Psyllid ID: psy14904

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230---
Protein Sequence
MINKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNINLISHYLDFSSLF
Secondary Structure (PSIPRED)
ccccccccEEEEEcccccHHHHHHHHHHHHHHHccccEEEEcEEEcccccccccccccHHHHHHHHHHcccccccccccccccccccccHHHHHHHccccccHHHHHHHHHHHHcccccEEEEccccccccccccccHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHHHccccEEEEEEEcccccccHHHHHHHHHHHHHcccccEEEccccccccHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccHcEEEEEEccccccHHHHHHHHHHHHHHccccEEEEccEEEcccccccccccccHHHHHHHHHccccccHHHcHccEEEcccccHHHHHHHHcccccHHHHHHHHHHHHccccEEEEEcccccccEcccccEHHHHHHHHcccEEEEEEccccHHHHHHHHHHHHHHccccEEEEEEEccccccHHHHHHHHHHHHHHcccccccEccccccccHHHHHHHccHHHcc
Coil and Loop (DISEMBL)
MINKNFLHYFITGTNTNIGKTIISCALLSEFKKRgiscigmkpiasgaylnnknkiwfnEDVNLLNKYSNSLYEFTKLinpylfkypispytssnlenriiNTSHIINCYNYLSNLTDVIILegiggfsvpfhdnensaDLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYlnvtplgripylYNLNINLISHyldfsslf
Flexible Loop (DISEMBL)
MINKNFLHYFItgtntnigKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNINLISHYLDFSSLF
Low Complexity Region (SEG)
MINKNFLHYFitgtntnigktiiSCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNINLISHYLDFSSLF
Disordered region (IsUnstruct)
****NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNINLISHYLDF****
Disordered Region (DISOPRED)
****NFL*YFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNINLISHYLDFSSLF
Disordered Region (DISEMBL)
MINKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNINLISHYLDFSSLF
Disordered Region (DISPRO)
***KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNINLISHYLDFSSLF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MINKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNINLISHYLDFSSLF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	233	2.2.26 [Sep-21-2011]
A9AE45	239	ATP-dependent dethiobioti	yes	N/A	0.952	0.928	0.378	2e-46
Q5NZF8	225	ATP-dependent dethiobioti	yes	N/A	0.918	0.951	0.386	7e-45
A6SU65	236	ATP-dependent dethiobioti	yes	N/A	0.948	0.936	0.4	4e-44
B4E9L5	239	ATP-dependent dethiobioti	yes	N/A	0.952	0.928	0.378	1e-40
Q39CE5	239	ATP-dependent dethiobioti	yes	N/A	0.952	0.928	0.386	4e-39
B2UBJ4	235	ATP-dependent dethiobioti	yes	N/A	0.935	0.927	0.362	3e-38
Q2Y9Y5	226	ATP-dependent dethiobioti	yes	N/A	0.927	0.955	0.375	5e-38
A4JIB6	239	ATP-dependent dethiobioti	yes	N/A	0.952	0.928	0.369	1e-37
A3N521	240	ATP-dependent dethiobioti	yes	N/A	0.935	0.908	0.384	7e-36
Q3JWR7	240	ATP-dependent dethiobioti	yes	N/A	0.935	0.908	0.384	7e-36

>sp|A9AE45|BIOD_BURM1 ATP-dependent dethiobiotin synthetase BioD OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=bioD PE=3 SV=1

 Score =  186 bits (471), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 87/230 (37%), Positives = 143/230 (62%), Gaps = 8/230 (3%)

Query: 7   LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLN 66
           L  F+TGT+T IGKT +S ALL  F + G+    MKP+A+GAY   ++ +W NED + L+
Sbjct: 5   LSLFVTGTDTEIGKTFVSAALLHGFARHGLRAAAMKPVAAGAY--ERDGVWRNEDADQLD 62

Query: 67  KYSNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIG 126
             ++ +    +L  P+L K P +P+  +  E+  ++   I+ C+       D++++EG+G
Sbjct: 63  AAASVVLP-PELRTPFLLKAPAAPHIVAAHEHVTLDIDTIVACHRDALTRADIVVVEGVG 121

Query: 127 GFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ 186
           GF VP +D +++ADLA  LGLP++LV+ +++GCI++ALL+ +AI +RGL L GWVANH  
Sbjct: 122 GFRVPLNDTQDTADLAVALGLPVVLVVGMRLGCISHALLTADAIAARGLTLAGWVANHVD 181

Query: 187 IVDTLFANENYIELTKYL---NVTP-LGRIPYLYNLNINLISHYLDFSSL 232
              T +A+EN   +  +L   +  P LGRI ++   +    +  LD ++L
Sbjct: 182 PAMT-YADENVATIRDWLAREHRAPLLGRIAHMAPADPESAAATLDIAAL 230

Catalyzes a mechanistically unusual reaction, the ATP-dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring.
Burkholderia multivorans (strain ATCC 17616 / 249) (taxid: 395019)
EC: 6EC: .EC: 3EC: .EC: 3EC: .EC: 3

>sp|Q5NZF8|BIOD_AROAE ATP-dependent dethiobiotin synthetase BioD OS=Aromatoleum aromaticum (strain EbN1) GN=bioD PE=3 SV=1

 Score =  180 bits (457), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 85/220 (38%), Positives = 137/220 (62%), Gaps = 6/220 (2%)

Query: 9   YFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGA-YLNNKNKIWFNEDVNLLNK 67
           +F+ GT+T IGKT ++CALL   ++ G S +GMKP+A+GA ++  +   W NED   L +
Sbjct: 7   WFLAGTDTEIGKTFVACALLHAARRDGRSALGMKPVAAGAEWIAGE---WLNEDAAQL-R 62

Query: 68  YSNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGG 127
            ++S       +NPY  K P++P+ ++  E   I+ + I   +  L    DV+I+EG+GG
Sbjct: 63  AASSFDPGLDRLNPYCLKTPVAPHIAAAEEGVEIDPARIRAAFESLRAQADVVIVEGVGG 122

Query: 128 FSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQI 187
           F VP  D  ++ADLA +LGLP+ILV+ +++GCI++ALL++EAI +RGL L GW+AN    
Sbjct: 123 FRVPLGDRYDTADLARELGLPVILVVGMRLGCISHALLTVEAIAARGLTLAGWIANRIDP 182

Query: 188 VDTLFANENYIELTKYLNVTPLGRIPYLYNLNINLISHYL 227
              L A+EN   L + ++   LG +P++   +   ++  L
Sbjct: 183 A-MLRADENLEALRRRIDAPLLGVVPHVAGADPAQVAASL 221

Catalyzes a mechanistically unusual reaction, the ATP-dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring.

Aromatoleum aromaticum (strain EbN1) (taxid: 76114)

EC: 6

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 3

>sp|A6SU65|BIOD_JANMA ATP-dependent dethiobiotin synthetase BioD OS=Janthinobacterium sp. (strain Marseille) GN=bioD PE=3 SV=1

 Score =  177 bits (450), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 90/225 (40%), Positives = 140/225 (62%), Gaps = 4/225 (1%)

Query: 10  FITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYL--NNKNKIWFNEDVNLLNK 67
           F+TGT+T IGKT+IS ALL    ++G+    +K +A+GA     N+ ++W N+D + L +
Sbjct: 8   FVTGTDTEIGKTMISTALLHALVQQGVKAAAIKSVAAGATAIQTNEGEVWHNDDADALAQ 67

Query: 68  YSNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGG 127
            +N +    +L  PYL     +P+ S+ L+   I+ +HI NCY  +  + + +++EG+GG
Sbjct: 68  AANVVLP-RELATPYLLHEACAPHVSAELQGVAIDIAHIKNCYVQVREMAEAVVVEGVGG 126

Query: 128 FSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQI 187
           F VP  D+ ++ADLA +L LP+I+V+ L++GC+N+ALL+ +AI +RGLKL+GWVAN T  
Sbjct: 127 FRVPLSDHADTADLARELALPVIMVVGLRLGCLNHALLTADAIAARGLKLVGWVAN-TVD 185

Query: 188 VDTLFANENYIELTKYLNVTPLGRIPYLYNLNINLISHYLDFSSL 232
               FA +N   L   L+   LG +P L        + YLDFS L
Sbjct: 186 AGMPFAEDNVAALAARLSAPLLGCVPRLAAPLPAAAAAYLDFSCL 230

Catalyzes a mechanistically unusual reaction, the ATP-dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring.

Janthinobacterium sp. (strain Marseille) (taxid: 375286)

EC: 6

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 3

>sp|B4E9L5|BIOD_BURCJ ATP-dependent dethiobiotin synthetase BioD OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=bioD PE=3 SV=1

 Score =  166 bits (420), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 87/230 (37%), Positives = 140/230 (60%), Gaps = 8/230 (3%)

Query: 7   LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLN 66
           L  F+TGT+T IGKT +S A+L  F + G+    +KP+A+GAY   ++ +W NED + L+
Sbjct: 5   LSLFVTGTDTEIGKTFVSAAMLHGFARHGLRAAALKPVAAGAY--QRDGVWRNEDADQLD 62

Query: 67  KYSNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIG 126
             +N +    +L  P+L K P +P+  +  E   ++   I+ C+       DV+++EG+G
Sbjct: 63  AAANVVLP-PELRTPFLLKAPAAPHIVAAQEGVTLDLDTIVACHREALTRADVVVVEGVG 121

Query: 127 GFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ 186
           GF VP +D +++ADLA  LGLP++LV+ +++GCI++ALL+ +AI  RGL L GWVANH  
Sbjct: 122 GFRVPLNDTQDTADLAVALGLPVVLVVGIRLGCISHALLTADAIRQRGLALAGWVANHVD 181

Query: 187 IVDTLFANENYIELTKYL---NVTPL-GRIPYLYNLNINLISHYLDFSSL 232
              + FA+EN   +  +L   +  PL GRI ++        +  LD ++L
Sbjct: 182 PAMS-FADENVATIRDWLAREHRAPLVGRIAHMTPAAPESAAAMLDIAAL 230

Catalyzes a mechanistically unusual reaction, the ATP-dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring.

Burkholderia cepacia (strain J2315 / LMG 16656) (taxid: 216591)

EC: 6

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 3

>sp|Q39CE5|BIOD_BURS3 ATP-dependent dethiobiotin synthetase BioD OS=Burkholderia sp. (strain 383) GN=bioD PE=3 SV=1

 Score =  161 bits (407), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 89/230 (38%), Positives = 140/230 (60%), Gaps = 8/230 (3%)

Query: 7   LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLN 66
           L  F+TGT+T IGKT +S ALL  F + G+    +KP+A+GAY   ++ +W NED + L+
Sbjct: 5   LSLFVTGTDTEIGKTFVSAALLHGFARHGLRAAALKPVAAGAY--ERDGVWRNEDADQLD 62

Query: 67  KYSNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIG 126
             +N +    +L  P+L K P +P+  +  E   ++   I+ C+       DV+++EG G
Sbjct: 63  AAANVVLP-PELRTPFLLKAPAAPHIVAAQEGVTLDIDTIVACHREALTRADVVVVEGAG 121

Query: 127 GFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ 186
           GF VP +D ++ ADLA  LG+P++LV+ +++GCIN+ALL+ +AI +RGLKL GWVANH  
Sbjct: 122 GFRVPMNDTQDLADLAVALGVPVVLVVGVRLGCINHALLTADAIAARGLKLAGWVANHVD 181

Query: 187 IVDTLFANENYIELTKYL---NVTP-LGRIPYLYNLNINLISHYLDFSSL 232
              + F +EN   +  +L   +  P LGRIP++        +  LD ++L
Sbjct: 182 PAMS-FPDENIATMRDWLAREHGAPLLGRIPHMSPAAPESAAAMLDIAAL 230

Catalyzes a mechanistically unusual reaction, the ATP-dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring.

Burkholderia sp. (strain 383) (taxid: 269483)

EC: 6

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 3

>sp|B2UBJ4|BIOD_RALPJ ATP-dependent dethiobiotin synthetase BioD OS=Ralstonia pickettii (strain 12J) GN=bioD PE=3 SV=1

 Score =  158 bits (399), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 133/226 (58%), Gaps = 8/226 (3%)

Query: 10  FITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYS 69
           F+TGT+T IGKT++S  LL+     G    G+KPIA+G       +   NEDV  L   +
Sbjct: 8   FVTGTDTEIGKTLVSAVLLTRLADAGYRAAGLKPIAAGTLAGAPTRT--NEDVEQLRAAA 65

Query: 70  NSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFS 129
           +    F   + P+L   P+SP+ ++  E   I    I++ + +  +L D +++EG+GGF 
Sbjct: 66  SVNLPF-DTVCPWLLDAPMSPHLAAAREGVTITLPPILDAFAHARSLADAVVVEGVGGFR 124

Query: 130 VPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVD 189
           VP  D+ ++A++A  LGLP++LV+ L++GC+N+A L+ EAI +RGL L GWV N   +VD
Sbjct: 125 VPLSDDFDTAEMAVALGLPVVLVVGLRLGCLNHAALTAEAIAARGLHLAGWVGN---VVD 181

Query: 190 TLFA--NENYIELTKYLNVTPLGRIPYLYNLNINLISHYLDFSSLF 233
              A  ++N   L +++N   LG IP L + +  L + ++D + L 
Sbjct: 182 PSMAGLDDNVATLRRWINAPHLGTIPRLPHADARLAAAHVDIAPLL 227

Catalyzes a mechanistically unusual reaction, the ATP-dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring.

Ralstonia pickettii (strain 12J) (taxid: 402626)

EC: 6

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 3

>sp|Q2Y9Y5|BIOD_NITMU ATP-dependent dethiobiotin synthetase BioD OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=bioD PE=3 SV=1

 Score =  157 bits (398), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 84/224 (37%), Positives = 131/224 (58%), Gaps = 8/224 (3%)

Query: 9   YFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKY 68
           YF+TGT+T +GKT ++CALL  F   G + +GMKP+A+G     +N +W   DV LL   
Sbjct: 7   YFVTGTDTGVGKTRVTCALLHAFAATGKTVVGMKPVAAGC----ENGMW--PDVELLAAA 60

Query: 69  SNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGF 128
           SN   +  + INPY    PI+P+ +++     I+   I   +  L    D++I+EG GGF
Sbjct: 61  SNISVQ-REHINPYALVPPIAPHIAADRAGIEIDLEVIRQAHLELKKKADIVIVEGAGGF 119

Query: 129 SVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIV 188
            VP +D+E+S  L + LGL ++LV+ +++GCIN+ALL+  A+ +  + L GWVAN     
Sbjct: 120 LVPLNDHEDSVALVQALGLAVLLVVGMRLGCINHALLTAHAVRAAQIPLAGWVANRIDPE 179

Query: 189 DTLFANENYIELTKYLNVTPLGRIPYLYNLNINLISHYLDFSSL 232
             +F  EN + L + L+   LG +PY  N +   +S  LD + +
Sbjct: 180 MAVF-KENVLALEQRLDCPLLGILPYDQNHDARDLSSLLDIARI 222

Catalyzes a mechanistically unusual reaction, the ATP-dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring.

Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) (taxid: 323848)

EC: 6

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 3

>sp|A4JIB6|BIOD_BURVG ATP-dependent dethiobiotin synthetase BioD OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=bioD PE=3 SV=1

 Score =  156 bits (395), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 85/230 (36%), Positives = 138/230 (60%), Gaps = 8/230 (3%)

Query: 7   LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLN 66
           L  F+TGT+T IGKT +S A+L  F + G+    +KP+A+GAY   ++ IW NED + L+
Sbjct: 5   LSVFVTGTDTEIGKTFVSAAMLHGFARHGLRAAALKPVAAGAY--ERDGIWRNEDADQLD 62

Query: 67  KYSNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIG 126
             +N      +L  P+L K P +P+  +  E   ++   I+  +       +V+++EG+G
Sbjct: 63  AAANVALP-PELRTPFLLKAPAAPHIVAAHEGVTLDIDTIVASHREALTRANVVVVEGVG 121

Query: 127 GFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ 186
           GF VP +D +++ADLA  LGLP++LV+ +++GCI++ALL+ +AI  RGL L GWVANH  
Sbjct: 122 GFRVPLNDTQDTADLAVALGLPVVLVVGIRLGCISHALLTADAIRQRGLTLAGWVANHVD 181

Query: 187 IVDTLFANENYIELTKYL---NVTP-LGRIPYLYNLNINLISHYLDFSSL 232
              + +A+EN   +  +L   +  P LGR+ +L        +  LD ++L
Sbjct: 182 PAMS-YADENVATIRDWLAREHRAPLLGRVAHLRPAAPESAAAMLDIAAL 230

Catalyzes a mechanistically unusual reaction, the ATP-dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring.

Burkholderia vietnamiensis (strain G4 / LMG 22486) (taxid: 269482)

EC: 6

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 3

>sp|A3N521|BIOD_BURP6 ATP-dependent dethiobiotin synthetase BioD OS=Burkholderia pseudomallei (strain 668) GN=bioD PE=3 SV=1

 Score =  150 bits (379), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 87/226 (38%), Positives = 134/226 (59%), Gaps = 8/226 (3%)

Query: 7   LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLN 66
           L  F+TGT+T IGKT +S ALL  F + G+    MKP+A+GAY   ++  W NED + L+
Sbjct: 5   LSLFVTGTDTEIGKTFVSAALLHGFARAGLRAAAMKPVAAGAY--ERDGAWRNEDADQLD 62

Query: 67  KYSNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIG 126
             +N       +  P+L K P +P+  +  E   ++   I++ +     + DVI++EG+G
Sbjct: 63  AAANVAL-PAAIRTPFLLKAPAAPHIVAAREGVALDIGTIVDAHRRACEMADVIVVEGVG 121

Query: 127 GFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ 186
           GF VP  D  ++ADLA  LGLP++LV+ +++GCI++ALL+ EAI +RGL L GWVAN   
Sbjct: 122 GFRVPLADTRDTADLAVALGLPVVLVVGVRLGCISHALLTAEAIAARGLPLAGWVANRID 181

Query: 187 IVDTLFANENYIELTKYL---NVTP-LGRIPYLYNLNINLISHYLD 228
                FA++N   L  +L   +  P LG + ++   + +  SH LD
Sbjct: 182 PA-MPFADDNVDTLRAWLEREHRAPLLGALAHMSPPSPDAASHALD 226

Catalyzes a mechanistically unusual reaction, the ATP-dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring.

Burkholderia pseudomallei (strain 668) (taxid: 320373)

EC: 6

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 3

>sp|Q3JWR7|BIOD_BURP1 ATP-dependent dethiobiotin synthetase BioD OS=Burkholderia pseudomallei (strain 1710b) GN=bioD PE=3 SV=1

 Score =  150 bits (379), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 87/226 (38%), Positives = 134/226 (59%), Gaps = 8/226 (3%)

Query: 7   LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLN 66
           L  F+TGT+T IGKT +S ALL  F + G+    MKP+A+GAY   ++  W NED + L+
Sbjct: 5   LSLFVTGTDTEIGKTFVSAALLHGFARAGLRAAAMKPVAAGAY--ERDGAWRNEDADQLD 62

Query: 67  KYSNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIG 126
             +N       +  P+L K P +P+  +  E   ++   I++ +     + DVI++EG+G
Sbjct: 63  AAANVAL-PAAIRTPFLLKAPAAPHIVAAREGVALDIGTIVDAHRRACEMADVIVVEGVG 121

Query: 127 GFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ 186
           GF VP  D  ++ADLA  LGLP++LV+ +++GCI++ALL+ EAI +RGL L GWVAN   
Sbjct: 122 GFRVPLADTRDTADLAVALGLPVVLVVGVRLGCISHALLTAEAIAARGLPLAGWVANRID 181

Query: 187 IVDTLFANENYIELTKYL---NVTP-LGRIPYLYNLNINLISHYLD 228
                FA++N   L  +L   +  P LG + ++   + +  SH LD
Sbjct: 182 PA-MPFADDNVDTLRAWLEREHRAPLLGALAHMSPPSPDAASHALD 226

Catalyzes a mechanistically unusual reaction, the ATP-dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring.

Burkholderia pseudomallei (strain 1710b) (taxid: 320372)

EC: 6

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
237746986	228	dithiobiotin synthetase [Oxalobacter for	0.952	0.973	0.473	7e-51
237749139	228	dithiobiotin synthetase [Oxalobacter for	0.879	0.899	0.473	2e-49
445493866	260	dethiobiotin synthase BioD [Janthinobact	0.939	0.842	0.412	4e-49
340789432	248	dethiobiotin synthetase [Collimonas fung	0.969	0.911	0.397	3e-48
161523552	239	dithiobiotin synthetase [Burkholderia mu	0.952	0.928	0.378	9e-45
421476633	239	dethiobiotin synthase [Burkholderia mult	0.952	0.928	0.378	1e-44
427400061	282	dethiobiotin synthase [Massilia timonae	0.939	0.776	0.390	2e-44
385207186	245	dethiobiotin synthase [Burkholderia sp.	0.974	0.926	0.382	2e-44
91781581	245	dithiobiotin synthetase [Burkholderia xe	0.974	0.926	0.382	4e-44
358637404	226	dethiobiotin synthase [Azoarcus sp. KH32	0.948	0.977	0.4	6e-44

>gi|237746986|ref|ZP_04577466.1| dithiobiotin synthetase [Oxalobacter formigenes HOxBLS] gi|229378337|gb|EEO28428.1| dithiobiotin synthetase [Oxalobacter formigenes HOxBLS]

 Score =  206 bits (523), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 108/228 (47%), Positives = 147/228 (64%), Gaps = 6/228 (2%)

Query: 5   NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNL 64
           N L YFITGT+T IGKT +SCAL+    K+G+    MKP+A+GA  +     W NEDV+ 
Sbjct: 2   NPLSYFITGTDTEIGKTTVSCALIRALAKKGLHVAPMKPVAAGA--SEIGGQWHNEDVDA 59

Query: 65  LNKYSNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEG 124
           L   SN+    + LI PYL K PI+P+ ++ L+ R I   HI++CYN +    D +I+EG
Sbjct: 60  LIAASNTELPLS-LIAPYLLKTPIAPHLAALLDQRPIELLHILSCYNEIRRQADAVIVEG 118

Query: 125 IGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANH 184
           +GGF VPF D+ +SADLA +L LP+ILV+ LK+GCIN+ALL+ EAI +RGL L GW+AN 
Sbjct: 119 VGGFCVPFTDSTSSADLAVQLNLPVILVVGLKLGCINHALLTAEAIRARGLNLAGWIANR 178

Query: 185 TQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNINLISHYLDFSSL 232
            +     FA++N   L  +LN   LG +PYL +   +    YLD S L
Sbjct: 179 IE-PHMPFADDNIRTLETWLNTPLLGTMPYLESF--SEADAYLDLSKL 223

Source: Oxalobacter formigenes HOxBLS

Species: Oxalobacter formigenes

Genus: Oxalobacter

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|237749139|ref|ZP_04579619.1| dithiobiotin synthetase [Oxalobacter formigenes OXCC13] gi|229380501|gb|EEO30592.1| dithiobiotin synthetase [Oxalobacter formigenes OXCC13]

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 99/209 (47%), Positives = 136/209 (65%), Gaps = 4/209 (1%)

Query: 7   LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLN 66
           L  FITGT+T IGKT +SCA++    K+G+    MKP+A+GA+    +    NEDV+ L 
Sbjct: 4   LSCFITGTDTEIGKTTVSCAIIRALVKKGLQVAAMKPVAAGAF--ESDGALHNEDVDALT 61

Query: 67  KYSNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIG 126
           K SN     + L  PYL K PI+P+ S+ L+  +I+  HI++CY  + +  D +I+EG+G
Sbjct: 62  KASNMSLPLS-LTTPYLLKTPIAPHLSAELDQVVIDNHHIVSCYRAIRDQADAVIVEGVG 120

Query: 127 GFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ 186
           GF VPF D  +SA+LA +L LP+ILV+ +K+GCIN+ALL+ EA+ SRGLKL GWVAN T 
Sbjct: 121 GFCVPFTDCTDSAELAVQLALPVILVVGMKLGCINHALLTAEAVRSRGLKLAGWVAN-TI 179

Query: 187 IVDTLFANENYIELTKYLNVTPLGRIPYL 215
                F +EN   L   LN   LG +PYL
Sbjct: 180 DPRMPFCDENIHTLEARLNAPKLGTLPYL 208

Source: Oxalobacter formigenes OXCC13

Species: Oxalobacter formigenes

Genus: Oxalobacter

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|445493866|ref|ZP_21460910.1| dethiobiotin synthase BioD [Janthinobacterium sp. HH01] gi|444790027|gb|ELX11574.1| dethiobiotin synthase BioD [Janthinobacterium sp. HH01]

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 92/223 (41%), Positives = 144/223 (64%), Gaps = 4/223 (1%)

Query: 10  FITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYS 69
           F+TGT+T IGKT+IS A+L    + G+   GMKP+A+GA L  ++  W N+D + L    
Sbjct: 33  FVTGTDTEIGKTLISSAMLYALVQAGVRACGMKPVAAGAEL--RDGTWHNDDCDQLAAAG 90

Query: 70  NSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFS 129
           N ++    +  P+L K P +P+ ++ LE   I+   I+  Y  ++  +D  ++EG+GGF 
Sbjct: 91  N-VHLLQSITTPFLLKEPAAPHIAAALEGITISPVPILAAYVEINAASDATVVEGVGGFR 149

Query: 130 VPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVD 189
           VP +D+ ++ADLAE+L LP++LV+ L++GCI++ALL++EAI +RGL+L GWVAN TQ  D
Sbjct: 150 VPLNDDFDTADLAEQLDLPVVLVVGLRLGCISHALLTVEAIEARGLRLAGWVANETQ-AD 208

Query: 190 TLFANENYIELTKYLNVTPLGRIPYLYNLNINLISHYLDFSSL 232
             FA+EN   L + ++   LGR+P L        + Y+DF+ L
Sbjct: 209 MAFADENVAALEQRISAPLLGRVPRLAEPGARAAAEYIDFTQL 251

Source: Janthinobacterium sp. HH01

Species: Janthinobacterium sp. HH01

Genus: Janthinobacterium

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|340789432|ref|YP_004754897.1| dethiobiotin synthetase [Collimonas fungivorans Ter331] gi|340554699|gb|AEK64074.1| Dethiobiotin synthetase [Collimonas fungivorans Ter331]

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 93/234 (39%), Positives = 146/234 (62%), Gaps = 8/234 (3%)

Query: 3   NKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDV 62
           N     +FI GT+T IGKT+I+ ALL    K G+   GMKP+A+GA L  +N  W N+D 
Sbjct: 7   NTQKAAWFIAGTDTEIGKTLIAGALLHGLTKTGVRSAGMKPVAAGAEL--RNGAWHNDDA 64

Query: 63  NLLNKYSNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIIL 122
           ++L   + S+    ++  P+L +   +P+ ++  E R I  +HI++CY  ++ L D +++
Sbjct: 65  DVLAAEA-SVTLPQEMTTPFLLRQATAPHIAAEQEQRSIELAHILSCYQQIAALADAVVV 123

Query: 123 EGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVA 182
           EG+GGF VP +D  ++ADLA++LGLP++LV+ L++GCI++ALL+ EAI +RGL+L GWVA
Sbjct: 124 EGVGGFRVPLNDTHDTADLAQQLGLPVVLVVGLRLGCISHALLTAEAIAARGLRLAGWVA 183

Query: 183 NHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLN----INLISHYLDFSSL 232
           N T     L A+ N   L   ++   LG +P +  L     +   + +LDFS L
Sbjct: 184 N-TVDAAMLNADANIAALKSRIDAPFLGHVPRMDELPARALVEAAASHLDFSRL 236

Source: Collimonas fungivorans Ter331

Species: Collimonas fungivorans

Genus: Collimonas

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|161523552|ref|YP_001578564.1| dithiobiotin synthetase [Burkholderia multivorans ATCC 17616] gi|189351678|ref|YP_001947306.1| dithiobiotin synthetase [Burkholderia multivorans ATCC 17616] gi|221199843|ref|ZP_03572886.1| dethiobiotin synthase [Burkholderia multivorans CGD2M] gi|221207488|ref|ZP_03580497.1| dethiobiotin synthase [Burkholderia multivorans CGD2] gi|221211049|ref|ZP_03584028.1| dethiobiotin synthase [Burkholderia multivorans CGD1] gi|421471748|ref|ZP_15920008.1| dethiobiotin synthase [Burkholderia multivorans ATCC BAA-247] gi|226698961|sp|A9AE45.1|BIOD_BURM1 RecName: Full=ATP-dependent dethiobiotin synthetase BioD; AltName: Full=DTB synthetase; Short=DTBS; AltName: Full=Dethiobiotin synthase gi|160340981|gb|ABX14067.1| dethiobiotin synthase [Burkholderia multivorans ATCC 17616] gi|189335700|dbj|BAG44770.1| dethiobiotin synthetase [Burkholderia multivorans ATCC 17616] gi|221168410|gb|EEE00878.1| dethiobiotin synthase [Burkholderia multivorans CGD1] gi|221172691|gb|EEE05129.1| dethiobiotin synthase [Burkholderia multivorans CGD2] gi|221180082|gb|EEE12486.1| dethiobiotin synthase [Burkholderia multivorans CGD2M] gi|400224738|gb|EJO54948.1| dethiobiotin synthase [Burkholderia multivorans ATCC BAA-247]

 Score =  186 bits (471), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 87/230 (37%), Positives = 143/230 (62%), Gaps = 8/230 (3%)

Query: 7   LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLN 66
           L  F+TGT+T IGKT +S ALL  F + G+    MKP+A+GAY   ++ +W NED + L+
Sbjct: 5   LSLFVTGTDTEIGKTFVSAALLHGFARHGLRAAAMKPVAAGAY--ERDGVWRNEDADQLD 62

Query: 67  KYSNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIG 126
             ++ +    +L  P+L K P +P+  +  E+  ++   I+ C+       D++++EG+G
Sbjct: 63  AAASVVLP-PELRTPFLLKAPAAPHIVAAHEHVTLDIDTIVACHRDALTRADIVVVEGVG 121

Query: 127 GFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ 186
           GF VP +D +++ADLA  LGLP++LV+ +++GCI++ALL+ +AI +RGL L GWVANH  
Sbjct: 122 GFRVPLNDTQDTADLAVALGLPVVLVVGMRLGCISHALLTADAIAARGLTLAGWVANHVD 181

Query: 187 IVDTLFANENYIELTKYL---NVTP-LGRIPYLYNLNINLISHYLDFSSL 232
              T +A+EN   +  +L   +  P LGRI ++   +    +  LD ++L
Sbjct: 182 PAMT-YADENVATIRDWLAREHRAPLLGRIAHMAPADPESAAATLDIAAL 230

Source: Burkholderia multivorans ATCC 17616

Species: Burkholderia multivorans

Genus: Burkholderia

Family: Burkholderiaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|421476633|ref|ZP_15924508.1| dethiobiotin synthase [Burkholderia multivorans CF2] gi|400227997|gb|EJO57959.1| dethiobiotin synthase [Burkholderia multivorans CF2]

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 87/230 (37%), Positives = 143/230 (62%), Gaps = 8/230 (3%)

Query: 7   LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLN 66
           L  F+TGT+T IGKT +S ALL  F + G+    MKP+A+GAY   ++ +W NED + L+
Sbjct: 5   LSLFVTGTDTEIGKTFVSAALLHGFTRHGLRAAAMKPVAAGAY--ERDGVWRNEDADQLD 62

Query: 67  KYSNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIG 126
             ++ +    +L  P+L K P +P+  +  E+  ++   I+ C+       D++++EG+G
Sbjct: 63  AAASVVLP-PELRTPFLLKAPAAPHIVAAHEHVTLDIDTIVACHRDALTRADIVVVEGVG 121

Query: 127 GFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ 186
           GF VP +D +++ADLA  LGLP++LV+ +++GCI++ALL+ +AI +RGL L GWVANH  
Sbjct: 122 GFRVPLNDTQDTADLAVALGLPVVLVVGMRLGCISHALLTADAIAARGLTLAGWVANHVD 181

Query: 187 IVDTLFANENYIELTKYL---NVTP-LGRIPYLYNLNINLISHYLDFSSL 232
              T +A+EN   +  +L   +  P LGRI ++   +    +  LD ++L
Sbjct: 182 PAMT-YADENVATIRDWLAREHRAPLLGRIAHMAPADPESAAATLDIAAL 230

Source: Burkholderia multivorans CF2

Species: Burkholderia multivorans

Genus: Burkholderia

Family: Burkholderiaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|427400061|ref|ZP_18891299.1| dethiobiotin synthase [Massilia timonae CCUG 45783] gi|425720801|gb|EKU83716.1| dethiobiotin synthase [Massilia timonae CCUG 45783]

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 87/223 (39%), Positives = 140/223 (62%), Gaps = 4/223 (1%)

Query: 10  FITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYS 69
           F+TGT+T IGKT++S A+L +    G+   GMKP+A+GA L +      N+D ++L    
Sbjct: 54  FVTGTDTEIGKTLVSSAILHKLAASGVRACGMKPVAAGAELRDGE--LHNDDADMLVAAG 111

Query: 70  NSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFS 129
           N ++  + +  PY+ + P +P+ ++ LEN  I ++ II  +  +   +D +++EG+GGF 
Sbjct: 112 N-VHLPSSITTPYMLREPAAPHIAAALENVTIESAPIIAAFAEIQAASDAVVVEGVGGFR 170

Query: 130 VPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVD 189
           VPF+DN +SADLA +L LP+ILV+ +++GCI++ALL++EAI +RGL L GWVAN T   +
Sbjct: 171 VPFNDNFDSADLAAQLNLPVILVVGMRLGCISHALLTVEAIVARGLVLAGWVAN-TADPN 229

Query: 190 TLFANENYIELTKYLNVTPLGRIPYLYNLNINLISHYLDFSSL 232
             F  EN   L + +    LGR+P L        + ++D + L
Sbjct: 230 MRFEQENIEALAQRIPAPLLGRVPRLQTPTAAAAAEFIDLAGL 272

Source: Massilia timonae CCUG 45783

Species: Massilia timonae

Genus: Massilia

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|385207186|ref|ZP_10034054.1| dethiobiotin synthase [Burkholderia sp. Ch1-1] gi|385179524|gb|EIF28800.1| dethiobiotin synthase [Burkholderia sp. Ch1-1]

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 90/235 (38%), Positives = 142/235 (60%), Gaps = 8/235 (3%)

Query: 3   NKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDV 62
           ++N L  F+TGT+T IGKT +S ALL  F + G+    MKPIA+GA+    N +  NED 
Sbjct: 5   SQNALSLFVTGTDTEIGKTFVSAALLRGFVREGLQAAAMKPIAAGAF--ELNGVPHNEDA 62

Query: 63  NLLNKYSNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIIL 122
           + L+  SN L    ++  PYL K P +P+ ++ LEN  ++   I++C+       +++++
Sbjct: 63  DQLDAASNVLLP-PEMRTPYLLKEPAAPHIAAALENVTLDLDRIVDCHAQALKRAEIVVV 121

Query: 123 EGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVA 182
           EG+GGF VP    +++ADLA  L LP++LV+ +++GCI++ALL+ EAI +RGL L GWVA
Sbjct: 122 EGVGGFRVPLTATQDTADLAVALKLPVVLVVGMRLGCISHALLTAEAIAARGLTLAGWVA 181

Query: 183 NHTQIVDTLFANENYIELTKYL----NVTPLGRIPYLYNLNINLISHYLDFSSLF 233
           N     D  F +EN   + ++L    +   LG +P+L   +  L +  LD + L 
Sbjct: 182 NRID-PDMTFPDENIASIREHLAREYDAPLLGIVPHLSPASPELAAEQLDINRLL 235

Source: Burkholderia sp. Ch1-1

Species: Burkholderia sp. Ch1-1

Genus: Burkholderia

Family: Burkholderiaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|91781581|ref|YP_556787.1| dithiobiotin synthetase [Burkholderia xenovorans LB400] gi|91685535|gb|ABE28735.1| Dethiobiotin synthase [Burkholderia xenovorans LB400]

 Score =  183 bits (465), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 90/235 (38%), Positives = 142/235 (60%), Gaps = 8/235 (3%)

Query: 3   NKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDV 62
           ++N L  FITGT+T IGKT +S ALL  F + G+    MKP+A+GA+    +    NED 
Sbjct: 5   SQNALSLFITGTDTEIGKTFVSAALLRGFVREGLQAAAMKPVAAGAF--ELDGALHNEDA 62

Query: 63  NLLNKYSNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIIL 122
           + L+  SN L    ++  PYL K P +P+ ++ LEN  ++  HI++C+       +++++
Sbjct: 63  DQLDAASNVLLP-PEIRTPYLLKEPAAPHIAAALENVTLDLGHIVDCHAQALKRAEIVVV 121

Query: 123 EGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVA 182
           EG+GGF VP    +++ADLA  L LP++LV+ +++GCI++ALL+ EAI +RGL L GWVA
Sbjct: 122 EGVGGFRVPLTAAQDTADLAVALELPVVLVVGMRLGCISHALLTAEAIAARGLTLAGWVA 181

Query: 183 NHTQIVDTLFANENYIELTKYL----NVTPLGRIPYLYNLNINLISHYLDFSSLF 233
           N     D  F +EN   + ++L    +   LG +P+L   +  L +  LD + L 
Sbjct: 182 NRID-PDMTFPDENIASIREHLARAYDAPLLGIVPHLNPASPELAAEQLDINRLL 235

Source: Burkholderia xenovorans LB400

Species: Burkholderia xenovorans

Genus: Burkholderia

Family: Burkholderiaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|358637404|dbj|BAL24701.1| dethiobiotin synthase [Azoarcus sp. KH32C]

 Score =  183 bits (464), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 90/225 (40%), Positives = 138/225 (61%), Gaps = 4/225 (1%)

Query: 5   NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNL 64
           N   +F+TGT+T IGKT I+CALL   +  G S +GMKP+A+GA   + + +  NED   
Sbjct: 3   NRQAWFLTGTDTEIGKTFITCALLHAARAAGRSALGMKPVAAGA--EDVDGVLINEDAAR 60

Query: 65  LNKYSNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEG 124
           L   + S     + +NPY    P++P+ ++  E   I+ SHI+  +  L    DV+I+EG
Sbjct: 61  L-LAAGSFDPGLQWLNPYCLTQPVAPHIAAAAEGVSIDPSHILKAFRLLQTQADVVIVEG 119

Query: 125 IGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANH 184
           +GGF VP  D+ ++ADLA  LGLP+ILV+ +++GCIN+ALL++EAI +RGL+L GW+AN 
Sbjct: 120 VGGFRVPLDDDYDTADLAVDLGLPVILVVGMRLGCINHALLTVEAIKARGLRLAGWIANC 179

Query: 185 TQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNINLISHYLDF 229
               D    +EN   L + ++   LG +PY+   + +L +  L  
Sbjct: 180 I-TPDMPRLDENIAALQQRISAPLLGVVPYVPGNDPSLAAQRLQL 223

Source: Azoarcus sp. KH32C

Species: Azoarcus sp. KH32C

Genus: Azoarcus

Family: Rhodocyclaceae

Order: Rhodocyclales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
TIGR_CMR|CBU_1003	242	CBU_1003 "dethiobiotin synthet	0.918	0.884	0.343	1.2e-28
UNIPROTKB|P13000	225	bioD "dethiobiotin synthetase	0.871	0.902	0.338	2.3e-23
UNIPROTKB|Q9KSZ1	231	bioD "ATP-dependent dethiobiot	0.785	0.792	0.319	7e-22
TIGR_CMR|VC_1115	231	VC_1115 "dethiobiotin syntheta	0.785	0.792	0.319	7e-22
TIGR_CMR|CPS_2597	263	CPS_2597 "dethiobiotin synthas	0.570	0.505	0.310	3.4e-20
UNIPROTKB|P69954	222	bioD "ATP-dependent dethiobiot	0.862	0.905	0.311	4.4e-20
TIGR_CMR|SO_2737	231	SO_2737 "dethiobiotin synthase	0.935	0.943	0.296	4.4e-20
UNIPROTKB|Q5NGB5	225	bioD "ATP-dependent dethiobiot	0.815	0.844	0.297	6.7e-17
UNIPROTKB|P0A6E9	231	ynfK [Escherichia coli K-12 (t	0.922	0.930	0.284	3.3e-15
TIGR_CMR|GSU_1583	240	GSU_1583 "dethiobiotin synthas	0.755	0.733	0.293	2.4e-12

TIGR_CMR|CBU_1003 CBU_1003 "dethiobiotin synthetase" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 78/227 (34%), Positives = 126/227 (55%)

Query:     7 LHYFXXXXXXXXXXXXXSCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLN 66
             + +F             S  LL +F  +G S  G+KPIASG    N NK+  N+D   L 
Sbjct:     1 MKFFITGTDTGVGKTYVSTLLLHQFNNKGFSTFGIKPIASGCRKIN-NKL-HNDDALALQ 58

Query:    67 KYSN--SLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNL-TDVIILE 123
             K ++  + YE    +NP   + PI+P+ ++ L N++++ + +    N + NL  DV I+E
Sbjct:    59 KVASIKTTYEH---VNPIALEPPIAPHIAAKLNNQVLSKNDLAKTINQIFNLPADVFIVE 115

Query:   124 GIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVAN 183
             G GG+ VP ++ E  +DL + L +P++LVI +K+GC+N+A L+ +A+    + L+GWVAN
Sbjct:   116 GAGGWFVPLNEKEFLSDLVKLLKIPVVLVIGIKLGCLNHAFLTAKAMLREKIPLVGWVAN 175

Query:   184 HTQIVDTLFANENYIELTKYLNVTPLGRIPY---LYNLNIN-LISHY 226
               +  D L   EN   L K +    LG IPY   + +L+I  L+ H+
Sbjct:   176 CIE-PDVLAMAENIQTLKKGIKAPCLGVIPYDGTVEDLSIQPLLDHF 221

GO:0004141 "dethiobiotin synthase activity" evidence=ISS

GO:0009102 "biotin biosynthetic process" evidence=ISS

UNIPROTKB|P13000 bioD "dethiobiotin synthetase monomer" [Escherichia coli K-12 (taxid:83333)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 70/207 (33%), Positives = 97/207 (46%)

Query:     9 YFXXXXXXXXXXXXXSCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKY 68
             YF             SCALL   K  G    G KP+ASG+    +     N D   L + 
Sbjct:     5 YFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLR--NSDALALQRN 62

Query:    69 SNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGF 128
             S+   ++   +NPY F  P SP+  S  E R I +  +      L    D +++EG GG+
Sbjct:    63 SSLQLDYAT-VNPYTFAEPTSPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGGW 121

Query:   129 SVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIV 188
               P  D    AD   +  LP+ILV+ +K+GCIN+A+L+ + I   GL L GWVAN     
Sbjct:   122 FTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPP 181

Query:   189 DTLFANENYIELTKYLNVTPLGRIPYL 215
                 A E    LT+ +    LG IP+L
Sbjct:   182 GKRHA-EYMTTLTRMIPAPLLGEIPWL 207

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004141 "dethiobiotin synthase activity" evidence=IEA;IDA

GO:0009102 "biotin biosynthetic process" evidence=IEA;IMP

UNIPROTKB|Q9KSZ1 bioD "ATP-dependent dethiobiotin synthetase BioD" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 63/197 (31%), Positives = 110/197 (55%)

Query:    24 SCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWF-NEDVNLLNKYSNSLYEFTKLINPY 82
             S A+L       I+ IG KP+A+G+   +K +  + N D   L K +     +   +NPY
Sbjct:    20 SKAILQALATHNIATIGYKPVAAGS---DKTEFGYRNSDALHLMKAATVDMPYED-VNPY 75

Query:    83 LFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLA 142
                 P SP+ ++  EN  I+ + + N  +      +++++EG GG+ VP  D++  +   
Sbjct:    76 ALVLPTSPHIAAKHENVTIDYALLSNKLSKHKQNAELVVVEGAGGWRVPTSDSDCLSTWV 135

Query:   143 EKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTK 202
             ++  LP+ILV+ +K+GC+++A+L+ EAI + GL+L+GW+AN           E+Y E+ +
Sbjct:   136 KQERLPVILVVGIKLGCLSHAILTAEAIRADGLELVGWIANRINP-----GTEHYAEIIE 190

Query:   203 YLNV---TP-LGRIPYL 215
             +L     TP LG IPY+
Sbjct:   191 HLEGRLGTPKLGEIPYM 207

GO:0004141 "dethiobiotin synthase activity" evidence=ISS

GO:0009102 "biotin biosynthetic process" evidence=ISS

TIGR_CMR|VC_1115 VC_1115 "dethiobiotin synthetase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 63/197 (31%), Positives = 110/197 (55%)

Query:    24 SCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWF-NEDVNLLNKYSNSLYEFTKLINPY 82
             S A+L       I+ IG KP+A+G+   +K +  + N D   L K +     +   +NPY
Sbjct:    20 SKAILQALATHNIATIGYKPVAAGS---DKTEFGYRNSDALHLMKAATVDMPYED-VNPY 75

Query:    83 LFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLA 142
                 P SP+ ++  EN  I+ + + N  +      +++++EG GG+ VP  D++  +   
Sbjct:    76 ALVLPTSPHIAAKHENVTIDYALLSNKLSKHKQNAELVVVEGAGGWRVPTSDSDCLSTWV 135

Query:   143 EKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTK 202
             ++  LP+ILV+ +K+GC+++A+L+ EAI + GL+L+GW+AN           E+Y E+ +
Sbjct:   136 KQERLPVILVVGIKLGCLSHAILTAEAIRADGLELVGWIANRINP-----GTEHYAEIIE 190

Query:   203 YLNV---TP-LGRIPYL 215
             +L     TP LG IPY+
Sbjct:   191 HLEGRLGTPKLGEIPYM 207

GO:0004141 "dethiobiotin synthase activity" evidence=ISS

GO:0009102 "biotin biosynthetic process" evidence=ISS

TIGR_CMR|CPS_2597 CPS_2597 "dethiobiotin synthase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 146 (56.5 bits), Expect = 3.4e-20, Sum P(2) = 3.4e-20
 Identities = 45/145 (31%), Positives = 68/145 (46%)

Query:     9 YFXXXXXXXXXXXXXSCALLSEFKKRGISCIG-------MKPIASGAYLNNKNKIWFNED 61
             +F             SCAL+  F     S           KPI++G  L     I  NED
Sbjct:     4 FFVTATDTDAGKTFVSCALIHAFTHHNKSSTNELMKVAAFKPISAGCELVGGQLI--NED 61

Query:    62 VNLLNKYSNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLT-DVI 120
               LL++++NS       INP  F+ PI+P+ ++  EN+ I  + I + Y  + +L  DV 
Sbjct:    62 AKLLSEFANSGQSIAH-INPIAFEQPIAPHIAAKKENKQITIADINHHYQQVKSLNADVT 120

Query:   121 ILEGIGGFSVPFHD-NENSADLAEK 144
             ++EG GG+ +P  +    S D AEK
Sbjct:   121 LVEGAGGWRLPLGEMTVLSNDNAEK 145

GO:0004141 "dethiobiotin synthase activity" evidence=ISS

GO:0009102 "biotin biosynthetic process" evidence=ISS

UNIPROTKB|P69954 bioD "ATP-dependent dethiobiotin synthetase BioD" [Yersinia pseudotuberculosis IP 32953 (taxid:273123)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 65/209 (31%), Positives = 106/209 (50%)

Query:    24 SCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYL 83
             S ALL    + G + +G KP+A+ +   ++     N+D  +L   S+    + + +NPY 
Sbjct:    20 SRALLQALSQNGRTAVGYKPVATESKETSEGLR--NQDALILQASSSIELNYQE-VNPY- 75

Query:    84 FKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAE 143
                P+         + +IN   +      LS   D +I+EG GG+ V  +D    +D   
Sbjct:    76 ---PLQGDVIHACTDTLINYEKMTEGLQCLSAKADTVIVEGCGGWKVMMNDQRFYSDWVV 132

Query:   144 KLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKY 203
             +  LP+ILV+ +K+GCIN+ALL+ +AI + GL L+GWVAN        +A E    L   
Sbjct:   133 QEQLPVILVVGIKLGCINHALLTAQAIINDGLPLLGWVANRINPGLAHYA-ETIAMLRDR 191

Query:   204 LNVTPLGRIPYLYNLNINLISHYLDFSSL 232
             L    LG++PYL       ++ YLD +++
Sbjct:   192 LAAPQLGQLPYLPRPEEKPLAKYLDLTAI 220

GO:0004141 "dethiobiotin synthase activity" evidence=ISS

TIGR_CMR|SO_2737 SO_2737 "dethiobiotin synthase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 69/233 (29%), Positives = 124/233 (53%)

Query:     9 YFXXXXXXXXXXXXXSCALLSEFKK----RGIS--CIGMKPIASGAYLNNKNKIWFNEDV 62
             +F             S ALL+ F +     G S   +G+KP+ASG  +  K  +  ++ +
Sbjct:     2 FFVTGTDTDSGKTLVSTALLTAFNRDVLRAGSSRLSLGVKPVASGCEITEKG-LRNSDAL 60

Query:    63 NLLNKYSNSL-YEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLS-NLTDVI 120
              L++  S  L YE    +NP  F+  I+P+ ++  +   ++   I+   +  +    D  
Sbjct:    61 KLMSASSLKLSYE---QVNPISFEPAIAPHIAAKQQRVNLSPEAILAKLDRQAWAQADFC 117

