ss_dssp             TBCCEEECSC-CGGGCEEEEEEEEC----CCEEEEEEEEE
T ss_pred             CEEEEEECCC-ChHHCEEEEEEEEECCCcCceEEEEEEEE
Confidence             246888886 9999999999998754322 233455555

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=97.74  E-value=4.5e-05  Score=61.12  Aligned_cols=81  Identities=23%  Similarity=0.334  Sum_probs=48.6

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccC-CCCeEEEeecc--cccccccc--cccccCCCccEEee--C--CeEEEcC
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGY-PNPSYEWFKED--YVQDRLVA--NLIDPLSDKRFTLS--G--GNLIIND  262 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~-P~p~v~W~k~g--~~l~~~~~--~~~~~~~~~~~~~~--~--~~l~i~~  262 (813)
                      ++..|..+.+.+|     ++|+|.|...+. ....+.|||..  +.......  .........++...  .  ..|.|.+
T Consensus         4 ltQ~P~~~~v~~G-----~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~   78 (108)
T d2fx7l1           4 LTQSPGTQSLSPG-----ERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISR   78 (108)
T ss_dssp             EECSSSEEEECTT-----CCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESS
T ss_pred             EEeeCCeEEECCC-----CCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehH
Confidence            4455777877777     779999998653 34568999863  32211110  01111222233322  2  2477777


Q ss_pred             CccccCCeeEEEEeec
Q psy14896        263 PRQVEDRGSYHCKASN  278 (813)
Q Consensus       263 ~~~~~d~G~Y~C~a~n  278 (813)
                      . +.+|+|.|.|.+.+
T Consensus        79 ~-~~~Dsa~YyCa~~~   93 (108)
T d2fx7l1          79 L-EPEDFAVYYCQQYG   93 (108)
T ss_dssp             C-CGGGCSEEEEEECS
T ss_pred             h-eecccEEEeeecCC
Confidence            5 99999999998764

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.74  E-value=8.5e-05  Score=58.85  Aligned_cols=77  Identities=23%  Similarity=0.395  Sum_probs=45.1

Q ss_pred             CCceeecCCCccccccEEEEeeeccCCCCeEEEeecc--ccccccc--ccccccCCCccEEee----CCeEEEcCCcccc
Q psy14896        196 PTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKED--YVQDRLV--ANLIDPLSDKRFTLS----GGNLIINDPRQVE  267 (813)
Q Consensus       196 p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g--~~l~~~~--~~~~~~~~~~~~~~~----~~~l~i~~~~~~~  267 (813)
                      |..+.+.+|     ++|+|.|...+.....+.|||..  ..+....  ..........++...    ...|.|.+. +.+
T Consensus         5 p~sl~~~~G-----~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l-~~~   78 (103)
T d8faba1           5 PPSVSVSPG-----QTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGV-QAE   78 (103)
T ss_dssp             CSEEEECTT-----SCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTC-CGG
T ss_pred             CCeEEECCC-----CCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCc-chh
Confidence            445666666     77999999876555679999853  2211000  001111122222221    234777775 899


Q ss_pred             CCeeEEEEeec
Q psy14896        268 DRGSYHCKASN  278 (813)
Q Consensus       268 d~G~Y~C~a~n  278 (813)
                      |+|.|.|.+.+
T Consensus        79 Dsa~YyCA~~~   89 (103)
T d8faba1          79 DEADYYCQAWD   89 (103)
T ss_dssp             GCEEEEEEEEE
T ss_pred             HCceEEeeecC
Confidence            99999998764

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.73  E-value=3.9e-05  Score=60.08  Aligned_cols=87  Identities=20%  Similarity=0.200  Sum_probs=54.1

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCC--eEEEcCCccc
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGG--NLIINDPRQV  266 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~  266 (813)
                      +|.+...|.. .|..|     ++|+|.|+... +...+.|||+|......         ........+  .+.|.. +..
T Consensus         6 kPsLsa~P~~-~V~~G-----~~VTL~C~~~~-~~~~f~L~k~g~~~~~~---------~~~~~~~~~~~~f~~~~-~~~   68 (99)
T d1nkra2           6 KPSLSAQPGP-TVLAG-----ENVTLSCSSRS-SYDMYHLSREGEAHERR---------LPAGPKVNGTFQADFPL-GPA   68 (99)
T ss_dssp             CCEEEEESCS-EECTT-----CEEEEEEEESS-CCSEEEEEETTCSSCEE---------EECEEEETTEEEEEEEE-EEC
T ss_pred             CCEEEEeCCC-cccCC-----CeEEEEECCCC-CccEEEEEECCCccccE---------EEccccCCccEEEEEec-ccc
Confidence            5888888865 45566     66999999764 66799999999532100         000011111  234444 467


Q ss_pred             cCCeeEEEEeecCc----eeeEeeeeEEee
Q psy14896        267 EDRGSYHCKASNKF----GSIISESVQLAF  292 (813)
Q Consensus       267 ~d~G~Y~C~a~n~~----g~~~s~~~~l~v  292 (813)
                      .|+|.|+|......    .+..|..+.|.|
T Consensus        69 ~~~G~Y~C~y~~~~~p~~wS~~SdpLeL~V   98 (99)
T d1nkra2          69 THGGTYRCFGSFHDSPYEWSKSSDPLLVSV   98 (99)
T ss_dssp             CSCEEEEEEEEETTEEEEECCCCCCEEEEE
T ss_pred             ccCEEEEEEeecCCCCCCccCCCCCEEEEE
Confidence            89999999876332    234466677765

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.73  E-value=2.5e-05  Score=62.30  Aligned_cols=64  Identities=28%  Similarity=0.447  Sum_probs=45.3

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeC--CcccC------------CCcee----eecceEEEECCCCCCCCEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRR--GSPLP------------RNAYF----ENFNRILTIPNVKVEDQGEYICRA  743 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~--g~~l~------------~~~~~----~~~~~~L~i~~v~~~d~G~Y~C~a  743 (813)
                      ..+.+|++|+|.|.....-...+.|||-  |..+.            ...++    ......|+|.+++.+|+|.|.|.+
T Consensus        11 l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~DsA~YyCa~   90 (107)
T d1mexl1          11 MSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLAEYFCQQ   90 (107)
T ss_dssp             EEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEEE
T ss_pred             EEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecceeEEEeE
Confidence            5678999999999987665567999973  32210            00111    122356999999999999999976


Q ss_pred             Ec
Q psy14896        744 SN  745 (813)
Q Consensus       744 ~N  745 (813)
                      ..
T Consensus        91 ~~   92 (107)
T d1mexl1          91 YN   92 (107)
T ss_dssp             CS
T ss_pred             CC
Confidence            53

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.73  E-value=0.00013  Score=58.14  Aligned_cols=81  Identities=23%  Similarity=0.388  Sum_probs=49.8

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecc--ccccccccc--ccccCCCccEEee----CCeEEEcCC
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKED--YVQDRLVAN--LIDPLSDKRFTLS----GGNLIINDP  263 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g--~~l~~~~~~--~~~~~~~~~~~~~----~~~l~i~~~  263 (813)
                      ++..|..+.+.+|     ++|+|.|.........+.|||..  +........  ........++...    +.+|.|.+.
T Consensus         4 ~tQ~P~sl~~~~G-----~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~   78 (107)
T d1d5il1           4 MTQSPSSMYASLG-----ERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSL   78 (107)
T ss_dssp             EEEECSEEEECTT-----CCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSC
T ss_pred             EEeeCCEEEECCC-----CCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEcccccc
Confidence            4455777777776     77999999876666779999752  222111100  0011122334322    235777775


Q ss_pred             ccccCCeeEEEEeec
Q psy14896        264 RQVEDRGSYHCKASN  278 (813)
Q Consensus       264 ~~~~d~G~Y~C~a~n  278 (813)
                       +.+|+|.|.|.+..
T Consensus        79 -~~~Dsa~YyCa~~~   92 (107)
T d1d5il1          79 -EYEDMGIYYCLQYD   92 (107)
T ss_dssp             -CGGGCEEEEEEECS
T ss_pred             -CCcCCEEEEeeecc
Confidence             89999999997664

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=97.70  E-value=3.8e-05  Score=60.04  Aligned_cols=67  Identities=19%  Similarity=0.212  Sum_probs=41.2

Q ss_pred             cccEEEEeeeccC-C-CCeEEEeeccccccccccc-ccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCc
Q psy14896        209 LNDITLSCYAGGY-P-NPSYEWFKEDYVQDRLVAN-LIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKF  280 (813)
Q Consensus       209 g~~v~l~C~~~g~-P-~p~v~W~k~g~~l~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~  280 (813)
                      |+.++|.|.+.|+ | ...|+|+|||+++...... ......+..|... ..|.+    ..++.+.|+|++.+..
T Consensus        17 ~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~-s~l~v----~~~~~~~ytC~V~H~s   86 (100)
T d1muja1          17 GQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKL-SYLTF----IPSDDDIYDCKVEHWG   86 (100)
T ss_dssp             TSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEE-EEEEE----CCCTTCCEEEEEECTT
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEE-EEeEE----cCCCCCEEEEEEEECC
Confidence            4679999999984 4 5699999999887533211 1122233233221 12333    2356778999999753

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=1.1e-05  Score=62.87  Aligned_cols=66  Identities=14%  Similarity=0.105  Sum_probs=45.7

Q ss_pred             ceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEEEEe
Q psy14896        578 EIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQS  645 (813)
Q Consensus       578 ~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n  645 (813)
                      ..+..|++++|.|..  ..+...+..+|+|..................+.|.+++.+|+|.|+|....
T Consensus        13 ~~V~~G~~VTL~C~~--~~~~~~f~L~keg~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~   78 (96)
T d1ugna1          13 SVITQGSPVTLRCQG--GQETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGS   78 (96)
T ss_dssp             SEEETTCCEEEEEEC--CTTCCCEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CccCCCCcEEEEEeC--CCCCCEEEEEECCCCcccEEEccCCCCCEEEEEEEecCHHHCCeEEEEEeC
Confidence            456789999999996  455678899998864221111110011234699999999999999998754

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.70  E-value=3.3e-05  Score=62.03  Aligned_cols=64  Identities=23%  Similarity=0.439  Sum_probs=45.6

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeC--CcccC------------CCcee----eecceEEEECCCCCCCCEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRR--GSPLP------------RNAYF----ENFNRILTIPNVKVEDQGEYICRA  743 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~--g~~l~------------~~~~~----~~~~~~L~i~~v~~~d~G~Y~C~a  743 (813)
                      ..+.+|++|+|.|...+.-...+.|||.  |+.+.            ...++    ......|+|.+++.+|+|.|.|.+
T Consensus        13 l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Dsa~YyCA~   92 (109)
T d1bwwa_          13 LSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIATYYCQQ   92 (109)
T ss_dssp             EEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             EEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcCceEEEee
Confidence            5678999999999998765667999983  22110            00111    122347999999999999999987


Q ss_pred             Ec
Q psy14896        744 SN  745 (813)
Q Consensus       744 ~N  745 (813)
                      ..
T Consensus        93 ~~   94 (109)
T d1bwwa_          93 YQ   94 (109)
T ss_dssp             CS
T ss_pred             cC
Confidence            53

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.70  E-value=4e-05  Score=62.39  Aligned_cols=63  Identities=21%  Similarity=0.339  Sum_probs=44.3

Q ss_pred             cCCCCCCeEEEEEEecCC-CCCeEEEEeC-----Cccc------CC-----------Ccee------eecceEEEECCCC
Q psy14896        682 EAPKAGDKVRLECVAFGY-PVPSYNWTRR-----GSPL------PR-----------NAYF------ENFNRILTIPNVK  732 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~-P~p~i~W~k~-----g~~l------~~-----------~~~~------~~~~~~L~i~~v~  732 (813)
                      ..+.+|++|+|+|.+.+. ....+.|||-     ++.|      ..           ..++      ......|+|.+++
T Consensus         8 ~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~   87 (115)
T d2atpb1           8 LLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSIMNVK   87 (115)
T ss_dssp             EEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEECSCC
T ss_pred             EEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEeecccC
Confidence            567899999999999864 4457999973     2211      00           0111      1123479999999


Q ss_pred             CCCCEEEEEEEE
Q psy14896        733 VEDQGEYICRAS  744 (813)
Q Consensus       733 ~~d~G~Y~C~a~  744 (813)
                      .+|+|.|.|.+.
T Consensus        88 ~~Dsg~Y~Ca~~   99 (115)
T d2atpb1          88 PEDSDFYFCATV   99 (115)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCCCcEEEEeEc
Confidence            999999999875

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.70  E-value=5.6e-05  Score=60.78  Aligned_cols=82  Identities=22%  Similarity=0.417  Sum_probs=47.3

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccC----CCCeEEEeec--cccccccccc--ccccCCCccEEee----CCeEE
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGY----PNPSYEWFKE--DYVQDRLVAN--LIDPLSDKRFTLS----GGNLI  259 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~----P~p~v~W~k~--g~~l~~~~~~--~~~~~~~~~~~~~----~~~l~  259 (813)
                      ++..|..+.+.+|     ++|+|.|.....    -...+.|||.  |+........  ........++...    +-+|.
T Consensus         4 ltQsP~~l~v~~G-----~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~   78 (111)
T d1j05a_           4 LTQSPASLAVSLG-----QRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLI   78 (111)
T ss_dssp             EEEECSEEECCTT-----SCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEE
T ss_pred             EEccCCEEEECCC-----CCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEE
Confidence            3445677777666     779999987431    1234999995  4332211100  1111122233332    22467


Q ss_pred             EcCCccccCCeeEEEEeecC
Q psy14896        260 INDPRQVEDRGSYHCKASNK  279 (813)
Q Consensus       260 i~~~~~~~d~G~Y~C~a~n~  279 (813)
                      |.+. +.+|+|.|.|.+.+.
T Consensus        79 I~~~-~~~Dsa~YyCa~~~~   97 (111)
T d1j05a_          79 IDPV-EADDVATYYCQQTNE   97 (111)
T ss_dssp             ESSC-CGGGCEEEEEEECSS
T ss_pred             Eccc-ccccCccEEEeecCC
Confidence            7775 899999999987643

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.70  E-value=7.9e-05  Score=59.81  Aligned_cols=82  Identities=22%  Similarity=0.349  Sum_probs=48.4

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccC-C---CCeEEEeec--ccccccccccc--cccCCCccEEee----CCeEE
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGY-P---NPSYEWFKE--DYVQDRLVANL--IDPLSDKRFTLS----GGNLI  259 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~-P---~p~v~W~k~--g~~l~~~~~~~--~~~~~~~~~~~~----~~~l~  259 (813)
                      ++..|..+.+.+|     ++|+|+|.+++. .   ...+.|||.  |+.........  .......++...    +..|.
T Consensus         4 ltQsP~s~s~~~G-----~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~   78 (111)
T d2gsia1           4 LTQSPASLAVSLG-----QPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLN   78 (111)
T ss_dssp             EEEECSEEEEETT-----SCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEE
T ss_pred             eEeeCCEEEECCC-----CCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcc
Confidence            4455777877777     779999987542 2   234899996  33322111110  111122344432    23477


Q ss_pred             EcCCccccCCeeEEEEeecC
Q psy14896        260 INDPRQVEDRGSYHCKASNK  279 (813)
Q Consensus       260 i~~~~~~~d~G~Y~C~a~n~  279 (813)
                      |.+. +.+|+|.|.|.+...
T Consensus        79 I~~~-~~~DsA~YyCa~~~~   97 (111)
T d2gsia1          79 IHPV-EEEDAATYYCSHIRE   97 (111)
T ss_dssp             ESSC-CGGGCEEEEEEECSS
T ss_pred             cccc-cccCCceEEEEECCC
Confidence            7775 899999999987643

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.69  E-value=0.00015  Score=58.26  Aligned_cols=71  Identities=17%  Similarity=0.201  Sum_probs=47.2

Q ss_pred             CCceeecCCCeEEEecCCCCCCcceEEEeec--ccccc----------ccCCccEEEccCc---cEEEeeeeecCCeeeE
Q psy14896        303 APEIGNQNWGKAMFCDPPTNYPGVNYYWARD--YFPNF----------VEEDKRVFVSYDG---ALYFSALEQIDAGNYS  367 (813)
Q Consensus       303 ~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~--~~~~~----------~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~  367 (813)
                      ....+.+|+.++|.|..........+.|||-  |+...          .....+.....++   .|.|.+++.+|+|.|.
T Consensus         6 ~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   85 (110)
T d2esvd1           6 PSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVYY   85 (110)
T ss_dssp             SEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEEE
T ss_pred             CEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEEE
Confidence            4467788999999998644445567899973  22210          0112223333322   6999999999999999


Q ss_pred             EEEeee
Q psy14896        368 CNVQSK  373 (813)
Q Consensus       368 C~a~n~  373 (813)
                      |.+...
T Consensus        86 Ca~~~~   91 (110)
T d2esvd1          86 CIVVRS   91 (110)
T ss_dssp             EEEEES
T ss_pred             EEEeCC
Confidence            988643

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.69  E-value=6.1e-05  Score=58.92  Aligned_cols=83  Identities=12%  Similarity=-0.024  Sum_probs=53.1

Q ss_pred             CceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCccEEEccCccEEEeeeeecCCeeeEEEEeeecc--ccCCCC
Q psy14896        304 PEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVS--DTGRNG  381 (813)
Q Consensus       304 ~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g--~~~~~s  381 (813)
                      ...+..|+.++|.|..  ..+...+.|+|+|..................+.|..+...|+|.|+|.......  ..+..|
T Consensus        14 ~~~V~~G~~VTL~C~~--~~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~~~~p~~wS~~S   91 (99)
T d1nkra2          14 GPTVLAGENVTLSCSS--RSSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCFGSFHDSPYEWSKSS   91 (99)
T ss_dssp             CSEECTTCEEEEEEEE--SSCCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECCSCEEEEEEEEETTEEEEECCCC
T ss_pred             CCcccCCCeEEEEECC--CCCccEEEEEECCCccccEEEccccCCccEEEEEeccccccCEEEEEEeecCCCCCCccCCC
Confidence            3467889999999984  446788999999875322211111222223578999999999999997654321  123335


Q ss_pred             CceeeEE
Q psy14896        382 PFFPLKV  388 (813)
Q Consensus       382 ~~~~l~v  388 (813)
                      +.+.|.|
T Consensus        92 dpLeL~V   98 (99)
T d1nkra2          92 DPLLVSV   98 (99)
T ss_dssp             CCEEEEE
T ss_pred             CCEEEEE
Confidence            5555554

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.68  E-value=4.2e-05  Score=61.91  Aligned_cols=66  Identities=24%  Similarity=0.409  Sum_probs=45.6

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeC--CcccC------CCce--------e---eecceEEEECCCCCCCCEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRR--GSPLP------RNAY--------F---ENFNRILTIPNVKVEDQGEYICR  742 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~--g~~l~------~~~~--------~---~~~~~~L~i~~v~~~d~G~Y~C~  742 (813)
                      ..+.+|++|+|.|..++. ...+.|||-  |..+.      ....        .   ......|+|.+++.+|+|.|.|.
T Consensus        11 ~~v~~G~~vtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa   89 (113)
T d1h5ba_          11 LSLHEGTDSALRCNFTTT-MRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGTYFCA   89 (113)
T ss_dssp             EEEETTCCEEEEEEESSC-CSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCEEEEEE
T ss_pred             EEEcCCCCEEEEEEEecC-CccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHCEEEEEE
Confidence            557899999999998754 347999983  22110      0000        0   11234699999999999999999


Q ss_pred             EEcCCC
Q psy14896        743 ASNDRS  748 (813)
Q Consensus       743 a~N~~G  748 (813)
                      +....+
T Consensus        90 ~~~~~~   95 (113)
T d1h5ba_          90 AEASSG   95 (113)
T ss_dssp             EECSSS
T ss_pred             ecCCCC
Confidence            875543

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.68  E-value=3.5e-05  Score=62.04  Aligned_cols=64  Identities=25%  Similarity=0.426  Sum_probs=43.7

Q ss_pred             cCCCCCCeEEEEEEecCCC----CCeEEEEeC--CcccC-----C-------Ccee----eecceEEEECCCCCCCCEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYP----VPSYNWTRR--GSPLP-----R-------NAYF----ENFNRILTIPNVKVEDQGEY  739 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P----~p~i~W~k~--g~~l~-----~-------~~~~----~~~~~~L~i~~v~~~d~G~Y  739 (813)
                      ..+.+|++|+|.|.+...-    ...+.|||.  |+.+.     .       ..++    ......|.|.+++.+|+|.|
T Consensus        11 l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   90 (111)
T d1j05a_          11 LAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDVATY   90 (111)
T ss_dssp             EECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGGGCEEE
T ss_pred             EEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccccccCccE
Confidence            5578999999999875321    234999983  43221     0       0011    22345799999999999999


Q ss_pred             EEEEEc
Q psy14896        740 ICRASN  745 (813)
Q Consensus       740 ~C~a~N  745 (813)
                      .|.+.+
T Consensus        91 yCa~~~   96 (111)
T d1j05a_          91 YCQQTN   96 (111)
T ss_dssp             EEEECS
T ss_pred             EEeecC
Confidence            998754

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.68  E-value=2.7e-05  Score=60.60  Aligned_cols=60  Identities=25%  Similarity=0.436  Sum_probs=42.7

Q ss_pred             CCeEEEEEEecCCCCCeEEEEeC--Cccc------CCCc-----eee------ecceEEEECCCCCCCCEEEEEEEEcC
Q psy14896        687 GDKVRLECVAFGYPVPSYNWTRR--GSPL------PRNA-----YFE------NFNRILTIPNVKVEDQGEYICRASND  746 (813)
Q Consensus       687 G~~v~l~C~~~g~P~p~i~W~k~--g~~l------~~~~-----~~~------~~~~~L~i~~v~~~d~G~Y~C~a~N~  746 (813)
                      |++|+|.|.........+.|||.  |..+      ....     ++.      ....+|+|.+++.+|+|.|.|.+...
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence            78999999988777778999983  2211      1110     111      11347999999999999999988754

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.67  E-value=4.4e-05  Score=61.67  Aligned_cols=67  Identities=18%  Similarity=0.406  Sum_probs=46.3

Q ss_pred             CcCCCCCCeEEEEEEecCCC---CCeEEEEeC--CcccC------------CCcee----eecceEEEECCCCCCCCEEE
Q psy14896        681 PEAPKAGDKVRLECVAFGYP---VPSYNWTRR--GSPLP------------RNAYF----ENFNRILTIPNVKVEDQGEY  739 (813)
Q Consensus       681 ~~~~~~G~~v~l~C~~~g~P---~p~i~W~k~--g~~l~------------~~~~~----~~~~~~L~i~~v~~~d~G~Y  739 (813)
                      .+.+.+|++|+|.|...+..   ...+.|||.  |+.+.            ...++    ......|.|.+++.+|+|.|
T Consensus         9 s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Y   88 (112)
T d1lgva1           9 SVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEADY   88 (112)
T ss_dssp             EEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred             cEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCEEE
Confidence            36788999999999987542   245999983  22210            00111    22345799999999999999


Q ss_pred             EEEEEcCC
Q psy14896        740 ICRASNDR  747 (813)
Q Consensus       740 ~C~a~N~~  747 (813)
                      .|.+.+..
T Consensus        89 yCa~~~~~   96 (112)
T d1lgva1          89 YCSSYDGS   96 (112)
T ss_dssp             EEEEECSS
T ss_pred             EEeeecCC
Confidence            99887543

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.67  E-value=0.00012  Score=59.70  Aligned_cols=82  Identities=15%  Similarity=0.325  Sum_probs=51.4

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeec--ccccccccc-------cccccCCCccEEee--C---Ce
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKE--DYVQDRLVA-------NLIDPLSDKRFTLS--G---GN  257 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~--g~~l~~~~~-------~~~~~~~~~~~~~~--~---~~  257 (813)
                      ++..|....+.+|     ++|+|.|...+.....+.|||.  |+.+.-...       ..-......++...  +   ..
T Consensus         4 v~Q~P~~~~~~~G-----~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~   78 (118)
T d2ij0c1           4 VSQHPSMVIVKSG-----TSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLST   78 (118)
T ss_dssp             EEEECSEEEECTT-----CCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEE
T ss_pred             EEEcCCeEEEcCC-----CCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeecccccccc
Confidence            4555777777776     7799999987766678999994  333221100       01111223444432  1   24


Q ss_pred             EEEcCCccccCCeeEEEEeecC
Q psy14896        258 LIINDPRQVEDRGSYHCKASNK  279 (813)
Q Consensus       258 l~i~~~~~~~d~G~Y~C~a~n~  279 (813)
                      |.|.+. +.+|+|.|.|.+...
T Consensus        79 L~i~~~-~~~Dsa~YyCa~~~~   99 (118)
T d2ij0c1          79 LTVTSA-HPEDSGFYVCSALAG   99 (118)
T ss_dssp             EEECSC-CGGGCEEEEEEEECS
T ss_pred             cccccc-ccccCceEEEEEecC
Confidence            677775 899999999998643

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.67  E-value=5.4e-05  Score=60.37  Aligned_cols=81  Identities=22%  Similarity=0.382  Sum_probs=48.2

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecc--cccccccc--cccccCCCccEEee----CCeEEEcCC
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKED--YVQDRLVA--NLIDPLSDKRFTLS----GGNLIINDP  263 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g--~~l~~~~~--~~~~~~~~~~~~~~----~~~l~i~~~  263 (813)
                      ++..|..+.+.+|     ++|+|.|.........+.|||..  +.+.....  .........++...    ..+|.|.+.
T Consensus         4 ltQsP~s~~~~~G-----~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~   78 (107)
T d3cx5k1           4 LTQTPVSLAASLG-----DRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNL   78 (107)
T ss_dssp             EEEESTTCCBCSS-----SCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCC
T ss_pred             EECcCCEEEECCC-----CCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEe
Confidence            4455677777666     77999999877666779999853  22211110  00111111222211    225677665


Q ss_pred             ccccCCeeEEEEeec
Q psy14896        264 RQVEDRGSYHCKASN  278 (813)
Q Consensus       264 ~~~~d~G~Y~C~a~n  278 (813)
                       +.+|+|.|.|.+..
T Consensus        79 -~~~Dsa~YyCa~~~   92 (107)
T d3cx5k1          79 -EPEDIATYFCQHHI   92 (107)
T ss_dssp             -CSCCCSEEEEEECS
T ss_pred             -eecCCCcEEeeeCC
Confidence             99999999997653

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.66  E-value=4.8e-05  Score=61.78  Aligned_cols=64  Identities=25%  Similarity=0.412  Sum_probs=45.8

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeC--CcccC------------CCcee----eecceEEEECCCCCCCCEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRR--GSPLP------------RNAYF----ENFNRILTIPNVKVEDQGEYICRA  743 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~--g~~l~------------~~~~~----~~~~~~L~i~~v~~~d~G~Y~C~a  743 (813)
                      +.+.+|++|+|+|...+.-...+.|||.  |..+.            ...++    ......|.|.+++.+|+|.|.|.+
T Consensus        11 v~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DsavYyCa~   90 (119)
T d1f3rb2          11 LSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQ   90 (119)
T ss_dssp             ECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEE
T ss_pred             EEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeEEEeec
Confidence            6789999999999987655567999984  22211            00111    222347999999999999999987


Q ss_pred             Ec
Q psy14896        744 SN  745 (813)
Q Consensus       744 ~N  745 (813)
                      .+
T Consensus        91 ~~   92 (119)
T d1f3rb2          91 YN   92 (119)
T ss_dssp             ES
T ss_pred             cC
Confidence            54

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=3.7e-05  Score=62.86  Aligned_cols=87  Identities=17%  Similarity=0.188  Sum_probs=51.8

Q ss_pred             CCCceeecCCCeEEEecCCCCC--CcceEEEeecccc------------ccccCCccEEEccC-----ccEEEeeeeecC
Q psy14896        302 RAPEIGNQNWGKAMFCDPPTNY--PGVNYYWARDYFP------------NFVEEDKRVFVSYD-----GALYFSALEQID  362 (813)
Q Consensus       302 ~~~~~~~~~~~~~l~C~~~~~~--p~~~v~W~k~~~~------------~~~~~~~~~~~~~~-----~~L~i~~v~~~D  362 (813)
                      +....+.+|+.++|.|....+.  ....+.|+|....            .......+..+..+     .+|.|.+++.+|
T Consensus         6 P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~D   85 (116)
T d1xeda_           6 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDD   85 (116)
T ss_dssp             CSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             CCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcCC
Confidence            3445677899999999864332  2356789874211            00111223332221     269999999999


Q ss_pred             CeeeEEEEeeeccccCCCCCceeeEEccC
Q psy14896        363 AGNYSCNVQSKVSDTGRNGPFFPLKVFPH  391 (813)
Q Consensus       363 ~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~  391 (813)
                      +|.|.|.+........   ..+.|+|...
T Consensus        86 sG~Y~C~v~~~~~~~~---~~v~L~V~~~  111 (116)
T d1xeda_          86 SGRYKCGLGINSRGLS---FDVSLEVLEH  111 (116)
T ss_dssp             CEEEEEEESCGGGCCE---EEEEEEEECC
T ss_pred             CEEEEEEEEcCCCCce---EeEEEEEECC
Confidence            9999999864432221   1366666543

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.65  E-value=2.9e-05  Score=63.17  Aligned_cols=67  Identities=19%  Similarity=0.244  Sum_probs=45.6

Q ss_pred             cCCCCCCeEEEEEEecC-CCCCeEEEEeC--CcccC------C-Cc--------ee----eecceEEEECCCCCCCCEEE
Q psy14896        682 EAPKAGDKVRLECVAFG-YPVPSYNWTRR--GSPLP------R-NA--------YF----ENFNRILTIPNVKVEDQGEY  739 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g-~P~p~i~W~k~--g~~l~------~-~~--------~~----~~~~~~L~i~~v~~~d~G~Y  739 (813)
                      +.+.+|++|+|+|.... .....+.|||-  |..+.      . ..        ..    ......|+|.+++.+|+|.|
T Consensus        10 v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~Y   89 (114)
T d2ak4d1          10 ISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVVDSAVY   89 (114)
T ss_dssp             EEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEE
T ss_pred             EEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccccccCCCc
Confidence            56789999999998763 33456899982  33211      0 00        00    11234799999999999999


Q ss_pred             EEEEEcCCC
Q psy14896        740 ICRASNDRS  748 (813)
Q Consensus       740 ~C~a~N~~G  748 (813)
                      .|.+....+
T Consensus        90 yCa~~~~~~   98 (114)
T d2ak4d1          90 FCALSGFYN   98 (114)
T ss_dssp             EEEEECSBT
T ss_pred             eEeCCCCCC
Confidence            998876543

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.65  E-value=0.00011  Score=58.73  Aligned_cols=80  Identities=24%  Similarity=0.368  Sum_probs=49.5

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecc--cccccccc--cccccCCCccEEee----CCeEEEcCC
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKED--YVQDRLVA--NLIDPLSDKRFTLS----GGNLIINDP  263 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g--~~l~~~~~--~~~~~~~~~~~~~~----~~~l~i~~~  263 (813)
                      ++..|..+.+.+|     ++|+|.|.........+.|||..  +.......  .........++...    ...|.|.+.
T Consensus         4 ltQsP~~l~~~~G-----~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~   78 (109)
T d1mqkl_           4 LTQTPVSLSASVG-----ETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSL   78 (109)
T ss_dssp             EEEECSEEEECTT-----CCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             EECcCCEEEECCC-----CCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccc
Confidence            4556788888777     77999999876556679999943  21111110  01111122333322    224777775


Q ss_pred             ccccCCeeEEEEee
Q psy14896        264 RQVEDRGSYHCKAS  277 (813)
Q Consensus       264 ~~~~d~G~Y~C~a~  277 (813)
                       +.+|+|.|.|.+.
T Consensus        79 -~~~DSa~YyCA~~   91 (109)
T d1mqkl_          79 -LPEDFGSYYCQHH   91 (109)
T ss_dssp             -CGGGCEEEEEEEC
T ss_pred             -cccCCeeEEEeee
Confidence             9999999999876

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=1.2e-05  Score=63.09  Aligned_cols=68  Identities=13%  Similarity=0.193  Sum_probs=46.9

Q ss_pred             eccCCCceEEeCCCCCCCc-cEEEEccCCCCCcccCCCeEEEeeCccE---EEEeecccCCeeEEEEEEeee
Q psy14896        580 GNQNWGKAMFCDPPTNYPG-VNYYWARDYFPNFVEEDKRVFVSYDGAL---YFSALEQIDAGNYSCNVQSKV  647 (813)
Q Consensus       580 ~~~g~~~~l~C~~~~~~p~-~~v~W~k~~~~~~~~~~~~~~~~~~~~L---~i~~~~~~d~G~Y~C~a~n~~  647 (813)
                      ...|+.++|.|.+.+-+|. ..|+|.+||.++............+|++   ....+..+|.+.|+|.+.+..
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~s   87 (100)
T d1k5nb_          16 AENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVT   87 (100)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEEEEECTT
T ss_pred             ccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEEEEEeCC
Confidence            3567888999999555565 5899999998643222233445567764   333556678889999999864

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=97.64  E-value=6.2e-05  Score=60.48  Aligned_cols=65  Identities=23%  Similarity=0.470  Sum_probs=45.4

Q ss_pred             cCCCCCCeEEEEEEecCC--CCCeEEEEeC--Cc----ccCCCceee----e--cceEEEECCCCCCCCEEEEEEEEcC
Q psy14896        682 EAPKAGDKVRLECVAFGY--PVPSYNWTRR--GS----PLPRNAYFE----N--FNRILTIPNVKVEDQGEYICRASND  746 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~--P~p~i~W~k~--g~----~l~~~~~~~----~--~~~~L~i~~v~~~d~G~Y~C~a~N~  746 (813)
                      +.+.+|++|+|.|.+.+.  ....+.|||.  |+    .+..+.++.    .  ....|+|.+++.+|+|.|.|.+.-.
T Consensus         9 ~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~~   87 (112)
T d1sq2n_           9 VTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLGVA   87 (112)
T ss_dssp             EEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECBT
T ss_pred             EEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeEEEecC
Confidence            556899999999998643  4468999983  22    122222221    1  1347999999999999999987643

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.63  E-value=3.9e-05  Score=61.19  Aligned_cols=65  Identities=22%  Similarity=0.398  Sum_probs=46.0

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeC--CcccC----------C--Ccee----eecceEEEECCCCCCCCEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRR--GSPLP----------R--NAYF----ENFNRILTIPNVKVEDQGEYICRA  743 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~--g~~l~----------~--~~~~----~~~~~~L~i~~v~~~d~G~Y~C~a  743 (813)
                      ..+.+|++|+|.|.........+.|||.  |+.+.          .  ..++    ......|.|.+++.+|+|.|.|.+
T Consensus        10 l~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYyCA~   89 (109)
T d1w72l1          10 VSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADYYCQV   89 (109)
T ss_dssp             EEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             EEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEEEEEe
Confidence            5678999999999987655557999973  33210          0  0111    122457999999999999999988


Q ss_pred             EcC
Q psy14896        744 SND  746 (813)
Q Consensus       744 ~N~  746 (813)
                      ...
T Consensus        90 ~~~   92 (109)
T d1w72l1          90 WDS   92 (109)
T ss_dssp             EET
T ss_pred             cCC
Confidence            653

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=97.62  E-value=3e-05  Score=62.78  Aligned_cols=64  Identities=25%  Similarity=0.507  Sum_probs=45.1

Q ss_pred             cCCCCCCeEEEEEEecCC--CCCeEEEEeC--Ccc----cCCCceee------ecceEEEECCCCCCCCEEEEEEEEc
Q psy14896        682 EAPKAGDKVRLECVAFGY--PVPSYNWTRR--GSP----LPRNAYFE------NFNRILTIPNVKVEDQGEYICRASN  745 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~--P~p~i~W~k~--g~~----l~~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~a~N  745 (813)
                      +.+.+|++|+|+|.+++.  +...+.|||.  |..    +....++.      .....|+|.+++.+|+|.|.|.+..
T Consensus        10 ~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~   87 (113)
T d1vesa_          10 ATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQAFY   87 (113)
T ss_dssp             EEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEeeeeec
Confidence            567899999999998743  4457999973  332    22222221      1124799999999999999999864

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.62  E-value=5.5e-05  Score=61.70  Aligned_cols=65  Identities=26%  Similarity=0.439  Sum_probs=46.7

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeC--CcccC-----------------CCceee-----ecceEEEECCCCCCCCE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRR--GSPLP-----------------RNAYFE-----NFNRILTIPNVKVEDQG  737 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~--g~~l~-----------------~~~~~~-----~~~~~L~i~~v~~~d~G  737 (813)
                      ..+.+|++|+|+|...+.....+.|||-  |+.+.                 ...++.     .....|+|.+++.+|+|
T Consensus        11 ~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~Dsa   90 (118)
T d2ij0c1          11 VIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSAHPEDSG   90 (118)
T ss_dssp             EEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSCCGGGCE
T ss_pred             EEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccccccccCc
Confidence            4578999999999988766678999983  33211                 001111     11246999999999999


Q ss_pred             EEEEEEEcC
Q psy14896        738 EYICRASND  746 (813)
Q Consensus       738 ~Y~C~a~N~  746 (813)
                      .|.|.+.-.
T Consensus        91 ~YyCa~~~~   99 (118)
T d2ij0c1          91 FYVCSALAG   99 (118)
T ss_dssp             EEEEEEECS
T ss_pred             eEEEEEecC
Confidence            999998644

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.61  E-value=8.4e-05  Score=60.13  Aligned_cols=72  Identities=15%  Similarity=0.128  Sum_probs=48.3

Q ss_pred             CCCceeecCCCeEEEecCCCCCCcceEEEeec--cccc-----------cccCCccEEEcc--Cc---cEEEeeeeecCC
Q psy14896        302 RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARD--YFPN-----------FVEEDKRVFVSY--DG---ALYFSALEQIDA  363 (813)
Q Consensus       302 ~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~--~~~~-----------~~~~~~~~~~~~--~~---~L~i~~v~~~D~  363 (813)
                      +....+.+|+.++|.|..........+.|||-  |+..           ......|+.+..  ++   .|.|.+++++|+
T Consensus         6 P~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Ds   85 (114)
T d3bp5a1           6 PAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDS   85 (114)
T ss_dssp             SSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGGGC
T ss_pred             CCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCcCCC
Confidence            34556789999999998654445567899972  2211           012233444332  22   599999999999


Q ss_pred             eeeEEEEeee
Q psy14896        364 GNYSCNVQSK  373 (813)
Q Consensus       364 G~Y~C~a~n~  373 (813)
                      |.|.|.+...
T Consensus        86 g~YyCa~~~~   95 (114)
T d3bp5a1          86 GIYLCGAISL   95 (114)
T ss_dssp             EEEEEEEECS
T ss_pred             eEEEEEEEeC
Confidence            9999988643

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.61  E-value=7.7e-05  Score=57.80  Aligned_cols=88  Identities=18%  Similarity=0.285  Sum_probs=54.1

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeC---CeEEEcCCcc
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSG---GNLIINDPRQ  265 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~  265 (813)
                      +|.|...|. ..|..|     ++|+|.|.... ....+.+||+|.......       .. ......   ..+.|.+ ++
T Consensus         2 KPsLsa~P~-~~V~~G-----~~VTl~C~~~~-~~~~f~L~keg~~~~~~~-------~~-~~~~~~~~~a~F~l~~-v~   65 (96)
T d1nkra1           2 KPSLLAHPG-PLVKSE-----ETVILQCWSDV-MFEHFLLHREGMFNDTLR-------LI-GEHHDGVSKANFSISR-MT   65 (96)
T ss_dssp             CCEEEEESC-SEEETT-----CCEEEEEEESS-CCSEEEEEEESSSCEEEE-------EE-CEEETTEEEEEEEESS-CC
T ss_pred             CCEEEeeCC-CccCCC-----CcEEEEECCCC-CCCEEEEEECCCcCCcee-------ee-eeecCCceEEEEEEcc-cC
Confidence            577777774 445566     56999999764 567999999985321000       00 000111   1355555 58


Q ss_pred             ccCCeeEEEEeecC----ceeeEeeeeEEee
Q psy14896        266 VEDRGSYHCKASNK----FGSIISESVQLAF  292 (813)
Q Consensus       266 ~~d~G~Y~C~a~n~----~g~~~s~~~~l~v  292 (813)
                      .+|+|.|+|.....    ..+..|..++|.|
T Consensus        66 ~~~~G~Y~C~y~~~~~p~~wS~pSdpLeL~V   96 (96)
T d1nkra1          66 QDLAGTYRCYGSVTHSPYQVSAPSDPLDIVI   96 (96)
T ss_dssp             GGGCEEEEEEEEBTTBTTCCCCCCCCEEEEE
T ss_pred             cccCeEEEEEEEcCCCCCcccCCCCCEEEEC
Confidence            99999999987643    2344466676654

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.60  E-value=7.8e-05  Score=60.33  Aligned_cols=83  Identities=16%  Similarity=0.263  Sum_probs=49.8

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeec--cccccccccc--ccccCCCccEEe--e----CCeEEEc
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKE--DYVQDRLVAN--LIDPLSDKRFTL--S----GGNLIIN  261 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~--g~~l~~~~~~--~~~~~~~~~~~~--~----~~~l~i~  261 (813)
                      ++..|..+.+.+|     ++|+|.|...+.....+.|||.  |+.+......  ........+...  .    ..+|.|.
T Consensus         3 V~Q~P~~v~v~~G-----~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~   77 (113)
T d2bnqd1           3 VTQIPAALSVPEG-----ENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIA   77 (113)
T ss_dssp             EECSSSEEEEETT-----CCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEES
T ss_pred             cEeeCCEEEEcCC-----CCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeee
Confidence            3455777888777     6799999998766668999994  3322111000  000001111111  1    1257777


Q ss_pred             CCccccCCeeEEEEeecCc
Q psy14896        262 DPRQVEDRGSYHCKASNKF  280 (813)
Q Consensus       262 ~~~~~~d~G~Y~C~a~n~~  280 (813)
                      +. +.+|+|.|.|.+....
T Consensus        78 ~~-~~~Dsg~YyCa~~~~~   95 (113)
T d2bnqd1          78 AS-QPGDSATYLCAVRPTS   95 (113)
T ss_dssp             SC-CGGGCEEEEEEEEESS
T ss_pred             cC-CCCCCcEEeEeEecCC
Confidence            75 8999999999987443

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.60  E-value=0.0003  Score=56.36  Aligned_cols=80  Identities=16%  Similarity=0.263  Sum_probs=47.3

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeec--ccccccccc-----c-ccccCCCccEEee----CCeEE
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKE--DYVQDRLVA-----N-LIDPLSDKRFTLS----GGNLI  259 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~--g~~l~~~~~-----~-~~~~~~~~~~~~~----~~~l~  259 (813)
                      ++..|...++.+|     ++++|.|...+ ....+.|||.  |+.......     . ......+......    ..+|.
T Consensus         4 V~Q~P~~~~~~~G-----~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~   77 (110)
T d2aq2a1           4 VTQSPRNKVAVTG-----EKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLI   77 (110)
T ss_dssp             EEEECSEEEECTT-----CCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEE
T ss_pred             EEEeCCeEEEcCC-----CCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEE
Confidence            4455777887777     77999999865 3568999994  332211110     0 0011111111111    23467


Q ss_pred             EcCCccccCCeeEEEEeec
Q psy14896        260 INDPRQVEDRGSYHCKASN  278 (813)
Q Consensus       260 i~~~~~~~d~G~Y~C~a~n  278 (813)
                      |.+. +.+|+|.|.|.+..
T Consensus        78 I~~~-~~~Dsa~YyCa~~~   95 (110)
T d2aq2a1          78 LESA-TPSQTSVYFCASGG   95 (110)
T ss_dssp             ESSC-CGGGCEEEEEEEEE
T ss_pred             ECCC-CHhhCEEEEEeeCC
Confidence            7775 89999999998764

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.60  E-value=5.6e-05  Score=60.01  Aligned_cols=62  Identities=26%  Similarity=0.465  Sum_probs=42.6