Query:   121 ILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGW 180
             ++EG GG+ +P  +    ++L ++L LP+ILV+ +K+GC+N+ALL+ EAI + GL + GW
Sbjct:   118 LIEGAGGWRLPLGEGRYLSELVQQLNLPVILVVGMKLGCLNHALLTQEAILADGLTVAGW 177

Query:   181 VANHTQIVDTLFANENYIELTKYLNVTP-LGRIPYLYNLNINLISHYLDFSSL 232
             VAN      ++F +EN   L K + V+P LG IP+L   +    +++++   L
Sbjct:   178 VANCVDPNMSVF-DENLASL-KEMMVSPFLGCIPHLKQADAEHAANFMNIQPL 228

GO:0004141 "dethiobiotin synthase activity" evidence=ISS

GO:0009102 "biotin biosynthetic process" evidence=ISS

UNIPROTKB|Q5NGB5 bioD "ATP-dependent dethiobiotin synthetase BioD" [Francisella tularensis subsp. tularensis SCHU S4 (taxid:177416)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 64/215 (29%), Positives = 110/215 (51%)

Query:    24 SCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDV-NLLNKYSNSLYEFTKL-INP 81
             S  L+   + + I  + +KP+ASG   +  +++   EDV ++LN Y    ++FT   IN 
Sbjct:    19 STKLIEVCEHQNIKSLCLKPVASGQ--SQFSELC--EDVESILNAYK---HKFTAAEINL 71

Query:    82 YLFKYPISPY---TSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENS 138
               F   ++P+     + ++  I N    I    Y  +L D++ +EG GG   P+ D+   
Sbjct:    72 ISFNQAVAPHIIAAKTKVDISIENLKQFIED-KYNQDL-DILFIEGAGGLLTPYSDHTTQ 129

Query:   139 ADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYI 198
              DL + L +P++LV  +K+GCIN+ LL++  +N   +KL GW+AN         +N  YI
Sbjct:   130 LDLIKALQIPVLLVSAIKVGCINHTLLTINELNRHNIKLAGWIANCND------SNIKYI 183

Query:   199 ELTKYLN-VTPLGRIPYLYNLNINLISHYLDFSSL 232
             +  + +N +  L    Y  +  I+  + YLDF  L
Sbjct:   184 D--EQINTIEELSG--YKCSAKISRNADYLDFIDL 214

GO:0004141 "dethiobiotin synthase activity" evidence=ISS

UNIPROTKB|P0A6E9 ynfK [Escherichia coli K-12 (taxid:83333)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 64/225 (28%), Positives = 104/225 (46%)

Query:     9 YFXXXXXXXXXXXXXSCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKY 68
             +F             S ALL     +G +  G KP+A G+    +     N+D  +L   
Sbjct:     5 FFITGTDTSVGKTVVSRALLQALASQGKTVAGYKPVAKGSKETPEGLR--NKDALVLQSV 62

Query:    69 SNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGF 128
             S     + + +NP      +S   SS   +  IN + I N    L+   D +++EG GG+
Sbjct:    63 STIELPY-EAVNPIA----LSEEESSVAHSCPINYTLISNGLANLTEKVDHVVVEGTGGW 117

Query:   129 SVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIV 188
                 +D    ++   +  LP+++V+ ++ GCIN+ALL+ +AI + GL LIGWVAN  +I 
Sbjct:   118 RSLMNDLRPLSEWVVQEQLPVLMVVGIQEGCINHALLTAQAIANDGLPLIGWVAN--RIN 175

Query:   189 DTLFANENYIE-LTKYLNVTPLGRIPYLYNLNINLISHYLDFSSL 232
               L      I+ L K L    +G +PYL       +  Y+  + L
Sbjct:   176 PGLAHYAEIIDVLGKKLPAPLIGELPYLPRAEQRELGQYIRLAML 220

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004141 "dethiobiotin synthase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0009102 "biotin biosynthetic process" evidence=IEA

TIGR_CMR|GSU_1583 GSU_1583 "dethiobiotin synthase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 54/184 (29%), Positives = 85/184 (46%)

Query:    32 KKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKYPISPY 91
             + RG++   MKP+ SG    +   I  +ED  LL   +       +   PY  + PI+P 
Sbjct:    29 RDRGVNVGVMKPVTSGCIERDGTLI--SEDAELLTWAAG--VPLDEACAPYRLRTPIAPS 84

Query:    92 TSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIIL 151
              +++ E   I+ +H+ + Y  L    D +I+EG GG  VP       ADL   L L +++
Sbjct:    85 VAASREGVKIDFNHLKDAYETLRQRHDFVIVEGAGGLMVPLSGGMLVADLMSLLKLSLLV 144

Query:   152 VIDLKIGCINNALLSLEAINSRGLKLIGWVAN-HTQIVDTLFANENYIELTKYLNVTPL- 209
             V    +G IN+ +L+  A    GL + G + N + +  D   A E    L   L+  PL 
Sbjct:   145 VARPNLGTINHTVLTCYAARQLGLDVRGVIVNSYPESPD--MAEEYAPHLIDSLSGAPLL 202

Query:   210 GRIP 213
             G  P
Sbjct:   203 GVFP 206

GO:0004141 "dethiobiotin synthase activity" evidence=ISS

GO:0009102 "biotin biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B1YNS1	BIOD_BURA4	6, ., 3, ., 3, ., 3	0.3695	0.9527	0.9288	yes	N/A
Q1BT35	BIOD_BURCA	6, ., 3, ., 3, ., 3	0.3782	0.9527	0.9288	yes	N/A
A9R3D1	BIOD_YERPG	6, ., 3, ., 3, ., 3	0.3549	0.9484	0.9208	yes	N/A
Q8D298	BIOD_WIGBR	6, ., 3, ., 3, ., 3	0.4128	0.8969	0.9207	yes	N/A
B5EUP7	BIOD_VIBFM	6, ., 3, ., 3, ., 3	0.3201	0.9270	0.9557	yes	N/A
A3N521	BIOD_BURP6	6, ., 3, ., 3, ., 3	0.3849	0.9356	0.9083	yes	N/A
B0U3W7	BIOD_XYLFM	6, ., 3, ., 3, ., 3	0.3476	0.8583	0.8849	yes	N/A
Q1QYD9	BIOD_CHRSD	6, ., 3, ., 3, ., 3	0.3377	0.9184	0.9029	yes	N/A
Q87QN3	BIOD_VIBPA	6, ., 3, ., 3, ., 3	0.3141	0.9442	0.9649	yes	N/A
Q62MX0	BIOD_BURMA	6, ., 3, ., 3, ., 3	0.3805	0.9356	0.9083	yes	N/A
Q8D8N2	BIOD_VIBVU	6, ., 3, ., 3, ., 3	0.3187	0.9313	0.9559	yes	N/A
B4E9L5	BIOD_BURCJ	6, ., 3, ., 3, ., 3	0.3782	0.9527	0.9288	yes	N/A
Q8XZC2	BIOD_RALSO	6, ., 3, ., 3, ., 3	0.3451	0.9356	0.9519	yes	N/A
A6SU65	BIOD_JANMA	6, ., 3, ., 3, ., 3	0.4	0.9484	0.9364	yes	N/A
A1U4A9	BIOD_MARAV	6, ., 3, ., 3, ., 3	0.3448	0.9442	0.9401	yes	N/A
B5YHS9	BIOD_THEYD	6, ., 3, ., 3, ., 3	0.3288	0.9184	0.8916	yes	N/A
Q8ZGW9	BIOD1_YERPE	6, ., 3, ., 3, ., 3	0.3549	0.9484	0.9208	yes	N/A
A7MX33	BIOD_VIBHB	6, ., 3, ., 3, ., 3	0.3056	0.9313	0.9559	yes	N/A
B6ESC4	BIOD_ALISL	6, ., 3, ., 3, ., 3	0.3056	0.9313	0.9559	yes	N/A
Q63Y24	BIOD_BURPS	6, ., 3, ., 3, ., 3	0.3849	0.9356	0.9083	yes	N/A
B2UBJ4	BIOD_RALPJ	6, ., 3, ., 3, ., 3	0.3628	0.9356	0.9276	yes	N/A
Q0BBD5	BIOD_BURCM	6, ., 3, ., 3, ., 3	0.3782	0.9527	0.9288	yes	N/A
B1JZE0	BIOD_BURCC	6, ., 3, ., 3, ., 3	0.3826	0.9527	0.9288	yes	N/A
B4S0P6	BIOD_ALTMD	6, ., 3, ., 3, ., 3	0.3456	0.8755	0.8755	yes	N/A
Q5DZI1	BIOD_VIBF1	6, ., 3, ., 3, ., 3	0.3201	0.9270	0.9557	yes	N/A
Q5NZF8	BIOD_AROAE	6, ., 3, ., 3, ., 3	0.3863	0.9184	0.9511	yes	N/A
B2UNC5	BIOD_AKKM8	6, ., 3, ., 3, ., 3	0.3426	0.7167	0.7840	yes	N/A
Q39CE5	BIOD_BURS3	6, ., 3, ., 3, ., 3	0.3869	0.9527	0.9288	yes	N/A
Q1LTL5	BIOD_BAUCH	6, ., 3, ., 3, ., 3	0.3644	0.9484	0.9822	yes	N/A
Q2Y9Y5	BIOD_NITMU	6, ., 3, ., 3, ., 3	0.375	0.9270	0.9557	yes	N/A
B3PI90	BIOD_CELJU	6, ., 3, ., 3, ., 3	0.3451	0.9442	0.9649	yes	N/A
B2JKH5	BIOD_BURP8	6, ., 3, ., 3, ., 3	0.3679	0.9570	0.9330	yes	N/A
A2S7R2	BIOD_BURM9	6, ., 3, ., 3, ., 3	0.3805	0.9356	0.9083	yes	N/A
Q7MLU7	BIOD_VIBVY	6, ., 3, ., 3, ., 3	0.3187	0.9313	0.9559	yes	N/A
A4JIB6	BIOD_BURVG	6, ., 3, ., 3, ., 3	0.3695	0.9527	0.9288	yes	N/A
Q8ZQQ5	BIOD1_SALTY	6, ., 3, ., 3, ., 3	0.3584	0.9484	0.9692	yes	N/A
A3MNG2	BIOD_BURM7	6, ., 3, ., 3, ., 3	0.3805	0.9356	0.9083	yes	N/A
A3NQS2	BIOD_BURP0	6, ., 3, ., 3, ., 3	0.3849	0.9356	0.9083	yes	N/A
Q3JWR7	BIOD_BURP1	6, ., 3, ., 3, ., 3	0.3849	0.9356	0.9083	yes	N/A
P59564	BIOD_BUCBP	6, ., 3, ., 3, ., 3	0.3715	0.9055	0.9295	yes	N/A
Q9KSZ1	BIOD_VIBCH	6, ., 3, ., 3, ., 3	0.3144	0.9227	0.9307	yes	N/A
A1V818	BIOD_BURMS	6, ., 3, ., 3, ., 3	0.3805	0.9356	0.9083	yes	N/A
A0KB04	BIOD_BURCH	6, ., 3, ., 3, ., 3	0.3782	0.9527	0.9288	yes	N/A
A9AE45	BIOD_BURM1	6, ., 3, ., 3, ., 3	0.3782	0.9527	0.9288	yes	N/A
Q6LPR5	BIOD_PHOPR	6, ., 3, ., 3, ., 3	0.3116	0.8712	0.9227	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.3.3	0.824
3rd Layer	6.3.3	0.766

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	233
PRK00090	222	PRK00090, bioD, dithiobiotin synthetase; Reviewed	2e-71
COG0132	223	COG0132, BioD, Dethiobiotin synthetase [Coenzyme m	8e-62
TIGR00347	166	TIGR00347, bioD, dethiobiotin synthase	9e-43
PRK12374	231	PRK12374, PRK12374, putative dithiobiotin syntheta	2e-35
pfam13500	197	pfam13500, AAA_26, AAA domain	2e-32
cd03109	134	cd03109, DTBS, Dethiobiotin synthetase (DTBS) is t	3e-13
TIGR00379	449	TIGR00379, cobB, cobyrinic acid a,c-diamide syntha	1e-06
COG1797	451	COG1797, CobB, Cobyrinic acid a,c-diamide synthase	3e-06
PLN02974	817	PLN02974, PLN02974, adenosylmethionine-8-amino-7-o	9e-06
cd03109	134	cd03109, DTBS, Dethiobiotin synthetase (DTBS) is t	5e-05
pfam01656	217	pfam01656, CbiA, CobQ/CobB/MinD/ParA nucleotide bi	1e-04
PRK13896	433	PRK13896, PRK13896, cobyrinic acid a,c-diamide syn	0.001
PRK01077	451	PRK01077, PRK01077, cobyrinic acid a,c-diamide syn	0.002

>gnl|CDD|234625 PRK00090, bioD, dithiobiotin synthetase; Reviewed

 Score =  216 bits (554), Expect = 2e-71
 Identities = 86/226 (38%), Positives = 125/226 (55%), Gaps = 10/226 (4%)

Query: 9   YFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKY 68
            F+TGT+T++GKT+++ AL    ++ G S  G KP+ SG       +   N D   L + 
Sbjct: 2   LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYKPVQSGCE-----ETDRNGDALALQRL 56

Query: 69  SN--SLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIG 126
           S     YE    +NPY F+ P+SP+ ++ LE   I+   I      L+   D++++EG G
Sbjct: 57  SGLPLDYE---DVNPYRFEEPLSPHLAAALEGVAIDLEKISAALRRLAQQYDLVLVEGAG 113

Query: 127 GFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ 186
           G  VP  ++   ADLA++L LP+ILV+ +K+GCIN+ LL+LEAI +RGL L GWVAN   
Sbjct: 114 GLLVPLTEDLTLADLAKQLQLPVILVVGVKLGCINHTLLTLEAIRARGLPLAGWVANGIP 173

Query: 187 IVDTLFANENYIELTKYLNVTPLGRIPYLYNLNINLISHYLDFSSL 232
               L   EN   L + L    LG +PYL    +   + YLD   L
Sbjct: 174 PEPGLRHAENLATLERLLPAPLLGELPYLAEAELAAAAEYLDLDLL 219

Length = 222

>gnl|CDD|223210 COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism]

 Score =  192 bits (490), Expect = 8e-62
 Identities = 84/225 (37%), Positives = 126/225 (56%), Gaps = 7/225 (3%)

Query: 9   YFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKY 68
           +F+TGT+T +GKT++S AL    K++G S  G KP+ +G+      +   N D  +L + 
Sbjct: 5   FFVTGTDTGVGKTVVSAALAQALKQQGYSVAGYKPVQTGS-----EETAENSDALVLQRL 59

Query: 69  SNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGF 128
           S  L    +LINPY FK P+SP+ ++ LE R I+   +      L    D++++EG GG 
Sbjct: 60  S-GLDLSYELINPYRFKEPLSPHLAAELEGRTIDLEKLSQGLRQLLKKYDLVLVEGAGGL 118

Query: 129 SVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIV 188
            VP  +    ADLA +L LP+ILV+ +K+G IN+ LL++EA+ +RGL L GWVAN     
Sbjct: 119 LVPLTEEYTFADLAVQLQLPVILVVGIKLGTINHTLLTVEALRARGLPLAGWVANGINPE 178

Query: 189 DTLFANENYIELTKYLNVTPLGRIPYLYNLNINLISHYLDFSSLF 233
              +A  N   L K +    LG IPYL       +   +D ++L 
Sbjct: 179 LDHYAEINAT-LLKRIGAPLLGIIPYLPESEEEELGKLIDLAALL 222

Length = 223

>gnl|CDD|129447 TIGR00347, bioD, dethiobiotin synthase

 Score =  142 bits (359), Expect = 9e-43
 Identities = 62/174 (35%), Positives = 96/174 (55%), Gaps = 8/174 (4%)

Query: 10  FITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYS 69
           F+TGT+T +GKT+ S AL ++ KK G S    KP+ +G    N        D  LL   S
Sbjct: 1   FVTGTDTGVGKTVASSALAAKLKKAGYSVGYYKPVQTGIEKTN-------SDALLLQNIS 53

Query: 70  NSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFS 129
            +  ++ + +NPY F  P+SP+ +++ E R I+   +      L    D +++EG GG  
Sbjct: 54  GTALDWDE-VNPYAFALPLSPHIAADQEGRPIDLEELSKHLRTLEQKYDFVLVEGAGGLC 112

Query: 130 VPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVAN 183
           VP  +   +ADL + L LP+ILV+ +K+G IN+ LL++E     GL L G + N
Sbjct: 113 VPITEEYTTADLIKLLQLPVILVVRVKLGTINHTLLTVEHARQTGLTLAGVILN 166

Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 166

>gnl|CDD|237083 PRK12374, PRK12374, putative dithiobiotin synthetase; Provisional

 Score =  125 bits (315), Expect = 2e-35
 Identities = 76/233 (32%), Positives = 121/233 (51%), Gaps = 26/233 (11%)

Query: 9   YFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAY-----LNNKNKIWFNEDVN 63
           +FITGT+T++GKT++S ALL     +G +  G KP+A G+      L NK+         
Sbjct: 5   FFITGTDTSVGKTVVSRALLQALASQGKTVAGYKPVAKGSKETPEGLRNKDA-------- 56

Query: 64  LLNKYSNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILE 123
           L+ +  +S+    + +NP      +S   SS   +  IN + + N    LS   D +++E
Sbjct: 57  LVLQSVSSIELPYEAVNPI----ALSEEESSVAHSCPINYTLMSNGLANLSEKVDHVVVE 112

Query: 124 GIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVAN 183
           G GG+    +D    ++   +  LP+++V+ ++ GCIN+ALL+ +AI + GL LIGWVAN
Sbjct: 113 GTGGWRSLMNDLRPLSEWVVQEQLPVLMVVGIQEGCINHALLTAQAIANDGLPLIGWVAN 172

Query: 184 HTQIVDTLFANENYIE----LTKYLNVTPLGRIPYLYNLNINLISHYLDFSSL 232
             +I   L    +Y E    L K L    +G +PYL       +  Y+D S L
Sbjct: 173 --RINPGL---AHYAEIIDVLGKKLPAPLIGELPYLPRAEQRELGQYIDLSML 220

Length = 231

>gnl|CDD|222178 pfam13500, AAA_26, AAA domain

 Score =  116 bits (292), Expect = 2e-32
 Identities = 68/212 (32%), Positives = 105/212 (49%), Gaps = 19/212 (8%)

Query: 8   HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNK 67
             F+TGT+T +GKT++S  L+   K RG+     KPI SG           + D  L+ +
Sbjct: 2   TIFVTGTDTGVGKTVVSLGLVRALK-RGVKVGYWKPIQSGLV--------DDGDSELVKR 52

Query: 68  YSNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGG 127
                    +   PY    P+SP+ ++ LE   I+   I+     L    D +++EG GG
Sbjct: 53  LLGLDQTR-EHPEPYRLSAPLSPHLAARLEGVTIDLEKIVK---KLPKDADPLVVEGAGG 108

Query: 128 FSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQI 187
             VP ++N  + D+A  LGLP+ILV    +G IN+ LL++EA+ SRG+ ++G + N    
Sbjct: 109 LMVPLNENLLNIDIAANLGLPVILVARGGLGTINHTLLTIEALRSRGINILGVILNGVP- 167

Query: 188 VDTLFANENYIELTKYLNVTPLGRIPYLYNLN 219
                   N   +  +  V  LG IPYL +L 
Sbjct: 168 -----NPANVEAIEAFSGVPVLGVIPYLPDLT 194

This domain is found in a number of proteins involved in cofactor biosynthesis such as dethiobiotin synthase and cobyric acid synthase. This domain contains a P-loop motif. Length = 197

>gnl|CDD|239383 cd03109, DTBS, Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms

 Score = 64.3 bits (157), Expect = 3e-13
 Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 1/96 (1%)

Query: 118 DVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKL 177
           D +++EG GG  VP  ++  +AD+A++L LP ILV    +G IN+A L++EA   +G+ L
Sbjct: 40  DFVLVEGAGGLCVPLKEDFTNADVAKELNLPAILVTSAGLGSINHAFLTIEAARIKGIIL 99

Query: 178 IGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIP 213
            G + N     + L    N   + +   +  LG +P
Sbjct: 100 NGVLGNVIVEKEGLATL-NVETIERLTGIPVLGIVP 134

The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors. Length = 134

>gnl|CDD|232946 TIGR00379, cobB, cobyrinic acid a,c-diamide synthase

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 48/216 (22%), Positives = 84/216 (38%), Gaps = 56/216 (25%)

Query: 11  ITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSN 70
           I GT++ +GKT IS  ++    +R +    ++P   G                       
Sbjct: 4   IAGTSSGVGKTTISTGIMKALSRRKL---RVQPFKVGP---------------------- 38

Query: 71  SLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGF-- 128
                   I+P +F    +   S NL++  ++ + I  C++  S  TD  I+EG+ G   
Sbjct: 39  ------DYIDP-MFHTQATGRPSRNLDSFFMSEAQIQECFHRHSKGTDYSIIEGVRGLYD 91

Query: 129 -SVPFHDNENSADLAEKLGLPIILVIDLK-----IGCINNALLSLEAINSRGLKLIGWVA 182
                 D  ++A +A+ L  PI+LV++ +        I     S +     G+KL G + 
Sbjct: 92  GISAITDYGSTASVAKALDAPIVLVMNCQRLSRSAAAIVLGYRSFD----PGVKLKGVIL 147

Query: 183 NHTQIVDTLFANENYIELTK-----YLNVTPLGRIP 213
           N          +E ++E  K        +  LG IP
Sbjct: 148 NRVG-------SERHLEKLKIAVEPLRGIPILGVIP 176

This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 449

>gnl|CDD|224710 COG1797, CobB, Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]

 Score = 46.8 bits (112), Expect = 3e-06
 Identities = 32/149 (21%), Positives = 61/149 (40%), Gaps = 37/149 (24%)

Query: 10  FITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGA-YLNNKNKIWFNEDVNLLNKY 68
            I GT++  GKT ++  L+   ++RG+    ++P   G  Y                   
Sbjct: 4   VIAGTSSGSGKTTVTLGLMRALRRRGLK---VQPFKVGPDY------------------- 41

Query: 69  SNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGF 128
                     I+P  +    +   S NL++ ++    +   +   +   D+ ++EG+ G 
Sbjct: 42  ----------IDPG-YHTAATGRPSRNLDSWMMGEEGVRALFARAAADADIAVIEGVMGL 90

Query: 129 --SVPFHDNENS-ADLAEKLGLPIILVID 154
                   +  S ADLA+ LG P++LV+D
Sbjct: 91  FDGRGSATDTGSTADLAKLLGAPVVLVVD 119

Length = 451

>gnl|CDD|215526 PLN02974, PLN02974, adenosylmethionine-8-amino-7-oxononanoate transaminase

 Score = 45.9 bits (109), Expect = 9e-06
 Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 18/163 (11%)

Query: 82  YLFKYPISPYTSSNLENRIINTSHIINCYN-YL-------SNLTDVI-ILEGIGGFSVPF 132
           + ++  +SP+ ++  E R ++   ++   N  L       S    V+ ++E  GG + P 
Sbjct: 141 FAWRRAVSPHLAARREGRGVSDDEVLEAVNRSLREVGANESGGGRVLALVETAGGVASPG 200

Query: 133 HDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLF 192
                  DL   L LP ILV D ++G I+  L + E++  RG  ++  V     I D   
Sbjct: 201 PSGTLQCDLYRPLRLPAILVGDGRLGGISATLAAYESLLLRGYDVVAVV-----IEDHGL 255

Query: 193 ANENYIELTKYL-NVTPLGRIPYL-YNLNINLISHYLDFSSLF 233
           +NE    L  YL N  P+  +P +  +   +L   + D  S F
Sbjct: 256 SNEKA--LLSYLSNRVPVFVLPPVPEDPGDDLDEWFDDSKSTF 296

Length = 817

>gnl|CDD|239383 cd03109, DTBS, Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 12/40 (30%), Positives = 22/40 (55%)

Query: 11 ITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYL 50
            GT T+IGKT+ +  L    K++G     +KP+ +  ++
Sbjct: 3  GFGTGTDIGKTVATAILARALKEKGYRVAPLKPVQTYDFV 42

The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors. Length = 134

>gnl|CDD|216631 pfam01656, CbiA, CobQ/CobB/MinD/ParA nucleotide binding domain

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 39/220 (17%), Positives = 67/220 (30%), Gaps = 24/220 (10%)

Query: 10  FITGTNTNIGKTIISCALLSEFKKRGISCIGMKP----IASGAYLNNKNKIWFNEDVNLL 65
            I GT   +GKT ++  L     KRG   + +        S      +  +    ++   
Sbjct: 2   AIAGTKGGVGKTTLAANLARALAKRGYRVLLIDLDPQANNSSYLGKVEEVLPEGLEIVDA 61

Query: 66  NKYSN--SLYEFTKLINPYLFK--YPISPYTSSNLENRIINTSHIIN-CYNYLSNLTDVI 120
                  +    ++ ++P L            S L       S +     + +    D +
Sbjct: 62  QALQAIAAAIVPSRNLDPLLLIPSNLSLENFESELIVEGKRESRLRAALESLIKLAYDYV 121

Query: 121 ILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGC--INNALLSLEAIN-SRGLKL 177
           I++G  G              A  L    ILV+ ++     +  A   LE I     L +
Sbjct: 122 IIDGPPGLGEL---------TANALVAADILVVPIEPEGVAVEGAQRLLELIEDLGVLDI 172

Query: 178 IGWVANHTQIVDTLFANENYIELTKYLNVTPL---GRIPY 214
           +G V N     D          L +   +  L   G IP 
Sbjct: 173 LGVVLNKVDRGDERHLKNEIEALERKTGIPVLVLLGVIPR 212

This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyze amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family. Length = 217

>gnl|CDD|184379 PRK13896, PRK13896, cobyrinic acid a,c-diamide synthase; Provisional

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 6/50 (12%)

Query: 111 NYLSNLTDVIILEGIGGFSVPFHDNENS--ADLAEKLGLPIILVIDLKIG 158
           NY     D+ ++EG+ G     +D + S  A +AE L LP++LV+D K G
Sbjct: 72  NYYRGEGDICVVEGVMGL----YDGDVSSTAMVAEALDLPVVLVVDAKAG 117

Length = 433

>gnl|CDD|234896 PRK01077, PRK01077, cobyrinic acid a,c-diamide synthase; Validated

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 11/56 (19%)

Query: 106 IINCYNYLSNLTDVIILE-------GIGGFSVPFHDNENSADLAEKLGLPIILVID 154
           +   +   +   D+ ++E       G G       D  ++AD+A+ LG P++LV+D
Sbjct: 71  VRALFARAAQGADIAVIEGVMGLFDGAGSDP----DEGSTADIAKLLGAPVVLVVD 122

Length = 451

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	233
COG0132	223	BioD Dethiobiotin synthetase [Coenzyme metabolism]	100.0
PRK12374	231	putative dithiobiotin synthetase; Provisional	100.0
PF13500	199	AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R	100.0
PRK00090	222	bioD dithiobiotin synthetase; Reviewed	100.0
TIGR00347	166	bioD dethiobiotin synthase. Dethiobiotin synthase	99.96
PRK00784	488	cobyric acid synthase; Provisional	99.96
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	99.95
TIGR00313	475	cobQ cobyric acid synthase CobQ.	99.94
PRK01077	451	cobyrinic acid a,c-diamide synthase; Validated	99.93
TIGR00379	449	cobB cobyrinic acid a,c-diamide synthase. This mod	99.92
PRK11670	369	antiporter inner membrane protein; Provisional	99.92
COG1797	451	CobB Cobyrinic acid a,c-diamide synthase [Coenzyme	99.92
COG2894	272	MinD Septum formation inhibitor-activating ATPase	99.92
TIGR01969	251	minD_arch cell division ATPase MinD, archaeal. Thi	99.91
PRK05632	684	phosphate acetyltransferase; Reviewed	99.91
cd02037	169	MRP-like MRP (Multiple Resistance and pH adaptatio	99.91
CHL00175	281	minD septum-site determining protein; Validated	99.91
cd03109	134	DTBS Dethiobiotin synthetase (DTBS) is the penulti	99.9
PRK13896	433	cobyrinic acid a,c-diamide synthase; Provisional	99.9
PRK06278	476	cobyrinic acid a,c-diamide synthase; Validated	99.89
cd02117	212	NifH_like This family contains the NifH (iron prot	99.89
TIGR01968	261	minD_bact septum site-determining protein MinD. Th	99.88
cd02036	179	MinD Bacterial cell division requires the formatio	99.88
PRK13232	273	nifH nitrogenase reductase; Reviewed	99.88
PRK13235	274	nifH nitrogenase reductase; Reviewed	99.87
TIGR01007	204	eps_fam capsular exopolysaccharide family. This mo	99.87
COG0489	265	Mrp ATPases involved in chromosome partitioning [C	99.87
PRK10818	270	cell division inhibitor MinD; Provisional	99.86
PRK13869	405	plasmid-partitioning protein RepA; Provisional	99.86
COG0455	262	flhG Antiactivator of flagellar biosynthesis FleN,	99.86
PRK13233	275	nifH nitrogenase reductase; Reviewed	99.86
TIGR03371	246	cellulose_yhjQ cellulose synthase operon protein Y	99.86
cd03110	179	Fer4_NifH_child This protein family's function is	99.86
PHA02518	211	ParA-like protein; Provisional	99.86
KOG3022|consensus	300		99.86
PRK13185	270	chlL protochlorophyllide reductase iron-sulfur ATP	99.86
cd02040	270	NifH NifH gene encodes component II (iron protein)	99.85
TIGR03029	274	EpsG chain length determinant protein tyrosine kin	99.85
TIGR03453	387	partition_RepA plasmid partitioning protein RepA.	99.84
cd02032	267	Bchl_like This family of proteins contains bchL an	99.84
PRK13849	231	putative crown gall tumor protein VirC1; Provision	99.84
PRK13234	295	nifH nitrogenase reductase; Reviewed	99.84
PRK13236	296	nitrogenase reductase; Reviewed	99.84
TIGR02016	296	BchX chlorophyllide reductase iron protein subunit	99.83
TIGR01281	268	DPOR_bchL light-independent protochlorophyllide re	99.83
CHL00072	290	chlL photochlorophyllide reductase subunit L	99.83
PF01656	195	CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai	99.83
TIGR01287	275	nifH nitrogenase iron protein. This model describe	99.83
PF06564	243	YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ p	99.83
PRK10037	250	cell division protein; Provisional	99.83
PRK13231	264	nitrogenase reductase-like protein; Reviewed	99.83
TIGR03018	207	pepcterm_TyrKin exopolysaccharide/PEPCTERM locus t	99.82
PHA02519	387	plasmid partition protein SopA; Reviewed	99.82
COG1192	259	Soj ATPases involved in chromosome partitioning [C	99.82
TIGR03815	322	CpaE_hom_Actino helicase/secretion neighborhood Cp	99.82
PRK13705	388	plasmid-partitioning protein SopA; Provisional	99.81
cd02033	329	BchX Chlorophyllide reductase converts chlorophyll	99.81
PRK13230	279	nitrogenase reductase-like protein; Reviewed	99.8
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	99.8
COG1149	284	MinD superfamily P-loop ATPase containing an inser	99.79
PRK11519	719	tyrosine kinase; Provisional	99.78
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	99.77
COG1492	486	CobQ Cobyric acid synthase [Coenzyme metabolism]	99.75
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	99.72
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	99.7
cd00550	254	ArsA_ATPase Oxyanion-translocating ATPase (ArsA).	99.7
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	99.68
cd02035	217	ArsA ArsA ATPase functionas as an efflux pump loca	99.64
COG0857	354	Pta BioD-like N-terminal domain of phosphotransace	99.63
cd03111	106	CpaE_like This protein family consists of proteins	99.62
PF00142	273	Fer4_NifH: 4Fe-4S iron sulfur cluster binding prot	99.61
PF09140	261	MipZ: ATPase MipZ; InterPro: IPR015223 Cell divisi	99.61
COG1348	278	NifH Nitrogenase subunit NifH (ATPase) [Inorganic	99.61
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	99.55
TIGR00064	272	ftsY signal recognition particle-docking protein F	99.5
PF02374	305	ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_	99.45
PRK10867	433	signal recognition particle protein; Provisional	99.44
TIGR00959	428	ffh signal recognition particle protein. This mode	99.43
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	99.41
PRK10416	318	signal recognition particle-docking protein FtsY;	99.4
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	99.37
cd03115	173	SRP The signal recognition particle (SRP) mediates	99.36
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	99.34
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	99.32
PF13614	157	AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ	99.32
PRK00771	437	signal recognition particle protein Srp54; Provisi	99.31
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	99.3
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	99.24
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	99.22
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	99.22
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	99.21
COG0003	322	ArsA Predicted ATPase involved in chromosome parti	99.17
PRK13886	241	conjugal transfer protein TraL; Provisional	99.17
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	99.15
PRK14974	336	cell division protein FtsY; Provisional	99.14
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	99.13
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	99.11
cd03114	148	ArgK-like The function of this protein family is u	99.06
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	99.06
COG4963	366	CpaE Flp pilus assembly protein, ATPase CpaE [Intr	99.03
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	99.01
PRK13768	253	GTPase; Provisional	99.0
PRK14493	274	putative bifunctional molybdopterin-guanine dinucl	98.97
KOG0780|consensus	483		98.91
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.91
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	98.85
PRK14494	229	putative molybdopterin-guanine dinucleotide biosyn	98.82
cd02034	116	CooC The accessory protein CooC, which contains a	98.82
COG1763	161	MobB Molybdopterin-guanine dinucleotide biosynthes	98.81
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	98.79
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.79
PRK14495	452	putative molybdopterin-guanine dinucleotide biosyn	98.72
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.7
PRK09435	332	membrane ATPase/protein kinase; Provisional	98.69
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	98.6
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	98.6
TIGR00345	284	arsA arsenite-activated ATPase (arsA). The N-termi	98.55
KOG0781|consensus	587		98.54
PF07755	301	DUF1611: Protein of unknown function (DUF1611); In	98.51
cd03116	159	MobB Molybdenum is an essential trace element in t	98.48
PF10609	81	ParA: ParA/MinD ATPase like; InterPro: IPR019591 T	98.47
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.41
PRK14491	597	putative bifunctional molybdopterin-guanine dinucl	98.39
COG3367	339	Uncharacterized conserved protein [Function unknow	98.38
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	98.38
PRK14489	366	putative bifunctional molybdopterin-guanine dinucl	98.37
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	98.28
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.23
KOG1532|consensus	366		98.2
cd03113	255	CTGs CTP synthetase (CTPs) is a two-domain protein	98.02
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	98.01
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	97.99
COG1341	398	Predicted GTPase or GTP-binding protein [General f	97.89
COG1066	456	Sms Predicted ATP-dependent serine protease [Postt	97.88
PRK13505	557	formate--tetrahydrofolate ligase; Provisional	97.82
PRK05973	237	replicative DNA helicase; Provisional	97.81
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.77
KOG1533|consensus	290		97.74
cd00477	524	FTHFS Formyltetrahydrofolate synthetase (FTHFS) ca	97.73
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	97.65
KOG2825|consensus	323		97.64
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	97.6
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	97.59
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	97.58
PRK04296	190	thymidine kinase; Provisional	97.54
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	97.53
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	97.53
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	97.52
cd00983	325	recA RecA is a bacterial enzyme which has roles in	97.5
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.48
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	97.44
PRK00889	175	adenylylsulfate kinase; Provisional	97.44
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	97.42
COG2403	449	Predicted GTPase [General function prediction only	97.41
PRK11823	446	DNA repair protein RadA; Provisional	97.4
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	97.4
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	97.4
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	97.38
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	97.35
PRK07667	193	uridine kinase; Provisional	97.35
PRK00741	526	prfC peptide chain release factor 3; Provisional	97.34
PF13245	76	AAA_19: Part of AAA domain	97.34
PRK05480	209	uridine/cytidine kinase; Provisional	97.3
PRK15453	290	phosphoribulokinase; Provisional	97.29
PHA00729	226	NTP-binding motif containing protein	97.29
cd01394	218	radB RadB. The archaeal protein radB shares simila	97.29
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.27
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	97.25
PRK09354	349	recA recombinase A; Provisional	97.24
PRK13506	578	formate--tetrahydrofolate ligase; Provisional	97.24
cd00561	159	CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B	97.23
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	97.23
PRK00007	693	elongation factor G; Reviewed	97.19
TIGR02236	310	recomb_radA DNA repair and recombination protein R	97.19
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	97.19
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	97.18
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	97.18
cd00881	189	GTP_translation_factor GTP translation factor fami	97.17
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	97.16
TIGR02237	209	recomb_radB DNA repair and recombination protein R	97.16
COG1484	254	DnaC DNA replication protein [DNA replication, rec	97.16
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	97.13
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	97.12
PRK08233	182	hypothetical protein; Provisional	97.09
PRK06526	254	transposase; Provisional	97.08
PRK06696	223	uridine kinase; Validated	97.08
PRK07952	244	DNA replication protein DnaC; Validated	97.07
PRK12739	691	elongation factor G; Reviewed	97.04
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	97.03
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	97.03
PF01935	229	DUF87: Domain of unknown function DUF87; InterPro:	97.03
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	97.01
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	96.99
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	96.98
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	96.98
PF00154	322	RecA: recA bacterial DNA recombination protein; In	96.97
PRK09183	259	transposase/IS protein; Provisional	96.97
TIGR00682	311	lpxK tetraacyldisaccharide 4'-kinase. Also called	96.97
PRK05541	176	adenylylsulfate kinase; Provisional	96.96
TIGR00503	527	prfC peptide chain release factor 3. This translat	96.95
PRK03846	198	adenylylsulfate kinase; Provisional	96.93
PRK00652	325	lpxK tetraacyldisaccharide 4'-kinase; Reviewed	96.93
PF06418	276	CTP_synth_N: CTP synthase N-terminus; InterPro: IP	96.92
PRK12377	248	putative replication protein; Provisional	96.9
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	96.89
TIGR02238	313	recomb_DMC1 meiotic recombinase Dmc1. This model d	96.88
PRK08118	167	topology modulation protein; Reviewed	96.87
PLN03187	344	meiotic recombination protein DMC1 homolog; Provis	96.87
smart00382	148	AAA ATPases associated with a variety of cellular	96.85
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	96.85
PRK08939	306	primosomal protein DnaI; Reviewed	96.85
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	96.84
PRK08181	269	transposase; Validated	96.81
TIGR00235	207	udk uridine kinase. Model contains a number of lon	96.81
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	96.81
PRK04040	188	adenylate kinase; Provisional	96.79
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	96.79
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	96.79
PRK06835	329	DNA replication protein DnaC; Validated	96.77
PF02606	326	LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPr	96.73
KOG0635|consensus	207		96.72
PF12846	304	AAA_10: AAA-like domain	96.69
PLN03127	447	Elongation factor Tu; Provisional	96.69
PRK01906	338	tetraacyldisaccharide 4'-kinase; Provisional	96.69
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	96.68
PRK08533	230	flagellar accessory protein FlaH; Reviewed	96.68
cd03112	158	CobW_like The function of this protein family is u	96.68
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	96.67
PRK06762	166	hypothetical protein; Provisional	96.67
PRK10218	607	GTP-binding protein; Provisional	96.67
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	96.66
COG0468	279	RecA RecA/RadA recombinase [DNA replication, recom	96.65
PRK08727	233	hypothetical protein; Validated	96.64
PRK06893	229	DNA replication initiation factor; Validated	96.64
COG2109	198	BtuR ATP:corrinoid adenosyltransferase [Coenzyme m	96.62
PHA02542	473	41 41 helicase; Provisional	96.61
PRK13351	687	elongation factor G; Reviewed	96.61
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	96.61
PRK14527	191	adenylate kinase; Provisional	96.61
PRK05433	600	GTP-binding protein LepA; Provisional	96.58
PTZ00035	337	Rad51 protein; Provisional	96.57
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	96.57
PRK06921	266	hypothetical protein; Provisional	96.56
PRK06851	367	hypothetical protein; Provisional	96.56
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	96.55
PRK06067	234	flagellar accessory protein FlaH; Validated	96.55
PRK04301	317	radA DNA repair and recombination protein RadA; Va	96.55
PLN02924	220	thymidylate kinase	96.54
KOG3347|consensus	176		96.52
PRK07933	213	thymidylate kinase; Validated	96.52
PRK00049	396	elongation factor Tu; Reviewed	96.52
PRK06217	183	hypothetical protein; Validated	96.52
PRK05439	311	pantothenate kinase; Provisional	96.51
PRK00089	292	era GTPase Era; Reviewed	96.5
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	96.49
PF13481	193	AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.	96.48
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	96.47
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	96.46
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	96.45
CHL00071	409	tufA elongation factor Tu	96.42
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	96.41
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	96.41
PRK08084	235	DNA replication initiation factor; Provisional	96.39
PRK06761	282	hypothetical protein; Provisional	96.39
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	96.37
TIGR00708	173	cobA cob(I)alamin adenosyltransferase. Alternate n	96.36
PF03796	259	DnaB_C: DnaB-like helicase C terminal domain; Inte	96.36
PRK05380	533	pyrG CTP synthetase; Validated	96.35
PRK05642	234	DNA replication initiation factor; Validated	96.34
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	96.34
PTZ00301	210	uridine kinase; Provisional	96.33
PRK00698	205	tmk thymidylate kinase; Validated	96.31
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	96.3
COG4240	300	Predicted kinase [General function prediction only	96.3
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	96.29
PF13479	213	AAA_24: AAA domain	96.29
PF05729	166	NACHT: NACHT domain	96.27
PRK13947	171	shikimate kinase; Provisional	96.26
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	96.26
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	96.25
PRK08116	268	hypothetical protein; Validated	96.25
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	96.24
PRK11537	318	putative GTP-binding protein YjiA; Provisional	96.22
KOG3220|consensus	225		96.22
TIGR00101	199	ureG urease accessory protein UreG. This model rep	96.21
PRK03731	171	aroL shikimate kinase II; Reviewed	96.2
PRK09519	790	recA DNA recombination protein RecA; Reviewed	96.16
PLN03186	342	DNA repair protein RAD51 homolog; Provisional	96.15
PRK08903	227	DnaA regulatory inactivator Hda; Validated	96.15
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	96.13
PRK06547	172	hypothetical protein; Provisional	96.13
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	96.13
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	96.12
KOG1534|consensus	273		96.12
COG1435	201	Tdk Thymidine kinase [Nucleotide transport and met	96.11
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	96.11
PRK12736	394	elongation factor Tu; Reviewed	96.09
COG1159	298	Era GTPase [General function prediction only]	96.06
KOG2749|consensus	415		96.03
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	96.02
PRK13973	213	thymidylate kinase; Provisional	96.02
COG1855	604	ATPase (PilT family) [General function prediction	96.01
TIGR00485	394	EF-Tu translation elongation factor TU. This align	96.0
PF01268	557	FTHFS: Formate--tetrahydrofolate ligase; InterPro:	95.99
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	95.98
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	95.97
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	95.97
PRK00131	175	aroK shikimate kinase; Reviewed	95.95
PRK06851	367	hypothetical protein; Provisional	95.94
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	95.94
PRK05595	444	replicative DNA helicase; Provisional	95.93
PTZ00141	446	elongation factor 1- alpha; Provisional	95.92
PRK07261	171	topology modulation protein; Provisional	95.91
PF05970	364	PIF1: PIF1-like helicase; InterPro: IPR010285 This	95.89
COG0504	533	PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide	95.88
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	95.87
PRK04328	249	hypothetical protein; Provisional	95.86
PLN03126	478	Elongation factor Tu; Provisional	95.84
PRK08760	476	replicative DNA helicase; Provisional	95.84
TIGR03600	421	phage_DnaB phage replicative helicase, DnaB family	95.84
PLN03046	460	D-glycerate 3-kinase; Provisional	95.84
PRK13949	169	shikimate kinase; Provisional	95.82
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	95.81
COG1663	336	LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell env	95.79
PRK12735	396	elongation factor Tu; Reviewed	95.79
PRK01184	184	hypothetical protein; Provisional	95.77
PLN02796	347	D-glycerate 3-kinase	95.76
PF00004	132	AAA: ATPase family associated with various cellula	95.76
TIGR02239	316	recomb_RAD51 DNA repair protein RAD51. This eukary	95.75
PRK08506	472	replicative DNA helicase; Provisional	95.74
PLN02327	557	CTP synthase	95.7
PRK03839	180	putative kinase; Provisional	95.69
PRK12338	319	hypothetical protein; Provisional	95.68
TIGR00665	434	DnaB replicative DNA helicase. This model describe	95.67
PF13173	128	AAA_14: AAA domain	95.67
PRK14528	186	adenylate kinase; Provisional	95.67
PRK14530	215	adenylate kinase; Provisional	95.65
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	95.65
PRK06749	428	replicative DNA helicase; Provisional	95.64
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	95.64
PF08423	256	Rad51: Rad51; InterPro: IPR013632 This domain is f	95.63
TIGR00337	525	PyrG CTP synthase. CTP synthase is involved in pyr	95.62
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	95.6
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	95.58
COG1160	444	Predicted GTPases [General function prediction onl	95.57
PRK14531	183	adenylate kinase; Provisional	95.56
PRK08006	471	replicative DNA helicase; Provisional	95.55
PRK00300	205	gmk guanylate kinase; Provisional	95.53
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	95.53
PRK13507	587	formate--tetrahydrofolate ligase; Provisional	95.53
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	95.53
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	95.52
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	95.49
PRK12339	197	2-phosphoglycerate kinase; Provisional	95.49
PRK02496	184	adk adenylate kinase; Provisional	95.48
PRK10846	416	bifunctional folylpolyglutamate synthase/ dihydrof	95.48
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	95.47
PRK05748	448	replicative DNA helicase; Provisional	95.46
cd00046	144	DEXDc DEAD-like helicases superfamily. A diverse f	95.43
PLN02759	637	Formate--tetrahydrofolate ligase	95.41
PRK09165	497	replicative DNA helicase; Provisional	95.41
PRK13975	196	thymidylate kinase; Provisional	95.41
PRK08840	464	replicative DNA helicase; Provisional	95.39
PRK05986	191	cob(I)alamin adenolsyltransferase/cobinamide ATP-d	95.39
PRK07429	327	phosphoribulokinase; Provisional	95.38
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	95.36
PLN02200	234	adenylate kinase family protein	95.36
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	95.34
PRK13695	174	putative NTPase; Provisional	95.34
PLN00043	447	elongation factor 1-alpha; Provisional	95.34
PF09848	352	DUF2075: Uncharacterized conserved protein (DUF207	95.33
PRK12422	445	chromosomal replication initiation protein; Provis	95.33
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	95.33
PRK06904	472	replicative DNA helicase; Validated	95.31
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	95.31
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	95.31
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	95.3
PRK05057	172	aroK shikimate kinase I; Reviewed	95.26
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	95.24
PF02223	186	Thymidylate_kin: Thymidylate kinase; InterPro: IPR	95.23
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	95.22
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	95.2
TIGR00376	637	DNA helicase, putative. The gene product may repre	95.19
PRK09302	509	circadian clock protein KaiC; Reviewed	95.18
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	95.17
PRK06321	472	replicative DNA helicase; Provisional	95.16
PHA02530	300	pseT polynucleotide kinase; Provisional	95.15
PRK04220	301	2-phosphoglycerate kinase; Provisional	95.14
TIGR03754	643	conj_TOL_TraD conjugative coupling factor TraD, TO	95.13
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	95.1
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	95.09
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	95.09
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	95.08
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	95.08
PRK13764	602	ATPase; Provisional	95.06
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	95.06
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	95.06
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	95.05
PRK00625	173	shikimate kinase; Provisional	95.04
PLN02165	334	adenylate isopentenyltransferase	95.0
KOG2004|consensus	906		94.94
PTZ00386	625	formyl tetrahydrofolate synthetase; Provisional	94.92
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	94.91
COG3911	183	Predicted ATPase [General function prediction only	94.91
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	94.89
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	94.86
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	94.86
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	94.85
PRK05636	505	replicative DNA helicase; Provisional	94.84
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	94.84
PRK00023	225	cmk cytidylate kinase; Provisional	94.82
PRK07004	460	replicative DNA helicase; Provisional	94.82
PRK13946	184	shikimate kinase; Provisional	94.8
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	94.8
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	94.79
PRK04182	180	cytidylate kinase; Provisional	94.79
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	94.77
PRK14730	195	coaE dephospho-CoA kinase; Provisional	94.77
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	94.76
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	94.75
PF00265	176	TK: Thymidine kinase; InterPro: IPR001267 Thymidin	94.73
KOG0991|consensus	333		94.72
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	94.67
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	94.65
PRK14734	200	coaE dephospho-CoA kinase; Provisional	94.65
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	94.64
PRK13948	182	shikimate kinase; Provisional	94.64
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	94.63
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	94.62
PRK07560	731	elongation factor EF-2; Reviewed	94.61
PTZ00088	229	adenylate kinase 1; Provisional	94.6
KOG0744|consensus	423		94.6
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	94.56
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	94.55
PF10412	386	TrwB_AAD_bind: Type IV secretion-system coupling p	94.54
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	94.53
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	94.48
PRK00149	450	dnaA chromosomal replication initiation protein; R	94.45
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	94.44
CHL00181	287	cbbX CbbX; Provisional	94.43
PRK09302	509	circadian clock protein KaiC; Reviewed	94.43
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	94.42
COG2874	235	FlaH Predicted ATPases involved in biogenesis of a	94.39
PLN02348	395	phosphoribulokinase	94.35
TIGR03172	232	probable selenium-dependent hydroxylase accessory	94.33
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	94.32
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	94.32
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	94.31
TIGR03743	634	SXT_TraD conjugative coupling factor TraD, SXT/TOL	94.26
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	94.25
KOG3062|consensus	281		94.23
PRK13976	209	thymidylate kinase; Provisional	94.2
PRK14532	188	adenylate kinase; Provisional	94.19
TIGR02746	797	TraC-F-type type-IV secretion system protein TraC.	94.17
PRK07414	178	cob(I)yrinic acid a,c-diamide adenosyltransferase;	94.16
COG2759	554	MIS1 Formyltetrahydrofolate synthetase [Nucleotide	94.15
PRK14088	440	dnaA chromosomal replication initiation protein; P	94.13
PRK14738	206	gmk guanylate kinase; Provisional	94.07
PF01580	205	FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR00	94.07
PF02562	205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	94.05
PRK13700	732	conjugal transfer protein TraD; Provisional	94.04
PRK14731	208	coaE dephospho-CoA kinase; Provisional	93.99
PRK12317	425	elongation factor 1-alpha; Reviewed	93.98
PLN02422	232	dephospho-CoA kinase	93.98
PRK00279	215	adk adenylate kinase; Reviewed	93.91
PF01591	222	6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR0130	93.91
PRK08099	399	bifunctional DNA-binding transcriptional repressor	93.9
TIGR01499	397	folC folylpolyglutamate synthase/dihydrofolate syn	93.87
COG0050	394	TufB GTPases - translation elongation factors [Tra	93.85
PRK10536	262	hypothetical protein; Provisional	93.84
TIGR01085	464	murE UDP-N-acetylmuramyl-tripeptide synthetase. A	93.82
PRK14733	204	coaE dephospho-CoA kinase; Provisional	93.82
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	93.81
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	93.8
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	93.79
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	93.75
COG1110	1187	Reverse gyrase [DNA replication, recombination, an	93.73
KOG0462|consensus	650		93.72
PRK08356	195	hypothetical protein; Provisional	93.68
PLN02674	244	adenylate kinase	93.67
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	93.64
PRK12740	668	elongation factor G; Reviewed	93.62
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	93.58
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.54
TIGR02768	744	TraA_Ti Ti-type conjugative transfer relaxase TraA	93.49
PRK00139	460	murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-d	93.47
PRK13721	844	conjugal transfer ATP-binding protein TraC; Provis	93.47
cd01127	410	TrwB Bacterial conjugation protein TrwB, ATP bindi	93.46
PRK07773	886	replicative DNA helicase; Validated	93.46
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	93.41
PLN02748	468	tRNA dimethylallyltransferase	93.39
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.39
TIGR00929	785	VirB4_CagE type IV secretion/conjugal transfer ATP	93.38
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	93.36
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	93.35
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	93.34
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	93.31
TIGR03783	829	Bac_Flav_CT_G Bacteroides conjugation system ATPas	93.28
PLN02840	421	tRNA dimethylallyltransferase	93.24
TIGR01448	720	recD_rel helicase, putative, RecD/TraA family. Thi	93.24

>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]

Probab=100.00  E-value=4.3e-38  Score=249.05  Aligned_cols=219  Identities=37%  Similarity=0.619  Sum_probs=193.9

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeee
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLF   84 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~   84 (233)
                      ||+.|+|||+.+|||||++|+.|+++++++|++|.++||+++|.+...  +   ++|..++++.+++..++ +.++|+.|
T Consensus         1 m~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~KPVqsG~~~~~--~---~~D~~~l~~~~~~~~~~-~~~~py~f   74 (223)
T COG0132           1 MMKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGYKPVQTGSEETA--E---NSDALVLQRLSGLDLSY-ELINPYRF   74 (223)
T ss_pred             CCceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEEECceeeCCCCCC--C---CchHHHHHHhcCCCccc-ccccceec
Confidence            578999999999999999999999999999999999999999887543  1   46899999999987666 67889999


Q ss_pred             cCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHH
Q psy14904         85 KYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNAL  164 (233)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~  164 (233)
                      ..|.+|++++..++..++.+.+...+.++.+.||+|||||+||+.+|+++.++.+|++..+..|+|+|+..++|++|+++
T Consensus        75 ~~P~sPhlAa~~eg~~I~~~~l~~~l~~l~~~~d~vlVEGAGGl~vPl~~~~~~~D~~~~~~lpvILV~~~~LGtINHtl  154 (223)
T COG0132          75 KEPLSPHLAAELEGRTIDLEKLSQGLRQLLKKYDLVLVEGAGGLLVPLTEEYTFADLAVQLQLPVILVVGIKLGTINHTL  154 (223)
T ss_pred             CCCCCcHHHHhhcCCcccHHHHHHHHHhhhcccCEEEEeCCCceeeecCCcccHHHHHHHcCCCEEEEecCCccHHHHHH
Confidence            99999999999998888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCChhhhhhhcCCC
Q psy14904        165 LSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNINLISHYLDFS  230 (233)
Q Consensus       165 ~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~~~~~~~~~~~  230 (233)
                      .+++.+++.++++.|+|+|+++ +......+....+++..+.|++|.+|+.++.......++.+++
T Consensus       155 Lt~eal~~~gl~l~G~I~n~~~-~~~~~~~~~~~~l~~~~~~p~~g~~p~~~~~~~~~~~~~~~l~  219 (223)
T COG0132         155 LTVEALRARGLPLAGWVANGIN-PELDHYAEINATLLKRIGAPLLGIIPYLPESEEEELGKLIDLA  219 (223)
T ss_pred             HHHHHHHHCCCCEEEEEEccCC-CchhHHHHHHHHHHHhcCCCccccccCCccccchhhhhhhhhH
Confidence            9999999999999999999998 6554444455578888999999999998876544444444443

>PRK12374 putative dithiobiotin synthetase; Provisional

Probab=100.00  E-value=1.3e-34  Score=234.53  Aligned_cols=219  Identities=32%  Similarity=0.494  Sum_probs=185.2

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeee
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLF   84 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~   84 (233)
                      |++.|+|+++.+++|||++|++|+.+|.++|++|.++||+++++...+  .++.+.|+.++++.++.+.++ +.++|+.+
T Consensus         1 m~~~ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v~~~KPi~~g~~~~~--~~~~~~D~~~l~~~~~~~~~~-~~~~p~~~   77 (231)
T PRK12374          1 MLKRFFITGTDTSVGKTVVSRALLQALASQGKTVAGYKPVAKGSKETP--EGLRNKDALVLQSVSSIELPY-EAVNPIAL   77 (231)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEECccccCCccCC--CCCchHHHHHHHHhcCCCCCH-HhccCeec
Confidence            456799999999999999999999999999999999999998865332  345567888888888876665 56677766


Q ss_pred             cCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHH
Q psy14904         85 KYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNAL  164 (233)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~  164 (233)
                      ..+    .++..++...+.+++.+.+++++++||+|||||++|+.+|+......+|++.+.+.|+++|+...++++++++
T Consensus        78 ~~~----~a~~~~~~~i~~~~i~~~~~~l~~~~D~VlVEGaGgl~~p~~~~~~~~d~~~~~~~pvilV~~~~lg~in~~l  153 (231)
T PRK12374         78 SEE----ESSVAHSCPINYTLMSNGLANLSEKVDHVVVEGTGGWRSLMNDLRPLSEWVVQEQLPVLMVVGIQEGCINHAL  153 (231)
T ss_pred             CCC----cChHHcCCcCCHHHHHHHHHHHHhhCCEEEEECCCCcceeccCcccHHHHHHHhCCCEEEEECCCcChHHHHH
Confidence            543    2333445556678899999889999999999999999999987778999999999999999999999999999


Q ss_pred             HHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCChhhhhhhcCCCC
Q psy14904        165 LSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNINLISHYLDFSS  231 (233)
Q Consensus       165 ~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~~~~~~~~~~~~  231 (233)
                      .+.+.++..+++++|+|+|+++ +......++.+.+++..++|++|.||+.+.+....++++|+++.
T Consensus       154 Lt~~~l~~~~~~~~gvV~N~~~-~~~~~~~~~~~~l~~~~~~~~lg~iP~~~~~~~~~~~~~l~~~~  219 (231)
T PRK12374        154 LTAQAIANDGLPLIGWVANRIN-PGLAHYAEIIDVLGKKLPAPLIGELPYLPRAEQRELGQYIDLSM  219 (231)
T ss_pred             HHHHHHHhCCCcEEEEEEeCcc-CchhhhhhHHHHHHHhcCCCEEEEeCCCCCCChHHHHhhcChhh
Confidence            9999999999999999999998 65444456678888888999999999998888778888888764

>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A

Probab=100.00  E-value=1.2e-34  Score=230.07  Aligned_cols=199  Identities=35%  Similarity=0.549  Sum_probs=163.6

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeecC
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKY   86 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~   86 (233)
                      |.|+|+++.+++|||+++++|+++|.++|.+|.++||++++...        ++|..+++..+++..+. +.+.++.+..
T Consensus         1 r~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~~~KPi~~~~~~--------d~d~~~~~~~~~~~~~~-~~~~~~~~~~   71 (199)
T PF13500_consen    1 RTIFITGTDTGVGKTVVSLGLARALRRRGIKVGYFKPIQTGPED--------DEDAELIRELFGLSEPP-DDPSPYTFDE   71 (199)
T ss_dssp             -EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEEEEEEEEESCCC--------SSHHHHHHHHCCTCCCH-HHHECEEESS
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHHHHhCCCceEEEeeeEecCCC--------CchHHHHHHHhCCCccc-ccccccccCc
Confidence            57999999999999999999999999999999999999987763        24888888888876654 4567888998


Q ss_pred             CCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHH
Q psy14904         87 PISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLS  166 (233)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~  166 (233)
                      +.+++.++..++.....+++.  ++++++++|++||||+++..+|.....+++++++.+++|+++|++.+.++++++..+
T Consensus        72 ~~~~~~~~~~~~~~~~~~~i~--~~~l~~~~D~vlVEGag~~~~~~~~~~~n~dia~~L~a~vIlV~~~~~g~i~~~l~~  149 (199)
T PF13500_consen   72 PASPHLAAELEGVDIDLERII--YKELAEEYDVVLVEGAGGLMVPIFSGDLNADIAKALGAPVILVASGRLGTINHTLLT  149 (199)
T ss_dssp             SS-HHHHHHHHT----HHHHH--HHHCHTTTCEEEEEESSSTTSECCTTEEHHHHHHHHT-EEEEEEESSTTHHHHHHHH
T ss_pred             ccCHHHHhhccCCcccHHHHH--HHHHhhcCCEEEEeCCcccCcccccChHHHHHHHHcCCCEEEEeCCCCCCHHHHHHH
Confidence            889998887777655566665  688889999999999999999988889999999999999999999999999999999


Q ss_pred             HHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCChhh
Q psy14904        167 LEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNINL  222 (233)
Q Consensus       167 ~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~~~  222 (233)
                      ++.+++.|++++|+|+|+++ +.     +..+.+++..++|++|+||+++.+++|+
T Consensus       150 ~~~~~~~g~~v~GvI~N~~~-~~-----~~~~~l~~~~~i~vlg~iP~~~~L~~p~  199 (199)
T PF13500_consen  150 IEALKQRGIRVLGVILNRVP-EP-----ENLEALREKSGIPVLGVIPEDPDLSAPT  199 (199)
T ss_dssp             HHHHHCTTS-EEEEEEEECT-CC-----HHHHHHHHHHCCEECE---SSTT-----
T ss_pred             HHHHHhcCCCEEEEEEECCC-CH-----HHHHHHHHhCCCCEEEECCCCcccccCC
Confidence            99999999999999999987 32     4788888889999999999999999874

...

>PRK00090 bioD dithiobiotin synthetase; Reviewed

Probab=100.00  E-value=3.7e-34  Score=230.85  Aligned_cols=217  Identities=38%  Similarity=0.669  Sum_probs=186.6

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeecCC
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKYP   87 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (233)
                      .|+|+++.+|+|||+++++|+++|+++|++|.++||+++++....     .+.|..++.+.++++.++ ..++++.+..|
T Consensus         1 ~i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~KPv~~g~~~~~-----~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~   74 (222)
T PRK00090          1 RLFVTGTDTDVGKTVVTAALAQALREAGYSVAGYKPVQSGCEETD-----RNGDALALQRLSGLPLDY-EDVNPYRFEEP   74 (222)
T ss_pred             CEEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEeeEecCCCCCC-----CcHHHHHHHHHcCCCCCh-hhcCceeeCCC
Confidence            389999999999999999999999999999999999998765311     235888888888876554 55678888889


Q ss_pred             CChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHH
Q psy14904         88 ISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSL  167 (233)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~  167 (233)
                      .+|++++.+++.....+++.+.+++++++||+|||||+||+..|+...+.++|+++.+++|+++|+..+.++++++..++
T Consensus        75 ~sp~~a~~~~~~~~~~~~i~~~~~~l~~~~D~viIEg~gg~~~~~~~~~~~adl~~~l~~pvilV~~~~~~~i~~~~~~i  154 (222)
T PRK00090         75 LSPHLAAALEGVAIDLEKISAALRRLAQQYDLVLVEGAGGLLVPLTEDLTLADLAKQLQLPVILVVGVKLGCINHTLLTL  154 (222)
T ss_pred             CCHHHHHHHhCCCCCHHHHHHHHHHHHhhCCEEEEECCCceeccCCCCCcHHHHHHHhCCCEEEEECCCCcHHHHHHHHH
Confidence            99999887777767788999999999999999999999999888877788999999999999999999999999999999


Q ss_pred             HHHHhCCCcEEEEEEcccCCCc-hhhhhhhHHHHHhhcCCCceEecCCCCCCChhhhhhhcCCCC
Q psy14904        168 EAINSRGLKLIGWVANHTQIVD-TLFANENYIELTKYLNVTPLGRIPYLYNLNINLISHYLDFSS  231 (233)
Q Consensus       168 ~~l~~~~~~i~GiVlN~~~~~~-~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~~~~~~~~~~~~  231 (233)
                      +.+++.++++.|+|+|+++ ++ ....++..+.+++.+++|++|.||+........+.++++.+.
T Consensus       155 ~~l~~~~~~i~gvIlN~~~-~~~~~~~~~~~~~l~~~~gi~vlg~ip~~~~~~~~~~~~~~~~~~  218 (222)
T PRK00090        155 EAIRARGLPLAGWVANGIP-PEPGLRHAENLATLERLLPAPLLGELPYLAEAELAAAAEYLDLDL  218 (222)
T ss_pred             HHHHHCCCCeEEEEEccCC-CcchhHHHHHHHHHHHHcCCCeEEecCCCCCcchHHHHhhCCHHh
Confidence            9998889999999999998 65 445567788999999999999999976666667777777654

>TIGR00347 bioD dethiobiotin synthase

Probab=99.96  E-value=6.1e-28  Score=186.15  Aligned_cols=166  Identities=37%  Similarity=0.628  Sum_probs=139.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeecCCCC
Q psy14904         10 FITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKYPIS   89 (233)
Q Consensus        10 ~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (233)
                      +|+++.+|+||||++++|+.+|+++|+||+++||++++....       +.|..++++..+...++ +.+.++.+..|.+
T Consensus         1 fI~~t~~~~GKT~va~~L~~~l~~~g~~V~~~kP~~~~~~~~-------d~d~~~i~~~~~~~~~~-~~~~~~~~~~~~~   72 (166)
T TIGR00347         1 FVTGTDTGVGKTVASSALAAKLKKAGYSVGYYKPVQTGIEKT-------NSDALLLQNISGTALDW-DEVNPYAFALPLS   72 (166)
T ss_pred             CeecCCCCccHHHHHHHHHHHHHHCCCcEEEEEeeeeCCCCC-------chHHHHHHHHcCCCCch-hccCCeeeCCCCC
Confidence            589999999999999999999999999999999999875422       24677777766655444 4455666666666


Q ss_pred             hhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHH
Q psy14904         90 PYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEA  169 (233)
Q Consensus        90 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~  169 (233)
                      |.......+.....+++.+.+++++++||+|||||++|+..|+.....++++++.+++++|+|++.+.++++++..+.+.
T Consensus        73 p~~~~~~~~~~~~~~~i~~~~~~l~~~~D~viid~~g~~~~~~~~~~~~~dl~~~~~~~vilV~~~~~~~~~~~~~~~~~  152 (166)
T TIGR00347        73 PHIAADQEGRPIDLEELSKHLRTLEQKYDFVLVEGAGGLCVPITEEYTTADLIKLLQLPVILVVRVKLGTINHTLLTVEH  152 (166)
T ss_pred             hHHHHHHhCCCCCHHHHHHHHHHHHhcCCEEEEEcCCccccCCCCCCcHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHH
Confidence            66655444445567789999999999999999999999988887777899999999999999999999999999999999


Q ss_pred             HHhCCCcEEEEEEc
Q psy14904        170 INSRGLKLIGWVAN  183 (233)
Q Consensus       170 l~~~~~~i~GiVlN  183 (233)
                      +++.++++.|+|+|
T Consensus       153 l~~~~~~i~gvv~N  166 (166)
T TIGR00347       153 ARQTGLTLAGVILN  166 (166)
T ss_pred             HHHCCCCeEEEEeC
Confidence            99999999999998

Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.

>PRK00784 cobyric acid synthase; Provisional

Probab=99.96  E-value=1.9e-27  Score=211.41  Aligned_cols=212  Identities=20%  Similarity=0.265  Sum_probs=159.4

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCccc--CCCCCCccchHHHHHHHH-hCCCcccccceee
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYL--NNKNKIWFNEDVNLLNKY-SNSLYEFTKLINP   81 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~--~~~~~~l~~~d~~~~~~~-~~~~~~~~~~~~~   81 (233)
                      |||.|+|+|+.+|||||++|++|+++|+++|++|.++||++.....  .+  ++....|+.++++. .+.. +. +.++|
T Consensus         1 m~~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kpv~~~~~~~~~~--dg~~~~Da~~l~~~~~~~~-~~-~~i~P   76 (488)
T PRK00784          1 MAKALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKAQNMSLNSAVTA--DGGEIGRAQALQAEAAGVE-PS-VDMNP   76 (488)
T ss_pred             CCceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccchhccccceECC--CCCeeHHHHHHHHHhCCCC-ch-hccCC
Confidence            4788999999999999999999999999999999999997422110  11  12223577777654 4443 22 46778


Q ss_pred             eeecCCCChhhhh-hh--------------cCCCCCHHHHHHHHHHhhcCCCeEEEeccCccc-CccCC-CCchHHHHHH
Q psy14904         82 YLFKYPISPYTSS-NL--------------ENRIINTSHIINCYNYLSNLTDVIILEGIGGFS-VPFHD-NENSADLAEK  144 (233)
Q Consensus        82 ~~~~~~~~~~~~~-~~--------------~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~-~p~~~-~~~~~~l~~~  144 (233)
                      +.+. |.+|+.++ ..              ++.....+++.+.+++++++||++||||++|+. .|+.. ..+++++|+.
T Consensus        77 ~~~~-~~sp~~a~~~~~g~~~~~l~a~~~~~~~~~~~~~I~~~~~~l~~~~D~vIVEGaGg~~~~~L~~~~~~~~dlak~  155 (488)
T PRK00784         77 VLLK-PQSDRGSQVIVQGKPVGNMDARDYHDYKPRLLEAVLESLDRLAAEYDVVVVEGAGSPAEINLRDRDIANMGFAEA  155 (488)
T ss_pred             EEec-CCCCCcceEEEcCccccccCHHHHhhcchhhHHHHHHHHHHHHhcCCEEEEECCCCccccCcccCCchhHHHHHH
Confidence            7664 55555432 11              223355788999999898999999999999987 45532 4679999999


Q ss_pred             hCCCEEEEEcCCCC-cHHHHHHHHHHHHh-CCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCChhh
Q psy14904        145 LGLPIILVIDLKIG-CINNALLSLEAINS-RGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNINL  222 (233)
Q Consensus       145 ~~~~vllV~~~~~~-~~~~~~~~~~~l~~-~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~~~  222 (233)
                      +++|+|+|++.+.+ +++++..+.+.++. .+++++|+|+|+++ +.....++..+.+++..++|++|.||+++.+..+.
T Consensus       156 l~~PVILV~~~~~g~~~~~i~~~~~~l~~~~~~~i~GvI~N~v~-~~~~~~~~~~~~l~~~~gipvLG~iP~~~~L~~~~  234 (488)
T PRK00784        156 ADAPVILVADIDRGGVFASLVGTLALLPPEERARVKGFIINKFR-GDISLLEPGLDWLEELTGVPVLGVLPYLDDLRLPA  234 (488)
T ss_pred             cCCCEEEEEeCCcCcHHHHHHHHHHhcChhhCCcEEEEEEECCC-CCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCcCh
Confidence            99999999999887 57777767677663 35799999999998 64333456667788888999999999999876553

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.95  E-value=1.4e-25  Score=207.93  Aligned_cols=209  Identities=22%  Similarity=0.286  Sum_probs=166.2

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHh---------------
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYS---------------   69 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~---------------   69 (233)
                      ..+.++|+|+.++||||.+++.|+.+++++|.+|.++||+++|+...        .|..++.+..               
T Consensus        26 ~~~~~fI~GtnT~VGKT~vS~~L~~~~~~~g~~~~y~KPvqTG~~~~--------~Da~~v~~~~~~~~~~~~~~~~~~~   97 (817)
T PLN02974         26 SCPAFAVWGANTAVGKTLVSAGLAAAAASRRSPVLYVKPVQTGFPDD--------SDARFVFRKADSLSRRSESLFASNR   97 (817)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEEEECCCCCC--------ccHHHHHHhhhcccccccccccccc
Confidence            46789999999999999999999999999999999999999987431        2444444321               


Q ss_pred             ---------------------------CCCc---ccc-cceeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhh----
Q psy14904         70 ---------------------------NSLY---EFT-KLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLS----  114 (233)
Q Consensus        70 ---------------------------~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~----  114 (233)
                                                 |...   ... ...+++.+..|.+|++++..++..++.+.|.+.++++.    
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~SPhlAA~~eg~~i~~~~i~~~~~~~l~~~~  177 (817)
T PLN02974         98 TLFLSPPAAKSALGGVSSMGAHAAVNAGAEAGVTSSALWCHTLFAWRRAVSPHLAARREGRGVSDDEVLEAVNRSLREVG  177 (817)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccCceecCCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHhhh
Confidence                                       1110   000 11256788899999999988888888888888887632    


Q ss_pred             -----cCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCc
Q psy14904        115 -----NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVD  189 (233)
Q Consensus       115 -----~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~  189 (233)
                           +.+|++||||+||+.+|+....+.+|+++.++.|+|+|++..+|++++++.+++.++.+|+++.|+|+|...   
T Consensus       178 ~~~~~~~~d~vlVEGAGGl~vPl~~~~~~~Dl~~~l~lPvILV~~~~LG~INhtllt~eaL~~rGi~v~gii~~~~~---  254 (817)
T PLN02974        178 ANESGGGRVLALVETAGGVASPGPSGTLQCDLYRPLRLPAILVGDGRLGGISATLAAYESLLLRGYDVVAVVIEDHG---  254 (817)
T ss_pred             cccccccCCeEEEECCCcccccCCCCCCHHHHHHHhCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEeCCc---
Confidence                 258999999999999999999999999999999999999999999999999999999999999999999533   


Q ss_pred             hhhhhhhHHHHHhhc--CCCceEecCCCCCCChhhhhhhcCC
Q psy14904        190 TLFANENYIELTKYL--NVTPLGRIPYLYNLNINLISHYLDF  229 (233)
Q Consensus       190 ~~~~~~~~~~l~~~~--~~pvlg~IP~~~~l~~~~~~~~~~~  229 (233)
                          .++.+.|++++  ++|++ .+|.-+.-....+.+|++.
T Consensus       255 ----~~N~~~l~~~~~~~~pv~-~lp~~p~~~~~~~~~~~~~  291 (817)
T PLN02974        255 ----LSNEKALLSYLSNRVPVF-VLPPVPEDPGDDLDEWFDD  291 (817)
T ss_pred             ----cchHHHHHHHHhcCCcEE-eCCCCCCCcchhHHHHHHh
Confidence                24566666553  89998 5566554444557777653

>TIGR00313 cobQ cobyric acid synthase CobQ

Probab=99.94  E-value=3.9e-25  Score=195.63  Aligned_cols=207  Identities=18%  Similarity=0.161  Sum_probs=147.0

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHh-CCCcccccceeeeeecCC
Q psy14904          9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYS-NSLYEFTKLINPYLFKYP   87 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~   87 (233)
                      |+|+||.+++|||++|++|++.|+++|++|.++||+...........+.-..+...++... +. .+. ..++|+.+..+
T Consensus         1 ~~I~GT~t~vGKT~v~~~L~~~l~~~G~~v~~fKp~~~~~~s~~~~~~~e~~~a~~~qa~a~~~-~~~-~~~nPv~lk~~   78 (475)
T TIGR00313         1 IMVVGTTSSAGKSTLTAGLCRILARRGYRVAPFKSQNMSLNSFVTKEGGEIAIAQATQALAAGI-EPS-VHMNPILLKPK   78 (475)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEECCcccccCccccCCCchhHHHHHHHHHhCCC-Cch-hccCCEEeCcC
Confidence            6899999999999999999999999999999999985222110000111112344444333 43 233 56788888654


Q ss_pred             C---Chhhhhh------------hcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccC--ccCCCCchHHHHHHhCCCEE
Q psy14904         88 I---SPYTSSN------------LENRIINTSHIINCYNYLSNLTDVIILEGIGGFSV--PFHDNENSADLAEKLGLPII  150 (233)
Q Consensus        88 ~---~~~~~~~------------~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~--p~~~~~~~~~l~~~~~~~vl  150 (233)
                      .   ++.....            .++.....+.+++.+++++++||+|||||++|+..  +.....+++++++.+++|++
T Consensus        79 ~~~~s~~i~~g~~~~~~~a~~~~~~~~~~~~~~i~~~~~~l~~~~D~vIIEGaGGl~~~~~~~~d~s~~~lA~~l~apVI  158 (475)
T TIGR00313        79 GNFTSQVIVHGRAVGDMNYQEYYKNKVDFFLKAIKESLEILAREYDYVVIEGAGSPAEINLLKRDLANMRIAELANADAI  158 (475)
T ss_pred             CCCcCcEEEcCcccCcCCHHHHhhhhhHHHHHHHHHHHHHHHhcCCEEEEECCCCccccccCcCCchHHHHHHHhCCCEE
Confidence            1   2111111            01113446788899999999999999999999875  22245678999999999999


Q ss_pred             EEEcCCCCc-HHHHHHHHHHHHhC-CCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCC
Q psy14904        151 LVIDLKIGC-INNALLSLEAINSR-GLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNL  218 (233)
Q Consensus       151 lV~~~~~~~-~~~~~~~~~~l~~~-~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l  218 (233)
                      +|++.+.++ +.++..+++.++.. +.++.|+|+||++ ++....++..+.+++..|+|++|++|+++.+
T Consensus       159 LV~d~~~g~~~a~i~gt~~~l~~~~~~~i~GvIlNrv~-~~~~~~~~~~~~l~e~~gipvLG~ip~~~~l  227 (475)
T TIGR00313       159 LVADIDRGGVFASIYGTLKLLPENWRKLIKGIVINKFR-GNVDVLKSGIEKLEELTGIPVLGVLPYDENL  227 (475)
T ss_pred             EEEeCCccHHHHHHHHHHHHhChhhcCceEEEEEeccC-CcHHHHHHHHHHHHHhhCCCEEEEecCCCcC
Confidence            999988764 35666666666543 4689999999998 6543445677788888899999999998766

>PRK01077 cobyrinic acid a,c-diamide synthase; Validated

Probab=99.93  E-value=4.9e-24  Score=188.09  Aligned_cols=181  Identities=18%  Similarity=0.298  Sum_probs=136.0

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeee
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLF   84 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~   84 (233)
                      +|+.|+|+++++|+||||+|++|+.+|+++|++|.++||   |++..         |..++....|.+.   .+++++.+
T Consensus         2 ~m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~---Gpd~~---------d~~~~~~~~g~~~---~~ld~~~~   66 (451)
T PRK01077          2 RMPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKV---GPDYI---------DPAYHTAATGRPS---RNLDSWMM   66 (451)
T ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeec---CCCcc---------cHHHHHHHhCCCc---ccCCceeC
Confidence            378899999999999999999999999999999999996   55432         4455555566432   23443322


Q ss_pred             cCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCcc---CCCCchHHHHHHhCCCEEEEEcCCCCc--
Q psy14904         85 KYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPF---HDNENSADLAEKLGLPIILVIDLKIGC--  159 (233)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~---~~~~~~~~l~~~~~~~vllV~~~~~~~--  159 (233)
                                       ..+.+++.+++++++||++||||++|++++.   ....+++++|+.+++|+++|++.+..+  
T Consensus        67 -----------------~~~~v~~~~~~~~~~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~~pviLV~~~~~~~~~  129 (451)
T PRK01077         67 -----------------GEELVRALFARAAQGADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLGAPVVLVVDASGMAQS  129 (451)
T ss_pred             -----------------CHHHHHHHHHHhcccCCEEEEECCCccccCCccCCCCCCHHHHHHHhCCCEEEEECCchHHHH
Confidence                             3467899999999999999999999997643   245689999999999999999987533  


Q ss_pred             HHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCChh
Q psy14904        160 INNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNIN  221 (233)
Q Consensus       160 ~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~~  221 (233)
                      +..+......+ +.++++.|+|+|++. +.. ..+...+.+++ .++|++|+||+++.+..|
T Consensus       130 ~a~l~~~~~~~-~~~i~i~GvI~N~v~-~~~-~~~~l~~~l~~-~gipvLG~IP~~~~l~~p  187 (451)
T PRK01077        130 AAALVLGFATF-DPDVRIAGVILNRVG-SER-HYQLLREALER-CGIPVLGALPRDAALALP  187 (451)
T ss_pred             HHHHHHHHHHh-CCCCCEEEEEEECCC-Chh-HHHHHHHHHHh-cCCCEEEEeeCCcccCCC
Confidence            33344444443 447899999999997 432 22233455554 799999999999987644

>TIGR00379 cobB cobyrinic acid a,c-diamide synthase

Probab=99.92  E-value=1e-23  Score=185.78  Aligned_cols=178  Identities=22%  Similarity=0.379  Sum_probs=135.8

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeecCC
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKYP   87 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (233)
                      .|+|+++.+|+|||++|++|+++|+++|++|.++||   +++..         |..++....|.+.   .+++++.    
T Consensus         1 ~~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~---g~d~~---------D~~~~~~~~g~~~---~~ld~~~----   61 (449)
T TIGR00379         1 RVVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKV---GPDYI---------DPMFHTQATGRPS---RNLDSFF----   61 (449)
T ss_pred             CEEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEcc---CCCCC---------CHHHHHHHhCCch---hhCCccc----
Confidence            389999999999999999999999999999999996   44432         3444555566431   2333322    


Q ss_pred             CChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCccc---CccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHH
Q psy14904         88 ISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFS---VPFHDNENSADLAEKLGLPIILVIDLKIGCINNAL  164 (233)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~---~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~  164 (233)
                                   .+.+.+++.++++.+++|++||||++|+.   .|+....+++++|+.++.|+|+|++..  +++++.
T Consensus        62 -------------~~~~~i~~~~~~~~~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~--~~~~t~  126 (449)
T TIGR00379        62 -------------MSEAQIQECFHRHSKGTDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQ--RLSRSA  126 (449)
T ss_pred             -------------CCHHHHHHHHHHhcccCCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCc--hHHHHH
Confidence                         24578999999999999999999999987   455555689999999999999999987  333333


Q ss_pred             HHHH---HHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCChh
Q psy14904        165 LSLE---AINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNIN  221 (233)
Q Consensus       165 ~~~~---~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~~  221 (233)
                      .++.   ...+.++++.|+|+|++. +. ...+...+.+++..++|++|+||+++.+..|
T Consensus       127 ~al~~~~~~~~~~i~i~GvIlN~v~-~~-~~~~~~~~~i~~~~gipvLG~IP~~~~l~~p  184 (449)
T TIGR00379       127 AAIVLGYRSFDPGVKLKGVILNRVG-SE-RHLEKLKIAVEPLRGIPILGVIPRQQDLKVP  184 (449)
T ss_pred             HHHHHHHHhhCCCCCEEEEEEECCC-CH-HHHHHHHHHHHHhCCCCEEEEecCccccCCC
Confidence            3321   113468999999999998 53 2334556788888899999999999887654

This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.

>PRK11670 antiporter inner membrane protein; Provisional

Probab=99.92  E-value=5.7e-24  Score=182.65  Aligned_cols=195  Identities=12%  Similarity=0.041  Sum_probs=122.1

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcc----c-ccc
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYE----F-TKL   78 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~----~-~~~   78 (233)
                      .++++|+|+|.||||||||+|+|||.+|+++|+||+++|   .+++.... +.           .+|....    . ...
T Consensus       105 ~~~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLID---~D~qgps~-~~-----------~lg~~~~~~~~~~~~~  169 (369)
T PRK11670        105 GVKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILD---ADIYGPSI-PT-----------MLGAEDQRPTSPDGTH  169 (369)
T ss_pred             CCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEe---CCCCCCCc-ch-----------hcCCcccCCcccCCce
Confidence            357899999999999999999999999999999999999   33332110 00           0111000    0 011


Q ss_pred             eeeeeecC--CCChhhhhhhcC----C-CCCHHHHHHHHH-HhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEE
Q psy14904         79 INPYLFKY--PISPYTSSNLEN----R-IINTSHIINCYN-YLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPII  150 (233)
Q Consensus        79 ~~~~~~~~--~~~~~~~~~~~~----~-~~~~~~l~~~~~-~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vl  150 (233)
                      +.|.....  ..+.......+.    + ......+.+.+. .+.++|||||||||||+...   .++.+.++.  .+.++
T Consensus       170 i~p~~~~g~~~~~~~~l~~~~~~~i~~g~~~~~~l~~~l~~~~~~~yDyvIID~PPg~gd~---~l~~~~l~a--ad~vi  244 (369)
T PRK11670        170 MAPIMAHGLATNSIGYLVTDDNAMVWRGPMASKALMQMLQETLWPDLDYLVLDMPPGTGDI---QLTLAQNIP--VTGAV  244 (369)
T ss_pred             eeeeeccCcccccHHHhcCcCcceeecCcchHHHHHHHHHHHhhccCCEEEEeCCCCCchH---HHHHhhhcc--CCeEE
Confidence            22211110  000000000000    1 112345666663 56678999999999986421   111222221  13578


Q ss_pred             EEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchh---h-----hhhhHHHHHhhcCCCceEecCCCCCCC
Q psy14904        151 LVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTL---F-----ANENYIELTKYLNVTPLGRIPYLYNLN  219 (233)
Q Consensus       151 lV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~---~-----~~~~~~~l~~~~~~pvlg~IP~~~~l~  219 (233)
                      +|+.++..++.++...++.+++.+++++|+|.|++. .+..   .     .....+.+++.++.++++.||.+..+.
T Consensus       245 iV~tp~~~s~~da~~~i~~~~~~~~~ilGiV~Nm~~-~~~~~~~~~~~if~~~~~~~lae~~~~~ll~~IP~~~~I~  320 (369)
T PRK11670        245 VVTTPQDIALIDAKKGIVMFEKVEVPVLGIVENMSM-HICSNCGHHEPIFGTGGAEKLAEKYHTQLLGQMPLHISLR  320 (369)
T ss_pred             EEecCchhHHHHHHHHHHHHhccCCCeEEEEEcCCc-cccCCccchhhhcccchHHHHHHHcCCcEEEEeCCChHHH
Confidence            888888878888888888888899999999999986 2211   1     112467788889999999999998755

>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]

Probab=99.92  E-value=9e-24  Score=179.13  Aligned_cols=180  Identities=19%  Similarity=0.293  Sum_probs=140.9

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeecC
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKY   86 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~   86 (233)
                      +.|.|+++.+|+||||+|++|+++|+++|++|--||   .|||+.|  |++       +..++|.+.   .|+++|... 
T Consensus         1 ~~vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfK---vGPDYID--P~~-------H~~atG~~s---rNLD~~mm~-   64 (451)
T COG1797           1 PAVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFK---VGPDYID--PGY-------HTAATGRPS---RNLDSWMMG-   64 (451)
T ss_pred             CceEEecCCCCCcHHHHHHHHHHHHHhcCCcccccc---cCCCccC--chh-------hhHhhCCcc---CCCchhhcC-
Confidence            358999999999999999999999999999999999   8999887  553       455566432   466666532 


Q ss_pred             CCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccC---CCCchHHHHHHhCCCEEEEEcCCCCcHH--
Q psy14904         87 PISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFH---DNENSADLAEKLGLPIILVIDLKIGCIN--  161 (233)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~---~~~~~~~l~~~~~~~vllV~~~~~~~~~--  161 (233)
                                      .+.+++.+.+-.++.|+.||||..|++++..   +..+.+++|+.+++|||+|++....+-+  
T Consensus        65 ----------------~~~v~~~f~~~~~~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~~PVvLVid~~~~s~S~A  128 (451)
T COG1797          65 ----------------EEGVRALFARAAADADIAVIEGVMGLFDGRGSATDTGSTADLAKLLGAPVVLVVDASGLSRSVA  128 (451)
T ss_pred             ----------------HHHHHHHHHHhcCCCCEEEEeeccccccCCCCCcCCCCHHHHHHHhCCCEEEEEeCcchhHHHH
Confidence                            3568889999899999999999999987632   3468999999999999999998743222  


Q ss_pred             HHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCChh
Q psy14904        162 NALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNIN  221 (233)
Q Consensus       162 ~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~~  221 (233)
                      .+....+. -+.++++.|||+||+. +. ...+-..+.+++..++||+|+||+++++..|
T Consensus       129 Aiv~G~~~-fdp~v~iaGVIlNrVg-se-rH~~llr~Ale~~~gv~vlG~lpr~~~l~lp  185 (451)
T COG1797         129 AIVKGFKH-FDPDVNIAGVILNRVG-SE-RHYELLRDALEEYTGVPVLGYLPRDDDLELP  185 (451)
T ss_pred             HHHHHHHh-cCCCCceEEEEEecCC-CH-HHHHHHHHHhhhcCCCcEEEEecCCcccCCc
Confidence            22222222 1578999999999998 42 2334455688888899999999999988877

>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]

Probab=99.92  E-value=1.4e-24  Score=168.37  Aligned_cols=188  Identities=15%  Similarity=0.162  Sum_probs=122.6

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHH-------------------H
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNL-------------------L   65 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~-------------------~   65 (233)
                      |.++|.|||.||||||||+++||+.+||++|+||+++|   .+.       ||++-|.-.                   +
T Consensus         1 M~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD---~Di-------GLRNLDlimGlE~RiVYd~vdVi~g~~~l   70 (272)
T COG2894           1 MARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLID---FDI-------GLRNLDLIMGLENRIVYDLVDVIEGEATL   70 (272)
T ss_pred             CceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEe---cCc-------CchhhhhhhcccceeeeeehhhhcCccch
Confidence            46899999999999999999999999999999999998   322       222212110                   0


Q ss_pred             HHHhCCCcccccceeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhh-cCCCeEEEeccCcccCccCCCCchHHHHHH
Q psy14904         66 NKYSNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLS-NLTDVIILEGIGGFSVPFHDNENSADLAEK  144 (233)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~D~vlID~~~g~~~p~~~~~~~~~l~~~  144 (233)
                      .+++ +.+..-+++  +.+  |.+    ..+....+..+.+...+++|+ .+|||||||||+|+-.+.       ..|..
T Consensus        71 ~QAL-IkDKr~~nL--~lL--PAs----QtrdKdalt~E~v~~vv~eL~~~~fDyIi~DsPAGIE~G~-------~~A~~  134 (272)
T COG2894          71 NQAL-IKDKRLENL--FLL--PAS----QTRDKDALTPEGVKKVVNELKAMDFDYIIIDSPAGIEQGF-------KNAVY  134 (272)
T ss_pred             hhHh-hccccCCce--Eec--ccc----cccCcccCCHHHHHHHHHHHHhcCCCEEEecCcchHHHHH-------Hhhhh
Confidence            1110 000000111  111  111    112223467788888899888 799999999999875432       23333


Q ss_pred             hCCCEEEEEcCCCCcHHHHHHHHHHHHhCC----C---cEEEEEEcccCCCchhhhhhh--HHHHHhhcCCCceEecCCC
Q psy14904        145 LGLPIILVIDLKIGCINNALLSLEAINSRG----L---KLIGWVANHTQIVDTLFANEN--YIELTKYLNVTPLGRIPYL  215 (233)
Q Consensus       145 ~~~~vllV~~~~~~~~~~~~~~~~~l~~~~----~---~i~GiVlN~~~~~~~~~~~~~--~~~l~~~~~~pvlg~IP~~  215 (233)
                      .....++|+.++..++.++-..+-.+...+    .   .-..+++||++ |......++  .+.+.+.+.+|++|.||++
T Consensus       135 ~Ad~AiVVtnPEvSsVRDsDRiiGlLesk~~rae~~~~~~~~llvnR~~-p~~v~~GeMlsv~Dv~~iL~i~liGiiPed  213 (272)
T COG2894         135 FADEAIVVTNPEVSSVRDSDRIIGLLESKSRRAEIGEEPKEHLLLNRYR-PEMVKRGEMLSVEDVLEILSIPLIGVIPED  213 (272)
T ss_pred             ccceEEEEcCCCccccccchhheeehhcccchhhcCCcccceEEEEccC-HHHhccCCcccHHHHHHHhCCceEEeecCc
Confidence            334789999999887776655554443221    1   12568999999 654333333  4677778999999999999


Q ss_pred             CCCC
Q psy14904        216 YNLN  219 (233)
Q Consensus       216 ~~l~  219 (233)
                      +.+-
T Consensus       214 ~~Vi  217 (272)
T COG2894         214 QDVL  217 (272)
T ss_pred             hhhh
Confidence            8765

>TIGR01969 minD_arch cell division ATPase MinD, archaeal

Probab=99.91  E-value=1.6e-23  Score=171.62  Aligned_cols=194  Identities=19%  Similarity=0.221  Sum_probs=122.8

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCC--CCCCccchHHHHHHHHhCCCccccccee----
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNN--KNKIWFNEDVNLLNKYSNSLYEFTKLIN----   80 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~--~~~~l~~~d~~~~~~~~~~~~~~~~~~~----   80 (233)
                      ++|+|+|.||||||||+|+|||.+|+++|+||+++|   .+++...  ..-+....+..+.....+. ....+.+.    
T Consensus         1 ~ii~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD---~D~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~   76 (251)
T TIGR01969         1 RIITIASGKGGTGKTTITANLGVALAKLGKKVLALD---ADITMANLELILGMEDKPVTLHDVLAGE-ADIKDAIYEGPF   76 (251)
T ss_pred             CEEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEe---CCCCCccceeEeCCCCCCCCHHHHhcCC-CCHHHheEeCCC
Confidence            489999999999999999999999999999999998   3332110  0011111111111111111 11100000    


Q ss_pred             -eeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCc
Q psy14904         81 -PYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGC  159 (233)
Q Consensus        81 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~  159 (233)
                       ...+  |.......   ......+.+.+.++.++++||+|||||||++..     .....+.  ....+++|+.++..+
T Consensus        77 ~l~~l--p~~~~~~~---~~~~~~~~l~~~l~~l~~~yD~VIiD~p~~~~~-----~~~~~l~--~ad~vliv~~~~~~s  144 (251)
T TIGR01969        77 GVKVI--PAGVSLEG---LRKADPDKLEDVLKEIIDDTDFLLIDAPAGLER-----DAVTALA--AADELLLVVNPEISS  144 (251)
T ss_pred             CEEEE--eCCCCHHH---HhhcCHHHHHHHHHHHHhhCCEEEEeCCCccCH-----HHHHHHH--hCCeEEEEECCCCch
Confidence             0011  11111110   011245678888988989999999999988742     1122222  224699999999888


Q ss_pred             HHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCC
Q psy14904        160 INNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLN  219 (233)
Q Consensus       160 ~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~  219 (233)
                      +.++....+..++.+.++.|+|+|+++ ++..  ....+.+++.++.|+++.||+++.+.
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~vv~N~~~-~~~~--~~~~~~l~~~~~~~~l~~Ip~~~~~~  201 (251)
T TIGR01969       145 ITDALKTKIVAEKLGTAILGVVLNRVT-RDKT--ELGREEIETILEVPVLGVVPEDPEVR  201 (251)
T ss_pred             HHHHHHHHHHHHhcCCceEEEEEECCC-chhh--hhHHHHHHHhhCCcEEEEecCCHhHH
Confidence            887777777777778889999999998 4321  22345677778999999999998764

This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.

>PRK05632 phosphate acetyltransferase; Reviewed

Probab=99.91  E-value=4.8e-23  Score=189.79  Aligned_cols=191  Identities=19%  Similarity=0.212  Sum_probs=138.1

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeee
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLF   84 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~   84 (233)
                      |||.|+|+++.+|+|||++|++|+.+|.++|++|.+|||+++++..        ...+   .....  .   ..      
T Consensus         1 m~k~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~~~p~~--------~~~~---~~~~~--~---~~------   58 (684)
T PRK05632          1 MSRSIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIAQPPLT--------MSEV---EALLA--S---GQ------   58 (684)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCcccCCCC--------HHHH---HHHHh--c---cC------
Confidence            4678999999999999999999999999999999999998876321        0111   11100  0   00      


Q ss_pred             cCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHH---
Q psy14904         85 KYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCIN---  161 (233)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~---  161 (233)
                                    .....+++.+.++++.++||+|||||+++.........+++++|+.+++|+++|++.+.+++.   
T Consensus        59 --------------~~~~~~~I~~~~~~l~~~~D~VLIEGa~~~~~~~~~~~~na~iA~~L~~pVILV~~~~~~si~d~~  124 (684)
T PRK05632         59 --------------LDELLEEIVARYHALAKDCDVVLVEGLDPTRKHPFEFSLNAEIAKNLGAEVVLVSSGGNDTPEELA  124 (684)
T ss_pred             --------------ChHHHHHHHHHHHHhccCCCEEEEeCcCCCCcCcccCchHHHHHHHhCCCEEEEECCCCCChHHHH
Confidence                          012346788889899999999999999765543333457899999999999999999987754   


Q ss_pred             -HHHHHHHHHH-hCCCcEEEEEEcccCCCchhhhhhhHHHH-----------------HhhcCCCceEecCCCCCCChh-
Q psy14904        162 -NALLSLEAIN-SRGLKLIGWVANHTQIVDTLFANENYIEL-----------------TKYLNVTPLGRIPYLYNLNIN-  221 (233)
Q Consensus       162 -~~~~~~~~l~-~~~~~i~GiVlN~~~~~~~~~~~~~~~~l-----------------~~~~~~pvlg~IP~~~~l~~~-  221 (233)
                       ++....+.+. ..+.++.|+|+|+++.+.. ..+.....+                 .+..++|++|+||+++.+.++ 
T Consensus       125 ~~i~~~~~~l~~~~~~~v~GVIvNr~~v~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~LG~IP~d~~L~~~t  203 (684)
T PRK05632        125 ERIELAASSFGGAKNANILGVIINKLNAPVD-EQGRTRPDLSEIFDDSSKANVDPSKLFASSPLPLLGVVPWSPDLIAPR  203 (684)
T ss_pred             HHHHHHHHHhccCCCCcEEEEEEECCCCCHH-HHHHHHHHHHhhhccccccchhcchhhhcCCCceEEEccCccccCCCC
Confidence             4555555655 6789999999999431111 222333333                 123589999999999999988 


Q ss_pred             --hhhhhcCCCCC
Q psy14904        222 --LISHYLDFSSL  232 (233)
Q Consensus       222 --~~~~~~~~~~~  232 (233)
                        ++++.|+.+.+
T Consensus       204 ~~~i~~~L~~~vl  216 (684)
T PRK05632        204 VIDIAKHLGATVL  216 (684)
T ss_pred             HHHHHHHcCCEEE
Confidence              46777777653

>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily

Probab=99.91  E-value=6.3e-23  Score=158.63  Aligned_cols=159  Identities=14%  Similarity=0.175  Sum_probs=113.7

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeecCC
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKYP   87 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (233)
                      +|+|+|+|||+||||+|.|||.+++++|+||+++|   .+++...         ..++                  +..+
T Consensus         1 vi~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD---~D~q~~~---------~~~~------------------~~~~   50 (169)
T cd02037           1 VIAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLD---ADIYGPS---------IPKM------------------WRGP   50 (169)
T ss_pred             CEEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEe---CCCCCCC---------chHH------------------HhCc
Confidence            58999999999999999999999999999999999   4443211         0000                  0000


Q ss_pred             CChhhhhhhcCCCCCHHHHHHHHHHhh-cCCCeEEEeccCcccCccCCCCchHHHHH-HhCCCEEEEEcCCCCcHHHHHH
Q psy14904         88 ISPYTSSNLENRIINTSHIINCYNYLS-NLTDVIILEGIGGFSVPFHDNENSADLAE-KLGLPIILVIDLKIGCINNALL  165 (233)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~D~vlID~~~g~~~p~~~~~~~~~l~~-~~~~~vllV~~~~~~~~~~~~~  165 (233)
                                   .....+.+.++++. ++||+|||||||++..      ....... .....+++|+.++..++.++..
T Consensus        51 -------------~~~~~l~~~~~~~~~~~yD~VIiD~pp~~~~------~~~~~~~~~~ad~viiV~~p~~~s~~~~~~  111 (169)
T cd02037          51 -------------MKMGAIKQFLTDVDWGELDYLVIDMPPGTGD------EHLTLAQSLPIDGAVIVTTPQEVALDDVRK  111 (169)
T ss_pred             -------------chHHHHHHHHHHhhcCCCCEEEEeCCCCCcH------HHHHHHhccCCCeEEEEECCchhhHHHHHH
Confidence                         01123455555554 7899999999987532      0111111 2234789999999889999999


Q ss_pred             HHHHHHhCCCcEEEEEEcccCCCc----hh---h-hhhhHHHHHhhcCCCceEecCCCC
Q psy14904        166 SLEAINSRGLKLIGWVANHTQIVD----TL---F-ANENYIELTKYLNVTPLGRIPYLY  216 (233)
Q Consensus       166 ~~~~l~~~~~~i~GiVlN~~~~~~----~~---~-~~~~~~~l~~~~~~pvlg~IP~~~  216 (233)
                      .++.+++.+.++.|+|+||+. +.    ..   . .....+.+.+.++.|++|.||+++
T Consensus       112 ~~~~l~~~~~~~~gvv~N~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~  169 (169)
T cd02037         112 AIDMFKKVNIPILGVVENMSY-FVCPHCGKKIYIFGKGGGEKLAEELGVPLLGKIPLDP  169 (169)
T ss_pred             HHHHHHhcCCCeEEEEEcCCc-ccCCCCCCcccccCCccHHHHHHHcCCCEEEeccCCC
Confidence            999999999999999999997 31    11   1 123557777788999999999975

Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.