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeC--CcccC----------C--Ccee----eecceEEEECCCCCCCCEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRR--GSPLP----------R--NAYF----ENFNRILTIPNVKVEDQGEYICRA  743 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~--g~~l~----------~--~~~~----~~~~~~L~i~~v~~~d~G~Y~C~a  743 (813)
                      ..+.+|++|+|.|..... ...+.|||-  |..+.          .  ..++    ......|.|.+++.+|+|.|.|.+
T Consensus        10 l~~~~G~~vtl~C~~s~~-~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~   88 (104)
T d1yqvl1          10 MSASPGEKVTMTCSASSS-VNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAATYYCQQ   88 (104)
T ss_dssp             EEECTTCCEEEEEEESSC-CSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             EEECCCCCEEEEEEeCCC-CCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCCeEEEEe
Confidence            567899999999997643 346899984  22110          0  0111    122357999999999999999976


Q ss_pred             E
Q psy14896        744 S  744 (813)
Q Consensus       744 ~  744 (813)
                      .
T Consensus        89 ~   89 (104)
T d1yqvl1          89 W   89 (104)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=97.59  E-value=4.1e-05  Score=61.38  Aligned_cols=64  Identities=22%  Similarity=0.376  Sum_probs=44.5

Q ss_pred             cCCCCCCeEEEEEEecCC-CCCeEEEEeC--CcccC------------CCcee----eecceEEEECCCCCCCCEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGY-PVPSYNWTRR--GSPLP------------RNAYF----ENFNRILTIPNVKVEDQGEYICR  742 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~-P~p~i~W~k~--g~~l~------------~~~~~----~~~~~~L~i~~v~~~d~G~Y~C~  742 (813)
                      ..+.+|++|+|.|.+.+. ....+.|||.  |..+.            ...++    ......|+|.+++.+|+|.|.|.
T Consensus        11 ~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Dsa~YyCa   90 (108)
T d2fx7l1          11 QSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFAVYYCQ   90 (108)
T ss_dssp             EEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEE
T ss_pred             EEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecccEEEeee
Confidence            567899999999998654 3457999984  33110            00111    12234699999999999999998


Q ss_pred             EEc
Q psy14896        743 ASN  745 (813)
Q Consensus       743 a~N  745 (813)
                      +.+
T Consensus        91 ~~~   93 (108)
T d2fx7l1          91 QYG   93 (108)
T ss_dssp             ECS
T ss_pred             cCC
Confidence            753

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.59  E-value=2.2e-05  Score=63.49  Aligned_cols=64  Identities=19%  Similarity=0.304  Sum_probs=45.4

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeC--CcccC------CCc------e--e----eecceEEEECCCCCCCCEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRR--GSPLP------RNA------Y--F----ENFNRILTIPNVKVEDQGEYIC  741 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~--g~~l~------~~~------~--~----~~~~~~L~i~~v~~~d~G~Y~C  741 (813)
                      ..+.+|++|+|+|...+.....+.|||-  |....      ...      +  .    ......|+|.+++.+|+|.|.|
T Consensus         9 ~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   88 (110)
T d1u3ha1           9 LTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFC   88 (110)
T ss_dssp             EEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSCSEEEE
T ss_pred             EEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCceeEee
Confidence            5578999999999988655567999984  33221      000      0  0    1223479999999999999999


Q ss_pred             EEEc
Q psy14896        742 RASN  745 (813)
Q Consensus       742 ~a~N  745 (813)
                      .+.-
T Consensus        89 a~~~   92 (110)
T d1u3ha1          89 AASA   92 (110)
T ss_dssp             CCEE
T ss_pred             eecC
Confidence            8863

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=0.00012  Score=59.27  Aligned_cols=81  Identities=22%  Similarity=0.384  Sum_probs=49.4

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeecc-CCCCeEEEeeccc--ccccc------c--ccccccCCCccEEee----CC
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGG-YPNPSYEWFKEDY--VQDRL------V--ANLIDPLSDKRFTLS----GG  256 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g-~P~p~v~W~k~g~--~l~~~------~--~~~~~~~~~~~~~~~----~~  256 (813)
                      ++..|.+.++.+|     ++|+|.|.+.+ .....+.|||...  .+...      .  ..........++...    ..
T Consensus         3 ~~~sP~~~t~~~G-----~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~   77 (114)
T d1akjd_           3 FRVSPLDRTWNLG-----ETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTF   77 (114)
T ss_dssp             EEEECCSCCCCTT-----CCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEE
T ss_pred             eeECCCcEeccCC-----CcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCCh
Confidence            5566778877666     77999999864 3445799999542  11100      0  001111222334332    22


Q ss_pred             eEEEcCCccccCCeeEEEEeec
Q psy14896        257 NLIINDPRQVEDRGSYHCKASN  278 (813)
Q Consensus       257 ~l~i~~~~~~~d~G~Y~C~a~n  278 (813)
                      +|.|.+. +.+|+|.|.|.+..
T Consensus        78 ~L~I~~l-~~~Dsg~YyCa~~~   98 (114)
T d1akjd_          78 VLTLSDF-RRENEGYYFCSALS   98 (114)
T ss_dssp             EEEESSC-CGGGCEEEEEEEEE
T ss_pred             hcEEccC-CCCCCEEEeEeEcC
Confidence            4777775 89999999999874

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.59  E-value=3.3e-05  Score=62.89  Aligned_cols=64  Identities=20%  Similarity=0.256  Sum_probs=45.5

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEe--CCcccC-------CCce--------e----eecceEEEECCCCCCCCEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTR--RGSPLP-------RNAY--------F----ENFNRILTIPNVKVEDQGEYI  740 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k--~g~~l~-------~~~~--------~----~~~~~~L~i~~v~~~d~G~Y~  740 (813)
                      +.+.+|++|+|.|.........+.|||  .|..+.       ....        .    ......|+|.+++.+|+|.|.
T Consensus        10 v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~Yy   89 (115)
T d1i9ea_          10 VTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAVYF   89 (115)
T ss_dssp             EEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGGCEEEE
T ss_pred             EEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccccccceec
Confidence            567899999999998766667889998  333210       0000        0    112346999999999999999


Q ss_pred             EEEEc
Q psy14896        741 CRASN  745 (813)
Q Consensus       741 C~a~N  745 (813)
                      |.+..
T Consensus        90 Ca~~~   94 (115)
T d1i9ea_          90 CAVSG   94 (115)
T ss_dssp             EEEEE
T ss_pred             ccccC
Confidence            98764

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.58  E-value=0.00012  Score=59.22  Aligned_cols=79  Identities=15%  Similarity=0.184  Sum_probs=48.6

Q ss_pred             eCCCceeecCCCccccccEEEEeeeccCCCCeEEEeec--ccccccccc--cccccCCCccEEee------CCeEEEcCC
Q psy14896        194 KQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKE--DYVQDRLVA--NLIDPLSDKRFTLS------GGNLIINDP  263 (813)
Q Consensus       194 ~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~--g~~l~~~~~--~~~~~~~~~~~~~~------~~~l~i~~~  263 (813)
                      ..|..+.+.+|     ++|+|.|.........+.|||.  |+.+.-...  .........++...      .-.|.|.+.
T Consensus         6 Q~~~~v~v~~G-----~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   80 (115)
T d1lp9e1           6 QTEGLVTLTEG-----LPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSA   80 (115)
T ss_dssp             ECCSEEEEETT-----SCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSC
T ss_pred             cCCCeEEECCC-----CCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeecccc
Confidence            34566777777     6699999987666778999985  322211100  00111122233332      224788875


Q ss_pred             ccccCCeeEEEEeec
Q psy14896        264 RQVEDRGSYHCKASN  278 (813)
Q Consensus       264 ~~~~d~G~Y~C~a~n  278 (813)
                       +.+|+|.|.|.+..
T Consensus        81 -~~~Dsg~YyCa~~~   94 (115)
T d1lp9e1          81 -QLSDSALYYCALFL   94 (115)
T ss_dssp             -CGGGCEEEEEEEEE
T ss_pred             -ccccCccceEEEEc
Confidence             89999999998764

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.58  E-value=7.3e-05  Score=60.68  Aligned_cols=74  Identities=11%  Similarity=0.102  Sum_probs=47.1

Q ss_pred             CCCceeecCCCeEEEecCCCCCCcceEEEeec--ccc-ccc------------cCCccEEEccCc---cEEEeeeeecCC
Q psy14896        302 RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARD--YFP-NFV------------EEDKRVFVSYDG---ALYFSALEQIDA  363 (813)
Q Consensus       302 ~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~--~~~-~~~------------~~~~~~~~~~~~---~L~i~~v~~~D~  363 (813)
                      +....+.+|+.++|.|....+.....+.|||-  +.. ..+            ....+......+   .|.|.+++.+|+
T Consensus         7 ~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   86 (114)
T d2ak4d1           7 QTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVVDS   86 (114)
T ss_dssp             CCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCGGGC
T ss_pred             CCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccccccC
Confidence            34456788999999998544445567899972  222 111            001112222222   699999999999


Q ss_pred             eeeEEEEeeecc
Q psy14896        364 GNYSCNVQSKVS  375 (813)
Q Consensus       364 G~Y~C~a~n~~g  375 (813)
                      |.|.|.+....+
T Consensus        87 g~YyCa~~~~~~   98 (114)
T d2ak4d1          87 AVYFCALSGFYN   98 (114)
T ss_dssp             EEEEEEEECSBT
T ss_pred             CCceEeCCCCCC
Confidence            999998765443

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.57  E-value=6.3e-05  Score=61.18  Aligned_cols=72  Identities=18%  Similarity=0.241  Sum_probs=48.5

Q ss_pred             CCCceeecCCCeEEEecCCCCCCcceEEEee--cccccc-c------------cCCccEEEccC-----ccEEEeeeeec
Q psy14896        302 RAPEIGNQNWGKAMFCDPPTNYPGVNYYWAR--DYFPNF-V------------EEDKRVFVSYD-----GALYFSALEQI  361 (813)
Q Consensus       302 ~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k--~~~~~~-~------------~~~~~~~~~~~-----~~L~i~~v~~~  361 (813)
                      +....+.+|+.++|.|..........+.|||  .|+... +            ....|+....+     .+|+|.+++.+
T Consensus         7 p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~   86 (116)
T d1tvda_           7 SPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRTE   86 (116)
T ss_dssp             SCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCGG
T ss_pred             CCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCcccc
Confidence            4556778999999999864455667899997  222210 1            11234443221     16999999999


Q ss_pred             CCeeeEEEEeee
Q psy14896        362 DAGNYSCNVQSK  373 (813)
Q Consensus       362 D~G~Y~C~a~n~  373 (813)
                      |+|.|.|.+...
T Consensus        87 Dsg~YyCa~~~~   98 (116)
T d1tvda_          87 DSATYYCAFTLP   98 (116)
T ss_dssp             GCEEEEEEEECT
T ss_pred             ccccceeeEecC
Confidence            999999987643

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.57  E-value=8.3e-05  Score=58.24  Aligned_cols=67  Identities=13%  Similarity=0.238  Sum_probs=41.5

Q ss_pred             cccEEEEeeeccC-C-CCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCc
Q psy14896        209 LNDITLSCYAGGY-P-NPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKF  280 (813)
Q Consensus       209 g~~v~l~C~~~g~-P-~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~  280 (813)
                      |+.++|.|.+.|. | ...|+|++||+++............+..|.. ...|.+    ..++.+.|+|++.+..
T Consensus        18 ~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~-~s~l~v----~~~~~~~ytC~V~H~s   86 (99)
T d1lk2b_          18 GKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYI-LAHTEF----TPTETDTYACRVKHDS   86 (99)
T ss_dssp             TSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEE-EEEEEE----CCCSSCCEEEEEECTT
T ss_pred             CCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEE-EEEeEe----cCcCCCEEEEEEEeCC
Confidence            4779999999984 5 4589999999877543322222233333322 112232    3456778999998753

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=6.1e-05  Score=60.53  Aligned_cols=70  Identities=14%  Similarity=0.217  Sum_probs=45.0

Q ss_pred             ceeecCCCeEEEecCCCCCC-cceEEEeecc--cc----------ccccCCccEEEcc---Cc--cEEEeeeeecCCeee
Q psy14896        305 EIGNQNWGKAMFCDPPTNYP-GVNYYWARDY--FP----------NFVEEDKRVFVSY---DG--ALYFSALEQIDAGNY  366 (813)
Q Consensus       305 ~~~~~~~~~~l~C~~~~~~p-~~~v~W~k~~--~~----------~~~~~~~~~~~~~---~~--~L~i~~v~~~D~G~Y  366 (813)
                      ....+|+.++|.|....... ...+.|+|..  ..          .......|..+..   .+  +|.|.+++.+|+|.|
T Consensus         6 v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG~Y   85 (108)
T d1hkfa_           6 LQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGHY   85 (108)
T ss_dssp             EEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             EEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCEEE
Confidence            45678999999998643333 3567898732  11          0111223443322   12  699999999999999


Q ss_pred             EEEEeeec
Q psy14896        367 SCNVQSKV  374 (813)
Q Consensus       367 ~C~a~n~~  374 (813)
                      .|.+....
T Consensus        86 ~C~v~~~~   93 (108)
T d1hkfa_          86 WCRIYRPS   93 (108)
T ss_dssp             EEEEECTT
T ss_pred             EEEEecCC
Confidence            99987543

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.56  E-value=0.00016  Score=58.12  Aligned_cols=88  Identities=18%  Similarity=0.170  Sum_probs=52.8

Q ss_pred             CCceeecCCCeEEEecCCCCC-CcceEEEeec--cccc----------cccCCccEEEccC---ccEEEeeeeecCCeee
Q psy14896        303 APEIGNQNWGKAMFCDPPTNY-PGVNYYWARD--YFPN----------FVEEDKRVFVSYD---GALYFSALEQIDAGNY  366 (813)
Q Consensus       303 ~~~~~~~~~~~~l~C~~~~~~-p~~~v~W~k~--~~~~----------~~~~~~~~~~~~~---~~L~i~~v~~~D~G~Y  366 (813)
                      ....+.+|+.++|.|...... ....+.|||-  ++..          ......+.....+   ..|.|.++..+|+|.|
T Consensus         8 ps~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~Y   87 (114)
T d2rhea_           8 PSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADY   87 (114)
T ss_dssp             SEEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             CcEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceE
Confidence            345677899999999864333 3467899963  2110          0111223333332   2699999999999999


Q ss_pred             EEEEeeeccccCCCCCceeeEEcc
Q psy14896        367 SCNVQSKVSDTGRNGPFFPLKVFP  390 (813)
Q Consensus       367 ~C~a~n~~g~~~~~s~~~~l~v~~  390 (813)
                      .|.+............-..|+|..
T Consensus        88 yCA~~~~~~~~~~FG~GT~LtVlg  111 (114)
T d2rhea_          88 YCAAWNDSLDEPGFGGGTKLTVLG  111 (114)
T ss_dssp             EEEEEETTTTEEEECCCEEEEECS
T ss_pred             EEeecCCCCCCCEECCCeEEEECC
Confidence            998764321111122335666654

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.56  E-value=1.4e-05  Score=62.39  Aligned_cols=67  Identities=16%  Similarity=0.384  Sum_probs=46.6

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeC--CcccC------------CCceee------ecceEEEECCCCCCCCEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRR--GSPLP------------RNAYFE------NFNRILTIPNVKVEDQGEYIC  741 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~--g~~l~------------~~~~~~------~~~~~L~i~~v~~~d~G~Y~C  741 (813)
                      ..|.+|++|+|+|...+. ...+.|||.  |+.+.            ...++.      .....|+|.+++.+|+|.|.|
T Consensus         3 lsV~eG~~vtL~C~~~~~-~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   81 (96)
T d1ymmd1           3 LSIQEGENATMNCSYKTS-INNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFC   81 (96)
T ss_dssp             CCCSSCCCCCBCCBCSSC-EEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCEE
T ss_pred             ceECCCCCEEEEEEEeCC-cccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEeE
Confidence            568899999999988753 458999982  33221            001111      112469999999999999999


Q ss_pred             EEEcCCCc
Q psy14896        742 RASNDRSA  749 (813)
Q Consensus       742 ~a~N~~G~  749 (813)
                      .+....|.
T Consensus        82 A~~~~~g~   89 (96)
T d1ymmd1          82 ATDTTSGT   89 (96)
T ss_dssp             EEEETTSC
T ss_pred             eEecCCCC
Confidence            88765553

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=4.2e-05  Score=63.09  Aligned_cols=64  Identities=22%  Similarity=0.339  Sum_probs=43.0

Q ss_pred             cCCCCCCeEEEEEEecCC----C---CCeEEEEeCCcccC--------CC---------cee------eecceEEEECCC
Q psy14896        682 EAPKAGDKVRLECVAFGY----P---VPSYNWTRRGSPLP--------RN---------AYF------ENFNRILTIPNV  731 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~----P---~p~i~W~k~g~~l~--------~~---------~~~------~~~~~~L~i~~v  731 (813)
                      +++.+|++|+|.|.....    .   ...+.|++.+..-.        .+         .++      ...+.+|+|.++
T Consensus        11 vtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   90 (121)
T d2g5ra1          11 VTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSIRDA   90 (121)
T ss_dssp             EEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEECSC
T ss_pred             EEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEECCC
Confidence            568899999999988521    1   13688998633110        00         011      122457999999


Q ss_pred             CCCCCEEEEEEEEc
Q psy14896        732 KVEDQGEYICRASN  745 (813)
Q Consensus       732 ~~~d~G~Y~C~a~N  745 (813)
                      +.+|+|.|.|.+..
T Consensus        91 ~~~DsG~Y~C~v~~  104 (121)
T d2g5ra1          91 RMSDAGRYFFRMEK  104 (121)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             ChHHCEEEEEEEEe
Confidence            99999999999965

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.53  E-value=2.5e-05  Score=61.36  Aligned_cols=67  Identities=12%  Similarity=0.116  Sum_probs=45.1

Q ss_pred             ccCCCceEEeCCCCCCCc-cEEEEccCCCCCcccCCCeEEEeeCccE---EEEeecccCCeeEEEEEEeee
Q psy14896        581 NQNWGKAMFCDPPTNYPG-VNYYWARDYFPNFVEEDKRVFVSYDGAL---YFSALEQIDAGNYSCNVQSKV  647 (813)
Q Consensus       581 ~~g~~~~l~C~~~~~~p~-~~v~W~k~~~~~~~~~~~~~~~~~~~~L---~i~~~~~~d~G~Y~C~a~n~~  647 (813)
                      ..|+.++|.|.+.+.+|. ..|+|++||.++............+|++   ....+..++.+.|+|.+.+..
T Consensus        16 ~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~s   86 (99)
T d1lk2b_          16 ENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHDS   86 (99)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEEEEECTT
T ss_pred             cCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEEEEEeCC
Confidence            457778999999555565 6899999997643222222334556663   333456677889999998864

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=97.50  E-value=0.0002  Score=57.42  Aligned_cols=75  Identities=24%  Similarity=0.405  Sum_probs=47.2

Q ss_pred             eeCCCceeecCCCccccccEEEEeeecc--CCCCeEEEeecc--cccccccccccccCCCccEEee----C--CeEEEcC
Q psy14896        193 IKQPTDVVFDLSKRSILNDITLSCYAGG--YPNPSYEWFKED--YVQDRLVANLIDPLSDKRFTLS----G--GNLIIND  262 (813)
Q Consensus       193 ~~~p~~~~v~~g~~~~g~~v~l~C~~~g--~P~p~v~W~k~g--~~l~~~~~~~~~~~~~~~~~~~----~--~~l~i~~  262 (813)
                      ...|..+.+.+|     ++|+|.|...+  .....+.|||..  +...      .....+.++...    .  -+|.|.+
T Consensus         3 ~Q~P~s~t~~~G-----~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~------~~~~~~gr~~~~~~~~~~~~~L~I~~   71 (112)
T d1sq2n_           3 DQTPRSVTKETG-----ESLTINCVLRDASYALGSTCWYRKKSGEGNE------ESISKGGRYVETVNSGSKSFSLRIND   71 (112)
T ss_dssp             EEECSEEEECTT-----CCEEEEEEECSCSSCCCCEEEEEEETTSCCC------EECCCBTTEEEEEETTTTEEEEEECS
T ss_pred             EecCCEEEEcCC-----CCEEEEEEECCCcccCCceEEEEeeccceee------eeeccCCcEeeEEecCCceeeeEecC
Confidence            344666777666     67999999864  245689999853  1111      111223333322    1  2577777


Q ss_pred             CccccCCeeEEEEeecC
Q psy14896        263 PRQVEDRGSYHCKASNK  279 (813)
Q Consensus       263 ~~~~~d~G~Y~C~a~n~  279 (813)
                      . +.+|+|.|.|.+...
T Consensus        72 l-~~~Dsa~YyCA~~~~   87 (112)
T d1sq2n_          72 L-TVEDGGTYRCGLGVA   87 (112)
T ss_dssp             C-CGGGCEEEEEEECBT
T ss_pred             C-cCccCEEEeEEEecC
Confidence            5 999999999987643

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.50  E-value=7.7e-05  Score=60.04  Aligned_cols=64  Identities=19%  Similarity=0.388  Sum_probs=44.7

Q ss_pred             cCCCCCCeEEEEEEecCCC--CCeEEEEeC--CcccC------------CCcee----eecceEEEECCCCCCCCEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYP--VPSYNWTRR--GSPLP------------RNAYF----ENFNRILTIPNVKVEDQGEYIC  741 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P--~p~i~W~k~--g~~l~------------~~~~~----~~~~~~L~i~~v~~~d~G~Y~C  741 (813)
                      +.+.+|++|+|+|.+.+.-  ...+.|||-  |..+.            ...++    ......|+|.+++.+|+|.|.|
T Consensus        10 ~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~YyC   89 (111)
T d1rzfl1          10 VSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEADYYC   89 (111)
T ss_dssp             EEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEE
T ss_pred             eEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcceEE
Confidence            6788999999999987533  346999973  22110            00111    2224579999999999999999


Q ss_pred             EEEc
Q psy14896        742 RASN  745 (813)
Q Consensus       742 ~a~N  745 (813)
                      .+..
T Consensus        90 A~~~   93 (111)
T d1rzfl1          90 GTWD   93 (111)
T ss_dssp             EEEE
T ss_pred             eecC
Confidence            8764

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=97.50  E-value=0.00011  Score=57.31  Aligned_cols=60  Identities=23%  Similarity=0.320  Sum_probs=42.5

Q ss_pred             CCCCCeEEEEEEecCC-C-CCeEEEEeCCcccCCCcee----eec------ceEEEECCCCCCCCEEEEEEEEcC
Q psy14896        684 PKAGDKVRLECVAFGY-P-VPSYNWTRRGSPLPRNAYF----ENF------NRILTIPNVKVEDQGEYICRASND  746 (813)
Q Consensus       684 ~~~G~~v~l~C~~~g~-P-~p~i~W~k~g~~l~~~~~~----~~~------~~~L~i~~v~~~d~G~Y~C~a~N~  746 (813)
                      +..|+.++|.|.+.|+ | ...|+|++||+++..+...    ...      .+.|.+.   .++.+.|+|++...
T Consensus        14 ~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~---~~~~~~ytC~V~H~   85 (100)
T d1muja1          14 VLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFI---PSDDDIYDCKVEHW   85 (100)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEEC---CCTTCCEEEEEECT
T ss_pred             cccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEc---CCCCCEEEEEEEEC
Confidence            4568899999999987 3 3589999999998754321    111      2235553   45677899999875

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.49  E-value=8.4e-05  Score=59.79  Aligned_cols=62  Identities=24%  Similarity=0.375  Sum_probs=42.5

Q ss_pred             cCCCCCCeEEEEEEecCCC-----CCeEEEEeC--CcccC----C--------Ccee----eecceEEEECCCCCCCCEE
Q psy14896        682 EAPKAGDKVRLECVAFGYP-----VPSYNWTRR--GSPLP----R--------NAYF----ENFNRILTIPNVKVEDQGE  738 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P-----~p~i~W~k~--g~~l~----~--------~~~~----~~~~~~L~i~~v~~~d~G~  738 (813)
                      ..+.+|++|+|+|.+++.-     ...+.||+.  |..+.    .        ..++    ......|+|.+++.+|+|.
T Consensus        11 lsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~~DsAv   90 (112)
T d1mjul1          11 VPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEAEDVGV   90 (112)
T ss_dssp             EEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCGGGCEE
T ss_pred             EEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccccCCce
Confidence            5678999999999987632     346999973  33211    0        0011    1223469999999999999


Q ss_pred             EEEEE
Q psy14896        739 YICRA  743 (813)
Q Consensus       739 Y~C~a  743 (813)
                      |.|..
T Consensus        91 YyCa~   95 (112)
T d1mjul1          91 YYCLQ   95 (112)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99954

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.49  E-value=0.00038  Score=55.65  Aligned_cols=81  Identities=23%  Similarity=0.384  Sum_probs=47.2

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccCC-----CCeEEEeec--cccccccccc--ccccCCCccEEee--C--CeE
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYP-----NPSYEWFKE--DYVQDRLVAN--LIDPLSDKRFTLS--G--GNL  258 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P-----~p~v~W~k~--g~~l~~~~~~--~~~~~~~~~~~~~--~--~~l  258 (813)
                      ++..|..+.+.+|     ++|+|.|.+++..     ..-+.||+.  |+.+......  ........++...  +  ..|
T Consensus         4 lTQsP~sls~~~G-----~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L   78 (112)
T d1ncwl1           4 MTQSPKTISVTIG-----QPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTL   78 (112)
T ss_dssp             EEEECSEEEEETT-----SCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEE
T ss_pred             EeCcCCEEEECCC-----CCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEE
Confidence            4555777887777     7799999975432     245999986  3322111100  0111122333322  1  247


Q ss_pred             EEcCCccccCCeeEEEEeec
Q psy14896        259 IINDPRQVEDRGSYHCKASN  278 (813)
Q Consensus       259 ~i~~~~~~~d~G~Y~C~a~n  278 (813)
                      .|.+. +.+|+|.|.|...+
T Consensus        79 ~I~~~-~~eDsAvYYC~~~~   97 (112)
T d1ncwl1          79 KISRV-EAEDLGVYYCWQGT   97 (112)
T ss_dssp             EESSC-CGGGCEEEEEEECS
T ss_pred             EECcc-ccCcCEeEEEEcCC
Confidence            77775 99999999996543

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=97.49  E-value=0.00019  Score=57.82  Aligned_cols=74  Identities=20%  Similarity=0.442  Sum_probs=47.1

Q ss_pred             eeCCCceeecCCCccccccEEEEeeecc--CCCCeEEEeecc--cccccccccccccCCCccEEee----CC--eEEEcC
Q psy14896        193 IKQPTDVVFDLSKRSILNDITLSCYAGG--YPNPSYEWFKED--YVQDRLVANLIDPLSDKRFTLS----GG--NLIIND  262 (813)
Q Consensus       193 ~~~p~~~~v~~g~~~~g~~v~l~C~~~g--~P~p~v~W~k~g--~~l~~~~~~~~~~~~~~~~~~~----~~--~l~i~~  262 (813)
                      +..|..+.+.+|     ++|+|+|.+++  .+...+.|||..  .....      -.....++...    ..  +|.|.+
T Consensus         4 ~Q~P~s~~~~~G-----~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~------~~~~~~~~~~~~~~~~~~~~L~I~~   72 (113)
T d1vesa_           4 DQTPRTATKETG-----ESLTINCVLRDASFELKDTGWYRTKLGSTNEQ------SISIGGRYVETVNKGSKSFSLRISD   72 (113)
T ss_dssp             EEECSEEEECTT-----CCEEEEEEEESCSSCCCEEEEEEEETTCCCCE------ECCCBTTEEEEEETTTTEEEEEECS
T ss_pred             EeeCCEEEEcCC-----CCEEEEEEECCCcccCCccceeeeecccccee------eeeecccccceeECCCCceeeeecc
Confidence            445677777776     77999999864  345679999853  22111      11222333321    11  477777


Q ss_pred             CccccCCeeEEEEeec
Q psy14896        263 PRQVEDRGSYHCKASN  278 (813)
Q Consensus       263 ~~~~~d~G~Y~C~a~n  278 (813)
                      . +.+|+|.|.|.+..
T Consensus        73 l-~~~Dsa~YyCa~~~   87 (113)
T d1vesa_          73 L-RVEDSGTYKCQAFY   87 (113)
T ss_dssp             C-CGGGCEEEEEEEEE
T ss_pred             c-ccCCcceEeeeeec
Confidence            5 99999999999864

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.48  E-value=0.00016  Score=58.77  Aligned_cols=73  Identities=14%  Similarity=0.153  Sum_probs=47.0

Q ss_pred             CCCceeecCCCeEEEecCCCCCCcceEEEeec--cccc-cc----------cCCccEEEcc--C---ccEEEeeeeecCC
Q psy14896        302 RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARD--YFPN-FV----------EEDKRVFVSY--D---GALYFSALEQIDA  363 (813)
Q Consensus       302 ~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~--~~~~-~~----------~~~~~~~~~~--~---~~L~i~~v~~~D~  363 (813)
                      +....+.+|+.++|.|....+.....+.|||-  |+.. .+          ....+.....  .   ..|.|.+++.+|+
T Consensus         6 p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   85 (115)
T d1fo0a_           6 QTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDS   85 (115)
T ss_dssp             CCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             CCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCcccc
Confidence            34456789999999998645555567899973  2211 00          0011222221  1   2599999999999


Q ss_pred             eeeEEEEeeec
Q psy14896        364 GNYSCNVQSKV  374 (813)
Q Consensus       364 G~Y~C~a~n~~  374 (813)
                      |.|.|.+....
T Consensus        86 a~YyCa~~~~~   96 (115)
T d1fo0a_          86 AVYFCAMRGDY   96 (115)
T ss_dssp             EEEEEEEECCC
T ss_pred             ccccceeecCC
Confidence            99999886543

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.48  E-value=5.1e-05  Score=61.24  Aligned_cols=64  Identities=17%  Similarity=0.239  Sum_probs=46.1

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeC--CcccC-------C-C----cee------eecceEEEECCCCCCCCEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRR--GSPLP-------R-N----AYF------ENFNRILTIPNVKVEDQGEYIC  741 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~--g~~l~-------~-~----~~~------~~~~~~L~i~~v~~~d~G~Y~C  741 (813)
                      ..+.+|++|+|.|...+.....+.|||-  |+.+.       . .    .++      ......|.|.+++.+|+|.|.|
T Consensus        10 ~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   89 (111)
T d1bd2d1          10 LSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGDSAVYFC   89 (111)
T ss_dssp             EEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEE
T ss_pred             EEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccccEEEEe
Confidence            5578999999999988776678999983  33221       0 0    011      1224579999999999999999


Q ss_pred             EEEc
Q psy14896        742 RASN  745 (813)
Q Consensus       742 ~a~N  745 (813)
                      .+..
T Consensus        90 a~~~   93 (111)
T d1bd2d1          90 AAME   93 (111)
T ss_dssp             EEES
T ss_pred             eccC
Confidence            8764

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.47  E-value=9e-05  Score=59.47  Aligned_cols=64  Identities=22%  Similarity=0.345  Sum_probs=43.4

Q ss_pred             cCCCCCCeEEEEEEecCCC-----CCeEEEEeC--CcccC------------CCcee----eecceEEEECCCCCCCCEE
Q psy14896        682 EAPKAGDKVRLECVAFGYP-----VPSYNWTRR--GSPLP------------RNAYF----ENFNRILTIPNVKVEDQGE  738 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P-----~p~i~W~k~--g~~l~------------~~~~~----~~~~~~L~i~~v~~~d~G~  738 (813)
                      ..+.+|++|+|+|.+.+..     ..-+.||+.  |+.+.            ...++    ...+..|+|.+++.+|+|.
T Consensus        11 ls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~eDsAv   90 (112)
T d1ncwl1          11 ISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEAEDLGV   90 (112)
T ss_dssp             EEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             EEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccccCcCEe
Confidence            5678999999999876433     235999974  33210            01112    1223479999999999999


Q ss_pred             EEEEEEc
Q psy14896        739 YICRASN  745 (813)
Q Consensus       739 Y~C~a~N  745 (813)
                      |.|...+
T Consensus        91 YYC~~~~   97 (112)
T d1ncwl1          91 YYCWQGT   97 (112)
T ss_dssp             EEEEECS
T ss_pred             EEEEcCC
Confidence            9996543

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.47  E-value=9.9e-05  Score=59.21  Aligned_cols=65  Identities=25%  Similarity=0.395  Sum_probs=43.8

Q ss_pred             cCCCCCCeEEEEEEecCC-C---CCeEEEEeC--CcccC------------CCcee----eecceEEEECCCCCCCCEEE
Q psy14896        682 EAPKAGDKVRLECVAFGY-P---VPSYNWTRR--GSPLP------------RNAYF----ENFNRILTIPNVKVEDQGEY  739 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~-P---~p~i~W~k~--g~~l~------------~~~~~----~~~~~~L~i~~v~~~d~G~Y  739 (813)
                      ..+.+|++|+|+|.+++. .   ...+.|||.  |..+.            ...++    ......|+|.+++.+|+|.|
T Consensus        11 ~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~~DsA~Y   90 (111)
T d2gsia1          11 LAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEEEDAATY   90 (111)
T ss_dssp             EEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             EEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccccCCceE
Confidence            567899999999987642 2   224899984  33210            01122    12245799999999999999


Q ss_pred             EEEEEcC
Q psy14896        740 ICRASND  746 (813)
Q Consensus       740 ~C~a~N~  746 (813)
                      .|.+.+.
T Consensus        91 yCa~~~~   97 (111)
T d2gsia1          91 YCSHIRE   97 (111)
T ss_dssp             EEEECSS
T ss_pred             EEEECCC
Confidence            9976543

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.46  E-value=0.00019  Score=57.76  Aligned_cols=79  Identities=14%  Similarity=0.309  Sum_probs=46.0

Q ss_pred             eCCCceeecCCCccccccEEEEeeeccCC-CCeEEEeec--ccccccccccc--cccCCCccEEee----CCeEEEcCCc
Q psy14896        194 KQPTDVVFDLSKRSILNDITLSCYAGGYP-NPSYEWFKE--DYVQDRLVANL--IDPLSDKRFTLS----GGNLIINDPR  264 (813)
Q Consensus       194 ~~p~~~~v~~g~~~~g~~v~l~C~~~g~P-~p~v~W~k~--g~~l~~~~~~~--~~~~~~~~~~~~----~~~l~i~~~~  264 (813)
                      .+|..+.+.+|     ++|+|.|...+.. ...+.|||.  |+.+.-.....  .......+....    ...|.|.+. 
T Consensus         3 ~qP~~~~~~~G-----~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-   76 (112)
T d1kgcd1           3 TQPNSMESNEE-----EPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRA-   76 (112)
T ss_dssp             ECCSEEEEETT-----SCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSC-
T ss_pred             ECCCEEEECCC-----CCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeec-
Confidence            35666777666     7799999986533 345999994  33332111000  001111222222    124777764 


Q ss_pred             cccCCeeEEEEeec
Q psy14896        265 QVEDRGSYHCKASN  278 (813)
Q Consensus       265 ~~~d~G~Y~C~a~n  278 (813)
                      +.+|+|.|.|.+..
T Consensus        77 ~~~Dsa~YyCa~~~   90 (112)
T d1kgcd1          77 TLRDAAVYYCILPL   90 (112)
T ss_dssp             CGGGCEEEEEECCC
T ss_pred             ccccceeEeeeEec
Confidence            89999999998753

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=0.00015  Score=58.56  Aligned_cols=64  Identities=20%  Similarity=0.244  Sum_probs=43.2

Q ss_pred             cCCCCCCeEEEEEEecCC--CCCeEEEEeC--Cccc---C---C-----C----ceee------ecceEEEECCCCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGY--PVPSYNWTRR--GSPL---P---R-----N----AYFE------NFNRILTIPNVKVEDQ  736 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~--P~p~i~W~k~--g~~l---~---~-----~----~~~~------~~~~~L~i~~v~~~d~  736 (813)
                      ..+.+|++|+|.|...+.  ....+.|||.  |..+   .   .     .    .++.      ....+|+|.+++.+|+
T Consensus         9 ~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~Ds   88 (113)
T d1smoa_           9 YELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDS   88 (113)
T ss_dssp             EECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCcccC
Confidence            457889999999998642  3457899983  2211   0   0     0    0111      1124699999999999


Q ss_pred             EEEEEEEEc
Q psy14896        737 GEYICRASN  745 (813)
Q Consensus       737 G~Y~C~a~N  745 (813)
                      |.|.|.+..
T Consensus        89 g~Y~Cav~~   97 (113)
T d1smoa_          89 GLYQCVIYQ   97 (113)
T ss_dssp             EEEEEEECC
T ss_pred             ceEEEEEEC
Confidence            999998754

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.46  E-value=8.2e-05  Score=59.40  Aligned_cols=64  Identities=25%  Similarity=0.368  Sum_probs=44.3

Q ss_pred             cCCCCCCeEEEEEEecCCCC---CeEEEEeC--CcccC-----C-------Ccee----eecceEEEECCCCCCCCEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPV---PSYNWTRR--GSPLP-----R-------NAYF----ENFNRILTIPNVKVEDQGEYI  740 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~---p~i~W~k~--g~~l~-----~-------~~~~----~~~~~~L~i~~v~~~d~G~Y~  740 (813)
                      ..+.+|++|+|+|.+++...   -.+.|||-  |+.+.     .       .+++    ......|.|.+++.+|+|.|.
T Consensus        10 lsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa~Yy   89 (110)
T d1oaql_          10 LTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAIYF   89 (110)
T ss_dssp             EEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEEEE
T ss_pred             EEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccEeEE
Confidence            56789999999999975432   23889972  33211     0       0111    223457999999999999999


Q ss_pred             EEEEc
Q psy14896        741 CRASN  745 (813)
Q Consensus       741 C~a~N  745 (813)
                      |.+..
T Consensus        90 Ca~~~   94 (110)
T d1oaql_          90 CALWY   94 (110)
T ss_dssp             EEEEE
T ss_pred             EEccc
Confidence            98764

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.45  E-value=0.00032  Score=56.78  Aligned_cols=79  Identities=15%  Similarity=0.241  Sum_probs=46.4

Q ss_pred             eCCCceeecCCCccccccEEEEeeeccCCCCeEEEeec--ccccccccc----c-ccccCCCccEEee----CCeEEEcC
Q psy14896        194 KQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKE--DYVQDRLVA----N-LIDPLSDKRFTLS----GGNLIIND  262 (813)
Q Consensus       194 ~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~--g~~l~~~~~----~-~~~~~~~~~~~~~----~~~l~i~~  262 (813)
                      ..|..+.+.+|     ++|+|.|.........+.|||.  |+.......    . ........+....    +.+|.|.+
T Consensus         5 Q~~~~v~v~~G-----~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~   79 (115)
T d1i9ea_           5 QPDARVTVSEG-----ASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKAS   79 (115)
T ss_dssp             CCCSEEEEETT-----SCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESS
T ss_pred             cCCCeEEECCC-----CCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEeccc
Confidence            33456777777     6799999987655678899983  332211110    0 0000111111111    23578888


Q ss_pred             CccccCCeeEEEEeec
Q psy14896        263 PRQVEDRGSYHCKASN  278 (813)
Q Consensus       263 ~~~~~d~G~Y~C~a~n  278 (813)
                      . +.+|+|.|.|.+..
T Consensus        80 ~-~~~Dsg~YyCa~~~   94 (115)
T d1i9ea_          80 V-HWSDSAVYFCAVSG   94 (115)
T ss_dssp             C-CGGGCEEEEEEEEE
T ss_pred             c-cccccceecccccC
Confidence            5 89999999998763

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.44  E-value=0.00047  Score=54.83  Aligned_cols=76  Identities=25%  Similarity=0.356  Sum_probs=44.2

Q ss_pred             CceeecCCCccccccEEEEeeeccCCCC---eEEEeec--ccccccccc--cccccCCCccEEee----CCeEEEcCCcc
Q psy14896        197 TDVVFDLSKRSILNDITLSCYAGGYPNP---SYEWFKE--DYVQDRLVA--NLIDPLSDKRFTLS----GGNLIINDPRQ  265 (813)
Q Consensus       197 ~~~~v~~g~~~~g~~v~l~C~~~g~P~p---~v~W~k~--g~~l~~~~~--~~~~~~~~~~~~~~----~~~l~i~~~~~  265 (813)
                      ..+.+.+|     ++|+|.|..++....   -+.|||.  |+...-...  .........++..+    +.+|.|.+. +
T Consensus         8 ~slsvs~G-----~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~-~   81 (110)
T d1oaql_           8 SALTTSPG-----ETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGA-Q   81 (110)
T ss_dssp             SEEEECTT-----CEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESC-C
T ss_pred             CCEEeCCC-----CCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCC-C
Confidence            35666555     779999999753322   3899984  222211110  01112223344432    235777775 8


Q ss_pred             ccCCeeEEEEeec
Q psy14896        266 VEDRGSYHCKASN  278 (813)
Q Consensus       266 ~~d~G~Y~C~a~n  278 (813)
                      .+|+|.|.|.+..
T Consensus        82 ~~Dsa~YyCa~~~   94 (110)
T d1oaql_          82 TEDEAIYFCALWY   94 (110)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             ccccEeEEEEccc
Confidence            9999999998764

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.44  E-value=0.0004  Score=55.79  Aligned_cols=81  Identities=25%  Similarity=0.407  Sum_probs=47.1

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccC---C---CCeEEEeec--ccccccccc--cccccCCCccEEee--C--Ce
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGY---P---NPSYEWFKE--DYVQDRLVA--NLIDPLSDKRFTLS--G--GN  257 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~---P---~p~v~W~k~--g~~l~~~~~--~~~~~~~~~~~~~~--~--~~  257 (813)
                      ++..|..+.+.+|     ++|+|.|..++.   .   ..-+.|||.  |+.+.-...  .........++...  +  .+
T Consensus         4 ~tQ~P~~v~~~~G-----~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~   78 (113)
T d1q9ra1           4 MSQSPSSLAVSAG-----EKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFT   78 (113)
T ss_dssp             EEEECSEEEEETT-----SCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEE
T ss_pred             EEccCCEEEECCC-----CCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEe
Confidence            3455777888777     679999987642   1   234999995  322211100  01111222333332  2  24


Q ss_pred             EEEcCCccccCCeeEEEEeec
Q psy14896        258 LIINDPRQVEDRGSYHCKASN  278 (813)
Q Consensus       258 l~i~~~~~~~d~G~Y~C~a~n  278 (813)
                      |.|.+. +.+|+|.|.|.+.+
T Consensus        79 L~I~~l-~~~Dsa~YyCA~~~   98 (113)
T d1q9ra1          79 LTITSV-QAEDLAVYYCKQSY   98 (113)
T ss_dssp             EEESSC-CGGGCEEEEEEECS
T ss_pred             EEeccc-ccCCCeEEEecccC
Confidence            677775 99999999998763

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.43  E-value=0.00018  Score=57.94  Aligned_cols=86  Identities=16%  Similarity=0.117  Sum_probs=50.4

Q ss_pred             CCCceeecCCCeEEEecCCCCCCcceEEEeec--cccccc----------cCCccEEE--ccC---ccEEEeeeeecCCe
Q psy14896        302 RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARD--YFPNFV----------EEDKRVFV--SYD---GALYFSALEQIDAG  364 (813)
Q Consensus       302 ~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~--~~~~~~----------~~~~~~~~--~~~---~~L~i~~v~~~D~G  364 (813)
                      +....+.+|+.++|.|... ......+.|||-  |+....          ....+...  ...   .+|.|.++..+|+|
T Consensus         6 P~~~~~~~G~~vtl~C~~~-~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa   84 (110)
T d1u3ha1           6 PQSLTVWEGETAILNCSYE-NSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSA   84 (110)
T ss_dssp             CSSEEEETTSCEEEEEEEC-CTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSCS
T ss_pred             CCEEEEcCCCCEEEEEEec-CCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCce
Confidence            3456678999999999853 334457999973  222100          00111111  111   26999999999999


Q ss_pred             eeEEEEeeeccccCCCCCceeeEE
Q psy14896        365 NYSCNVQSKVSDTGRNGPFFPLKV  388 (813)
Q Consensus       365 ~Y~C~a~n~~g~~~~~s~~~~l~v  388 (813)
                      .|.|.+....+.......-..|+|
T Consensus        85 ~YyCa~~~~~~~~~~FG~GT~L~V  108 (110)
T d1u3ha1          85 TYFCAASANSGTYQRFGTGTKLQV  108 (110)
T ss_dssp             EEEECCEESSSCCCCCCSCEEEEE
T ss_pred             eEeeeecCCCCCCCEECCCeEEEE
Confidence            999987643322222233345555