>CHL00175 minD septum-site determining protein; Validated

Probab=99.91  E-value=1.3e-23  Score=175.11  Aligned_cols=201  Identities=17%  Similarity=0.123  Sum_probs=125.3

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCC--CCCCccchHHHHHHHHhCCCcccccce-e
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNN--KNKIWFNEDVNLLNKYSNSLYEFTKLI-N   80 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~--~~~~l~~~d~~~~~~~~~~~~~~~~~~-~   80 (233)
                      ++.++|+|+|.||||||||+|.|||.+|+++|+||+++|   .+++..+  ...++.+....-+.........+.+.+ .
T Consensus        13 ~~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD---~D~~~~~l~~~lg~~~~~~~~~~d~l~~~~~l~~~~~~   89 (281)
T CHL00175         13 TMSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALID---ADIGLRNLDLLLGLENRVLYTAMDVLEGECRLDQALIR   89 (281)
T ss_pred             CCceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEe---CCCCCCChhhhcCCCCCCCCCHHHHHcCCCChhhheee
Confidence            367899999999999999999999999999999999998   3332111  001111000000011110000000000 0


Q ss_pred             ----eeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhc-CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcC
Q psy14904         81 ----PYLFKYPISPYTSSNLENRIINTSHIINCYNYLSN-LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDL  155 (233)
Q Consensus        81 ----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~  155 (233)
                          +...-.|.+..    ........+.+.+.++.+.+ .||||||||||++...      ....... ...+++|+++
T Consensus        90 ~~~~~~l~~l~~~~~----~~~~~~~~~~l~~~l~~l~~~~yD~VIiDtpp~~~~~------~~~~l~~-aD~viiV~~p  158 (281)
T CHL00175         90 DKRWKNLSLLAISKN----RQRYNVTRKNMNMLVDSLKNRGYDYILIDCPAGIDVG------FINAIAP-AQEAIVVTTP  158 (281)
T ss_pred             cCCCCCeEEEeCCCc----hhhccCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCHH------HHHHHHh-cCeeEEEcCC
Confidence                00000111111    11112345568888888887 9999999999886421      1122222 2478999999


Q ss_pred             CCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhh--hhHHHHHhhcCCCceEecCCCCCCC
Q psy14904        156 KIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFAN--ENYIELTKYLNVTPLGRIPYLYNLN  219 (233)
Q Consensus       156 ~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~--~~~~~l~~~~~~pvlg~IP~~~~l~  219 (233)
                      +..++.++...++.+++.+....++|+|+++ ++.....  ...+.+++.++.++++.||+++.+.
T Consensus       159 ~~~si~~~~~~~~~l~~~~~~~~~lvvN~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~Ip~d~~v~  223 (281)
T CHL00175        159 EITAIRDADRVAGLLEANGIYNVKLLVNRVR-PDMIQANDMMSVRDVQEMLGIPLLGAIPEDENVI  223 (281)
T ss_pred             ChHHHHHHHHHHHHHHHcCCCceEEEEeccC-hhhhhhhccccHHHHHHHhCCCeEEEccCCHhHH
Confidence            9988888888888888777777899999998 5321111  1346678888999999999998665

>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms

Probab=99.90  E-value=2.4e-22  Score=149.46  Aligned_cols=132  Identities=34%  Similarity=0.571  Sum_probs=115.8

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeecCCC
Q psy14904          9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKYPI   88 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (233)
                      +++++  .|+|||+++.+|+..|+++|++|.++||..                               .           
T Consensus         3 ~~~~~--~~~Gkt~~~~~l~~~l~~~~~~v~~~kp~~-------------------------------~-----------   38 (134)
T cd03109           3 GFGTG--TDIGKTVATAILARALKEKGYRVAPLKPVQ-------------------------------T-----------   38 (134)
T ss_pred             EEeCC--CCcCHHHHHHHHHHHHHHCCCeEEEEecCC-------------------------------C-----------
Confidence            45555  469999999999999999999999998320                               0           


Q ss_pred             ChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHH
Q psy14904         89 SPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLE  168 (233)
Q Consensus        89 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~  168 (233)
                                                  +|+++|||++|+.+|+....+.+|+++.++.|+++|++++.++++++..+++
T Consensus        39 ----------------------------~d~vliEGaGg~~~p~~~~~~~~d~~~~~~~~vllV~~~~~g~i~~a~~~~~   90 (134)
T cd03109          39 ----------------------------YDFVLVEGAGGLCVPLKEDFTNADVAKELNLPAILVTSAGLGSINHAFLTIE   90 (134)
T ss_pred             ----------------------------CCEEEEECCCccccCCCCCCCHHHHHHHhCCCEEEEEcCCCCcHhHHHHHHH
Confidence                                        7999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecC
Q psy14904        169 AINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIP  213 (233)
Q Consensus       169 ~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP  213 (233)
                      .++..++.+.|+|.|++. +.........+.+++..++|++|.||
T Consensus        91 ~l~~~g~~i~gvi~N~~~-~~~~~~~~~~~~i~~~~gip~LG~IP  134 (134)
T cd03109          91 AARIKGIILNGVLGNVIV-EKEGLATLNVETIERLTGIPVLGIVP  134 (134)
T ss_pred             HHHhcCCceeEEEEccCC-CccchhhhhHHHHHHhcCCCEEEeCC
Confidence            999999999999999998 54333335677888889999999998

The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.

>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional

Probab=99.90  E-value=8.5e-22  Score=171.26  Aligned_cols=175  Identities=24%  Similarity=0.386  Sum_probs=132.2

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeec
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFK   85 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~   85 (233)
                      |+.|+|+++.+|+||||++++|+.+|.++|++|..+|   .|++..         |..++..+.|.+.   .+++|+.. 
T Consensus         1 m~~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~K---~Gpd~i---------D~~~~~~~~g~~~---~nld~~~~-   64 (433)
T PRK13896          1 MKGFVLGGTSSGVGKTVATLATIRALEDAGYAVQPAK---AGPDFI---------DPSHHEAVAGRPS---RTLDPWLS-   64 (433)
T ss_pred             CceEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEEe---eCCCCC---------CHHHHHHHhCCCc---ccCChhhC-
Confidence            5679999999999999999999999999999999999   577754         4456677777542   34444422 


Q ss_pred             CCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCc--HHHH
Q psy14904         86 YPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGC--INNA  163 (233)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~--~~~~  163 (233)
                                      ..+.+++.+.+  ..+|++||||.+|+.++  ...+.+|+++.++.|+|+|++...++  +..+
T Consensus        65 ----------------~~~~i~~~~~~--~~~d~~vIEG~gGl~dg--~~~s~adla~~l~~PviLVv~~~~g~~s~aa~  124 (433)
T PRK13896         65 ----------------GEDGMRRNYYR--GEGDICVVEGVMGLYDG--DVSSTAMVAEALDLPVVLVVDAKAGMESVAAT  124 (433)
T ss_pred             ----------------CHHHHHHHHHh--hcCCEEEEECCCccccC--CCCCHHHHHHHHCCCEEEEEcCcccHHHHHHH
Confidence                            12446665543  35999999999999864  33689999999999999999999985  4445


Q ss_pred             HHHHHHHH---hCCCcEEEEEEcccCCCchhhhhhh-HHHHHhhcCCCceEecCCCCCCChh
Q psy14904        164 LLSLEAIN---SRGLKLIGWVANHTQIVDTLFANEN-YIELTKYLNVTPLGRIPYLYNLNIN  221 (233)
Q Consensus       164 ~~~~~~l~---~~~~~i~GiVlN~~~~~~~~~~~~~-~~~l~~~~~~pvlg~IP~~~~l~~~  221 (233)
                      +.....+.   ..++++.|||+|++. +.  .+.+. .+.+++  ++|++|.||+++.+..|
T Consensus       125 l~g~~~~~~~~~~~~~i~GvIlN~~~-~~--~h~~~l~~~~~~--~i~vlG~lP~~~~~~~~  181 (433)
T PRK13896        125 ALGFRAYADRIGRDIDVAGVIAQRAH-GG--RHADGIRDALPD--ELTYFGRIPPRDDLEIP  181 (433)
T ss_pred             HHHHHHHHHhccCCCcEEEEEEECCC-cH--HHHHHHHHhhhh--cCceeEecccCCCCCCC
Confidence            66654333   258999999999998 42  23333 344444  79999999999988765

>PRK06278 cobyrinic acid a,c-diamide synthase; Validated

Probab=99.89  E-value=1.2e-21  Score=172.11  Aligned_cols=174  Identities=18%  Similarity=0.273  Sum_probs=127.9

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeee
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLF   84 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~   84 (233)
                      +|+.|+|+++.+|+||||+|++|+.+|+++   |..+|   .|++..|         .      .         -..+.+
T Consensus       237 ~~~~i~Iagt~Tg~GKT~vt~~L~~al~~~---v~~fK---~GpD~id---------~------~---------p~~~~~  286 (476)
T PRK06278        237 KPKGIILLATGSESGKTFLTTSIAGKLRGK---VFVAK---IGPDVRD---------I------V---------PSLYLL  286 (476)
T ss_pred             CCCeEEEEeCCCCCCHHHHHHHHHHHHHhC---eEEEc---CCCChhh---------c------C---------Ccceec
Confidence            477899999999999999999999999986   88899   4554321         0      0         012445


Q ss_pred             cCCCChhhhhhhcCCC-CCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCC---CchHHHHHHhCCCEEEEEcCCCCcH
Q psy14904         85 KYPISPYTSSNLENRI-INTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDN---ENSADLAEKLGLPIILVIDLKIGCI  160 (233)
Q Consensus        85 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~---~~~~~l~~~~~~~vllV~~~~~~~~  160 (233)
                      ..+.+|+.++.++... ...+...+.++.  .++|++||||++|+++|....   .+.+++|+.+++|+++|++...+++
T Consensus       287 ~~~~sp~~a~n~~~d~~~~~~~~~~~~~~--~~~DivIIEGagGL~dg~~~~~~~~S~adlAk~l~~PVILV~~~~~g~i  364 (476)
T PRK06278        287 REKMTKYNSIKIGDRGWSDVEEFLEFVKN--SDYDYYIIEGVMGAFTGALNKKNPYSGAEIAKALGFPVYIVSSCSKSGI  364 (476)
T ss_pred             ccccCChHHHhhcCCcccCHHHHHHHHHh--cCCCEEEEECCCCcccccCCCCccccHHHHHHHhCCCEEEEEcCCCChH
Confidence            6677777776543332 333333333332  368999999999999985432   5889999999999999999999987


Q ss_pred             HHHHHH----HHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecC
Q psy14904        161 NNALLS----LEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIP  213 (233)
Q Consensus       161 ~~~~~~----~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP  213 (233)
                      +++...    .+.+++.++++.|+|+|++. +.  .+.+..+.+.+..|+|++|++|
T Consensus       365 ~~~~~~i~G~~~~l~~~~i~i~GVIlN~v~-~~--~~~~~~~~~le~~gvpVLG~~~  418 (476)
T PRK06278        365 EGAFVESMAYYSLLKKMGVKVEGIILNKVY-NM--EIFEKVKKIAENSNINLIGVGK  418 (476)
T ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEEECCC-cH--HHHHHHHHHHHhcCCCEEEecc
Confidence            776554    35666789999999999998 42  2445555444558999999944

>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase

Probab=99.89  E-value=3.6e-22  Score=159.89  Aligned_cols=198  Identities=14%  Similarity=0.110  Sum_probs=107.6

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCC--CCCCcc-chHH-HHHHHHhC-CCcccccceee
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNN--KNKIWF-NEDV-NLLNKYSN-SLYEFTKLINP   81 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~--~~~~l~-~~d~-~~~~~~~~-~~~~~~~~~~~   81 (233)
                      ++|+|+| ||||||||+|.|||.+|+++|+||+++|   .+++...  ...+.. .... ..+..... ......+.+..
T Consensus         1 ~~iav~g-KGGvGKTt~~~nLA~~la~~G~rvLliD---~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (212)
T cd02117           1 RQIAIYG-KGGIGKSTTSQNLSAALAEMGKKVLQVG---CDPKADSTRLLLGGKAPTTILELAAEDGHVEDLELEDVIFE   76 (212)
T ss_pred             CEEEEEC-CCcCcHHHHHHHHHHHHHHCCCcEEEEe---CCCCCCccccccCCCCCCCHHHHHhhhCCcCCcChhHeeEe
Confidence            4699997 9999999999999999999999999998   3333210  000000 0011 11110000 00000000100


Q ss_pred             e---eecCCCChhhhh-hhcCCC-CCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCC
Q psy14904         82 Y---LFKYPISPYTSS-NLENRI-INTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLK  156 (233)
Q Consensus        82 ~---~~~~~~~~~~~~-~~~~~~-~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~  156 (233)
                      .   ..-.|.+..... ...... .....+.+.++.+.++||||||||++.+...   .+ ...++......+++|++++
T Consensus        77 ~~~~l~vlp~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~yD~ilID~~g~~~~~---~~-~~~l~~~~ad~vliv~~p~  152 (212)
T cd02117          77 GFGGVKCVESGGPEPGVGCAGRGVITAVNLLEKEGFAEDDLDVVLYDVLGDVVCG---GF-AMPIREGKADEIYIVTSGE  152 (212)
T ss_pred             CCCCcEEEeCCCCCCCcccCCcchhhHHHHHHhccccccCCCEEEEecCCCceec---cc-ccccccccCcEEEEEeccc
Confidence            0   000011111100 000000 0111223356667789999999997654210   11 0111111123688888888


Q ss_pred             CCcHHHH---HHHHHHHHhC-CCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCC
Q psy14904        157 IGCINNA---LLSLEAINSR-GLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYL  215 (233)
Q Consensus       157 ~~~~~~~---~~~~~~l~~~-~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~  215 (233)
                      ..++..+   ...++.+++. +.++.|+|+||++ ++  .+.+..+.+++.++.++++.||++
T Consensus       153 ~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~-~~--~~~~~~~~~~~~~~~~vl~~IP~d  212 (212)
T cd02117         153 FMALYAANNICKGIRKYAKSGGVRLGGLICNSRN-TD--RETELIDAFAERLGTQVIHFVPRD  212 (212)
T ss_pred             HHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCC-Cc--cHHHHHHHHHHHcCCCEEEecCCC
Confidence            7665444   4444444433 7788999999998 54  344567788888899999999985

Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.

>TIGR01968 minD_bact septum site-determining protein MinD

Probab=99.88  E-value=2.1e-22  Score=165.79  Aligned_cols=193  Identities=15%  Similarity=0.173  Sum_probs=121.6

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccC--CCCCCccch-HHHHHHHHhCCCcccc-------
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLN--NKNKIWFNE-DVNLLNKYSNSLYEFT-------   76 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~--~~~~~l~~~-d~~~~~~~~~~~~~~~-------   76 (233)
                      |+|+|+|+||||||||+|.|||.+|+++|+||+++|   .+++..  +...++... ...+.....+. ....       
T Consensus         2 ~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD---~D~~~~~~~~~lg~~~~~~~~~~~~~~~~-~~~~~~i~~~~   77 (261)
T TIGR01968         2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVVLID---ADIGLRNLDLLLGLENRIVYTLVDVVEGE-CRLQQALIKDK   77 (261)
T ss_pred             eEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEEE---CCCCCCCeeEEeCCCCcCCCCHHHHhcCc-CcHHHHhhcCC
Confidence            689999999999999999999999999999999998   333210  000011100 00001111110 0000       


Q ss_pred             --cceeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEc
Q psy14904         77 --KLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVID  154 (233)
Q Consensus        77 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~  154 (233)
                        +++.  .+.  .+...    .......+.+.+.++.+++.||+|||||||++..+.     .. .... .+.+++|+.
T Consensus        78 ~~~~l~--~l~--~~~~~----~~~~~~~~~l~~~l~~l~~~~D~viiD~p~~~~~~~-----~~-~l~~-aD~viiv~~  142 (261)
T TIGR01968        78 RLKNLY--LLP--ASQTR----DKDAVTPEQMKKLVNELKEEFDYVIIDCPAGIESGF-----RN-AVAP-ADEAIVVTT  142 (261)
T ss_pred             CCCCeE--EEe--CCCch----hhhhCCHHHHHHHHHHHHHhCCEEEEeCCCCcCHHH-----HH-HHHh-CCeEEEEcC
Confidence              1111  111  11100    111234567888889899999999999998875321     11 1222 236899999


Q ss_pred             CCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhh--hhhHHHHHhhcCCCceEecCCCCCCC
Q psy14904        155 LKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFA--NENYIELTKYLNVTPLGRIPYLYNLN  219 (233)
Q Consensus       155 ~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~--~~~~~~l~~~~~~pvlg~IP~~~~l~  219 (233)
                      ++..++..+...++.+++.+....++|+|+++ +.....  ....+.+++.++.|+++.||++..+.
T Consensus       143 ~~~~s~~~~~~~~~~l~~~~~~~~~iviN~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Ip~~~~~~  208 (261)
T TIGR01968       143 PEVSAVRDADRVIGLLEAKGIEKIHLIVNRLR-PEMVKKGDMLSVDDVLEILSIPLIGVIPEDEAII  208 (261)
T ss_pred             CCcHHHHHHHHHHHHHHHcCCCceEEEEeCcC-chhcccccccCHHHHHHHhCCceeEEccCCHHHH
Confidence            99888888888888877666656899999997 532111  12356677778999999999988653

This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=99.88  E-value=7.5e-22  Score=153.54  Aligned_cols=157  Identities=17%  Similarity=0.179  Sum_probs=109.6

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeecCC
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKYP   87 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (233)
                      +|+|+|+|||+||||+|.|||.+|+++|++|+++|   .+++..    .+   +     ..++...     ..+..    
T Consensus         1 ~i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD---~D~~~~----~~---~-----~~~~~~~-----~~~~~----   56 (179)
T cd02036           1 VIVVTSGKGGVGKTTTTANLGTALAQLGYKVVLID---ADLGLR----NL---D-----LILGLEN-----RVVYT----   56 (179)
T ss_pred             CEEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEe---CCCCCC----Cc---h-----hhccccc-----cCCcc----
Confidence            58999999999999999999999999999999998   444321    10   0     0111110     00000    


Q ss_pred             CChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHH
Q psy14904         88 ISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSL  167 (233)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~  167 (233)
                                        +.+.+.    + |+|||||||++...      ...... ....+++|+.++..++..+...+
T Consensus        57 ------------------~~~~~~----~-d~viiD~p~~~~~~------~~~~l~-~ad~viiv~~~~~~s~~~~~~~~  106 (179)
T cd02036          57 ------------------LHDVLA----G-DYILIDSPAGIERG------FITAIA-PADEALLVTTPEISSLRDADRVK  106 (179)
T ss_pred             ------------------hhhccc----C-CEEEEECCCCCcHH------HHHHHH-hCCcEEEEeCCCcchHHHHHHHH
Confidence                              011111    1 99999999876421      111222 23478999999988888888888


Q ss_pred             HHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCC
Q psy14904        168 EAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLN  219 (233)
Q Consensus       168 ~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~  219 (233)
                      +.++..+.+..|+|+|+++ ++.....+..+.+++.++.++++.||+++.+.
T Consensus       107 ~~~~~~~~~~~~iv~N~~~-~~~~~~~~~~~~~~~~~~~~v~~~Ip~~~~~~  157 (179)
T cd02036         107 GLLEALGIKVVGVIVNRVR-PDMVEGGDMVEDIEEILGVPLLGVIPEDPAVI  157 (179)
T ss_pred             HHHHHcCCceEEEEEeCCc-ccccchhhHHHHHHHHhCCCEEEEecCCHHHH
Confidence            8888778889999999998 65444444567788888999999999998664

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>PRK13232 nifH nitrogenase reductase; Reviewed

Probab=99.88  E-value=5.5e-22  Score=164.72  Aligned_cols=203  Identities=13%  Similarity=0.077  Sum_probs=114.9

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCC--CCCCc-cchH-HHHHHHHhCCCcccccceee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNN--KNKIW-FNED-VNLLNKYSNSLYEFTKLINP   81 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~--~~~~l-~~~d-~~~~~~~~~~~~~~~~~~~~   81 (233)
                      ||+|+|+ +||||||||+++|||.+|+++|+||+++|   .+++...  ...+. .... .+.+........+..+.+.+
T Consensus         1 ~~~iav~-gKGGVGKTT~a~nLA~~La~~G~rVllvD---~Dpq~~~~~~l~g~~~~~~~~d~l~~~~~~~~~~~~~i~~   76 (273)
T PRK13232          1 MRQIAIY-GKGGIGKSTTTQNLTAALSTMGNKILLVG---CDPKADSTRMLLGGLNQKTVLDTLRSEGDEGVDLDVVMQP   76 (273)
T ss_pred             CCEEEEE-CCCCCcHHHHHHHHHHHHHhhCCCeEEEe---cccccccchhhcCCCCCCcHHHHHHhcCCCCCCHHHEEEe
Confidence            4789999 89999999999999999999999999998   3333211  00010 0011 11111000000000011111


Q ss_pred             e---eecCCCChhhhh-hhcCCC-CCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCC
Q psy14904         82 Y---LFKYPISPYTSS-NLENRI-INTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLK  156 (233)
Q Consensus        82 ~---~~~~~~~~~~~~-~~~~~~-~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~  156 (233)
                      .   ..-.|.+..... ...++. .....+.+.++.+.++||||||||++++...  .......+.+  ...+++|+.++
T Consensus        77 ~~~~i~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~yD~vlID~~~~~~~~--~~~~~~al~a--ad~vlip~~p~  152 (273)
T PRK13232         77 GFGDIKCVESGGPEPGVGCAGRGIITSIGLLENLGAYTDDLDYVFYDVLGDVVCG--GFAMPIREGK--AKEIYIVASGE  152 (273)
T ss_pred             CCCCeEEEeCCCCCCCCCCCCCchhHHHHHHHHcccccccCCEEEEecCCCeeEC--CEeccccccc--cceEEEecCch
Confidence            0   000111100000 000111 1123477788888889999999998665311  0010000111  13689999998


Q ss_pred             CCcHHHHHHHHHHH---HhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCC
Q psy14904        157 IGCINNALLSLEAI---NSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLN  219 (233)
Q Consensus       157 ~~~~~~~~~~~~~l---~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~  219 (233)
                      ..++..+...++.+   ++.+.++.|+|.|+.+ ..  ...+..+.+++.++.++++.||++..+.
T Consensus       153 ~~sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~-~~--~~~~~~e~l~~~~~~~vl~~Ip~~~~v~  215 (273)
T PRK13232        153 LMAIYAANNICKGLAKFAKGGARLGGIICNSRN-VD--GERELLEAFAKKLGSQLIHFVPRDNIVQ  215 (273)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCceeEEEEeCCC-CC--ccHHHHHHHHHHhCCCeEEECCCCHHHH
Confidence            77776544444444   4568889999999875 22  2345678888889999999999987654

>PRK13235 nifH nitrogenase reductase; Reviewed

Probab=99.87  E-value=1.1e-20  Score=156.88  Aligned_cols=199  Identities=13%  Similarity=0.068  Sum_probs=108.4

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCC--CCC-CccchHH-HHHHHHhCCCccc------
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNN--KNK-IWFNEDV-NLLNKYSNSLYEF------   75 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~--~~~-~l~~~d~-~~~~~~~~~~~~~------   75 (233)
                      ||+|+|+ .||||||||+|+|||.+|+++|+||+++|   .+++...  ... +...... +.+.. .+...+.      
T Consensus         1 m~~iav~-~KGGVGKTT~~~nLA~~La~~G~rVLlID---~Dpq~~~t~~l~~~~~~~~~~~~l~~-~~~~~~~~~i~~~   75 (274)
T PRK13235          1 MRKVAIY-GKGGIGKSTTTQNTVAGLAEMGKKVMVVG---CDPKADSTRLLLGGLAQKTVLDTLRE-EGEDVELEDIRKE   75 (274)
T ss_pred             CCEEEEe-CCCCccHHHHHHHHHHHHHHCCCcEEEEe---cCCcccccccccCCCCCccHHHHHHh-cCCCCCHHHHhhc
Confidence            5789999 59999999999999999999999999998   3333211  000 0011111 11110 0000000      


Q ss_pred             -ccceeeeeecCCCChhhh-hhhcCCCCCHH-HHHHHHHHh--hcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEE
Q psy14904         76 -TKLINPYLFKYPISPYTS-SNLENRIINTS-HIINCYNYL--SNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPII  150 (233)
Q Consensus        76 -~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~l~~~~~~l--~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vl  150 (233)
                       .+++...    |.+..+. ....+...... .+.+.++.+  .++||||||||++++..   ..+ .+.++......++
T Consensus        76 ~~~~l~~i----p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~yD~ilID~~~~~~~---~~l-~~~~a~~aad~vl  147 (274)
T PRK13235         76 GYGGTRCT----ESGGPEPGVGCAGRGIITSVNLLEQLGAYDDEWNLDYVFYDVLGDVVC---GGF-AMPIRDGKAEEIY  147 (274)
T ss_pred             CCCCCEEE----eCCCCCCCCCCCCCceeehhHHHHhhchhhccCCCCEEEEECCCCCcc---CCc-ccccccccccEEE
Confidence             0111111    1110000 00111111111 233444333  36899999999655421   111 1111100112588


Q ss_pred             EEEcCCCCcHHHH---HHHHHHHH-hCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCCh
Q psy14904        151 LVIDLKIGCINNA---LLSLEAIN-SRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNI  220 (233)
Q Consensus       151 lV~~~~~~~~~~~---~~~~~~l~-~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~  220 (233)
                      +++.++..++..+   ...++.++ +.++++.|+|+|+.. .  ...++..+.+++.++.++++.||++..+..
T Consensus       148 Ip~~~e~~sl~g~~~ll~~i~~~~~~~~l~i~giv~n~~~-~--~~~~e~~~~l~~~~~~~ll~~Ip~~~~v~~  218 (274)
T PRK13235        148 IVCSGEMMAMYAANNICKGILKYADAGGVRLGGLICNSRK-V--DNEREMIEELARKIGTQMIHFVPRDNFVQR  218 (274)
T ss_pred             EEecCchhHHHHHHHHHHHHHHHhhcCCCceeEEEEecCC-C--CchHHHHHHHHHHcCCceEEeCCCCHHHHH
Confidence            8888887666544   44444443 467888999999754 2  123566778888889899999999886653

>TIGR01007 eps_fam capsular exopolysaccharide family

Probab=99.87  E-value=2.8e-20  Score=148.06  Aligned_cols=169  Identities=15%  Similarity=0.149  Sum_probs=107.2

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccc-------
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFT-------   76 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-------   76 (233)
                      ..+|+|+|+|.|||+||||++.|||.+|+++|+||+++|...+++..... .+....... +..+.......+       
T Consensus        15 ~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~~~l~~~-~~~~~~~~~-l~~~l~~~~~l~~~i~~~~   92 (204)
T TIGR01007        15 AEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNSVMSGT-FKSQNKITG-LTNFLSGTTDLSDAICDTN   92 (204)
T ss_pred             CCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCChhHHHH-hCCCCCCCC-HHHHhcCCCCHHHhcccCC
Confidence            34899999999999999999999999999999999999933221110000 000000000 111111000000       


Q ss_pred             -cceeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcC
Q psy14904         77 -KLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDL  155 (233)
Q Consensus        77 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~  155 (233)
                       +++... ...+..+.....     ...+.+.+.++++++.||+|||||||...      ...+.+.....+.+++|+.+
T Consensus        93 ~~~l~~l-~~g~~~~~~~~~-----l~~~~l~~~l~~l~~~yD~ViiD~pp~~~------~~~~~~~~~~~D~vilV~~~  160 (204)
T TIGR01007        93 IENLFVI-TSGPVPPNPTEL-----LQSSNFKTLIETLRKYFDYIIIDTPPIGT------VTDAAIIARACDASILVTDA  160 (204)
T ss_pred             CCCEEEE-eCCCCCCCHHHH-----hCcHHHHHHHHHHHhcCCEEEEeCCCccc------cchHHHHHHhCCeEEEEEEC
Confidence             111111 111111111111     12356888889999999999999996321      12233343344589999999


Q ss_pred             CCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904        156 KIGCINNALLSLEAINSRGLKLIGWVANHTQ  186 (233)
Q Consensus       156 ~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~  186 (233)
                      +..+.+++...++.+++.+.+++|+|+|+++
T Consensus       161 ~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~~  191 (204)
T TIGR01007       161 GEIKKRDVQKAKEQLEQTGSNFLGVVLNKVD  191 (204)
T ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEEEeCcc
Confidence            9999999999999999999999999999998

This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.

>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=99.87  E-value=1.6e-20  Score=154.56  Aligned_cols=198  Identities=13%  Similarity=0.117  Sum_probs=126.9

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhC--CCccc----ccc
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSN--SLYEF----TKL   78 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~--~~~~~----~~~   78 (233)
                      ..++|+|+|.|||+||||+|.|||.++++.|+||+++|.+..++..... .+..+... ......|  +.+..    ...
T Consensus        56 ~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~~-l~~~~~~g-~~~~~~g~~~~~~~~~~~~~~  133 (265)
T COG0489          56 VKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRM-LGLENLPG-LTELLAGEALEPVIQHDGIKV  133 (265)
T ss_pred             cceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCCCchHHH-hCCCCCCC-cccccCCCccccceecCccce
Confidence            4679999999999999999999999999999999999955444432100 00000000 0000001  11000    011


Q ss_pred             eeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcC-CCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCC
Q psy14904         79 INPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNL-TDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKI  157 (233)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~  157 (233)
                      +. +.+..+ .+..+.+    ......+.+.+.+++.+ |||||||+||+...      ..+.+++.....+++|++++.
T Consensus       134 ls-i~~~~~-~p~~~r~----~l~s~~~~qll~~~~~~~~D~vIID~PP~~g~------~d~~i~~~~~~g~viVt~p~~  201 (265)
T COG0489         134 LS-ILPLGP-VPVIPRG----LLGSKAMLQLLEDVLWGEYDYVIIDTPPGTGD------ADATVLQRIPDGVVIVTTPGK  201 (265)
T ss_pred             EE-EEecCC-CCCCChH----hhhhHHHHHHHHHHhccCCCEEEEeCCCCchH------HHHHHHhccCCeEEEEeCCcc
Confidence            11 111111 1111111    12356788899988877 99999999988643      345666665557999999999


Q ss_pred             CcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhh-hhhHHHHHhhcCCCceEecCCCCCC
Q psy14904        158 GCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFA-NENYIELTKYLNVTPLGRIPYLYNL  218 (233)
Q Consensus       158 ~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~-~~~~~~l~~~~~~pvlg~IP~~~~l  218 (233)
                      .+...+...++.+++.+.+++|+|.|+.. ...... ....+...+.++ +++|.+|.+...
T Consensus       202 ~~~~~v~ka~~~~~~~~~~vlGvv~Nm~~-~~~~~~~~g~~~~~~~~~~-~~~g~~p~~~~~  261 (265)
T COG0489         202 TALEDVKKAIDMLEKAGIPVLGVVENMSY-FICPRCGEGGGEKYAERYG-PYLGSIPLDPSA  261 (265)
T ss_pred             chHHHHHHHHHHHHhcCCceEEEEecCcc-CcccccCCCchhhHHHHhc-cccccCCCChhh
Confidence            99898999999999999999999999776 211111 123444444556 888999887654

>PRK10818 cell division inhibitor MinD; Provisional

Probab=99.86  E-value=2.7e-20  Score=154.27  Aligned_cols=195  Identities=12%  Similarity=0.081  Sum_probs=113.8

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCC--CCCCccch-HHHHHHHHhCCCccc------
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNN--KNKIWFNE-DVNLLNKYSNSLYEF------   75 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~--~~~~l~~~-d~~~~~~~~~~~~~~------   75 (233)
                      |+|+|+|+|+||||||||+|+|||.+|+++|++|+++|   .+++...  ...+.... ...+.....+. ...      
T Consensus         1 m~kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD---~D~~~~~~~~~lg~~~~~~~~~~~~~~~~-~~~~~~~~~   76 (270)
T PRK10818          1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVID---FDIGLRNLDLIMGCERRVVYDFVNVIQGD-ATLNQALIK   76 (270)
T ss_pred             CceEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEE---CCCCCCChhhhhCCCcccccCHHHHhcCC-CcHHHhccc
Confidence            46899999999999999999999999999999999999   3332110  00011000 00111100110 000      


Q ss_pred             ---ccceeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhc-CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEE
Q psy14904         76 ---TKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSN-LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIIL  151 (233)
Q Consensus        76 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vll  151 (233)
                         .+++..  +  |......    ......+.+.+.++.++. .||||||||||++...     ... .... ...+++
T Consensus        77 ~~~~~~~~~--l--p~~~~~~----~~~~~~~~~~~~l~~l~~~~yd~viiD~p~~~~~~-----~~~-~l~~-ad~viv  141 (270)
T PRK10818         77 DKRTENLYI--L--PASQTRD----KDALTREGVAKVLDDLKAMDFEFIVCDSPAGIETG-----ALM-ALYF-ADEAII  141 (270)
T ss_pred             cCCcCCEEE--e--cCCCCcc----hhhhCHHHHHHHHHHHhhcCCCEEEEeCCCCccHH-----HHH-HHHh-CCeEEE
Confidence               011111  1  1111110    111233456777777764 8999999999887531     112 2222 236888


Q ss_pred             EEcCCCCcHHHHHHHHHHHHh-------CCCcE-EEEEEcccCCCchhhh--hhhHHHHHhhcCCCceEecCCCCCCC
Q psy14904        152 VIDLKIGCINNALLSLEAINS-------RGLKL-IGWVANHTQIVDTLFA--NENYIELTKYLNVTPLGRIPYLYNLN  219 (233)
Q Consensus       152 V~~~~~~~~~~~~~~~~~l~~-------~~~~i-~GiVlN~~~~~~~~~~--~~~~~~l~~~~~~pvlg~IP~~~~l~  219 (233)
                      |++++..++..+...++.++.       .+.++ .++|+|+++ ++....  ....+.+++.+|.++++.||++..+.
T Consensus       142 v~~p~~~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~v~  218 (270)
T PRK10818        142 TTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYN-PGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVL  218 (270)
T ss_pred             EcCCCchHHHhHHHHHHHHHHhhccccccccccceEEEEeccC-HhhhhhcccccHHHHHHHhCCcEEEEecCCHHHH
Confidence            899887777665555555431       11222 589999998 543211  11345666677999999999998655

>PRK13869 plasmid-partitioning protein RepA; Provisional

Probab=99.86  E-value=7.7e-21  Score=165.42  Aligned_cols=204  Identities=11%  Similarity=0.086  Sum_probs=116.7

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCC-CCCCccc-h---HHHHHHHHh--C-CCcccc
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNN-KNKIWFN-E---DVNLLNKYS--N-SLYEFT   76 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~-~~~~l~~-~---d~~~~~~~~--~-~~~~~~   76 (233)
                      ++++|+|+|+||||||||+|+|||.+|+++|+||+++|   .+++..- ..-|+.+ .   ....+....  + ...++.
T Consensus       120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlID---lDpQ~~lt~~~g~~~~~~~~~~~tl~~~l~~~~~~~~~~  196 (405)
T PRK13869        120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVD---LDPQASLSALLGVLPETDVGANETLYAAIRYDDTRRPLR  196 (405)
T ss_pred             CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEc---CCCCCCHHHHcCCCccccccccccHHHHHhccccCCCHH
Confidence            57899999999999999999999999999999999998   3333210 0001100 0   000011110  0 001110


Q ss_pred             cceee----eeecCCCChhhhh-hhc---------CCC-CCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHH
Q psy14904         77 KLINP----YLFKYPISPYTSS-NLE---------NRI-INTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADL  141 (233)
Q Consensus        77 ~~~~~----~~~~~~~~~~~~~-~~~---------~~~-~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l  141 (233)
                      +.+.+    -..-.|....+.. +..         ... ....+|.+.++++.++||||||||||++..     ++.+.+
T Consensus       197 ~~i~~t~~~~ldliPa~~~l~~~e~~~~~~~~~~~~~~~~~~~~L~~~L~~~~~~yD~IiIDtpP~l~~-----~t~~al  271 (405)
T PRK13869        197 DVIRPTYFDGLHLVPGNLELMEFEHTTPKALSDKGTRDGLFFTRVAQAFDEVADDYDVVVIDCPPQLGF-----LTLSGL  271 (405)
T ss_pred             HheeccCCCCeeEecCCHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHhhccCCEEEEECCCchhH-----HHHHHH
Confidence            11111    0111233332211 000         000 112468889999999999999999988742     233333


Q ss_pred             HHHhCCCEEEEEcCCCCcHHH---HHH----HHHHHHh----CCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce-
Q psy14904        142 AEKLGLPIILVIDLKIGCINN---ALL----SLEAINS----RGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL-  209 (233)
Q Consensus       142 ~~~~~~~vllV~~~~~~~~~~---~~~----~~~~l~~----~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl-  209 (233)
                      .++  .-+|+++.++.-++..   ++.    .++.+++    .+..++|+|+|+++ ++...+.+..+.+++.++-+++ 
T Consensus       272 ~aA--d~viiPv~p~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~il~t~~~-~~~~~~~~~~~~l~~~~~~~vl~  348 (405)
T PRK13869        272 CAA--TSMVITVHPQMLDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTRYE-PQDAPQTKVAALLRNMFEDHVLT  348 (405)
T ss_pred             HHc--CEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEEEEeEC-CCCcHHHHHHHHHHHHhhhhhcc
Confidence            332  2467777766544433   332    1223332    23457899999998 6665667788888888887777 


Q ss_pred             EecCCCCCCC
Q psy14904        210 GRIPYLYNLN  219 (233)
Q Consensus       210 g~IP~~~~l~  219 (233)
                      ..||++..+.
T Consensus       349 ~~I~~s~ai~  358 (405)
T PRK13869        349 NPMVKSAAVS  358 (405)
T ss_pred             CcCcchHHHH
Confidence            4577776544

>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]

Probab=99.86  E-value=2.8e-21  Score=158.08  Aligned_cols=197  Identities=16%  Similarity=0.139  Sum_probs=119.3

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHH-HHHHHHcCCeeeEEeeeecCcccCC--CCCCccchHHHHHHHHhCCCccccccee-
Q psy14904          5 NFLHYFITGTNTNIGKTIISCAL-LSEFKKRGISCIGMKPIASGAYLNN--KNKIWFNEDVNLLNKYSNSLYEFTKLIN-   80 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~L-a~~l~~~G~~Vl~~dp~~~~~~~~~--~~~~l~~~d~~~~~~~~~~~~~~~~~~~-   80 (233)
                      ++++|+|+|.|||+||||+|+|| +..++.+|++|+++|.   +.....  ..-++.+.-.. +.....-..++.+.+. 
T Consensus         1 ~~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDa---D~g~~nL~~~~g~~~~~~~-l~dvL~~~~~~~Di~~~   76 (262)
T COG0455           1 MTKVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDA---DLGLGNLSLLLGVESKPTT-LHDVLAGEASIEDIIYE   76 (262)
T ss_pred             CCEEEEEEecCCCccHHHHHHhHHHHHHhhCCCeEEEEec---CCCCCcHHHHhCCCCCccc-HHHHHhCCCCHhHeeee
Confidence            46899999999999999999999 5555556778799993   222110  00011110000 2222111111101111 


Q ss_pred             -e--eeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCC
Q psy14904         81 -P--YLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKI  157 (233)
Q Consensus        81 -~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~  157 (233)
                       +  -.+-.|.+....   +....+.+++...++++.+.||||||||++|+..+.      ....... ..+++|+.++.
T Consensus        77 ~~~~gl~vipg~~~~~---~~~~~~~~~~~~~~~~l~~~~D~iliD~~aGl~~~~------~~~~~~s-d~~viVt~pe~  146 (262)
T COG0455          77 TPQDGLYVLPGGSGLE---DLAKLDPEDLEDVIKELEELYDYILIDTGAGLSRDT------LSFILSS-DELVIVTTPEP  146 (262)
T ss_pred             cCcCCEEEeeCCCChH---HHhhcCHHHHHHHHHHHHhcCCEEEEeCCCCccHHH------HHHHHhc-CcEEEEeCCCc
Confidence             0  001112221111   113456788888899999999999999999986422      1222222 47899999999


Q ss_pred             CcHHHHHHHHHHHHhCCCcEEE--EEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCC
Q psy14904        158 GCINNALLSLEAINSRGLKLIG--WVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLY  216 (233)
Q Consensus       158 ~~~~~~~~~~~~l~~~~~~i~G--iVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~  216 (233)
                      .++.++..+++.+++.+....+  +|+||++ +..+..+......+.....+.+..||+++
T Consensus       147 ~si~~A~~~i~~~~~~~~~~~~~~vV~N~v~-~~~e~~~~~~~~~~~~~~~~~~~~i~~~~  206 (262)
T COG0455         147 TSITDAYKTIKILSKLGLDLLGRRVVLNRVR-STKEGVDVAALLIQVVKQVPVLQVIPFDP  206 (262)
T ss_pred             chHHHHHHHHHHHHHcCCccccceEEEEecc-cccchhHHHHHHHHHHHhCCceeEeccCh
Confidence            9999999999999999999988  9999997 32221111222222222445778888888

>PRK13233 nifH nitrogenase reductase; Reviewed

Probab=99.86  E-value=5.3e-21  Score=158.95  Aligned_cols=204  Identities=10%  Similarity=0.026  Sum_probs=110.7

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHH-cCCeeeEEeeeecCcccCCC--CCCc-cchH-HHHHHHHhCCCcccccce
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKK-RGISCIGMKPIASGAYLNNK--NKIW-FNED-VNLLNKYSNSLYEFTKLI   79 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~-~G~~Vl~~dp~~~~~~~~~~--~~~l-~~~d-~~~~~~~~~~~~~~~~~~   79 (233)
                      |+++|+|+ +||||||||+|.|||.+|++ +|+||+++|   .+++....  ..+. .... .+.+.......... +.+
T Consensus         1 M~~vIav~-~KGGVGKTT~a~nLA~~La~~~G~rvLliD---~Dpq~~~t~~~~g~~~~~~l~~~l~~~~~~~~~~-~~~   75 (275)
T PRK13233          1 MTRKIAIY-GKGGIGKSTTTQNTAAAMAYFHDKKVFIHG---CDPKADSTRLILGGKPQTTMMDTLRELGEEKVTP-DKV   75 (275)
T ss_pred             CceEEEEE-cCCCCcHHHHHHHHHHHHHHhcCCeEEEec---cCcCcChHHHHhCCCCCCcHHHHHHHhCCCCCCH-HHH
Confidence            46899999 79999999999999999997 699999998   33332110  0000 0000 11111000000000 000


Q ss_pred             e----eeeecCCCChhhhh-hhcCCCC-CHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEE
Q psy14904         80 N----PYLFKYPISPYTSS-NLENRII-NTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVI  153 (233)
Q Consensus        80 ~----~~~~~~~~~~~~~~-~~~~~~~-~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~  153 (233)
                      .    +...-.|....+.. ...+... ...++.+.++.+.++||||||||++.+..   ..+. +.+.......+++++
T Consensus        76 ~~~~~~~l~~ipa~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~yD~iliD~~~~~~~---~al~-~~~~~~aad~viIp~  151 (275)
T PRK13233         76 IKTGFKDIRCVESGGPEPGVGCAGRGVITAIDLMEENGAYTDDLDFVFFDVLGDVVC---GGFA-MPIRDGKAQEVYIVA  151 (275)
T ss_pred             eeeCCCCcEEEECCCCCCCCCCCCcchhHHHHHHHHcCCccCCCCEEEEecCCceee---cccc-ccchhccCceEEEec
Confidence            0    00000111111110 0001110 01125667777888999999999543321   1111 000000112588888


Q ss_pred             cCCCCcHHHHHHHHHHH----HhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCCh
Q psy14904        154 DLKIGCINNALLSLEAI----NSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNI  220 (233)
Q Consensus       154 ~~~~~~~~~~~~~~~~l----~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~  220 (233)
                      .++..++..+...++.+    ++.+++++|+|+|+.. ..  ...+..+.+++.++.++++.||+++.+..
T Consensus       152 ~p~~~sl~g~~~l~~~i~~~~~~~~l~~~Giv~n~~~-~~--~~~~~~e~l~~~~~~~~l~~Ip~~~~v~~  219 (275)
T PRK13233        152 SGEMMAIYAANNICKGLVKYAEQSGVRLGGIICNSRN-VD--GELELLEEFTDAIGTQMIHFVPRDNIVQK  219 (275)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhcCCCceeEEEeeCCC-CC--cHHHHHHHHHHHcCCceeeecCcchHHHH
Confidence            88866655443333222    4678999999999764 21  23456788888889999999999987653

>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ

Probab=99.86  E-value=2.6e-20  Score=152.25  Aligned_cols=199  Identities=11%  Similarity=0.040  Sum_probs=111.3

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccC-CCCCCccch-HHHHHHHHhCCCccc-------c
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLN-NKNKIWFNE-DVNLLNKYSNSLYEF-------T   76 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~-~~~~~l~~~-d~~~~~~~~~~~~~~-------~   76 (233)
                      ||+|+|+|+|||+||||+|.|||.+|+++|+||+++|   .+++.. ...-+.... ...+.....+ ...+       .
T Consensus         1 m~iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD---~D~q~~l~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~   76 (246)
T TIGR03371         1 MKVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAID---LDPQNLLRLHFGMDWSVRDGWARALLN-GEPWAAAAYRSS   76 (246)
T ss_pred             CcEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEe---CCCcchHHHHhCCCCccCCcHHHHHhc-CCChHHhHhhcC
Confidence            6899999999999999999999999999999999999   333211 000000000 0000000000 0000       0


Q ss_pred             cceeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcC-CCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcC
Q psy14904         77 KLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNL-TDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDL  155 (233)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~  155 (233)
                      .++.  ....+......... .......++++.++.++.. ||+|||||||++.. +     ...... ....+++++.+
T Consensus        77 ~~l~--~ip~~~~~~~~~~~-~~~~~~~~l~~~l~~l~~~~~D~viiD~pp~~~~-~-----~~~~l~-~ad~vii~~~~  146 (246)
T TIGR03371        77 DGVL--FLPFGDLSADEREA-YQAHDAGWLARLLQQLDLAARDWVLIDVPRGPSP-I-----TRQALA-AADLVLVVVNA  146 (246)
T ss_pred             CCeE--EecCCCCcHHHHHH-HhhcCHHHHHHHHHhcccCCCCEEEEECCCCchH-H-----HHHHHH-hCCeEEEEeCC
Confidence            1111  11100000000000 0011235677778887654 69999999987542 1     112222 22468888888


Q ss_pred             CCCcHHHHHHHH-HHHHhCC-CcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce-EecCCCCCCC
Q psy14904        156 KIGCINNALLSL-EAINSRG-LKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL-GRIPYLYNLN  219 (233)
Q Consensus       156 ~~~~~~~~~~~~-~~l~~~~-~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl-g~IP~~~~l~  219 (233)
                      +..++..+...+ +.++..+ ....++|+|+++ ++...+++..+.+++.++.+++ +.||++..+.
T Consensus       147 ~~~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~  212 (246)
T TIGR03371       147 DAACYATLHQQALALFAGSGPRIGPHFLINQFD-PARQLSRDVRAVLRQTLGSRLLPFVIHRDEAVS  212 (246)
T ss_pred             CHHHHHHHHHHHHHHhhcccccccceEEeeccC-cchhhHHHHHHHHHHHhcccccCCcccchhhHH
Confidence            866655544222 2333121 223789999998 6554556667778888888755 6788877654

Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=99.86  E-value=1.5e-20  Score=146.59  Aligned_cols=174  Identities=14%  Similarity=0.123  Sum_probs=102.2