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.42  E-value=0.00051  Score=55.07  Aligned_cols=78  Identities=22%  Similarity=0.363  Sum_probs=45.2

Q ss_pred             CCCceeecCCCccccccEEEEeeeccCC--CCeEEEeecc--cccccccc--cccccCCCccEEee----C--CeEEEcC
Q psy14896        195 QPTDVVFDLSKRSILNDITLSCYAGGYP--NPSYEWFKED--YVQDRLVA--NLIDPLSDKRFTLS----G--GNLIIND  262 (813)
Q Consensus       195 ~p~~~~v~~g~~~~g~~v~l~C~~~g~P--~p~v~W~k~g--~~l~~~~~--~~~~~~~~~~~~~~----~--~~l~i~~  262 (813)
                      +|..+.+.+|     ++|+|.|.+++..  ..-+.|||.-  +.+.-...  .........++...    +  ..|.|.+
T Consensus         6 QP~s~sv~~G-----~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~   80 (111)
T d1cd0a_           6 QPHSVSESPG-----KTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISG   80 (111)
T ss_dssp             CCSEEEECTT-----SCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECS
T ss_pred             cCCeeEECCC-----CCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCcccccccc
Confidence            4666777666     6799999987633  2359999852  22211000  00011122233321    1  2467777


Q ss_pred             CccccCCeeEEEEeec
Q psy14896        263 PRQVEDRGSYHCKASN  278 (813)
Q Consensus       263 ~~~~~d~G~Y~C~a~n  278 (813)
                      . +.+|+|.|.|.+.+
T Consensus        81 l-~~~Dsa~YyCA~~~   95 (111)
T d1cd0a_          81 L-KTEDEADYYCQSYD   95 (111)
T ss_dssp             C-CGGGCEEEEEEEEE
T ss_pred             C-CcccCcEEEEeecc
Confidence            5 89999999998764

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.41  E-value=0.00017  Score=57.80  Aligned_cols=63  Identities=19%  Similarity=0.361  Sum_probs=44.1

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeC--CcccC-------CCc--------ee-----eecceEEEECCCCCCCCEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRR--GSPLP-------RNA--------YF-----ENFNRILTIPNVKVEDQGEY  739 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~--g~~l~-------~~~--------~~-----~~~~~~L~i~~v~~~d~G~Y  739 (813)
                      ..+.+|++|+|+|...+. ...+.|||-  |+.+.       .+.        ++     ......|+|.+++.+|+|.|
T Consensus        11 ~~~~~G~~vtl~C~~s~~-~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   89 (110)
T d2aq2a1          11 KVAVTGEKVTLSCQQTNN-HNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATPSQTSVY   89 (110)
T ss_dssp             EEECTTCCEEEEEEESSC-CSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             EEEcCCCCEEEEEEECCC-cCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCHhhCEEE
Confidence            457899999999998753 458999983  33210       000        00     12245799999999999999


Q ss_pred             EEEEEc
Q psy14896        740 ICRASN  745 (813)
Q Consensus       740 ~C~a~N  745 (813)
                      .|.+..
T Consensus        90 yCa~~~   95 (110)
T d2aq2a1          90 FCASGG   95 (110)
T ss_dssp             EEEEEE
T ss_pred             EEeeCC
Confidence            998764

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.41  E-value=0.0002  Score=58.04  Aligned_cols=81  Identities=15%  Similarity=0.198  Sum_probs=48.3

Q ss_pred             eeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeec--cccccccc---ccccccCCCccEEe--e----CCeEEEc
Q psy14896        193 IKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKE--DYVQDRLV---ANLIDPLSDKRFTL--S----GGNLIIN  261 (813)
Q Consensus       193 ~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~--g~~l~~~~---~~~~~~~~~~~~~~--~----~~~l~i~  261 (813)
                      +..|..+.+.+|     ++|+|+|.....-...+.|||.  |+.+....   ..........++..  .    .-.|.|.
T Consensus         4 tQ~p~~v~~~~G-----~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~   78 (115)
T d1j8hd1           4 TQLGSHVSVSEG-----ALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKP   78 (115)
T ss_dssp             ECSCSEEEEETT-----SCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEES
T ss_pred             EcCCCeEEEcCC-----CCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeec
Confidence            444677787777     6699999987655668999984  22221110   00000011112222  1    1247787


Q ss_pred             CCccccCCeeEEEEeecC
Q psy14896        262 DPRQVEDRGSYHCKASNK  279 (813)
Q Consensus       262 ~~~~~~d~G~Y~C~a~n~  279 (813)
                      +. +.+|+|.|.|.+...
T Consensus        79 ~~-~~~Dsa~YyCa~~~~   95 (115)
T d1j8hd1          79 SA-HMSDAAEYFCAVSES   95 (115)
T ss_dssp             SC-CGGGCEEEEEEEESS
T ss_pred             cc-cccCCccceeeecCC
Confidence            75 899999999998753

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.41  E-value=0.00023  Score=57.08  Aligned_cols=71  Identities=13%  Similarity=0.113  Sum_probs=46.7

Q ss_pred             CCCceeecCCCeEEEecCCCCC-CcceEEEeec--cccc----------cccCCccEEEccC---ccEEEeeeeecCCee
Q psy14896        302 RAPEIGNQNWGKAMFCDPPTNY-PGVNYYWARD--YFPN----------FVEEDKRVFVSYD---GALYFSALEQIDAGN  365 (813)
Q Consensus       302 ~~~~~~~~~~~~~l~C~~~~~~-p~~~v~W~k~--~~~~----------~~~~~~~~~~~~~---~~L~i~~v~~~D~G~  365 (813)
                      +....+.+|+.++|.|....+. ....+.||+-  ++..          ......|+....+   .+|.|.+++++|+|.
T Consensus         7 p~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~   86 (111)
T d1rzfl1           7 PPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEAD   86 (111)
T ss_dssp             CSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSE
T ss_pred             CcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcc
Confidence            3346778899999999864433 3456999963  1110          0111233443333   279999999999999


Q ss_pred             eEEEEee
Q psy14896        366 YSCNVQS  372 (813)
Q Consensus       366 Y~C~a~n  372 (813)
                      |.|.+..
T Consensus        87 YyCA~~~   93 (111)
T d1rzfl1          87 YYCGTWD   93 (111)
T ss_dssp             EEEEEEE
T ss_pred             eEEeecC
Confidence            9998764

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.40  E-value=8.8e-05  Score=59.12  Aligned_cols=64  Identities=22%  Similarity=0.408  Sum_probs=44.9

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeC--CcccC-----C-------Ccee----eecceEEEECCCCCCCCEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRR--GSPLP-----R-------NAYF----ENFNRILTIPNVKVEDQGEYICRA  743 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~--g~~l~-----~-------~~~~----~~~~~~L~i~~v~~~d~G~Y~C~a  743 (813)
                      ..+.+|++|+|+|.........+.|||-  |+.+.     .       ..++    ......|.|.+++.+|+|.|.|.+
T Consensus         9 ~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~YyCA~   88 (108)
T d1nfde1           9 ASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYYCLS   88 (108)
T ss_dssp             EEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEEEEE
T ss_pred             eEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceEEEEe
Confidence            5678999999999887555557899983  32110     0       0111    122457999999999999999987


Q ss_pred             Ec
Q psy14896        744 SN  745 (813)
Q Consensus       744 ~N  745 (813)
                      ..
T Consensus        89 ~~   90 (108)
T d1nfde1          89 SY   90 (108)
T ss_dssp             EE
T ss_pred             ec
Confidence            63

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.40  E-value=0.00055  Score=54.06  Aligned_cols=80  Identities=20%  Similarity=0.368  Sum_probs=46.6

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeeccc--ccccccc--cccccCCCccEEee--C--CeEEEcCC
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDY--VQDRLVA--NLIDPLSDKRFTLS--G--GNLIINDP  263 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~--~l~~~~~--~~~~~~~~~~~~~~--~--~~l~i~~~  263 (813)
                      ++..|..+.+.+|     ++|+|.|..+. ....+.|||...  .......  .........++...  +  -+|.|.+.
T Consensus         3 vtQsP~~l~~~~G-----~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~   76 (104)
T d1yqvl1           3 LTQSPAIMSASPG-----EKVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSM   76 (104)
T ss_dssp             EEEESSEEEECTT-----CCEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             EeCcCCeEEECCC-----CCEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEeccc
Confidence            4455777777776     77999999754 345689998632  1110000  01111112222221  2  24777775


Q ss_pred             ccccCCeeEEEEeec
Q psy14896        264 RQVEDRGSYHCKASN  278 (813)
Q Consensus       264 ~~~~d~G~Y~C~a~n  278 (813)
                       +.+|+|.|.|.+..
T Consensus        77 -~~~Dsa~YyCa~~~   90 (104)
T d1yqvl1          77 -ETEDAATYYCQQWG   90 (104)
T ss_dssp             -CGGGCEEEEEEECS
T ss_pred             -CcccCCeEEEEecC
Confidence             99999999997653

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.39  E-value=0.0004  Score=55.77  Aligned_cols=78  Identities=24%  Similarity=0.347  Sum_probs=45.6

Q ss_pred             CCceeecCCCccccccEEEEeeeccC---CCCeEEEeecc--cccccccc--cccccCCCccEEee----CCeEEEcCCc
Q psy14896        196 PTDVVFDLSKRSILNDITLSCYAGGY---PNPSYEWFKED--YVQDRLVA--NLIDPLSDKRFTLS----GGNLIINDPR  264 (813)
Q Consensus       196 p~~~~v~~g~~~~g~~v~l~C~~~g~---P~p~v~W~k~g--~~l~~~~~--~~~~~~~~~~~~~~----~~~l~i~~~~  264 (813)
                      |..+.+.+|     ++|+|.|...+.   ....+.|||..  +.+.-...  .........++...    +.+|.|.+. 
T Consensus         7 P~s~~~~~G-----~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l-   80 (112)
T d1lgva1           7 PASVSGSPG-----QSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGL-   80 (112)
T ss_dssp             CSEEEECTT-----CCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSC-
T ss_pred             CCcEEECCC-----CCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcC-
Confidence            566777666     779999998653   23469999843  22211110  01111222233321    234677664 


Q ss_pred             cccCCeeEEEEeecC
Q psy14896        265 QVEDRGSYHCKASNK  279 (813)
Q Consensus       265 ~~~d~G~Y~C~a~n~  279 (813)
                      +.+|+|.|.|.+.+.
T Consensus        81 ~~~Dsa~YyCa~~~~   95 (112)
T d1lgva1          81 QAEDEADYYCSSYDG   95 (112)
T ss_dssp             CGGGCEEEEEEEECS
T ss_pred             ccccCEEEEEeeecC
Confidence            999999999988654

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.39  E-value=0.00068  Score=54.30  Aligned_cols=81  Identities=22%  Similarity=0.317  Sum_probs=47.9

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccC-----CCCeEEEeecc--ccccccccc--ccccCCCccEEee----CCeE
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGY-----PNPSYEWFKED--YVQDRLVAN--LIDPLSDKRFTLS----GGNL  258 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~-----P~p~v~W~k~g--~~l~~~~~~--~~~~~~~~~~~~~----~~~l  258 (813)
                      ++..|..+.+.+|     ++|+|.|..++.     ....+.|||..  +........  ........++...    +.+|
T Consensus         5 ltQ~P~s~~~~~G-----~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L   79 (113)
T d1n4xl_           5 MTQTPLYLPVSLG-----DQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTL   79 (113)
T ss_dssp             EEEECSEEEECTT-----CCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEE
T ss_pred             EeCcCCEEEECCC-----CCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccC
Confidence            4455777777776     779999998542     23579999853  222111100  0111222333322    2357


Q ss_pred             EEcCCccccCCeeEEEEeec
Q psy14896        259 IINDPRQVEDRGSYHCKASN  278 (813)
Q Consensus       259 ~i~~~~~~~d~G~Y~C~a~n  278 (813)
                      .|.+. +.+|+|.|.|...+
T Consensus        80 ~I~~~-~~~DsavYyCa~~~   98 (113)
T d1n4xl_          80 KISRV-EAEDLGIYYCFQGS   98 (113)
T ss_dssp             EESSC-CGGGCEEEEEEECS
T ss_pred             ccCCC-CcccCEEEEEEECC
Confidence            88775 89999999996553

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.39  E-value=0.00025  Score=57.16  Aligned_cols=80  Identities=23%  Similarity=0.328  Sum_probs=46.2

Q ss_pred             eeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeec--cccccccccc--ccccCCCccEEee-----CCeEEEcCC
Q psy14896        193 IKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKE--DYVQDRLVAN--LIDPLSDKRFTLS-----GGNLIINDP  263 (813)
Q Consensus       193 ~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~--g~~l~~~~~~--~~~~~~~~~~~~~-----~~~l~i~~~  263 (813)
                      +..|..+.+.+|     ++|+|.|..++ ....+.|||.  |..+......  ........+....     ..+|.|.+.
T Consensus         5 ~Q~P~~~~v~~G-----~~vtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   78 (113)
T d1h5ba_           5 EQSPSALSLHEG-----TDSALRCNFTT-TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDA   78 (113)
T ss_dssp             EEECSEEEEETT-----CCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSC
T ss_pred             EECCCEEEEcCC-----CCEEEEEEEec-CCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCC
Confidence            445677888777     67999999875 3457999994  3322111100  0000011111111     124677765


Q ss_pred             ccccCCeeEEEEeecC
Q psy14896        264 RQVEDRGSYHCKASNK  279 (813)
Q Consensus       264 ~~~~d~G~Y~C~a~n~  279 (813)
                       +.+|+|.|.|.+...
T Consensus        79 -~~~Dsa~YyCa~~~~   93 (113)
T d1h5ba_          79 -QLEDSGTYFCAAEAS   93 (113)
T ss_dssp             -CGGGCEEEEEEEECS
T ss_pred             -CHhHCEEEEEEecCC
Confidence             899999999988753

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.39  E-value=0.00078  Score=53.88  Aligned_cols=80  Identities=21%  Similarity=0.315  Sum_probs=46.0

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccC-----CCCeEEEeecc--ccccccccc--ccccCCCccEEee----CCeE
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGY-----PNPSYEWFKED--YVQDRLVAN--LIDPLSDKRFTLS----GGNL  258 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~-----P~p~v~W~k~g--~~l~~~~~~--~~~~~~~~~~~~~----~~~l  258 (813)
                      ++..|..+.+.+|     ++|+|.|.+++.     ....+.||+..  +........  ........++...    ...|
T Consensus         4 lTQ~p~slsv~~G-----~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L   78 (112)
T d1mjul1           4 MTQAAPSVPVTPG-----ESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTL   78 (112)
T ss_dssp             EECCCSEEEECTT-----SCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEE
T ss_pred             eEecCCEEEECCC-----CCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEE
Confidence            3445667777666     779999998652     24579999853  222111100  0111222233322    1246


Q ss_pred             EEcCCccccCCeeEEEEee
Q psy14896        259 IINDPRQVEDRGSYHCKAS  277 (813)
Q Consensus       259 ~i~~~~~~~d~G~Y~C~a~  277 (813)
                      .|.+. +.+|+|.|.|...
T Consensus        79 ~Is~~-~~~DsAvYyCa~~   96 (112)
T d1mjul1          79 RISRV-EAEDVGVYYCLQH   96 (112)
T ss_dssp             EESSC-CGGGCEEEEEEEC
T ss_pred             EECCc-cccCCceEEEEeC
Confidence            77775 8999999999543

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.38  E-value=0.00066  Score=55.22  Aligned_cols=80  Identities=20%  Similarity=0.262  Sum_probs=47.5

Q ss_pred             CCceeecCCCccccccEEEEeeecc---CC---CCeEEEeecccccccc-----cccccccCCCccEEee------CCeE
Q psy14896        196 PTDVVFDLSKRSILNDITLSCYAGG---YP---NPSYEWFKEDYVQDRL-----VANLIDPLSDKRFTLS------GGNL  258 (813)
Q Consensus       196 p~~~~v~~g~~~~g~~v~l~C~~~g---~P---~p~v~W~k~g~~l~~~-----~~~~~~~~~~~~~~~~------~~~l  258 (813)
                      |+++.+.+|     ++|.|.|....   .+   ...+.|++.+......     ...........++.+.      +.+|
T Consensus         7 P~~v~~~~G-----~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL   81 (118)
T d1qfoa_           7 PKNVQGLSG-----SCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNL   81 (118)
T ss_dssp             CSEEEEETT-----SCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCE
T ss_pred             CCEEEEecC-----CcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEE
Confidence            566777676     77999999742   11   2246788764322111     1111222334444442      3458


Q ss_pred             EEcCCccccCCeeEEEEeecCce
Q psy14896        259 IINDPRQVEDRGSYHCKASNKFG  281 (813)
Q Consensus       259 ~i~~~~~~~d~G~Y~C~a~n~~g  281 (813)
                      .|.+. +.+|+|.|.|.+....+
T Consensus        82 ~I~~v-~~~DsG~Y~C~v~~~~~  103 (118)
T d1qfoa_          82 LLKDL-KPEDSGTYNFRFEISDS  103 (118)
T ss_dssp             EECSC-CGGGCEEEEEEEECC-C
T ss_pred             EECCC-ChhHCEEEEEEEEeCCC
Confidence            88885 89999999999975443

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.37  E-value=0.00023  Score=57.45  Aligned_cols=81  Identities=20%  Similarity=0.383  Sum_probs=47.1

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecc--ccccccccc----ccccCCCccEEee----CCeEEEc
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKED--YVQDRLVAN----LIDPLSDKRFTLS----GGNLIIN  261 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g--~~l~~~~~~----~~~~~~~~~~~~~----~~~l~i~  261 (813)
                      ++..|..+.+.+|     ++|+|.|...+. ...+.|||..  +.+.-....    ........+....    ..+|.|.
T Consensus         3 l~Q~P~~~~~~~G-----~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~   76 (115)
T d1ogad1           3 LEQSPQFLSIQEG-----ENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHIT   76 (115)
T ss_dssp             CEEECSEEEEETT-----CCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEES
T ss_pred             eEeCCCeEEECCC-----CCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeec
Confidence            4455777877777     779999998763 4579999953  211100000    0001111111111    2247777


Q ss_pred             CCccccCCeeEEEEeecC
Q psy14896        262 DPRQVEDRGSYHCKASNK  279 (813)
Q Consensus       262 ~~~~~~d~G~Y~C~a~n~  279 (813)
                      +. +.+|+|.|.|.+...
T Consensus        77 ~~-~~~Dsa~YyCa~~~~   93 (115)
T d1ogad1          77 AA-QPGDTGLYLCAGAGS   93 (115)
T ss_dssp             SC-CGGGCEEEEEEEECT
T ss_pred             CC-CccceeeEcccccCC
Confidence            75 899999999987743

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.00077  Score=54.00  Aligned_cols=70  Identities=13%  Similarity=0.168  Sum_probs=39.2

Q ss_pred             ccccEEEEeeeccCC---CCeEEE--eecccccccc------cccccccCCCccEEee--CCeEEEcCCccccCCeeEEE
Q psy14896        208 ILNDITLSCYAGGYP---NPSYEW--FKEDYVQDRL------VANLIDPLSDKRFTLS--GGNLIINDPRQVEDRGSYHC  274 (813)
Q Consensus       208 ~g~~v~l~C~~~g~P---~p~v~W--~k~g~~l~~~------~~~~~~~~~~~~~~~~--~~~l~i~~~~~~~d~G~Y~C  274 (813)
                      .|++|+|.|..+..+   ...+.|  .+++......      .....++....+....  +.+|.|.+. +.+|+|.|.|
T Consensus         8 ~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v-~~~D~G~Y~C   86 (110)
T d1ncna_           8 FNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNL-QIKDKGLYQC   86 (110)
T ss_dssp             TTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSC-CGGGCEEEEE
T ss_pred             eCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCC-ChhHCEEEEE
Confidence            358899999986422   223444  4443322100      0001122233333333  457888885 9999999999


Q ss_pred             Eeec
Q psy14896        275 KASN  278 (813)
Q Consensus       275 ~a~n  278 (813)
                      .+..
T Consensus        87 ~V~~   90 (110)
T d1ncna_          87 IIHH   90 (110)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9863

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.36  E-value=0.00016  Score=58.13  Aligned_cols=64  Identities=22%  Similarity=0.341  Sum_probs=43.7

Q ss_pred             cCCCCCCeEEEEEEecCCC-----CCeEEEEeC--CcccC------------CCcee----eecceEEEECCCCCCCCEE
Q psy14896        682 EAPKAGDKVRLECVAFGYP-----VPSYNWTRR--GSPLP------------RNAYF----ENFNRILTIPNVKVEDQGE  738 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P-----~p~i~W~k~--g~~l~------------~~~~~----~~~~~~L~i~~v~~~d~G~  738 (813)
                      ..+.+|++|+|.|...+..     ...+.|||-  |+.+.            ...++    ......|+|.+++.+|+|.
T Consensus        12 ~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsav   91 (113)
T d1n4xl_          12 LPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGI   91 (113)
T ss_dssp             EEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCCGGGCEE
T ss_pred             EEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCCcccCEE
Confidence            5678999999999986432     246999983  32210            00111    1234579999999999999


Q ss_pred             EEEEEEc
Q psy14896        739 YICRASN  745 (813)
Q Consensus       739 Y~C~a~N  745 (813)
                      |.|.+.+
T Consensus        92 YyCa~~~   98 (113)
T d1n4xl_          92 YYCFQGS   98 (113)
T ss_dssp             EEEEECS
T ss_pred             EEEEECC
Confidence            9996543

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.00039  Score=53.99  Aligned_cols=77  Identities=19%  Similarity=0.195  Sum_probs=44.8

Q ss_pred             CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeC-CeEEEcCCcccc
Q psy14896        189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSG-GNLIINDPRQVE  267 (813)
Q Consensus       189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~-~~l~i~~~~~~~  267 (813)
                      +|.|...|..+ |..|     ++|+|.|.... ....+.+||+|.......     ........... ..+.|.+ ++.+
T Consensus         4 kPsLsa~P~~~-v~~G-----~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~-----~~~~~~~~~~~~a~F~l~~-v~~~   70 (98)
T d1ugna2           4 KPTLSAQPSPV-VNSG-----GNVTLQCDSQV-AFDGFILCKEGEDEHPQC-----LNSQPHARGSSRAIFSVGP-VSPS   70 (98)
T ss_dssp             CCEEEEESCSE-EETT-----CCEEEEEECSS-CCSEEEEEEC------CE-----EEC------CCEEEEEECC-CCTT
T ss_pred             CCEEEeeCCCc-cCCC-----CcEEEEeCCCC-CCCEEEEEECCCcCCcEe-----eeeEEcCCCceEEEEEeee-cccC
Confidence            57888888654 6666     56999999764 567999999986321000     00000000001 1355555 5899


Q ss_pred             CCeeEEEEeec
Q psy14896        268 DRGSYHCKASN  278 (813)
Q Consensus       268 d~G~Y~C~a~n  278 (813)
                      |+|.|+|....
T Consensus        71 ~~G~Y~C~y~~   81 (98)
T d1ugna2          71 RRWWYRCYAYD   81 (98)
T ss_dssp             SCEEEEEEEEC
T ss_pred             CCeEEEEeeEc
Confidence            99999998764

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=8.1e-05  Score=60.30  Aligned_cols=69  Identities=14%  Similarity=0.171  Sum_probs=44.0

Q ss_pred             ceeecCCCeEEEecCCC-CCCcceEEEeec--cccc-cc------------cCCccEEEcc---Cc--cEEEeeeeecCC
Q psy14896        305 EIGNQNWGKAMFCDPPT-NYPGVNYYWARD--YFPN-FV------------EEDKRVFVSY---DG--ALYFSALEQIDA  363 (813)
Q Consensus       305 ~~~~~~~~~~l~C~~~~-~~p~~~v~W~k~--~~~~-~~------------~~~~~~~~~~---~~--~L~i~~v~~~D~  363 (813)
                      ..+.+|+.++|.|.... ......+.|+|-  +... .+            ....|+.+..   .+  +|+|.+++.+|+
T Consensus         9 ~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~Ds   88 (113)
T d1smoa_           9 YELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDS   88 (113)
T ss_dssp             EECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCcccC
Confidence            45567999999998532 223457899973  2110 00            0112444432   22  599999999999


Q ss_pred             eeeEEEEeee
Q psy14896        364 GNYSCNVQSK  373 (813)
Q Consensus       364 G~Y~C~a~n~  373 (813)
                      |.|.|.+...
T Consensus        89 g~Y~Cav~~~   98 (113)
T d1smoa_          89 GLYQCVIYQP   98 (113)
T ss_dssp             EEEEEEECCT
T ss_pred             ceEEEEEECC
Confidence            9999988644

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.35  E-value=0.00016  Score=58.17  Aligned_cols=64  Identities=28%  Similarity=0.414  Sum_probs=43.5

Q ss_pred             cCCCCCCeEEEEEEecCCC------CCeEEEEeC--CcccC------------CCcee----eecceEEEECCCCCCCCE
Q psy14896        682 EAPKAGDKVRLECVAFGYP------VPSYNWTRR--GSPLP------------RNAYF----ENFNRILTIPNVKVEDQG  737 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P------~p~i~W~k~--g~~l~------------~~~~~----~~~~~~L~i~~v~~~d~G  737 (813)
                      ..+.+|++|+|.|.+.+.-      ...+.|||.  |..+.            ...++    ......|.|.+++.+|+|
T Consensus        11 v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l~~~Dsa   90 (113)
T d1q9ra1          11 LAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQAEDLA   90 (113)
T ss_dssp             EEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             EEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecccccCCCe
Confidence            5578999999999876431      235999984  33210            01111    222347999999999999


Q ss_pred             EEEEEEEc
Q psy14896        738 EYICRASN  745 (813)
Q Consensus       738 ~Y~C~a~N  745 (813)
                      .|.|.+.+
T Consensus        91 ~YyCA~~~   98 (113)
T d1q9ra1          91 VYYCKQSY   98 (113)
T ss_dssp             EEEEEECS
T ss_pred             EEEecccC
Confidence            99998753

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.00029  Score=57.79  Aligned_cols=71  Identities=18%  Similarity=0.144  Sum_probs=45.7

Q ss_pred             CceeecCCCeEEEecCC---CC---CCcceEEEeeccccc---------------cccCCccEEEccC-----ccEEEee
Q psy14896        304 PEIGNQNWGKAMFCDPP---TN---YPGVNYYWARDYFPN---------------FVEEDKRVFVSYD-----GALYFSA  357 (813)
Q Consensus       304 ~~~~~~~~~~~l~C~~~---~~---~p~~~v~W~k~~~~~---------------~~~~~~~~~~~~~-----~~L~i~~  357 (813)
                      ...+.+|+.++|.|...   .+   .....+.|++....-               ......|+.+..+     .+|.|.+
T Consensus        10 svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   89 (121)
T d2g5ra1          10 SVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSIRD   89 (121)
T ss_dssp             EEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEECS
T ss_pred             EEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEECC
Confidence            45677899999999742   11   122568898753220               0011235555432     2799999


Q ss_pred             eeecCCeeeEEEEeeec
Q psy14896        358 LEQIDAGNYSCNVQSKV  374 (813)
Q Consensus       358 v~~~D~G~Y~C~a~n~~  374 (813)
                      ++.+|+|.|.|.+....
T Consensus        90 v~~~DsG~Y~C~v~~~~  106 (121)
T d2g5ra1          90 ARMSDAGRYFFRMEKGN  106 (121)
T ss_dssp             CCGGGCEEEEEEEEETT
T ss_pred             CChHHCEEEEEEEEeCC
Confidence            99999999999997543

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.34  E-value=0.00028  Score=54.72  Aligned_cols=68  Identities=19%  Similarity=0.362  Sum_probs=41.5

Q ss_pred             cccEEEEeeeccC-C-CCeEEEeecccccccccc-cccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCce
Q psy14896        209 LNDITLSCYAGGY-P-NPSYEWFKEDYVQDRLVA-NLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFG  281 (813)
Q Consensus       209 g~~v~l~C~~~g~-P-~p~v~W~k~g~~l~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g  281 (813)
                      ++.++|.|.+.|+ | ...|+|++||+++..... .......+..|... ..|.+    ..++...|+|++.+...
T Consensus        17 ~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~-s~L~v----~~~~~~~ytC~V~H~sl   87 (98)
T d1hdmb1          17 REPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTL-SHLAL----TPSYGDTYTCVVEHIGA   87 (98)
T ss_dssp             SCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEE-EEEEE----CCCTTCCEEEEEECTTS
T ss_pred             CCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEE-EEeEc----CCCCCCEEEEEEEeCCC
Confidence            3679999999984 5 669999999987743321 11122223333321 12333    24456689999998643

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.34  E-value=0.0001  Score=59.36  Aligned_cols=64  Identities=23%  Similarity=0.444  Sum_probs=44.7

Q ss_pred             cCCCCCCeEEEEEEecCCCC--CeEEEEeC--CcccC------------CCcee------eecceEEEECCCCCCCCEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPV--PSYNWTRR--GSPLP------------RNAYF------ENFNRILTIPNVKVEDQGEY  739 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~--p~i~W~k~--g~~l~------------~~~~~------~~~~~~L~i~~v~~~d~G~Y  739 (813)
                      +.+.+|++|+|+|...+...  .-+.|||.  ++.+.            ..+++      ......|.|.+++.+|+|.|
T Consensus        10 ~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~Y   89 (111)
T d1cd0a_          10 VSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDEADY   89 (111)
T ss_dssp             EEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             eEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcccCcEE
Confidence            66889999999999876542  35999983  22210            00111      12245799999999999999


Q ss_pred             EEEEEc
Q psy14896        740 ICRASN  745 (813)
Q Consensus       740 ~C~a~N  745 (813)
                      .|.+.+
T Consensus        90 yCA~~~   95 (111)
T d1cd0a_          90 YCQSYD   95 (111)
T ss_dssp             EEEEEE
T ss_pred             EEeecc
Confidence            998754

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.33  E-value=0.0011  Score=47.08  Aligned_cols=80  Identities=18%  Similarity=0.225  Sum_probs=49.9

Q ss_pred             cccEEEEeeecc-CCCCeEEEeecccccccccccccccCCCccEEe-eCC--eEEE--cCCccccCCeeEEEEeecCcee
Q psy14896        209 LNDITLSCYAGG-YPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL-SGG--NLII--NDPRQVEDRGSYHCKASNKFGS  282 (813)
Q Consensus       209 g~~v~l~C~~~g-~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~-~~~--~l~i--~~~~~~~d~G~Y~C~a~n~~g~  282 (813)
                      |+.+.|+|.+.- .-.|.++|-|-++..=    ..++........- .++  ++.|  .+++..+|.|.|+|.|.-..+.
T Consensus        18 G~~f~leCPVkYC~~RPnVtWCKlngt~c----v~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~s~v   93 (104)
T d1xaua_          18 GELFKIECPVKYCVHRPNVTWCKHNGTIW----VPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQV   93 (104)
T ss_dssp             TSCEEEEEEEECSSSCCCEEEEEECSSSE----EECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETTEE
T ss_pred             CCceEecCcchhhcCCCCcEEEEeCCcEE----EEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCChhh
Confidence            477999999953 2467999998665321    0111112212221 122  2222  3556899999999999877777


Q ss_pred             eEeeeeEEee
Q psy14896        283 IISESVQLAF  292 (813)
Q Consensus       283 ~~s~~~~l~v  292 (813)
                      ..|-++++.|
T Consensus        94 ieSHSvti~V  103 (104)
T d1xaua_          94 INSHSVTIHV  103 (104)
T ss_dssp             EECCCEEEEE
T ss_pred             eecceEEEEe
Confidence            7677777765

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.32  E-value=0.00028  Score=54.65  Aligned_cols=62  Identities=18%  Similarity=0.304  Sum_probs=39.7

Q ss_pred             CCCeEEEecCCCCCCcceEEEeec--cccc---c------ccCCccEEEc--cC---ccEEEeeeeecCCeeeEEEEee
Q psy14896        310 NWGKAMFCDPPTNYPGVNYYWARD--YFPN---F------VEEDKRVFVS--YD---GALYFSALEQIDAGNYSCNVQS  372 (813)
Q Consensus       310 ~~~~~l~C~~~~~~p~~~v~W~k~--~~~~---~------~~~~~~~~~~--~~---~~L~i~~v~~~D~G~Y~C~a~n  372 (813)
                      |+.++|.|... +.....+.|||-  ++..   .      .....|+...  ..   .+|.|.+++++|+|.|.|.+..
T Consensus         1 G~~vtl~C~~~-~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~   78 (94)
T d2gj6d1           1 GAIASLNCTYS-DRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTT   78 (94)
T ss_dssp             TSCEEEEEEEC-CTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEES
T ss_pred             CccEEEEEEEc-cccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEec
Confidence            67889999853 345568999973  2110   0      0111222222  11   2699999999999999998764

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.32  E-value=0.00015  Score=58.79  Aligned_cols=80  Identities=26%  Similarity=0.410  Sum_probs=47.9

Q ss_pred             eeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecc--cccccccc--cccccCCCccEEee--C--CeEEEcCCc
Q psy14896        193 IKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKED--YVQDRLVA--NLIDPLSDKRFTLS--G--GNLIINDPR  264 (813)
Q Consensus       193 ~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g--~~l~~~~~--~~~~~~~~~~~~~~--~--~~l~i~~~~  264 (813)
                      +..|..+.+.+|     ++|+|.|...+.-...+.|||..  +.......  .........++...  +  .+|.|.+. 
T Consensus         5 tQ~P~sv~~~~G-----~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~-   78 (119)
T d1f3rb2           5 TQSPSLLSASVG-----DRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSL-   78 (119)
T ss_dssp             CEETSEECCCTT-----CCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSC-
T ss_pred             EccCCEEEECCC-----CCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccC-
Confidence            344666766666     77999999876555679999962  22211110  01111222333322  2  24777775 


Q ss_pred             cccCCeeEEEEeec
Q psy14896        265 QVEDRGSYHCKASN  278 (813)
Q Consensus       265 ~~~d~G~Y~C~a~n  278 (813)
                      +.+|+|.|.|.+.+
T Consensus        79 ~~~DsavYyCa~~~   92 (119)
T d1f3rb2          79 QPEDVATYFCYQYN   92 (119)
T ss_dssp             CGGGCSEEEEEEES
T ss_pred             ccCCCeEEEeeccC
Confidence            89999999997654

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.32  E-value=0.00014  Score=58.36  Aligned_cols=65  Identities=23%  Similarity=0.305  Sum_probs=45.3

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeC--CcccC------CC------cee------eecceEEEECCCCCCCCEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRR--GSPLP------RN------AYF------ENFNRILTIPNVKVEDQGEYIC  741 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~--g~~l~------~~------~~~------~~~~~~L~i~~v~~~d~G~Y~C  741 (813)
                      ..+.+|++|+|.|.....-...+.|||-  |+.+.      ..      .++      ......|+|.++..+|+|.|.|
T Consensus        10 ~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~Dsa~YyC   89 (110)
T d1ac6a_          10 VALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDSAVYYC   89 (110)
T ss_dssp             EEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGGCEEEEE
T ss_pred             EEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCCCcccce
Confidence            5678999999999877555567999983  33211      00      011      1123469999999999999999


Q ss_pred             EEEcC
Q psy14896        742 RASND  746 (813)
Q Consensus       742 ~a~N~  746 (813)
                      .+...
T Consensus        90 A~~~~   94 (110)
T d1ac6a_          90 ALSGG   94 (110)
T ss_dssp             EEEET
T ss_pred             eecCC
Confidence            88653

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.32  E-value=0.00062  Score=55.26  Aligned_cols=81  Identities=21%  Similarity=0.374  Sum_probs=48.1

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccCC--CCeEEEeec--cccccccc--ccccccCCCccEEee----C--CeEE
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYP--NPSYEWFKE--DYVQDRLV--ANLIDPLSDKRFTLS----G--GNLI  259 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P--~p~v~W~k~--g~~l~~~~--~~~~~~~~~~~~~~~----~--~~l~  259 (813)
                      ++.++..+.+.+|     ++++|+|.+++..  ...+.|||.  |+.+.-..  ..........++...    .  .+|.
T Consensus         4 vv~~~~sv~v~~G-----~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~   78 (120)
T d1hxma1           4 LVPEHQTVPVSIG-----VPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLK   78 (120)
T ss_dssp             EEESCSEEEEETT-----CCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEE
T ss_pred             EeccCCCEEECCC-----CCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecc
Confidence            3445666777666     7799999997643  356999984  33221111  011112222344322    1  2467


Q ss_pred             EcCCccccCCeeEEEEeec
Q psy14896        260 INDPRQVEDRGSYHCKASN  278 (813)
Q Consensus       260 i~~~~~~~d~G~Y~C~a~n  278 (813)
                      |.+. +.+|+|.|.|....
T Consensus        79 i~~~-~~~Dsa~YyCA~~~   96 (120)
T d1hxma1          79 ILAP-SERDEGSYYCACDT   96 (120)
T ss_dssp             ESSC-CGGGCEEEEEEEEC
T ss_pred             cccc-cccCCceeecCccc
Confidence            7665 99999999998654

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.32  E-value=0.00011  Score=53.74  Aligned_cols=54  Identities=26%  Similarity=0.594  Sum_probs=42.6

Q ss_pred             CCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCC-CCCEEEEEEEEc
Q psy14896        685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKV-EDQGEYICRASN  745 (813)
Q Consensus       685 ~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a~N  745 (813)
                      ..|.+|+|+|...+.  -.|+|.+|+..|+...     +..|.+.+.+. +|+|.|.|...+
T Consensus        12 ISGTtV~LTCP~~~~--~~I~Wkkn~~~i~g~~-----~~~L~L~~FSE~e~SGyY~C~~~~   66 (100)
T d1jbja2          12 ISGTSVELTCPLDSD--ENLKWEKNGQELPQKH-----DKHLVLQDFSEVEDSGYYVCYTPA   66 (100)
T ss_dssp             EETTEEEEECSSCCC--TTCEEEETTEEECSCC-----CSEEEEESCCTTTSCEEEEEECSS
T ss_pred             EeCCEEEEECCCCCC--CceEEeeccccCCCCC-----CcEEEEccccccccCcceEEecCC
Confidence            359999999997754  4699999999887543     44688888765 899999997544

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.00012  Score=56.45  Aligned_cols=58  Identities=19%  Similarity=0.493  Sum_probs=39.6

Q ss_pred             CCCeEEEEEEecCC-CCC-eEEEEeCCcccCCCce-----eeec------ceEEEECCCCCCCCEEEEEEEEcC
Q psy14896        686 AGDKVRLECVAFGY-PVP-SYNWTRRGSPLPRNAY-----FENF------NRILTIPNVKVEDQGEYICRASND  746 (813)
Q Consensus       686 ~G~~v~l~C~~~g~-P~p-~i~W~k~g~~l~~~~~-----~~~~------~~~L~i~~v~~~d~G~Y~C~a~N~  746 (813)
                      .++.++|.|.+.|+ |+. .|+|+|||+++..+..     ....      ...|.|   ..+|...|+|++.+.
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v---~~~~~~~ytC~V~H~   84 (94)
T d1de4a1          14 TSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAV---PPGEEQRYTCQVEHP   84 (94)
T ss_dssp             CSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEE---CTTCGGGEEEEEECT
T ss_pred             CCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEE---CCCCCCEEEEEEEeC
Confidence            35678999999985 644 9999999998754321     1111      123554   345666899999986

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.28  E-value=0.00011  Score=59.47  Aligned_cols=64  Identities=20%  Similarity=0.398  Sum_probs=44.9

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeC--CcccC------CCc------e--e----eecceEEEECCCCCCCCEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRR--GSPLP------RNA------Y--F----ENFNRILTIPNVKVEDQGEYIC  741 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~--g~~l~------~~~------~--~----~~~~~~L~i~~v~~~d~G~Y~C  741 (813)
                      ..+.+|++|+|.|...+.- ..+.|||-  |..+.      ...      +  .    ......|+|.+++.+|+|.|.|
T Consensus        10 ~~~~~G~svtl~C~~s~~~-~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   88 (115)
T d1ogad1          10 LSIQEGENLTVYCNSSSVF-SSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGLYLC   88 (115)
T ss_dssp             EEEETTCCEEEEEECSSCC-SCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCEEEEE
T ss_pred             EEECCCCCEEEEEEECCCC-ceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccceeeEcc
Confidence            5678999999999987643 47999983  22210      000      0  0    1224579999999999999999


Q ss_pred             EEEcC
Q psy14896        742 RASND  746 (813)
Q Consensus       742 ~a~N~  746 (813)
                      .+...
T Consensus        89 a~~~~   93 (115)
T d1ogad1          89 AGAGS   93 (115)
T ss_dssp             EEECT
T ss_pred             cccCC
Confidence            88744

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.26  E-value=0.00069  Score=54.52  Aligned_cols=78  Identities=18%  Similarity=0.265  Sum_probs=47.2

Q ss_pred             eCCCceeecCCCccccccEEEEeeeccCCCCeEEEee--cccccccccc-----cccccCCCccEEe-e----CCeEEEc
Q psy14896        194 KQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFK--EDYVQDRLVA-----NLIDPLSDKRFTL-S----GGNLIIN  261 (813)
Q Consensus       194 ~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k--~g~~l~~~~~-----~~~~~~~~~~~~~-~----~~~l~i~  261 (813)
                      ..|..+.+.+|     ++|+|.|...+ ....+.|||  .|+.......     .........++.. .    +.+|.|.
T Consensus         4 Q~P~~~~~~~G-----~svtl~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~   77 (113)
T d2ntsp1           4 QTPRYLIKTRG-----QQVTLSCSPIS-GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVS   77 (113)
T ss_dssp             EECSEEEEETT-----CCEEEEEECST-TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEEC
T ss_pred             eCCCeEEECCC-----CCEEEEEEECC-CCCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEEC
Confidence            34666777777     77999999755 345799999  3443321110     1111122222322 1    1257777


Q ss_pred             CCccccCCeeEEEEeec
Q psy14896        262 DPRQVEDRGSYHCKASN  278 (813)
Q Consensus       262 ~~~~~~d~G~Y~C~a~n  278 (813)
                      +. +.+|+|.|.|.+..
T Consensus        78 ~~-~~~Dsa~YyCA~~~   93 (113)
T d2ntsp1          78 TL-ELGDSALYLCASSL   93 (113)
T ss_dssp             SC-CGGGCEEEEEEEES
T ss_pred             CC-CcccceeeeeeeeC
Confidence            75 89999999998764

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.26  E-value=0.00017  Score=58.74  Aligned_cols=64  Identities=23%  Similarity=0.402  Sum_probs=45.0

Q ss_pred             cCCCCCCeEEEEEEecCCC--CCeEEEEeC--CcccC------------CCceee------ecceEEEECCCCCCCCEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYP--VPSYNWTRR--GSPLP------------RNAYFE------NFNRILTIPNVKVEDQGEY  739 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P--~p~i~W~k~--g~~l~------------~~~~~~------~~~~~L~i~~v~~~d~G~Y  739 (813)
                      ..+.+|++++|+|.+++..  ...+.|||.  |+.+.            ..+++.      .....|.|.+++.+|+|.|
T Consensus        11 v~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~~Dsa~Y   90 (120)
T d1hxma1          11 VPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERDEGSY   90 (120)
T ss_dssp             EEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGGCEEE
T ss_pred             EEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccccccCCcee
Confidence            5578999999999998654  357999983  33211            001111      1235799999999999999


Q ss_pred             EEEEEc
Q psy14896        740 ICRASN  745 (813)
Q Consensus       740 ~C~a~N  745 (813)
                      .|....
T Consensus        91 yCA~~~   96 (120)
T d1hxma1          91 YCACDT   96 (120)
T ss_dssp             EEEEEC
T ss_pred             ecCccc
Confidence            998754

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=97.25  E-value=0.00023  Score=55.40  Aligned_cols=63  Identities=16%  Similarity=0.247  Sum_probs=39.7

Q ss_pred             CCCCeEEEEEEecCCCC--CeEEEEeCCcccCCCcee----eecc---eEEEECCCCCCCCEEEEEEEEcCC
Q psy14896        685 KAGDKVRLECVAFGYPV--PSYNWTRRGSPLPRNAYF----ENFN---RILTIPNVKVEDQGEYICRASNDR  747 (813)
Q Consensus       685 ~~G~~v~l~C~~~g~P~--p~i~W~k~g~~l~~~~~~----~~~~---~~L~i~~v~~~d~G~Y~C~a~N~~  747 (813)
                      ..++..+|.|.+.|+-+  ..|+|++||..+..+...    ...+   +.+..-.+..++...|+|++.+..
T Consensus        16 ~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC~V~H~s   87 (98)
T d1d5mb1          16 PLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS   87 (98)
T ss_dssp             -----CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEEEEECTT
T ss_pred             ccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEEEEEECC
Confidence            34667789999998543  389999999988654321    1111   223333456778889999998863

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.25  E-value=0.00056  Score=54.81  Aligned_cols=80  Identities=21%  Similarity=0.267  Sum_probs=47.2

Q ss_pred             eeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeec--cccccccccc--ccccCCCccEEe--e----CCeEEEcC
Q psy14896        193 IKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKE--DYVQDRLVAN--LIDPLSDKRFTL--S----GGNLIIND  262 (813)
Q Consensus       193 ~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~--g~~l~~~~~~--~~~~~~~~~~~~--~----~~~l~i~~  262 (813)
                      ...|..+.+.+|     ++|+|.|...+.....+.|||.  |+...-....  .-......++..  .    ..+|.|.+
T Consensus         4 ~Q~p~s~~~~~G-----~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~   78 (111)
T d1bd2d1           4 KQNSPSLSVQEG-----RISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVP   78 (111)
T ss_dssp             ECCCSEEEEETT-----SCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESS
T ss_pred             EccCCEEEEcCC-----CCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECC
Confidence            334666777676     7799999987666667999985  3322111100  000001112221  1    22577777


Q ss_pred             CccccCCeeEEEEeec
Q psy14896        263 PRQVEDRGSYHCKASN  278 (813)
Q Consensus       263 ~~~~~d~G~Y~C~a~n  278 (813)
                      . +.+|+|.|.|.+..
T Consensus        79 ~-~~~Dsa~YyCa~~~   93 (111)
T d1bd2d1          79 S-QPGDSAVYFCAAME   93 (111)
T ss_dssp             C-CGGGCEEEEEEEES
T ss_pred             C-cccccEEEEeeccC
Confidence            5 89999999998763

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.25  E-value=0.00037  Score=49.63  Aligned_cols=67  Identities=21%  Similarity=0.454  Sum_probs=47.5

Q ss_pred             cCCCCCCeEEEEEEec-CCCCCeEEEEeCCc----ccCCCc--ee---e---ecceEEEECCCCCCCCEEEEEEEEcCCC
Q psy14896        682 EAPKAGDKVRLECVAF-GYPVPSYNWTRRGS----PLPRNA--YF---E---NFNRILTIPNVKVEDQGEYICRASNDRS  748 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~-g~P~p~i~W~k~g~----~l~~~~--~~---~---~~~~~L~i~~v~~~d~G~Y~C~a~N~~G  748 (813)
                      ..+..|+.+.|.|.+. -.-.|.++|-|-+.    +|....  +.   +   ..--.|.+..+...|.|.|+|.|.-..|
T Consensus        13 hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~s~   92 (104)
T d1xaua_          13 HSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQ   92 (104)
T ss_dssp             EEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETTE
T ss_pred             eeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCChh
Confidence            4578899999999997 44568999998433    333221  11   1   1123699999999999999999965444

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.24  E-value=0.00044  Score=53.33  Aligned_cols=68  Identities=13%  Similarity=0.014  Sum_probs=46.5

Q ss_pred             CceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCccEEEcc--CccEEEeeeeecCCeeeEEEEeee
Q psy14896        304 PEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSY--DGALYFSALEQIDAGNYSCNVQSK  373 (813)
Q Consensus       304 ~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~--~~~L~i~~v~~~D~G~Y~C~a~n~  373 (813)
                      ...+..|..++|.|..  ......+.++|+|...............  ...+.|.+++..|+|.|+|.....
T Consensus        10 ~~~V~~G~~VTl~C~~--~~~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   79 (96)
T d1nkra1          10 GPLVKSEETVILQCWS--DVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVT   79 (96)
T ss_dssp             CSEEETTCCEEEEEEE--SSCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             CCccCCCCcEEEEECC--CCCCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEEcC
Confidence            4567889999999994  3466789999998652111111111111  126999999999999999987543

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=97.24  E-value=0.00026  Score=54.74  Aligned_cols=66  Identities=20%  Similarity=0.392  Sum_probs=41.2

Q ss_pred             ccEEEEeeecc-CCCC-eEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCc
Q psy14896        210 NDITLSCYAGG-YPNP-SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKF  280 (813)
Q Consensus       210 ~~v~l~C~~~g-~P~p-~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~  280 (813)
                      +.++|.|.+.| .|.. .|+|++|+..+............+..|... ..|.+    ..+|...|+|++.+..
T Consensus        17 ~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~-S~L~v----~~~~~~~ytC~V~H~s   84 (96)
T d2h26a1          17 GRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLR-ATLDV----ADGEAAGLSCRVKHSS   84 (96)
T ss_dssp             TEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEE-EEEEE----EGGGCTTEEEEEEEGG
T ss_pred             CeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEE-EEEEE----eCccCCEEEEEEEeCC
Confidence            56999999987 5765 999999998764433222222333333221 12333    3456678999998754

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.22  E-value=5.1e-05  Score=59.06  Aligned_cols=73  Identities=16%  Similarity=0.324  Sum_probs=42.8

Q ss_pred             cccccEEEEeeeccCCCCeEEEeec--cccccccccc--ccccCCCccEEee------CCeEEEcCCccccCCeeEEEEe
Q psy14896        207 SILNDITLSCYAGGYPNPSYEWFKE--DYVQDRLVAN--LIDPLSDKRFTLS------GGNLIINDPRQVEDRGSYHCKA  276 (813)
Q Consensus       207 ~~g~~v~l~C~~~g~P~p~v~W~k~--g~~l~~~~~~--~~~~~~~~~~~~~------~~~l~i~~~~~~~d~G~Y~C~a  276 (813)
                      +||++|+|+|...+ ....+.|||.  |+.+......  .-......++...      ..+|.|.+. +.+|+|.|.|.+
T Consensus         6 ~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~-~~~Dsa~YyCA~   83 (96)
T d1ymmd1           6 QEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITAS-RAADTASYFCAT   83 (96)
T ss_dssp             SSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSC-CSTTCSCCEEEE
T ss_pred             CCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCC-CcccCEEEeEeE
Confidence            34588999999865 4458999983  3332211100  0011122233221      124777775 899999999988


Q ss_pred             ecCce
Q psy14896        277 SNKFG  281 (813)
Q Consensus       277 ~n~~g  281 (813)
                      ....|
T Consensus        84 ~~~~g   88 (96)
T d1ymmd1          84 DTTSG   88 (96)
T ss_dssp             EETTS
T ss_pred             ecCCC
Confidence            75544

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.22  E-value=0.00034  Score=56.84  Aligned_cols=64  Identities=16%  Similarity=0.184  Sum_probs=42.9

Q ss_pred             cCCCCCCeEEEEEEecCCCCC---eEEEEeC--CcccC-------CC-------c-----eeeecceEEEECCCCCCCCE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVP---SYNWTRR--GSPLP-------RN-------A-----YFENFNRILTIPNVKVEDQG  737 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p---~i~W~k~--g~~l~-------~~-------~-----~~~~~~~~L~i~~v~~~d~G  737 (813)
                      ..+.+|++|+|.|.....-.+   .+.|||.  |+.+.       ..       .     ........|+|.+++.+|+|
T Consensus         9 ~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   88 (117)
T d1dqta_           9 VLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAVDTG   88 (117)
T ss_dssp             EECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             EEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccccCE
Confidence            456889999999998633222   4889983  32110       00       0     01122457999999999999


Q ss_pred             EEEEEEEc
Q psy14896        738 EYICRASN  745 (813)
Q Consensus       738 ~Y~C~a~N  745 (813)
                      .|.|.+..
T Consensus        89 ~YyCa~~~   96 (117)
T d1dqta_          89 LYLCKVEL   96 (117)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEec
Confidence            99998753

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.22  E-value=0.00058  Score=54.83  Aligned_cols=68  Identities=22%  Similarity=0.419  Sum_probs=44.0

Q ss_pred             CCceeecCCCeEEEecCCCCCCcceEEEeec--cc-ccc-------------ccCCccEEEcc-C---ccEEEeeeeecC
Q psy14896        303 APEIGNQNWGKAMFCDPPTNYPGVNYYWARD--YF-PNF-------------VEEDKRVFVSY-D---GALYFSALEQID  362 (813)
Q Consensus       303 ~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~--~~-~~~-------------~~~~~~~~~~~-~---~~L~i~~v~~~D  362 (813)
                      ....+.+|+.++|.|....+  ...+.|||-  ++ +..             .....++.... +   .+|.|.+++++|
T Consensus         7 ~~~~~~~G~svtl~C~~~~~--~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   84 (112)
T d1kgce1           7 RYKVAKRGQDVALRCDPISG--HVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQED   84 (112)
T ss_dssp             SEEEEETTCCEEEEEECCTT--CCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCGGG
T ss_pred             CeEEECCCCCEEEEEEECCC--CCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCcCC
Confidence            34567889999999985443  457999972  22 100             01122333222 1   269999999999


Q ss_pred             CeeeEEEEee
Q psy14896        363 AGNYSCNVQS  372 (813)
Q Consensus       363 ~G~Y~C~a~n  372 (813)
                      +|.|.|.+..
T Consensus        85 sa~YyCa~~~   94 (112)
T d1kgce1          85 SAVYLCASSL   94 (112)
T ss_dssp             CEEEEEEEES
T ss_pred             CEEEEEeeeC
Confidence            9999998753

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.21  E-value=0.00025  Score=57.23  Aligned_cols=64  Identities=22%  Similarity=0.426  Sum_probs=44.4

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEe--CCcccC-------CC--------cee-----eecceEEEECCCCCCCCEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTR--RGSPLP-------RN--------AYF-----ENFNRILTIPNVKVEDQGEY  739 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k--~g~~l~-------~~--------~~~-----~~~~~~L~i~~v~~~d~G~Y  739 (813)
                      ..+.+|++|+|.|...+. ...+.|||  .|+.+.       ..        .++     ......|+|.+++.+|+|.|
T Consensus         9 ~~~~~G~svtl~C~~~~~-~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   87 (113)
T d2ntsp1           9 LIKTRGQQVTLSCSPISG-HRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGDSALY   87 (113)
T ss_dssp             EEEETTCCEEEEEECSTT-CCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGCEEE
T ss_pred             EEECCCCCEEEEEEECCC-CCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCcccceee
Confidence            456899999999997653 35799998  343221       00        011     11234799999999999999


Q ss_pred             EEEEEcC
Q psy14896        740 ICRASND  746 (813)
Q Consensus       740 ~C~a~N~  746 (813)
                      .|.+...
T Consensus        88 yCA~~~~   94 (113)
T d2ntsp1          88 LCASSLA   94 (113)
T ss_dssp             EEEEESS
T ss_pred             eeeeeCC
Confidence            9988643

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.21  E-value=0.00025  Score=57.46  Aligned_cols=72  Identities=14%  Similarity=0.133  Sum_probs=46.1

Q ss_pred             CCceeccCCCceEEeCCCCCCCccEEEEccCC--CC-Cc----------ccCCCeEEEee--C---ccEEEEeecccCCe
Q psy14896        576 APEIGNQNWGKAMFCDPPTNYPGVNYYWARDY--FP-NF----------VEEDKRVFVSY--D---GALYFSALEQIDAG  637 (813)
Q Consensus       576 ~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~--~~-~~----------~~~~~~~~~~~--~---~~L~i~~~~~~d~G  637 (813)
                      ....+.+|+.++|.|..........+.|||..  .. ..          .....++....  .   .+|.|.++..+|+|
T Consensus         7 ~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa   86 (115)
T d1fo0a_           7 TSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDSA   86 (115)
T ss_dssp             CEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGGGCE
T ss_pred             CEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCccccc
Confidence            34457889999999986444555678999832  11 00          00112233322  1   24999999999999


Q ss_pred             eEEEEEEeee
Q psy14896        638 NYSCNVQSKV  647 (813)
Q Consensus       638 ~Y~C~a~n~~  647 (813)
                      .|.|.+....
T Consensus        87 ~YyCa~~~~~   96 (115)
T d1fo0a_          87 VYFCAMRGDY   96 (115)
T ss_dssp             EEEEEEECCC
T ss_pred             cccceeecCC
Confidence            9999986443

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.20  E-value=0.00038  Score=55.27  Aligned_cols=69  Identities=19%  Similarity=0.186  Sum_probs=45.0

Q ss_pred             CceeecCCCeEEEecCCCCCCcceEEEeec--ccccc----------ccCCccEEEccCc---cEEEeeeeecCCeeeEE
Q psy14896        304 PEIGNQNWGKAMFCDPPTNYPGVNYYWARD--YFPNF----------VEEDKRVFVSYDG---ALYFSALEQIDAGNYSC  368 (813)
Q Consensus       304 ~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~--~~~~~----------~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C  368 (813)
                      ...+.+|+.++|.|... ......+.|||-  |+...          .....+.....++   +|.|.+++.+|+|.|.|
T Consensus         9 sl~~~~G~svtl~C~~~-~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYyC   87 (109)
T d1w72l1           9 SVSVAPGQTARITCGGN-NIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADYYC   87 (109)
T ss_dssp             EEEECTTSCEEEEEECT-TGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             eEEECCCCCEEEEEEcC-CCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEEEE
Confidence            45677899999999853 334457999963  22110          0112233332222   69999999999999999


Q ss_pred             EEeee
Q psy14896        369 NVQSK  373 (813)
Q Consensus       369 ~a~n~  373 (813)
                      .+...
T Consensus        88 A~~~~   92 (109)
T d1w72l1          88 QVWDS   92 (109)
T ss_dssp             EEEET
T ss_pred             EecCC
Confidence            87643

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.20  E-value=0.00048  Score=55.19  Aligned_cols=63  Identities=27%  Similarity=0.517  Sum_probs=43.6

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeC--CcccC------C----------Cceee-----ecceEEEECCCCCCCCEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRR--GSPLP------R----------NAYFE-----NFNRILTIPNVKVEDQGE  738 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~--g~~l~------~----------~~~~~-----~~~~~L~i~~v~~~d~G~  738 (813)
                      ..+.+|++|+|+|...+. ...+.|||-  |+.+.      .          ..++.     .....|+|.+++.+|+|.
T Consensus         9 ~~~~~G~svtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~Dsa~   87 (111)
T d2esve1           9 SVIEKGQTVTLRCDPISG-HDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAELEDSGV   87 (111)
T ss_dssp             EEEETTCCEEEEEECCTT-CSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCGGGCEE
T ss_pred             EEECCCCCEEEEEEECCC-CceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcccCCCce
Confidence            457899999999986643 358999973  32211      0          01111     123579999999999999


Q ss_pred             EEEEEEc
Q psy14896        739 YICRASN  745 (813)
Q Consensus       739 Y~C~a~N  745 (813)
                      |.|.+..
T Consensus        88 YyCa~~~   94 (111)
T d2esve1          88 YFCASSQ   94 (111)
T ss_dssp             EEEEEES
T ss_pred             EEEeeeC
Confidence            9998764

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=97.20  E-value=0.00046  Score=53.83  Aligned_cols=67  Identities=16%  Similarity=0.257  Sum_probs=40.6

Q ss_pred             cccEEEEeeeccC-C-CCeEEEeecccccccccc-cccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCc
Q psy14896        209 LNDITLSCYAGGY-P-NPSYEWFKEDYVQDRLVA-NLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKF  280 (813)
Q Consensus       209 g~~v~l~C~~~g~-P-~p~v~W~k~g~~l~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~  280 (813)
                      |+.++|.|.+.|+ | ...|+|++||+++..... .......+..|... ..|.+.    ..+...|+|++.+..
T Consensus        19 ~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~-S~L~v~----~~~~~~ytC~V~H~s   88 (101)
T d1fnga1          19 GEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKF-HYLTFL----PSTDDFYDCEVDHWG   88 (101)
T ss_dssp             TSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEE-EEEEEC----CCTTCCEEEEEECTT
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEE-EEeEEc----CCCCCEEEEEEEECC
Confidence            3668999999884 6 459999999988754321 11122233333322 133332    244568999999763

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.20  E-value=0.0006  Score=55.52  Aligned_cols=86  Identities=16%  Similarity=0.089  Sum_probs=51.4

Q ss_pred             CCceeecCCCeEEEecCC--CCC---CcceEEEeeccccc-------------cccCCccEEEcc-----CccEEEeeee
Q psy14896        303 APEIGNQNWGKAMFCDPP--TNY---PGVNYYWARDYFPN-------------FVEEDKRVFVSY-----DGALYFSALE  359 (813)
Q Consensus       303 ~~~~~~~~~~~~l~C~~~--~~~---p~~~v~W~k~~~~~-------------~~~~~~~~~~~~-----~~~L~i~~v~  359 (813)
                      ....+.+|+.++|.|...  ...   ....+.|++.....             ......|..+..     +.+|.|.+++
T Consensus         8 ~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~   87 (118)
T d1qfoa_           8 KNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDLK   87 (118)
T ss_dssp             SEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECSCC
T ss_pred             CEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECCCC
Confidence            345678899999999742  111   22456677643210             111234555543     2369999999


Q ss_pred             ecCCeeeEEEEeeeccccCCCCCceeeEE
Q psy14896        360 QIDAGNYSCNVQSKVSDTGRNGPFFPLKV  388 (813)
Q Consensus       360 ~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v  388 (813)
                      .+|+|.|.|++....+..-.....+.|+|
T Consensus        88 ~~DsG~Y~C~v~~~~~~~~~~~~~~~ltV  116 (118)
T d1qfoa_          88 PEDSGTYNFRFEISDSNRWLDVKGTTVTV  116 (118)
T ss_dssp             GGGCEEEEEEEECC-CCEEECSSCEEEEE
T ss_pred             hhHCEEEEEEEEeCCCCeEEcCCCEEEEE
Confidence            99999999999765433222334455655

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00026  Score=55.76  Aligned_cols=70  Identities=16%  Similarity=0.301  Sum_probs=40.6

Q ss_pred             ccEEEEeeeccC-CC-CeEEEeeccccccccccc-ccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCce
Q psy14896        210 NDITLSCYAGGY-PN-PSYEWFKEDYVQDRLVAN-LIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFG  281 (813)
Q Consensus       210 ~~v~l~C~~~g~-P~-p~v~W~k~g~~l~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g  281 (813)
                      +.++|.|.+.|. |. ..|+|++||+++...... ......+..|.. ...|.|... .-+....|+|+|.+...
T Consensus        21 ~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~-~S~L~v~~~-~w~~~~~ytC~V~H~~~   93 (102)
T d1q0xl2          21 AKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMA-SSYLTLTAR-AWERHSSYSCQVTHEGH   93 (102)
T ss_dssp             TEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEE-EEEEEEEHH-HHTTCCEEEEEEEETTE
T ss_pred             CeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEE-EEEEEECHH-HhCCCCEEEEEEEECCc
Confidence            458999999874 54 589999999876432211 111122233322 123444321 22446789999997643

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.19  E-value=0.00067  Score=54.42  Aligned_cols=70  Identities=16%  Similarity=0.097  Sum_probs=46.1

Q ss_pred             CCceeecCCCeEEEecCCCCCCcceEEEeec--ccccc----------ccCCccEEEccCc---cEEEeeeeecCCeeeE
Q psy14896        303 APEIGNQNWGKAMFCDPPTNYPGVNYYWARD--YFPNF----------VEEDKRVFVSYDG---ALYFSALEQIDAGNYS  367 (813)
Q Consensus       303 ~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~--~~~~~----------~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~  367 (813)
                      ....+.+|+.++|.|..........+.|||-  |+.+.          .....+..+..+.   .|.|.++..+|+|.|.
T Consensus         6 ~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~Yy   85 (112)
T d1kgcd1           6 NSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAVYY   85 (112)
T ss_dssp             SEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEEEE
T ss_pred             CEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccceeEe
Confidence            3456778999999998533333456899973  22211          1112334444433   5999999999999999


Q ss_pred             EEEee
Q psy14896        368 CNVQS  372 (813)
Q Consensus       368 C~a~n  372 (813)
                      |.+..
T Consensus        86 Ca~~~   90 (112)
T d1kgcd1          86 CILPL   90 (112)
T ss_dssp             EECCC
T ss_pred             eeEec
Confidence            97754

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.19  E-value=0.00067  Score=53.02  Aligned_cols=67  Identities=13%  Similarity=0.314  Sum_probs=40.0

Q ss_pred             cccEEEEeeecc-CCC-CeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCc
Q psy14896        209 LNDITLSCYAGG-YPN-PSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKF  280 (813)
Q Consensus       209 g~~v~l~C~~~g-~P~-p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~  280 (813)
                      |+..+|.|.+.| .|. ..|+|.+||..+............+..|... ..|.+    ..+|...|+|++.+..
T Consensus        18 ~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~-S~L~v----~~~~~~~ytC~V~H~~   86 (103)
T d1hdma1          18 GKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAF-SYLNF----TPEPSDIFSCIVTHEP   86 (103)
T ss_dssp             TSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEE-EEEEE----CCCTTCCEEEEEEETT
T ss_pred             CCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEE-EEEEE----ecCCCCEEEEEEEeCC
Confidence            466899999998 464 5999999998764322222222222222221 12333    2345567999999763

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.00018  Score=56.87  Aligned_cols=71  Identities=15%  Similarity=0.312  Sum_probs=40.8

Q ss_pred             ccEEEEeeecc-CCCC-eEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCcee
Q psy14896        210 NDITLSCYAGG-YPNP-SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGS  282 (813)
Q Consensus       210 ~~v~l~C~~~g-~P~p-~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~  282 (813)
                      .+++|.|.+.| .|.. .|+|++||.++............+..|.. ...|.|... .-.....|+|+|.+....
T Consensus        22 ~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~-~S~L~v~~~-~w~~~~~ytC~V~H~~~t   94 (104)
T d1o0va1          22 PTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELAST-QSELTLSQK-HWLSDRTYTCQVTYQGHT   94 (104)
T ss_dssp             SEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEE-EEEEEEEHH-HHHTTCCEEEEEEETTEE
T ss_pred             CeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEE-EEEEEECHH-HcCCCCEEEEEEEECCEe
Confidence            56999999988 5655 89999999887533221111111222211 122444321 222356799999987543

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.18  E-value=0.00024  Score=57.40  Aligned_cols=64  Identities=25%  Similarity=0.365  Sum_probs=44.0

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeC--CcccC-------CCc---------ee----eecceEEEECCCCCCCCEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRR--GSPLP-------RNA---------YF----ENFNRILTIPNVKVEDQGEY  739 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~--g~~l~-------~~~---------~~----~~~~~~L~i~~v~~~d~G~Y  739 (813)
                      ..+.+|++|+|+|.... ....+.|||-  |+.+.       .+.         ..    ......|+|.+++.+|+|.|
T Consensus         9 ~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DSa~Y   87 (114)
T d1ogae1           9 LFRKEGQNVTLSCEQNL-NHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPTAFY   87 (114)
T ss_dssp             EEEETTCCEEECCEECS-CCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCCEEE
T ss_pred             EEEcCCCCEEEEEEEec-CCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcCCceeE
Confidence            56789999999999863 3458999983  22110       000         00    11234699999999999999


Q ss_pred             EEEEEcC
Q psy14896        740 ICRASND  746 (813)
Q Consensus       740 ~C~a~N~  746 (813)
                      .|.+...
T Consensus        88 yCa~~~~   94 (114)
T d1ogae1          88 LCASSSR   94 (114)
T ss_dssp             EEEEESS
T ss_pred             EEeeccC
Confidence            9977643

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.0002  Score=56.71  Aligned_cols=64  Identities=25%  Similarity=0.447  Sum_probs=45.3

Q ss_pred             CCCCeEEEEEEecCC-CC-CeEEEEeCCcccCCCcee-----e------ecceEEEECCCCCCCCEEEEEEEEcCCC
Q psy14896        685 KAGDKVRLECVAFGY-PV-PSYNWTRRGSPLPRNAYF-----E------NFNRILTIPNVKVEDQGEYICRASNDRS  748 (813)
Q Consensus       685 ~~G~~v~l~C~~~g~-P~-p~i~W~k~g~~l~~~~~~-----~------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G  748 (813)
                      ..++.++|.|.+.|+ |. ..|+|++||..+..+...     .      ...+.|+|..-.......|+|++.+...
T Consensus        17 ~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l   93 (105)
T d1fp5a2          17 GSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAA   93 (105)
T ss_dssp             SSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTTS
T ss_pred             hcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECCC
Confidence            346789999999974 53 599999999987654311     1      1134577866666666789999998644

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00029  Score=50.85  Aligned_cols=73  Identities=15%  Similarity=0.326  Sum_probs=50.0

Q ss_pred             CCCCeEEEEEEecCCCCCeEEEEeCCcccCCCc---eeeecceEEEECCCCC-CCCEEEEEEEEcC-CCceEEEEEEEEE
Q psy14896        685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA---YFENFNRILTIPNVKV-EDQGEYICRASND-RSALESSVTISIQ  759 (813)
Q Consensus       685 ~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~---~~~~~~~~L~i~~v~~-~d~G~Y~C~a~N~-~G~~~~~~~l~V~  759 (813)
                      ..|.+|+|+|.-.  +...|+|.|++..+....   ........|.+.+.+. +++|.|.|.+... .......+.|.+.
T Consensus         8 ISGTtV~LTCP~~--~~~~i~W~~n~~~~~~~~~~~~~~~~~~~l~L~dfSe~e~sGyY~C~~~~~~~~~~~~~LYLKAR   85 (91)
T d1xiwa_           8 ISGTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRAR   85 (91)
T ss_dssp             EETTEEEEECSSC--TTSCEEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGGGCCEEEEEEEC
T ss_pred             EeCCEEEEECCCC--CCCceeeeeccccccCCCcccccccccceEEecccCccccCceEEEEcCCCCCCCcceEEEEEeE
Confidence            3589999999743  346899999998776432   1223345789999886 8999999999542 2233445555543

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.15  E-value=0.00034  Score=54.23  Aligned_cols=61  Identities=18%  Similarity=0.355  Sum_probs=42.1

Q ss_pred             CCCCCeEEEEEEecCC-C-CCeEEEEeCCcccCCCcee----eec------ceEEEECCCCCCCCEEEEEEEEcCC
Q psy14896        684 PKAGDKVRLECVAFGY-P-VPSYNWTRRGSPLPRNAYF----ENF------NRILTIPNVKVEDQGEYICRASNDR  747 (813)
Q Consensus       684 ~~~G~~v~l~C~~~g~-P-~p~i~W~k~g~~l~~~~~~----~~~------~~~L~i~~v~~~d~G~Y~C~a~N~~  747 (813)
                      ...++.++|.|.|.|+ | ...|+|++||+.+..+...    ...      .+.|.|.   .++...|+|.+.+..
T Consensus        14 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~---~~~~~~ytC~V~H~s   86 (98)
T d1hdmb1          14 FNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALT---PSYGDTYTCVVEHIG   86 (98)
T ss_dssp             CSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEEC---CCTTCCEEEEEECTT
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcC---CCCCCEEEEEEEeCC
Confidence            3557889999999987 4 4599999999988644211    111      2235553   455568999999864

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.15  E-value=0.00027  Score=57.39  Aligned_cols=64  Identities=22%  Similarity=0.374  Sum_probs=43.2

Q ss_pred             cCCCCCCeEEEEEEecCCC--CCeEEEEeC--CcccC-------CC---------ceee------ecceEEEECCCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYP--VPSYNWTRR--GSPLP-------RN---------AYFE------NFNRILTIPNVKVED  735 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P--~p~i~W~k~--g~~l~-------~~---------~~~~------~~~~~L~i~~v~~~d  735 (813)
                      +...+|++|+|.|.+.+..  ...+.|||-  |+.+.       .+         .++.      .....|+|.+++.+|
T Consensus        11 v~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l~~~D   90 (120)
T d1ypzf1          11 ISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEED   90 (120)
T ss_dssp             EEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCGGG
T ss_pred             EEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeecccccccccccccccccccccccccccc
Confidence            4556899999999987643  356999983  32210       00         0111      112469999999999


Q ss_pred             CEEEEEEEEc
Q psy14896        736 QGEYICRASN  745 (813)
Q Consensus       736 ~G~Y~C~a~N  745 (813)
                      +|.|.|.+.-
T Consensus        91 sa~YyCA~~~  100 (120)
T d1ypzf1          91 EAIYYCSYGE  100 (120)
T ss_dssp             CSEEEEEECC
T ss_pred             ceeEEEEEcC
Confidence            9999997753

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.00027  Score=55.88  Aligned_cols=63  Identities=16%  Similarity=0.315  Sum_probs=45.0

Q ss_pred             CCCCeEEEEEEecC-CCCC-eEEEEeCCcccCCCcee----ee-----cceEEEECCCCCCCCEEEEEEEEcCC
Q psy14896        685 KAGDKVRLECVAFG-YPVP-SYNWTRRGSPLPRNAYF----EN-----FNRILTIPNVKVEDQGEYICRASNDR  747 (813)
Q Consensus       685 ~~G~~v~l~C~~~g-~P~p-~i~W~k~g~~l~~~~~~----~~-----~~~~L~i~~v~~~d~G~Y~C~a~N~~  747 (813)
                      ..+.+++|.|.+.| .|.. .|+|++||..+..+...    ..     ..+.|.|..-.......|+|+|.+..
T Consensus        19 ~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~   92 (104)
T d1o0va1          19 HFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQG   92 (104)
T ss_dssp             CCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETT
T ss_pred             CCCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECC
Confidence            45678999999998 5544 79999999988654321    11     13457776655555678999999874

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.14  E-value=0.00061  Score=54.67  Aligned_cols=63  Identities=22%  Similarity=0.354  Sum_probs=43.3

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeC--CcccC------C----------Ccee----eecceEEEECCCCCCCCEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRR--GSPLP------R----------NAYF----ENFNRILTIPNVKVEDQGEY  739 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~--g~~l~------~----------~~~~----~~~~~~L~i~~v~~~d~G~Y  739 (813)
                      ..+.+|++++|+|..+.. ...+.|||-  |+.+.      .          ....    ......|.|.++..+|+|.|
T Consensus         9 ~~~~~G~svtl~C~~s~~-~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsavY   87 (112)
T d2bnub1           9 QVLKTGQSMTLQCAQDMN-HEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQTSVY   87 (112)
T ss_dssp             EEEETTCCEEEEEEESSC-CSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGGGCEEE
T ss_pred             EEECCCCCEEEEEEEECC-ccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHHHCEEE
Confidence            457889999999988743 457999983  32210      0          0001    11134699999999999999


Q ss_pred             EEEEEc
Q psy14896        740 ICRASN  745 (813)
Q Consensus       740 ~C~a~N  745 (813)
                      .|.+..
T Consensus        88 yCA~~~   93 (112)
T d2bnub1          88 FCASSY   93 (112)
T ss_dssp             EEEEEC
T ss_pred             EEeecC
Confidence            998764

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.13  E-value=0.0005  Score=55.34  Aligned_cols=64  Identities=25%  Similarity=0.388  Sum_probs=43.5

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeC--CcccC-------C---------Ccee----eecceEEEECCCCCCCCEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRR--GSPLP-------R---------NAYF----ENFNRILTIPNVKVEDQGEY  739 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~--g~~l~-------~---------~~~~----~~~~~~L~i~~v~~~d~G~Y  739 (813)
                      ..+.+|++|+|+|..... ...+.|||-  |..+.       .         ..+.    ......|+|.+++.+|+|.|
T Consensus        10 ~~~~~G~~v~l~C~~~~~-~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~Y   88 (113)
T d1j8he1          10 LVKRTGEKVFLECVQDMD-HENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESASTNQTSMY   88 (113)
T ss_dssp             EEEETTCCEEECEEESSC-CSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCGGGCEEE
T ss_pred             EEECCCCCEEEEEEEcCC-ccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCccCCcccE
Confidence            456899999999987533 357999983  32210       0         0000    11234699999999999999


Q ss_pred             EEEEEcC
Q psy14896        740 ICRASND  746 (813)
Q Consensus       740 ~C~a~N~  746 (813)
                      .|.+...
T Consensus        89 yCa~~~~   95 (113)
T d1j8he1          89 LCASSST   95 (113)
T ss_dssp             EEEEECT
T ss_pred             EeeEccC
Confidence            9988643

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.00061  Score=55.34  Aligned_cols=64  Identities=16%  Similarity=0.148  Sum_probs=43.5

Q ss_pred             cCCCCCCeEEEEEEecCCCCC---eEEEEeCC--cccC--------C------Cc-----eeeecceEEEECCCCCCCCE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVP---SYNWTRRG--SPLP--------R------NA-----YFENFNRILTIPNVKVEDQG  737 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p---~i~W~k~g--~~l~--------~------~~-----~~~~~~~~L~i~~v~~~d~G  737 (813)
                      ..+.+|+.|+|.|.....-.+   .+.|||..  +.+.        .      .+     ........|+|.+++.+|+|
T Consensus         9 ~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   88 (118)
T d1i8lc_           9 VLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTG   88 (118)
T ss_dssp             EECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGGGCE
T ss_pred             EEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccCCCE
Confidence            457899999999998643222   58999842  2110        0      00     11222457999999999999


Q ss_pred             EEEEEEEc
Q psy14896        738 EYICRASN  745 (813)
Q Consensus       738 ~Y~C~a~N  745 (813)
                      .|.|.+..
T Consensus        89 ~YyCa~~~   96 (118)
T d1i8lc_          89 LYICKVEL   96 (118)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEeEec
Confidence            99998764

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.00021  Score=54.94  Aligned_cols=64  Identities=23%  Similarity=0.400  Sum_probs=43.3

Q ss_pred             CCCeEEEecCCCCCCc-ceEEEeecccccccc--CCccEEEccCccE---EEeeeeecCCeeeEEEEeee
Q psy14896        310 NWGKAMFCDPPTNYPG-VNYYWARDYFPNFVE--EDKRVFVSYDGAL---YFSALEQIDAGNYSCNVQSK  373 (813)
Q Consensus       310 ~~~~~l~C~~~~~~p~-~~v~W~k~~~~~~~~--~~~~~~~~~~~~L---~i~~v~~~D~G~Y~C~a~n~  373 (813)
                      ++.++|.|.+.+-+|. ..++|++||+++...  ......-..++++   ....+...|...|+|.+.+.
T Consensus        15 ~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~ytC~V~H~   84 (94)
T d1de4a1          15 SSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHP   84 (94)
T ss_dssp             SSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEEEEEECT
T ss_pred             CCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEEEEEEeC
Confidence            4567899998666776 699999999886433  2233334445543   33345566777999999875

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.11  E-value=0.00061  Score=52.93  Aligned_cols=67  Identities=19%  Similarity=0.179  Sum_probs=40.6

Q ss_pred             cccEEEEeeeccC-C-CCeEEEeeccccccccc-ccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCc
Q psy14896        209 LNDITLSCYAGGY-P-NPSYEWFKEDYVQDRLV-ANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKF  280 (813)
Q Consensus       209 g~~v~l~C~~~g~-P-~p~v~W~k~g~~l~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~  280 (813)
                      |+..+|.|.+.|+ | ...|+|.+||+++.... ........+..|.. ...|.+.    .+|...|+|++.+..
T Consensus        19 ~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~-~s~l~v~----~~~~~~ytC~V~H~s   88 (99)
T d1uvqa1          19 GQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFK-ISYLTFL----PSADEIYDCKVEHWG   88 (99)
T ss_dssp             TSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEE-EEEEEEC----CCTTCCEEEEEECTT
T ss_pred             CCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEE-EEEEEEc----CCCCCEEEEEEEeCC
Confidence            3668999999985 5 45899999998875322 11122223333322 1123333    345568999999763

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.11  E-value=0.0012  Score=52.67  Aligned_cols=78  Identities=21%  Similarity=0.407  Sum_probs=48.1

Q ss_pred             eCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecc--ccccccc------ccccccCCCccEEeeC-----CeEEE
Q psy14896        194 KQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKED--YVQDRLV------ANLIDPLSDKRFTLSG-----GNLII  260 (813)
Q Consensus       194 ~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g--~~l~~~~------~~~~~~~~~~~~~~~~-----~~l~i  260 (813)
                      ..|..+++.+|     ++|+|.|...+ ....+.|||..  +.+....      ..........++....     .+|.|
T Consensus         4 Q~P~~~~~~~G-----~svtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i   77 (111)
T d2esve1           4 QFPSHSVIEKG-----QTVTLRCDPIS-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKV   77 (111)
T ss_dssp             EECSEEEEETT-----CCEEEEEECCT-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEE
T ss_pred             ECCCEEEECCC-----CCEEEEEEECC-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEE
Confidence            44677777777     67999998754 34589999863  3221110      0111222334444331     25788


Q ss_pred             cCCccccCCeeEEEEeec
Q psy14896        261 NDPRQVEDRGSYHCKASN  278 (813)
Q Consensus       261 ~~~~~~~d~G~Y~C~a~n  278 (813)
                      .+. +.+|+|.|.|.+..
T Consensus        78 ~~~-~~~Dsa~YyCa~~~   94 (111)
T d2esve1          78 QPA-ELEDSGVYFCASSQ   94 (111)
T ss_dssp             SSC-CGGGCEEEEEEEES
T ss_pred             CCc-ccCCCceEEEeeeC
Confidence            775 89999999998653

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00035  Score=54.31  Aligned_cols=67  Identities=7%  Similarity=0.021  Sum_probs=42.2

Q ss_pred             ceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEee---CccEEEEeecccCCeeEEEEEEee
Q psy14896        578 EIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSY---DGALYFSALEQIDAGNYSCNVQSK  646 (813)
Q Consensus       578 ~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~a~n~  646 (813)
                      ..+..|++++|.|..  ......+..+|+|...............   ...+.|.+++..|+|.|+|.....
T Consensus        13 ~~v~~G~~VTL~C~~--~~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   82 (98)
T d1ugna2          13 PVVNSGGNVTLQCDS--QVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDS   82 (98)
T ss_dssp             SEEETTCCEEEEEEC--SSCCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECT
T ss_pred             CccCCCCcEEEEeCC--CCCCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEeeEcC
Confidence            457889999999996  3456788999988642111000000011   124999999999999999987544

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.10  E-value=0.00029  Score=55.32  Aligned_cols=68  Identities=13%  Similarity=0.288  Sum_probs=40.0

Q ss_pred             ccEEEEeeecc-CC-CCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecC
Q psy14896        210 NDITLSCYAGG-YP-NPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNK  279 (813)
Q Consensus       210 ~~v~l~C~~~g-~P-~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~  279 (813)
                      +.++|.|.+.| .| ...|+|++||+++............+..|.. ...|.|... .-.....|+|++.+.
T Consensus        19 ~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~-~S~L~v~~~-~w~~~~~ytC~V~H~   88 (101)
T d1cqka_          19 DLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFV-YSKLNVQKS-NWEAGNTFTCSVLHE   88 (101)
T ss_dssp             SEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEE-EEEEEEEHH-HHHTTCCEEEEEECT
T ss_pred             CcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEE-EEEEEECHH-HhCCCCEEEEEEEEC
Confidence            45999999988 46 4589999999876543322222223333322 122344321 223456799999975

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.09  E-value=0.00098  Score=53.44  Aligned_cols=78  Identities=24%  Similarity=0.304  Sum_probs=46.7

Q ss_pred             eCCCceeecCCCccccccEEEEeeeccCCCCeEEEeec--ccccccccc------cccccCCCccEEee-----CCeEEE
Q psy14896        194 KQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKE--DYVQDRLVA------NLIDPLSDKRFTLS-----GGNLII  260 (813)
Q Consensus       194 ~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~--g~~l~~~~~------~~~~~~~~~~~~~~-----~~~l~i  260 (813)
                      ..|...++.+|     ++++|.|...+ ....+.|||.  |+...-...      .........++...     ..+|.|
T Consensus         4 Q~P~~~~~~~G-----~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I   77 (112)
T d1kgce1           4 QSPRYKVAKRG-----QDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKI   77 (112)
T ss_dssp             EECSEEEEETT-----CCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEE
T ss_pred             ECCCeEEECCC-----CCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEE
Confidence            34667777777     77999999754 4568999994  222211100      01112223333332     224777


Q ss_pred             cCCccccCCeeEEEEeec
Q psy14896        261 NDPRQVEDRGSYHCKASN  278 (813)
Q Consensus       261 ~~~~~~~d~G~Y~C~a~n  278 (813)
                      .+. +.+|+|.|.|.+..
T Consensus        78 ~~~-~~~Dsa~YyCa~~~   94 (112)
T d1kgce1          78 QRT-QQEDSAVYLCASSL   94 (112)
T ss_dssp             SSC-CGGGCEEEEEEEES
T ss_pred             CCC-CcCCCEEEEEeeeC
Confidence            775 99999999998863

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.09  E-value=0.00092  Score=53.82  Aligned_cols=85  Identities=18%  Similarity=0.122  Sum_probs=50.0

Q ss_pred             CCceeecCCCeEEEecCCCCCCcceEEEeec--ccccc--c-----------cCCccEEEcc----CccEEEeeeeecCC
Q psy14896        303 APEIGNQNWGKAMFCDPPTNYPGVNYYWARD--YFPNF--V-----------EEDKRVFVSY----DGALYFSALEQIDA  363 (813)
Q Consensus       303 ~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~--~~~~~--~-----------~~~~~~~~~~----~~~L~i~~v~~~D~  363 (813)
                      ....+.+|+.++|.|....  ....+.|||-  |+.+.  .           ....+.....    ..+|.|.++..+|+
T Consensus         7 ~~~~~~~G~svtl~C~~s~--~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DS   84 (114)
T d1ogae1           7 KYLFRKEGQNVTLSCEQNL--NHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPT   84 (114)
T ss_dssp             SEEEEETTCCEEECCEECS--CCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCC
T ss_pred             CeEEEcCCCCEEEEEEEec--CCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcCCc
Confidence            4456788999999999643  3457899963  21100  0           0011122211    22699999999999


Q ss_pred             eeeEEEEeeeccccCCCCCceeeEEc
Q psy14896        364 GNYSCNVQSKVSDTGRNGPFFPLKVF  389 (813)
Q Consensus       364 G~Y~C~a~n~~g~~~~~s~~~~l~v~  389 (813)
                      |.|.|.+....+.......-..|+|.
T Consensus        85 a~YyCa~~~~~~~~~~FG~GT~LtV~  110 (114)
T d1ogae1          85 AFYLCASSSRSSYEQYFGPGTRLTVT  110 (114)
T ss_dssp             EEEEEEEESSTTSCCEECCCEEEEEE
T ss_pred             eeEEEeeccCCCCccEECCCEEEEEC
Confidence            99999765432211112333556664

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.08  E-value=0.0012  Score=52.64  Aligned_cols=80  Identities=18%  Similarity=0.219  Sum_probs=46.4

Q ss_pred             eeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecc--cccccccccc--cccCCCccEEee------CCeEEEcC
Q psy14896        193 IKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKED--YVQDRLVANL--IDPLSDKRFTLS------GGNLIIND  262 (813)
Q Consensus       193 ~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g--~~l~~~~~~~--~~~~~~~~~~~~------~~~l~i~~  262 (813)
                      +..|..+.+.+|     ++|+|.|.....-...+.|||..  +.+.-.....  .......++...      .-.|.|.+
T Consensus         4 tQ~p~~~~~~~G-----~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~   78 (110)
T d1ac6a_           4 TQTEGQVALSEE-----DFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKAS   78 (110)
T ss_dssp             EECCSEEEEETT-----EEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEE
T ss_pred             EeCCCeEEECCC-----CCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecC
Confidence            445677777777     77999998765445579999953  2221111000  000111222221      12467766


Q ss_pred             CccccCCeeEEEEeec
Q psy14896        263 PRQVEDRGSYHCKASN  278 (813)
Q Consensus       263 ~~~~~d~G~Y~C~a~n  278 (813)
                      . +.+|+|.|.|.+..
T Consensus        79 ~-~~~Dsa~YyCA~~~   93 (110)
T d1ac6a_          79 V-QESDSAVYYCALSG   93 (110)
T ss_dssp             E-CGGGCEEEEEEEEE
T ss_pred             c-CcCCCcccceeecC
Confidence            4 89999999998764

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.07  E-value=0.00029  Score=57.51  Aligned_cols=64  Identities=31%  Similarity=0.494  Sum_probs=44.0