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeee-ecC
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYL-FKY   86 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~   86 (233)
                      .|+|+|.|||+||||+|+|||.+|    +||+++|   .+++...    +        ...++.+...  ... .. ...
T Consensus         1 ~I~v~s~kgG~GKSt~a~nLA~~l----~~vlliD---~D~~~~~----~--------~~~~~~~~~~--~~~-~~~~~~   58 (179)
T cd03110           1 QIAVISGKGGTGKTTVTAALAALL----KNVVLAD---CDVDAPN----L--------HLFLKPEIEE--EED-FIVGGK   58 (179)
T ss_pred             CEEEEcCCCCCCHHHHHHHHHHHH----hCcEEEE---CCCCCCc----h--------hhhcCCCccc--ccc-ceecCC
Confidence            389999999999999999999999    8999999   4333211    0        1112221100  000 00 000


Q ss_pred             -CCChhhhhhhcCC-CCCHHHHHHHHHHh--hcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHH
Q psy14904         87 -PISPYTSSNLENR-IINTSHIINCYNYL--SNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINN  162 (233)
Q Consensus        87 -~~~~~~~~~~~~~-~~~~~~l~~~~~~l--~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~  162 (233)
                       +..........+. ....+.+.+.+..+  .+.||||||||||+....      ....... ...+++|+.++..++..
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viiDtpp~~~~~------~~~~l~~-aD~vliv~~~~~~~~~~  131 (179)
T cd03110          59 KAVIDPELCISCGLCGKLVTEVRKHAKEIAKAEGAELIIIDGPPGIGCP------VIASLTG-ADAALLVTEPTPSGLHD  131 (179)
T ss_pred             ceEEchhhhccccchHHHHHHHHHHHHHhhhhcCCCEEEEECcCCCcHH------HHHHHHc-CCEEEEEecCCcccHHH
Confidence             0000000000000 00012222222221  378999999999886421      1222222 23688999998888888


Q ss_pred             HHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecC
Q psy14904        163 ALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIP  213 (233)
Q Consensus       163 ~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP  213 (233)
                      +...++.+++.+.+ .++|+||++ ++....++..+.++ .+|+|++|.||
T Consensus       132 ~~~~~~~l~~~~~~-~~vV~N~~~-~~~~~~~~~~~~~~-~~~~~vl~~ip  179 (179)
T cd03110         132 LERAVELVRHFGIP-VGVVINKYD-LNDEIAEEIEDYCE-EEGIPILGKIP  179 (179)
T ss_pred             HHHHHHHHHHcCCC-EEEEEeCCC-CCcchHHHHHHHHH-HcCCCeEEeCC
Confidence            88888888877877 589999998 54433344445555 46999999998

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>PHA02518 ParA-like protein; Provisional

Probab=99.86  E-value=6.9e-21  Score=152.03  Aligned_cols=169  Identities=13%  Similarity=0.077  Sum_probs=105.9

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeecC
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKY   86 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~   86 (233)
                      ++|+|+|.||||||||+|.|||.+|+++|++|+++|   .+++..         ...|......      ..  +. +  
T Consensus         1 ~ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD---~D~q~~---------~~~~~~~~~~------~~--~~-i--   57 (211)
T PHA02518          1 KIIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVD---LDPQGS---------STDWAEAREE------GE--PL-I--   57 (211)
T ss_pred             CEEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEe---CCCCCC---------hHHHHHhccc------CC--CC-C--
Confidence            589999999999999999999999999999999999   555431         1122221100      00  00 0  


Q ss_pred             CCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHH
Q psy14904         87 PISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLS  166 (233)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~  166 (233)
                      +..+           ....+.+.+.++.+.||+|||||||+... .     ....... ..-+|+++.++..++..+...
T Consensus        58 ~~~~-----------~~~~~~~~l~~~~~~~d~viiD~p~~~~~-~-----~~~~l~~-aD~viip~~ps~~~~~~~~~~  119 (211)
T PHA02518         58 PVVR-----------MGKSIRADLPKVASGYDYVVVDGAPQDSE-L-----ARAALRI-ADMVLIPVQPSPFDIWAAPDL  119 (211)
T ss_pred             chhh-----------ccHHHHHHHHHHhccCCEEEEeCCCCccH-H-----HHHHHHH-CCEEEEEeCCChhhHHHHHHH
Confidence            0000           01345667777888999999999988532 1     1122222 236888888876655544333


Q ss_pred             HHHHH-----hCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEe-cCCCCCC
Q psy14904        167 LEAIN-----SRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGR-IPYLYNL  218 (233)
Q Consensus       167 ~~~l~-----~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~-IP~~~~l  218 (233)
                      .+.++     +.+.+..++|.|+++ ++.....+..+.+++ .+.|++.. +|++..+
T Consensus       120 ~~~~~~~~~~~~~~~~~~iv~n~~~-~~~~~~~~~~~~l~~-~~~~~~~~~i~~~~~~  175 (211)
T PHA02518        120 VELIKARQEVTDGLPKFAFIISRAI-KNTQLYREARKALAG-YGLPILRNGTTQRVAY  175 (211)
T ss_pred             HHHHHHHHhhCCCCceEEEEEeccC-CcchHHHHHHHHHHH-cCchhhhchhhhHHHH
Confidence            33332     346778899999987 544444555666654 48888865 4444433

>KOG3022|consensus

Probab=99.86  E-value=3.4e-21  Score=154.35  Aligned_cols=203  Identities=12%  Similarity=0.062  Sum_probs=127.9

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCc-ccccce---ee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLY-EFTKLI---NP   81 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~---~~   81 (233)
                      .++|+|+|.||||||||+|.|||.+|++.|.+|+++|-+.+|+.... ..|+..+.  .++...|... ....++   .-
T Consensus        47 k~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglLD~Dl~GPSiP~-m~g~e~~~--~~~~~~g~~Pv~~~~~l~~mS~  123 (300)
T KOG3022|consen   47 KHIILVLSGKGGVGKSTVTVNLALALASEGKKVGLLDADLCGPSIPR-MMGLEGEV--VHQSDNGWIPVVVNKNLKLMSM  123 (300)
T ss_pred             ceEEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEEEeecccCCCchh-hcCCCCce--eeecCCCceeeeecCCeEEEEe
Confidence            46899999999999999999999999999999999996655554210 01111000  0110011000 000111   10


Q ss_pred             eeecCC-CChhhhhhhcCCC-CCHHHHHHHHHHhh-cCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCC
Q psy14904         82 YLFKYP-ISPYTSSNLENRI-INTSHIINCYNYLS-NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIG  158 (233)
Q Consensus        82 ~~~~~~-~~~~~~~~~~~~~-~~~~~l~~~~~~l~-~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~  158 (233)
                      ..+..+ ..+-.     .+. .....+++.+.... .+.||+|||||||.+..   .++....+... ...++|++++.-
T Consensus       124 gfLl~~~~~~vI-----wRGpkk~~~I~qflk~vdwg~lDyLviDtPPGtsDe---hls~~~~~~~~-~gAviVTTPQ~v  194 (300)
T KOG3022|consen  124 GFLLKPRDDSVI-----WRGPKKNSMIKQFLKDVDWGELDYLVIDTPPGTSDE---HLSLVQFLRES-DGAVIVTTPQEV  194 (300)
T ss_pred             eeecCCCCccce-----eechHHHHHHHHHHhcCCCCCcCEEEEeCCCCCChh---hhheeeccccc-CceEEEeCchhh
Confidence            011110 00000     111 12356777776654 46899999999998652   33344444321 247889999988


Q ss_pred             cHHHHHHHHHHHHhCCCcEEEEEEcccC--CCch----hhh-hhhHHHHHhhcCCCceEecCCCCCCCh
Q psy14904        159 CINNALLSLEAINSRGLKLIGWVANHTQ--IVDT----LFA-NENYIELTKYLNVTPLGRIPYLYNLNI  220 (233)
Q Consensus       159 ~~~~~~~~~~~l~~~~~~i~GiVlN~~~--~~~~----~~~-~~~~~~l~~~~~~pvlg~IP~~~~l~~  220 (233)
                      ++.++.+.+...++.+++++|+|-||..  ++.-    ..+ ..-.+.+.+.+|+|++|.||.++.+..
T Consensus       195 Al~Dv~K~i~fc~K~~I~ilGvVENMs~f~Cp~C~~~~~iF~~gGg~~l~~~~glp~Lg~iPld~~i~~  263 (300)
T KOG3022|consen  195 ALQDVRKEIDFCRKAGIPILGVVENMSGFVCPKCGHSTNIFGSGGGERLAEELGLPLLGSLPLDPLIAE  263 (300)
T ss_pred             hhHHHHhhhhhhhhcCCceEEEEeccccccCCCCCCcceeccCccHHHHHHHcCCCeEeecCCCHHHHH
Confidence            8889999999999999999999999976  2321    111 122467778899999999999987653

>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional

Probab=99.86  E-value=2.3e-20  Score=154.71  Aligned_cols=194  Identities=15%  Similarity=0.103  Sum_probs=104.9

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCcc---chH-HHHHHHHh--CCCcccc--
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWF---NED-VNLLNKYS--NSLYEFT--   76 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~---~~d-~~~~~~~~--~~~~~~~--   76 (233)
                      |+++|+|+ +||||||||+|.|||.+|+++|+||+++|   .+++.... ..+.   ... .+.+....  .......  
T Consensus         1 m~~iIav~-~KGGVGKTT~~~nLA~~la~~G~kVLliD---~Dpq~~~t-~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~   75 (270)
T PRK13185          1 MALVLAVY-GKGGIGKSTTSSNLSAAFAKLGKKVLQIG---CDPKHDST-FTLTGKLVPTVIDILEEVDFHSEELRPEDF   75 (270)
T ss_pred             CceEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEe---ccCCcchh-hhhcCCCCCcHHHHHHhccccccCCCHHHh
Confidence            46899999 59999999999999999999999999998   33332100 0010   000 01111000  0000010  


Q ss_pred             -----cceeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHH--hhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCE
Q psy14904         77 -----KLINPYLFKYPISPYTSSNLENRIINTSHIINCYNY--LSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPI  149 (233)
Q Consensus        77 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~v  149 (233)
                           ++++..    |.+..+.. ............+.+++  +.++||||||||++++....   + .+.+.. . ..+
T Consensus        76 i~~~~~~l~~i----p~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~yD~viIDt~g~~~~~~---~-~~~l~~-A-D~v  144 (270)
T PRK13185         76 VYEGYNGVDCV----EAGGPPAG-TGCGGYVVGETVKLLKEHHLLDDYDVILFDVLGDVVCGG---F-AAPLQY-A-DYA  144 (270)
T ss_pred             eeeCCCCcEEE----ECCCCCCC-CCccchhHHHHHHHHHhcCccccCCEEEEecCCCcccCc---c-cchhhh-C-cEE
Confidence                 111111    11111100 00000001111122222  45689999999976653211   1 111111 1 257


Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH----hCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCCh
Q psy14904        150 ILVIDLKIGCINNALLSLEAIN----SRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNI  220 (233)
Q Consensus       150 llV~~~~~~~~~~~~~~~~~l~----~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~  220 (233)
                      |+++.++..++..+...++.++    +.++++.|+|+|+++ ..     ...+.+.+.++.++++.||++..+..
T Consensus       145 iip~~~~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~-~~-----~~~~~~~~~~g~~vl~~Ip~~~~i~~  213 (270)
T PRK13185        145 LIVTANDFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSA-GT-----DLIDKFNEAVGLKVLAHVPDLDAIRR  213 (270)
T ss_pred             EEEecCchhhHHHHHHHHHHHHhhhhccCCCceEEEEeccC-hH-----HHHHHHHHHcCCCEEEECCCCcccCh
Confidence            8888887766655444444332    567888999999987 31     23445555679999999999987664

>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase

Probab=99.85  E-value=1.8e-20  Score=155.17  Aligned_cols=203  Identities=14%  Similarity=0.077  Sum_probs=108.1

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCC--CCCcc-chH-HHHHHHHhCCCcccccceee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNK--NKIWF-NED-VNLLNKYSNSLYEFTKLINP   81 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~--~~~l~-~~d-~~~~~~~~~~~~~~~~~~~~   81 (233)
                      ||+|+|++ ||||||||+|.|||.+|+++|+||+++|   .+++....  ..+.. ... ...+...........+.+..
T Consensus         1 m~~iav~~-KGGvGKTT~~~nLA~~La~~G~kVlliD---~Dpq~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~   76 (270)
T cd02040           1 MRQIAIYG-KGGIGKSTTTQNLSAALAEMGKKVMIVG---CDPKADSTRLLLGGKAIPTVLDTLREKGEVELELEDVIFE   76 (270)
T ss_pred             CcEEEEEe-CCcCCHHHHHHHHHHHHHhCCCeEEEEE---cCCCCCchhhhcCCCCCCcHHHHHHhhcccccchhhheee
Confidence            68899995 9999999999999999999999999998   33332110  00000 000 01111100000001000100


Q ss_pred             ---eeecCCCChhhhh-hhcCCC-CCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCC
Q psy14904         82 ---YLFKYPISPYTSS-NLENRI-INTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLK  156 (233)
Q Consensus        82 ---~~~~~~~~~~~~~-~~~~~~-~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~  156 (233)
                         ...-.|.+..+.. ...... .....+.+.++.+.++||||||||++++...   .+. ..++......+++++.++
T Consensus        77 ~~~~l~~ip~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~yD~viID~~g~~~~~---~~~-~~~~~~aaD~vlip~~p~  152 (270)
T cd02040          77 GFGGIKCVESGGPEPGVGCAGRGVITAINLLEELGAYEDDLDFVIYDVLGDVVCG---GFA-MPIREGKAQEIYIVTSGE  152 (270)
T ss_pred             cCCCeEEEeCCCCCCCCCCcCcchhhHHHHHHhcCccccCCCEEEEecccCcccC---Ccc-cccccccccEEEEEecCc
Confidence               0000011111100 000000 0111233445556678999999997654210   111 001100123688888888


Q ss_pred             CCcHHHHHHH---HHHHH-hCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCC
Q psy14904        157 IGCINNALLS---LEAIN-SRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLN  219 (233)
Q Consensus       157 ~~~~~~~~~~---~~~l~-~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~  219 (233)
                      ..++..+...   ++.+. +.+.++.|+|.|+.+ .  ....+..+.+++.++.++++.||++..+.
T Consensus       153 ~~sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~~~-~--~~~~~~~~~l~~~~g~~vl~~Ip~~~~v~  216 (270)
T cd02040         153 MMALYAANNICKGILKYAKSGGVRLGGLICNSRN-T--DREDELIDAFAKRLGTQMIHFVPRDNVVQ  216 (270)
T ss_pred             hHHHHHHHHHHHHHHHhCccCCCceEEEEEecCC-C--hhHHHHHHHHHHHcCCCeEeecCCcHHHH
Confidence            7666544333   33332 346889999999865 2  23345677787788999999999998654

Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.

>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG

Probab=99.85  E-value=1.1e-19  Score=151.01  Aligned_cols=167  Identities=11%  Similarity=0.119  Sum_probs=106.6

Q ss_pred             CCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCccc-------
Q psy14904          3 NKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEF-------   75 (233)
Q Consensus         3 ~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~-------   75 (233)
                      .+..++|+|+|.|||+||||++.|||.+|++.|+||+++|.....+..... -++.+ ...+.....|. ...       
T Consensus       100 ~~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~~~~~~~~~-~~~~~-~~gl~~~l~~~-~~~~~i~~~~  176 (274)
T TIGR03029       100 SEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPVQHRN-FKLSE-QRGLSDILAGR-SDLEVITHIP  176 (274)
T ss_pred             CCCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCccHHHh-cCCCC-CCCHHHHhCCC-CCHHHeeecC
Confidence            456789999999999999999999999999999999999943222211000 00000 00000111111 000       


Q ss_pred             -ccceeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEc
Q psy14904         76 -TKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVID  154 (233)
Q Consensus        76 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~  154 (233)
                       ..++.-.... ...++....     ...+++.+.++++++.||||||||||...      ...+.+.....+.+++|+.
T Consensus       177 ~~~~l~~lp~g-~~~~~~~~~-----~~~~~~~~~l~~l~~~yD~ViiD~pp~~~------~~d~~~~~~~~d~vilV~~  244 (274)
T TIGR03029       177 ALENLSVLPAG-AIPPNPQEL-----LARPAFTDLLNKVMGDYDVVIVDTPSAEH------SSDAQIVATRARGTLIVSR  244 (274)
T ss_pred             CCCCEEEEeCc-CCCCCHHHH-----hCcHHHHHHHHHHHhcCCEEEEeCCCccc------ccHHHHHHHhCCeEEEEEE
Confidence             0111111111 001111110     12357888899999999999999997642      1233334444457999999


Q ss_pred             CCCCcHHHHHHHHHHHHhCCCcEEEEEEcc
Q psy14904        155 LKIGCINNALLSLEAINSRGLKLIGWVANH  184 (233)
Q Consensus       155 ~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~  184 (233)
                      ++..+..++...++.+++.+.+++|+|+|+
T Consensus       245 ~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~  274 (274)
T TIGR03029       245 VNETRLHELTSLKEHLSGVGVRVVGAVLNQ  274 (274)
T ss_pred             CCCCCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence            999999999999999999999999999996

The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).

>TIGR03453 partition_RepA plasmid partitioning protein RepA

Probab=99.84  E-value=9.8e-20  Score=158.18  Aligned_cols=204  Identities=10%  Similarity=0.084  Sum_probs=115.6

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCC-CCCccc------hH-H-HHHHHHhCCCcc
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNK-NKIWFN------ED-V-NLLNKYSNSLYE   74 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~-~~~l~~------~d-~-~~~~~~~~~~~~   74 (233)
                      +++++|+|+|.||||||||+|+|||.+|+++|+||+++|   .+++..-. .-++.+      .. . .++....+ ..+
T Consensus       102 ~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID---~DpQ~~ls~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~  177 (387)
T TIGR03453       102 EHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAID---LDPQASLSALFGYQPEFDVGENETLYGAIRYDDE-RRP  177 (387)
T ss_pred             CCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEe---cCCCCCHHHHcCCCcccccccCccHHHHHhcccc-ccC
Confidence            357899999999999999999999999999999999998   33332100 001100      00 0 01110000 001


Q ss_pred             ccccee----eeeecCCCChhhhh-------hh-cCC---CCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchH
Q psy14904         75 FTKLIN----PYLFKYPISPYTSS-------NL-ENR---IINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSA  139 (233)
Q Consensus        75 ~~~~~~----~~~~~~~~~~~~~~-------~~-~~~---~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~  139 (233)
                      ..+.+.    +...-.|....+..       .. ...   ......+.+.++++.++||+|||||||++..     .+..
T Consensus       178 l~~~i~~~~~~~l~lip~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~IiiD~pp~~~~-----~~~~  252 (387)
T TIGR03453       178 LSEIIRKTYFPGLDLVPGNLELMEFEHETPRALSRGQGGDTIFFARVGEALAEVEDDYDVVVIDCPPQLGF-----LTLS  252 (387)
T ss_pred             HHhhcccCCCCCeEEEeCCHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHhcCCEEEEeCCccHhH-----HHHH
Confidence            100110    00111122222110       00 000   0112468888899999999999999988642     1223


Q ss_pred             HHHHHhCCCEEEEEcCCCCcHHHH---HH----HHHHHHh----CCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCc
Q psy14904        140 DLAEKLGLPIILVIDLKIGCINNA---LL----SLEAINS----RGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTP  208 (233)
Q Consensus       140 ~l~~~~~~~vllV~~~~~~~~~~~---~~----~~~~l~~----~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pv  208 (233)
                      .+..+  .-+|+++.++..++..+   ..    ..+.++.    .+..+.|+|+|+++ ++...+.+..+.+++.++.++
T Consensus       253 al~aa--d~viipv~p~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~-~~~~~~~~~~~~l~~~~~~~v  329 (387)
T TIGR03453       253 ALCAA--TGVLITVHPQMLDVMSMSQFLLMTGDLLGVVREAGGNLSYDFMRYLVTRYE-PNDGPQAQMVAFLRSLFGDHV  329 (387)
T ss_pred             HHHHc--CeeEEcCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEeeEC-CCCccHHHHHHHHHHHhcccc
Confidence            33322  35677777654333322   11    1222332    34567899999998 655556677788888888878


Q ss_pred             e-EecCCCCCCC
Q psy14904        209 L-GRIPYLYNLN  219 (233)
Q Consensus       209 l-g~IP~~~~l~  219 (233)
                      + ..||++..+.
T Consensus       330 l~~~I~~~~~~~  341 (387)
T TIGR03453       330 LTNPMLKSTAIS  341 (387)
T ss_pred             ccccccccHHHH
Confidence            7 4688876554

Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.

>cd02032 Bchl_like This family of proteins contains bchL and chlL

Probab=99.84  E-value=5.4e-20  Score=152.29  Aligned_cols=195  Identities=15%  Similarity=0.117  Sum_probs=103.3

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCc---cchH-HHHHHHH---hCCCccccccee
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIW---FNED-VNLLNKY---SNSLYEFTKLIN   80 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l---~~~d-~~~~~~~---~~~~~~~~~~~~   80 (233)
                      +|+|+| ||||||||+|+|||.+|+++|+||+++|   .+++.... ..+   .... .+.+...   .+ ..+..+.+.
T Consensus         2 ~i~v~g-KGGvGKTT~a~nLA~~la~~G~rvlliD---~Dpq~~~~-~~l~~~~~~~l~~~~~~~~~~~~-~~~~~~~i~   75 (267)
T cd02032           2 VLAVYG-KGGIGKSTTSSNLSVALAKRGKKVLQIG---CDPKHDST-FTLTGFLIPTVIDILEEVDFHYE-ELWPEDVIY   75 (267)
T ss_pred             EEEEec-CCCCCHHHHHHHHHHHHHHCCCcEEEEe---cCCCCCcc-eeccCCCCCCHHHHHHhcccccc-CCChhheEE
Confidence            488886 9999999999999999999999999998   33332100 011   0001 1111100   01 001101111


Q ss_pred             ee---eecCCCChhhhhhhcCCCCCHHHHHHHHHH--hhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcC
Q psy14904         81 PY---LFKYPISPYTSSNLENRIINTSHIINCYNY--LSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDL  155 (233)
Q Consensus        81 ~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~  155 (233)
                      ..   ..-.|.+..+.. .+........-...+++  +.++||||||||+|++..+.   . .+. +... +.+++++.+
T Consensus        76 ~~~~~l~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~yD~vIIDt~g~~~~~~---~-~~a-l~~a-D~vlip~~p  148 (267)
T cd02032          76 EGYGGVDCVEAGGPPAG-AGCGGYVVGETVKLLKELNLFEEYDVILFDVLGDVVCGG---F-AAP-LNYA-DYALIVTDN  148 (267)
T ss_pred             ECCCCcEEEEcCCCCCC-ccccchHHHHHHHHHHHccccccCCEEEEeCCCCccccc---c-hhh-hhhc-CEEEEEecC
Confidence            00   000011110100 00000000111112222  45689999999987654321   1 111 1111 257888888


Q ss_pred             CCCcHHHHHHHHHHH----HhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCChh
Q psy14904        156 KIGCINNALLSLEAI----NSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNIN  221 (233)
Q Consensus       156 ~~~~~~~~~~~~~~l----~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~~  221 (233)
                      +..++..+...++.+    ++.++++.|+|+||++ ++     ...+.+.+.++.++++.||++..+...
T Consensus       149 ~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~-~~-----~~i~~~~~~~~~~vl~~Ip~~~~v~~A  212 (267)
T cd02032         149 DFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTD-KT-----DLIDKFVEAVGMPVLAVLPLIEDIRRS  212 (267)
T ss_pred             CcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCC-HH-----HHHHHHHHhCCCCEEEEecCCccccHH
Confidence            866655544444333    2467888999999998 42     233445556799999999999887643

Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.

>PRK13849 putative crown gall tumor protein VirC1; Provisional

Probab=99.84  E-value=5.8e-20  Score=148.53  Aligned_cols=172  Identities=10%  Similarity=0.011  Sum_probs=98.7

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeec
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFK   85 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~   85 (233)
                      |++|+|+|+||||||||++.|||.+|+++|++|+++|   .|++..         -..|......      +...+....
T Consensus         1 M~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD---~DpQ~s---------~~~w~~~~~~------~~~~~~~~~   62 (231)
T PRK13849          1 MKLLTFCSFKGGAGKTTALMGLCAALASDGKRVALFE---ADENRP---------LTRWKENALR------SNTWDPACE   62 (231)
T ss_pred             CeEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEe---CCCCCC---------HHHHHHhhcc------ccCCCccce
Confidence            5799999999999999999999999999999999999   555531         1223322111      000000000


Q ss_pred             CCCChhhhhhhcCCCCCHHHHHHHHHHhh-cCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHH
Q psy14904         86 YPISPYTSSNLENRIINTSHIINCYNYLS-NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNAL  164 (233)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~  164 (233)
                      ..           .......+.+.++... ++||||||||||+... .    ... ..... .-+|+++.++..++..+.
T Consensus        63 ~~-----------~~~~~~~l~~~l~~~~~~~yD~iiID~pp~~~~-~----~~~-al~~a-D~vliP~~ps~~d~~~~~  124 (231)
T PRK13849         63 VY-----------AADELPLLEAAYEDAELQGFDYALADTHGGSSE-L----NNT-IIASS-NLLLIPTMLTPLDIDEAL  124 (231)
T ss_pred             ec-----------CCCHHHHHHHHHHHHhhCCCCEEEEeCCCCccH-H----HHH-HHHHC-CEEEEeccCcHHHHHHHH
Confidence            00           0011234666666664 6799999999987642 1    111 11222 246667776655554444


Q ss_pred             HHHHHHH------hCCCcEEEEEEcccCCCchh-hhhhhHHHHHhhcCCCceE-ecCCCCC
Q psy14904        165 LSLEAIN------SRGLKLIGWVANHTQIVDTL-FANENYIELTKYLNVTPLG-RIPYLYN  217 (233)
Q Consensus       165 ~~~~~l~------~~~~~i~GiVlN~~~~~~~~-~~~~~~~~l~~~~~~pvlg-~IP~~~~  217 (233)
                      ..++.+.      +.+++. .+|+|+++ ++.. ...+..+++.+  ++|++. .||.+..
T Consensus       125 ~~~~~v~~~~~~~~~~l~~-~iv~~~~~-~~~~~~~~~~~~~~~~--~~~vl~t~I~~r~~  181 (231)
T PRK13849        125 STYRYVIELLLSENLAIPT-AILRQRVP-VGRLTTSQRAMSDMLE--SLPVVDSPMHERDA  181 (231)
T ss_pred             HHHHHHHHHHHHhCCCCCe-EEEEEecc-cccCCHHHHHHHHHHh--cCCCCCccccchHH
Confidence            4433322      456664 49999996 4321 22222333332  566773 4666553

>PRK13234 nifH nitrogenase reductase; Reviewed

Probab=99.84  E-value=2.9e-20  Score=155.78  Aligned_cols=198  Identities=14%  Similarity=0.036  Sum_probs=109.9

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCC--CCCcc-chH-HHHHHHHhCC-Ccccc---
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNK--NKIWF-NED-VNLLNKYSNS-LYEFT---   76 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~--~~~l~-~~d-~~~~~~~~~~-~~~~~---   76 (233)
                      +|++|+|. .||||||||++.|||.+|+++|+||+++|   .+++....  ..+.. ... .+.+...... ..+..   
T Consensus         3 ~~~~iai~-~KGGvGKTt~~~nLa~~la~~g~kVLliD---~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   78 (295)
T PRK13234          3 KLRQIAFY-GKGGIGKSTTSQNTLAALVEMGQKILIVG---CDPKADSTRLILNAKAQDTVLSLAAEAGSVEDLELEDVM   78 (295)
T ss_pred             cceEEEEE-CCCCccHHHHHHHHHHHHHHCCCeEEEEe---cccccccccccccCCCCCcHHHHHHhcCCcccccHHHHh
Confidence            47899997 99999999999999999999999999998   33332110  00000 011 1112110000 00110   


Q ss_pred             ----cceeeeeecCCCChhhhhhhcCCCCCHHHHH-HHHHHhh--cCCCeEEEeccCcccCccCCCCchHHHHHHhCCCE
Q psy14904         77 ----KLINPYLFKYPISPYTSSNLENRIINTSHII-NCYNYLS--NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPI  149 (233)
Q Consensus        77 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~l~--~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~v  149 (233)
                          .++.-  .  |.+..... . +.......+. +.++++.  ++||||||||++++..   ..+. +.++......+
T Consensus        79 ~~~~~gl~l--i--pa~~~~~~-~-~~~~~~~~l~~~~l~~~~~~~~yD~IlID~~~~~~~---nal~-~~~~~~aAD~v  148 (295)
T PRK13234         79 KIGYKGIKC--V--ESGGPEPG-V-GCAGRGVITSINFLEENGAYDDVDYVSYDVLGDVVC---GGFA-MPIRENKAQEI  148 (295)
T ss_pred             eecCCCeEE--E--ECCCCCCC-C-CCCcceeeeHHHHHHHcCCCccCCEEEEEcCCCceE---CCCc-cccccccCceE
Confidence                11111  1  11100000 0 0000012233 3555543  7899999999654321   1111 11110112368


Q ss_pred             EEEEcCCCCcHHHHHHHH---HHHH-hCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCC
Q psy14904        150 ILVIDLKIGCINNALLSL---EAIN-SRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLN  219 (233)
Q Consensus       150 llV~~~~~~~~~~~~~~~---~~l~-~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~  219 (233)
                      |+++.++..++..+...+   +..+ +.++++.|+|+|+.+ .  ....+..+.+++.++.++++.||++..+.
T Consensus       149 IIPv~pe~~Sl~gl~~l~~~i~~~~~~~~l~~~gIV~N~~r-t--~~~~~~~e~l~e~~g~~ll~~Ip~d~~V~  219 (295)
T PRK13234        149 YIVMSGEMMALYAANNIAKGILKYANSGGVRLGGLICNERQ-T--DRELELAEALAARLGSKLIHFVPRDNIVQ  219 (295)
T ss_pred             EEecCccHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCC-C--chHHHHHHHHHHHhCCceEEECCCchHHH
Confidence            889998877665544433   3332 456889999999765 2  23345677888888999999999988655

>PRK13236 nitrogenase reductase; Reviewed

Probab=99.84  E-value=4.6e-20  Score=154.68  Aligned_cols=201  Identities=15%  Similarity=0.085  Sum_probs=110.6

Q ss_pred             CCCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccc-hHH-HHHHHH--hCCCcccc
Q psy14904          1 MINKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFN-EDV-NLLNKY--SNSLYEFT   76 (233)
Q Consensus         1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~-~d~-~~~~~~--~~~~~~~~   76 (233)
                      |-+++|++|++ +.||||||||+++|||.+|+++|+||+++|.+.++... +...+... ... +++...  .+ +.++.
T Consensus         1 ~~~~~~~~~~~-~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~~~~-~~l~~~~~~~tl~d~~~~~~~~~-~~~l~   77 (296)
T PRK13236          1 MTDENIRQIAF-YGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADST-RLMLHSKAQTTVLHLAAERGAVE-DLELH   77 (296)
T ss_pred             CCCcCceEEEE-ECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCCCcc-chhccCCCCCCHHHHHHhcCCcc-CCCHH
Confidence            66788999999 55999999999999999999999999999832222111 00011110 011 111110  01 00110


Q ss_pred             -------cceeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhh-----cCCCeEEEeccCcccCccCCCCchHHHHHH
Q psy14904         77 -------KLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLS-----NLTDVIILEGIGGFSVPFHDNENSADLAEK  144 (233)
Q Consensus        77 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-----~~~D~vlID~~~g~~~p~~~~~~~~~l~~~  144 (233)
                             .++.-.    |.+..... . +. ...+.+. .++.+.     ++||||+|||++.+..+..  .....+.+ 
T Consensus        78 ~~i~~~~~gv~ll----pa~~~~~~-~-~~-~~~~~~~-~l~~~~~~~~~~~yD~vliD~~~~~~~~~~--~~~~~l~a-  146 (296)
T PRK13236         78 EVMLTGFRGVKCV----ESGGPEPG-V-GC-AGRGIIT-AINFLEENGAYQDLDFVSYDVLGDVVCGGF--AMPIREGK-  146 (296)
T ss_pred             HhheeCCCCeEEE----ECCCCCCC-C-CC-cceeehh-hhHHHHhcCccccCCEEEEeccccceeccc--cccchhcc-
Confidence                   111111    11100000 0 00 0011111 233333     5899999999754322111  10010111 


Q ss_pred             hCCCEEEEEcCCCCcHHHHHHH---H-HHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCC
Q psy14904        145 LGLPIILVIDLKIGCINNALLS---L-EAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLN  219 (233)
Q Consensus       145 ~~~~vllV~~~~~~~~~~~~~~---~-~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~  219 (233)
                       ...+++|+.++..++..+...   + +..++.++++.|+|+||.+ ..  ......+.+++.++.+++++||++..+.
T Consensus       147 -AD~vIIvttpe~~sl~g~~~~~~~l~k~~~~~~l~i~gIv~Nr~~-~~--~~~~ile~l~~~~g~~vl~~Ip~~~~v~  221 (296)
T PRK13236        147 -AQEIYIVTSGEMMAMYAANNIARGILKYAHTGGVRLGGLICNSRN-VD--REIELIETLAKRLNTQMIHFVPRDNIVQ  221 (296)
T ss_pred             -CCEEEEecCcchHHHHHHHHHHHHHHHHhhCCCceeEEEEecCCC-Cc--chHHHHHHHHHHhCccceeeCCCChHHH
Confidence             136899999988777554322   2 2334678999999999865 21  1124567888888999999999996544

>TIGR02016 BchX chlorophyllide reductase iron protein subunit X

Probab=99.83  E-value=1.3e-19  Score=151.63  Aligned_cols=198  Identities=13%  Similarity=0.093  Sum_probs=106.1

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCC--CCCccc-hHH-HHHHHH--hCCCccccccee
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNK--NKIWFN-EDV-NLLNKY--SNSLYEFTKLIN   80 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~--~~~l~~-~d~-~~~~~~--~~~~~~~~~~~~   80 (233)
                      ++|+|+ .||||||||+|+|||.+|+++|+||+++|   .+++....  ..+... ... +.+...  .+....+.+.+.
T Consensus         1 ~vIav~-gKGGvGKTT~a~nLA~~La~~g~rVLlID---~Dpq~~~~~~l~g~~~~~~l~dv~~~~~~~~~~~~~~~vi~   76 (296)
T TIGR02016         1 RIIAIY-GKGGSGKSFTTTNLSHMMAEMGKRVLQLG---CDPKHDSTSLLFGGISLPTIIEVATEKKLAGEEVKVGDVCF   76 (296)
T ss_pred             CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEE---ecCCCCccchhccCCCCCCHHHHHHhhccccCCCCHHHhee
Confidence            578999 69999999999999999999999999998   33332110  000000 011 111100  000001100111


Q ss_pred             eeeec-CCCChhhhhhhcCCCC-------CHHHHHHHHHHh---hcCCCeEEEeccCcccCc-cCCCCchHHHHHHhCCC
Q psy14904         81 PYLFK-YPISPYTSSNLENRII-------NTSHIINCYNYL---SNLTDVIILEGIGGFSVP-FHDNENSADLAEKLGLP  148 (233)
Q Consensus        81 ~~~~~-~~~~~~~~~~~~~~~~-------~~~~l~~~~~~l---~~~~D~vlID~~~g~~~p-~~~~~~~~~l~~~~~~~  148 (233)
                      ...+. .+.... ..+......       ......+.++.+   ..+||||||||++.+.++ ..  ...+..   ....
T Consensus        77 ~~~~~~~~~~~~-~~e~~~~~~~~gc~~~~~~~~~~~l~~l~~~~~~yD~IliD~~~~~~~~g~~--~~~a~~---~Ad~  150 (296)
T TIGR02016        77 KTTIMNGSGGVY-GMELGGPEVGRGCGGRGIIHGFDLLEKLGFHDWDFDFVLMDFLGDVVCGGFA--TPLARS---LAEE  150 (296)
T ss_pred             eccccCcCCCcc-eeecCCCCcccccCcchhhHHHHHHHHhhhhcccCCEEEEecCCCccccccc--cchhhh---hCCe
Confidence            10000 000000 000100000       000112444443   368999999997654211 11  111111   1236


Q ss_pred             EEEEEcCCCCcH---HHHHHHHHHHHhC--CCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCCh
Q psy14904        149 IILVIDLKIGCI---NNALLSLEAINSR--GLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNI  220 (233)
Q Consensus       149 vllV~~~~~~~~---~~~~~~~~~l~~~--~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~  220 (233)
                      +++|++++..++   +++...++.+++.  +++++|+|+||+. ..     ...+.+.+.+++|+++.||+++.+..
T Consensus       151 viVvt~~e~~sl~~a~~l~k~v~~~~~~~~~v~i~GVV~N~~~-~~-----~~~~~~~~~~~i~vLg~IP~d~~i~~  221 (296)
T TIGR02016       151 VIVIGSNDRQSLYVANNICNAVEYFRKLGGRVGLLGLVVNRDD-GS-----GEAQAFAREVGIPVLAAIPADEELRR  221 (296)
T ss_pred             EEEEecchHHHHHHHHHHHHHHHHHHHcCCCCcceEEEEeCCC-Cc-----cHHHHHHHHcCCCeEEECCCCHHHHH
Confidence            888888876555   4455566666554  4789999999997 32     12344556689999999999998764

This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.

>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein

Probab=99.83  E-value=9.1e-20  Score=151.00  Aligned_cols=190  Identities=13%  Similarity=0.110  Sum_probs=103.0

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCcc---chHH-HHHHHH--hCCCcccc-----
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWF---NEDV-NLLNKY--SNSLYEFT-----   76 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~---~~d~-~~~~~~--~~~~~~~~-----   76 (233)
                      +|+|. +||||||||+|+|||.+|+++|+||+++|   .+++... ...+.   .... +.+...  ........     
T Consensus         2 ~i~~~-gKGGVGKTT~~~nLA~~La~~g~rVLliD---~D~q~~~-~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~   76 (268)
T TIGR01281         2 ILAVY-GKGGIGKSTTSSNLSVAFAKLGKRVLQIG---CDPKHDS-TFTLTGRLIPTVIDVLQAVNYHYEDVRPEDVIYT   76 (268)
T ss_pred             EEEEE-cCCcCcHHHHHHHHHHHHHhCCCeEEEEe---cCccccc-cceecCCCCCcHHHHHHhccccccCCCHHHeeEe
Confidence            47888 69999999999999999999999999998   3333210 00110   0111 111100  00000000     


Q ss_pred             --cceeeeeecCCCChhhh-hhhcCCCCCHHHHHHHHH--HhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEE
Q psy14904         77 --KLINPYLFKYPISPYTS-SNLENRIINTSHIINCYN--YLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIIL  151 (233)
Q Consensus        77 --~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~--~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vll  151 (233)
                        ++++-.    |....+. .+.+..  ........++  .+.++||||||||++++..+..   ..+ +..  ...+++
T Consensus        77 ~~~~l~~i----~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~yD~ViID~~~~~~~~~~---~~~-l~a--AD~vli  144 (268)
T TIGR01281        77 GYGGVDCV----EAGGPPAGSGCGGY--VVGETVKLLKEHHILDDYDVILFDVLGDVVCGGF---ATP-LQY--ADYALV  144 (268)
T ss_pred             CCCCeEEE----ecCCCCCCCcccce--ehhhhHHHhhhccccccCCEEEEecCCccccCcc---ccc-hhh--cCEEEE
Confidence              111111    1111010 000000  0011112222  2456899999999876543211   111 111  125777


Q ss_pred             EEcCCCCcHHHHHHHHHHHH----hCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCCh
Q psy14904        152 VIDLKIGCINNALLSLEAIN----SRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNI  220 (233)
Q Consensus       152 V~~~~~~~~~~~~~~~~~l~----~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~  220 (233)
                      ++.++..++..+...++.++    +.++++.|+|+||++ ++     +..+.+++.++.|+++.||++..+..
T Consensus       145 p~~~~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~-~~-----~~~~~~~~~~~~~vl~~I~~~~~v~~  211 (268)
T TIGR01281       145 VAANDFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSD-AT-----DLIERFNERVGMPVLGVVPDLEVIRR  211 (268)
T ss_pred             EecCchhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCC-hH-----HHHHHHHHHcCCCEEEEcCCChHHHH
Confidence            88877666655444444332    457889999999998 43     34566666789999999999886553

The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.

>CHL00072 chlL photochlorophyllide reductase subunit L

Probab=99.83  E-value=7.5e-20  Score=152.79  Aligned_cols=197  Identities=15%  Similarity=0.168  Sum_probs=105.1

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCC--CCCCccchHH-HHHHH--HhCCCccccccee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNN--KNKIWFNEDV-NLLNK--YSNSLYEFTKLIN   80 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~--~~~~l~~~d~-~~~~~--~~~~~~~~~~~~~   80 (233)
                      || |+|+| ||||||||+|.|||.+|+++|+||+++|   .+++...  ...+...... ..+..  ....+.+..+.+.
T Consensus         1 m~-ia~~g-KGGVGKTTta~nLA~~La~~G~rVLlID---~DpQ~n~t~~l~g~~~~~i~~~~~~~~~~~~~~~~~~~i~   75 (290)
T CHL00072          1 MK-LAVYG-KGGIGKSTTSCNISIALARRGKKVLQIG---CDPKHDSTFTLTGFLIPTIIDTLQSKDYHYEDVWPEDVIY   75 (290)
T ss_pred             Ce-EEEEC-CCCCcHHHHHHHHHHHHHHCCCeEEEEe---ccCCCcccccccCcCCCCHHHHHhhcccccccCChhheEE
Confidence            45 88999 8999999999999999999999999998   3333211  0001111111 11110  0000000101111


Q ss_pred             ee---eecCCCChhhh-hhhcCC-CCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcC
Q psy14904         81 PY---LFKYPISPYTS-SNLENR-IINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDL  155 (233)
Q Consensus        81 ~~---~~~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~  155 (233)
                      +.   ..-.|....+. .+.+.. ......+.+.++++ ++||||||||++++..+   .+ .+.+..  ...+++++.+
T Consensus        76 ~~~~~l~lip~~~~~~~~~~~~~~~~~~~~ll~~l~~~-~~yD~IiIDt~~~l~~~---a~-~aal~~--AD~viIp~~p  148 (290)
T CHL00072         76 KGYGGVDCVEAGGPPAGAGCGGYVVGETVKLLKELNAF-YEYDIILFDVLGDVVCG---GF-AAPLNY--ADYCIIITDN  148 (290)
T ss_pred             eCCCCeEEEeCCCCCCccchhhcccHHHHHHHHHhhcc-ccCCEEEEecCCcceec---hh-hhhhhc--CCEEEEEecC
Confidence            00   00011111110 000000 00112233334332 47999999998765321   11 111111  1357888888


Q ss_pred             CCCcHHHHHHHHHHHH----hCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCCh
Q psy14904        156 KIGCINNALLSLEAIN----SRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNI  220 (233)
Q Consensus       156 ~~~~~~~~~~~~~~l~----~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~  220 (233)
                      +..++..+...++.++    +.++++.|+|+||++ .+     ...+.+.+.++.++++.||++..+..
T Consensus       149 ~~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~-~~-----~~~~~~~~~~~~~vl~~Ip~~~~v~~  211 (290)
T CHL00072        149 GFDALFAANRIAASVREKARTHPLRLAGLVGNRTS-KR-----DLIDKYVEACPMPVLEVLPLIEDIRV  211 (290)
T ss_pred             CHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCC-ch-----hHHHHHHHHcCCceEEECCCChHHHH
Confidence            8766655444443332    356788999999997 42     23444566789999999998886653

>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases

Probab=99.83  E-value=5.5e-20  Score=144.87  Aligned_cols=183  Identities=21%  Similarity=0.231  Sum_probs=105.7

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHH---HHhCCCcccccceeeeeec
Q psy14904          9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLN---KYSNSLYEFTKLINPYLFK   85 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~---~~~~~~~~~~~~~~~~~~~   85 (233)
                      |+|+|+|||+||||+|++||.+|+++|++|+++|   ++++..         ...++.   .......   ..... ...
T Consensus         1 I~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD---~D~~~~---------~~~~~~~~~~~~~~~~---~~~~~-~~~   64 (195)
T PF01656_consen    1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLID---LDPQAP---------NLSILFGVYDILREGL---ENANA-ILK   64 (195)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE---ESTTSH---------HHHHHTTCHHHHTTSS---HGHHC-HHE
T ss_pred             CEEEcCCCCccHHHHHHHHHhccccccccccccc---cCcccc---------cHHHHhcchhhccccc---eehhh-hhh
Confidence            7899999999999999999999999999999999   555431         111111   0000000   00000 000


Q ss_pred             CCCChhhhhhhcCCCCCHHHHHHHHHHhhc-CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHH
Q psy14904         86 YPISPYTSSNLENRIINTSHIINCYNYLSN-LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNAL  164 (233)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~  164 (233)
                      . ........ .........+++.++.+.+ .||+||||||+++..+       ...+.....-+++++.++..++..+.
T Consensus        65 ~-~~~~~~~~-~~~~~~~~~l~~~l~~l~~~~yD~iiiD~~~~~~~~-------~~~~l~~ad~viv~~~~~~~~i~~~~  135 (195)
T PF01656_consen   65 N-FESQDIYQ-GEEYLDPELLREILESLIKSDYDYIIIDTPPGLSDP-------VRNALAAADYVIVPIEPDPSSIEGAE  135 (195)
T ss_dssp             S-CCHHHHHH-HCHCHHHHHHHHHHHHHHHTTSSEEEEEECSSSSHH-------HHHHHHTSSEEEEEEESSHHHHHHHH
T ss_pred             c-cchhhhhh-hhhhhHHHHHHHHHHHhhhccccceeecccccccHH-------HHHHHHhCceeeeecCCcHHHHHHHH
Confidence            0 00000000 0000223567888888654 4999999999887532       22222233468888888876777777


Q ss_pred             HHHHHHHhCC--CcEEEEEEcccCCCc-hhhhhhhHHHHHhhcC-CCce-EecCCCCC
Q psy14904        165 LSLEAINSRG--LKLIGWVANHTQIVD-TLFANENYIELTKYLN-VTPL-GRIPYLYN  217 (233)
Q Consensus       165 ~~~~~l~~~~--~~i~GiVlN~~~~~~-~~~~~~~~~~l~~~~~-~pvl-g~IP~~~~  217 (233)
                      ..++.+++.+  .++.|+|+||++ ++ ....+...+..++... ..++ +.||++..
T Consensus       136 ~~~~~l~~~~~~~~~~~vv~N~v~-~~~~~~~~~~~~~~~~~~~~~~vl~~~Ip~~~~  192 (195)
T PF01656_consen  136 RLIELLKRLGKKLKIIGVVINRVD-PGNESKLQEEIEEIERELYVPVVLPGVIPYSEA  192 (195)
T ss_dssp             HHHHHHHHHTHTEEEEEEEEEEET-SCCHHHHHHHHHHHHHHCECCCBESEEEE--HH
T ss_pred             HHHHHHHHhccccceEEEEEeeeC-CCccchHHHHHHHHHHHhCCCcCcCCcCCCCCC
Confidence            7777777555  568999999997 43 2223333333333333 3355 67988754

These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....

>TIGR01287 nifH nitrogenase iron protein

Probab=99.83  E-value=1.7e-19  Score=149.88  Aligned_cols=203  Identities=14%  Similarity=0.088  Sum_probs=107.4

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCC--CCCcc-chH-HHHHHHHhCCCcccccceeee
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNK--NKIWF-NED-VNLLNKYSNSLYEFTKLINPY   82 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~--~~~l~-~~d-~~~~~~~~~~~~~~~~~~~~~   82 (233)
                      ++|+|.| ||||||||+|.|||.+|+++|+||+++|   .+++....  ..+.. ... .+.+.....-..+..+.+...
T Consensus         1 ~~ia~~g-KGGVGKTT~a~nLA~~La~~G~~VlliD---~D~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~   76 (275)
T TIGR01287         1 RQIAIYG-KGGIGKSTTTQNIAAALAEMGKKVMIVG---CDPKADSTRLLLGGKAQPTVLDVLREKGAEDLELEDVIKEG   76 (275)
T ss_pred             CeeEEeC-CCcCcHHHHHHHHHHHHHHCCCeEEEEe---CCCCCCccccccCCCCCCCHHHHHhhcCCCCCCHHHeeeeC
Confidence            4789986 9999999999999999999999999998   33332110  00000 001 111111000000110001000


Q ss_pred             ---eecCCCChhhh-hhhcCCC-CCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCC
Q psy14904         83 ---LFKYPISPYTS-SNLENRI-INTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKI  157 (233)
Q Consensus        83 ---~~~~~~~~~~~-~~~~~~~-~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~  157 (233)
                         ..-.|...... ....+.. .....+.+.+..+.++||||||||++.+...   .+. ..++......+++++.++.
T Consensus        77 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~yD~iiIDt~~~~~~~---~~~-~~~~~~aAD~viip~~p~~  152 (275)
T TIGR01287        77 FGGIRCVESGGPEPGVGCAGRGVITAINLLEELGAYEDDLDFVFYDVLGDVVCG---GFA-MPIREGKAQEIYIVTSGEM  152 (275)
T ss_pred             CCCEEEEeCCCCCccCCCccchhhhHHHHHHHhhhhhccCCEEEEeccCcceec---cee-eccccccccEEEEEecchH
Confidence               00001110000 0000000 0011234456667789999999997654210   110 0010011136888888887


Q ss_pred             CcHHHHHHH---HHHHH-hCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCCh
Q psy14904        158 GCINNALLS---LEAIN-SRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNI  220 (233)
Q Consensus       158 ~~~~~~~~~---~~~l~-~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~  220 (233)
                      .++..+...   ++.++ +.+.++.|+|.|+.+ .  ....+..+.+++.++.++++.||++..+..
T Consensus       153 ~sl~~~~~l~~~i~~~~~~~~~~~~giv~n~~~-~--~~~~~~~e~l~~~~~~~vl~~Ip~~~~v~~  216 (275)
T TIGR01287       153 MALYAANNICKGILKYAKSGGVRLGGLICNSRN-V--DDEKELIDEFAKKLGTQLIHFVPRSNIVQK  216 (275)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCeeeEEEEcCCC-C--chHHHHHHHHHHHhCCceEEECCCChHHHH
Confidence            666554333   33332 457788899988754 2  233455677777889999999999986653

This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.