Q ss_pred             cCCCCCCeEEEEEEecCCC--CCeEEEEeC--CcccC-----------------CCceeee------cceEEEECCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYP--VPSYNWTRR--GSPLP-----------------RNAYFEN------FNRILTIPNVKVE  734 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P--~p~i~W~k~--g~~l~-----------------~~~~~~~------~~~~L~i~~v~~~  734 (813)
                      +...+|++++|+|.++|..  ...+.|||-  |+.+.                 ...++..      ....|+|.+++.+
T Consensus        11 ~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~~~   90 (123)
T d1hxmb1          11 STKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEKQ   90 (123)
T ss_dssp             EEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCGG
T ss_pred             EEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeecccccccc
Confidence            4567899999999998754  347999983  32211                 0112211      1246999999999


Q ss_pred             CCEEEEEEEEc
Q psy14896        735 DQGEYICRASN  745 (813)
Q Consensus       735 d~G~Y~C~a~N  745 (813)
                      |+|.|.|.+..
T Consensus        91 Dsa~YyCA~~~  101 (123)
T d1hxmb1          91 DIATYYCALWE  101 (123)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cCcEEEEeeeC
Confidence            99999998753

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00032  Score=54.16  Aligned_cols=58  Identities=24%  Similarity=0.525  Sum_probs=40.0

Q ss_pred             CCCeEEEEEEecCC-CC-CeEEEEeCCcccCCCceee---ec------ceEEEECCCCCCCCEEEEEEEEcC
Q psy14896        686 AGDKVRLECVAFGY-PV-PSYNWTRRGSPLPRNAYFE---NF------NRILTIPNVKVEDQGEYICRASND  746 (813)
Q Consensus       686 ~G~~v~l~C~~~g~-P~-p~i~W~k~g~~l~~~~~~~---~~------~~~L~i~~v~~~d~G~Y~C~a~N~  746 (813)
                      .|+.++|.|.+.|+ |. ..|+|++||..+.......   ..      .+.|.+   ...|...|+|++...
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~---~~~~~~~ytC~V~H~   82 (94)
T d1t7va1          14 PGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAV---PPQDTAPYSCHVQHS   82 (94)
T ss_dssp             TTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEE---CTTCCSCEEEEEEET
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEe---CCCCCCEEEEEEEEC
Confidence            47899999999985 54 4899999999876543211   11      223444   445556899999875

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.06  E-value=0.001  Score=53.02  Aligned_cols=64  Identities=22%  Similarity=0.452  Sum_probs=43.5

Q ss_pred             cCCCCCCeEEEEEEecCCC----CCeEEEEeC--CcccC-------CC---------ceeee------cceEEEECCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYP----VPSYNWTRR--GSPLP-------RN---------AYFEN------FNRILTIPNVKV  733 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P----~p~i~W~k~--g~~l~-------~~---------~~~~~------~~~~L~i~~v~~  733 (813)
                      ..+++|++|+|+|.+.|..    ...+.|||.  |+.+.       .+         .++..      ....|.|.+++.
T Consensus        10 ~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~   89 (120)
T d2agjh1          10 TLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDP   89 (120)
T ss_dssp             SBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCG
T ss_pred             eeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeee
Confidence            4578899999999998753    246889983  33221       00         11211      123599999999


Q ss_pred             CCCEEEEEEEEc
Q psy14896        734 EDQGEYICRASN  745 (813)
Q Consensus       734 ~d~G~Y~C~a~N  745 (813)
                      +|++.|.|....
T Consensus        90 eDsAvYyCAr~~  101 (120)
T d2agjh1          90 VDTATYYCARTS  101 (120)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             ccceEEeeEecC
Confidence            999999996543

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.04  E-value=0.0014  Score=52.54  Aligned_cols=78  Identities=14%  Similarity=0.207  Sum_probs=45.7

Q ss_pred             eeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecc--cccccc------cccccccCCCccEEee----CCeEEE
Q psy14896        193 IKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKED--YVQDRL------VANLIDPLSDKRFTLS----GGNLII  260 (813)
Q Consensus       193 ~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g--~~l~~~------~~~~~~~~~~~~~~~~----~~~l~i  260 (813)
                      +..|....+.+|     ++++|.|..+. -...+.|||..  +.+.-.      ...........+....    +.+|.|
T Consensus         3 tQ~P~~~~~~~G-----~svtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I   76 (112)
T d2bnub1           3 TQTPKFQVLKTG-----QSMTLQCAQDM-NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRL   76 (112)
T ss_dssp             EEECSEEEEETT-----CCEEEEEEESS-CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEE
T ss_pred             EECCCeEEECCC-----CCEEEEEEEEC-CccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEE
Confidence            344666777666     77999999864 34679999853  222100      0001111112222221    235788


Q ss_pred             cCCccccCCeeEEEEee
Q psy14896        261 NDPRQVEDRGSYHCKAS  277 (813)
Q Consensus       261 ~~~~~~~d~G~Y~C~a~  277 (813)
                      .+. +.+|+|.|.|.+.
T Consensus        77 ~~~-~~~DsavYyCA~~   92 (112)
T d2bnub1          77 LSA-APSQTSVYFCASS   92 (112)
T ss_dssp             SSC-CGGGCEEEEEEEE
T ss_pred             CCC-CHHHCEEEEEeec
Confidence            775 8999999999875

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.04  E-value=0.0008  Score=53.30  Aligned_cols=65  Identities=17%  Similarity=0.300  Sum_probs=44.1

Q ss_pred             cCCCCCCeEEEEEEecCC--CCCeEEEEeC--Ccc----cCCC-----------cee--ee----cceEEEECCCCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGY--PVPSYNWTRR--GSP----LPRN-----------AYF--EN----FNRILTIPNVKVEDQ  736 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~--P~p~i~W~k~--g~~----l~~~-----------~~~--~~----~~~~L~i~~v~~~d~  736 (813)
                      ..+.+|++++|+|..++.  ..-.+.|+|.  |+.    +..+           .++  ..    ...+|+|.+++.+|+
T Consensus         5 ~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eDs   84 (110)
T d1u9ka_           5 YDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTDS   84 (110)
T ss_dssp             EEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             CcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCCC
Confidence            356899999999999854  3457899983  331    1000           011  11    123599999999999


Q ss_pred             EEEEEEEEcC
Q psy14896        737 GEYICRASND  746 (813)
Q Consensus       737 G~Y~C~a~N~  746 (813)
                      |.|.|...+.
T Consensus        85 a~YyCa~~~~   94 (110)
T d1u9ka_          85 GLYRCVIYHP   94 (110)
T ss_dssp             EEEEEEEECT
T ss_pred             EEEEEEEeCC
Confidence            9999987544

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.00026  Score=56.02  Aligned_cols=70  Identities=16%  Similarity=0.315  Sum_probs=40.9

Q ss_pred             ccEEEEeeecc-CC-CCeEEEeecccccccccccc--cccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCce
Q psy14896        210 NDITLSCYAGG-YP-NPSYEWFKEDYVQDRLVANL--IDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFG  281 (813)
Q Consensus       210 ~~v~l~C~~~g-~P-~p~v~W~k~g~~l~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g  281 (813)
                      +.++|.|.+.| .| ...|+|++||+++.......  .....+..|.. ...|.|... .-.....|+|++.+...
T Consensus        20 ~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~-~S~L~v~~~-~W~~g~~ytC~V~H~~l   93 (105)
T d1fp5a2          20 DKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFV-FSRLEVTRA-EWEQKDEFICRAVHEAA   93 (105)
T ss_dssp             CCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEE-EEEEEECHH-HHTTGGGEEEEEECTTS
T ss_pred             CcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEE-EEEEEECHH-HcCCCCEEEEEEEECCC
Confidence            56999999987 46 46999999998875432111  11122222322 123444321 22345579999997543

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.00021  Score=57.11  Aligned_cols=65  Identities=22%  Similarity=0.490  Sum_probs=45.9

Q ss_pred             CCCCCCeEEEEEEecCC-CCC-eEEEEeCCcccCCCceee--------------ecceEEEECCCCCCCCEEEEEEEEcC
Q psy14896        683 APKAGDKVRLECVAFGY-PVP-SYNWTRRGSPLPRNAYFE--------------NFNRILTIPNVKVEDQGEYICRASND  746 (813)
Q Consensus       683 ~~~~G~~v~l~C~~~g~-P~p-~i~W~k~g~~l~~~~~~~--------------~~~~~L~i~~v~~~d~G~Y~C~a~N~  746 (813)
                      .+..|+.++|.|.+.|+ |.. .|+|++||+++..+....              ...+.|+|..-.......|+|+|.+.
T Consensus        16 e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~~g~~ytC~V~H~   95 (108)
T d1ow0a2          16 ELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHE   95 (108)
T ss_dssp             TTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECT
T ss_pred             HhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhCCCCEEEEEEEeC
Confidence            45678899999999985 543 899999999886542110              11245777655555567999999885


Q ss_pred             C
Q psy14896        747 R  747 (813)
Q Consensus       747 ~  747 (813)
                      .
T Consensus        96 s   96 (108)
T d1ow0a2          96 A   96 (108)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.00017  Score=55.76  Aligned_cols=66  Identities=26%  Similarity=0.342  Sum_probs=43.7

Q ss_pred             cCCCceEEeCCCCCCCc-cEEEEccCCCCCcccCCCeEEEeeCcc---EEEEeecccCCeeEEEEEEeee
Q psy14896        582 QNWGKAMFCDPPTNYPG-VNYYWARDYFPNFVEEDKRVFVSYDGA---LYFSALEQIDAGNYSCNVQSKV  647 (813)
Q Consensus       582 ~g~~~~l~C~~~~~~p~-~~v~W~k~~~~~~~~~~~~~~~~~~~~---L~i~~~~~~d~G~Y~C~a~n~~  647 (813)
                      .+..++|.|.+.+-+|. ..|+|++||.+.............+++   .....+...|...|+|.+.+..
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC~V~H~s   83 (94)
T d1t7va1          14 PGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHSS   83 (94)
T ss_dssp             TTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEEEEEETT
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEEEEEECC
Confidence            36788999999655775 689999999753221112222334454   3344556677789999999864

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=97.00  E-value=0.00014  Score=56.42  Aligned_cols=66  Identities=15%  Similarity=0.180  Sum_probs=44.0

Q ss_pred             CCCceEEeCCCCCCCcc-EEEEccCCCCCcccCCCeEEEeeCccEE---EEeecccCCeeEEEEEEeeec
Q psy14896        583 NWGKAMFCDPPTNYPGV-NYYWARDYFPNFVEEDKRVFVSYDGALY---FSALEQIDAGNYSCNVQSKVS  648 (813)
Q Consensus       583 g~~~~l~C~~~~~~p~~-~v~W~k~~~~~~~~~~~~~~~~~~~~L~---i~~~~~~d~G~Y~C~a~n~~g  648 (813)
                      +..++|.|.+.+.+|.. .|+|++|+...............+|++.   ...+..+|...|+|.+.+..-
T Consensus        16 ~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~V~H~sL   85 (96)
T d2h26a1          16 PGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVADGEAAGLSCRVKHSSL   85 (96)
T ss_dssp             TTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEEGGGCTTEEEEEEEGGG
T ss_pred             CCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEeCccCCEEEEEEEeCCC
Confidence            45689999996667764 8999999865322222223345566632   234456677899999999763

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00044  Score=54.39  Aligned_cols=69  Identities=20%  Similarity=0.402  Sum_probs=40.2

Q ss_pred             ccEEEEeeecc-CCC-CeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCc
Q psy14896        210 NDITLSCYAGG-YPN-PSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKF  280 (813)
Q Consensus       210 ~~v~l~C~~~g-~P~-p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~  280 (813)
                      +.++|.|.+.| .|. ..|+|++||++.............+..|.. ...|.|... .-...-.|+|++.+..
T Consensus        20 ~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~-~S~L~v~~~-~w~~g~~ytC~V~H~~   90 (102)
T d1l6xa2          20 NQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFL-YSKLTVDKS-RWQQGNVFSCSVMHEA   90 (102)
T ss_dssp             SEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEE-EEEEEEEHH-HHHTTCCEEEEEECTT
T ss_pred             CceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEE-EEEEEECHH-HcCCCCEEEEEEEeCC
Confidence            55999999988 464 499999999876443222222222333322 122444331 2233456999999754

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.0012  Score=51.89  Aligned_cols=70  Identities=13%  Similarity=0.348  Sum_probs=39.5

Q ss_pred             ccEEEEeeecc-CCC-CeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCe---eEEEEeecCcee
Q psy14896        210 NDITLSCYAGG-YPN-PSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG---SYHCKASNKFGS  282 (813)
Q Consensus       210 ~~v~l~C~~~g-~P~-p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G---~Y~C~a~n~~g~  282 (813)
                      +.++|.|.+.| .|. ..|+|.++|+.+............+..|... ..|.|..  ..-+.|   .|+|+|.+..+.
T Consensus        22 ~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~-S~L~v~~--~eW~~~~~~~ytC~V~H~~~~   96 (105)
T d1dn0b2          22 SSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAAT-SQVLLPS--KDVMAGTDEHVVCKVQHPNGN   96 (105)
T ss_dssp             CSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEE-EEEEECT--TCC---CCCEEEEEEECTTCC
T ss_pred             CceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEE-EEEEEcH--HHhccCCCCEEEEEEEECCCC
Confidence            55999999988 564 5899999998764332211111122222221 2344433  223333   799999987654

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.99  E-value=0.00089  Score=53.05  Aligned_cols=77  Identities=25%  Similarity=0.387  Sum_probs=45.8

Q ss_pred             CCCceeecCCCccccccEEEEeeeccCCCCeEEEeec--cccccccccc--ccccCCCccEEee----CCeEEEcCCccc
Q psy14896        195 QPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKE--DYVQDRLVAN--LIDPLSDKRFTLS----GGNLIINDPRQV  266 (813)
Q Consensus       195 ~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~--g~~l~~~~~~--~~~~~~~~~~~~~----~~~l~i~~~~~~  266 (813)
                      +|..+.+.+|     ++|+|.|.........+.|||.  |+.+......  ........++...    +.+|.|.+. +.
T Consensus         5 QP~s~~~~~G-----~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l-~~   78 (108)
T d1nfde1           5 QPSSASVTVG-----ETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGA-QP   78 (108)
T ss_dssp             CCSEEEEETT-----SCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTC-CG
T ss_pred             CCCeeEECCC-----CCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCc-cc
Confidence            3556677666     7799999986544557999984  3322211100  0011122233332    235777775 99


Q ss_pred             cCCeeEEEEee
Q psy14896        267 EDRGSYHCKAS  277 (813)
Q Consensus       267 ~d~G~Y~C~a~  277 (813)
                      +|+|.|.|.+.
T Consensus        79 ~Dsa~YyCA~~   89 (108)
T d1nfde1          79 EDEAAYYCLSS   89 (108)
T ss_dssp             GGCSEEEEEEE
T ss_pred             cCCceEEEEee
Confidence            99999999876

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=96.98  E-value=0.00071  Score=52.55  Aligned_cols=60  Identities=17%  Similarity=0.246  Sum_probs=41.3

Q ss_pred             CCCCCeEEEEEEecCC-CC-CeEEEEeCCcccCCCcee----eec------ceEEEECCCCCCCCEEEEEEEEcC
Q psy14896        684 PKAGDKVRLECVAFGY-PV-PSYNWTRRGSPLPRNAYF----ENF------NRILTIPNVKVEDQGEYICRASND  746 (813)
Q Consensus       684 ~~~G~~v~l~C~~~g~-P~-p~i~W~k~g~~l~~~~~~----~~~------~~~L~i~~v~~~d~G~Y~C~a~N~  746 (813)
                      +..|+..+|.|.+.|+ |. ..|+|++||.++..+...    ...      .+.|.+..   +|...|+|++...
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~---~~~~~ytC~V~H~   87 (99)
T d1uvqa1          16 VTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLP---SADEIYDCKVEHW   87 (99)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECC---CTTCCEEEEEECT
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcC---CCCCEEEEEEEeC
Confidence            3457888999999987 43 489999999988654211    111      23466543   4455899999875

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.00052  Score=53.93  Aligned_cols=61  Identities=20%  Similarity=0.415  Sum_probs=43.6

Q ss_pred             CCeEEEEEEecCC-CC-CeEEEEeCCcccCCCcee----e------ecceEEEECCCCCCCCEEEEEEEEcCC
Q psy14896        687 GDKVRLECVAFGY-PV-PSYNWTRRGSPLPRNAYF----E------NFNRILTIPNVKVEDQGEYICRASNDR  747 (813)
Q Consensus       687 G~~v~l~C~~~g~-P~-p~i~W~k~g~~l~~~~~~----~------~~~~~L~i~~v~~~d~G~Y~C~a~N~~  747 (813)
                      ++.++|.|.+.|+ |. ..|+|++||+++..+...    .      ...+.|+|..-.......|+|+|.+..
T Consensus        20 ~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   92 (102)
T d1q0xl2          20 TAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEG   92 (102)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETT
T ss_pred             CCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            5678999999986 43 489999999887544311    1      113457776666666789999999864

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.98  E-value=0.00049  Score=54.10  Aligned_cols=69  Identities=14%  Similarity=0.316  Sum_probs=40.9

Q ss_pred             ccEEEEeeeccC-CC-CeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCc
Q psy14896        210 NDITLSCYAGGY-PN-PSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKF  280 (813)
Q Consensus       210 ~~v~l~C~~~g~-P~-p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~  280 (813)
                      +.++|.|.+.|. |. ..|+|.+||+++............+..|... ..|.|... .-.....|+|+|....
T Consensus        20 ~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~-S~L~v~~~-~w~~~~~ytC~V~H~~   90 (102)
T d1i1ca2          20 SQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLY-SKLNVKKE-TWQQGNTFTCSVLHEG   90 (102)
T ss_dssp             SEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEE-EEEEEEHH-HHHTTCCEEEEEECTT
T ss_pred             CeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEE-EEEEECHH-HhCCCCEEEEEEEeCC
Confidence            458999999873 54 5899999998765433222222333333321 22444332 2344557999999753

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.95  E-value=0.0011  Score=52.58  Aligned_cols=68  Identities=9%  Similarity=0.064  Sum_probs=39.9

Q ss_pred             ccEEEEeeecc-CCCC-eEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCce
Q psy14896        210 NDITLSCYAGG-YPNP-SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFG  281 (813)
Q Consensus       210 ~~v~l~C~~~g-~P~p-~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g  281 (813)
                      +.++|.|.+.| .|.. .|+|.+||..+............+..+.. ...|.+...   +....|+|.+.+...
T Consensus        25 ~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~-~S~L~v~~~---~w~~~ytC~V~H~s~   94 (107)
T d1hxmb2          25 KAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMK-FSWLTVPEK---SLDKEHRCIVRHENN   94 (107)
T ss_dssp             SCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEE-EEEEEECTG---GGGSCEEEEEEETTS
T ss_pred             CcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEE-EEEEEEecc---cCCCeEEEEEEECCC
Confidence            56999999987 4644 89999999876543322111222333332 123444331   223379999997544

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=96.95  E-value=0.00088  Score=52.91  Aligned_cols=61  Identities=21%  Similarity=0.458  Sum_probs=42.5

Q ss_pred             cCCCCCCeEEEEEEecCCCCC--eEEEEeC--Cccc------CCC----------ceee--e----cceEEEECCCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYPVP--SYNWTRR--GSPL------PRN----------AYFE--N----FNRILTIPNVKVED  735 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p--~i~W~k~--g~~l------~~~----------~~~~--~----~~~~L~i~~v~~~d  735 (813)
                      ..++.|++++|+|.++|+.-.  .+.|+|.  |+.|      ..+          .++.  .    ....|.|.+++.+|
T Consensus        10 ~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~eD   89 (120)
T d1dn0b1          10 GLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAAD   89 (120)
T ss_dssp             CEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             cEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheeccccccccccc
Confidence            456889999999999987643  6889983  3332      111          1111  1    11349999999999


Q ss_pred             CEEEEEE
Q psy14896        736 QGEYICR  742 (813)
Q Consensus       736 ~G~Y~C~  742 (813)
                      ++.|.|.
T Consensus        90 tA~YYCA   96 (120)
T d1dn0b1          90 TAVYYCA   96 (120)
T ss_dssp             CEEEEEE
T ss_pred             ccEEEEE
Confidence            9999994

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=96.95  E-value=0.00043  Score=54.15  Aligned_cols=68  Identities=12%  Similarity=0.065  Sum_probs=45.9

Q ss_pred             eccCCCceEEeCCCCCCCc-cEEEEccCCCCCcccCCCeEEEeeCccEEEE---eecccCCeeEEEEEEeee
Q psy14896        580 GNQNWGKAMFCDPPTNYPG-VNYYWARDYFPNFVEEDKRVFVSYDGALYFS---ALEQIDAGNYSCNVQSKV  647 (813)
Q Consensus       580 ~~~g~~~~l~C~~~~~~p~-~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~---~~~~~d~G~Y~C~a~n~~  647 (813)
                      +..|+..+|.|.+.+-+|. ..|+|++||...............+|++.+.   .+..+|...|+|.+.+..
T Consensus        15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~V~H~~   86 (103)
T d1hdma1          15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNFTPEPSDIFSCIVTHEP   86 (103)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEECCCTTCCEEEEEEETT
T ss_pred             hhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEEecCCCCEEEEEEEeCC
Confidence            3557778999999655664 7899999997643222333444556764332   345667778999999864

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.00034  Score=55.07  Aligned_cols=70  Identities=21%  Similarity=0.374  Sum_probs=39.7

Q ss_pred             ccEEEEeeecc-CCC-CeEEEeecccccccccc-cccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCce
Q psy14896        210 NDITLSCYAGG-YPN-PSYEWFKEDYVQDRLVA-NLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFG  281 (813)
Q Consensus       210 ~~v~l~C~~~g-~P~-p~v~W~k~g~~l~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g  281 (813)
                      +.++|.|.+.| .|. ..|+|++||+++..... .......+..|... ..|.|... .-.....|+|++.+...
T Consensus        21 ~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~-S~L~v~~~-~w~~~~~ytC~V~H~~~   93 (102)
T d1rzfl2          21 NKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAAS-SYLSLTPE-QWKSHRSYSCQVTHEGS   93 (102)
T ss_dssp             TCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEE-EEEEECHH-HHHHSSCEEEEEEETTE
T ss_pred             CcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEE-EEEEECHH-HhCCCCEEEEEEEECCc
Confidence            55999999988 453 48999999987754321 11111222223221 12333221 11235569999998643

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.0013  Score=53.38  Aligned_cols=70  Identities=16%  Similarity=0.105  Sum_probs=42.8

Q ss_pred             ceeecCCCeEEEecCCCCCCc--ceEEEeeccc--cccc-----cCC--------ccEEEccC---ccEEEeeeeecCCe
Q psy14896        305 EIGNQNWGKAMFCDPPTNYPG--VNYYWARDYF--PNFV-----EED--------KRVFVSYD---GALYFSALEQIDAG  364 (813)
Q Consensus       305 ~~~~~~~~~~l~C~~~~~~p~--~~v~W~k~~~--~~~~-----~~~--------~~~~~~~~---~~L~i~~v~~~D~G  364 (813)
                      ..+.+|+.++|.|....+...  ..+.|+|...  ...+     ...        .......+   ..|.|.+++.+|+|
T Consensus         9 ~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   88 (118)
T d1i8lc_           9 VLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTG   88 (118)
T ss_dssp             EECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGGGCE
T ss_pred             EEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccCCCE
Confidence            455678889999986443322  3688997532  1100     000        00001111   26999999999999


Q ss_pred             eeEEEEeeec
Q psy14896        365 NYSCNVQSKV  374 (813)
Q Consensus       365 ~Y~C~a~n~~  374 (813)
                      .|.|.+....
T Consensus        89 ~YyCa~~~~~   98 (118)
T d1i8lc_          89 LYICKVELMY   98 (118)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEeEeccc
Confidence            9999887543

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=96.93  E-value=0.0011  Score=51.32  Aligned_cols=67  Identities=19%  Similarity=0.354  Sum_probs=38.5

Q ss_pred             ccEEEEeeecc-CCC-CeEEEeecccccccccc-cccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCce
Q psy14896        210 NDITLSCYAGG-YPN-PSYEWFKEDYVQDRLVA-NLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFG  281 (813)
Q Consensus       210 ~~v~l~C~~~g-~P~-p~v~W~k~g~~l~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g  281 (813)
                      +..+|.|.+.| .|. ..|+|++||.++..... .......+..|..    +..... ..++...|+|++.+..-
T Consensus        19 ~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~----~s~l~~-~~~~~~~ytC~V~H~sl   88 (98)
T d1d5mb1          19 HHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQT----LVMLET-VPRSGEVYTCQVEHPSV   88 (98)
T ss_dssp             --CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEE----EEEEEC-CCCTTCEEEEEEECTTC
T ss_pred             CceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEE----EEEeeE-cCCCCCEEEEEEEECCC
Confidence            55789999988 354 49999999987643221 1111122222211    112222 45678899999998643

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.91  E-value=0.00014  Score=57.58  Aligned_cols=70  Identities=17%  Similarity=0.303  Sum_probs=41.0

Q ss_pred             ccEEEEeeecc-CCC-CeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCce
Q psy14896        210 NDITLSCYAGG-YPN-PSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFG  281 (813)
Q Consensus       210 ~~v~l~C~~~g-~P~-p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g  281 (813)
                      +.++|.|.+.| .|. ..|.|++||+++............+..|... ..|.|... +-.+...|+|+|.+...
T Consensus        21 ~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~-S~l~v~~~-~w~~~~~ytC~V~H~~~   92 (104)
T d1nfde2          21 NKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTS-SYLSLTAD-QWKSHNRVSCQVTHEGE   92 (104)
T ss_dssp             TEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEE-EBCCEEHH-HHHTCSCEEEEEECTTT
T ss_pred             CcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEEE-EEEEEcHH-HcCCCCEEEEEEEECCC
Confidence            45899999988 564 4899999999875433222112223333221 12233221 22455679999998654

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.91  E-value=0.00042  Score=55.70  Aligned_cols=65  Identities=22%  Similarity=0.344  Sum_probs=44.6

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeC--CcccC-------CCc--------e-----eeecceEEEECCCCCCCCEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRR--GSPLP-------RNA--------Y-----FENFNRILTIPNVKVEDQGEY  739 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~--g~~l~-------~~~--------~-----~~~~~~~L~i~~v~~~d~G~Y  739 (813)
                      ..+.+|++++|.|..... ...+.|||-  |+.+.       .+.        .     .......|.|.+++.+|+|.|
T Consensus         8 ~~~~~G~svtL~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~Y   86 (112)
T d2cdeb1           8 LVIGTGKKITLECSQTMG-HDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSHTSQY   86 (112)
T ss_dssp             EEEETTCCBCCEEEETTC-CSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTTTCSEE
T ss_pred             EEECCCCCEEEEEEEeCC-cccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeeccccccccccE
Confidence            457899999999997643 357999983  22210       000        0     011234699999999999999


Q ss_pred             EEEEEcCC
Q psy14896        740 ICRASNDR  747 (813)
Q Consensus       740 ~C~a~N~~  747 (813)
                      .|.+....
T Consensus        87 yCA~~~~~   94 (112)
T d2cdeb1          87 LCASSENI   94 (112)
T ss_dssp             EEEEECSS
T ss_pred             EEEEecCC
Confidence            99887543

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=96.90  E-value=0.0016  Score=50.68  Aligned_cols=68  Identities=16%  Similarity=0.291  Sum_probs=41.5

Q ss_pred             ccccCeEEEEEeecc-CC-CcEEEeecccccccee-ccccCCCCCceEEeeCCeEEEeCCCCCCCCceEEEEEEcC
Q psy14896        480 SILNDITLSCYAGGY-PN-PSYEWFKEDYVQDRLV-ANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNK  552 (813)
Q Consensus       480 ~~g~~~~l~C~~~g~-p~-~~v~W~k~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~  552 (813)
                      ..|+..+|.|.+.|+ |. ..|+|++||+++.... .....+..+..+.. .+.|.+..    .+...|+|++...
T Consensus        17 ~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~-~S~L~v~~----~~~~~ytC~V~H~   87 (101)
T d1fnga1          17 NLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRK-FHYLTFLP----STDDFYDCEVDHW   87 (101)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEE-EEEEEECC----CTTCCEEEEEECT
T ss_pred             cCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEE-EEEeEEcC----CCCCEEEEEEEEC
Confidence            457788999999995 54 5899999998764321 11112222222221 23455543    3345799999886

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.89  E-value=0.0015  Score=52.27  Aligned_cols=80  Identities=15%  Similarity=0.357  Sum_probs=46.2

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecc--cccccccc-----cccccCCCccEEee-----CCeEE
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKED--YVQDRLVA-----NLIDPLSDKRFTLS-----GGNLI  259 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g--~~l~~~~~-----~~~~~~~~~~~~~~-----~~~l~  259 (813)
                      ++..|..+++.+|     ++++|.|.... -...+.|||..  +.+.....     .........++...     ..+|.
T Consensus         4 VtQ~P~~~~~~~G-----~~v~l~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~   77 (113)
T d1nfdb1           4 VVQSPRHIIKEKG-----GRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMN   77 (113)
T ss_dssp             CEEECSEEEEETT-----CCCEEEEECCT-TCCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEE
T ss_pred             EEEcCCEEEEeCC-----CCEEEEEEeCC-CCCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEE
Confidence            4555777887777     67999999754 34579999863  22211100     00001111222211     12466


Q ss_pred             EcCCccccCCeeEEEEeec
Q psy14896        260 INDPRQVEDRGSYHCKASN  278 (813)
Q Consensus       260 i~~~~~~~d~G~Y~C~a~n  278 (813)
                      |.+ ++.+|+|.|.|.+..
T Consensus        78 I~~-~~~~Dsa~YyCa~~~   95 (113)
T d1nfdb1          78 MSA-LELEDSAMYFCASSL   95 (113)
T ss_dssp             CCS-CCGGGCEEECEEEES
T ss_pred             ecc-cCcCCceeEEEEeec
Confidence            666 599999999998764

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=96.89  E-value=0.0013  Score=51.89  Aligned_cols=67  Identities=18%  Similarity=0.328  Sum_probs=41.1

Q ss_pred             ccccEEEEeeeccCCC--CeEEEeec--ccccccc------cccccccCCCccEEee----CC--eEEEcCCccccCCee
Q psy14896        208 ILNDITLSCYAGGYPN--PSYEWFKE--DYVQDRL------VANLIDPLSDKRFTLS----GG--NLIINDPRQVEDRGS  271 (813)
Q Consensus       208 ~g~~v~l~C~~~g~P~--p~v~W~k~--g~~l~~~------~~~~~~~~~~~~~~~~----~~--~l~i~~~~~~~d~G~  271 (813)
                      .|++++|.|+++|...  -.+.|+|.  |+.++=.      ......+.-..|+++.    ..  .|.|.+. +.+|++.
T Consensus        14 PG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l-~~eDtA~   92 (120)
T d1dn0b1          14 PSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSV-TAADTAV   92 (120)
T ss_dssp             TTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSC-CGGGCEE
T ss_pred             CCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheeccccccc-ccccccE
Confidence            3588999999998654  36889986  3332211      0111222334456553    11  2666665 8999999


Q ss_pred             EEEE
Q psy14896        272 YHCK  275 (813)
Q Consensus       272 Y~C~  275 (813)
                      |.|.
T Consensus        93 YYCA   96 (120)
T d1dn0b1          93 YYCA   96 (120)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9994

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.88  E-value=0.00081  Score=51.10  Aligned_cols=66  Identities=18%  Similarity=0.376  Sum_probs=39.7

Q ss_pred             ccEEEEeeeccC-C-CCeEEEeecccccccccc-cccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCc
Q psy14896        210 NDITLSCYAGGY-P-NPSYEWFKEDYVQDRLVA-NLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKF  280 (813)
Q Consensus       210 ~~v~l~C~~~g~-P-~p~v~W~k~g~~l~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~  280 (813)
                      +.++|.|.|.|+ | ...|+|.+||+.+..... .......+..+... ..|.|.    ..+...|+|.+....
T Consensus        16 ~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~-s~l~v~----~~~~~~ytC~V~H~~   84 (89)
T d2mhaa1          16 DKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKW-ASVVVP----LGKEQYYTCHVYHQG   84 (89)
T ss_dssp             SEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEE-EEEEEE----SSTTTTCEEEEECSS
T ss_pred             CCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEE-EEEEec----CcCCCEEEEEEEECC
Confidence            569999999984 4 348999999987743221 11222333333322 234443    234457999998753

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.0018  Score=46.67  Aligned_cols=61  Identities=20%  Similarity=0.334  Sum_probs=40.4

Q ss_pred             cccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeec
Q psy14896        209 LNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASN  278 (813)
Q Consensus       209 g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n  278 (813)
                      |-+|+|+|.-.  +...|.|.|++..+..       ...+.........|.+.+--..+++|.|.|.+..
T Consensus        10 GTtV~LTCP~~--~~~~i~W~~n~~~~~~-------~~~~~~~~~~~~~l~L~dfSe~e~sGyY~C~~~~   70 (91)
T d1xiwa_          10 GTTVILTCPQY--PGSEILWQHNDKNIGG-------DEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRG   70 (91)
T ss_dssp             TTEEEEECSSC--TTSCEEEEETTEEESS-------SCSCTTEEEETTEEEETTCCHHHHCEEEEEEETT
T ss_pred             CCEEEEECCCC--CCCceeeeeccccccC-------CCcccccccccceEEecccCccccCceEEEEcCC
Confidence            46699999743  4468999999976531       1222333344556677664235899999999864

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=96.87  E-value=0.00067  Score=53.29  Aligned_cols=69  Identities=19%  Similarity=0.286  Sum_probs=40.4

Q ss_pred             ccEEEEeeecc-CCC-CeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCc
Q psy14896        210 NDITLSCYAGG-YPN-PSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKF  280 (813)
Q Consensus       210 ~~v~l~C~~~g-~P~-p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~  280 (813)
                      +.++|.|.+.| .|. ..|+|.+||++.............+..|.. ...|.|... .-+....|+|++.+..
T Consensus        20 ~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~-~S~L~v~~~-~W~~~~~ytC~V~H~~   90 (102)
T d1igtb4          20 KQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFM-YSKLRVEKK-NWVERNSYSCSVVHEG   90 (102)
T ss_dssp             SEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEE-EEEEEEEHH-HHHTCCCEEEEEECTT
T ss_pred             CcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEE-EEEEEECHH-HcCCCCEEEEEEEeCC
Confidence            56999999988 464 589999999865433322222223333332 123444321 1123557999999753

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.87  E-value=0.0013  Score=51.95  Aligned_cols=64  Identities=28%  Similarity=0.506  Sum_probs=43.9

Q ss_pred             cCCCCCCeEEEEEEecCCCC--CeEEEEeC--Cccc------CCCc----------eee--ec----ceEEEECCCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYPV--PSYNWTRR--GSPL------PRNA----------YFE--NF----NRILTIPNVKVED  735 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~--p~i~W~k~--g~~l------~~~~----------~~~--~~----~~~L~i~~v~~~d  735 (813)
                      ..+++|++++|+|.+.|+..  -.+.|+|.  |+.+      ..+.          ++.  .+    ...|.|.+++.+|
T Consensus         9 ~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~eD   88 (119)
T d1kxvc_           9 GTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDD   88 (119)
T ss_dssp             EEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcCC
Confidence            45688999999999998763  36889884  3322      1110          111  11    1259999999999


Q ss_pred             CEEEEEEEEc
Q psy14896        736 QGEYICRASN  745 (813)
Q Consensus       736 ~G~Y~C~a~N  745 (813)
                      ++.|.|.+..
T Consensus        89 tA~YYCAr~~   98 (119)
T d1kxvc_          89 TAMYYCKPSL   98 (119)
T ss_dssp             CEEEEEEEEE
T ss_pred             cceEeeeecc
Confidence            9999997644

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.85  E-value=0.00072  Score=53.57  Aligned_cols=70  Identities=16%  Similarity=0.148  Sum_probs=45.8

Q ss_pred             ceeecCCCeEEEecCCC-CCCcceEEEeec--ccc---cccc----------CCccEEEccCc-----cEEEeeeeecCC
Q psy14896        305 EIGNQNWGKAMFCDPPT-NYPGVNYYWARD--YFP---NFVE----------EDKRVFVSYDG-----ALYFSALEQIDA  363 (813)
Q Consensus       305 ~~~~~~~~~~l~C~~~~-~~p~~~v~W~k~--~~~---~~~~----------~~~~~~~~~~~-----~L~i~~v~~~D~  363 (813)
                      ..+.+|+.++|.|.... ......+.|+|-  |+.   +...          ...|+.+..+.     +|+|.+++.+|+
T Consensus         5 ~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eDs   84 (110)
T d1u9ka_           5 YDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTDS   84 (110)
T ss_dssp             EEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             CcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCCC
Confidence            35678999999999632 224457889973  321   1010          02355554432     599999999999


Q ss_pred             eeeEEEEeeec
Q psy14896        364 GNYSCNVQSKV  374 (813)
Q Consensus       364 G~Y~C~a~n~~  374 (813)
                      |.|.|......
T Consensus        85 a~YyCa~~~~~   95 (110)
T d1u9ka_          85 GLYRCVIYHPP   95 (110)
T ss_dssp             EEEEEEEECTT
T ss_pred             EEEEEEEeCCC
Confidence            99999875543

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.85  E-value=0.00095  Score=53.55  Aligned_cols=69  Identities=22%  Similarity=0.246  Sum_probs=43.9

Q ss_pred             CCCceeecCCCeEEEecCCCCCCcceEEEeecc--ccc-cc---c---------CCccEEEcc----CccEEEeeeeecC
Q psy14896        302 RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDY--FPN-FV---E---------EDKRVFVSY----DGALYFSALEQID  362 (813)
Q Consensus       302 ~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~--~~~-~~---~---------~~~~~~~~~----~~~L~i~~v~~~D  362 (813)
                      +....+.+|+.++|.|....+.  ..+.|||-.  +.+ .+   .         ...++....    ...|.|.++..+|
T Consensus         8 P~~~~~~~G~~v~l~C~~~~~~--~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   85 (113)
T d1nfdb1           8 PRHIIKEKGGRSVLTCIPISGH--SNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELED   85 (113)
T ss_dssp             CSEEEEETTCCCEEEEECCTTC--CEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCCGGG
T ss_pred             CCEEEEeCCCCEEEEEEeCCCC--CEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccCcCC
Confidence            3445678899999999964443  479999732  111 00   0         011222111    1269999999999


Q ss_pred             CeeeEEEEee
Q psy14896        363 AGNYSCNVQS  372 (813)
Q Consensus       363 ~G~Y~C~a~n  372 (813)
                      +|.|.|.+..
T Consensus        86 sa~YyCa~~~   95 (113)
T d1nfdb1          86 SAMYFCASSL   95 (113)
T ss_dssp             CEEECEEEES
T ss_pred             ceeEEEEeec
Confidence            9999998754

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.00037  Score=54.87  Aligned_cols=61  Identities=16%  Similarity=0.408  Sum_probs=42.7

Q ss_pred             CCeEEEEEEecCC-CC-CeEEEEeCCcccCCCcee----eec------ceEEEECCCCCCCCEEEEEEEEcCC
Q psy14896        687 GDKVRLECVAFGY-PV-PSYNWTRRGSPLPRNAYF----ENF------NRILTIPNVKVEDQGEYICRASNDR  747 (813)
Q Consensus       687 G~~v~l~C~~~g~-P~-p~i~W~k~g~~l~~~~~~----~~~------~~~L~i~~v~~~d~G~Y~C~a~N~~  747 (813)
                      ++.++|.|.+.|+ |. ..|+|++||..+..+...    ...      .+.|+|..........|+|++.+..
T Consensus        20 ~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   92 (102)
T d1rzfl2          20 ANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEG   92 (102)
T ss_dssp             TTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSCEEEEEEETT
T ss_pred             CCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            5678999999985 43 389999999988755321    111      2457776555444568999999863

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.83  E-value=0.00059  Score=51.87  Aligned_cols=58  Identities=22%  Similarity=0.424  Sum_probs=39.4

Q ss_pred             CCCeEEEEEEecCCCCC--eEEEEeCCcccCCCceee----------ecceEEEECCCCCCCCEEEEEEEEcC
Q psy14896        686 AGDKVRLECVAFGYPVP--SYNWTRRGSPLPRNAYFE----------NFNRILTIPNVKVEDQGEYICRASND  746 (813)
Q Consensus       686 ~G~~v~l~C~~~g~P~p--~i~W~k~g~~l~~~~~~~----------~~~~~L~i~~v~~~d~G~Y~C~a~N~  746 (813)
                      .++.++|.|.|.|+-+.  .|+|++||+.+..+....          ...+.|.|..-   +...|+|++...
T Consensus        14 ~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~---~~~~ytC~V~H~   83 (89)
T d2mhaa1          14 PEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLG---KEQYYTCHVYHQ   83 (89)
T ss_dssp             CSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEESS---TTTTCEEEEECS
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEecCc---CCCEEEEEEEEC
Confidence            45789999999996543  789999999886543221          11234666543   333699999865

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=96.83  E-value=0.00016  Score=56.98  Aligned_cols=66  Identities=15%  Similarity=0.273  Sum_probs=41.2

Q ss_pred             cCCCceEEeCCCCCCCc-cEEEEccCCCCCcccCCCeEEEeeCcc------EEEEeecccCCeeEEEEEEeee
Q psy14896        582 QNWGKAMFCDPPTNYPG-VNYYWARDYFPNFVEEDKRVFVSYDGA------LYFSALEQIDAGNYSCNVQSKV  647 (813)
Q Consensus       582 ~g~~~~l~C~~~~~~p~-~~v~W~k~~~~~~~~~~~~~~~~~~~~------L~i~~~~~~d~G~Y~C~a~n~~  647 (813)
                      .+..++|.|.+.+-+|. ..|+|.+||.+.............+|+      |.|..-.......|+|.+.+..
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   90 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEG   90 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            46678999999544564 789999998653222112222344554      4444333345678999999864

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.83  E-value=0.0014  Score=52.91  Aligned_cols=69  Identities=16%  Similarity=0.100  Sum_probs=41.9

Q ss_pred             ceeecCCCeEEEecCCCCCC--cceEEEeec--ccccc-----ccC--------CccEEEc--c-CccEEEeeeeecCCe
Q psy14896        305 EIGNQNWGKAMFCDPPTNYP--GVNYYWARD--YFPNF-----VEE--------DKRVFVS--Y-DGALYFSALEQIDAG  364 (813)
Q Consensus       305 ~~~~~~~~~~l~C~~~~~~p--~~~v~W~k~--~~~~~-----~~~--------~~~~~~~--~-~~~L~i~~v~~~D~G  364 (813)
                      ..+.+|+.++|.|....+..  ...+.|+|.  |+...     ...        .......  . ...|.|.+++.+|+|
T Consensus         9 ~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   88 (117)
T d1dqta_           9 VLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAVDTG   88 (117)
T ss_dssp             EECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             EEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccccCE
Confidence            45567888999998633322  245789973  22110     000        0011111  1 126999999999999


Q ss_pred             eeEEEEeee
Q psy14896        365 NYSCNVQSK  373 (813)
Q Consensus       365 ~Y~C~a~n~  373 (813)
                      .|.|.+...
T Consensus        89 ~YyCa~~~~   97 (117)
T d1dqta_          89 LYLCKVELM   97 (117)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEEEecC
Confidence            999988754

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.82  E-value=0.00018  Score=56.76  Aligned_cols=65  Identities=15%  Similarity=0.222  Sum_probs=42.2

Q ss_pred             CCCceEEeCCCCCCCc-cEEEEccCCCCCcccCCCeEEEeeCcc------EEEEeecccCCeeEEEEEEeee
Q psy14896        583 NWGKAMFCDPPTNYPG-VNYYWARDYFPNFVEEDKRVFVSYDGA------LYFSALEQIDAGNYSCNVQSKV  647 (813)
Q Consensus       583 g~~~~l~C~~~~~~p~-~~v~W~k~~~~~~~~~~~~~~~~~~~~------L~i~~~~~~d~G~Y~C~a~n~~  647 (813)
                      ...++|.|.+.+.+|. ..|+|.+||.+.............+|+      |.|..-...+...|+|.|.+..
T Consensus        19 ~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~~   90 (102)
T d1i1ca2          19 QSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEG   90 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeCC
Confidence            4568899999655665 689999999753221222223345565      4554444455668999999864

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.82  E-value=0.0014  Score=51.31  Aligned_cols=63  Identities=21%  Similarity=0.520  Sum_probs=44.0

Q ss_pred             cCCCCCCeEEEEEEecCCCC--CeEEEEeC--CcccC------CC-c---------eee------ecceEEEECCCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYPV--PSYNWTRR--GSPLP------RN-A---------YFE------NFNRILTIPNVKVED  735 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~--p~i~W~k~--g~~l~------~~-~---------~~~------~~~~~L~i~~v~~~d  735 (813)
                      ..++.|++++|+|.++|..-  -.+.|+|.  |+.|.      .+ .         ++.      .....|.|.+++.+|
T Consensus        10 ~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~eD   89 (117)
T d1c5db1          10 GLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTED   89 (117)
T ss_dssp             SEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccCc
Confidence            45788999999999998764  36889883  44331      11 1         111      112359999999999


Q ss_pred             CEEEEEEEE
Q psy14896        736 QGEYICRAS  744 (813)
Q Consensus       736 ~G~Y~C~a~  744 (813)
                      ++.|.|...
T Consensus        90 tAvYYCAr~   98 (117)
T d1c5db1          90 TAIYFCTRE   98 (117)
T ss_dssp             CEEEEEEEC
T ss_pred             ceEEEEecc
Confidence            999999653

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.0022  Score=48.69  Aligned_cols=75  Identities=13%  Similarity=0.136  Sum_probs=53.8

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEE-EeCCcccC-CCceee-ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNW-TRRGSPLP-RNAYFE-NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI  758 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W-~k~g~~l~-~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  758 (813)
                      +.+.+|+++.|.|.++ +|...++- .+++..+. .+..+. +...-++|.+++..|+|.|.|.|... |....+..|..
T Consensus        15 V~v~eg~~~vIPC~vT-~P~~~VtL~~~~~~~~~p~g~~v~~Dpk~Gf~I~~~~~~~~g~y~C~a~~~-g~~~~S~yl~~   92 (95)
T d1fltx_          15 IHMTEGRELVIPCRVT-SPNITVTLKKFPLDTLIPDGKRIIWDSRKGFIISNATYKEIGLLTCEATVN-GHLYKTNYLTH   92 (95)
T ss_dssp             EEECTTSCEEECCCBS-CTTSCCEEEETTTEEECCCSSSEEEETTTEEEESSCCGGGCEEEEEEEEET-TEEEEEEEEEE
T ss_pred             EEEeCCCCEEEEccCC-CCCceeEEEeccCCccCCCCCEEEECCCCCEEEeCCCcccCeEEEEEEEEC-CEEEEEEEEEE
Confidence            5678999999999997 67776644 44666554 333332 33456999999999999999999865 66555555544

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.82  E-value=0.0027  Score=51.49  Aligned_cols=75  Identities=23%  Similarity=0.391  Sum_probs=44.9

Q ss_pred             CceeecCCCccccccEEEEeeeccCC--CCeEEEeec--ccccccccc-------cccccCCCccEEee---C---CeEE
Q psy14896        197 TDVVFDLSKRSILNDITLSCYAGGYP--NPSYEWFKE--DYVQDRLVA-------NLIDPLSDKRFTLS---G---GNLI  259 (813)
Q Consensus       197 ~~~~v~~g~~~~g~~v~l~C~~~g~P--~p~v~W~k~--g~~l~~~~~-------~~~~~~~~~~~~~~---~---~~l~  259 (813)
                      ..+...+|     ++++|.|.++|..  ...+.|||.  |+.+..+..       .........|+...   .   ..|.
T Consensus         9 ~s~t~~~g-----~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~   83 (123)
T d1hxmb1           9 ISSTKTLS-----KTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLT   83 (123)
T ss_dssp             SEEEEETT-----CCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEE
T ss_pred             CeEEeCCC-----CCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeec
Confidence            34555555     7799999998743  447999985  333321110       01111223455543   1   1367


Q ss_pred             EcCCccccCCeeEEEEee
Q psy14896        260 INDPRQVEDRGSYHCKAS  277 (813)
Q Consensus       260 i~~~~~~~d~G~Y~C~a~  277 (813)
                      |.+. +.+|+|.|.|.+.
T Consensus        84 i~~l-~~~Dsa~YyCA~~  100 (123)
T d1hxmb1          84 IHNV-EKQDIATYYCALW  100 (123)
T ss_dssp             ECSC-CGGGCEEEEEEEE
T ss_pred             cccc-ccccCcEEEEeee
Confidence            7775 8999999999865

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.81  E-value=0.0021  Score=50.46  Aligned_cols=67  Identities=21%  Similarity=0.373  Sum_probs=39.7

Q ss_pred             cccEEEEeeeccC--CCCeEEEeec--cccccccc-------ccccccCCCccEEee----CC--eEEEcCCccccCCee
Q psy14896        209 LNDITLSCYAGGY--PNPSYEWFKE--DYVQDRLV-------ANLIDPLSDKRFTLS----GG--NLIINDPRQVEDRGS  271 (813)
Q Consensus       209 g~~v~l~C~~~g~--P~p~v~W~k~--g~~l~~~~-------~~~~~~~~~~~~~~~----~~--~l~i~~~~~~~d~G~  271 (813)
                      |++++|.|.++|.  ..-.+.|||.  |+.++-..       .....+.-..|+++.    ..  .|.|.+. +.+|++.
T Consensus        15 G~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l-~~eDtAv   93 (115)
T d1f3dh1          15 GASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSL-TFEDSAV   93 (115)
T ss_dssp             TCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSC-CGGGCEE
T ss_pred             CCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeec-CcCCcEE
Confidence            4889999999875  3446899985  33332110       011111122355543    12  2666675 8999999


Q ss_pred             EEEEe
Q psy14896        272 YHCKA  276 (813)
Q Consensus       272 Y~C~a  276 (813)
                      |.|..
T Consensus        94 YYCAr   98 (115)
T d1f3dh1          94 YYCAN   98 (115)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            99953

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.81  E-value=0.0013  Score=51.62  Aligned_cols=69  Identities=13%  Similarity=0.322  Sum_probs=42.7

Q ss_pred             cccEEEEeeeccCC--CCeEEEeec--ccccccc-------cccccccCCCccEEee----CC--eEEEcCCccccCCee
Q psy14896        209 LNDITLSCYAGGYP--NPSYEWFKE--DYVQDRL-------VANLIDPLSDKRFTLS----GG--NLIINDPRQVEDRGS  271 (813)
Q Consensus       209 g~~v~l~C~~~g~P--~p~v~W~k~--g~~l~~~-------~~~~~~~~~~~~~~~~----~~--~l~i~~~~~~~d~G~  271 (813)
                      |++|+|.|+++|..  .-.+.|+|.  |+.++=.       ......+....|+++.    ..  .|.|.+. +.+|++.
T Consensus        15 g~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L-~~eDtAv   93 (117)
T d1iqdb1          15 GASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSL-RSDDTAV   93 (117)
T ss_dssp             TCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC-CGGGCEE
T ss_pred             CCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeeccc-CcCcceE
Confidence            48899999999864  346899984  4433210       0112223334455543    12  2666665 8999999


Q ss_pred             EEEEeec
Q psy14896        272 YHCKASN  278 (813)
Q Consensus       272 Y~C~a~n  278 (813)
                      |.|....
T Consensus        94 YYCA~~~  100 (117)
T d1iqdb1          94 YYCAVPD  100 (117)
T ss_dssp             EEEEECS
T ss_pred             EEEeEcC
Confidence            9998654

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.79  E-value=0.00092  Score=52.64  Aligned_cols=62  Identities=23%  Similarity=0.485  Sum_probs=42.8

Q ss_pred             cCCCCCCeEEEEEEecCCCCC--eEEEEeC--Cccc------CCC--c---------eee------ecceEEEECCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYPVP--SYNWTRR--GSPL------PRN--A---------YFE------NFNRILTIPNVKVE  734 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p--~i~W~k~--g~~l------~~~--~---------~~~------~~~~~L~i~~v~~~  734 (813)
                      ..++.|++++|+|.++|+.-.  .+.|+|-  |+.|      ...  .         ++.      .....|.|.+++.+
T Consensus        10 ~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~~e   89 (119)
T d1eapb1          10 ELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLTSE   89 (119)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeecccCC
Confidence            456789999999999987633  6899973  3322      111  1         110      11235999999999


Q ss_pred             CCEEEEEEE
Q psy14896        735 DQGEYICRA  743 (813)
Q Consensus       735 d~G~Y~C~a  743 (813)
                      |++.|.|..
T Consensus        90 DTAvYYCAr   98 (119)
T d1eapb1          90 DSAVYFCKR   98 (119)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEEEE
Confidence            999999954

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.001  Score=51.24  Aligned_cols=66  Identities=20%  Similarity=0.461  Sum_probs=38.5

Q ss_pred             ccEEEEeeeccC-C-CCeEEEeecccccccccccc-cccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCc
Q psy14896        210 NDITLSCYAGGY-P-NPSYEWFKEDYVQDRLVANL-IDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKF  280 (813)
Q Consensus       210 ~~v~l~C~~~g~-P-~p~v~W~k~g~~l~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~  280 (813)
                      +.++|.|.+.|+ | ...|+|.+||+++....... .....+..+.. ...|.+.    ..+...|+|++....
T Consensus        16 ~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~-~s~l~v~----~~~~~~ytC~V~H~~   84 (95)
T d1k5na1          16 HEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQK-WAAVVVP----SGEEQRYTCHVQHEG   84 (95)
T ss_dssp             TEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEE-EEEEEEE----TTCGGGEEEEEECTT
T ss_pred             CCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEE-EEEEEEE----cCCCCEEEEEEEECc
Confidence            459999999984 4 44899999998775432111 11122222221 1123332    344567999999753

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.78  E-value=0.0018  Score=51.78  Aligned_cols=79  Identities=16%  Similarity=0.251  Sum_probs=44.7

Q ss_pred             eCCCceeecCCCccccccEEEEeeeccCCCCeEEEeeccc--cccccc-----ccccccCCCccEEe-----eCCeEEEc
Q psy14896        194 KQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDY--VQDRLV-----ANLIDPLSDKRFTL-----SGGNLIIN  261 (813)
Q Consensus       194 ~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~--~l~~~~-----~~~~~~~~~~~~~~-----~~~~l~i~  261 (813)
                      ..|...++.+|     ++++|.|.... -...+.|||...  .+.-..     ..........+...     ...+|.|.
T Consensus         3 QsP~~~~~~~G-----~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~   76 (112)
T d2cdeb1           3 QTPRYLVIGTG-----KKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLE   76 (112)
T ss_dssp             EECSEEEEETT-----CCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBS
T ss_pred             ECCCEEEECCC-----CCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeec
Confidence            34666777666     67999999753 345799998532  111000     00000111111111     12346666


Q ss_pred             CCccccCCeeEEEEeecC
Q psy14896        262 DPRQVEDRGSYHCKASNK  279 (813)
Q Consensus       262 ~~~~~~d~G~Y~C~a~n~  279 (813)
                      +. +.+|+|.|.|.+...
T Consensus        77 ~~-~~~Dsa~YyCA~~~~   93 (112)
T d2cdeb1          77 SA-RPSHTSQYLCASSEN   93 (112)
T ss_dssp             SC-CTTTCSEEEEEEECS
T ss_pred             cc-cccccccEEEEEecC
Confidence            64 899999999988744

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.78  E-value=0.0015  Score=49.72  Aligned_cols=65  Identities=18%  Similarity=0.327  Sum_probs=39.9

Q ss_pred             ccEEEEeeecc-CCC-CeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCc
Q psy14896        210 NDITLSCYAGG-YPN-PSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKF  280 (813)
Q Consensus       210 ~~v~l~C~~~g-~P~-p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~  280 (813)
                      +.++|.|.+.| .|. ..|+|.+||.++..... ......+..|.... .|.+.    .+|...|+|++....
T Consensus        16 ~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~~-~~~~~~dgty~~~S-~l~v~----~~~~~~ytC~V~H~s   82 (91)
T d3frua1          16 GSSVLTCAAFSFYPPELKFRFLRNGLASGSGNC-STGPNGDGSFHAWS-LLEVK----RGDEHHYQCQVEHEG   82 (91)
T ss_dssp             TEEEEEEEEEEEBSSCCEEEEEETTEECCCCEE-EEEECSSSCEEEEE-EEEEE----TTCGGGEEEEEECTT
T ss_pred             CCEEEEEEEEeEECCCCEEEEEECCEeCCccCc-cceecCCCCEeEEE-EEEEC----CCCCCEEEEEEEeCC
Confidence            45999999998 465 49999999987643221 11222333332211 23332    345678999999764

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.77  E-value=0.0022  Score=51.28  Aligned_cols=80  Identities=13%  Similarity=0.270  Sum_probs=47.7

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeec--cccccccccc------ccccCCCccEEe---eCCeEEE
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKE--DYVQDRLVAN------LIDPLSDKRFTL---SGGNLII  260 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~--g~~l~~~~~~------~~~~~~~~~~~~---~~~~l~i  260 (813)
                      +...|...++.+|     ++++|.|...+.-...+.|||.  |+.+.-....      ........++..   .+.+|.|
T Consensus         4 V~Q~P~~~~~~~G-----~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l   78 (112)
T d1fo0b_           4 LEQNPRWRLVPRG-----QAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRL   78 (112)
T ss_dssp             EEEECSEEECCTT-----CCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEE
T ss_pred             EEeCCCeEEECCC-----CCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEE
Confidence            4555777777666     7799999986544568999997  3333211100      000011222222   2345666


Q ss_pred             cCCccccCCeeEEEEee
Q psy14896        261 NDPRQVEDRGSYHCKAS  277 (813)
Q Consensus       261 ~~~~~~~d~G~Y~C~a~  277 (813)
                      ... +.+|++.|.|.+.
T Consensus        79 ~~~-~~~dsa~Y~Ca~~   94 (112)
T d1fo0b_          79 QVA-NMSQGRTLYCTCS   94 (112)
T ss_dssp             EEE-SCCSCEEEEEEEE
T ss_pred             ecC-CccCCccEEEEEe
Confidence            654 7899999999865

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.77  E-value=0.00064  Score=51.86  Aligned_cols=57  Identities=19%  Similarity=0.419  Sum_probs=39.4

Q ss_pred             CCeEEEEEEecCC-CC-CeEEEEeCCcccCCCcee--e------ecceEEEECCCCCCCCEEEEEEEEcC
Q psy14896        687 GDKVRLECVAFGY-PV-PSYNWTRRGSPLPRNAYF--E------NFNRILTIPNVKVEDQGEYICRASND  746 (813)
Q Consensus       687 G~~v~l~C~~~g~-P~-p~i~W~k~g~~l~~~~~~--~------~~~~~L~i~~v~~~d~G~Y~C~a~N~  746 (813)
                      +..++|.|.+.|+ |. ..|+|++||..+......  .      ...+.|.|.   .+|...|+|++...
T Consensus        15 ~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~dgty~~~S~l~v~---~~~~~~ytC~V~H~   81 (91)
T d3frua1          15 SGSSVLTCAAFSFYPPELKFRFLRNGLASGSGNCSTGPNGDGSFHAWSLLEVK---RGDEHHYQCQVEHE   81 (91)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECCCCEEEEEECSSSCEEEEEEEEEE---TTCGGGEEEEEECT
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEECCEeCCccCccceecCCCCEeEEEEEEEC---CCCCCEEEEEEEeC
Confidence            4588999999985 54 489999999887654311  0      112346664   34556899999875

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=96.76  E-value=0.0019  Score=50.63  Aligned_cols=64  Identities=19%  Similarity=0.331  Sum_probs=44.2

Q ss_pred             cCCCCCCeEEEEEEecCCCC--CeEEEEeC--Cccc------CC-Cc---------ee--e----ecceEEEECCCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYPV--PSYNWTRR--GSPL------PR-NA---------YF--E----NFNRILTIPNVKVED  735 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~--p~i~W~k~--g~~l------~~-~~---------~~--~----~~~~~L~i~~v~~~d  735 (813)
                      ..++.|++++|+|.++|+.-  -.+.|+|-  |+.+      .. +.         ++  .    .....|.|.+++.+|
T Consensus        10 ~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~eD   89 (116)
T d7fabh1          10 GLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAAD   89 (116)
T ss_dssp             SEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             ceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhcccccccccc
Confidence            45688999999999998764  36889983  4322      11 10         11  1    112359999999999


Q ss_pred             CEEEEEEEEc
Q psy14896        736 QGEYICRASN  745 (813)
Q Consensus       736 ~G~Y~C~a~N  745 (813)
                      ++.|.|....
T Consensus        90 tAvYyCAr~~   99 (116)
T d7fabh1          90 TAVYYCARNL   99 (116)
T ss_dssp             CEEEEEEEEC
T ss_pred             ceEEEeeeec
Confidence            9999997643

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.75  E-value=0.0043  Score=49.60  Aligned_cols=80  Identities=14%  Similarity=0.232  Sum_probs=46.5

Q ss_pred             eeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecc--cccccccc-----cccccCCCccEEee-----CCeEE
Q psy14896        192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKED--YVQDRLVA-----NLIDPLSDKRFTLS-----GGNLI  259 (813)
Q Consensus       192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g--~~l~~~~~-----~~~~~~~~~~~~~~-----~~~l~  259 (813)
                      ++..|..+.+.+|     ++|+|.|.... -...+.|||..  +.+.-...     .........++...     ..+|.
T Consensus         3 V~QsP~~~~~~~G-----~~v~l~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~   76 (113)
T d1j8he1           3 VTQSSRYLVKRTG-----EKVFLECVQDM-DHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLI   76 (113)
T ss_dssp             EEESCSEEEEETT-----CCEEECEEESS-CCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEE
T ss_pred             EEccCCEEEECCC-----CCEEEEEEEcC-CccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeE
Confidence            4455777777777     67999998743 34579999853  22211100     00011111222221     23477


Q ss_pred             EcCCccccCCeeEEEEeec
Q psy14896        260 INDPRQVEDRGSYHCKASN  278 (813)
Q Consensus       260 i~~~~~~~d~G~Y~C~a~n  278 (813)
                      |.+. +.+|+|.|.|.+..
T Consensus        77 i~~~-~~~Dsa~YyCa~~~   94 (113)
T d1j8he1          77 LESA-STNQTSMYLCASSS   94 (113)
T ss_dssp             ESSC-CGGGCEEEEEEEEC
T ss_pred             eccC-ccCCcccEEeeEcc
Confidence            7775 89999999998864

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=96.75  E-value=0.00084  Score=51.93  Aligned_cols=62  Identities=15%  Similarity=0.218  Sum_probs=37.6

Q ss_pred             CCCCeEEEEEEecCCCC--CeEEEEeCCcccCCCcee----eecce---EEEECCCCCCCCEEEEEEEEcC
Q psy14896        685 KAGDKVRLECVAFGYPV--PSYNWTRRGSPLPRNAYF----ENFNR---ILTIPNVKVEDQGEYICRASND  746 (813)
Q Consensus       685 ~~G~~v~l~C~~~g~P~--p~i~W~k~g~~l~~~~~~----~~~~~---~L~i~~v~~~d~G~Y~C~a~N~  746 (813)
                      ..|+.++|.|.+.|+-+  ..|+|++||.++..+...    ...++   ....-.+..++...|+|++...
T Consensus        14 ~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~   84 (97)
T d1uvqb1          14 ALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHP   84 (97)
T ss_dssp             -----CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCSCTTCCEEEEEECT
T ss_pred             cCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCCCCCCEEEEEEEeC
Confidence            34677799999998643  489999999887654321    11111   1222233566677999999876

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00016  Score=57.15  Aligned_cols=66  Identities=17%  Similarity=0.266  Sum_probs=41.0

Q ss_pred             cCCCceEEeCCCCCCCc-cEEEEccCCCCCcccCCCeEEEeeCcc------EEEEeecccCCeeEEEEEEeee
Q psy14896        582 QNWGKAMFCDPPTNYPG-VNYYWARDYFPNFVEEDKRVFVSYDGA------LYFSALEQIDAGNYSCNVQSKV  647 (813)
Q Consensus       582 ~g~~~~l~C~~~~~~p~-~~v~W~k~~~~~~~~~~~~~~~~~~~~------L~i~~~~~~d~G~Y~C~a~n~~  647 (813)
                      .+..++|.|.+.+-+|. ..|+|++||.+.............+|+      |.|..-.....-.|+|.|.+..
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~   90 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA   90 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            35668999999544564 689999998652211111223344565      4444433344567999999865

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.73  E-value=0.00021  Score=56.11  Aligned_cols=65  Identities=14%  Similarity=0.231  Sum_probs=40.8

Q ss_pred             CCCceEEeCCCCCCCc-cEEEEccCCCCCcccCCCeEEEeeCcc------EEEEeecccCCeeEEEEEEeee
Q psy14896        583 NWGKAMFCDPPTNYPG-VNYYWARDYFPNFVEEDKRVFVSYDGA------LYFSALEQIDAGNYSCNVQSKV  647 (813)
Q Consensus       583 g~~~~l~C~~~~~~p~-~~v~W~k~~~~~~~~~~~~~~~~~~~~------L~i~~~~~~d~G~Y~C~a~n~~  647 (813)
                      ...++|.|.+.+-+|. ..|+|++||.+.............+|+      |.|..-.......|+|++.+..
T Consensus        18 ~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   89 (101)
T d1cqka_          18 KDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEG   89 (101)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            4567999999544564 789999999753221111223445665      4444333345678999999864

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.72  E-value=0.001  Score=52.64  Aligned_cols=72  Identities=7%  Similarity=0.154  Sum_probs=43.0

Q ss_pred             ceeccCCCceEEeCCCCCCCc-cEEEEccCCCCCcccCCCeEEEeeCccE---EEEeecccCC-eeEEEEEEeeecC
Q psy14896        578 EIGNQNWGKAMFCDPPTNYPG-VNYYWARDYFPNFVEEDKRVFVSYDGAL---YFSALEQIDA-GNYSCNVQSKVSD  649 (813)
Q Consensus       578 ~~~~~g~~~~l~C~~~~~~p~-~~v~W~k~~~~~~~~~~~~~~~~~~~~L---~i~~~~~~d~-G~Y~C~a~n~~g~  649 (813)
                      .....+..++|.|.+.+.+|. ..|+|++||...............+|++   ....+..+|- ..|+|.+.+..+.
T Consensus        19 ~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w~~~ytC~V~H~s~~   95 (107)
T d1hxmb2          19 AETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSLDKEHRCIVRHENNK   95 (107)
T ss_dssp             GGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGGGSCEEEEEEETTSG
T ss_pred             HHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEecccCCCeEEEEEEECCCC
Confidence            334556788999999655665 5799999987643221111122344542   1223344442 3699999997654

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.71  E-value=0.0012  Score=51.77  Aligned_cols=65  Identities=22%  Similarity=0.500  Sum_probs=44.5

Q ss_pred             cCCCCCCeEEEEEEecCCCC--CeEEEEe--CCccc------C-CC-c---------ee--ee----cceEEEECCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYPV--PSYNWTR--RGSPL------P-RN-A---------YF--EN----FNRILTIPNVKVE  734 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~--p~i~W~k--~g~~l------~-~~-~---------~~--~~----~~~~L~i~~v~~~  734 (813)
                      ..++.|++++|+|.++|+.-  -.+.|+|  .|+.+      . .+ .         ++  ..    ....|.|.+++.+
T Consensus        10 ~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~e   89 (117)
T d1iqdb1          10 EVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRSD   89 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCcC
Confidence            45688999999999998753  3688988  34332      1 11 1         11  11    1125999999999


Q ss_pred             CCEEEEEEEEcC
Q psy14896        735 DQGEYICRASND  746 (813)
Q Consensus       735 d~G~Y~C~a~N~  746 (813)
                      |++.|.|.....
T Consensus        90 DtAvYYCA~~~~  101 (117)
T d1iqdb1          90 DTAVYYCAVPDP  101 (117)
T ss_dssp             GCEEEEEEECSS
T ss_pred             cceEEEEeEcCC
Confidence            999999987543

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.70  E-value=0.0014  Score=51.36  Aligned_cols=64  Identities=19%  Similarity=0.455  Sum_probs=44.0

Q ss_pred             cCCCCCCeEEEEEEecCCCC--CeEEEEe--CCcccC------CCc----------ee--ee----cceEEEECCCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYPV--PSYNWTR--RGSPLP------RNA----------YF--EN----FNRILTIPNVKVED  735 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~--p~i~W~k--~g~~l~------~~~----------~~--~~----~~~~L~i~~v~~~d  735 (813)
                      ..++.|++++|+|.++|..-  -.+.|+|  .|+.+.      .+.          ++  ..    ..-.|.|.+++.+|
T Consensus        10 ~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eD   89 (116)
T d1fn4b1          10 GLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDD   89 (116)
T ss_dssp             SBCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCCCC
T ss_pred             ceECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCCCC
Confidence            45788999999999998763  3688998  344321      111          11  11    11248899999999


Q ss_pred             CEEEEEEEEc
Q psy14896        736 QGEYICRASN  745 (813)
Q Consensus       736 ~G~Y~C~a~N  745 (813)
                      ++.|.|....
T Consensus        90 TAvYyCAr~~   99 (116)
T d1fn4b1          90 TGTYYCTRDL   99 (116)
T ss_dssp             CEEEEEEEEC
T ss_pred             CEEEEEEeec
Confidence            9999996543

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.70  E-value=0.00097  Score=52.15  Aligned_cols=64  Identities=23%  Similarity=0.543  Sum_probs=44.0

Q ss_pred             cCCCCCCeEEEEEEecCCCC--CeEEEEeC--Cccc------C-CC-c-ee----------e----ecceEEEECCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYPV--PSYNWTRR--GSPL------P-RN-A-YF----------E----NFNRILTIPNVKVE  734 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~--p~i~W~k~--g~~l------~-~~-~-~~----------~----~~~~~L~i~~v~~~  734 (813)
                      ..++.|++++|+|.++|..-  -.+.|+|.  |+.|      . .+ . .+          .    .....|.|.+++.+
T Consensus        10 ~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~e   89 (117)
T d1jpth1          10 GLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRAE   89 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCCC
Confidence            45788999999999998763  37899873  3322      1 11 1 11          1    11234999999999


Q ss_pred             CCEEEEEEEEc
Q psy14896        735 DQGEYICRASN  745 (813)
Q Consensus       735 d~G~Y~C~a~N  745 (813)
                      |++.|.|....
T Consensus        90 DTAvYYCAr~~  100 (117)
T d1jpth1          90 DTAVYYCARDT  100 (117)
T ss_dssp             GCEEEEEEEEC
T ss_pred             CceEEEEeecC
Confidence            99999996543

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=96.69  E-value=0.0012  Score=52.30  Aligned_cols=63  Identities=21%  Similarity=0.459  Sum_probs=42.9

Q ss_pred             cCCCCCCeEEEEEEecCCCC----CeEEEEeC--CcccC------C-Cc---------eee--e----cceEEEECCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYPV----PSYNWTRR--GSPLP------R-NA---------YFE--N----FNRILTIPNVKV  733 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~----p~i~W~k~--g~~l~------~-~~---------~~~--~----~~~~L~i~~v~~  733 (813)
                      ..++.|++++|+|.++|...    -.+.|+|.  |+.|.      . +.         ++.  .    ..-.|.|.+++.
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~~   89 (120)
T d1ai1h1          10 AVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVTN   89 (120)
T ss_dssp             SEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCCG
T ss_pred             ceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeeec
Confidence            45688999999999998652    25789873  44321      1 11         111  1    113499999999


Q ss_pred             CCCEEEEEEEE
Q psy14896        734 EDQGEYICRAS  744 (813)
Q Consensus       734 ~d~G~Y~C~a~  744 (813)
                      +|++.|.|...
T Consensus        90 eDtAvYYCAr~  100 (120)
T d1ai1h1          90 EDTAMYYCSRE  100 (120)
T ss_dssp             GGCEEEEEEEE
T ss_pred             cceeEEEEEec
Confidence            99999999654

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.68  E-value=0.0022  Score=51.01  Aligned_cols=64  Identities=30%  Similarity=0.497  Sum_probs=44.5

Q ss_pred             cCCCCCCeEEEEEEecCCCCC--eEEEEeC--Cccc-------CCC-c---------ee--ee----cceEEEECCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYPVP--SYNWTRR--GSPL-------PRN-A---------YF--EN----FNRILTIPNVKVE  734 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p--~i~W~k~--g~~l-------~~~-~---------~~--~~----~~~~L~i~~v~~~  734 (813)
                      ..++.|++++|+|.++|..-.  .+.|+|.  |+.|       ..+ .         ++  ..    ..-.|.|.+++.+
T Consensus         9 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~e   88 (124)
T d1zvya1           9 GSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSE   88 (124)
T ss_dssp             EECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccCC
Confidence            457889999999999986643  6899983  3322       111 1         11  11    1134999999999


Q ss_pred             CCEEEEEEEEc
Q psy14896        735 DQGEYICRASN  745 (813)
Q Consensus       735 d~G~Y~C~a~N  745 (813)
                      |++.|.|....
T Consensus        89 DtAvYYCAr~~   99 (124)
T d1zvya1          89 DTAIYTCGATR   99 (124)
T ss_dssp             GCEEEEEEECS
T ss_pred             cceEEEEeecc
Confidence            99999998754

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=96.65  E-value=0.0017  Score=50.88  Aligned_cols=64  Identities=17%  Similarity=0.425  Sum_probs=43.9

Q ss_pred             cCCCCCCeEEEEEEecCCCC--CeEEEEeC--Cccc------CC-Cc---------eee--e----cceEEEECCCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYPV--PSYNWTRR--GSPL------PR-NA---------YFE--N----FNRILTIPNVKVED  735 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~--p~i~W~k~--g~~l------~~-~~---------~~~--~----~~~~L~i~~v~~~d  735 (813)
                      ..++.|++++|+|.++|+.-  -.+.|+|.  |+.|      .. +.         ++.  .    ..-.|.|.+++.+|
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~eD   89 (116)
T d1a2yb_          10 GLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDD   89 (116)
T ss_dssp             SEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeecc
Confidence            45688999999999998753  36889883  3332      11 11         111  1    11259999999999


Q ss_pred             CEEEEEEEEc
Q psy14896        736 QGEYICRASN  745 (813)
Q Consensus       736 ~G~Y~C~a~N  745 (813)
                      ++.|.|.-..
T Consensus        90 TAvYYCAr~~   99 (116)
T d1a2yb_          90 TARYYCARER   99 (116)
T ss_dssp             CEEEEEEEES
T ss_pred             ceEEEEEEeC
Confidence            9999997543

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.64  E-value=0.0014  Score=50.51  Aligned_cols=62  Identities=24%  Similarity=0.441  Sum_probs=40.9

Q ss_pred             cCCCCCCeEEEEEEecCCC--CCeEEEEeC--Cccc------CCCc----------ee--ee----cceEEEECCCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYP--VPSYNWTRR--GSPL------PRNA----------YF--EN----FNRILTIPNVKVED  735 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P--~p~i~W~k~--g~~l------~~~~----------~~--~~----~~~~L~i~~v~~~d  735 (813)
                      ..++.|++++|+|.++|.-  .-.+.|+|.  |+.|      ..+.          ++  ..    ....|.|.+++.+|
T Consensus         3 ~lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eD   82 (107)
T d1sjva_           3 GLVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPED   82 (107)
T ss_dssp             CCCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGG
T ss_pred             CEecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCccc
Confidence            3567899999999999854  336889884  3322      1110          11  11    12359999999999


Q ss_pred             CEEEEEEE
Q psy14896        736 QGEYICRA  743 (813)
Q Consensus       736 ~G~Y~C~a  743 (813)
                      ++.|.|..
T Consensus        83 tAvYyCA~   90 (107)
T d1sjva_          83 TAVYYCYT   90 (107)
T ss_dssp             CSEEEEEE
T ss_pred             ceeeeEec
Confidence            99999964

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.004  Score=47.25  Aligned_cols=69  Identities=17%  Similarity=0.258  Sum_probs=47.0

Q ss_pred             CCceeecCCCccccccEEEEeeeccCCCCeEEEee-cccccccccccccccCCCccEEeeCC-eEEEcCCccccCCeeEE
Q psy14896        196 PTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFK-EDYVQDRLVANLIDPLSDKRFTLSGG-NLIINDPRQVEDRGSYH  273 (813)
Q Consensus       196 p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k-~g~~l~~~~~~~~~~~~~~~~~~~~~-~l~i~~~~~~~d~G~Y~  273 (813)
                      |.-+.+.+|     +++.+.|.++. |..++.-++ ++..+         ...+..+..+.. -++|.+. +..|+|.|.
T Consensus        12 p~~V~v~eg-----~~~vIPC~vT~-P~~~VtL~~~~~~~~---------~p~g~~v~~Dpk~Gf~I~~~-~~~~~g~y~   75 (95)
T d1fltx_          12 PEIIHMTEG-----RELVIPCRVTS-PNITVTLKKFPLDTL---------IPDGKRIIWDSRKGFIISNA-TYKEIGLLT   75 (95)
T ss_dssp             CEEEEECTT-----SCEEECCCBSC-TTSCCEEEETTTEEE---------CCCSSSEEEETTTEEEESSC-CGGGCEEEE
T ss_pred             CCEEEEeCC-----CCEEEEccCCC-CCceeEEEeccCCcc---------CCCCCEEEECCCCCEEEeCC-CcccCeEEE
Confidence            444556555     77999999986 888876554 55543         233445555533 3677775 899999999


Q ss_pred             EEeecCc
Q psy14896        274 CKASNKF  280 (813)
Q Consensus       274 C~a~n~~  280 (813)
                      |.|....
T Consensus        76 C~a~~~g   82 (95)
T d1fltx_          76 CEATVNG   82 (95)
T ss_dssp             EEEEETT
T ss_pred             EEEEECC
Confidence            9998553

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.62  E-value=0.0021  Score=50.28  Aligned_cols=63  Identities=25%  Similarity=0.471  Sum_probs=43.1

Q ss_pred             cCCCCCCeEEEEEEecCCCCC--eEEEEeC--Cccc------C-CC----------ceee--e----cceEEEECCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYPVP--SYNWTRR--GSPL------P-RN----------AYFE--N----FNRILTIPNVKVE  734 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p--~i~W~k~--g~~l------~-~~----------~~~~--~----~~~~L~i~~v~~~  734 (813)
                      ..++.|++++|+|.++|..-.  .+.|+|-  |+.+      . .+          .++.  .    ....|.|.+++.+
T Consensus        10 ~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~~e   89 (117)
T d1jnhb1          10 ELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTSE   89 (117)
T ss_dssp             EECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccCCC
Confidence            456889999999999987543  6899882  3322      1 11          0111  1    1135999999999


Q ss_pred             CCEEEEEEEE
Q psy14896        735 DQGEYICRAS  744 (813)
Q Consensus       735 d~G~Y~C~a~  744 (813)
                      |++.|.|...
T Consensus        90 DTAvYYCAr~   99 (117)
T d1jnhb1          90 DSAVYSCSRG   99 (117)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEeec
Confidence            9999999653

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.60  E-value=0.0039  Score=47.90  Aligned_cols=69  Identities=20%  Similarity=0.272  Sum_probs=39.2

Q ss_pred             cccEEEEeeeccCCC--CeEEEeec--cccccccc-------ccccccCCCccEEeeC----C--eEEEcCCccccCCee
Q psy14896        209 LNDITLSCYAGGYPN--PSYEWFKE--DYVQDRLV-------ANLIDPLSDKRFTLSG----G--NLIINDPRQVEDRGS  271 (813)
Q Consensus       209 g~~v~l~C~~~g~P~--p~v~W~k~--g~~l~~~~-------~~~~~~~~~~~~~~~~----~--~l~i~~~~~~~d~G~  271 (813)
                      |++++|.|+++|...  --+.|+|.  |+.++=..       .....+.-..|+++..    .  .|.|.+. +.+|++.
T Consensus         2 G~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL-~~eDTAv   80 (103)
T d1oari_           2 GASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSL-TSEDSAV   80 (103)
T ss_dssp             CCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC----CCSE
T ss_pred             CCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeec-cccccEE
Confidence            688999999998643  36999975  34332110       1122233445666541    1  3666665 8999999


Q ss_pred             EEEEeec
Q psy14896        272 YHCKASN  278 (813)
Q Consensus       272 Y~C~a~n  278 (813)
                      |.|....
T Consensus        81 YYCAr~~   87 (103)
T d1oari_          81 YYCARMW   87 (103)
T ss_dssp             EEEEEEE
T ss_pred             EEeEEEC
Confidence            9997543

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.59  E-value=0.0017  Score=50.96  Aligned_cols=63  Identities=25%  Similarity=0.486  Sum_probs=43.7

Q ss_pred             cCCCCCCeEEEEEEecCCCCC--eEEEEeC--Cccc------C-CC-c---------eee------ecceEEEECCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYPVP--SYNWTRR--GSPL------P-RN-A---------YFE------NFNRILTIPNVKVE  734 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p--~i~W~k~--g~~l------~-~~-~---------~~~------~~~~~L~i~~v~~~  734 (813)
                      ..++.|++++|+|.++|..-.  .+.|+|.  |+.|      . .+ .         ++.      .....|.|.+++.+
T Consensus         9 ~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~~e   88 (117)
T d1um5h1           9 VLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLTSE   88 (117)
T ss_dssp             EEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccCCC
Confidence            557889999999999987643  6899883  3322      1 11 1         111      11125999999999


Q ss_pred             CCEEEEEEEE
Q psy14896        735 DQGEYICRAS  744 (813)
Q Consensus       735 d~G~Y~C~a~  744 (813)
                      |++.|.|...
T Consensus        89 DtAvYYCAr~   98 (117)
T d1um5h1          89 DSAVYYCARS   98 (117)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEeec
Confidence            9999999653

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.58  E-value=0.0022  Score=50.63  Aligned_cols=63  Identities=25%  Similarity=0.545  Sum_probs=43.8

Q ss_pred             cCCCCCCeEEEEEEecCCCC--CeEEEEeC--Cccc------CC--Cc---------ee--ee----cceEEEECCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYPV--PSYNWTRR--GSPL------PR--NA---------YF--EN----FNRILTIPNVKVE  734 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~--p~i~W~k~--g~~l------~~--~~---------~~--~~----~~~~L~i~~v~~~  734 (813)
                      ..++.|++++|+|.++|..-  -.+.|+|.  |+.|      ..  +.         ++  ..    ..-.|.|.+++.+
T Consensus        11 ~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L~~e   90 (122)
T d1vgeh1          11 EVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRPE   90 (122)
T ss_dssp             EEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccccCCC
Confidence            56789999999999998763  36899883  3322      11  11         11  11    1124999999999


Q ss_pred             CCEEEEEEEE
Q psy14896        735 DQGEYICRAS  744 (813)
Q Consensus       735 d~G~Y~C~a~  744 (813)
                      |++.|.|...
T Consensus        91 DtA~YYCAr~  100 (122)
T d1vgeh1          91 DTAVYYCARD  100 (122)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEeec
Confidence            9999999765

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.56  E-value=0.0013  Score=51.43  Aligned_cols=61  Identities=33%  Similarity=0.614  Sum_probs=41.9

Q ss_pred             cCCCCCCeEEEEEEecCCCC--CeEEEEeC--Cccc------CC-C-c---------eee------ecceEEEECCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYPV--PSYNWTRR--GSPL------PR-N-A---------YFE------NFNRILTIPNVKVE  734 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~--p~i~W~k~--g~~l------~~-~-~---------~~~------~~~~~L~i~~v~~~  734 (813)
                      ..++.|++++|+|.+.|+.-  -.+.|+|.  |+.|      .. + .         ++.      ...-.|.|.+++.+
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~~e   89 (118)
T d1nlbh1          10 ELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLKNE   89 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeecccC
Confidence            45688999999999998653  36889873  3322      11 1 1         111      01124999999999


Q ss_pred             CCEEEEEE
Q psy14896        735 DQGEYICR  742 (813)
Q Consensus       735 d~G~Y~C~  742 (813)
                      |++.|.|.
T Consensus        90 DtAvYYCA   97 (118)
T d1nlbh1          90 DTATYFCA   97 (118)
T ss_dssp             GCEEEEEE
T ss_pred             cceEEEEe
Confidence            99999994

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=96.55  E-value=0.0017  Score=51.14  Aligned_cols=63  Identities=25%  Similarity=0.520  Sum_probs=43.3

Q ss_pred             cCCCCCCeEEEEEEecCCCCC---eEEEEe--CCcccC------C-Cc---------eee------ecceEEEECCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYPVP---SYNWTR--RGSPLP------R-NA---------YFE------NFNRILTIPNVKVE  734 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p---~i~W~k--~g~~l~------~-~~---------~~~------~~~~~L~i~~v~~~  734 (813)
                      ..++.|++++|+|.++|..-.   .+.|+|  .|+.|.      . +.         ++.      .....|.|.+++.+
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~e   89 (119)
T d1ncwh1          10 GLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTTE   89 (119)
T ss_dssp             SEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccccccC
Confidence            457889999999999997643   478987  344321      1 11         111      11135999999999


Q ss_pred             CCEEEEEEEE
Q psy14896        735 DQGEYICRAS  744 (813)
Q Consensus       735 d~G~Y~C~a~  744 (813)
                      |++.|.|...
T Consensus        90 DTAvYYCAr~   99 (119)
T d1ncwh1          90 DTATYYCAGL   99 (119)
T ss_dssp             GCEEEEEEEE
T ss_pred             CceEEEEeEe
Confidence            9999999643

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.55  E-value=0.0018  Score=51.21  Aligned_cols=62  Identities=19%  Similarity=0.381  Sum_probs=43.0

Q ss_pred             CCeEEEEEEecCC-CC-CeEEEEeCCcccCCCcee-----eec------ceEEEECCCCCCCCEEEEEEEEcCCC
Q psy14896        687 GDKVRLECVAFGY-PV-PSYNWTRRGSPLPRNAYF-----ENF------NRILTIPNVKVEDQGEYICRASNDRS  748 (813)
Q Consensus       687 G~~v~l~C~~~g~-P~-p~i~W~k~g~~l~~~~~~-----~~~------~~~L~i~~v~~~d~G~Y~C~a~N~~G  748 (813)
                      ++.++|.|.+.|+ |. ..|+|++||..+..+...     ...      .+.|.|..-.......|+|++.....
T Consensus        20 ~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~~   94 (107)
T d1mjul2          20 SGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS   94 (107)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTC
T ss_pred             CCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCC
Confidence            5689999999975 44 489999999987654211     111      23577766555556789999997643

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.54  E-value=0.0026  Score=48.86  Aligned_cols=62  Identities=24%  Similarity=0.457  Sum_probs=37.8

Q ss_pred             CCCeEEEEEEecCCCCC--eEEEEeC--Cccc------CCC-----------ceee------ecceEEEECCCCCCCCEE
Q psy14896        686 AGDKVRLECVAFGYPVP--SYNWTRR--GSPL------PRN-----------AYFE------NFNRILTIPNVKVEDQGE  738 (813)
Q Consensus       686 ~G~~v~l~C~~~g~P~p--~i~W~k~--g~~l------~~~-----------~~~~------~~~~~L~i~~v~~~d~G~  738 (813)
                      .|++++|+|.++|..-.  .+.|+|-  |+.+      ..+           .++.      .....|.|.+++.+|++.
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv   80 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV   80 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence            48999999999987543  6899973  4432      111           1111      112359999999999999


Q ss_pred             EEEEEEcCC
Q psy14896        739 YICRASNDR  747 (813)
Q Consensus       739 Y~C~a~N~~  747 (813)
                      |.|......
T Consensus        81 YYCAr~~~~   89 (103)
T d1oari_          81 YYCARMWYY   89 (103)
T ss_dssp             EEEEEEECS
T ss_pred             EEeEEECCC
Confidence            999765443

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=96.54  E-value=0.004  Score=50.19  Aligned_cols=76  Identities=16%  Similarity=0.214  Sum_probs=43.8