>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon

Probab=99.83  E-value=6.9e-19  Score=141.60  Aligned_cols=195  Identities=12%  Similarity=0.096  Sum_probs=115.3

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCC-CCCCcc-chHHHHHHHHhCCCccc-------c
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNN-KNKIWF-NEDVNLLNKYSNSLYEF-------T   76 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~-~~~~l~-~~d~~~~~~~~~~~~~~-------~   76 (233)
                      ||+|+|.|.||||||||+|+|||.+|++.|++|+++|   .+++..- ..-++. +..-.|.+..... .++       .
T Consensus         1 M~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID---~dpqN~Lrlhfg~~~~~~~G~a~a~l~~-~~W~~~~~~~~   76 (243)
T PF06564_consen    1 MKVIAIVSPKGGVGKTTLTANLAWALARLGESVLAID---LDPQNLLRLHFGLPLDDRDGWARALLDG-ADWQQAAYRYS   76 (243)
T ss_pred             CcEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEe---CCcHHHHHHhcCCCCcccccHHHHHhCC-CCHHHHhhccC
Confidence            7899999999999999999999999999999999999   4433210 000000 0011112211110 011       0


Q ss_pred             cceeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhh--cCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEc
Q psy14904         77 KLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLS--NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVID  154 (233)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~--~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~  154 (233)
                      +.+...+|.. .+..-....+........+.+.+.++.  ..||+||||+|+|.. |..      .-+....+-++.|+.
T Consensus        77 ~g~~~LPfG~-l~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~~~iliD~P~g~~-~~~------~~al~~aD~vL~V~~  148 (243)
T PF06564_consen   77 DGVDFLPFGQ-LTEAEREAFEQLAQDPQWLARALAALKALGPYDWILIDTPPGPS-PYT------RQALAAADLVLVVVN  148 (243)
T ss_pred             CCCEEEcCCC-CCHHHHHHHHHhhcCHHHHHHHHHHHhccCCCCEEEEeCCCCCc-HHH------HHHHHhCCeEEEEeC
Confidence            2222223322 111111111112234567888888888  789999999998864 221      112222236888888


Q ss_pred             CCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCC
Q psy14904        155 LKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLN  219 (233)
Q Consensus       155 ~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~  219 (233)
                      ++..+..  ....+.+ ..+   ..+|+|+++ +.+...++....+++..+-.+-+.|.+|+.+.
T Consensus       149 ~Da~s~~--~L~q~~l-~~~---~~~liNq~~-~~s~l~~D~~~~~~~~l~~llp~~IHrDeAv~  206 (243)
T PF06564_consen  149 PDAASHA--RLHQRAL-PAG---HRFLINQYD-PASQLQRDLLQVWRQSLGRLLPGVIHRDEAVA  206 (243)
T ss_pred             CCHHHHH--HHHHhcc-cCC---cEEEEeccC-ccchHHHHHHHHHHHhhccccceeeecchHHH
Confidence            8854432  2222221 222   478999999 87777778888778776654446898888665

It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>PRK10037 cell division protein; Provisional

Probab=99.83  E-value=3.1e-19  Score=146.39  Aligned_cols=195  Identities=12%  Similarity=0.039  Sum_probs=102.3

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCC-CCCCccc-hHHHHHHHHhCCCcccccceee--
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNN-KNKIWFN-EDVNLLNKYSNSLYEFTKLINP--   81 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~-~~~~l~~-~d~~~~~~~~~~~~~~~~~~~~--   81 (233)
                      |++|+|+|+||||||||+|.|||.+|+++|+||+++|   .+++..- ...|+.. ....+.....+. .++.+.+..  
T Consensus         1 ~~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID---~D~q~~~s~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~   76 (250)
T PRK10037          1 MAILGLQGVRGGVGTTSITAALAWSLQMLGENVLVID---ACPDNLLRLSFNVDFTHRQGWARALLDG-QDWRDAGLRYT   76 (250)
T ss_pred             CcEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEe---CChhhhHHHHhCCCccccchHHHHHhcC-CCchhhhcccc
Confidence            6799999999999999999999999999999999998   3333210 0001100 001111111111 011000000  


Q ss_pred             -eeecCCCChhhhhhhcCC---CCCHHHHHHHHHHhh--cCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcC
Q psy14904         82 -YLFKYPISPYTSSNLENR---IINTSHIINCYNYLS--NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDL  155 (233)
Q Consensus        82 -~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~l~--~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~  155 (233)
                       ...-.|.......+.+..   ......+.+.+++++  ++||||||||||++..     .....+ . ....+++++.+
T Consensus        77 ~~l~iip~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yD~iiIDtpp~~~~-----~~~~al-~-aaD~vlvpv~~  149 (250)
T PRK10037         77 SQLDLLPFGQLSIEEQENPQHWQTRLGDICSALQQLKASGRYQWILLDLPRGASP-----LTRQLL-S-LCDHSLAIVNV  149 (250)
T ss_pred             CCeEEEcCCCCCHHHHHHHHHHHHhHHHHHHHHHHhcccCCCCEEEEECCCCccH-----HHHHHH-H-hCCEEEEEcCc
Confidence             000011110000000000   001234778888887  8999999999988642     112222 2 22467888877


Q ss_pred             CCCcHHHHHHHHHHHHhC-CCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceE-ecCCCCCCCh
Q psy14904        156 KIGCINNALLSLEAINSR-GLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLG-RIPYLYNLNI  220 (233)
Q Consensus       156 ~~~~~~~~~~~~~~l~~~-~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg-~IP~~~~l~~  220 (233)
                      +..+      .++..+.. +.+ ..+++|+++ +.....++..+.+.+. +.+++. .||++..+..
T Consensus       150 ~~~~------~i~~~~~~~~~~-~~i~~n~~~-~~~~~~~~~~~~~~~~-~~~~l~~~I~~~~~~~~  207 (250)
T PRK10037        150 DANC------HIRLHQQALPAG-AHILINDLR-IGSQLQDDLYQLWLQS-QRRLLPMLIHRDEAMAE  207 (250)
T ss_pred             CHHH------HHhhhccccCCC-eEEEEecCC-cccHHHHHHHHHHHHh-cccccCccccCchhHHH
Confidence            6322      22333221 223 567889987 5443334444444332 567774 5888876553

>PRK13231 nitrogenase reductase-like protein; Reviewed

Probab=99.83  E-value=1.6e-19  Score=149.20  Aligned_cols=198  Identities=15%  Similarity=0.083  Sum_probs=113.0

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCC--CCCccchHHHHHHHHhCC-Cccc-------
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNK--NKIWFNEDVNLLNKYSNS-LYEF-------   75 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~--~~~l~~~d~~~~~~~~~~-~~~~-------   75 (233)
                      ||+|+|. .||||||||+|.|||.+|+++| ||+++|   .+++....  ..+.....  ......+. ....       
T Consensus         2 ~~~iav~-~KGGvGKTT~a~nLA~~La~~G-rVLliD---~Dpq~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~   74 (264)
T PRK13231          2 MKKIAIY-GKGGIGKSTTVSNMAAAYSNDH-RVLVIG---CDPKADTTRTLCGKRIPT--VLDTLKDNRKPELEDIIHEG   74 (264)
T ss_pred             ceEEEEE-CCCCCcHHHHHHHHhcccCCCC-EEEEEe---EccCcccchhhhcCCccH--HHHHHhhcCCCChhHhheeC
Confidence            6899999 5999999999999999999999 999998   33332100  00101011  01111110 0000       


Q ss_pred             ccceeeeeecCCCChhhhhhhcCCC-CCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEc
Q psy14904         76 TKLINPYLFKYPISPYTSSNLENRI-INTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVID  154 (233)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~  154 (233)
                      .+++......... +..  ...+.. ....++.+.++++.++||||||||++++..   ..+... .+......+++++.
T Consensus        75 ~~~l~~i~~~~~~-~~~--~~~~~~~~~~~~~~~~l~~l~~~yD~ViIDt~~~~~~---~~~~~~-~~~~aaD~vlip~~  147 (264)
T PRK13231         75 FNGILCVESGGPE-PGV--GCAGRGVIVAMNLLENLGVFDEDIDVVIYDVLGDVVC---GGFSVP-LREDYADEVYIVTS  147 (264)
T ss_pred             CCCeEEEEcCCCC-CCC--CCcCceeeehhhhHHhhccccCCCCEEEEecCCCceE---cccccc-ccccccceeEEEec
Confidence            0111111110000 000  000111 111235667777888999999999765421   011100 00011236888889


Q ss_pred             CCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCCh
Q psy14904        155 LKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNI  220 (233)
Q Consensus       155 ~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~  220 (233)
                      ++..++..+...++.++..+.++.|+|.|+++ ..  ...+..+.+.+.++.++++.||++..+..
T Consensus       148 p~~~si~~~~~~~~~i~~~~~~~~~vv~~~~~-~~--~~~~~~~~l~~~~~~~vl~~I~~~~~v~~  210 (264)
T PRK13231        148 GEYMSLYAANNIARGIKKLKGKLGGIICNCRG-ID--NEVEIVSEFASRIGSRIIGVIPRSNLVQE  210 (264)
T ss_pred             CchhHHHHHHHHHHHHHHcCCcceEEEEcCCC-Cc--cHHHHHHHHHHHhCCCeEEeCCCCHHHHH
Confidence            88878877777777776655567888888775 22  23455677777789899999999876653

>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase

Probab=99.82  E-value=7.6e-19  Score=140.14  Aligned_cols=163  Identities=15%  Similarity=0.147  Sum_probs=100.9

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHHH-cCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCc-ccc-----
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFKK-RGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLY-EFT-----   76 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~-~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~-----   76 (233)
                      +++++|+|+|.|||+||||++.|||.+|++ .|+||+++|...+++.... .-++... .. +..+..... .+.     
T Consensus        33 ~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~~~~~-~~~~~~~-~~-l~~~l~~~~~~l~~~i~~  109 (207)
T TIGR03018        33 KNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHR-TLGLEAE-PG-LSDCLLDPVLDLADVLVP  109 (207)
T ss_pred             CCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCChhhhh-eeCCCCC-CC-HHHHHcCCCCCHHHHhcc
Confidence            468999999999999999999999999997 6999999993322111000 0011100 00 111110000 000     


Q ss_pred             ---cceeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCC--CeEEEeccCcccCccCCCCchHHHHHHhCCCEEE
Q psy14904         77 ---KLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLT--DVIILEGIGGFSVPFHDNENSADLAEKLGLPIIL  151 (233)
Q Consensus        77 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~--D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vll  151 (233)
                         +++.  ..  |.+.......  .....+++.+.+++++++|  ||||||||+++..+     ....++... +.+++
T Consensus       110 ~~~~~l~--vl--~~g~~~~~~~--~~~~~~~l~~~l~~l~~~y~~D~IiiD~pp~~~~~-----~~~~l~~~a-D~vii  177 (207)
T TIGR03018       110 TNIGRLS--LL--PAGRRHPNPT--ELLASQRMRSLLHELARRYPDRIIIIDTPPLLVFS-----EARALARLV-GQIVL  177 (207)
T ss_pred             CCCCCEE--EE--eCCCCCCCHH--HHhCcHHHHHHHHHHHhhCCCCEEEEECCCCcchh-----HHHHHHHhC-CEEEE
Confidence               1111  11  1111100000  0012367888999999888  99999999876421     123333333 47999


Q ss_pred             EEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEc
Q psy14904        152 VIDLKIGCINNALLSLEAINSRGLKLIGWVAN  183 (233)
Q Consensus       152 V~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN  183 (233)
                      |+..+..+...+...++.++  +.+++|+|+|
T Consensus       178 V~~~~~~~~~~~~~~~~~l~--~~~~~G~v~N  207 (207)
T TIGR03018       178 VVEEGRTTQEAVKEALSALE--SCKVLGVVLN  207 (207)
T ss_pred             EEECCCCCHHHHHHHHHHhc--CCCeEEEEeC
Confidence            99999988888888888887  6799999998

Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.

>PHA02519 plasmid partition protein SopA; Reviewed

Probab=99.82  E-value=2e-19  Score=155.46  Aligned_cols=205  Identities=10%  Similarity=-0.003  Sum_probs=113.4

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEee-eecCcccCCCCCCccc-----hHHHHHHHHhCCCccccc
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKP-IASGAYLNNKNKIWFN-----EDVNLLNKYSNSLYEFTK   77 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp-~~~~~~~~~~~~~l~~-----~d~~~~~~~~~~~~~~~~   77 (233)
                      +++++|+|+|+||||||||+|+|||.+|+++|+||+++|. +.++.-..  ..|+.+     .+........+.......
T Consensus       104 ~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlIDl~DpQ~nlt~--~~g~~~~~~~~~~~tl~~~~~~~~~~~~~  181 (387)
T PHA02519        104 KNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDPQGTASM--YHGYVPDLHIHADDTLLPFYLGERDNAEY  181 (387)
T ss_pred             CCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEeCCCCCCCccc--ccCcCccccccccccHHHHHhCCCcchHh
Confidence            3578999999999999999999999999999999999982 22211100  001100     000001111111000000


Q ss_pred             ceee----eeecCCCChhhhh---hh---cC-CC---CCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHH
Q psy14904         78 LINP----YLFKYPISPYTSS---NL---EN-RI---INTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAE  143 (233)
Q Consensus        78 ~~~~----~~~~~~~~~~~~~---~~---~~-~~---~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~  143 (233)
                      .+.+    ...-.|....+..   ..   .. ..   .....+.+.++++.++||+|||||||++..     ++...+++
T Consensus       182 ~i~~t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~L~~l~~~YD~IlID~pPslg~-----lt~nAL~A  256 (387)
T PHA02519        182 AIKPTCWPGLDIIPSCLALHRIETDLMQYHDAGKLPHPPHLMLRAAIESVWDNYDIIVIDSAPNLGT-----GTINVVCA  256 (387)
T ss_pred             heecCCCCCEEEEECChHHHHHHHHHHHhhhccccccCHHHHHHHHHHHhhccCCEEEEECCCCccH-----HHHHHHHH
Confidence            1111    0111123322211   00   00 00   113468888899999999999999988742     23344444


Q ss_pred             HhCCCEEEEEcCCCCcHHH---HHHHH----HHHHh--CCCcEEEEEEcccCCCch-hhhhhhHHHHHhhcCCCce-Eec
Q psy14904        144 KLGLPIILVIDLKIGCINN---ALLSL----EAINS--RGLKLIGWVANHTQIVDT-LFANENYIELTKYLNVTPL-GRI  212 (233)
Q Consensus       144 ~~~~~vllV~~~~~~~~~~---~~~~~----~~l~~--~~~~i~GiVlN~~~~~~~-~~~~~~~~~l~~~~~~pvl-g~I  212 (233)
                      +  ..+|+++.++..++..   +...+    +.++.  .+.. +.+++|+++ ++. ...+...+.+++.+|-.++ ..|
T Consensus       257 A--d~vliPv~~~~~s~~s~~~~~~~i~~~~~~~~~~~~~~~-l~il~t~~~-~~~~~~~~~i~~~l~~~~g~~vl~~~I  332 (387)
T PHA02519        257 A--DVIVVATPAELFDYVSVLQFFTMLLDLLATVDLGGFEPV-VRLLLTKYS-LTVGNQSRWMEEQIRNTWGSMVLRQVV  332 (387)
T ss_pred             h--CEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcccCCC-eEEEEeeEC-CCCchHHHHHHHHHHHHhccccccccC
Confidence            3  2467777766544332   22222    22221  1233 458999998 653 3444567889988888787 458


Q ss_pred             CCCCCCC
Q psy14904        213 PYLYNLN  219 (233)
Q Consensus       213 P~~~~l~  219 (233)
                      |....+.
T Consensus       333 ~~s~~i~  339 (387)
T PHA02519        333 RVTDEVG  339 (387)
T ss_pred             cCcchHh
Confidence            7765544

>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=99.82  E-value=2.5e-19  Score=147.60  Aligned_cols=204  Identities=15%  Similarity=0.103  Sum_probs=111.8

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHH-HcCCeeeEEeeeecCcccCCC-CCCccch-HHHHHHHHhCCCcc--cccce
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFK-KRGISCIGMKPIASGAYLNNK-NKIWFNE-DVNLLNKYSNSLYE--FTKLI   79 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~-~~G~~Vl~~dp~~~~~~~~~~-~~~l~~~-d~~~~~~~~~~~~~--~~~~~   79 (233)
                      +|++|+|+|+||||||||+|.|||.+|+ ++|+||+++|   .+++.... .-+.... +.....-..+....  .....
T Consensus         1 ~~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliD---lDpQ~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (259)
T COG1192           1 MMKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLID---LDPQGSLTSWLGLRPDLEGDLYNLLSGLKERPDILDYT   77 (259)
T ss_pred             CCEEEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEEEe---CCCcchhhHhcCCCcccchhHHHHHhcccccccchhcc
Confidence            5789999999999999999999999999 6679999998   44442110 0011101 00001111110000  00000


Q ss_pred             --eeeeecCCCChhhh--hhhcC-CCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEc
Q psy14904         80 --NPYLFKYPISPYTS--SNLEN-RIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVID  154 (233)
Q Consensus        80 --~~~~~~~~~~~~~~--~~~~~-~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~  154 (233)
                        .....-.|....++  .+.+. .......+++.++.+.++||||||||||++. ++    +...++++  .-+++.+.
T Consensus        78 ~~~~~ld~ips~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~yD~iiID~pp~l~-~l----~~nal~as--d~vlIP~~  150 (259)
T COG1192          78 VVIEGLDLIPSNIDLAEGAEIELNAVAKELLLKRLLDPVKDDYDYIIIDTPPSLG-VL----TLNALAAA--DHVLIPVQ  150 (259)
T ss_pred             cCCCCceEecCChHHHhHHHHHHhhhhHHHHHHHHhhhhccCCCEEEECCCCchh-HH----HHHHHHHc--CeeEEecC
Confidence              01111223222222  11111 1111234555555566799999999998873 22    23333332  24666666


Q ss_pred             CCCCcH---HHHHHHHHHHHhC---CCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce-EecCCCCCCC
Q psy14904        155 LKIGCI---NNALLSLEAINSR---GLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL-GRIPYLYNLN  219 (233)
Q Consensus       155 ~~~~~~---~~~~~~~~~l~~~---~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl-g~IP~~~~l~  219 (233)
                      .+.-++   ..++..+..+++.   .+.+.+++.|+++ ++.....+..+.+++.++.+++ ..||.+..+.
T Consensus       151 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  221 (259)
T COG1192         151 PEFLDLEGLEQLLNTLEDLLKLRRNKLIVVGILITRFD-SRTKLADEVLQELKQLLGDPVLKTKIPRRVAYR  221 (259)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeeceEc-CCcchHHHHHHHHHHHhccccccccCcccccHH
Confidence            664333   3344445444321   1477999999998 6555556677777777665655 4577776555

>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein

Probab=99.82  E-value=1.9e-18  Score=146.73  Aligned_cols=190  Identities=11%  Similarity=0.083  Sum_probs=118.2

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCccc-----CCCCCCccchHHH---------HHHHHh
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYL-----NNKNKIWFNEDVN---------LLNKYS   69 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~-----~~~~~~l~~~d~~---------~~~~~~   69 (233)
                      .++++|+|+|.|||+||||+|.|||.+|+++|++|+++|-..++...     .+..+++.-.+..         .+....
T Consensus        91 ~~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~l~~~~  170 (322)
T TIGR03815        91 ARGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLVDADPWGGGLDLLLGAEDVPGLRWPDLSQARGRLPAGALRDAL  170 (322)
T ss_pred             CCceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEEecCCCCCCeeeeecCCCCCCcCHHHHhhcCCCcCHHHHHHhC
Confidence            35799999999999999999999999999999999999832211110     0000111100110         000000


Q ss_pred             CCCcccccceeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCE
Q psy14904         70 NSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPI  149 (233)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~v  149 (233)
                        .. . +.+.  .+..+..  .     ......+.+.+.++.+++.|||||||||++... .     ........ ..+
T Consensus       171 --~~-~-~~l~--vl~~~~~--~-----~~~~~~~~l~~~l~~l~~~~D~VIID~p~~~~~-~-----~~~~L~~A-D~v  230 (322)
T TIGR03815       171 --PR-R-GGLS--VLSWGRA--V-----GAALPPAAVRAVLDAARRGGDLVVVDLPRRLTP-A-----AETALESA-DLV  230 (322)
T ss_pred             --CC-c-CCeE--EEecCCC--C-----cCCCCHHHHHHHHHHHHhcCCEEEEeCCCCCCH-H-----HHHHHHHC-CEE
Confidence              00 0 1111  1111100  0     112445678888999999999999999987532 1     22233333 368


Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCC
Q psy14904        150 ILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLN  219 (233)
Q Consensus       150 llV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~  219 (233)
                      ++|+..+..++..+...++.++..+.+ +++|+|+.. +.    ....+.+++.+|.|+++.||+++.+.
T Consensus       231 liV~~~~~~sl~~a~r~l~~l~~~~~~-~~lVv~~~~-~~----~~~~~~i~~~lg~~v~~~Ip~d~~v~  294 (322)
T TIGR03815       231 LVVVPADVRAVAAAARVCPELGRRNPD-LRLVVRGPA-PA----GLDPEEIAESLGLPLLGEVRDQRGLA  294 (322)
T ss_pred             EEEcCCcHHHHHHHHHHHHHHhhhCCC-eEEEEeCCC-CC----CCCHHHHHHHhCCCceeeCCCChhHH
Confidence            889988887777777777777655544 567788754 22    12346778888999999999988654

Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.

>PRK13705 plasmid-partitioning protein SopA; Provisional

Probab=99.81  E-value=6.2e-19  Score=152.62  Aligned_cols=204  Identities=11%  Similarity=0.020  Sum_probs=113.0

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEee-eecCcccCCCCCCcc------chHHHHHHHHhCCCcccc
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKP-IASGAYLNNKNKIWF------NEDVNLLNKYSNSLYEFT   76 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp-~~~~~~~~~~~~~l~------~~d~~~~~~~~~~~~~~~   76 (233)
                      .+.++|+|+|.||||||||+|+|||.+|+++|+||+++|. +.++.-..-  .|+.      ..+. ......+...+..
T Consensus       104 ~~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlID~~DpQ~nlt~~--~g~~~~~~~~~~~~-l~~~~~~~~~~~~  180 (388)
T PRK13705        104 VFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTASMY--HGWVPDLHIHAEDT-LLPFYLGEKDDAT  180 (388)
T ss_pred             CCCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEEcCCCCCCchhhh--cCcCcccccccccc-HHHHHhcCCCchh
Confidence            3578999999999999999999999999999999999982 222111000  0110      0011 1111111110000


Q ss_pred             cceee----eeecCCCChhhhh---h---hc--CCC-C-CHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHH
Q psy14904         77 KLINP----YLFKYPISPYTSS---N---LE--NRI-I-NTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLA  142 (233)
Q Consensus        77 ~~~~~----~~~~~~~~~~~~~---~---~~--~~~-~-~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~  142 (233)
                      +.+.+    ...-.|....+..   .   ..  +.. . ....+++.+++++++||||||||||++..     ++...++
T Consensus       181 ~~i~~t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~l~~l~~~YD~IiIDtpP~l~~-----~t~nal~  255 (388)
T PRK13705        181 YAIKPTCWPGLDIIPSCLALHRIETELMGKFDEGKLPTDPHLMLRLAIETVAHDYDVIVIDSAPNLGI-----GTINVVC  255 (388)
T ss_pred             hheecCCCCCEEEEeCCHHHHHHHHHHHHhhhcccccccHHHHHHHHHHhhhccCCEEEEECCCchhH-----HHHHHHH
Confidence            01110    0111222222211   0   00  100 1 13457788888989999999999988742     2333333


Q ss_pred             HHhCCCEEEEEcCCCCcHHH---HHHHHHHHHh------CCCcEEEEEEcccCCCchh-hhhhhHHHHHhhcCCCceE-e
Q psy14904        143 EKLGLPIILVIDLKIGCINN---ALLSLEAINS------RGLKLIGWVANHTQIVDTL-FANENYIELTKYLNVTPLG-R  211 (233)
Q Consensus       143 ~~~~~~vllV~~~~~~~~~~---~~~~~~~l~~------~~~~i~GiVlN~~~~~~~~-~~~~~~~~l~~~~~~pvlg-~  211 (233)
                      ++  .-+|+++.++..++..   +...++.+.+      .+.+ +.+++|+++ ++.. ..+...+.+++.++-.+|. .
T Consensus       256 Aa--D~viiP~~~~~~s~~g~~~~~~~i~~~~~~~~~~~~~~~-l~il~t~~~-~~~~~~~~~~~~~l~~~~~~~vl~~~  331 (388)
T PRK13705        256 AA--DVLIVPTPAELFDYTSALQFFDMLRDLLKNVDLKGFEPD-VRILLTKYS-NSNGSQSPWMEEQIRDAWGSMVLKNV  331 (388)
T ss_pred             Hc--CEEEEecCCcHHHHHHHHHHHHHHHHHHHHHhhccCCCC-eEEEEEEec-CCCchHHHHHHHHHHHHhcccccccc
Confidence            32  2577777776544433   3333333322      1223 458999998 5532 2334667888888877884 5


Q ss_pred             cCCCCCCC
Q psy14904        212 IPYLYNLN  219 (233)
Q Consensus       212 IP~~~~l~  219 (233)
                      ||+...+.
T Consensus       332 I~~s~~i~  339 (388)
T PRK13705        332 VRETDEVG  339 (388)
T ss_pred             CcccchHh
Confidence            88876555

>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring

Probab=99.81  E-value=6.4e-19  Score=148.55  Aligned_cols=203  Identities=14%  Similarity=0.054  Sum_probs=111.3

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccc----hHHHHHHHHhCCCcccccce
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFN----EDVNLLNKYSNSLYEFTKLI   79 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~----~d~~~~~~~~~~~~~~~~~~   79 (233)
                      ++.++|+|++ |||+||||++.|||.+|+++|+||+++|....++.... ..+...    .+........+......+.+
T Consensus        29 ~~~~ii~v~g-kgG~GKSt~a~nLa~~la~~g~rVllid~D~~~~~~~~-~~g~~~~~~i~d~~~~~~l~~~~~~~~dv~  106 (329)
T cd02033          29 KKTQIIAIYG-KGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSDTTSL-LFGGKACPTIIETSAKKKLAGEEVQIGDVC  106 (329)
T ss_pred             CCCeEEEEEC-CCCCCHHHHHHHHHHHHHHCCCcEEEEEeeecccccch-hccccCCCcccccccccccCcccceeeceE
Confidence            4578999996 89999999999999999999999999983322111000 000000    01000000000000000000


Q ss_pred             ---eeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHh---hcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEE
Q psy14904         80 ---NPYLFKYPISPYTSSNLENRIINTSHIINCYNYL---SNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVI  153 (233)
Q Consensus        80 ---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l---~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~  153 (233)
                         ..+....+..|..+....++.  .....+.++++   ..+||||||||+++..++   ++ ...++......+++|+
T Consensus       107 ~~~~gv~~~~~g~p~~~~G~~~~~--~i~~~~~l~~l~~~~w~~DyVliD~~gdv~~g---gf-~l~i~~~~ad~VIVVt  180 (329)
T cd02033         107 FKRDGVFAMELGGPEVGRGCGGRG--IIHGFELLEKLGFHDWDFDYVLLDFLGDVVCG---GF-GLPIARDMAQKVIVVG  180 (329)
T ss_pred             EEeCCEEEecCCCCeecccccchH--HHHHHHHHHHccCccccCCEEEEecCCcceec---cc-cchhhhcCCceEEEeC
Confidence               001111111222221110100  01112344433   347999999998765321   10 0112222334688888


Q ss_pred             cCCCCcHH---HHHHHHHHHHhC--CCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCCh
Q psy14904        154 DLKIGCIN---NALLSLEAINSR--GLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNI  220 (233)
Q Consensus       154 ~~~~~~~~---~~~~~~~~l~~~--~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~  220 (233)
                      +++..++.   .+...++.+++.  +.++.|+|+||++ ..     ...+.+.+.+++|++|.||+++.+..
T Consensus       181 ~pe~~si~~A~~v~kai~~~~~lg~~~~i~GlViNr~d-~~-----~~ie~~ae~lgi~vLg~IP~D~~V~~  246 (329)
T cd02033         181 SNDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDD-GT-----GEAQAFAAHAGIPILAAIPADEELRR  246 (329)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcC-Cc-----chHHHHHHHhCCCEEEECCCCHHHHH
Confidence            88887764   456666777655  5778999999987 32     23566667789999999999987654

This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.

>PRK13230 nitrogenase reductase-like protein; Reviewed

Probab=99.80  E-value=6.7e-19  Score=146.66  Aligned_cols=202  Identities=14%  Similarity=0.124  Sum_probs=103.6

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccC--CCCCCccchHH-HHHHHHhCC-Ccccccceee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLN--NKNKIWFNEDV-NLLNKYSNS-LYEFTKLINP   81 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~--~~~~~l~~~d~-~~~~~~~~~-~~~~~~~~~~   81 (233)
                      |++|+|+ +||||||||+|+|||.+|+++|+||+++|   .|++..  ....+....+. +.+.. .+. ..+..+.+.+
T Consensus         1 ~~~i~~~-gKGGVGKTT~a~nLA~~La~~G~rVLliD---~Dpq~n~t~~l~~~~~~~l~d~~~~-~~~~~~~~~~~i~~   75 (279)
T PRK13230          1 MRKFCFY-GKGGIGKSTTVCNIAAALAESGKKVLVVG---CDPKADCTRNLVGEKIPTVLDVLRE-KGIDNLGLEDIIYE   75 (279)
T ss_pred             CcEEEEE-CCCCCcHHHHHHHHHHHHHhCCCEEEEEe---eCCcccccccccCccCCCHHHHHHh-cCCCCCCHHHheee
Confidence            6899999 59999999999999999999999999998   333311  00001000111 11111 000 0011011111


Q ss_pred             e---eecCCCChhhhh-hhcCCC-CCHHHHHHHHHHhh-cCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcC
Q psy14904         82 Y---LFKYPISPYTSS-NLENRI-INTSHIINCYNYLS-NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDL  155 (233)
Q Consensus        82 ~---~~~~~~~~~~~~-~~~~~~-~~~~~l~~~~~~l~-~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~  155 (233)
                      .   ..-.|....... ...+.. .....+.+.+..+. .+||||||||++++...   .+.. ..+......+++++.+
T Consensus        76 ~~~~l~lipa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~yD~viID~~~~~~~~---~l~~-~~~~~aAD~vlIp~~p  151 (279)
T PRK13230         76 GFNGIYCVESGGPEPGYGCAGRGVITAIDLLKKLGVFEELGPDVVIYDILGDVVCG---GFAM-PLQKGLADDVYIVTTC  151 (279)
T ss_pred             CCCCcEEEECCCCCCCCCcCCcchhhHHHHHHHcCcccccCCCEEEEecCCccccC---Cccc-cccccccceEEEeccc
Confidence            0   000011100000 000000 00011222222333 47999999997654210   1110 0000011368889998


Q ss_pred             CCCcHHHHH---HHHHHHHh-CCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCC
Q psy14904        156 KIGCINNAL---LSLEAINS-RGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLN  219 (233)
Q Consensus       156 ~~~~~~~~~---~~~~~l~~-~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~  219 (233)
                      +..++..+.   ..++.+++ .+.++.|+|.|. + ... ...+..+.+++.++.++++.||++..+.
T Consensus       152 ~~~si~~~~~ll~~i~~~~~~~~~~i~gIv~n~-r-~~~-~~~~~~e~l~~~~g~~vl~~Ip~~~~v~  216 (279)
T PRK13230        152 DPMAIYAANNICKGIKRFAKRGKSALGGIIYNG-R-SVI-DAPDIVEEFAKKIGTNVIGKIPMSNIIT  216 (279)
T ss_pred             hHHHHHHHHHHHHHHHHHhhcCCCcceEEEEec-c-CCC-chhHHHHHHHHHhCCcEEEECCCChHHH
Confidence            876665544   34444433 477888888553 2 211 1235677788788999999999987654

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=99.80  E-value=6e-18  Score=157.38  Aligned_cols=169  Identities=17%  Similarity=0.214  Sum_probs=109.5

Q ss_pred             CCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCccc-------
Q psy14904          3 NKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEF-------   75 (233)
Q Consensus         3 ~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~-------   75 (233)
                      .+..|+|+|||.++|+||||+|+|||.+|++.|+||+++|.....+.... ..++.+ +.. +..+......+       
T Consensus       528 ~~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r~~~l~~-~~~~~~-~~g-l~~~l~~~~~~~~~i~~~  604 (726)
T PRK09841        528 ETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHN-LFTVSN-EHG-LSEYLAGKDELNKVIQHF  604 (726)
T ss_pred             CCCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCcHHH-HcCCCC-CCC-HHHHhCCCCCHHHheecc
Confidence            45678999999999999999999999999999999999993322111000 000000 000 01111000000       


Q ss_pred             -ccceeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEc
Q psy14904         76 -TKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVID  154 (233)
Q Consensus        76 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~  154 (233)
                       .+++.... ..+..++.. ++    +..+++.+.++++++.||+|||||||.+..      ..+.+++...+.+++|+.
T Consensus       605 ~~~~l~vl~-~g~~~~~p~-el----l~~~~~~~ll~~l~~~yD~IIIDtPP~~~~------~Da~~la~~ad~~llVvr  672 (726)
T PRK09841        605 GKGGFDVIT-RGQVPPNPS-EL----LMRDRMRQLLEWANDHYDLVIVDTPPMLAV------SDAAVVGRSVGTSLLVAR  672 (726)
T ss_pred             CCCCEEEEe-CCCCCCCHH-HH----hCcHHHHHHHHHHHhcCCEEEEeCCCcccc------chHHHHHHhCCeEEEEEe
Confidence             01121111 111111111 11    234678899999999999999999976532      223343444457899999


Q ss_pred             CCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904        155 LKIGCINNALLSLEAINSRGLKLIGWVANHTQ  186 (233)
Q Consensus       155 ~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~  186 (233)
                      ++.++..++...++.+++.+.+++|+|+|+++
T Consensus       673 ~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~~~  704 (726)
T PRK09841        673 FGLNTAKEVSLSMQRLEQAGVNIKGAILNGVI  704 (726)
T ss_pred             CCCCCHHHHHHHHHHHHhCCCceEEEEEeCcc
Confidence            99988888999999999999999999999997

>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]

Probab=99.79  E-value=2.1e-18  Score=138.37  Aligned_cols=105  Identities=21%  Similarity=0.285  Sum_probs=80.9

Q ss_pred             HHHHHHHHHhhcC-CCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEE
Q psy14904        104 SHIINCYNYLSNL-TDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVA  182 (233)
Q Consensus       104 ~~l~~~~~~l~~~-~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVl  182 (233)
                      .++...+.+..+. .|++|||+|+|...|....+..+|+       +++|+.+...+++++.+.++.+++.+++ .++|+
T Consensus       150 ~~lV~~~kk~a~E~~~~~IIDsaaG~gCpVi~sl~~aD~-------ai~VTEPTp~glhD~kr~~el~~~f~ip-~~iVi  221 (284)
T COG1149         150 GKLVTALKKHAKELADLLIIDSAAGTGCPVIASLKGADL-------AILVTEPTPFGLHDLKRALELVEHFGIP-TGIVI  221 (284)
T ss_pred             chHHHHHHHhhhhhcceeEEecCCCCCChHHHhhccCCE-------EEEEecCCccchhHHHHHHHHHHHhCCc-eEEEE
Confidence            3555555554444 6999999999999887655555653       7999999998999999999999999999 88999


Q ss_pred             cccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCChh
Q psy14904        183 NHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNIN  221 (233)
Q Consensus       183 N~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~~  221 (233)
                      ||++ +..  . +..+. .+..|+|+++.||++.++...
T Consensus       222 Nr~~-~g~--s-~ie~~-~~e~gi~il~~IPyd~~i~~~  255 (284)
T COG1149         222 NRYN-LGD--S-EIEEY-CEEEGIPILGEIPYDKDIPEA  255 (284)
T ss_pred             ecCC-CCc--h-HHHHH-HHHcCCCeeEECCcchhHHHH
Confidence            9996 532  1 23333 445699999999999877643

>PRK11519 tyrosine kinase; Provisional

Probab=99.78  E-value=4.7e-18  Score=157.92  Aligned_cols=167  Identities=14%  Similarity=0.184  Sum_probs=110.5

Q ss_pred             CCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccC-----CCCCCccchHHHHHHHHhCC-----C
Q psy14904          3 NKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLN-----NKNKIWFNEDVNLLNKYSNS-----L   72 (233)
Q Consensus         3 ~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~-----~~~~~l~~~d~~~~~~~~~~-----~   72 (233)
                      ++..++|+|||.+||+||||+|.|||.+|++.|+||+++|-+...+...     ....|+.  |  .+.....+     .
T Consensus       523 ~~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~~gl~--~--~l~~~~~l~~~i~~  598 (719)
T PRK11519        523 QAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLS--D--ILIGQGDITTAAKP  598 (719)
T ss_pred             CCCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCCCCHH--H--HhCCCCCHHHhecc
Confidence            4467899999999999999999999999999999999999322211100     0001211  1  11100000     0


Q ss_pred             cccccceeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEE
Q psy14904         73 YEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILV  152 (233)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV  152 (233)
                      ... +++.-.. ..+..++...     .+..+++.+.++++++.||+|||||||-+..      ..+.++..+.+.+++|
T Consensus       599 ~~~-~~l~~lp-~g~~~~~~~e-----ll~s~~~~~ll~~l~~~yD~ViiDtpP~~~v------~Da~~l~~~~d~~l~V  665 (719)
T PRK11519        599 TSI-ANFDLIP-RGQVPPNPSE-----LLMSERFAELVNWASKNYDLVLIDTPPILAV------TDAAIVGRHVGTTLMV  665 (719)
T ss_pred             cCc-CCEEEEe-CCCCCCCHHH-----HhhHHHHHHHHHHHHhcCCEEEEeCCCcccc------hHHHHHHHHCCeEEEE
Confidence            000 1222111 1111122211     1235688999999999999999999976432      3344444555578999


Q ss_pred             EcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904        153 IDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ  186 (233)
Q Consensus       153 ~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~  186 (233)
                      +.++......+..+++.+++.+.+++|+|+|+++
T Consensus       666 vr~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~v~  699 (719)
T PRK11519        666 ARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIF  699 (719)
T ss_pred             EeCCCCCHHHHHHHHHHHHhCCCCeEEEEEeCCc
Confidence            9999988888888999999999999999999997

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=99.77  E-value=8.9e-18  Score=157.37  Aligned_cols=169  Identities=10%  Similarity=-0.014  Sum_probs=106.0

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccC-----CCCCCccchHHHH----HHHHhCCCcc
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLN-----NKNKIWFNEDVNL----LNKYSNSLYE   74 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~-----~~~~~l~~~d~~~----~~~~~~~~~~   74 (233)
                      ++.++|+|+|.|||+||||+|.|||..|++.|+||+++|.+..++...     ....|+.  +...    +..... ...
T Consensus       544 ~~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~~~~l~~~~~~~~~~gl~--~~l~~~~~~~~~i~-~~~  620 (754)
T TIGR01005       544 AEPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGRKAALSQILVAREVSGLL--DLLAGLRSLLLDLT-ASG  620 (754)
T ss_pred             CCceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHhCCcccCChH--HHHcCCccHHHHhc-cCC
Confidence            356899999999999999999999999999999999999332211100     0001111  0000    000000 000


Q ss_pred             cccceeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEc
Q psy14904         75 FTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVID  154 (233)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~  154 (233)
                      . +++.-... .+..+... +.    ....++.+.++++++.||+|||||||.+..     .....++.. .+.+++|+.
T Consensus       621 ~-~~l~~l~~-g~~~~~~~-~l----l~~~~~~~~l~~l~~~yD~IiID~pp~~~~-----~d~~~l~~~-~D~vl~v~~  687 (754)
T TIGR01005       621 A-ASLPMLDS-GLFPHGIT-EL----LASPAMFSLVIHARLYSDCVVVDVGTADPV-----RDMRAAARL-AIIMLLVTA  687 (754)
T ss_pred             C-CCeeEecC-CCCCCCHH-HH----hccHHHHHHHHHHHhhCCEEEEcCCCcchh-----HHHHHhhhh-CCeEEEEEE
Confidence            0 12211111 11111111 11    123567888899999999999999977542     122233333 346889999


Q ss_pred             CCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCc
Q psy14904        155 LKIGCINNALLSLEAINSRGLKLIGWVANHTQIVD  189 (233)
Q Consensus       155 ~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~  189 (233)
                      ++..+...+...++.+++.+.+++|+|+|+++ ++
T Consensus       688 ~~~~~~~~~~~~~~~l~~~~~~~~GvvlN~~~-~~  721 (754)
T TIGR01005       688 YDRVVVECGRADAQGISRLNGEVTGVFLNMLD-PN  721 (754)
T ss_pred             eCceeHHHHHHHHHHHHhcCCceEEEEecCCC-hh
Confidence            98888888888999998888999999999998 53

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]

Probab=99.75  E-value=4e-18  Score=147.35  Aligned_cols=212  Identities=19%  Similarity=0.198  Sum_probs=147.6

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHH-hCCCcccccceeeeee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKY-SNSLYEFTKLINPYLF   84 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~-~~~~~~~~~~~~~~~~   84 (233)
                      |+.|++.|+..++|||+++++|++.|+++|++|.-||++-...+..-...|.--.-+.+++.. ++...+  -.++|+.+
T Consensus         1 ~~~iMv~GT~S~~GKS~~~aglcRi~~~~G~~V~PFK~QNMsLNs~it~~G~EIgraQ~~QA~Aa~i~p~--v~mNPvLL   78 (486)
T COG1492           1 MKAIMVQGTTSDAGKSFLVAGLCRILARRGYRVAPFKSQNMSLNSAITPGGGEIGRAQALQALAAGIEPS--VHMNPVLL   78 (486)
T ss_pred             CCccEEEeccCCcchhhhhhhhhHHHHhcCCccCCCchhhcccccEECCCCcEEehhhhHHHHHcCCCCc--cccCCEEE
Confidence            357999999999999999999999999999999999977554442110011111233444443 455443  35677665


Q ss_pred             cCCC--Chh----------hh-hh--hcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCc-c-CCCCchHHHHHHhCC
Q psy14904         85 KYPI--SPY----------TS-SN--LENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVP-F-HDNENSADLAEKLGL  147 (233)
Q Consensus        85 ~~~~--~~~----------~~-~~--~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p-~-~~~~~~~~l~~~~~~  147 (233)
                      +...  +..          .+ .+  .+........+.+.++++.+.||+|++|++++.... + ...+.+..+|...++
T Consensus        79 KP~sd~~sQVIv~G~~~G~~s~~~yy~~~~~~l~~~v~~s~~~l~~~~d~Vv~EGAGSpaEiNlr~~Di~Nm~~a~~~da  158 (486)
T COG1492          79 KPCSDTGSQVIVMGKDIGRKSAVEYYQEGKGLLWVAVKESLERLDREYDVVVIEGAGSPAEINLRDRDIANMGVAEIADA  158 (486)
T ss_pred             eecCCCceEEEEecccccccChHHHHHHHHHHHHHHHHHHHHHhhhcccEEEEecCCChhhcCcccccccceeeehhcCC
Confidence            4321  100          00 01  011122356788888899999999999999876532 2 134566777777889


Q ss_pred             CEEEEEcCCCCc-HHHHHHHHHHHH-hCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCCh
Q psy14904        148 PIILVIDLKIGC-INNALLSLEAIN-SRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNI  220 (233)
Q Consensus       148 ~vllV~~~~~~~-~~~~~~~~~~l~-~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~  220 (233)
                      |+|+|.+-+.+. +.++.-++..+. +.+.++.|+|+||++ .+....+..+++|++.+|.|+||++||......
T Consensus       159 pvILV~DIdRGGvfAsl~GT~~lL~~~~r~~VkG~iINkFR-Gd~~ll~~gik~Le~~tg~~vlGv~P~~~~~~~  232 (486)
T COG1492         159 PVILVGDIDRGGVFASLYGTLALLPESDRALVKGFIINKFR-GDESLLDPGLKWLEELTGVPVLGVLPYLKDALR  232 (486)
T ss_pred             CEEEEEeecccceeeeeeehheecCHhHhcceeEEEEeeeC-CCHHHHhhHHHHHHHhhCCeeEeeccccccccC
Confidence            999999999864 344555565553 456689999999999 666666788999999999999999999886664

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=99.72  E-value=3.3e-16  Score=117.22  Aligned_cols=132  Identities=22%  Similarity=0.232  Sum_probs=92.7

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeecCC
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKYP   87 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (233)
                      +|++++.|||+||||++.+||..++++|++|+++|   .+++.                          ..+.       
T Consensus         1 ~i~~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd---~D~~~--------------------------~~~~-------   44 (139)
T cd02038           1 IIAVTSGKGGVGKTNISANLALALAKLGKRVLLLD---ADLGL--------------------------ANLD-------   44 (139)
T ss_pred             CEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEE---CCCCC--------------------------CCCC-------
Confidence            48899999999999999999999999999999998   22211                          0000       


Q ss_pred             CChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHH
Q psy14904         88 ISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSL  167 (233)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~  167 (233)
                                                   ||+||||+|+++..      ....++...| .+++|++++..++..+...+
T Consensus        45 -----------------------------yd~VIiD~p~~~~~------~~~~~l~~aD-~vviv~~~~~~s~~~~~~~l   88 (139)
T cd02038          45 -----------------------------YDYIIIDTGAGISD------NVLDFFLAAD-EVIVVTTPEPTSITDAYALI   88 (139)
T ss_pred             -----------------------------CCEEEEECCCCCCH------HHHHHHHhCC-eEEEEcCCChhHHHHHHHHH
Confidence                                         99999999987542      1233444444 68899999887777766666


Q ss_pred             HHHHh-CCCcEEEEEEcccCCCchhhhhhhHHHHHh------hcCCCceEecC
Q psy14904        168 EAINS-RGLKLIGWVANHTQIVDTLFANENYIELTK------YLNVTPLGRIP  213 (233)
Q Consensus       168 ~~l~~-~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~------~~~~pvlg~IP  213 (233)
                      +.+.+ .+..-+++|+||+. +.. ..++..+.+++      ..++|++|.||
T Consensus        89 ~~l~~~~~~~~~~lVvN~~~-~~~-~~~~~~~~~~~~~~r~~~~~l~~~~~~~  139 (139)
T cd02038          89 KKLAKQLRVLNFRVVVNRAE-SPK-EGKKVFKRLSNVSNRFLGLSLDYLGFIP  139 (139)
T ss_pred             HHHHHhcCCCCEEEEEeCCC-CHH-HHHHHHHHHHHHHHHHhCCChhhceecC
Confidence            66643 33445889999997 432 22333333332      24679999998

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=99.70  E-value=2.3e-15  Score=119.59  Aligned_cols=144  Identities=13%  Similarity=0.113  Sum_probs=86.3

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeec
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFK   85 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~   85 (233)
                      |++|.++|.|||+||||.+..||..|+++|.+|.+||   .|++..         -..|-+. ......+++.+. + +.
T Consensus         1 M~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lID---aDpn~p---------l~~W~~~-a~~~~~~~~~~~-V-~~   65 (231)
T PF07015_consen    1 MPVITFASSKGGAGKTTAAMALASELAARGARVALID---ADPNQP---------LAKWAEN-AQRPGAWPDRIE-V-YE   65 (231)
T ss_pred             CCeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEe---CCCCCc---------HHHHHHh-ccccCCCCCCee-E-Ee
Confidence            7899999999999999999999999999999999999   555431         1223221 111111101111 1 11


Q ss_pred             CCCChhhhhhhcCCCCCHHHHHHHHHHhh-cCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHH
Q psy14904         86 YPISPYTSSNLENRIINTSHIINCYNYLS-NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNAL  164 (233)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~  164 (233)
                      .              .....+.+.++... +.|||||||+.|+-+ +     . .+.+.....-||+.+.......+++.
T Consensus        66 ~--------------~e~~~l~~~~e~a~~~~~d~VlvDleG~as-~-----~-~~~aia~sDlVlIP~~~s~lD~~eA~  124 (231)
T PF07015_consen   66 A--------------DELTILEDAYEAAEASGFDFVLVDLEGGAS-E-----L-NDYAIARSDLVLIPMQPSQLDADEAA  124 (231)
T ss_pred             c--------------cchhhHHHHHHHHHhcCCCEEEEeCCCCCc-h-----h-HHHHHHHCCEEEECCCCChHHHHHHH
Confidence            0              11234666666544 469999999987643 1     1 22222222345554544433444555


Q ss_pred             HHHHHHH------hCCCcEEEEEEcccC
Q psy14904        165 LSLEAIN------SRGLKLIGWVANHTQ  186 (233)
Q Consensus       165 ~~~~~l~------~~~~~i~GiVlN~~~  186 (233)
                      .+++.++      +.+++ ..|++||++
T Consensus       125 ~t~~~v~~~~~~~~~~ip-~~Vl~Tr~~  151 (231)
T PF07015_consen  125 KTFKWVRRLEKAERRDIP-AAVLFTRVP  151 (231)
T ss_pred             HHHHHHHHHHHhhCCCCC-eeEEEecCC
Confidence            5544443      45667 469999997

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA)

Probab=99.70  E-value=5.1e-16  Score=127.50  Aligned_cols=108  Identities=10%  Similarity=0.109  Sum_probs=69.9

Q ss_pred             HHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHH----HHh----CCCEEEEEcCCCCcHHHHHHHHHHHHhCCC
Q psy14904        104 SHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLA----EKL----GLPIILVIDLKIGCINNALLSLEAINSRGL  175 (233)
Q Consensus       104 ~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~----~~~----~~~vllV~~~~~~~~~~~~~~~~~l~~~~~  175 (233)
                      .++.+.+++  .+||+|||||||.-..  ...+...+..    ..+    ...+++|+.++..++.++...++.++..++
T Consensus       114 ~~~~~~l~~--~~yD~VVvDtpPtg~t--lrlL~lp~~l~~~~~~l~d~~~~~~vlV~~p~~~~~~e~~r~~~~L~~~g~  189 (254)
T cd00550         114 DEFSRYIDE--AEYDVVVFDTAPTGHT--LRLLSLPTVLSWAREILSDPERTSFRLVCIPEKMSLYETERAIQELAKYGI  189 (254)
T ss_pred             HHHHHHHhc--CCCCEEEECCCCcHHH--HHHHHhHHHHHHHHHHhcCCcceEEEEEeCCChhHHHHHHHHHHHHHHCCC
Confidence            344444443  4799999999873110  0111122211    111    125899999999899999999999999999


Q ss_pred             cEEEEEEcccCCCchh-----------hhhhhHHHHHhhc-CCCceEecCCCCC
Q psy14904        176 KLIGWVANHTQIVDTL-----------FANENYIELTKYL-NVTPLGRIPYLYN  217 (233)
Q Consensus       176 ~i~GiVlN~~~~~~~~-----------~~~~~~~~l~~~~-~~pvlg~IP~~~~  217 (233)
                      ++.|+|+|++. +...           .++..++.+++.+ +.|++ .||+.+.
T Consensus       190 ~v~gvV~N~v~-~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~i~-~vp~~~~  241 (254)
T cd00550         190 DVDAVIVNQLL-PEDVTNCPFLEARREIQQKYLEEIEELFSDLPVA-KLPLLPE  241 (254)
T ss_pred             CCCEEEEecCc-ccccCCCHHHHHHHHHHHHHHHHHHHHhcCCCEE-EeecCCC
Confidence            99999999997 4221           1234455666555 56776 7887653

This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=99.68  E-value=2.4e-15  Score=118.53  Aligned_cols=198  Identities=20%  Similarity=0.143  Sum_probs=113.3

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHc-CCeeeEEeeeecCcccC-CCCCCccc------hHHHHHHHHhCCCccc-ccc
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKR-GISCIGMKPIASGAYLN-NKNKIWFN------EDVNLLNKYSNSLYEF-TKL   78 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~-G~~Vl~~dp~~~~~~~~-~~~~~l~~------~d~~~~~~~~~~~~~~-~~~   78 (233)
                      .|+|+|. ||+||||+|+.|+..|..+ |++|+++|   ++++.. ...-|...      +--++++...+-.... ..+
T Consensus         2 kIaI~GK-GG~GKTtiaalll~~l~~~~~~~VLvVD---aDpd~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~   77 (255)
T COG3640           2 KIAITGK-GGVGKTTIAALLLKRLLSKGGYNVLVVD---ADPDSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGE   77 (255)
T ss_pred             eEEEecC-CCccHHHHHHHHHHHHHhcCCceEEEEe---CCCCCChHHhcCCCCCCcccccHHHHHHHHhccCCCCCccc
Confidence            4788876 9999999999977777666 59999999   444310 00001100      1112233332211100 000


Q ss_pred             eeeeeecCC-CChhhhhh-----------hc--CCC---CCHHHHHHHHHHhhcC-CCeEEEeccCcccCccCCCCchHH
Q psy14904         79 INPYLFKYP-ISPYTSSN-----------LE--NRI---INTSHIINCYNYLSNL-TDVIILEGIGGFSVPFHDNENSAD  140 (233)
Q Consensus        79 ~~~~~~~~~-~~~~~~~~-----------~~--~~~---~~~~~l~~~~~~l~~~-~D~vlID~~~g~~~p~~~~~~~~~  140 (233)
                      +.-..+... .......+           .+  |+.   .....+++.++.+..+ ||+|||||-+|+-. +.+.     
T Consensus        78 ~fk~~~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp~~allR~~l~~l~~~~~e~VivDtEAGiEH-fgRg-----  151 (255)
T COG3640          78 MFKENPLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACPMNALLRRLLRHLILNRYEVVIVDTEAGIEH-FGRG-----  151 (255)
T ss_pred             ccccCcchhhhhHHHhhhcCCccEEEeccccCCCCcccchHHHHHHHHHHHHhcccCcEEEEecccchhh-hccc-----
Confidence            100000000 00000000           00  111   1234678888887755 99999999888732 2222     


Q ss_pred             HHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCCh
Q psy14904        141 LAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNI  220 (233)
Q Consensus       141 l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~  220 (233)
                      .+..+ +-+++|++++..++.-+....+..++.+++-+++|+||++ ..    +..+.......+.+++|.||+++.+..
T Consensus       152 ~~~~v-D~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~-e~----e~~~~~~~~~~~~~vlg~iP~d~~v~~  225 (255)
T COG3640         152 TIEGV-DLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVD-EE----EELLRELAEELGLEVLGVIPYDPEVVE  225 (255)
T ss_pred             cccCC-CEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeecc-ch----hHHHHhhhhccCCeEEEEccCCHHHHh
Confidence            12222 2589999998777765665666666788777999999998 32    344555555679999999999997765


Q ss_pred             h
Q psy14904        221 N  221 (233)
Q Consensus       221 ~  221 (233)
                      -
T Consensus       226 ~  226 (255)
T COG3640         226 A  226 (255)
T ss_pred             c
Confidence            4

>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell

Probab=99.64  E-value=4.7e-15  Score=119.09  Aligned_cols=164  Identities=12%  Similarity=0.024  Sum_probs=92.6

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccC---CCCCCccc------hHH---HHHHHHhCCC---c
Q psy14904          9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLN---NKNKIWFN------EDV---NLLNKYSNSL---Y   73 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~---~~~~~l~~------~d~---~~~~~~~~~~---~   73 (233)
                      |.+++.|||+||||++++||.+++++|+||++++   +++...   ...+++.+      .+.   .+........   .
T Consensus         1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~---~d~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~   77 (217)
T cd02035           1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVS---TDPAHNLSDKGLPNLSDAFIVEDPEIAPNLYREEVDATRRVER   77 (217)
T ss_pred             CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEE---CCCCcccccccCCCchhhhccCChHHHHHHHHHHHHHHHHhhh
Confidence            3567778999999999999999999999999998   322220   00022221      110   0111110000   0


Q ss_pred             ccc-cceeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcC-CCeEEEeccCcccCccCCCCchHHHHHHhCCCEEE
Q psy14904         74 EFT-KLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNL-TDVIILEGIGGFSVPFHDNENSADLAEKLGLPIIL  151 (233)
Q Consensus        74 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vll  151 (233)
                      ... .+.. +....+..|....        .-.+.+.++.+++. ||+|||||||+...  .+.+....+.......+++
T Consensus        78 ~~~~~~~~-~~~~~~~~p~~~e--------ll~~~~l~~~l~~~~yD~IIiD~pp~~~~--~~~l~~~~l~~~~~~~vll  146 (217)
T cd02035          78 AWGGEGGL-MLELAAALPGIEE--------LASLLAVFREFSEGLYDVIVFDTAPTGHT--LRLLVRELLTDPERTSFRL  146 (217)
T ss_pred             cccchhhh-HHhHhccCCCHHH--------HHHHHHHHHHHhcCCCCEEEECCCCchHH--HHHHHHHHccCCCceEEEE
Confidence            000 0000 0000001111110        11244455556665 99999999975211  0000011111101135899


Q ss_pred             EEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904        152 VIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ  186 (233)
Q Consensus       152 V~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~  186 (233)
                      |+.++..++.++...++.+++.+.++.|+|+|++.
T Consensus       147 V~~p~~~s~~~~~~~l~~l~~~~~~~~glVlN~~~  181 (217)
T cd02035         147 VTLPEKLPLYETERAITELALYGIPVDAVVVNRVL  181 (217)
T ss_pred             EeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCc
Confidence            99999999999999999999999999999999997

This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.

>COG0857 Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only]

Probab=99.63  E-value=2.2e-14  Score=121.58  Aligned_cols=210  Identities=22%  Similarity=0.260  Sum_probs=132.7

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeee--cCcccCCCCCCccchHHHHHHHH-hCCCcccccceee
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIA--SGAYLNNKNKIWFNEDVNLLNKY-SNSLYEFTKLINP   81 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~--~~~~~~~~~~~l~~~d~~~~~~~-~~~~~~~~~~~~~   81 (233)
                      ||++|++.++.+|+|||+++.+|+++|.++|.+|.++||+.  .+.+..    ++...+   .+.. .++...     .|
T Consensus         1 m~~~l~l~p~~~~~G~tsi~lgLl~~l~~k~~kva~~kPI~~~~~~~~~----~~~e~~---~~~~~~~l~~~-----~~   68 (354)
T COG0857           1 MSRTLLLIPTETGVGKTSISLGLLRALEQKGLKVAYFKPIGTRTGKDAD----DLTEED---IRATSSSLTYA-----EP   68 (354)
T ss_pred             CcceEEEeccCCCccHHHHHHHHHHHHHHcCceeEEEeccccccCCccc----hhHHHH---HHHhhhhcccC-----cc
Confidence            68999999999999999999999999999999999999997  333321    111111   1111 121110     01


Q ss_pred             eeecCCCChhhhhhhcC-CCCCHHHHHHHHHHhhcCCCeEEEecc-CcccCccCCCCchHHHHHHhCCCEEEEEcCCCCc
Q psy14904         82 YLFKYPISPYTSSNLEN-RIINTSHIINCYNYLSNLTDVIILEGI-GGFSVPFHDNENSADLAEKLGLPIILVIDLKIGC  159 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~~~~D~vlID~~-~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~  159 (233)
                      ..+.    ....-...+ .+..++.+.+.++++.+.+|++++++- +....+. ..-.+..+++.++++++++++....+
T Consensus        69 ~~~~----~ae~L~~~~~~d~l~e~i~~~y~e~~~~~~~vv~~g~~~~~~~~~-~~~ln~~iA~~Lna~~vlva~~~~~~  143 (354)
T COG0857          69 LVLS----FAEVLLSTGQDDVLLEEILANYAELAKDADVVVVEGDVPTREGPY-ALDLNYEIAKNLNAAAVLVARALLVT  143 (354)
T ss_pred             cchh----hHHHHhccccchHHHHHHHHHHHHHhccCceEEeccceeccccCc-cccccHHHHhhcCcchhhccccccCC
Confidence            1111    000000011 122356778888888888999999983 2221121 23468999999999999999998765


Q ss_pred             HHHHHH----HHHHHHhCCCcEEEEEEcccCCCch-hhhhhhHHHHHhhcCCCceEecCCCCCCC---hhhhhhhcCCCC
Q psy14904        160 INNALL----SLEAINSRGLKLIGWVANHTQIVDT-LFANENYIELTKYLNVTPLGRIPYLYNLN---INLISHYLDFSS  231 (233)
Q Consensus       160 ~~~~~~----~~~~l~~~~~~i~GiVlN~~~~~~~-~~~~~~~~~l~~~~~~pvlg~IP~~~~l~---~~~~~~~~~~~~  231 (233)
                      ..+...    ....+...+-++.|+|+|+.. ... ...+..++.+-+..+..+.+.+|..+.++   ..++++.|+.++
T Consensus       144 ~~~~~~~i~~~~~~~~~~~~~l~gVv~N~~~-~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ll~~~~v~dl~~~l~a~v  222 (354)
T COG0857         144 PYELKSRVELALAAFGAAGNNLAGVVINNAP-VDEAGRTEDLLAEFLESSGIAVVGVLPPNRLLRSSPVRDLAKQLNAEV  222 (354)
T ss_pred             hhhhhhHHHHHHHHhcccCCceEEEEecCCC-hhhhhhhhhHHHHHhhhccccccccCCHHHHhcCCcHHHHHHhhCcee
Confidence            544333    333334444489999999665 221 11223344444455788889999988666   347888888776


Q ss_pred             C
Q psy14904        232 L  232 (233)
Q Consensus       232 ~  232 (233)
                      +
T Consensus       223 l  223 (354)
T COG0857         223 L  223 (354)
T ss_pred             c
Confidence            4

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=99.62  E-value=1.1e-14  Score=103.82  Aligned_cols=102  Identities=18%  Similarity=0.166  Sum_probs=76.4

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHc-CCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeecC
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKR-GISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKY   86 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~-G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~   86 (233)
                      +|+|+|+|||+||||++.+||.++++. |++|+++|   .+++.                          ..        
T Consensus         1 ~i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d---~d~~~--------------------------~~--------   43 (106)
T cd03111           1 VIAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVD---LDLQF--------------------------GD--------   43 (106)
T ss_pred             CEEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEE---CCCCC--------------------------CC--------
Confidence            589999999999999999999999998 99999998   32220                          00        


Q ss_pred             CCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHH
Q psy14904         87 PISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLS  166 (233)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~  166 (233)
                                                     |+|||||||++..      ....+.... ..+++|+.++..++..+...
T Consensus        44 -------------------------------D~IIiDtpp~~~~------~~~~~l~~a-D~vlvvv~~~~~s~~~~~~~   85 (106)
T cd03111          44 -------------------------------DYVVVDLGRSLDE------VSLAALDQA-DRVFLVTQQDLPSIRNAKRL   85 (106)
T ss_pred             -------------------------------CEEEEeCCCCcCH------HHHHHHHHc-CeEEEEecCChHHHHHHHHH
Confidence                                           9999999988642      122333333 46899999988787777777


Q ss_pred             HHHHHhCCC---cEEEEEEcc
Q psy14904        167 LEAINSRGL---KLIGWVANH  184 (233)
Q Consensus       167 ~~~l~~~~~---~i~GiVlN~  184 (233)
                      ++.+++.+.   .-..+|+||
T Consensus        86 ~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          86 LELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             HHHHHHcCCCCcCceEEEecC
Confidence            777665443   357788886

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family

Probab=99.61  E-value=5.1e-15  Score=119.34  Aligned_cols=195  Identities=16%  Similarity=0.186  Sum_probs=105.7

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCC---CCcc-chHHHHHHHHhCCCccc-ccc-e-
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKN---KIWF-NEDVNLLNKYSNSLYEF-TKL-I-   79 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~---~~l~-~~d~~~~~~~~~~~~~~-~~~-~-   79 (233)
                      |.|+|-|. ||+||||++.||+.+|+++|+||+.+-   ++|......   .+.. +.-.+.+++. +..+.. .+. + 
T Consensus         1 r~IAiYGK-GGIGKST~~~Nlsaala~~G~kVl~iG---CDPK~DST~~ll~g~~~~Tvld~~~~~-~~~e~~~ledvv~   75 (273)
T PF00142_consen    1 RKIAIYGK-GGIGKSTTASNLSAALAEMGKKVLQIG---CDPKADSTRLLLGGKAIPTVLDLLREK-GSVEDLELEDVVK   75 (273)
T ss_dssp             EEEEEEES-TTSSHHHHHHHHHHHHHHTT--EEEEE---ESSSSTSSCHHHTTSS-SBHHHHHHHH-CTGGGS-HHHHSE
T ss_pred             CeEEEEcC-CCcccChhhhHHHHHHHhccceeeEec---ccCCCccceeccCCccchhHHHHHhhc-cccccCCCCcEEE
Confidence            46888887 999999999999999999999999974   444321100   1111 1122223332 210111 011 1 


Q ss_pred             ---eeeeecCCCChhhhhhhcCCCCCHHHHHHHHHH---hhcCCCeEEEecc-----CcccCccCCCCchHHHHHHhCCC
Q psy14904         80 ---NPYLFKYPISPYTSSNLENRIINTSHIINCYNY---LSNLTDVIILEGI-----GGFSVPFHDNENSADLAEKLGLP  148 (233)
Q Consensus        80 ---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---l~~~~D~vlID~~-----~g~~~p~~~~~~~~~l~~~~~~~  148 (233)
                         ..+..-+..+|.+.....++.+  -.-.+.+++   ...++|+|+.|..     +|+..|+..++  +       ..
T Consensus        76 ~G~~gi~CvEsGGPePGvGCaGRGI--~~a~~~L~~~~~~~~~~D~v~yDVLGDVVCGGFamPir~g~--a-------~e  144 (273)
T PF00142_consen   76 EGFKGILCVESGGPEPGVGCAGRGI--ITALELLEELGAYEDDYDFVLYDVLGDVVCGGFAMPIREGY--A-------QE  144 (273)
T ss_dssp             EEGGGEEEEE---SCTTSSBHHHHH--HHHHHHHHHTTTSTSTSSEEEEEEESSSSCTTTTHHHHTTS----------SE
T ss_pred             eccCCceeeccCCCcccccccccch--hhhhhhHHhhhhhhcCCceEEEEEEeeeEEeeeehhhhhcc--C-------CE
Confidence               1111111122322211111111  111223333   2346999999974     44444554332  2       26


Q ss_pred             EEEEEcCCCCcH---HHHHHHHHHHH-hCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCCh
Q psy14904        149 IILVIDLKIGCI---NNALLSLEAIN-SRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNI  220 (233)
Q Consensus       149 vllV~~~~~~~~---~~~~~~~~~l~-~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~  220 (233)
                      +++|++.+..++   +.+...++... +.+.++.|+|.|+-+ .  ...++.++.+.+..|.|+++.||+++.+..
T Consensus       145 vyIVtSge~mslyAANNI~~~i~~~~~~g~~~l~GiI~N~r~-~--~~e~~~v~~fa~~~g~~i~~~iPr~~~v~~  217 (273)
T PF00142_consen  145 VYIVTSGEFMSLYAANNICKAIKNFADRGGARLGGIICNSRN-V--DDEEEIVEDFAERIGTPIIAFIPRSEIVQR  217 (273)
T ss_dssp             EEEEEBSSHHHHHHHHHHHHHHHHHCTTSS-EEEEEEEE-SS-S--TTHHHHHHHHHHHHTSEEEEEE---HHHHH
T ss_pred             EEEEecCcHHHHHHHHHHHHHHHHHhccCCCceEEEEecCCC-C--CCchHHHHHHHHHcCCcEEEecCchHHHHH
Confidence            899999987654   56677777665 446799999999765 1  233567777788889999999999986653

Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....

>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments

Probab=99.61  E-value=1.1e-15  Score=122.07  Aligned_cols=109  Identities=12%  Similarity=0.128  Sum_probs=57.7

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeecC
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKY   86 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~   86 (233)
                      .+|+|.|.|||+||||+|.|||.+|+++|+||.++|.+..++..    +.+......+.. ..+++.+.     |.....
T Consensus         1 HiIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~q~S~----~r~l~nr~~~~~-~~gi~Lp~-----p~~~~L   70 (261)
T PF09140_consen    1 HIIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIRQPSL----PRYLENRAAWAQ-RDGIELPV-----PSHFFL   70 (261)
T ss_dssp             EEEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TTT-HH----HHHHHHHHHHHH-HHT-----------EEE-S
T ss_pred             CEEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCH----HHHHhccchhHH-hcCcccCC-----ccceee
Confidence            47999999999999999999999999999999999944333221    111100111111 12332211     111111


Q ss_pred             CCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCc
Q psy14904         87 PISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGG  127 (233)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g  127 (233)
                      +.  ....-..+.......|.+.+.++..++||+||||||+
T Consensus        71 ~~--~~~~v~~~~~~~~~~L~q~l~~l~~~~DfLVID~PGt  109 (261)
T PF09140_consen   71 PP--DQASVWEGENVEDKRLEQALADLEGDLDFLVIDTPGT  109 (261)
T ss_dssp             SS--HHHHTTS-HHHHHHHHHHHHHHHHHH-SEEEEEE-SS
T ss_pred             cc--cccccccCcchhHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence            11  1111011111223578888888889999999999954

Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.

>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]

Probab=99.61  E-value=2e-14  Score=112.92  Aligned_cols=199  Identities=17%  Similarity=0.174  Sum_probs=117.9

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCC---CCCc-cchHHHHHHHHhC-CCcccccce-
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNK---NKIW-FNEDVNLLNKYSN-SLYEFTKLI-   79 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~---~~~l-~~~d~~~~~~~~~-~~~~~~~~~-   79 (233)
                      |+.|+|-+. ||.||||++.|++.+|+..|+||+.+-   ++|....+   ..+. .+.-.+.++.... ..... +++ 
T Consensus         1 mr~iAiYGK-GGIGKSTts~N~aAAla~~GkkVl~vG---CDPKaDSTr~Llgg~~ipTVld~lre~~~~e~~~l-edvi   75 (278)
T COG1348           1 MRQIAIYGK-GGIGKSTTSQNLAAALAELGKKVLIVG---CDPKADSTRLLLGGKAIPTVLDTLREKGEVEDLEL-EDVI   75 (278)
T ss_pred             CceEEEecC-CCcCcchhHHHHHHHHHHcCCeEEEEc---CCCCcchHHHHhCCcccchHHHHHHhcCccccCCH-HHhe
Confidence            567888887 999999999999999999999999963   33322110   0111 1111222333110 00001 111 


Q ss_pred             ----eeeeecCCCChhhhhhhcCCCCC-HHHHHHHHHHhhcCCCeEEEecc-----CcccCccCCCCchHHHHHHhCCCE
Q psy14904         80 ----NPYLFKYPISPYTSSNLENRIIN-TSHIINCYNYLSNLTDVIILEGI-----GGFSVPFHDNENSADLAEKLGLPI  149 (233)
Q Consensus        80 ----~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~~~~D~vlID~~-----~g~~~p~~~~~~~~~l~~~~~~~v  149 (233)
                          ..+..-+..+|.+.....++.+- .-.+.+.+....+..|+|+.|..     +|+..|+...+  |+       .+
T Consensus        76 ~~Gf~Gv~CVEsGGPepGvGCAGRGVitai~~Le~lgaf~~~~DvviyDVLGDVVCGGFAmPiReg~--Ad-------ei  146 (278)
T COG1348          76 FTGFGGVKCVESGGPEPGVGCAGRGVITAINLLEELGAFEEDLDVVIYDVLGDVVCGGFAMPIREGY--AD-------EI  146 (278)
T ss_pred             eccCCceEEeecCCCCCCCCcccchHHHHHHHHHHhCCccccCCEEEEeccCceeecceeeehhccc--Cc-------EE
Confidence                11112223344443333333221 11122222222345699999974     56666776543  32       58


Q ss_pred             EEEEcCCCCcH---HHHHHHHHHHH-hCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCChh
Q psy14904        150 ILVIDLKIGCI---NNALLSLEAIN-SRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNIN  221 (233)
Q Consensus       150 llV~~~~~~~~---~~~~~~~~~l~-~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~~  221 (233)
                      .+|++.+..++   +.+...++... ..++++-|+|.|+-. -  +...+.++.+.+..|.|+++.||+++.+...
T Consensus       147 yIVtSge~MalYAANNI~kgi~k~a~~~~~rLgGiIcNsr~-~--~~e~e~v~~fa~~igt~li~~vPr~~ivq~a  219 (278)
T COG1348         147 YIVTSGEMMALYAANNIAKGIRKYAKTGGVRLGGIICNSRS-V--DRERELVEAFAERLGTQLIHFVPRDNIVQKA  219 (278)
T ss_pred             EEEecCchHHHHHHHHHHHHHHHHhhcCCcceeeEEecCCC-c--ccHHHHHHHHHHHhCCceEeeccchHHHHHH
Confidence            88998887654   55666665554 467889999999865 2  2335677888888999999999999977643

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=99.55  E-value=1.4e-13  Score=97.74  Aligned_cols=99  Identities=13%  Similarity=0.160  Sum_probs=72.3

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeecCC
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKYP   87 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (233)
                      +|.|.|.|||+||||++.+||.+++++|.+|+++|     .+.                          .          
T Consensus         1 ~i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d-----~d~--------------------------~----------   39 (104)
T cd02042           1 VIAVANQKGGVGKTTTAVNLAAALARRGKRVLLID-----LDP--------------------------Q----------   39 (104)
T ss_pred             CEEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEe-----CCC--------------------------C----------
Confidence            48899999999999999999999999999999998     110                          1          


Q ss_pred             CChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHH
Q psy14904         88 ISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSL  167 (233)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~  167 (233)
                                                   ||+||||+|++....      ...+.... ..++++++++..++..+...+
T Consensus        40 -----------------------------~d~viiD~p~~~~~~------~~~~l~~a-d~viv~~~~~~~s~~~~~~~~   83 (104)
T cd02042          40 -----------------------------YDYIIIDTPPSLGLL------TRNALAAA-DLVLIPVQPSPLDLDGLEKLL   83 (104)
T ss_pred             -----------------------------CCEEEEeCcCCCCHH------HHHHHHHC-CEEEEeccCCHHHHHHHHHHH
Confidence                                         999999999876421      11222222 367888888876666554444


Q ss_pred             H---HH--HhCCCcEEEEEEc
Q psy14904        168 E---AI--NSRGLKLIGWVAN  183 (233)
Q Consensus       168 ~---~l--~~~~~~i~GiVlN  183 (233)
                      +   ..  .+.+.++.|+|+|
T Consensus        84 ~~~~~~~~~~~~~~~~~vv~n  104 (104)
T cd02042          84 ETLILEDRLNPDLDILGILPT  104 (104)
T ss_pred             HHHHHHHhcCCCCceEEEEeC
Confidence            3   22  2456778999987

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=99.50  E-value=2.4e-12  Score=106.59  Aligned_cols=173  Identities=13%  Similarity=0.097  Sum_probs=95.3

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeee
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLF   84 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~   84 (233)
                      +.++|+++|. +|+||||++.+||.+++++|++|++++   ++....        .....+..+....     .+ ++..
T Consensus        71 ~~~vi~l~G~-~G~GKTTt~akLA~~l~~~g~~V~li~---~D~~r~--------~a~~ql~~~~~~~-----~i-~~~~  132 (272)
T TIGR00064        71 KPNVILFVGV-NGVGKTTTIAKLANKLKKQGKSVLLAA---GDTFRA--------AAIEQLEEWAKRL-----GV-DVIK  132 (272)
T ss_pred             CCeEEEEECC-CCCcHHHHHHHHHHHHHhcCCEEEEEe---CCCCCH--------HHHHHHHHHHHhC-----Ce-EEEe
Confidence            4678999975 999999999999999999999999998   433221        1222233332211     11 1111


Q ss_pred             cCCCChhhhhhhcCCCCCHHHHHHHHHH-hhcCCCeEEEeccCcccCccCCCCchHHHHH---H-------hCCCEEEEE
Q psy14904         85 KYPISPYTSSNLENRIINTSHIINCYNY-LSNLTDVIILEGIGGFSVPFHDNENSADLAE---K-------LGLPIILVI  153 (233)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~---~-------~~~~vllV~  153 (233)
                      ... .++..          ....+.++. ..++||+|||||||....   ......++..   .       ....+++|.
T Consensus       133 ~~~-~~dp~----------~~~~~~l~~~~~~~~D~ViIDT~G~~~~---d~~~~~el~~~~~~~~~~~~~~~~~~~LVl  198 (272)
T TIGR00064       133 QKE-GADPA----------AVAFDAIQKAKARNIDVVLIDTAGRLQN---KVNLMDELKKIKRVIKKVDKDAPDEVLLVL  198 (272)
T ss_pred             CCC-CCCHH----------HHHHHHHHHHHHCCCCEEEEeCCCCCcc---hHHHHHHHHHHHHHHhcccCCCCceEEEEE
Confidence            110 01110          122233333 347899999999987531   1111111111   1       134688999


Q ss_pred             cCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCC
Q psy14904        154 DLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLY  216 (233)
Q Consensus       154 ~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~  216 (233)
                      ++.. .-+......+..+  .+++.|+|+||++ .. ......+.... .++.|+. ++...+
T Consensus       199 ~a~~-~~~~~~~~~~f~~--~~~~~g~IlTKlD-e~-~~~G~~l~~~~-~~~~Pi~-~~~~Gq  254 (272)
T TIGR00064       199 DATT-GQNALEQAKVFNE--AVGLTGIILTKLD-GT-AKGGIILSIAY-ELKLPIK-FIGVGE  254 (272)
T ss_pred             ECCC-CHHHHHHHHHHHh--hCCCCEEEEEccC-CC-CCccHHHHHHH-HHCcCEE-EEeCCC
Confidence            9864 3333333333222  3467899999998 32 22234444444 4588886 444433

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B

Probab=99.45  E-value=6.9e-13  Score=111.51  Aligned_cols=67  Identities=15%  Similarity=0.165  Sum_probs=49.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchh-----------hhhhhHHHHHhhc-CCCceEecCCC
Q psy14904        148 PIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTL-----------FANENYIELTKYL-NVTPLGRIPYL  215 (233)
Q Consensus       148 ~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~-----------~~~~~~~~l~~~~-~~pvlg~IP~~  215 (233)
                      .+++|+.++..++.++......++..|+++-++|+||+- |...           .++..++.+++.+ +.|++ .||+.
T Consensus       209 ~~~lV~~pE~l~i~Et~r~~~~L~~~gi~v~~vVvNrvl-p~~~~~c~~~~~r~~~Q~~~l~~i~~~f~~~~v~-~vp~~  286 (305)
T PF02374_consen  209 SFRLVTNPEPLAIAETERLLTELKLYGIPVDAVVVNRVL-PEEEDDCPFCAARRKEQQKYLAEIEESFPDLPVV-KVPLL  286 (305)
T ss_dssp             EEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEEEE--TTCSTTSHHHHHHHHHHHHHHHHHHHHTTTSEEE-EEE--
T ss_pred             EEEEEecCCcchHHHHHHHHHHHHhcCCccCeEEEEccc-cccccchHHHHHHHHHHHHHHHHHHHHhcCCCEE-EecCC
Confidence            479999999889999999999999999999999999995 3211           2345567777766 57776 77775


Q ss_pred             C
Q psy14904        216 Y  216 (233)
Q Consensus       216 ~  216 (233)
                      +
T Consensus       287 ~  287 (305)
T PF02374_consen  287 P  287 (305)
T ss_dssp             S
T ss_pred             C
Confidence            5

...

>PRK10867 signal recognition particle protein; Provisional

Probab=99.44  E-value=1.1e-11  Score=108.35  Aligned_cols=165  Identities=18%  Similarity=0.200  Sum_probs=93.0

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHc-CCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKR-GISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLF   84 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~-G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~   84 (233)
                      ..+|+++|. +|+||||++.+||.+|+++ |++|++++   ++....        ...+.++.+...     ..+ ++ +
T Consensus       100 p~vI~~vG~-~GsGKTTtaakLA~~l~~~~G~kV~lV~---~D~~R~--------aa~eQL~~~a~~-----~gv-~v-~  160 (433)
T PRK10867        100 PTVIMMVGL-QGAGKTTTAGKLAKYLKKKKKKKVLLVA---ADVYRP--------AAIEQLKTLGEQ-----IGV-PV-F  160 (433)
T ss_pred             CEEEEEECC-CCCcHHHHHHHHHHHHHHhcCCcEEEEE---ccccch--------HHHHHHHHHHhh-----cCC-eE-E
Confidence            457888876 9999999999999999998 99999998   443321        122233332211     011 11 1


Q ss_pred             cCCCChhhhhhhcCCCCCHHH-HHHHHHHh-hcCCCeEEEeccCcccCccCCCCchHH---HHHH-hCCCEEEEEcCCCC
Q psy14904         85 KYPISPYTSSNLENRIINTSH-IINCYNYL-SNLTDVIILEGIGGFSVPFHDNENSAD---LAEK-LGLPIILVIDLKIG  158 (233)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~-l~~~~~~l-~~~~D~vlID~~~g~~~p~~~~~~~~~---l~~~-~~~~vllV~~~~~~  158 (233)
                      ..+..           .+... ..+.++.. ..+||+|||||||....  .. ....+   +... .-..+++|.++..+
T Consensus       161 ~~~~~-----------~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~--d~-~lm~eL~~i~~~v~p~evllVlda~~g  226 (433)
T PRK10867        161 PSGDG-----------QDPVDIAKAALEEAKENGYDVVIVDTAGRLHI--DE-ELMDELKAIKAAVNPDEILLVVDAMTG  226 (433)
T ss_pred             ecCCC-----------CCHHHHHHHHHHHHHhcCCCEEEEeCCCCccc--CH-HHHHHHHHHHHhhCCCeEEEEEecccH
Confidence            11000           01112 23344433 35799999999987531  10 01111   1111 12468899987432


Q ss_pred             cHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904        159 CINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL  209 (233)
Q Consensus       159 ~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl  209 (233)
                        .++....+.+.+ .+++-|+|+|+.+ ... . ....-.+...+++|+.
T Consensus       227 --q~av~~a~~F~~-~~~i~giIlTKlD-~~~-r-gG~alsi~~~~~~PI~  271 (433)
T PRK10867        227 --QDAVNTAKAFNE-ALGLTGVILTKLD-GDA-R-GGAALSIRAVTGKPIK  271 (433)
T ss_pred             --HHHHHHHHHHHh-hCCCCEEEEeCcc-Ccc-c-ccHHHHHHHHHCcCEE
Confidence              334444444443 5788999999998 432 1 2233344456688875

>TIGR00959 ffh signal recognition particle protein

Probab=99.43  E-value=1.5e-11  Score=107.46  Aligned_cols=165  Identities=21%  Similarity=0.246  Sum_probs=90.1

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHH-HcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeec
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFK-KRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFK   85 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~-~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~   85 (233)
                      .+++++|. +|+||||++.+||.+|+ ++|++|++++   ++...    +    ...+.+..+... .    .+..+...
T Consensus       100 ~vi~~vG~-~GsGKTTtaakLA~~l~~~~g~kV~lV~---~D~~R----~----~a~~QL~~~a~~-~----gvp~~~~~  162 (428)
T TIGR00959       100 TVILMVGL-QGSGKTTTCGKLAYYLKKKQGKKVLLVA---CDLYR----P----AAIEQLKVLGQQ-V----GVPVFALG  162 (428)
T ss_pred             EEEEEECC-CCCcHHHHHHHHHHHHHHhCCCeEEEEe---ccccc----h----HHHHHHHHHHHh-c----CCceEecC
Confidence            35556655 99999999999999987 6899999998   44332    1    112222222210 0    01111111


Q ss_pred             CCCChhhhhhhcCCCCCHHHHHHHHHHh-hcCCCeEEEeccCcccCccCCCCchHHH---HHHh-CCCEEEEEcCCCCcH
Q psy14904         86 YPISPYTSSNLENRIINTSHIINCYNYL-SNLTDVIILEGIGGFSVPFHDNENSADL---AEKL-GLPIILVIDLKIGCI  160 (233)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l-~~~~D~vlID~~~g~~~p~~~~~~~~~l---~~~~-~~~vllV~~~~~~~~  160 (233)
                      .+..|            .+...+.++.. .++||+|||||||....   +.....++   .... ...+++|.++..+  
T Consensus       163 ~~~~P------------~~i~~~al~~~~~~~~DvVIIDTaGr~~~---d~~l~~eL~~i~~~~~p~e~lLVvda~tg--  225 (428)
T TIGR00959       163 KGQSP------------VEIARRALEYAKENGFDVVIVDTAGRLQI---DEELMEELAAIKEILNPDEILLVVDAMTG--  225 (428)
T ss_pred             CCCCH------------HHHHHHHHHHHHhcCCCEEEEeCCCcccc---CHHHHHHHHHHHHhhCCceEEEEEeccch--
Confidence            10111            01123444443 46899999999987531   11111222   1111 3468899987532  


Q ss_pred             HHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904        161 NNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL  209 (233)
Q Consensus       161 ~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl  209 (233)
                      .++....+.+. ..+++.|+|+|+.+ ... . ......+...+++|+.
T Consensus       226 q~~~~~a~~f~-~~v~i~giIlTKlD-~~~-~-~G~~lsi~~~~~~PI~  270 (428)
T TIGR00959       226 QDAVNTAKTFN-ERLGLTGVVLTKLD-GDA-R-GGAALSVRSVTGKPIK  270 (428)
T ss_pred             HHHHHHHHHHH-hhCCCCEEEEeCcc-Ccc-c-ccHHHHHHHHHCcCEE
Confidence            33444444433 34678899999998 432 1 2334444556788886

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=99.41  E-value=1.5e-11  Score=106.95  Aligned_cols=169  Identities=14%  Similarity=0.145  Sum_probs=96.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeec
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFK   85 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~   85 (233)
                      ..+|+++|. +|+||||++..||.+|+++|++|++++   ++++..        ...++++.+....     .+ |+...
T Consensus       100 ~~vi~lvG~-~GvGKTTtaaKLA~~l~~~G~kV~lV~---~D~~R~--------aA~eQLk~~a~~~-----~v-p~~~~  161 (429)
T TIGR01425       100 QNVIMFVGL-QGSGKTTTCTKLAYYYQRKGFKPCLVC---ADTFRA--------GAFDQLKQNATKA-----RI-PFYGS  161 (429)
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHHHHHHCCCCEEEEc---Ccccch--------hHHHHHHHHhhcc-----CC-eEEee
Confidence            468899997 999999999999999999999999997   433321        2444555443211     11 21111


Q ss_pred             CCCChhhhhhhcCCCCC-HHHHHHHHHHhh-cCCCeEEEeccCcccCccCCCCchHHHHH---Hh-CCCEEEEEcCCCCc
Q psy14904         86 YPISPYTSSNLENRIIN-TSHIINCYNYLS-NLTDVIILEGIGGFSVPFHDNENSADLAE---KL-GLPIILVIDLKIGC  159 (233)
Q Consensus        86 ~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~-~~~D~vlID~~~g~~~p~~~~~~~~~l~~---~~-~~~vllV~~~~~~~  159 (233)
                      .. .           .+ .....+.+++++ ++||+|||||||....   ......++..   .. ...+++|.++..+.
T Consensus       162 ~~-~-----------~dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~---d~~lm~El~~i~~~~~p~e~lLVlda~~Gq  226 (429)
T TIGR01425       162 YT-E-----------SDPVKIASEGVEKFKKENFDIIIVDTSGRHKQ---EDSLFEEMLQVAEAIQPDNIIFVMDGSIGQ  226 (429)
T ss_pred             cC-C-----------CCHHHHHHHHHHHHHhCCCCEEEEECCCCCcc---hHHHHHHHHHHhhhcCCcEEEEEeccccCh
Confidence            00 0           01 122344555554 4899999999987532   1112222222   11 13588999876431


Q ss_pred             HHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCC
Q psy14904        160 INNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPY  214 (233)
Q Consensus       160 ~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~  214 (233)
                        ++....+.+. ..+++-|+|+||.+ ... .....+.... .++.|+. +|..
T Consensus       227 --~a~~~a~~F~-~~~~~~g~IlTKlD-~~a-rgG~aLs~~~-~t~~PI~-fig~  274 (429)
T TIGR01425       227 --AAEAQAKAFK-DSVDVGSVIITKLD-GHA-KGGGALSAVA-ATKSPII-FIGT  274 (429)
T ss_pred             --hHHHHHHHHH-hccCCcEEEEECcc-CCC-CccHHhhhHH-HHCCCeE-EEcC
Confidence              2233334443 23578999999999 422 2223333333 4577775 4443

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=99.40  E-value=5.2e-11  Score=100.59  Aligned_cols=167  Identities=13%  Similarity=0.151  Sum_probs=92.7

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeee
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLF   84 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~   84 (233)
                      ..++|+++|. +|+||||++.+||..++.+|++|++++   .+.+..        .....+..+...     ..+ ++..
T Consensus       113 ~~~vi~lvGp-nGsGKTTt~~kLA~~l~~~g~~V~Li~---~D~~r~--------~a~eql~~~a~~-----~~i-~~~~  174 (318)
T PRK10416        113 KPFVILVVGV-NGVGKTTTIGKLAHKYKAQGKKVLLAA---GDTFRA--------AAIEQLQVWGER-----VGV-PVIA  174 (318)
T ss_pred             CCeEEEEECC-CCCcHHHHHHHHHHHHHhcCCeEEEEe---cCccch--------hhHHHHHHHHHH-----cCc-eEEE
Confidence            3568999996 999999999999999999999999987   333321        111222222110     011 1111


Q ss_pred             cCCCChhhhhhhcCCCCCHHHHHHHHH-HhhcCCCeEEEeccCcccCccCCCCchHHHHHH----------hCCCEEEEE
Q psy14904         85 KYPISPYTSSNLENRIINTSHIINCYN-YLSNLTDVIILEGIGGFSVPFHDNENSADLAEK----------LGLPIILVI  153 (233)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~----------~~~~vllV~  153 (233)
                      .. .....+          ....+.+. ...++||+|||||||....   ......++.+.          ....+++|.
T Consensus       175 ~~-~~~dpa----------~~v~~~l~~~~~~~~D~ViIDTaGr~~~---~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl  240 (318)
T PRK10416        175 QK-EGADPA----------SVAFDAIQAAKARGIDVLIIDTAGRLHN---KTNLMEELKKIKRVIKKADPDAPHEVLLVL  240 (318)
T ss_pred             eC-CCCCHH----------HHHHHHHHHHHhCCCCEEEEeCCCCCcC---CHHHHHHHHHHHHHHhhhcCCCCceEEEEE
Confidence            10 011110          11222332 3457899999999987532   11111222211          123478888


Q ss_pred             cCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904        154 DLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL  209 (233)
Q Consensus       154 ~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl  209 (233)
                      ++.. ..+......+..  ..+++-|+|+||.+ .. ......+..+. .+++|+.
T Consensus       241 ~a~~-g~~~~~~a~~f~--~~~~~~giIlTKlD-~t-~~~G~~l~~~~-~~~~Pi~  290 (318)
T PRK10416        241 DATT-GQNALSQAKAFH--EAVGLTGIILTKLD-GT-AKGGVVFAIAD-ELGIPIK  290 (318)
T ss_pred             ECCC-ChHHHHHHHHHH--hhCCCCEEEEECCC-CC-CCccHHHHHHH-HHCCCEE
Confidence            8874 333333332222  33577899999998 32 23334455554 4588886

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=99.37  E-value=4.5e-11  Score=102.26  Aligned_cols=174  Identities=11%  Similarity=0.120  Sum_probs=104.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeec
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFK   85 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~   85 (233)
                      .++|++.|. +|+||||++..||..|..+|++|++++   ++++..        .....++.+....     .+ |+...
T Consensus       241 ~~vI~LVGp-tGvGKTTTiaKLA~~L~~~GkkVglI~---aDt~Ri--------aAvEQLk~yae~l-----gi-pv~v~  302 (436)
T PRK11889        241 VQTIALIGP-TGVGKTTTLAKMAWQFHGKKKTVGFIT---TDHSRI--------GTVQQLQDYVKTI-----GF-EVIAV  302 (436)
T ss_pred             CcEEEEECC-CCCcHHHHHHHHHHHHHHcCCcEEEEe---cCCcch--------HHHHHHHHHhhhc-----CC-cEEec
Confidence            368999999 999999999999999999999999998   433321        1223333332210     11 11110


Q ss_pred             CCCChhhhhhhcCCCCCHHHHHHHHHHhhc--CCCeEEEeccCcccCccCCCCchHHHHHHh----CCCEEEEEcCCCCc
Q psy14904         86 YPISPYTSSNLENRIINTSHIINCYNYLSN--LTDVIILEGIGGFSVPFHDNENSADLAEKL----GLPIILVIDLKIGC  159 (233)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~--~~D~vlID~~~g~~~p~~~~~~~~~l~~~~----~~~vllV~~~~~~~  159 (233)
                                     .+...+.+.++.+++  +||+|||||+|....   ......++....    ...+++|.++.. .
T Consensus       303 ---------------~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~k---d~~lm~EL~~~lk~~~PdevlLVLsATt-k  363 (436)
T PRK11889        303 ---------------RDEAAMTRALTYFKEEARVDYILIDTAGKNYR---ASETVEEMIETMGQVEPDYICLTLSASM-K  363 (436)
T ss_pred             ---------------CCHHHHHHHHHHHHhccCCCEEEEeCccccCc---CHHHHHHHHHHHhhcCCCeEEEEECCcc-C
Confidence                           123456677777764  699999999987532   111223332221    134788877653 2


Q ss_pred             HHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce--Ee---cCCCCCCChh
Q psy14904        160 INNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL--GR---IPYLYNLNIN  221 (233)
Q Consensus       160 ~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl--g~---IP~~~~l~~~  221 (233)
                      -+++...++.++.  +++-|+|++|.+ .. ......+..+. .++.|+.  +.   ||+|-....+
T Consensus       364 ~~d~~~i~~~F~~--~~idglI~TKLD-ET-~k~G~iLni~~-~~~lPIsyit~GQ~VPeDI~~A~~  425 (436)
T PRK11889        364 SKDMIEIITNFKD--IHIDGIVFTKFD-ET-ASSGELLKIPA-VSSAPIVLMTDGQDVKKNIHIATA  425 (436)
T ss_pred             hHHHHHHHHHhcC--CCCCEEEEEccc-CC-CCccHHHHHHH-HHCcCEEEEeCCCCCCcchhhCCH
Confidence            2344455555543  678899999999 32 23334455444 3577765  32   7777655543

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=99.36  E-value=1.7e-10  Score=89.29  Aligned_cols=166  Identities=15%  Similarity=0.156  Sum_probs=88.4

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeecCC
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKYP   87 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (233)
                      ++.++|. +|+||||++.+|+..++++|++|++++   ++...    +    .....+..+...     ..+. + ...+
T Consensus         2 ~~~~~G~-~G~GKTt~~~~la~~~~~~g~~v~~i~---~D~~~----~----~~~~~l~~~~~~-----~~~~-~-~~~~   62 (173)
T cd03115           2 VILLVGL-QGVGKTTTAAKLALYLKKKGKKVLLVA---ADTYR----P----AAIEQLRVLGEQ-----VGVP-V-FEEG   62 (173)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHHHCCCcEEEEE---cCCCC----h----HHHHHHHHhccc-----CCeE-E-EecC
Confidence            4566666 999999999999999999999999998   43321    1    112223222211     0111 1 1110


Q ss_pred             CChhhhhhhcCCCCCHHHHHHHHHH-hhcCCCeEEEeccCcccCccCCCCc-hHHHHH-HhCCCEEEEEcCCCCcHHHHH
Q psy14904         88 ISPYTSSNLENRIINTSHIINCYNY-LSNLTDVIILEGIGGFSVPFHDNEN-SADLAE-KLGLPIILVIDLKIGCINNAL  164 (233)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~l~~~~~~-l~~~~D~vlID~~~g~~~p~~~~~~-~~~l~~-~~~~~vllV~~~~~~~~~~~~  164 (233)
                      ....+          .+.+.+.+++ ...+||+||||++|.....- ..+. ...+.. .....+++|.++.. . .+..
T Consensus        63 ~~~~~----------~~~~~~~~~~~~~~~~d~viiDt~g~~~~~~-~~l~~l~~l~~~~~~~~~~lVv~~~~-~-~~~~  129 (173)
T cd03115          63 EGKDP----------VSIAKRAIEHAREENFDVVIVDTAGRLQIDE-NLMEELKKIKRVVKPDEVLLVVDAMT-G-QDAV  129 (173)
T ss_pred             CCCCH----------HHHHHHHHHHHHhCCCCEEEEECcccchhhH-HHHHHHHHHHhhcCCCeEEEEEECCC-C-hHHH
Confidence            00000          1122334433 34689999999987642100 0000 011111 12457888998753 2 2233


Q ss_pred             HHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904        165 LSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL  209 (233)
Q Consensus       165 ~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl  209 (233)
                      .....+.+ ..++.|+|+||++ ... .....+. +....++|+.
T Consensus       130 ~~~~~~~~-~~~~~~viltk~D-~~~-~~g~~~~-~~~~~~~p~~  170 (173)
T cd03115         130 NQAKAFNE-ALGITGVILTKLD-GDA-RGGAALS-IRAVTGKPIK  170 (173)
T ss_pred             HHHHHHHh-hCCCCEEEEECCc-CCC-Ccchhhh-hHHHHCcCeE
Confidence            33333321 2336899999998 322 2334455 5556788885

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=99.34  E-value=1.3e-10  Score=99.05  Aligned_cols=168  Identities=13%  Similarity=0.187  Sum_probs=99.1