Q ss_pred             CCceeecCCCccccccEEEEeeeccCC--CCeEEEeecc--cccccccc------cccccCCCccEEee---CC---eEE
Q psy14896        196 PTDVVFDLSKRSILNDITLSCYAGGYP--NPSYEWFKED--YVQDRLVA------NLIDPLSDKRFTLS---GG---NLI  259 (813)
Q Consensus       196 p~~~~v~~g~~~~g~~v~l~C~~~g~P--~p~v~W~k~g--~~l~~~~~------~~~~~~~~~~~~~~---~~---~l~  259 (813)
                      |..+...+|     ++|+|.|.+.+..  ...+.|||..  +.+..+..      .........++...   ..   .|.
T Consensus         8 ~~sv~~~~G-----~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~   82 (120)
T d1ypzf1           8 EISISRPRD-----ETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILT   82 (120)
T ss_dssp             CSEEEEETT-----SCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEE
T ss_pred             CCEEEecCC-----CcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeecccccccccccccccccccc
Confidence            345665566     7799999986532  3569999953  22211110      00111122344432   11   367


Q ss_pred             EcCCccccCCeeEEEEee
Q psy14896        260 INDPRQVEDRGSYHCKAS  277 (813)
Q Consensus       260 i~~~~~~~d~G~Y~C~a~  277 (813)
                      |.+. +.+|+|.|.|.+.
T Consensus        83 I~~l-~~~Dsa~YyCA~~   99 (120)
T d1ypzf1          83 IYSL-EEEDEAIYYCSYG   99 (120)
T ss_dssp             ECSC-CGGGCSEEEEEEC
T ss_pred             cccc-ccccceeEEEEEc
Confidence            7775 8999999999765

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.52  E-value=0.0024  Score=50.58  Aligned_cols=63  Identities=27%  Similarity=0.510  Sum_probs=43.5

Q ss_pred             cCCCCCCeEEEEEEecCCCC--CeEEEEeC--CcccC-------CC-c---------eee--e----cceEEEECCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYPV--PSYNWTRR--GSPLP-------RN-A---------YFE--N----FNRILTIPNVKVE  734 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~--p~i~W~k~--g~~l~-------~~-~---------~~~--~----~~~~L~i~~v~~~  734 (813)
                      ..++.|++++|+|.++|..-  -.+.|+|.  |+.+.       .+ .         ++.  .    ..-.|.|.+++.+
T Consensus        10 ~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~e   89 (120)
T d1pg7x1          10 ELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTSN   89 (120)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCCC
Confidence            45688999999999998653  36899983  44321       11 0         111  1    1124999999999


Q ss_pred             CCEEEEEEEE
Q psy14896        735 DQGEYICRAS  744 (813)
Q Consensus       735 d~G~Y~C~a~  744 (813)
                      |++.|.|...
T Consensus        90 DtA~YYCAr~   99 (120)
T d1pg7x1          90 DSAVYYCARE   99 (120)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEeeec
Confidence            9999999864

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.52  E-value=0.0012  Score=51.86  Aligned_cols=62  Identities=24%  Similarity=0.496  Sum_probs=42.2

Q ss_pred             cCCCCCCeEEEEEEecCCC--CCeEEEEeC--Cccc------C-CC-c---------eee------ecceEEEECCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYP--VPSYNWTRR--GSPL------P-RN-A---------YFE------NFNRILTIPNVKVE  734 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P--~p~i~W~k~--g~~l------~-~~-~---------~~~------~~~~~L~i~~v~~~  734 (813)
                      ..++.|++++|+|.++|..  .-.+.|+|-  |+.+      . .+ .         ++.      .....|.|.+++.+
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~e   89 (115)
T d1f3dh1          10 ELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTFE   89 (115)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCcC
Confidence            4567899999999999864  346889873  4322      1 11 0         111      11125999999999


Q ss_pred             CCEEEEEEE
Q psy14896        735 DQGEYICRA  743 (813)
Q Consensus       735 d~G~Y~C~a  743 (813)
                      |++.|.|..
T Consensus        90 DtAvYYCAr   98 (115)
T d1f3dh1          90 DSAVYYCAN   98 (115)
T ss_dssp             GCEEEEEEE
T ss_pred             CcEEEEEec
Confidence            999999954

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.51  E-value=0.0023  Score=50.26  Aligned_cols=66  Identities=24%  Similarity=0.477  Sum_probs=45.0

Q ss_pred             cCCCCCCeEEEEEEecCCCCC--eEEEEeC--Cccc------C-CC-c---------ee--ee----cceEEEECCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYPVP--SYNWTRR--GSPL------P-RN-A---------YF--EN----FNRILTIPNVKVE  734 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p--~i~W~k~--g~~l------~-~~-~---------~~--~~----~~~~L~i~~v~~~  734 (813)
                      ..++.|++++|+|.++|+.-.  .+.|+|.  |+.|      . .+ .         ++  ..    ..-.|.|.+++.+
T Consensus        10 ~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~e   89 (118)
T d2fbjh1          10 GLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSE   89 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCCC
Confidence            456889999999999997643  5889873  4322      1 11 1         11  11    1124999999999


Q ss_pred             CCEEEEEEEEcCC
Q psy14896        735 DQGEYICRASNDR  747 (813)
Q Consensus       735 d~G~Y~C~a~N~~  747 (813)
                      |++.|.|......
T Consensus        90 DtAvYYCAr~~~~  102 (118)
T d2fbjh1          90 DTALYYCARLHYY  102 (118)
T ss_dssp             GCEEEEEEEEETT
T ss_pred             cceEEEeeEecCC
Confidence            9999999875543

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=96.48  E-value=0.0024  Score=49.21  Aligned_cols=66  Identities=20%  Similarity=0.328  Sum_probs=37.7

Q ss_pred             ccEEEEeeecc-CC-CCeEEEeeccccccccccc-ccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCc
Q psy14896        210 NDITLSCYAGG-YP-NPSYEWFKEDYVQDRLVAN-LIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKF  280 (813)
Q Consensus       210 ~~v~l~C~~~g-~P-~p~v~W~k~g~~l~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~  280 (813)
                      +.++|.|.+.| .| ...|+|.+||+++...... ......+..|... ..|.+    ..++...|+|++.+..
T Consensus        17 ~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~-s~l~v----~~~~~~~ytC~V~H~s   85 (97)
T d1uvqb1          17 HHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQIL-VMLEM----TPQRGDVYTCHVEHPS   85 (97)
T ss_dssp             --CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEE-EEEEC----CSCTTCCEEEEEECTT
T ss_pred             CCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEE-EEecc----CCCCCCEEEEEEEeCC
Confidence            55899999987 45 4699999999876432211 1111222222211 01222    3556778999999764

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.48  E-value=0.0017  Score=50.55  Aligned_cols=62  Identities=26%  Similarity=0.480  Sum_probs=43.0

Q ss_pred             cCCCCCCeEEEEEEecCCCCC--eEEEEe--CCccc------C-CCc----------ee--ee----cceEEEECCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYPVP--SYNWTR--RGSPL------P-RNA----------YF--EN----FNRILTIPNVKVE  734 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p--~i~W~k--~g~~l------~-~~~----------~~--~~----~~~~L~i~~v~~~  734 (813)
                      ..++.|++++|+|.++|+.-.  .+.|+|  .|+.|      . .+.          ++  ..    ....|.|.+++.+
T Consensus        10 ~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL~~e   89 (116)
T d1mjuh1          10 ELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTSD   89 (116)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccccCCC
Confidence            567889999999999987643  688988  23322      1 111          11  11    1125999999999


Q ss_pred             CCEEEEEEE
Q psy14896        735 DQGEYICRA  743 (813)
Q Consensus       735 d~G~Y~C~a  743 (813)
                      |++.|.|..
T Consensus        90 DtAvYYCAr   98 (116)
T d1mjuh1          90 DSAVYYCAN   98 (116)
T ss_dssp             GCEEEEEEE
T ss_pred             CceEEEEcc
Confidence            999999964

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.48  E-value=0.0017  Score=50.59  Aligned_cols=62  Identities=26%  Similarity=0.575  Sum_probs=42.6

Q ss_pred             cCCCCCCeEEEEEEecCCCC--CeEEEEeC--Cccc------C-CCc----------eee--ec----ceEEEECCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYPV--PSYNWTRR--GSPL------P-RNA----------YFE--NF----NRILTIPNVKVE  734 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~--p~i~W~k~--g~~l------~-~~~----------~~~--~~----~~~L~i~~v~~~  734 (813)
                      ..++.|++++|+|.++|+.-  -.+.|+|-  |+.+      . .+.          ++.  .+    .-.|.|.+++.+
T Consensus        10 ~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~e   89 (114)
T d1indh1          10 DSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRSE   89 (114)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeeccC
Confidence            45788999999999998763  36889883  3322      1 111          111  11    124999999999


Q ss_pred             CCEEEEEEE
Q psy14896        735 DQGEYICRA  743 (813)
Q Consensus       735 d~G~Y~C~a  743 (813)
                      |++.|.|..
T Consensus        90 DtAvYYCA~   98 (114)
T d1indh1          90 DTALYFCAS   98 (114)
T ss_dssp             GCEEEEEEC
T ss_pred             cccEEEECC
Confidence            999999964

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.46  E-value=0.002  Score=50.75  Aligned_cols=63  Identities=30%  Similarity=0.578  Sum_probs=43.4

Q ss_pred             cCCCCCCeEEEEEEecCCCCC--eEEEEeC--Cccc------C-CCc----------eee------ecceEEEECCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYPVP--SYNWTRR--GSPL------P-RNA----------YFE------NFNRILTIPNVKVE  734 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p--~i~W~k~--g~~l------~-~~~----------~~~------~~~~~L~i~~v~~~  734 (813)
                      ..++.|++++|+|.++|+.-.  .+.|+|-  |+.+      . .+.          ++.      .....|.|.+++.+
T Consensus        10 ~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~~e   89 (119)
T d1rz7h1          10 EVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLRSE   89 (119)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccCcc
Confidence            456889999999999987643  6899873  3322      1 111          111      11235999999999


Q ss_pred             CCEEEEEEEE
Q psy14896        735 DQGEYICRAS  744 (813)
Q Consensus       735 d~G~Y~C~a~  744 (813)
                      |++.|.|...
T Consensus        90 DTAvYYCAr~   99 (119)
T d1rz7h1          90 DTAVYYCAAD   99 (119)
T ss_dssp             GCEEEEEEEC
T ss_pred             cceEEEEeec
Confidence            9999999664

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.0012  Score=50.88  Aligned_cols=57  Identities=18%  Similarity=0.499  Sum_probs=38.3

Q ss_pred             CCeEEEEEEecCCCCC--eEEEEeCCcccCCCcee----e------ecceEEEECCCCCCCCEEEEEEEEcC
Q psy14896        687 GDKVRLECVAFGYPVP--SYNWTRRGSPLPRNAYF----E------NFNRILTIPNVKVEDQGEYICRASND  746 (813)
Q Consensus       687 G~~v~l~C~~~g~P~p--~i~W~k~g~~l~~~~~~----~------~~~~~L~i~~v~~~d~G~Y~C~a~N~  746 (813)
                      ++.++|.|.+.|+-+.  .|+|++||..+..+...    .      ...+.|.+.   .++...|+|++...
T Consensus        15 ~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~---~~~~~~ytC~V~H~   83 (95)
T d1k5na1          15 DHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVP---SGEEQRYTCHVQHE   83 (95)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEE---TTCGGGEEEEEECT
T ss_pred             CCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEE---cCCCCEEEEEEEEC
Confidence            4679999999987543  78999999987654321    1      112235553   33445799999875

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.0047  Score=48.43  Aligned_cols=70  Identities=14%  Similarity=0.308  Sum_probs=46.0

Q ss_pred             CCCCeEEEEEEecCC-CC-CeEEEEeCCcccCCCcee----e-----ecceEEEECCCCCC--CCEEEEEEEEcCCCceE
Q psy14896        685 KAGDKVRLECVAFGY-PV-PSYNWTRRGSPLPRNAYF----E-----NFNRILTIPNVKVE--DQGEYICRASNDRSALE  751 (813)
Q Consensus       685 ~~G~~v~l~C~~~g~-P~-p~i~W~k~g~~l~~~~~~----~-----~~~~~L~i~~v~~~--d~G~Y~C~a~N~~G~~~  751 (813)
                      ...+.++|.|.+.|+ |. ..|+|.++|..+......    .     ...+.|+|..-...  ....|+|+|.+..+..+
T Consensus        19 ~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V~H~~~~~~   98 (105)
T d1dn0b2          19 SDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKE   98 (105)
T ss_dssp             --CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEE
T ss_pred             CCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCCEEEEEEEECCCCEE
Confidence            346789999999984 54 489999999876543211    1     11346787766653  23489999998876655


Q ss_pred             EEE
Q psy14896        752 SSV  754 (813)
Q Consensus       752 ~~~  754 (813)
                      ..+
T Consensus        99 ~~v  101 (105)
T d1dn0b2          99 KNV  101 (105)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            544

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.45  E-value=0.0012  Score=52.33  Aligned_cols=69  Identities=22%  Similarity=0.460  Sum_probs=40.3

Q ss_pred             ccEEEEeeecc-CCC-CeEEEeeccccccccccc--ccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCc
Q psy14896        210 NDITLSCYAGG-YPN-PSYEWFKEDYVQDRLVAN--LIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKF  280 (813)
Q Consensus       210 ~~v~l~C~~~g-~P~-p~v~W~k~g~~l~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~  280 (813)
                      +.++|.|.+.| .|. ..|+|++||+++......  ......+..|... ..|.|... .-.....|+|.+.+..
T Consensus        21 ~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~-S~L~v~~~-~W~~g~~ytC~V~H~~   93 (107)
T d1mjul2          21 GGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMS-STLTLTKD-EYERHNSYTCEATHKT   93 (107)
T ss_dssp             TEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEE-EEEEEEHH-HHHTCCEEEEEEECTT
T ss_pred             CceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEE-EEEEECHH-HhCCCCEEEEEEEECC
Confidence            45999999987 464 589999999877543211  1111223333332 23444331 2223567999999754

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.44  E-value=0.0023  Score=51.11  Aligned_cols=64  Identities=17%  Similarity=0.297  Sum_probs=44.8

Q ss_pred             cCCCCCCeEEEEEEecCCCCCeEEEEeC--CcccC-------CC---------ceee---ecceEEEECCCCCCCCEEEE
Q psy14896        682 EAPKAGDKVRLECVAFGYPVPSYNWTRR--GSPLP-------RN---------AYFE---NFNRILTIPNVKVEDQGEYI  740 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~--g~~l~-------~~---------~~~~---~~~~~L~i~~v~~~d~G~Y~  740 (813)
                      ..+.+|++++|.|...+.-...+.|||-  |+.+.       .+         .++.   ..+..|+|..+..+|++.|.
T Consensus        11 ~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~~~dsa~Y~   90 (112)
T d1fo0b_          11 RLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQGRTLY   90 (112)
T ss_dssp             EECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEESCCSCEEEE
T ss_pred             EEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCCccCCccEE
Confidence            4578999999999987655568999984  33220       11         1111   22346899999999999999


Q ss_pred             EEEEc
Q psy14896        741 CRASN  745 (813)
Q Consensus       741 C~a~N  745 (813)
                      |.+.-
T Consensus        91 Ca~~~   95 (112)
T d1fo0b_          91 CTCSA   95 (112)
T ss_dssp             EEEES
T ss_pred             EEEec
Confidence            99753

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.42  E-value=0.0018  Score=50.71  Aligned_cols=62  Identities=19%  Similarity=0.482  Sum_probs=43.0

Q ss_pred             cCCCCCCeEEEEEEecCCCCC--eEEEEeC--Cccc------C-C-Cc-ee----------ee----cceEEEECCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYPVP--SYNWTRR--GSPL------P-R-NA-YF----------EN----FNRILTIPNVKVE  734 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p--~i~W~k~--g~~l------~-~-~~-~~----------~~----~~~~L~i~~v~~~  734 (813)
                      ..++.|++++|+|.++|..--  .+.|+|.  |+.|      . . +. .+          ..    ....|.|.+++.+
T Consensus        10 ~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL~~e   89 (118)
T d2jelh1          10 ELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLTSE   89 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeecccccccC
Confidence            457889999999999987743  6899883  4322      1 1 11 11          11    1125999999999


Q ss_pred             CCEEEEEEE
Q psy14896        735 DQGEYICRA  743 (813)
Q Consensus       735 d~G~Y~C~a  743 (813)
                      |++.|.|..
T Consensus        90 DTAvYYCAr   98 (118)
T d2jelh1          90 DSAIYYCAR   98 (118)
T ss_dssp             GCEEEEEEE
T ss_pred             cceeeeEEE
Confidence            999999943

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.41  E-value=0.0017  Score=51.50  Aligned_cols=63  Identities=25%  Similarity=0.557  Sum_probs=0.0

Q ss_pred             CcCCCCCCeEEEEEEecCCCCC--eEEEEe--CCcccCCCceeeecceE-----------------------EEECCCCC
Q psy14896        681 PEAPKAGDKVRLECVAFGYPVP--SYNWTR--RGSPLPRNAYFENFNRI-----------------------LTIPNVKV  733 (813)
Q Consensus       681 ~~~~~~G~~v~l~C~~~g~P~p--~i~W~k--~g~~l~~~~~~~~~~~~-----------------------L~i~~v~~  733 (813)
                      ...++.|++++|+|.+.|..-.  .+.|+|  .|+.+.--..+....+.                       |+|.+++.
T Consensus         9 ~~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~   88 (119)
T d1qnzh_           9 AELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTS   88 (119)
T ss_dssp             CCEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECG
T ss_pred             CceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCc


Q ss_pred             CCCEEEEEEE
Q psy14896        734 EDQGEYICRA  743 (813)
Q Consensus       734 ~d~G~Y~C~a  743 (813)
                      +|++.|.|..
T Consensus        89 eDsAvYYCA~   98 (119)
T d1qnzh_          89 DDSAVYYCAI   98 (119)
T ss_dssp             GGCEEEEEEE
T ss_pred             cceeEEEEEE

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.41  E-value=0.0047  Score=48.61  Aligned_cols=71  Identities=25%  Similarity=0.411  Sum_probs=42.4

Q ss_pred             cccccEEEEeeeccCC--CCeEEEeecc--ccccccc------ccccccCCCccEEee-C---C--eEEEcCCccccCCe
Q psy14896        207 SILNDITLSCYAGGYP--NPSYEWFKED--YVQDRLV------ANLIDPLSDKRFTLS-G---G--NLIINDPRQVEDRG  270 (813)
Q Consensus       207 ~~g~~v~l~C~~~g~P--~p~v~W~k~g--~~l~~~~------~~~~~~~~~~~~~~~-~---~--~l~i~~~~~~~d~G  270 (813)
                      +.|++++|.|.++|..  .-.+.|||.-  +.++-..      .....+.-..|+++. +   .  .|.|.+. +.+|++
T Consensus        12 kPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L-~~eDtA   90 (119)
T d1kxvc_          12 PAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSL-KPDDTA   90 (119)
T ss_dssp             CTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSC-CGGGCE
T ss_pred             CCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccC-CcCCcc
Confidence            3458899999999854  3368899862  2221110      011122223456553 1   1  3666665 899999


Q ss_pred             eEEEEeec
Q psy14896        271 SYHCKASN  278 (813)
Q Consensus       271 ~Y~C~a~n  278 (813)
                      .|.|....
T Consensus        91 ~YYCAr~~   98 (119)
T d1kxvc_          91 MYYCKPSL   98 (119)
T ss_dssp             EEEEEEEE
T ss_pred             eEeeeecc
Confidence            99997543

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.39  E-value=0.0013  Score=51.38  Aligned_cols=64  Identities=16%  Similarity=0.304  Sum_probs=42.7

Q ss_pred             CCCCeEEEEEEecC-CCC-CeEEEEeCCcccCCCc---eee----ecceEEEECCCCCCCCEEEEEEEEcCCCc
Q psy14896        685 KAGDKVRLECVAFG-YPV-PSYNWTRRGSPLPRNA---YFE----NFNRILTIPNVKVEDQGEYICRASNDRSA  749 (813)
Q Consensus       685 ~~G~~v~l~C~~~g-~P~-p~i~W~k~g~~l~~~~---~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~  749 (813)
                      ..++.++|.|.+.| +|. ..|+|.++|.......   ...    ...+.|+|..-... .|.|+|++.+....
T Consensus        18 ~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~~s~~S~L~v~~~~w~-~~~ytC~V~H~~~~   90 (101)
T d1kcvh2          18 AAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAVLQSGLYTLSSNTTVASGTWP-SASVTCLVAHPKSS   90 (101)
T ss_dssp             TTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTTT-TSCCEEEEEEGGGT
T ss_pred             cCCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeeeecCCCCEEEEEEEEEchhhcC-CCeEEEEEEeCCCC
Confidence            35789999999998 453 4899988886532110   111    12356888766664 57899999986543

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.38  E-value=0.0038  Score=48.00  Aligned_cols=70  Identities=23%  Similarity=0.360  Sum_probs=40.8

Q ss_pred             cccccEEEEeeeccC--CCCeEEEeecc--ccccc------ccccccccCCCccEEee-C---C--eEEEcCCccccCCe
Q psy14896        207 SILNDITLSCYAGGY--PNPSYEWFKED--YVQDR------LVANLIDPLSDKRFTLS-G---G--NLIINDPRQVEDRG  270 (813)
Q Consensus       207 ~~g~~v~l~C~~~g~--P~p~v~W~k~g--~~l~~------~~~~~~~~~~~~~~~~~-~---~--~l~i~~~~~~~d~G  270 (813)
                      +.|++++|.|+++|.  ..-.+.|+|.-  +.++-      .......+.-..|+++. +   .  .|.|.+. +.+|++
T Consensus         6 kPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l-~~eDtA   84 (107)
T d1sjva_           6 QAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSL-EPEDTA   84 (107)
T ss_dssp             CTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSC-CGGGCS
T ss_pred             cCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCC-Ccccce
Confidence            346889999999884  34468899862  22211      00112223333455553 1   1  2666665 899999


Q ss_pred             eEEEEee
Q psy14896        271 SYHCKAS  277 (813)
Q Consensus       271 ~Y~C~a~  277 (813)
                      .|.|...
T Consensus        85 vYyCA~~   91 (107)
T d1sjva_          85 VYYCYTH   91 (107)
T ss_dssp             EEEEEEC
T ss_pred             eeeEecc
Confidence            9999643

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.0039  Score=44.47  Aligned_cols=64  Identities=23%  Similarity=0.379  Sum_probs=41.7

Q ss_pred             CCCCeEEEEEEecCCCCCeEEEEeCCcc-cCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896        685 KAGDKVRLECVAFGYPVPSYNWTRRGSP-LPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ  759 (813)
Q Consensus       685 ~~G~~v~l~C~~~g~P~p~i~W~k~g~~-l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  759 (813)
                      ..|+.+.|.|...-  .-.|+|.||+.. +..      .+.+|+|.=-..-|+|.|+|. .+  |+.-....|.|+
T Consensus        19 ~~~~~V~L~C~t~e--E~~I~W~kd~~se~~~------~GntltV~VkE~~~aGnYTCh-k~--g~~Lnht~lLih   83 (87)
T d3d85d1          19 APGEMVVLTCDTPE--EDGITWTLDQSSEVLG------SGKTLTIQVKEFGDAGQYTCH-KG--GEVLSHSLLLLH   83 (87)
T ss_dssp             CCCEEEEEECSSSC--CSSCEEEETTCCCCCE------ESSEEEEEECSGGGCEEEEEE-ET--TEEEEEEEEEEE
T ss_pred             CCccEEEEecCCCc--ccccEEeeCCcccccc------CCCEEEEEEEeccCCcceeEe-CC--CcEeeeEEEEEE
Confidence            35789999994321  237999999765 211      245677744445799999996 32  776555555554

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.37  E-value=0.0028  Score=46.25  Aligned_cols=54  Identities=22%  Similarity=0.430  Sum_probs=35.9

Q ss_pred             cccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecC
Q psy14896        209 LNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNK  279 (813)
Q Consensus       209 g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~  279 (813)
                      |.+|+|+|...+  .-.|.|.+|+..+.         ...      +..|++.+-...+|+|.|.|...+.
T Consensus        14 GTtV~LTCP~~~--~~~I~Wkkn~~~i~---------g~~------~~~L~L~~FSE~e~SGyY~C~~~~~   67 (100)
T d1jbja2          14 GTSVELTCPLDS--DENLKWEKNGQELP---------QKH------DKHLVLQDFSEVEDSGYYVCYTPAS   67 (100)
T ss_dssp             TTEEEEECSSCC--CTTCEEEETTEEEC---------SCC------CSEEEEESCCTTTSCEEEEEECSSC
T ss_pred             CCEEEEECCCCC--CCceEEeeccccCC---------CCC------CcEEEEccccccccCcceEEecCCC
Confidence            466999999765  24799999997652         111      1234444432468999999975543

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=96.37  E-value=0.0029  Score=49.53  Aligned_cols=63  Identities=24%  Similarity=0.463  Sum_probs=43.3

Q ss_pred             cCCCCCCeEEEEEEecCCCC--CeEEEEeC--Cccc------CCCc----------ee--eec----ceEEEECCCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYPV--PSYNWTRR--GSPL------PRNA----------YF--ENF----NRILTIPNVKVED  735 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~--p~i~W~k~--g~~l------~~~~----------~~--~~~----~~~L~i~~v~~~d  735 (813)
                      ..++.|++++|+|.++|+.-  -.+.|+|.  |+.|      ..+.          ++  ..+    ...|.|.+++.+|
T Consensus        10 ~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~eD   89 (118)
T d1lo4h1          10 DLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSED   89 (118)
T ss_dssp             CEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccCCc
Confidence            45688999999999998763  37889873  3322      1110          11  111    1359999999999


Q ss_pred             CEEEEEEEE
Q psy14896        736 QGEYICRAS  744 (813)
Q Consensus       736 ~G~Y~C~a~  744 (813)
                      ++.|.|...
T Consensus        90 tA~YyCAr~   98 (118)
T d1lo4h1          90 TAIYYCARG   98 (118)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEeccc
Confidence            999999654

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.36  E-value=0.00015  Score=57.43  Aligned_cols=66  Identities=15%  Similarity=0.128  Sum_probs=41.4

Q ss_pred             CCCceEEeCCCCCCCc-cEEEEccCCCCCcccCCCeEEEeeCcc------EEEEeecccCCeeEEEEEEeeec
Q psy14896        583 NWGKAMFCDPPTNYPG-VNYYWARDYFPNFVEEDKRVFVSYDGA------LYFSALEQIDAGNYSCNVQSKVS  648 (813)
Q Consensus       583 g~~~~l~C~~~~~~p~-~~v~W~k~~~~~~~~~~~~~~~~~~~~------L~i~~~~~~d~G~Y~C~a~n~~g  648 (813)
                      +..++|.|.+.+.+|. ..|+|++||.++............+++      |.|..-...+...|+|.|.+...
T Consensus        20 ~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~~ytC~V~H~~~   92 (104)
T d1nfde2          20 TNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGE   92 (104)
T ss_dssp             TTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTT
T ss_pred             CCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCCEEEEEEEECCC
Confidence            4568899999555665 589999998764322111122233454      44444444566789999998753

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=96.36  E-value=0.0015  Score=52.80  Aligned_cols=68  Identities=15%  Similarity=0.182  Sum_probs=38.3

Q ss_pred             ccEEEEeeeccC-C---CCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCC-eeEEEEeecCc
Q psy14896        210 NDITLSCYAGGY-P---NPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR-GSYHCKASNKF  280 (813)
Q Consensus       210 ~~v~l~C~~~g~-P---~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~-G~Y~C~a~n~~  280 (813)
                      +.++|.|.+.|. |   ...|+|++||.++............+..|... ..|.|..  +.-+. ..|+|+|.+..
T Consensus        33 ~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gt~s~~-S~L~v~~--~eW~~g~~ytC~V~H~~  105 (119)
T d1igtb3          33 LSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVV-SALPIQH--QDWMSGKEFKCKVNNKD  105 (119)
T ss_dssp             SCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEE-EEEECCH--HHHHTTCEEEEEEECTT
T ss_pred             CceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECccEECCCCcEEEE-EEEEEeH--HHhCCCCeEEEEEEECC
Confidence            669999999884 5   35789999998764332211111222222211 1233221  22234 56999999754

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.36  E-value=0.0036  Score=48.89  Aligned_cols=69  Identities=25%  Similarity=0.418  Sum_probs=42.1

Q ss_pred             ccccEEEEeeeccCC--CCeEEEeec--ccccccc-------cccccccCCCccEEee----CCe--EEEcCCccccCCe
Q psy14896        208 ILNDITLSCYAGGYP--NPSYEWFKE--DYVQDRL-------VANLIDPLSDKRFTLS----GGN--LIINDPRQVEDRG  270 (813)
Q Consensus       208 ~g~~v~l~C~~~g~P--~p~v~W~k~--g~~l~~~-------~~~~~~~~~~~~~~~~----~~~--l~i~~~~~~~d~G  270 (813)
                      .|++++|.|+++|..  .-.+.|+|.  |+.++=.       ......+.-..|+++.    ..+  |.+.+. +.+|++
T Consensus        14 pg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L-~~eDTA   92 (117)
T d1jpth1          14 PGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSL-RAEDTA   92 (117)
T ss_dssp             TTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSC-CGGGCE
T ss_pred             CCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEeccccc-CCCCce
Confidence            348899999999865  347899985  3322110       0112233344556654    222  565564 899999


Q ss_pred             eEEEEee
Q psy14896        271 SYHCKAS  277 (813)
Q Consensus       271 ~Y~C~a~  277 (813)
                      .|.|...
T Consensus        93 vYYCAr~   99 (117)
T d1jpth1          93 VYYCARD   99 (117)
T ss_dssp             EEEEEEE
T ss_pred             EEEEeec
Confidence            9999643

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.36  E-value=0.0035  Score=50.23  Aligned_cols=64  Identities=28%  Similarity=0.458  Sum_probs=43.8

Q ss_pred             cCCCCCCeEEEEEEecCCCC--CeEEEEeC--CcccC------------CCc----------eee------ecceEEEEC
Q psy14896        682 EAPKAGDKVRLECVAFGYPV--PSYNWTRR--GSPLP------------RNA----------YFE------NFNRILTIP  729 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~--p~i~W~k~--g~~l~------------~~~----------~~~------~~~~~L~i~  729 (813)
                      ..+++|++++|+|.++|..-  -.+.|+|.  |+.+.            .+.          ++.      .....|.|.
T Consensus        10 ~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i~   89 (127)
T d1i3ua_          10 GLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQMN   89 (127)
T ss_dssp             EECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEEC
T ss_pred             ceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEeee
Confidence            45688999999999998753  36889973  33210            010          111      112359999


Q ss_pred             CCCCCCCEEEEEEEEc
Q psy14896        730 NVKVEDQGEYICRASN  745 (813)
Q Consensus       730 ~v~~~d~G~Y~C~a~N  745 (813)
                      +++.+|++.|.|.+.-
T Consensus        90 ~l~~eDtAvYYCAr~~  105 (127)
T d1i3ua_          90 SLKPEDTAVYYCAAKT  105 (127)
T ss_dssp             SCCGGGCEEEEEEEES
T ss_pred             cccccceeEEEEEEEe
Confidence            9999999999998653

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=96.35  E-value=0.0027  Score=48.98  Aligned_cols=69  Identities=17%  Similarity=0.290  Sum_probs=0.0

Q ss_pred             ccccEEEEeeecc-CCCC-eEEEeecccccccccccccccCCCccEEeeCCeEEEcCC--ccccCCeeEEEEeec
Q psy14896        208 ILNDITLSCYAGG-YPNP-SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDP--RQVEDRGSYHCKASN  278 (813)
Q Consensus       208 ~g~~v~l~C~~~g-~P~p-~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~--~~~~d~G~Y~C~a~n  278 (813)
                      ....++|.|.+.| .|.. .|+|.|||+.+....  .............+|+..+...  +..++...|+|.+..
T Consensus        13 ~~~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~--~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H   85 (98)
T d1u58a1          13 REGGMRLRCFARDYYPADLEIRWWKDDGGGGALP--QTSKQHHDPLPSGNGLYQKHIDVYVDGGLEHVYSCRVKG   85 (98)
T ss_dssp             SSSCEEEEEEEEEEBSSCEEEEEEEECSSSCEEE--CCCSCCCCCEECSSSCEEEEEEEEECTTCGGGEEEEEEE
T ss_pred             CCCcEEEEEEEEEEcCCCCEEEEEECCccccCcE--eeeeEEcceeeCCCCEEEEEEEEEECCCCCCEEEEEEEe

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.0015  Score=51.90  Aligned_cols=69  Identities=16%  Similarity=0.282  Sum_probs=39.8

Q ss_pred             ccEEEEeeecc-CCCC-eEEEeeccccccccccccc-----ccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCc
Q psy14896        210 NDITLSCYAGG-YPNP-SYEWFKEDYVQDRLVANLI-----DPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKF  280 (813)
Q Consensus       210 ~~v~l~C~~~g-~P~p-~v~W~k~g~~l~~~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~  280 (813)
                      +.++|.|.+.| +|.. .|+|++||+++........     ....+..|.. ...|.|... .-.....|+|+|.+..
T Consensus        21 ~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~-~S~L~v~~~-~w~~g~~ytC~V~H~s   96 (108)
T d1ow0a2          21 ELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAV-TSILRVAAE-DWKKGDTFSCMVGHEA   96 (108)
T ss_dssp             SEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEE-EEEEEEEHH-HHHHTCCEEEEEECTT
T ss_pred             CceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEE-EEEEEEcHH-HhCCCCEEEEEEEeCC
Confidence            67999999987 4644 9999999988754321100     0111222222 122344321 2233568999998754

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=96.35  E-value=0.0024  Score=48.99  Aligned_cols=67  Identities=15%  Similarity=0.267  Sum_probs=38.7

Q ss_pred             ccEEEEeeeccC-CC-CeEEEeeccccccccccc--ccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCce
Q psy14896        210 NDITLSCYAGGY-PN-PSYEWFKEDYVQDRLVAN--LIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFG  281 (813)
Q Consensus       210 ~~v~l~C~~~g~-P~-p~v~W~k~g~~l~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g  281 (813)
                      +.++|.|.+.|+ |. ..|+|++||..+......  ......+..|.. ...|.+.    .+|...|+|++.....
T Consensus        16 ~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~-~s~l~v~----~~~~~~ytC~V~H~~~   86 (94)
T d1hyrc1          16 GNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQT-WVATRIC----QGEEQRFTCYMEHSGN   86 (94)
T ss_dssp             SEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEE-EEEEEEE----TTCGGGEEEEEEETTE
T ss_pred             CCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEE-EEEEEEc----CCCCCEEEEEEEECCC
Confidence            458999999984 54 499999999877533211  111122222221 1123332    3444579999987643

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.34  E-value=0.005  Score=48.26  Aligned_cols=70  Identities=20%  Similarity=0.337  Sum_probs=42.4

Q ss_pred             ccccEEEEeeeccCCCC--eEEEeec--ccccccc-------cccccccCCCccEEee-C---C--eEEEcCCccccCCe
Q psy14896        208 ILNDITLSCYAGGYPNP--SYEWFKE--DYVQDRL-------VANLIDPLSDKRFTLS-G---G--NLIINDPRQVEDRG  270 (813)
Q Consensus       208 ~g~~v~l~C~~~g~P~p--~v~W~k~--g~~l~~~-------~~~~~~~~~~~~~~~~-~---~--~l~i~~~~~~~d~G  270 (813)
                      .|++++|.|.++|....  .+.|+|.  |+.++=.       ......+.-..|+++. +   .  .|.+.+ ++.+|++
T Consensus        14 pg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~s-L~~eDtA   92 (118)
T d2fbjh1          14 PGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSK-VRSEDTA   92 (118)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECS-CCGGGCE
T ss_pred             CCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccc-cCCCcce
Confidence            34889999999986533  6889974  4333211       0112223334455554 1   1  256656 4899999


Q ss_pred             eEEEEeec
Q psy14896        271 SYHCKASN  278 (813)
Q Consensus       271 ~Y~C~a~n  278 (813)
                      .|.|....
T Consensus        93 vYYCAr~~  100 (118)
T d2fbjh1          93 LYYCARLH  100 (118)
T ss_dssp             EEEEEEEE
T ss_pred             EEEeeEec
Confidence            99997654

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.0029  Score=46.49  Aligned_cols=49  Identities=18%  Similarity=0.216  Sum_probs=38.7

Q ss_pred             cCCCeEEEeeCccEEEEeecccCCeeEEEEEEeeecCccccCceeeEEEc
Q psy14896        613 EEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF  662 (813)
Q Consensus       613 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~  662 (813)
                      .....+.+..+|+|.|..+..+|+|.|...|.|..|.... ...+.|.|.
T Consensus        52 ~~~~~y~i~~nGtLkIK~L~~~d~GtYkv~vYd~~Gk~vl-ektf~LkI~  100 (101)
T d1hnfa1          52 KEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVL-EKIFDLKIQ  100 (101)
T ss_dssp             ESCTTEEECTTSCEEECSCCGGGCEEEEEEEEETTSCEEE-EEEEEEEEE
T ss_pred             CCCceEEEccCCcEEeeeeeecCCCcEEEEEEcCCCcEee-eeeEEEEee
Confidence            4455688999999999999999999999999999886432 334555553

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.31  E-value=0.0043  Score=49.14  Aligned_cols=63  Identities=24%  Similarity=0.445  Sum_probs=43.5

Q ss_pred             cCCCCCCeEEEEEEecCCC--CCeEEEEeC--CcccC-------CCc----------eee------ecceEEEECCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYP--VPSYNWTRR--GSPLP-------RNA----------YFE------NFNRILTIPNVKVE  734 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P--~p~i~W~k~--g~~l~-------~~~----------~~~------~~~~~L~i~~v~~~  734 (813)
                      ..++.|++++|+|.++|..  .-.+.|+|.  |+.+.       .+.          ++.      .....|.|.+++.+
T Consensus        10 ~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~~e   89 (121)
T d1j05b_          10 ELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSE   89 (121)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccCcC
Confidence            4578899999999999865  337899873  43321       111          111      01224999999999


Q ss_pred             CCEEEEEEEE
Q psy14896        735 DQGEYICRAS  744 (813)
Q Consensus       735 d~G~Y~C~a~  744 (813)
                      |++.|.|...
T Consensus        90 DtAvYYCAr~   99 (121)
T d1j05b_          90 DTAVYYCAPF   99 (121)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEeEee
Confidence            9999999754

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.31  E-value=0.0022  Score=50.03  Aligned_cols=65  Identities=15%  Similarity=0.137  Sum_probs=41.3

Q ss_pred             ccCCCceEEeCCCCCCCc-cEEEEccCCCCCcccCCCeEEEeeCcc------EEEEeecccCCeeEEEEEEeeec
Q psy14896        581 NQNWGKAMFCDPPTNYPG-VNYYWARDYFPNFVEEDKRVFVSYDGA------LYFSALEQIDAGNYSCNVQSKVS  648 (813)
Q Consensus       581 ~~g~~~~l~C~~~~~~p~-~~v~W~k~~~~~~~~~~~~~~~~~~~~------L~i~~~~~~d~G~Y~C~a~n~~g  648 (813)
                      ..+..++|.|.+.+.+|. ..|+|.+++..........  ...+|+      |.|..-.. +.|.|+|.+.+..+
T Consensus        18 ~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~--~~~~g~~s~~S~L~v~~~~w-~~~~ytC~V~H~~~   89 (101)
T d1kcvh2          18 AAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSA--VLQSGLYTLSSNTTVASGTW-PSASVTCLVAHPKS   89 (101)
T ss_dssp             TTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCC--EEETTEEEEEEEEEEETTTT-TTSCCEEEEEEGGG
T ss_pred             cCCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeee--ecCCCCEEEEEEEEEchhhc-CCCeEEEEEEeCCC
Confidence            346788999999554664 7899999886532222221  224554      44443333 36899999999764

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.29  E-value=0.0049  Score=49.16  Aligned_cols=64  Identities=25%  Similarity=0.474  Sum_probs=43.9

Q ss_pred             cCCCCCCeEEEEEEecCCCC--CeEEEEeC--CcccC-------CC-c---------ee--ee----cceEEEECCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYPV--PSYNWTRR--GSPLP-------RN-A---------YF--EN----FNRILTIPNVKVE  734 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~--p~i~W~k~--g~~l~-------~~-~---------~~--~~----~~~~L~i~~v~~~  734 (813)
                      ..++.|++++|+|.++|..-  -.+.|+|.  |+.|.       .+ .         ++  ..    ..-.|.|.+++.+
T Consensus         9 ~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L~~e   88 (130)
T d1rhhb1           9 EVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNLRSD   88 (130)
T ss_dssp             EEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeeccCCC
Confidence            45688999999999998653  36889873  43221       11 0         11  11    1124999999999


Q ss_pred             CCEEEEEEEEc
Q psy14896        735 DQGEYICRASN  745 (813)
Q Consensus       735 d~G~Y~C~a~N  745 (813)
                      |++.|.|....
T Consensus        89 DtAvYyCAr~~   99 (130)
T d1rhhb1          89 DTAVYYCARDF   99 (130)
T ss_dssp             GCEEEEEEEEC
T ss_pred             CcEEEEEEeec
Confidence            99999997654

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=96.29  E-value=0.0056  Score=48.57  Aligned_cols=63  Identities=22%  Similarity=0.458  Sum_probs=42.2

Q ss_pred             cCCCCCCeEEEEEEecCCCC----CeEEEEeC--CcccC-------CC---------ceee--ec----ceEEEECCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYPV----PSYNWTRR--GSPLP-------RN---------AYFE--NF----NRILTIPNVKV  733 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~----p~i~W~k~--g~~l~-------~~---------~~~~--~~----~~~L~i~~v~~  733 (813)
                      ..+++|++++|+|.+.|..-    -.+.|+|.  |+.+.       .+         .++.  .+    ...|.|.+++.
T Consensus        10 ~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~~   89 (123)
T d1r0ah1          10 GIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVET   89 (123)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeeccc
Confidence            45678999999999987542    25789973  33221       11         1111  11    13499999999


Q ss_pred             CCCEEEEEEEE
Q psy14896        734 EDQGEYICRAS  744 (813)
Q Consensus       734 ~d~G~Y~C~a~  744 (813)
                      +|++.|.|...
T Consensus        90 eDsAvYyCAr~  100 (123)
T d1r0ah1          90 ADTAIYYCAQS  100 (123)
T ss_dssp             GGCEEEEEEEE
T ss_pred             ccceEEeeccc
Confidence            99999999753

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.0016  Score=51.58  Aligned_cols=70  Identities=16%  Similarity=0.391  Sum_probs=40.2

Q ss_pred             ccEEEEeeecc-CCC-CeEEEeecccccccccccccc--cCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCce
Q psy14896        210 NDITLSCYAGG-YPN-PSYEWFKEDYVQDRLVANLID--PLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFG  281 (813)
Q Consensus       210 ~~v~l~C~~~g-~P~-p~v~W~k~g~~l~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g  281 (813)
                      +.++|.|.+.| .|. ..|+|++||+.+.........  ...+..|.. ...|.|... .-+....|+|++.+...
T Consensus        21 ~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~-~S~L~v~~~-~W~~~~~ytC~V~H~~~   94 (107)
T d1c5cl2          21 GTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSL-SSTLTLSKA-DYEKHKVYACEVTHQGL   94 (107)
T ss_dssp             TEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEE-EEEEEEEHH-HHTTCCEEEEEEECTTC
T ss_pred             CceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEE-EEEEEECHH-HhCCCCEEEEEEEECCC
Confidence            45999999987 464 489999999876443221111  122233332 223444321 12334479999998543

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=96.28  E-value=0.0029  Score=49.63  Aligned_cols=63  Identities=22%  Similarity=0.490  Sum_probs=43.0

Q ss_pred             cCCCCCCeEEEEEEecCCCC--CeEEEEeC--Cccc------CC-C-c-ee----------e----ecceEEEECCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYPV--PSYNWTRR--GSPL------PR-N-A-YF----------E----NFNRILTIPNVKVE  734 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~--p~i~W~k~--g~~l------~~-~-~-~~----------~----~~~~~L~i~~v~~~  734 (813)
                      ..++.|++++|+|.++|+.-  -.+.|+|.  |+.|      .. + . .+          .    .....|.|.+++.+
T Consensus        10 ~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~~e   89 (118)
T d1ct8b1          10 VLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLTTE   89 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccCCC
Confidence            45788999999999998653  36888873  4322      11 1 1 11          1    11235999999999


Q ss_pred             CCEEEEEEEE
Q psy14896        735 DQGEYICRAS  744 (813)
Q Consensus       735 d~G~Y~C~a~  744 (813)
                      |++.|.|...
T Consensus        90 DtAvYYCAr~   99 (118)
T d1ct8b1          90 DSAIYYCARY   99 (118)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEeee
Confidence            9999999653

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.0064  Score=48.97  Aligned_cols=23  Identities=17%  Similarity=0.388  Sum_probs=20.4

Q ss_pred             cEEEeeeeecCCeeeEEEEeeec
Q psy14896        352 ALYFSALEQIDAGNYSCNVQSKV  374 (813)
Q Consensus       352 ~L~i~~v~~~D~G~Y~C~a~n~~  374 (813)
                      +|.|.+++.+|+|.|.|.+....
T Consensus        78 ~L~I~~l~~~DsavYyCa~~~~~  100 (118)
T d1yjdc1          78 TFYLQNLYVNQTDIYFCKIEVMY  100 (118)
T ss_dssp             EEEEESCCGGGCEEEEEEEEEEE
T ss_pred             EEEECCCCcccCeEEEEEEeccc
Confidence            69999999999999999886544

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.27  E-value=0.0013  Score=54.06  Aligned_cols=62  Identities=16%  Similarity=0.315  Sum_probs=44.2

Q ss_pred             CCCCeEEEEEEecCC-CC-CeEEEEeCCcccCCCcee---------------eecceEEEECCCCCCCCE-EEEEEEEcC
Q psy14896        685 KAGDKVRLECVAFGY-PV-PSYNWTRRGSPLPRNAYF---------------ENFNRILTIPNVKVEDQG-EYICRASND  746 (813)
Q Consensus       685 ~~G~~v~l~C~~~g~-P~-p~i~W~k~g~~l~~~~~~---------------~~~~~~L~i~~v~~~d~G-~Y~C~a~N~  746 (813)
                      ..+..++|.|.+.|+ |. ..|+|++||+.+..+...               ....+.|.|.....++.| .|+|++...
T Consensus        18 ~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~W~~~g~~ytC~V~H~   97 (127)
T d1ogae2          18 SHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFY   97 (127)
T ss_dssp             HHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEEC
T ss_pred             ccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHHhCCCCCEEEEEEEEC
Confidence            446789999999985 43 389999999987643211               011256888776667766 799999875

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=96.26  E-value=0.0053  Score=47.95  Aligned_cols=69  Identities=16%  Similarity=0.345  Sum_probs=41.7

Q ss_pred             ccccEEEEeeeccCCC--CeEEEeec--ccccccc------cccccccCCCccEEee----CC--eEEEcCCccccCCee
Q psy14896        208 ILNDITLSCYAGGYPN--PSYEWFKE--DYVQDRL------VANLIDPLSDKRFTLS----GG--NLIINDPRQVEDRGS  271 (813)
Q Consensus       208 ~g~~v~l~C~~~g~P~--p~v~W~k~--g~~l~~~------~~~~~~~~~~~~~~~~----~~--~l~i~~~~~~~d~G~  271 (813)
                      .|++++|.|+++|...  -.+.|+|.  |+.++=.      ......+.-..|+++.    ..  .|.|.+. +.+|++.
T Consensus        14 Pg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l-~~eDTAv   92 (116)
T d1a2yb_          14 PSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSL-HTDDTAR   92 (116)
T ss_dssp             TTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSC-CGGGCEE
T ss_pred             CCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeee-eeccceE
Confidence            3488999999998543  36889986  3322110      0112223334455553    11  2666664 8999999


Q ss_pred             EEEEee
Q psy14896        272 YHCKAS  277 (813)
Q Consensus       272 Y~C~a~  277 (813)
                      |.|.-.
T Consensus        93 YYCAr~   98 (116)
T d1a2yb_          93 YYCARE   98 (116)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999754

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.26  E-value=0.0027  Score=49.81  Aligned_cols=62  Identities=23%  Similarity=0.462  Sum_probs=42.3

Q ss_pred             cCCCCCCeEEEEEEecCCC--CCeEEEEeC--Cccc------C--CCc---------ee--ee----cceEEEECCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYP--VPSYNWTRR--GSPL------P--RNA---------YF--EN----FNRILTIPNVKVE  734 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P--~p~i~W~k~--g~~l------~--~~~---------~~--~~----~~~~L~i~~v~~~  734 (813)
                      ..+++|++++|+|.++|..  .-.+.|+|.  |+.|      .  .+.         ++  ..    ....|.|.+++.+
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L~~e   89 (117)
T d1mfah1          10 VVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLTSE   89 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecccCCC
Confidence            4568899999999999865  336888873  4422      1  110         11  11    1135999999999


Q ss_pred             CCEEEEEEE
Q psy14896        735 DQGEYICRA  743 (813)
Q Consensus       735 d~G~Y~C~a  743 (813)
                      |++.|.|..
T Consensus        90 DtAvYYCAr   98 (117)
T d1mfah1          90 DSAVYYCTR   98 (117)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEEec
Confidence            999999954

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.26  E-value=0.0075  Score=47.00  Aligned_cols=70  Identities=17%  Similarity=0.281  Sum_probs=47.2

Q ss_pred             CCCCceeecCCCeEEEecCCCCCC--cceEEEeec--ccccc--------------ccCCccEEEccCc-----cEEEee
Q psy14896        301 KRAPEIGNQNWGKAMFCDPPTNYP--GVNYYWARD--YFPNF--------------VEEDKRVFVSYDG-----ALYFSA  357 (813)
Q Consensus       301 ~~~~~~~~~~~~~~l~C~~~~~~p--~~~v~W~k~--~~~~~--------------~~~~~~~~~~~~~-----~L~i~~  357 (813)
                      +..+..+..|+.++|.|.+. |..  .--+.|+|-  |+.+.              ..-..|+.++.+.     .|.|.+
T Consensus         6 eSG~~lvkPg~sl~LsC~~S-G~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~s   84 (117)
T d1c5db1           6 ESGPGLVQPSQTLSLTCTVS-GFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNS   84 (117)
T ss_dssp             EECCSEECTTSCEEEEEEEC-SSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCeEEEEEEc-CCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccc
Confidence            34667788899999999964 332  246778763  22210              0113466666543     599999


Q ss_pred             eeecCCeeeEEEEe
Q psy14896        358 LEQIDAGNYSCNVQ  371 (813)
Q Consensus       358 v~~~D~G~Y~C~a~  371 (813)
                      ++.+|++.|.|...
T Consensus        85 L~~eDtAvYYCAr~   98 (117)
T d1c5db1          85 LQTEDTAIYFCTRE   98 (117)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             cccCcceEEEEecc
Confidence            99999999999654

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=96.25  E-value=0.0045  Score=49.58  Aligned_cols=63  Identities=21%  Similarity=0.416  Sum_probs=42.2

Q ss_pred             cCCCCCCeEEEEEEecCCC----CCeEEEEeC--CcccC-------CCc---------eee--e----cceEEEECCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYP----VPSYNWTRR--GSPLP-------RNA---------YFE--N----FNRILTIPNVKV  733 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P----~p~i~W~k~--g~~l~-------~~~---------~~~--~----~~~~L~i~~v~~  733 (813)
                      ..+++|++++|+|.++|..    ...+.|+|.  |+.+.       .+.         ++.  .    ....|.|.+++.
T Consensus        10 ~lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~~   89 (126)
T d1etzb1          10 GILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVDT   89 (126)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceecccc
Confidence            4567899999999998753    235679863  33321       111         111  1    123599999999


Q ss_pred             CCCEEEEEEEE
Q psy14896        734 EDQGEYICRAS  744 (813)
Q Consensus       734 ~d~G~Y~C~a~  744 (813)
                      +|++.|.|...
T Consensus        90 eDtAvYyCAr~  100 (126)
T d1etzb1          90 SDTATYHCARR  100 (126)
T ss_dssp             GGCEEEEEEEE
T ss_pred             cccceEEEEEe
Confidence            99999999754

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.25  E-value=0.0034  Score=49.63  Aligned_cols=64  Identities=23%  Similarity=0.497  Sum_probs=43.5

Q ss_pred             cCCCCCCeEEEEEEecCCCC--CeEEEEeC--Cccc------CCC-c----------ee--ee----cceEEEECCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYPV--PSYNWTRR--GSPL------PRN-A----------YF--EN----FNRILTIPNVKVE  734 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~--p~i~W~k~--g~~l------~~~-~----------~~--~~----~~~~L~i~~v~~~  734 (813)
                      ..++.|++++|+|.++|+.-  -.+.|+|.  |+.|      ..+ .          ++  ..    ....|.|.+++.+
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~e   89 (121)
T d1ol0a_          10 GLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRAE   89 (121)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeecccc
Confidence            45678999999999998653  35889873  4432      111 0          11  11    1135999999999


Q ss_pred             CCEEEEEEEEc
Q psy14896        735 DQGEYICRASN  745 (813)
Q Consensus       735 d~G~Y~C~a~N  745 (813)
                      |++.|.|....
T Consensus        90 DtAvYYCAr~~  100 (121)
T d1ol0a_          90 DTAVYYCAREP  100 (121)
T ss_dssp             GCEEEEEEECC
T ss_pred             cceEEEEEEec
Confidence            99999997543

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.23  E-value=0.0038  Score=49.65  Aligned_cols=64  Identities=27%  Similarity=0.492  Sum_probs=44.1

Q ss_pred             cCCCCCCeEEEEEEecCCCCC--eEEEEeC--Cccc-------CCCc----------ee--ee----cceEEEECCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYPVP--SYNWTRR--GSPL-------PRNA----------YF--EN----FNRILTIPNVKVE  734 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p--~i~W~k~--g~~l-------~~~~----------~~--~~----~~~~L~i~~v~~~  734 (813)
                      ..++.|++++|+|.++|+.--  .+.|+|.  |+.|       ..+.          ++  ..    ..-.|.|.+++.+
T Consensus        10 ~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~~e   89 (128)
T d2nxyd1          10 EVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRSD   89 (128)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeecccc
Confidence            456889999999999997643  5788873  3322       1111          11  11    1234999999999


Q ss_pred             CCEEEEEEEEc
Q psy14896        735 DQGEYICRASN  745 (813)
Q Consensus       735 d~G~Y~C~a~N  745 (813)
                      |++.|.|....
T Consensus        90 DTA~YYCAr~~  100 (128)
T d2nxyd1          90 DTAVYFCAGVY  100 (128)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CceEEEEeEEe
Confidence            99999998754

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.23  E-value=0.0041  Score=49.59  Aligned_cols=64  Identities=25%  Similarity=0.511  Sum_probs=44.0

Q ss_pred             cCCCCCCeEEEEEEecCCCC--CeEEEEeC--Cccc------C-CC-c---------eee------ecceEEEECCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYPV--PSYNWTRR--GSPL------P-RN-A---------YFE------NFNRILTIPNVKVE  734 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~--p~i~W~k~--g~~l------~-~~-~---------~~~------~~~~~L~i~~v~~~  734 (813)
                      ..++.|++++|+|.++|+.-  -.+.|+|.  |+.|      . .+ .         ++.      .....|.|.+++.+
T Consensus        10 ~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~e   89 (135)
T d1ieha_          10 GLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKSE   89 (135)
T ss_dssp             CEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCSS
T ss_pred             ceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCcc
Confidence            45688999999999998653  36889873  3322      1 11 1         111      11235999999999


Q ss_pred             CCEEEEEEEEc
Q psy14896        735 DQGEYICRASN  745 (813)
Q Consensus       735 d~G~Y~C~a~N  745 (813)
                      |++.|.|....
T Consensus        90 DTAvYYCAr~~  100 (135)
T d1ieha_          90 DTAVYYCAKYS  100 (135)
T ss_dssp             SCEEEEEEEBS
T ss_pred             cceeeEEEEec
Confidence            99999997654

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.23  E-value=0.0053  Score=49.49  Aligned_cols=23  Identities=17%  Similarity=0.388  Sum_probs=20.4

Q ss_pred             cEEEEeecccCCeeEEEEEEeee
Q psy14896        625 ALYFSALEQIDAGNYSCNVQSKV  647 (813)
Q Consensus       625 ~L~i~~~~~~d~G~Y~C~a~n~~  647 (813)
                      +|+|.++..+|+|.|.|.+....
T Consensus        78 ~L~I~~l~~~DsavYyCa~~~~~  100 (118)
T d1yjdc1          78 TFYLQNLYVNQTDIYFCKIEVMY  100 (118)
T ss_dssp             EEEEESCCGGGCEEEEEEEEEEE
T ss_pred             EEEECCCCcccCeEEEEEEeccc
Confidence            49999999999999999886654

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.22  E-value=0.0044  Score=49.99  Aligned_cols=64  Identities=20%  Similarity=0.441  Sum_probs=43.3

Q ss_pred             cCCCCCCeEEEEEEecCCCC----CeEEEEeC--CcccC-------CC---------ceee--ec----ceEEEECCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYPV----PSYNWTRR--GSPLP-------RN---------AYFE--NF----NRILTIPNVKV  733 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~----p~i~W~k~--g~~l~-------~~---------~~~~--~~----~~~L~i~~v~~  733 (813)
                      ..+++|++++|+|.++|...    .-+.|+|.  |+.+.       .+         .++.  .+    .-.|.|.+++.
T Consensus        10 ~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~~   89 (132)
T d1tjgh1          10 PLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVSP   89 (132)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCCc
Confidence            45788999999999987652    35889973  33221       00         1111  11    13499999999


Q ss_pred             CCCEEEEEEEEc
Q psy14896        734 EDQGEYICRASN  745 (813)
Q Consensus       734 ~d~G~Y~C~a~N  745 (813)
                      +|++.|.|....
T Consensus        90 eDtAvYYCAr~~  101 (132)
T d1tjgh1          90 VDTATYFCAHRR  101 (132)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             ccceEEEEEEec
Confidence            999999997653

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.0051  Score=48.50  Aligned_cols=62  Identities=15%  Similarity=0.358  Sum_probs=43.2

Q ss_pred             CCeEEEEEEecCC-CC-CeEEEEeCCcccCCCcee-----e------ecceEEEECCCCCCCCEEEEEEEEcCCC
Q psy14896        687 GDKVRLECVAFGY-PV-PSYNWTRRGSPLPRNAYF-----E------NFNRILTIPNVKVEDQGEYICRASNDRS  748 (813)
Q Consensus       687 G~~v~l~C~~~g~-P~-p~i~W~k~g~~l~~~~~~-----~------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G  748 (813)
                      ++.++|.|.+.|+ |. ..|+|++||..+......     .      ...+.|.|..-..+....|+|++.+...
T Consensus        20 ~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~~   94 (107)
T d1c5cl2          20 SGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGL   94 (107)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTC
T ss_pred             CCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECCC
Confidence            5689999999985 54 489999999877644321     1      1134577766555555689999998643

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.21  E-value=0.0042  Score=49.15  Aligned_cols=64  Identities=22%  Similarity=0.477  Sum_probs=43.6

Q ss_pred             cCCCCCCeEEEEEEecCCCC--CeEEEEeC--Cccc------C-CC-c---------ee--e----ecceEEEECCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYPV--PSYNWTRR--GSPL------P-RN-A---------YF--E----NFNRILTIPNVKVE  734 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~--p~i~W~k~--g~~l------~-~~-~---------~~--~----~~~~~L~i~~v~~~  734 (813)
                      ..++.|++++|+|.++|..-  -.+.|+|-  |+.+      . .+ .         ++  .    .....|.|.+++.+
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~e   89 (122)
T d1bz7b1          10 GLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRSE   89 (122)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeeccc
Confidence            44678999999999998763  36899883  3322      1 11 0         11  1    11135999999999


Q ss_pred             CCEEEEEEEEc
Q psy14896        735 DQGEYICRASN  745 (813)
Q Consensus       735 d~G~Y~C~a~N  745 (813)
                      |++.|.|...+
T Consensus        90 DTAvYYCAr~~  100 (122)
T d1bz7b1          90 DTAIYYCTRGG  100 (122)
T ss_dssp             GCEEEEEEEEC
T ss_pred             CceEEEeecCC
Confidence            99999997654

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=96.20  E-value=0.0048  Score=48.28  Aligned_cols=72  Identities=17%  Similarity=0.281  Sum_probs=47.2

Q ss_pred             CCCCceeecCCCeEEEecCCC-CCCcceEEEeec--cccc------c--------ccCCccEEEccCc-----cEEEeee
Q psy14896        301 KRAPEIGNQNWGKAMFCDPPT-NYPGVNYYWARD--YFPN------F--------VEEDKRVFVSYDG-----ALYFSAL  358 (813)
Q Consensus       301 ~~~~~~~~~~~~~~l~C~~~~-~~p~~~v~W~k~--~~~~------~--------~~~~~~~~~~~~~-----~L~i~~v  358 (813)
                      +..+..+..|+.++|.|.+.. ....--+.|+|-  |+.+      .        ..-..|+.+..|.     .|+|.++
T Consensus         6 eSG~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L   85 (116)
T d7fabh1           6 QSGPGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSV   85 (116)
T ss_dssp             EECCSEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             eECCceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhcccccc
Confidence            345667788999999999632 123356778862  2211      0        1113466665532     5999999


Q ss_pred             eecCCeeeEEEEee
Q psy14896        359 EQIDAGNYSCNVQS  372 (813)
Q Consensus       359 ~~~D~G~Y~C~a~n  372 (813)
                      +.+|++.|.|....
T Consensus        86 ~~eDtAvYyCAr~~   99 (116)
T d7fabh1          86 TAADTAVYYCARNL   99 (116)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             ccccceEEEeeeec
Confidence            99999999997643

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.20  E-value=0.0025  Score=44.93  Aligned_cols=54  Identities=20%  Similarity=0.413  Sum_probs=35.5

Q ss_pred             ccEEEEeeeccCCC--CeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEee
Q psy14896        210 NDITLSCYAGGYPN--PSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKAS  277 (813)
Q Consensus       210 ~~v~l~C~~~g~P~--p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~  277 (813)
                      ..++|.|.....+.  ---.|.|+|++|.+..      ..+...     .+.| .  ..+|+|.|.|+--
T Consensus        13 sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~------~~~~~t-----ey~V-~--~~D~SGeY~CVFl   68 (80)
T d3b5ha2          13 SKILLTCSLNDSATEVTGHRWLKGGVVLKEDA------LPGQKT-----EFKV-D--SDDQWGEYSCVFL   68 (80)
T ss_dssp             TEEEEEEEEESCSSCCCEEEEESSSEEEECTT------CCCSEE-----EEEE-C--GGGCCEEEEEEEE
T ss_pred             CCEEEEEECCCCCCceeeeEEeeCCEEccccC------CCCCce-----EEEE-e--cCCCCceEEEEEc
Confidence            56999999976433  3678999999885421      222211     1233 2  3789999999965

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.20  E-value=0.0038  Score=48.80  Aligned_cols=66  Identities=26%  Similarity=0.438  Sum_probs=39.5

Q ss_pred             cccEEEEeeeccCC--CCeEEEeec--ccccccc------c-ccccccCCCccEEee----CC--eEEEcCCccccCCee
Q psy14896        209 LNDITLSCYAGGYP--NPSYEWFKE--DYVQDRL------V-ANLIDPLSDKRFTLS----GG--NLIINDPRQVEDRGS  271 (813)
Q Consensus       209 g~~v~l~C~~~g~P--~p~v~W~k~--g~~l~~~------~-~~~~~~~~~~~~~~~----~~--~l~i~~~~~~~d~G~  271 (813)
                      |++++|.|+++|..  .-.+.|+|.  |+.++=.      . .....+.-..|+++.    ..  .|.+.+. +.+|++.
T Consensus        15 G~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L-~~eDtAv   93 (118)
T d1nlbh1          15 GETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSL-KNEDTAT   93 (118)
T ss_dssp             TCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSC-CGGGCEE
T ss_pred             CCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeec-ccCcceE
Confidence            48899999999854  346899985  3322110      0 011222223455554    12  2566664 8999999


Q ss_pred             EEEE
Q psy14896        272 YHCK  275 (813)
Q Consensus       272 Y~C~  275 (813)
                      |.|.
T Consensus        94 YYCA   97 (118)
T d1nlbh1          94 YFCA   97 (118)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9994

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=96.20  E-value=0.0036  Score=48.20  Aligned_cols=64  Identities=30%  Similarity=0.549  Sum_probs=43.7

Q ss_pred             cCCCCCCeEEEEEEecCCCCC--eEEEEeC--Cccc------CCC----c---------eee--e----cceEEEECCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYPVP--SYNWTRR--GSPL------PRN----A---------YFE--N----FNRILTIPNVK  732 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p--~i~W~k~--g~~l------~~~----~---------~~~--~----~~~~L~i~~v~  732 (813)
                      ..++.|++++|+|.++|..-.  .+.|+|.  |+.+      ..+    .         ++.  .    ..-.|.|.+++
T Consensus        10 ~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~sL~   89 (109)
T d2ck0h1          10 GLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNNLK   89 (109)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccCCC
Confidence            457889999999999986643  6889873  3322      110    0         111  1    11359999999


Q ss_pred             CCCCEEEEEEEEc
Q psy14896        733 VEDQGEYICRASN  745 (813)
Q Consensus       733 ~~d~G~Y~C~a~N  745 (813)
                      .+|++.|.|.-.+
T Consensus        90 ~eDTAvYYCAr~~  102 (109)
T d2ck0h1          90 TEDTGIYYCVRGR  102 (109)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             HhHCEEEEEEEcC
Confidence            9999999997543

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.20  E-value=0.005  Score=49.01  Aligned_cols=64  Identities=25%  Similarity=0.435  Sum_probs=43.2

Q ss_pred             cCCCCCCeEEEEEEecCCCC--CeEEEEeC--Cccc------C-CC-c---------ee--ee----cceEEEECCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYPV--PSYNWTRR--GSPL------P-RN-A---------YF--EN----FNRILTIPNVKVE  734 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~--p~i~W~k~--g~~l------~-~~-~---------~~--~~----~~~~L~i~~v~~~  734 (813)
                      ..++.|++++|+|.++|..-  -.+.|+|.  |+.|      . .+ .         ++  ..    ....|.|.+++.+
T Consensus         9 ~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~e   88 (126)
T d1rjca1           9 GSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKPE   88 (126)
T ss_dssp             EEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCcc
Confidence            55788999999999998653  36899883  4332      1 11 1         11  11    1124999999999


Q ss_pred             CCEEEEEEEEc
Q psy14896        735 DQGEYICRASN  745 (813)
Q Consensus       735 d~G~Y~C~a~N  745 (813)
                      |++.|.|....
T Consensus        89 DTAvYYCAr~~   99 (126)
T d1rjca1          89 DTAMYYCAADT   99 (126)
T ss_dssp             GCEEEEEEECC
T ss_pred             cCceeEEEeec
Confidence            99999997643

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=96.19  E-value=0.0037  Score=49.60  Aligned_cols=65  Identities=26%  Similarity=0.550  Sum_probs=44.3

Q ss_pred             cCCCCCCeEEEEEEecCCCC--CeEEEEeC--Cccc------C-CCc----------ee--ee----cceEEEECCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYPV--PSYNWTRR--GSPL------P-RNA----------YF--EN----FNRILTIPNVKVE  734 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~--p~i~W~k~--g~~l------~-~~~----------~~--~~----~~~~L~i~~v~~~  734 (813)
                      ..++.|++++|+|.++|..-  -.+.|+|.  |+.|      . .+.          ++  ..    ....|.|.+++.+
T Consensus        10 ~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~e   89 (126)
T d1dfbh1          10 GLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAE   89 (126)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeeccC
Confidence            45688999999999998763  36889883  3322      1 111          11  11    1135999999999


Q ss_pred             CCEEEEEEEEcC
Q psy14896        735 DQGEYICRASND  746 (813)
Q Consensus       735 d~G~Y~C~a~N~  746 (813)
                      |++.|.|.....
T Consensus        90 DtavYYCAr~~~  101 (126)
T d1dfbh1          90 DMALYYCVKGRD  101 (126)
T ss_dssp             GCEEEEEEEEEC
T ss_pred             cceEEEEEeccC
Confidence            999999976543

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.19  E-value=0.0061  Score=47.91  Aligned_cols=69  Identities=20%  Similarity=0.351  Sum_probs=41.8

Q ss_pred             ccccEEEEeeeccCC--CCeEEEeec--ccccccc-------cccccccCCCccEEee----CC--eEEEcCCccccCCe
Q psy14896        208 ILNDITLSCYAGGYP--NPSYEWFKE--DYVQDRL-------VANLIDPLSDKRFTLS----GG--NLIINDPRQVEDRG  270 (813)
Q Consensus       208 ~g~~v~l~C~~~g~P--~p~v~W~k~--g~~l~~~-------~~~~~~~~~~~~~~~~----~~--~l~i~~~~~~~d~G  270 (813)
                      .|++++|.|+++|..  .-.+.|+|.  |+.++-.       ......+.-..|+++.    ..  .|.+.+. +.+|++
T Consensus        14 pg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL-~~eDTA   92 (119)
T d1rz7h1          14 PGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSL-RSEDTA   92 (119)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSC-CGGGCE
T ss_pred             CCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeecc-Ccccce
Confidence            348899999999854  346899985  2222110       0012222333466553    22  2566664 899999


Q ss_pred             eEEEEee
Q psy14896        271 SYHCKAS  277 (813)
Q Consensus       271 ~Y~C~a~  277 (813)
                      .|.|...
T Consensus        93 vYYCAr~   99 (119)
T d1rz7h1          93 VYYCAAD   99 (119)
T ss_dssp             EEEEEEC
T ss_pred             EEEEeec
Confidence            9999654

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.19  E-value=0.011  Score=46.78  Aligned_cols=70  Identities=17%  Similarity=0.294  Sum_probs=45.9

Q ss_pred             CCCceeecCCCeEEEecCCC---CCCcceEEEeec--cccccc--------------cCCccEEEccCc-----cEEEee
Q psy14896        302 RAPEIGNQNWGKAMFCDPPT---NYPGVNYYWARD--YFPNFV--------------EEDKRVFVSYDG-----ALYFSA  357 (813)
Q Consensus       302 ~~~~~~~~~~~~~l~C~~~~---~~p~~~v~W~k~--~~~~~~--------------~~~~~~~~~~~~-----~L~i~~  357 (813)
                      ..+..+..|+.++|.|.+..   ..+...+.|+|-  |+.+..              .-..|+.+..+.     .|.|.+
T Consensus         7 sg~~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~   86 (120)
T d2agjh1           7 SGPTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTN   86 (120)
T ss_dssp             CCCSBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEES
T ss_pred             ECCeeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEe
Confidence            34556677999999998521   223356889963  222100              013466665542     599999


Q ss_pred             eeecCCeeeEEEEe
Q psy14896        358 LEQIDAGNYSCNVQ  371 (813)
Q Consensus       358 v~~~D~G~Y~C~a~  371 (813)
                      ++.+|++.|.|...
T Consensus        87 l~~eDsAvYyCAr~  100 (120)
T d2agjh1          87 LDPVDTATYYCART  100 (120)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             eeeccceEEeeEec
Confidence            99999999999754

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.17  E-value=0.0044  Score=48.92  Aligned_cols=64  Identities=23%  Similarity=0.499  Sum_probs=43.5

Q ss_pred             cCCCCCCeEEEEEEecCCCC--CeEEEEeC--Cccc------C-CC-c---------eee------ecceEEEECCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYPV--PSYNWTRR--GSPL------P-RN-A---------YFE------NFNRILTIPNVKVE  734 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~--p~i~W~k~--g~~l------~-~~-~---------~~~------~~~~~L~i~~v~~~  734 (813)
                      ..++.|++++|+|.++|..-  -.+.|+|-  |+.+      . .+ .         ++.      .....|.|.+++.+
T Consensus        10 ~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~e   89 (123)
T d1mqkh_          10 DLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKSE   89 (123)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeeccC
Confidence            45688999999999998763  35889873  3321      1 11 0         111      11124999999999


Q ss_pred             CCEEEEEEEEc
Q psy14896        735 DQGEYICRASN  745 (813)
Q Consensus       735 d~G~Y~C~a~N  745 (813)
                      |++.|.|....
T Consensus        90 DtAvYYCAr~~  100 (123)
T d1mqkh_          90 DTAMYYCVRHE  100 (123)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cccceeEEecC
Confidence            99999997654

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.16  E-value=0.0068  Score=48.48  Aligned_cols=69  Identities=28%  Similarity=0.413  Sum_probs=41.3

Q ss_pred             ccccEEEEeeeccCC--CCeEEEeec--ccccccc--c----------ccccccCCCccEEee----CC--eEEEcCCcc
Q psy14896        208 ILNDITLSCYAGGYP--NPSYEWFKE--DYVQDRL--V----------ANLIDPLSDKRFTLS----GG--NLIINDPRQ  265 (813)
Q Consensus       208 ~g~~v~l~C~~~g~P--~p~v~W~k~--g~~l~~~--~----------~~~~~~~~~~~~~~~----~~--~l~i~~~~~  265 (813)
                      +|++++|.|.++|..  .-.+.|+|.  |+.++-.  .          .....+.-..|+++.    ..  .|.|.+. +
T Consensus        14 pg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i~~l-~   92 (127)
T d1i3ua_          14 AGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQMNSL-K   92 (127)
T ss_dssp             TTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEECSC-C
T ss_pred             CCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEeeecc-c
Confidence            358899999999854  346899985  2222111  0          011122233455543    12  2566665 8


Q ss_pred             ccCCeeEEEEee
Q psy14896        266 VEDRGSYHCKAS  277 (813)
Q Consensus       266 ~~d~G~Y~C~a~  277 (813)
                      .+|++.|.|.+.
T Consensus        93 ~eDtAvYYCAr~  104 (127)
T d1i3ua_          93 PEDTAVYYCAAK  104 (127)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             ccceeEEEEEEE
Confidence            999999999865

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.15  E-value=0.0031  Score=50.09  Aligned_cols=62  Identities=24%  Similarity=0.522  Sum_probs=42.9

Q ss_pred             cCCCCCCeEEEEEEecCCCCC--eEEEEeC--Cccc------C-CC-c---------ee--ee----cceEEEECCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYPVP--SYNWTRR--GSPL------P-RN-A---------YF--EN----FNRILTIPNVKVE  734 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~p--~i~W~k~--g~~l------~-~~-~---------~~--~~----~~~~L~i~~v~~~  734 (813)
                      ..++.|++++|+|.++|+.--  .+.|+|.  |+.|      . .+ .         ++  ..    ....|.|.+++.+
T Consensus        10 ~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L~~e   89 (127)
T d1n0xh1          10 EVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSA   89 (127)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEccCCC
Confidence            457889999999999987643  6899883  4332      1 11 1         11  11    1234999999999


Q ss_pred             CCEEEEEEE
Q psy14896        735 DQGEYICRA  743 (813)
Q Consensus       735 d~G~Y~C~a  743 (813)
                      |++.|.|.-
T Consensus        90 DtAvYYCAR   98 (127)
T d1n0xh1          90 DTAVYYCAR   98 (127)
T ss_dssp             GCEEEEEEE
T ss_pred             CceEEEEEe
Confidence            999999963

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.14  E-value=0.0032  Score=50.28  Aligned_cols=64  Identities=23%  Similarity=0.435  Sum_probs=43.8

Q ss_pred             cCCCCCCeEEEEEEecCCCC--CeEEEEeC--Cccc------C-CCc----------ee--ee----cceEEEECCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYPV--PSYNWTRR--GSPL------P-RNA----------YF--EN----FNRILTIPNVKVE  734 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~--p~i~W~k~--g~~l------~-~~~----------~~--~~----~~~~L~i~~v~~~  734 (813)
                      ..++.|++++|+|.++|+.-  -.+.|+|.  |+-|      . .+.          ++  ..    ..-.|.|.+++.+
T Consensus        10 ~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~sL~~e   89 (130)
T d1rzga1          10 EVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSSLRSE   89 (130)
T ss_dssp             EEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeeecCCC
Confidence            45788999999999998753  36899883  3322      1 111          11  11    1124999999999


Q ss_pred             CCEEEEEEEEc
Q psy14896        735 DQGEYICRASN  745 (813)
Q Consensus       735 d~G~Y~C~a~N  745 (813)
                      |++.|.|....
T Consensus        90 DtA~YYCAr~~  100 (130)
T d1rzga1          90 DTAVFYCASPY  100 (130)
T ss_dssp             GCEEEEEEECC
T ss_pred             ccEEEEEEEec
Confidence            99999998643

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.13  E-value=0.0031  Score=50.30  Aligned_cols=64  Identities=22%  Similarity=0.431  Sum_probs=43.5

Q ss_pred             cCCCCCCeEEEEEEecCCCC--CeEEEEeC--Cccc------C-CCc----------ee--ee----cceEEEECCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYPV--PSYNWTRR--GSPL------P-RNA----------YF--EN----FNRILTIPNVKVE  734 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~--p~i~W~k~--g~~l------~-~~~----------~~--~~----~~~~L~i~~v~~~  734 (813)
                      ..++.|++++|+|.++|..-  -.+.|+|-  |+.|      . .+.          ++  ..    ..-.|.|.+++.+
T Consensus        10 ~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL~~e   89 (125)
T d1rihh1          10 ELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSLTSE   89 (125)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeeccCcc
Confidence            45688999999999998763  36888873  3322      1 111          11  11    1124999999999


Q ss_pred             CCEEEEEEEEc
Q psy14896        735 DQGEYICRASN  745 (813)
Q Consensus       735 d~G~Y~C~a~N  745 (813)
                      |++.|.|....
T Consensus        90 DtAvYYCAR~~  100 (125)
T d1rihh1          90 DSAVYYCARES  100 (125)
T ss_dssp             GCEEEEEEEEC
T ss_pred             cceEEEEeeeC
Confidence            99999997643

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.12  E-value=0.0042  Score=48.90  Aligned_cols=63  Identities=30%  Similarity=0.526  Sum_probs=42.7

Q ss_pred             cCCCCCCeEEEEEEecCCCC--CeEEEEeC--CcccC-------CC-c---------eee--e----cceEEEECCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYPV--PSYNWTRR--GSPLP-------RN-A---------YFE--N----FNRILTIPNVKVE  734 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~--p~i~W~k~--g~~l~-------~~-~---------~~~--~----~~~~L~i~~v~~~  734 (813)
                      ..++.|++++|+|.++|..-  -.+.|+|.  |+.|.       .+ .         ++.  .    ..-.|.|.+++.+
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~e   89 (121)
T d2p49b1          10 GLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKPE   89 (121)
T ss_dssp             EEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeecccc
Confidence            45678999999999998653  46889883  33221       11 0         111  1    1124999999999


Q ss_pred             CCEEEEEEEE
Q psy14896        735 DQGEYICRAS  744 (813)
Q Consensus       735 d~G~Y~C~a~  744 (813)
                      |++.|.|...
T Consensus        90 DtAvYYCAr~   99 (121)
T d2p49b1          90 DTATYYCAAG   99 (121)
T ss_dssp             GCEEEEEEES
T ss_pred             ceeEEeeecc
Confidence            9999999763

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=96.12  E-value=0.0047  Score=49.19  Aligned_cols=65  Identities=25%  Similarity=0.511  Sum_probs=43.9

Q ss_pred             cCCCCCCeEEEEEEecCCCC--CeEEEEeC--Cccc------C-CC-c---------ee--ee----cceEEEECCCCCC
Q psy14896        682 EAPKAGDKVRLECVAFGYPV--PSYNWTRR--GSPL------P-RN-A---------YF--EN----FNRILTIPNVKVE  734 (813)
Q Consensus       682 ~~~~~G~~v~l~C~~~g~P~--p~i~W~k~--g~~l------~-~~-~---------~~--~~----~~~~L~i~~v~~~  734 (813)
                      ..++.|++++|.|.++|..-  -.+.|+|-  |+.|      . .+ .         ++  ..    ....|.|.+++.+
T Consensus        10 ~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~~e   89 (127)
T d2fb4h1          10 GVVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLRPE   89 (127)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeeeec
Confidence            45678999999999998653  36888873  3322      1 11 1         11  00    1135999999999


Q ss_pred             CCEEEEEEEEcC
Q psy14896        735 DQGEYICRASND  746 (813)
Q Consensus       735 d~G~Y~C~a~N~  746 (813)
                      |++.|.|.....
T Consensus        90 DTA~YYCAr~~~  101 (127)
T d2fb4h1          90 DTGVYFCARDGG  101 (127)
T ss_dssp             GCEEEEEEEECS
T ss_pred             ceeEEEEEEecC
Confidence            999999976543

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.11  E-value=0.0074  Score=47.86  Aligned_cols=71  Identities=24%  Similarity=0.413  Sum_probs=41.9

Q ss_pred             cccccEEEEeeeccCC--CCeEEEeecc--cccccc-------cccccccCCCccEEee----CC--eEEEcCCccccCC
Q psy14896        207 SILNDITLSCYAGGYP--NPSYEWFKED--YVQDRL-------VANLIDPLSDKRFTLS----GG--NLIINDPRQVEDR  269 (813)
Q Consensus       207 ~~g~~v~l~C~~~g~P--~p~v~W~k~g--~~l~~~-------~~~~~~~~~~~~~~~~----~~--~l~i~~~~~~~d~  269 (813)
                      +.|++++|.|+++|..  .-.+.|+|.-  +.++=.       ......+.-..|+++.    ..  .|.+.+. +.+|+
T Consensus        12 kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL-~~eDt   90 (124)
T d1zvya1          12 QAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSV-KSEDT   90 (124)
T ss_dssp             CTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSC-CGGGC
T ss_pred             CCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccc-cCCcc
Confidence            3458899999999854  3478999853  322110       0011112223455543    12  2555564 89999


Q ss_pred             eeEEEEeec
Q psy14896        270 GSYHCKASN  278 (813)
Q Consensus       270 G~Y~C~a~n  278 (813)
                      +.|.|....
T Consensus        91 AvYYCAr~~   99 (124)
T d1zvya1          91 AIYTCGATR   99 (124)
T ss_dssp             EEEEEEECS
T ss_pred             eEEEEeecc
Confidence            999997653

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.10  E-value=0.0073  Score=47.48  Aligned_cols=68  Identities=28%  Similarity=0.506  Sum_probs=40.7

Q ss_pred             cccEEEEeeeccCC--CCeEEEeec--cccccccc-------ccccccCCCccEEee----CC--eEEEcCCccccCCee
Q psy14896        209 LNDITLSCYAGGYP--NPSYEWFKE--DYVQDRLV-------ANLIDPLSDKRFTLS----GG--NLIINDPRQVEDRGS  271 (813)
Q Consensus       209 g~~v~l~C~~~g~P--~p~v~W~k~--g~~l~~~~-------~~~~~~~~~~~~~~~----~~--~l~i~~~~~~~d~G~  271 (813)
                      |++++|.|.++|..  .--+.|+|.  |+.++=..       .....+.-..|+++.    ..  .|.|.+. +.+|++.
T Consensus        15 g~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L-~~eDtAv   93 (121)
T d2p49b1          15 GGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSL-KPEDTAT   93 (121)
T ss_dssp             TCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSC-CGGGCEE
T ss_pred             CCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeec-cccceeE
Confidence            48899999999853  446889985  33222110       011122223456554    12  2566664 8999999


Q ss_pred             EEEEee
Q psy14896        272 YHCKAS  277 (813)
Q Consensus       272 Y~C~a~  277 (813)
                      |.|...
T Consensus        94 YYCAr~   99 (121)
T d2p49b1          94 YYCAAG   99 (121)
T ss_dssp             EEEEES
T ss_pred             Eeeecc
Confidence            999754

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.10  E-value=0.0059  Score=47.45  Aligned_cols=68  Identities=25%  Similarity=0.460  Sum_probs=41.3

Q ss_pred             ccccEEEEeeeccCC--CCeEEEeecc--cccccc-------cccccccCCCccEEee----CCe--EEEcCCccccCCe
Q psy14896        208 ILNDITLSCYAGGYP--NPSYEWFKED--YVQDRL-------VANLIDPLSDKRFTLS----GGN--LIINDPRQVEDRG  270 (813)
Q Consensus       208 ~g~~v~l~C~~~g~P--~p~v~W~k~g--~~l~~~-------~~~~~~~~~~~~~~~~----~~~--l~i~~~~~~~d~G  270 (813)
                      .|++++|.|.++|..  .-.+.|+|.-  +.++=.       ......+.-..|+++.    ..+  |.|.+. +.+|++
T Consensus        14 pG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L-~~eDtA   92 (114)
T d1indh1          14 PGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSL-RSEDTA   92 (114)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSC-CGGGCE
T ss_pred             CCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeee-ccCccc
Confidence            458899999999854  3468899853  322110       0112222333466654    122  566664 899999


Q ss_pred             eEEEEe
Q psy14896        271 SYHCKA  276 (813)
Q Consensus       271 ~Y~C~a  276 (813)
                      .|.|..
T Consensus        93 vYYCA~   98 (114)
T d1indh1          93 LYFCAS   98 (114)
T ss_dssp             EEEEEC
T ss_pred             EEEECC
Confidence            999964

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=96.09  E-value=0.0028  Score=47.38  Aligned_cols=71  Identities=18%  Similarity=0.201  Sum_probs=0.0

Q ss_pred             cCCCceeccCCCceEEeCCCCCCCc-cEEEEccCCCCCcccCCCeEEEeeCcc-EEEEeecccCCeeEEEEEEee
Q psy14896        574 KRAPEIGNQNWGKAMFCDPPTNYPG-VNYYWARDYFPNFVEEDKRVFVSYDGA-LYFSALEQIDAGNYSCNVQSK  646 (813)
Q Consensus       574 ~~~~~~~~~g~~~~l~C~~~~~~p~-~~v~W~k~~~~~~~~~~~~~~~~~~~~-L~i~~~~~~d~G~Y~C~a~n~  646 (813)
                      ...|........++|.|.+.+-+|. ..|+|.++|..  ...........+|+ ..+.-+.......|+|.+.+.
T Consensus         4 p~~PsV~~l~~~~tl~Cl~~gF~P~~i~v~W~~~g~~--~~~~~~~~~~~~gtys~~s~~~~~~~~~yTC~V~H~   76 (86)
T d1hxma2           4 HTKPSVFVMKNGTNVACLVKEFYPKDIRINLVSSKKI--TEFDPAIVISPSGKYNAVKLGKYEDSNSVTCSVQHD   76 (86)
T ss_dssp             CBCCEEEEEEETTEEEEEEESCBSSCCEEEEECSSEE--EECCCEEEECTTSSEEEEEEEEETTTTTCEEEEEET
T ss_pred             CCCCEEEEcCCCCEEEEEEeeEECCCCEEEEEECCEE--ccCcEEeeeccCCcEEEEEEEecCCCCEEEEEEEEC

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.09  E-value=0.012  Score=46.77  Aligned_cols=91  Identities=16%  Similarity=0.136  Sum_probs=56.3

Q ss_pred             CCCceeecCCCeEEEecCCCC-CCcceEEEeec--ccccc------c---------cCCccEEEccCc-----cEEEeee
Q psy14896        302 RAPEIGNQNWGKAMFCDPPTN-YPGVNYYWARD--YFPNF------V---------EEDKRVFVSYDG-----ALYFSAL  358 (813)
Q Consensus       302 ~~~~~~~~~~~~~l~C~~~~~-~p~~~v~W~k~--~~~~~------~---------~~~~~~~~~~~~-----~L~i~~v  358 (813)
                      ..+..+..|+.++|.|.+.+. ....-+.|+|-  |+.+.      .         .-..|+.++.|.     .|.|.++
T Consensus         7 SG~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L   86 (135)
T d1ieha_           7 SGGGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSL   86 (135)
T ss_dssp             ECCCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESC
T ss_pred             ECCceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeee
Confidence            456677889999999996321 12355778752  22210      0         113566666543     4999999


Q ss_pred             eecCCeeeEEEEeeeccccCCCCCceeeEEccCCc
Q psy14896        359 EQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSN  393 (813)
Q Consensus       359 ~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~  393 (813)
                      +.+|++.|.|......+ ...-..-..|+|.....
T Consensus        87 ~~eDTAvYYCAr~~~~~-~d~WGqGT~VTVsSas~  120 (135)
T d1ieha_          87 KSEDTAVYYCAKYSGGA-LDAWGQGTQVTVSSQSE  120 (135)
T ss_dssp             CSSSCEEEEEEEBSSSS-BCCCSCCEEEEECSSCC
T ss_pred             CcccceeeEEEEecCCc-cceeCCCEEEEEECCCC
Confidence            99999999997654322 11224446777766543