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeec
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFK   85 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~   85 (233)
                      .++++++|+ +|+||||++.+||..+.++|++|++++   .+++..        .....++.+....     .+ |+...
T Consensus       206 ~~ii~lvGp-tGvGKTTt~akLA~~l~~~g~~V~lIt---aDtyR~--------gAveQLk~yae~l-----gv-pv~~~  267 (407)
T PRK12726        206 HRIISLIGQ-TGVGKTTTLVKLGWQLLKQNRTVGFIT---TDTFRS--------GAVEQFQGYADKL-----DV-ELIVA  267 (407)
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHHHHHHcCCeEEEEe---CCccCc--------cHHHHHHHHhhcC-----CC-CEEec
Confidence            568999998 699999999999999999999999998   444321        1233444443311     11 11111


Q ss_pred             CCCChhhhhhhcCCCCCHHHHHHHHHHhh--cCCCeEEEeccCcccCccCCCCchHHHHHHh---C-CCEEEEEcCCCCc
Q psy14904         86 YPISPYTSSNLENRIINTSHIINCYNYLS--NLTDVIILEGIGGFSVPFHDNENSADLAEKL---G-LPIILVIDLKIGC  159 (233)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~--~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~---~-~~vllV~~~~~~~  159 (233)
                                     .+...+.+.++.++  ++||+|||||||....   ......++....   . ..+++|.++.. .
T Consensus       268 ---------------~dp~dL~~al~~l~~~~~~D~VLIDTAGr~~~---d~~~l~EL~~l~~~~~p~~~~LVLsag~-~  328 (407)
T PRK12726        268 ---------------TSPAELEEAVQYMTYVNCVDHILIDTVGRNYL---AEESVSEISAYTDVVHPDLTCFTFSSGM-K  328 (407)
T ss_pred             ---------------CCHHHHHHHHHHHHhcCCCCEEEEECCCCCcc---CHHHHHHHHHHhhccCCceEEEECCCcc-c
Confidence                           12345677777775  6899999999987531   111222222211   1 12456665543 2


Q ss_pred             HHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce--Ee---cCCC
Q psy14904        160 INNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL--GR---IPYL  215 (233)
Q Consensus       160 ~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl--g~---IP~~  215 (233)
                      ..++....+..  ..+++-|+|++|.+ .. ......+.... .++.|+.  +.   ||++
T Consensus       329 ~~d~~~i~~~f--~~l~i~glI~TKLD-ET-~~~G~~Lsv~~-~tglPIsylt~GQ~VpdD  384 (407)
T PRK12726        329 SADVMTILPKL--AEIPIDGFIITKMD-ET-TRIGDLYTVMQ-ETNLPVLYMTDGQNITEN  384 (407)
T ss_pred             HHHHHHHHHhc--CcCCCCEEEEEccc-CC-CCccHHHHHHH-HHCCCEEEEecCCCCCcc
Confidence            23333333332  35778899999999 32 23344455444 3577765  32   6763

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=99.32  E-value=1.7e-10  Score=98.81  Aligned_cols=178  Identities=19%  Similarity=0.221  Sum_probs=103.1

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeec
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFK   85 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~   85 (233)
                      ..+|+++|- .|+||||+|.-||.+|.++|++|+++-   ++...        +...+.++.... ..    .+ ++ |.
T Consensus       100 P~vImmvGL-QGsGKTTt~~KLA~~lkk~~~kvllVa---aD~~R--------pAA~eQL~~La~-q~----~v-~~-f~  160 (451)
T COG0541         100 PTVILMVGL-QGSGKTTTAGKLAKYLKKKGKKVLLVA---ADTYR--------PAAIEQLKQLAE-QV----GV-PF-FG  160 (451)
T ss_pred             CeEEEEEec-cCCChHhHHHHHHHHHHHcCCceEEEe---cccCC--------hHHHHHHHHHHH-Hc----CC-ce-ec
Confidence            457999998 999999999999999999999999985   33322        123334444321 00    11 11 22


Q ss_pred             CCCChhhhhhhcCCCCC-HHHHHHHHHHhh-cCCCeEEEeccCcccCccCCCCchHHHHH---Hh-CCCEEEEEcCCCCc
Q psy14904         86 YPISPYTSSNLENRIIN-TSHIINCYNYLS-NLTDVIILEGIGGFSVPFHDNENSADLAE---KL-GLPIILVIDLKIGC  159 (233)
Q Consensus        86 ~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~-~~~D~vlID~~~g~~~p~~~~~~~~~l~~---~~-~~~vllV~~~~~~~  159 (233)
                      ...           ..+ .+-.++.+++.+ +.||+|||||+|.+..   +.....++..   .. -..+++|+++..+.
T Consensus       161 ~~~-----------~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~i---de~Lm~El~~Ik~~~~P~E~llVvDam~GQ  226 (451)
T COG0541         161 SGT-----------EKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHI---DEELMDELKEIKEVINPDETLLVVDAMIGQ  226 (451)
T ss_pred             CCC-----------CCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccc---cHHHHHHHHHHHhhcCCCeEEEEEecccch
Confidence            110           011 123466676655 4699999999988742   1112222221   11 24799999987542


Q ss_pred             HHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCC--ceEe---cCCCCCCChhh
Q psy14904        160 INNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVT--PLGR---IPYLYNLNINL  222 (233)
Q Consensus       160 ~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~p--vlg~---IP~~~~l~~~~  222 (233)
                        ++....+.+ +..+.+-|+|+++.+ .+.+-  ...-.++..+|.|  ++|+   |...+.++..-
T Consensus       227 --dA~~~A~aF-~e~l~itGvIlTKlD-GdaRG--GaALS~~~~tg~PIkFiGtGEki~dLE~F~P~R  288 (451)
T COG0541         227 --DAVNTAKAF-NEALGITGVILTKLD-GDARG--GAALSARAITGKPIKFIGTGEKIDDLEPFHPDR  288 (451)
T ss_pred             --HHHHHHHHH-hhhcCCceEEEEccc-CCCcc--hHHHhhHHHHCCCeEEEecCCCcccCCCcChHH
Confidence              233344443 345788999999999 43221  1222233345655  4454   55555555443

>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D

Probab=99.32  E-value=3.1e-12  Score=97.28  Aligned_cols=140  Identities=19%  Similarity=0.165  Sum_probs=74.1

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccch-H-HHHHHHH-hCCC----cccccce
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNE-D-VNLLNKY-SNSL----YEFTKLI   79 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~-d-~~~~~~~-~~~~----~~~~~~~   79 (233)
                      |+|+|+|.+||+||||+|.+||..|+++|++|+++|-....+.... ..+.... + ..++... .+..    ....+.+
T Consensus         1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~   79 (157)
T PF13614_consen    1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFSPSLSR-LLGIEPERGLSDLLYDKKSGDENLSERDLSDHI   79 (157)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-HHHH-HTTSSSSSSHHHHHTTSHC--C-HHHSHHHHHC
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccc-ccccccccchhhHhcCccccccchhhhhHHHHh
Confidence            6899999999999999999999999999999999983221111000 0000000 0 0111110 0000    0000000


Q ss_pred             e-----ee-eecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEE
Q psy14904         80 N-----PY-LFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVI  153 (233)
Q Consensus        80 ~-----~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~  153 (233)
                      .     .. .+..+.......     ....+.+.+.++.+++.||+||||+++.+..+     ....++... ..+++|+
T Consensus        80 ~~~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~li~~l~~~yd~IivD~~~~~~~~-----~~~~~l~~~-D~ii~v~  148 (157)
T PF13614_consen   80 YSDAHDGLDLLPPPSSPEDLE-----ELTPEDVEELIDALKEHYDYIIVDLPSSLSNP-----DTQAVLELA-DKIILVV  148 (157)
T ss_dssp             EEESSTTEEEE--SSSSHHHH-----HHTSHHHHHHHHHHHHHSSEEEEEEESTTTHT-----HHHHHHTTH-SEEEEEE
T ss_pred             eeccCCCeEEecCCCCCCchh-----hcCHHHHHHHHHHHHHcCCEEEEECcCCccHH-----HHHHHHHHC-CEEEEEE
Confidence            0     00 111111111111     12456788889999999999999998765421     111233333 4788888


Q ss_pred             cCCCC
Q psy14904        154 DLKIG  158 (233)
Q Consensus       154 ~~~~~  158 (233)
                      .++..
T Consensus       149 ~~~~~  153 (157)
T PF13614_consen  149 RPDVT  153 (157)
T ss_dssp             ETTHH
T ss_pred             CCCcc
Confidence            88753

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=99.31  E-value=2.4e-10  Score=100.13  Aligned_cols=164  Identities=16%  Similarity=0.217  Sum_probs=92.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeec
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFK   85 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~   85 (233)
                      ..+|+++|. +|+||||++.+||.+|+++|++|++++   ++...    +    ...+.++.+... .    .+ |+ +.
T Consensus        95 p~vI~lvG~-~GsGKTTtaakLA~~L~~~g~kV~lV~---~D~~R----~----aa~eQL~~la~~-~----gv-p~-~~  155 (437)
T PRK00771         95 PQTIMLVGL-QGSGKTTTAAKLARYFKKKGLKVGLVA---ADTYR----P----AAYDQLKQLAEK-I----GV-PF-YG  155 (437)
T ss_pred             CeEEEEECC-CCCcHHHHHHHHHHHHHHcCCeEEEec---CCCCC----H----HHHHHHHHHHHH-c----CC-cE-Ee
Confidence            457888887 999999999999999999999999997   33321    1    112223322210 0    01 11 11


Q ss_pred             CCCChhhhhhhcCCCCC-HHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchH---HHH-HHhCCCEEEEEcCCCCcH
Q psy14904         86 YPISPYTSSNLENRIIN-TSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSA---DLA-EKLGLPIILVIDLKIGCI  160 (233)
Q Consensus        86 ~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~---~l~-~~~~~~vllV~~~~~~~~  160 (233)
                      .+..           .+ .+.+.+.++++. ++|+|||||||.....  .. ...   .+. ......+++|.++..+  
T Consensus       156 ~~~~-----------~d~~~i~~~al~~~~-~~DvVIIDTAGr~~~d--~~-lm~El~~l~~~~~pdevlLVvda~~g--  218 (437)
T PRK00771        156 DPDN-----------KDAVEIAKEGLEKFK-KADVIIVDTAGRHALE--ED-LIEEMKEIKEAVKPDEVLLVIDATIG--  218 (437)
T ss_pred             cCCc-----------cCHHHHHHHHHHHhh-cCCEEEEECCCcccch--HH-HHHHHHHHHHHhcccceeEEEecccc--
Confidence            1000           11 123456666654 5799999999875321  00 111   111 1112468889888664  


Q ss_pred             HHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904        161 NNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL  209 (233)
Q Consensus       161 ~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl  209 (233)
                      .++....+.+ +..+++.|+|+||++ ... ..-..+.... .++.|+.
T Consensus       219 q~av~~a~~F-~~~l~i~gvIlTKlD-~~a-~~G~~ls~~~-~~~~Pi~  263 (437)
T PRK00771        219 QQAKNQAKAF-HEAVGIGGIIITKLD-GTA-KGGGALSAVA-ETGAPIK  263 (437)
T ss_pred             HHHHHHHHHH-HhcCCCCEEEEeccc-CCC-cccHHHHHHH-HHCcCEE
Confidence            2333334433 234778999999999 432 2233344333 4577775

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.30  E-value=1.5e-10  Score=91.31  Aligned_cols=175  Identities=15%  Similarity=0.129  Sum_probs=96.6

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeecC
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKY   86 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~   86 (233)
                      ++|++.|+ +||||||+++.||.++..+|++|+++-   .+...        ....+.++.+...-     .+ |+....
T Consensus         2 ~vi~lvGp-tGvGKTTt~aKLAa~~~~~~~~v~lis---~D~~R--------~ga~eQL~~~a~~l-----~v-p~~~~~   63 (196)
T PF00448_consen    2 KVIALVGP-TGVGKTTTIAKLAARLKLKGKKVALIS---ADTYR--------IGAVEQLKTYAEIL-----GV-PFYVAR   63 (196)
T ss_dssp             EEEEEEES-TTSSHHHHHHHHHHHHHHTT--EEEEE---ESTSS--------THHHHHHHHHHHHH-----TE-EEEESS
T ss_pred             EEEEEECC-CCCchHhHHHHHHHHHhhccccceeec---CCCCC--------ccHHHHHHHHHHHh-----cc-ccchhh
Confidence            68999999 999999999999999999999999985   22221        12334444443210     01 111110


Q ss_pred             CCChhhhhhhcCCCCC-HHHHHHHHHHhh-cCCCeEEEeccCcccCccCCCCchHHHHHHh-CCCEEEEEcCCCCcHHHH
Q psy14904         87 PISPYTSSNLENRIIN-TSHIINCYNYLS-NLTDVIILEGIGGFSVPFHDNENSADLAEKL-GLPIILVIDLKIGCINNA  163 (233)
Q Consensus        87 ~~~~~~~~~~~~~~~~-~~~l~~~~~~l~-~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~-~~~vllV~~~~~~~~~~~  163 (233)
                                  ...+ .+.+.+.+++.+ ++||+||||++|....-.........+.... ...+++|.++..+. ++.
T Consensus        64 ------------~~~~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~-~~~  130 (196)
T PF00448_consen   64 ------------TESDPAEIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ-EDL  130 (196)
T ss_dssp             ------------TTSCHHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG-HHH
T ss_pred             ------------cchhhHHHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh-HHH
Confidence                        0011 133556666654 5799999999875421000000111222222 45688898887643 323


Q ss_pred             HHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCC
Q psy14904        164 LLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNL  218 (233)
Q Consensus       164 ~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l  218 (233)
                      ....+..+.  .++-|+|++|.+ .. ......+..+.+ .+.|+- +|-..+++
T Consensus       131 ~~~~~~~~~--~~~~~lIlTKlD-et-~~~G~~l~~~~~-~~~Pi~-~it~Gq~V  179 (196)
T PF00448_consen  131 EQALAFYEA--FGIDGLILTKLD-ET-ARLGALLSLAYE-SGLPIS-YITTGQRV  179 (196)
T ss_dssp             HHHHHHHHH--SSTCEEEEESTT-SS-STTHHHHHHHHH-HTSEEE-EEESSSST
T ss_pred             HHHHHHhhc--ccCceEEEEeec-CC-CCcccceeHHHH-hCCCeE-EEECCCCh
Confidence            333333333  345699999999 32 223345555553 578874 55555554

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=99.24  E-value=7.8e-10  Score=95.57  Aligned_cols=161  Identities=11%  Similarity=0.074  Sum_probs=94.9

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHH----cCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKK----RGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINP   81 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~----~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~   81 (233)
                      .++|++.|. +|+||||++..||..+..    +|++|+++.   .++...        ...++++.+....     .+ |
T Consensus       174 ~~vi~lvGp-tGvGKTTT~aKLA~~~~~~~~~~g~~V~lit---~Dt~R~--------aa~eQL~~~a~~l-----gv-p  235 (388)
T PRK12723        174 KRVFILVGP-TGVGKTTTIAKLAAIYGINSDDKSLNIKIIT---IDNYRI--------GAKKQIQTYGDIM-----GI-P  235 (388)
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHHHHHhhhccCCCeEEEEe---ccCccH--------HHHHHHHHHhhcC-----Cc-c
Confidence            357778877 799999999999999874    589999987   433321        2333444443211     01 1


Q ss_pred             eeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHH---HHHh--CCCEEEEEcCC
Q psy14904         82 YLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADL---AEKL--GLPIILVIDLK  156 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l---~~~~--~~~vllV~~~~  156 (233)
                      +...               ...+.+.+.+.++ .+||+||||++|....   ......++   ....  ...+++|.++.
T Consensus       236 v~~~---------------~~~~~l~~~L~~~-~~~DlVLIDTaGr~~~---~~~~l~el~~~l~~~~~~~e~~LVlsat  296 (388)
T PRK12723        236 VKAI---------------ESFKDLKEEITQS-KDFDLVLVDTIGKSPK---DFMKLAEMKELLNACGRDAEFHLAVSST  296 (388)
T ss_pred             eEee---------------CcHHHHHHHHHHh-CCCCEEEEcCCCCCcc---CHHHHHHHHHHHHhcCCCCeEEEEEcCC
Confidence            1111               1234566667666 6899999999987532   11111222   2222  23588898887


Q ss_pred             CCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904        157 IGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL  209 (233)
Q Consensus       157 ~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl  209 (233)
                      .+ .+++....+..  ..+++-|+|++|.+ . +......+..+. ..+.|+.
T Consensus       297 ~~-~~~~~~~~~~~--~~~~~~~~I~TKlD-e-t~~~G~~l~~~~-~~~~Pi~  343 (388)
T PRK12723        297 TK-TSDVKEIFHQF--SPFSYKTVIFTKLD-E-TTCVGNLISLIY-EMRKEVS  343 (388)
T ss_pred             CC-HHHHHHHHHHh--cCCCCCEEEEEecc-C-CCcchHHHHHHH-HHCCCEE
Confidence            64 33333333333  24667899999999 3 223344455444 3477775

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=99.22  E-value=5.1e-10  Score=98.19  Aligned_cols=164  Identities=16%  Similarity=0.100  Sum_probs=92.4

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHH--HcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFK--KRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYL   83 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~--~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~   83 (233)
                      .++++++|+ +||||||++++||.+++  +.|++|++++   .+++..        .....+..+....     .+ |+.
T Consensus       221 ~~~i~~vGp-tGvGKTTt~~kLA~~~~~~~~g~~V~li~---~D~~r~--------~a~eqL~~~a~~~-----~v-p~~  282 (424)
T PRK05703        221 GGVVALVGP-TGVGKTTTLAKLAARYALLYGKKKVALIT---LDTYRI--------GAVEQLKTYAKIM-----GI-PVE  282 (424)
T ss_pred             CcEEEEECC-CCCCHHHHHHHHHHHHHHhcCCCeEEEEE---CCccHH--------HHHHHHHHHHHHh-----CC-ceE
Confidence            358899988 99999999999999998  4689999998   433311        1112233222110     01 111


Q ss_pred             ecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHH--hCCCEEEEEcCCCCcHH
Q psy14904         84 FKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEK--LGLPIILVIDLKIGCIN  161 (233)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~--~~~~vllV~~~~~~~~~  161 (233)
                      ..               .....+.+.++++. +||+||||++|..............+...  ....+.+|.++..+ ..
T Consensus       283 ~~---------------~~~~~l~~~l~~~~-~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~-~~  345 (424)
T PRK05703        283 VV---------------YDPKELAKALEQLR-DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK-YE  345 (424)
T ss_pred             cc---------------CCHHhHHHHHHHhC-CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC-HH
Confidence            10               01234566666654 79999999987642110000011222221  12356777776543 23


Q ss_pred             HHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904        162 NALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL  209 (233)
Q Consensus       162 ~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl  209 (233)
                      ++....+.++.  +.+-++|+++++ .. ......+..+.+ .+.|+.
T Consensus       346 ~l~~~~~~f~~--~~~~~vI~TKlD-et-~~~G~i~~~~~~-~~lPv~  388 (424)
T PRK05703        346 DLKDIYKHFSR--LPLDGLIFTKLD-ET-SSLGSILSLLIE-SGLPIS  388 (424)
T ss_pred             HHHHHHHHhCC--CCCCEEEEeccc-cc-ccccHHHHHHHH-HCCCEE
Confidence            34444555543  345699999999 42 333455555553 478876

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=99.22  E-value=7.2e-10  Score=95.88  Aligned_cols=171  Identities=14%  Similarity=0.167  Sum_probs=95.8

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHH-HHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeec
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEF-KKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFK   85 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l-~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~   85 (233)
                      ++++++|. +|+||||++.+||..+ ..+|++|++++   .+.+..        ...+.++.+....     .+ ++...
T Consensus       224 ~vi~lvGp-tGvGKTTtaaKLA~~~~~~~G~~V~Lit---~Dt~R~--------aA~eQLk~yAe~l-----gv-p~~~~  285 (432)
T PRK12724        224 KVVFFVGP-TGSGKTTSIAKLAAKYFLHMGKSVSLYT---TDNYRI--------AAIEQLKRYADTM-----GM-PFYPV  285 (432)
T ss_pred             eEEEEECC-CCCCHHHHHHHHHHHHHHhcCCeEEEec---ccchhh--------hHHHHHHHHHHhc-----CC-Ceeeh
Confidence            46778876 9999999999999876 57899999987   433321        1222333332210     01 11000


Q ss_pred             CCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHH---HHh----CCCEEEEEcCCCC
Q psy14904         86 YPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLA---EKL----GLPIILVIDLKIG  158 (233)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~---~~~----~~~vllV~~~~~~  158 (233)
                                     .....+.+.++  +++||+|||||+|....   .......+.   ...    ...+++|.++..+
T Consensus       286 ---------------~~~~~l~~~l~--~~~~D~VLIDTaGr~~r---d~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~  345 (432)
T PRK12724        286 ---------------KDIKKFKETLA--RDGSELILIDTAGYSHR---NLEQLERMQSFYSCFGEKDSVENLLVLSSTSS  345 (432)
T ss_pred             ---------------HHHHHHHHHHH--hCCCCEEEEeCCCCCcc---CHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC
Confidence                           00123344443  36899999999765321   111122222   211    2357888888764


Q ss_pred             cHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce--Ee---cCCCCCCChh
Q psy14904        159 CINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL--GR---IPYLYNLNIN  221 (233)
Q Consensus       159 ~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl--g~---IP~~~~l~~~  221 (233)
                      . +++....+..  ..+++-|+|++|.+ . .......+.... .++.|+.  +.   ||+|-....+
T Consensus       346 ~-~~~~~~~~~f--~~~~~~glIlTKLD-E-t~~~G~il~i~~-~~~lPI~ylt~GQ~VPeDi~~A~~  407 (432)
T PRK12724        346 Y-HHTLTVLKAY--ESLNYRRILLTKLD-E-ADFLGSFLELAD-TYSKSFTYLSVGQEVPFDILNATK  407 (432)
T ss_pred             H-HHHHHHHHHh--cCCCCCEEEEEccc-C-CCCccHHHHHHH-HHCCCEEEEecCCCCCCCHHHhhH
Confidence            3 3344444444  45677899999999 3 223344555444 4577775  22   7766554433

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=99.21  E-value=1e-09  Score=97.24  Aligned_cols=162  Identities=10%  Similarity=0.026  Sum_probs=91.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHc--CCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKR--GISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYL   83 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~--G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~   83 (233)
                      .++|+|+|. +|+||||++.+|+..+.++  |++|.+++   .+.+..        ...+.+..+...       +. +.
T Consensus       350 G~vIaLVGP-tGvGKTTtaakLAa~la~~~~gkkVaLId---tDtyRi--------gA~EQLk~ya~i-------Lg-v~  409 (559)
T PRK12727        350 GGVIALVGP-TGAGKTTTIAKLAQRFAAQHAPRDVALVT---TDTQRV--------GGREQLHSYGRQ-------LG-IA  409 (559)
T ss_pred             CCEEEEECC-CCCCHHHHHHHHHHHHHHhcCCCceEEEe---cccccc--------cHHHHHHHhhcc-------cC-ce
Confidence            468999988 8999999999999998876  57999987   333221        112223322211       10 01


Q ss_pred             ecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCC--chHHHHHHhCCCEEEEEcCCCCcHH
Q psy14904         84 FKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNE--NSADLAEKLGLPIILVIDLKIGCIN  161 (233)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~--~~~~l~~~~~~~vllV~~~~~~~~~  161 (233)
                      +...             .....+.+.++++ .+||+||||++|....  ...+  ....+........++|.+... +..
T Consensus       410 v~~a-------------~d~~~L~~aL~~l-~~~DLVLIDTaG~s~~--D~~l~eeL~~L~aa~~~a~lLVLpAts-s~~  472 (559)
T PRK12727        410 VHEA-------------DSAESLLDLLERL-RDYKLVLIDTAGMGQR--DRALAAQLNWLRAARQVTSLLVLPANA-HFS  472 (559)
T ss_pred             eEec-------------CcHHHHHHHHHHh-ccCCEEEecCCCcchh--hHHHHHHHHHHHHhhcCCcEEEEECCC-Chh
Confidence            1100             1223466667666 4799999999976421  0000  001111112335666776654 333


Q ss_pred             HHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904        162 NALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL  209 (233)
Q Consensus       162 ~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl  209 (233)
                      +....++.++.  .++.|+|+||++ .. ......+..+.+ .+.|+.
T Consensus       473 Dl~eii~~f~~--~~~~gvILTKlD-Et-~~lG~aLsv~~~-~~LPI~  515 (559)
T PRK12727        473 DLDEVVRRFAH--AKPQGVVLTKLD-ET-GRFGSALSVVVD-HQMPIT  515 (559)
T ss_pred             HHHHHHHHHHh--hCCeEEEEecCc-Cc-cchhHHHHHHHH-hCCCEE
Confidence            44444554443  467899999998 43 233455555553 467765

>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=99.17  E-value=2.2e-09  Score=90.48  Aligned_cols=68  Identities=15%  Similarity=0.119  Sum_probs=45.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhh----------hhhhHHHHHhhcC-CCceEecCCC
Q psy14904        147 LPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLF----------ANENYIELTKYLN-VTPLGRIPYL  215 (233)
Q Consensus       147 ~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~----------~~~~~~~l~~~~~-~pvlg~IP~~  215 (233)
                      ....+|+.++..++.++....+.+...++++.++++|++- |+...          .+.....+++.+. .++ ..+|.-
T Consensus       208 T~~~lV~~pe~l~l~e~~ra~~~l~~~~i~v~~vi~n~~~-p~~~~~~~~~~~~~~q~~~l~~~~~~f~~~~v-~~vp~~  285 (322)
T COG0003         208 TSFRLVSIPEKLSLYETKRAVERLSLYGIPVDAVIVNKIL-PDEADQPFLEARRKIQQKYLKELEETFSDLAV-VKVPLL  285 (322)
T ss_pred             CeEEEEecccccchHHHHHHHHHHHHcCCchheeeeeccc-ccccccHHHHHHHHHHHHHHHHHHHhhcccce-EEeccc
Confidence            5566777777777777888888888999999999999987 54321          1123444555444 444 477775


Q ss_pred             C
Q psy14904        216 Y  216 (233)
Q Consensus       216 ~  216 (233)
                      .
T Consensus       286 ~  286 (322)
T COG0003         286 A  286 (322)
T ss_pred             c
Confidence            5

>PRK13886 conjugal transfer protein TraL; Provisional

Probab=99.17  E-value=2e-09  Score=86.97  Aligned_cols=38  Identities=11%  Similarity=0.140  Sum_probs=36.4

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      |+++++|.+.||||||||++.+||.+++++|++|+++|
T Consensus         1 m~~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD   38 (241)
T PRK13886          1 MAKIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCID   38 (241)
T ss_pred             CCeEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEE
Confidence            46899999999999999999999999999999999999

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=99.15  E-value=9.5e-10  Score=91.53  Aligned_cols=164  Identities=16%  Similarity=0.225  Sum_probs=96.7

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeec
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFK   85 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~   85 (233)
                      .-+|.+.|. .|+||||+..-||++|.++|++|++.=   ++.        ++....+.+..|.... .. +.+..   .
T Consensus       139 p~Vil~vGV-NG~GKTTTIaKLA~~l~~~g~~VllaA---~DT--------FRAaAiEQL~~w~er~-gv-~vI~~---~  201 (340)
T COG0552         139 PFVILFVGV-NGVGKTTTIAKLAKYLKQQGKSVLLAA---GDT--------FRAAAIEQLEVWGERL-GV-PVISG---K  201 (340)
T ss_pred             cEEEEEEec-CCCchHhHHHHHHHHHHHCCCeEEEEe---cch--------HHHHHHHHHHHHHHHh-CC-eEEcc---C
Confidence            568999999 899999999999999999999999863   222        2223444454443210 00 11111   1


Q ss_pred             CCCChhhhhhhcCCCCCHHHHHHHHHH-hhcCCCeEEEeccCcccCccCCCCchHHHHHH-----hCCC-----EEEEEc
Q psy14904         86 YPISPYTSSNLENRIINTSHIINCYNY-LSNLTDVIILEGIGGFSVPFHDNENSADLAEK-----LGLP-----IILVID  154 (233)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~-----~~~~-----vllV~~  154 (233)
                        .+..++          ....++++. .+++||+|||||+|.+..-   .-+..++-+.     -+.+     +++|.+
T Consensus       202 --~G~DpA----------aVafDAi~~Akar~~DvvliDTAGRLhnk---~nLM~EL~KI~rV~~k~~~~ap~e~llvlD  266 (340)
T COG0552         202 --EGADPA----------AVAFDAIQAAKARGIDVVLIDTAGRLHNK---KNLMDELKKIVRVIKKDDPDAPHEILLVLD  266 (340)
T ss_pred             --CCCCcH----------HHHHHHHHHHHHcCCCEEEEeCcccccCc---hhHHHHHHHHHHHhccccCCCCceEEEEEE
Confidence              111111          134555554 3479999999999987532   1123333221     1234     777777


Q ss_pred             CCCC--cHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904        155 LKIG--CINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL  209 (233)
Q Consensus       155 ~~~~--~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl  209 (233)
                      +..|  ++++    .+.+. .-+++-|+|++|++ ... . ...+-.+...+++|+.
T Consensus       267 AttGqnal~Q----Ak~F~-eav~l~GiIlTKlD-gtA-K-GG~il~I~~~l~~PI~  315 (340)
T COG0552         267 ATTGQNALSQ----AKIFN-EAVGLDGIILTKLD-GTA-K-GGIILSIAYELGIPIK  315 (340)
T ss_pred             cccChhHHHH----HHHHH-HhcCCceEEEEecc-cCC-C-cceeeeHHHHhCCCEE
Confidence            7653  3333    33332 23568899999998 321 1 2334445556788886

>PRK14974 cell division protein FtsY; Provisional

Probab=99.14  E-value=4.3e-09  Score=89.40  Aligned_cols=163  Identities=15%  Similarity=0.139  Sum_probs=90.6

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHH---hCCCcccccceeee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKY---SNSLYEFTKLINPY   82 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~---~~~~~~~~~~~~~~   82 (233)
                      .++|+++|. +|+||||++.+||..|.++|++|+++.   .+...        ......++.+   .|.+         +
T Consensus       140 ~~vi~~~G~-~GvGKTTtiakLA~~l~~~g~~V~li~---~Dt~R--------~~a~eqL~~~a~~lgv~---------v  198 (336)
T PRK14974        140 PVVIVFVGV-NGTGKTTTIAKLAYYLKKNGFSVVIAA---GDTFR--------AGAIEQLEEHAERLGVK---------V  198 (336)
T ss_pred             CeEEEEEcC-CCCCHHHHHHHHHHHHHHcCCeEEEec---CCcCc--------HHHHHHHHHHHHHcCCc---------e
Confidence            468889997 999999999999999999999999986   32221        1122333332   2211         1


Q ss_pred             eecCCCChhhhhhhcCCCCCHHHHHHHHHHh-hcCCCeEEEeccCcccCccCCCCchHHHHHH---h-CCCEEEEEcCCC
Q psy14904         83 LFKYPISPYTSSNLENRIINTSHIINCYNYL-SNLTDVIILEGIGGFSVPFHDNENSADLAEK---L-GLPIILVIDLKI  157 (233)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l-~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~---~-~~~vllV~~~~~  157 (233)
                       +.......+          ...+.+.++.. ..+||+|||||+|....+.   ....++...   . -..+++|.++..
T Consensus       199 -~~~~~g~dp----------~~v~~~ai~~~~~~~~DvVLIDTaGr~~~~~---~lm~eL~~i~~~~~pd~~iLVl~a~~  264 (336)
T PRK14974        199 -IKHKYGADP----------AAVAYDAIEHAKARGIDVVLIDTAGRMHTDA---NLMDELKKIVRVTKPDLVIFVGDALA  264 (336)
T ss_pred             -ecccCCCCH----------HHHHHHHHHHHHhCCCCEEEEECCCccCCcH---HHHHHHHHHHHhhCCceEEEeecccc
Confidence             111001000          11234444432 3579999999997754211   112222111   1 235678887754


Q ss_pred             CcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904        158 GCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL  209 (233)
Q Consensus       158 ~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl  209 (233)
                      +  +++....+.+. ..+++-|+|+||++ .. ......+.... ..+.|+.
T Consensus       265 g--~d~~~~a~~f~-~~~~~~giIlTKlD-~~-~~~G~~ls~~~-~~~~Pi~  310 (336)
T PRK14974        265 G--NDAVEQAREFN-EAVGIDGVILTKVD-AD-AKGGAALSIAY-VIGKPIL  310 (336)
T ss_pred             c--hhHHHHHHHHH-hcCCCCEEEEeeec-CC-CCccHHHHHHH-HHCcCEE
Confidence            2  23333333332 23567899999999 32 22334444444 3578886

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=99.13  E-value=5.7e-09  Score=89.31  Aligned_cols=174  Identities=16%  Similarity=0.182  Sum_probs=105.7

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHH--HcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeee
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFK--KRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPY   82 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~--~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~   82 (233)
                      +.++|++.|+ +||||||+.+-||..+.  ..-++|.++-   .|....        +..+.++.+..+-.      .|+
T Consensus       202 ~~~vi~LVGP-TGVGKTTTlAKLAar~~~~~~~~kVaiIT---tDtYRI--------GA~EQLk~Ya~im~------vp~  263 (407)
T COG1419         202 QKRVIALVGP-TGVGKTTTLAKLAARYVMLKKKKKVAIIT---TDTYRI--------GAVEQLKTYADIMG------VPL  263 (407)
T ss_pred             cCcEEEEECC-CCCcHHHHHHHHHHHHHhhccCcceEEEE---eccchh--------hHHHHHHHHHHHhC------Cce
Confidence            4689999999 99999999999999999  4567999985   333321        23344444432110      011


Q ss_pred             eecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHH----hCCCEEEEEcCCCC
Q psy14904         83 LFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEK----LGLPIILVIDLKIG  158 (233)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~----~~~~vllV~~~~~~  158 (233)
                      ...               .+...+.+.+..++ +||+|||||+|.-.   .+.....++..-    ....+.+|.++.. 
T Consensus       264 ~vv---------------~~~~el~~ai~~l~-~~d~ILVDTaGrs~---~D~~~i~el~~~~~~~~~i~~~Lvlsat~-  323 (407)
T COG1419         264 EVV---------------YSPKELAEAIEALR-DCDVILVDTAGRSQ---YDKEKIEELKELIDVSHSIEVYLVLSATT-  323 (407)
T ss_pred             EEe---------------cCHHHHHHHHHHhh-cCCEEEEeCCCCCc---cCHHHHHHHHHHHhccccceEEEEEecCc-
Confidence            111               13456777887774 78999999987632   122233333322    2456777777764 


Q ss_pred             cHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce----E-ecCCCCCCChh
Q psy14904        159 CINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL----G-RIPYLYNLNIN  221 (233)
Q Consensus       159 ~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl----g-~IP~~~~l~~~  221 (233)
                      ..++....++.+  ..+++-|+|++|.+ . +.........+.+ .+.|+.    | .||+|-....+
T Consensus       324 K~~dlkei~~~f--~~~~i~~~I~TKlD-E-T~s~G~~~s~~~e-~~~PV~YvT~GQ~VPeDI~va~~  386 (407)
T COG1419         324 KYEDLKEIIKQF--SLFPIDGLIFTKLD-E-TTSLGNLFSLMYE-TRLPVSYVTNGQRVPEDIVVANP  386 (407)
T ss_pred             chHHHHHHHHHh--ccCCcceeEEEccc-c-cCchhHHHHHHHH-hCCCeEEEeCCCCCCchhhhcCh
Confidence            223344444444  35678899999999 3 2333455554443 356664    2 27777766655

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=99.11  E-value=9.5e-10  Score=76.15  Aligned_cols=33  Identities=27%  Similarity=0.511  Sum_probs=28.9

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ++++|.+ |+||||++.+|+..|++.|++|+++|
T Consensus         2 ~~~~g~~-G~Gktt~~~~l~~~l~~~g~~v~~~~   34 (99)
T cd01983           2 IVVTGKG-GVGKTTLAANLAAALAKRGKRVLLID   34 (99)
T ss_pred             EEEECCC-CCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence            5677775 99999999999999999999997764

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>cd03114 ArgK-like The function of this protein family is unkown

Probab=99.06  E-value=3e-09  Score=80.26  Aligned_cols=33  Identities=27%  Similarity=0.382  Sum_probs=29.8

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.+.|. +|+||||++.+|+..+.++|.+|++++
T Consensus         2 i~~~G~-~GsGKTt~~~~l~~~~~~~g~~v~ii~   34 (148)
T cd03114           2 IGITGV-PGAGKSTLIDALITALRARGKRVAVLA   34 (148)
T ss_pred             EEEECC-CCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence            556655 999999999999999999999999987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=99.06  E-value=1.8e-08  Score=83.21  Aligned_cols=172  Identities=11%  Similarity=0.116  Sum_probs=100.7

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeec
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFK   85 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~   85 (233)
                      ...+++.|. +|+||||+...|+..+..+|++|++++   .+.+..        .....++.+....     .+ ++...
T Consensus        75 ~~~i~~~G~-~g~GKTtl~~~l~~~l~~~~~~v~~i~---~D~~ri--------~~~~ql~~~~~~~-----~~-~~~~~  136 (270)
T PRK06731         75 VQTIALIGP-TGVGKTTTLAKMAWQFHGKKKTVGFIT---TDHSRI--------GTVQQLQDYVKTI-----GF-EVIAV  136 (270)
T ss_pred             CCEEEEECC-CCCcHHHHHHHHHHHHHHcCCeEEEEe---cCCCCH--------HHHHHHHHHhhhc-----Cc-eEEec
Confidence            357899998 999999999999999998899999987   332211        1222333332210     01 11110


Q ss_pred             CCCChhhhhhhcCCCCCHHHHHHHHHHhh--cCCCeEEEeccCcccCccCCCCchHHHH---HHh-CCCEEEEEcCCCCc
Q psy14904         86 YPISPYTSSNLENRIINTSHIINCYNYLS--NLTDVIILEGIGGFSVPFHDNENSADLA---EKL-GLPIILVIDLKIGC  159 (233)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~--~~~D~vlID~~~g~~~p~~~~~~~~~l~---~~~-~~~vllV~~~~~~~  159 (233)
                                     .+...+.+.+++++  .+||+||||++|....   ......++.   ... -..+++|.++... 
T Consensus       137 ---------------~~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~---~~~~l~el~~~~~~~~~~~~~LVl~a~~~-  197 (270)
T PRK06731        137 ---------------RDEAAMTRALTYFKEEARVDYILIDTAGKNYR---ASETVEEMIETMGQVEPDYICLTLSASMK-  197 (270)
T ss_pred             ---------------CCHHHHHHHHHHHHhcCCCCEEEEECCCCCcC---CHHHHHHHHHHHhhhCCCeEEEEEcCccC-
Confidence                           12345667777665  3799999999987531   111112222   111 1246888877542 


Q ss_pred             HHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce--Ee---cCCCCCCC
Q psy14904        160 INNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL--GR---IPYLYNLN  219 (233)
Q Consensus       160 ~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl--g~---IP~~~~l~  219 (233)
                      -+++...++.++  .+++-|+|++|.+ .. ......+.... .++.|+.  +.   ||+|-...
T Consensus       198 ~~d~~~~~~~f~--~~~~~~~I~TKlD-et-~~~G~~l~~~~-~~~~Pi~~it~Gq~vp~di~~a  257 (270)
T PRK06731        198 SKDMIEIITNFK--DIHIDGIVFTKFD-ET-ASSGELLKIPA-VSSAPIVLMTDGQDVKKNIHIA  257 (270)
T ss_pred             HHHHHHHHHHhC--CCCCCEEEEEeec-CC-CCccHHHHHHH-HHCcCEEEEeCCCCCCcchhhC
Confidence            234444555554  3788899999999 32 23334445444 3577775  22   77665444

>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]

Probab=99.03  E-value=9e-09  Score=87.06  Aligned_cols=197  Identities=14%  Similarity=0.103  Sum_probs=116.4

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHHHc-CCeeeEEeeeecCcccCCCCCCc-cchHHH-HHHHHhCCCccc-----
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFKKR-GISCIGMKPIASGAYLNNKNKIW-FNEDVN-LLNKYSNSLYEF-----   75 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~-G~~Vl~~dp~~~~~~~~~~~~~l-~~~d~~-~~~~~~~~~~~~-----   75 (233)
                      ++.+.+++.+.|||+|-||+|.|+|..++.+ +..|++.|..   .+...  .++ .+.+.. .+.+....++-.     
T Consensus       102 ~~~r~iafl~akgg~g~stlA~n~a~~l~~~~~~~v~L~DL~---~~~G~--~~~~l~~~~a~~i~~~~~~peRLDq~ll  176 (366)
T COG4963         102 QQGRELAFLGAKGGVGTSTLAHNLAKGLAILSGAAVLLVDLD---LQGGT--AALYLDQDPAFGIAEAVKQPERLDQVLL  176 (366)
T ss_pred             hhceEEEEEeecCCcchHHHHHHHHHHHhhhcCCcEEEEEcC---CCCcc--hhhhcCCCchhhHHHHhcCHHHhhHHHH
Confidence            3568999999999999999999999999975 8999999832   22110  000 000000 011110000000     


Q ss_pred             ----ccceee-eeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEE
Q psy14904         76 ----TKLINP-YLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPII  150 (233)
Q Consensus        76 ----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vl  150 (233)
                          .+..+. -.+..|..  +   ....+.....+...++.++..||+||+|-| ....+     -...+.... ..++
T Consensus       177 d~~~~~~~~~l~ll~a~~~--~---~~~~d~~~~~~~~Ll~~~~~~~~~vV~Dlp-~~~~~-----~t~~vL~~S-d~iv  244 (366)
T COG4963         177 DSLLTRLASGLKLLAAPTE--L---AKNYDLKTGAVERLLDLLRGSFDFVVVDLP-NIWTD-----WTRQVLSGS-DEIV  244 (366)
T ss_pred             HHHHhccCCCceeecCCcc--h---hhhcccccchHHHHHHHhhccCCeEEEcCC-Cccch-----HHHHHHhcC-CeEE
Confidence                000000 01111111  1   111233445667777788889999999987 22111     122333332 3789


Q ss_pred             EEEcCCCCcHHHHHHHHHHHHh--CCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCChh
Q psy14904        151 LVIDLKIGCINNALLSLEAINS--RGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNIN  221 (233)
Q Consensus       151 lV~~~~~~~~~~~~~~~~~l~~--~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~~  221 (233)
                      +|++....++..+..-++.+++  .+.+-.-.|+|++. .....  + .+.+.+.+|++-+..+|.++.+.-.
T Consensus       245 iv~e~sl~slR~ak~lld~l~~~r~~~~~p~lv~n~~~-~~~~~--~-~~dl~~~~~i~~~~~~p~d~~~~~~  313 (366)
T COG4963         245 IVAEPSLASLRNAKELLDELKRLRPNDPKPILVLNRVG-VPKRP--E-PSDLEEILGIESLLVLPFDPALFGD  313 (366)
T ss_pred             EEecccHHHHHHHHHHHHHHHHhCCCCCCceEEeeecC-CCCCC--C-HHHHHHHhCCchhccccCCchhhhh
Confidence            9999998888776666666653  33344668999998 43222  2 6677888999999999999876644

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=99.01  E-value=2.7e-08  Score=91.98  Aligned_cols=175  Identities=13%  Similarity=0.111  Sum_probs=99.2

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHH-HcC-CeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFK-KRG-ISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYL   83 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~-~~G-~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~   83 (233)
                      .++|++.|. .|+||||+...||..+. ++| ++|.++.   .+.+..        ...+.++.+....     .+ ++.
T Consensus       185 g~Vi~lVGp-nGvGKTTTiaKLA~~~~~~~G~kkV~lit---~Dt~Ri--------gA~eQL~~~a~~~-----gv-pv~  246 (767)
T PRK14723        185 GGVLALVGP-TGVGKTTTTAKLAARCVAREGADQLALLT---TDSFRI--------GALEQLRIYGRIL-----GV-PVH  246 (767)
T ss_pred             CeEEEEECC-CCCcHHHHHHHHHhhHHHHcCCCeEEEec---Ccccch--------HHHHHHHHHHHhC-----CC-Ccc
Confidence            468999999 99999999999999885 566 5999986   333211        1222233322210     00 111


Q ss_pred             ecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHh----CCCEEEEEcCCCCc
Q psy14904         84 FKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKL----GLPIILVIDLKIGC  159 (233)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~----~~~vllV~~~~~~~  159 (233)
                      ..               .+...+.+.+++++ +||+|||||+|....   .......+....    ...+++|.++... 
T Consensus       247 ~~---------------~~~~~l~~al~~~~-~~D~VLIDTAGRs~~---d~~l~eel~~l~~~~~p~e~~LVLsAt~~-  306 (767)
T PRK14723        247 AV---------------KDAADLRFALAALG-DKHLVLIDTVGMSQR---DRNVSEQIAMLCGVGRPVRRLLLLNAASH-  306 (767)
T ss_pred             cc---------------CCHHHHHHHHHHhc-CCCEEEEeCCCCCcc---CHHHHHHHHHHhccCCCCeEEEEECCCCc-
Confidence            00               12345677777764 789999999975421   111122222211    2458888887642 


Q ss_pred             HHHHHHHHHHHHhC-CCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce--Ee---cCCCCCCChh
Q psy14904        160 INNALLSLEAINSR-GLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL--GR---IPYLYNLNIN  221 (233)
Q Consensus       160 ~~~~~~~~~~l~~~-~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl--g~---IP~~~~l~~~  221 (233)
                      .+.+...++.++.. +.++-|+|++|.+ .. ...-..+..+. .+++|+.  +.   ||+|-....+
T Consensus       307 ~~~l~~i~~~f~~~~~~~i~glIlTKLD-Et-~~~G~iL~i~~-~~~lPI~yit~GQ~VPdDL~~a~~  371 (767)
T PRK14723        307 GDTLNEVVHAYRHGAGEDVDGCIITKLD-EA-THLGPALDTVI-RHRLPVHYVSTGQKVPEHLELAQA  371 (767)
T ss_pred             HHHHHHHHHHHhhcccCCCCEEEEeccC-CC-CCccHHHHHHH-HHCCCeEEEecCCCChhhcccCCH
Confidence            23333444555432 4467899999999 32 23334455444 3477765  32   6665544433

>PRK13768 GTPase; Provisional

Probab=99.00  E-value=9e-09  Score=84.54  Aligned_cols=37  Identities=24%  Similarity=0.310  Sum_probs=33.9

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      |++++.|+|. +|+||||++.+++.+++++|++|+++|
T Consensus         1 ~~~~i~v~G~-~G~GKTt~~~~~~~~l~~~g~~v~~i~   37 (253)
T PRK13768          1 MMYIVFFLGT-AGSGKTTLTKALSDWLEEQGYDVAIVN   37 (253)
T ss_pred             CcEEEEEECC-CCccHHHHHHHHHHHHHhcCCceEEEE
Confidence            4677888887 999999999999999999999999987

>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional

Probab=98.97  E-value=3.5e-09  Score=87.67  Aligned_cols=38  Identities=24%  Similarity=0.279  Sum_probs=34.7

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIA   45 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~   45 (233)
                      |++|.|+|. +|+||||++.+|+..|+++| +|+++|...
T Consensus         1 M~~i~i~G~-~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~   38 (274)
T PRK14493          1 MKVLSIVGY-KATGKTTLVERLVDRLSGRG-RVGTVKHMD   38 (274)
T ss_pred             CcEEEEECC-CCCCHHHHHHHHHHHHHhCC-CEEEEEEcC
Confidence            679999999 59999999999999999999 899999443

>KOG0780|consensus

Probab=98.91  E-value=2e-08  Score=84.84  Aligned_cols=148  Identities=17%  Similarity=0.158  Sum_probs=82.8

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeec
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFK   85 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~   85 (233)
                      ..+|+++|- .|+||||+|..||.++.++|++++++=.   +..        +....+.+.+... ..    . .|+.-.
T Consensus       101 psVimfVGL-qG~GKTTtc~KlA~y~kkkG~K~~Lvca---DTF--------RagAfDQLkqnA~-k~----~-iP~ygs  162 (483)
T KOG0780|consen  101 PSVIMFVGL-QGSGKTTTCTKLAYYYKKKGYKVALVCA---DTF--------RAGAFDQLKQNAT-KA----R-VPFYGS  162 (483)
T ss_pred             CcEEEEEec-cCCCcceeHHHHHHHHHhcCCceeEEee---ccc--------ccchHHHHHHHhH-hh----C-CeeEec
Confidence            458999998 8999999999999999999999999741   111        1112222333221 00    1 122111


Q ss_pred             C-CCChhhhhhhcCCCCCHHHHHHHHHHh-hcCCCeEEEeccCcccCccCCCCchHHHHHHhC-CCEEEEEcCCCCcHHH
Q psy14904         86 Y-PISPYTSSNLENRIINTSHIINCYNYL-SNLTDVIILEGIGGFSVPFHDNENSADLAEKLG-LPIILVIDLKIGCINN  162 (233)
Q Consensus        86 ~-~~~~~~~~~~~~~~~~~~~l~~~~~~l-~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~-~~vllV~~~~~~~~~~  162 (233)
                      . ...|.            ....+..++. .++||+||+||.|.....-.-..-.-++..+.. ..+|+|.++..+.   
T Consensus       163 yte~dpv------------~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQ---  227 (483)
T KOG0780|consen  163 YTEADPV------------KIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQ---  227 (483)
T ss_pred             ccccchH------------HHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccH---
Confidence            0 00110            1123333333 378999999998765321000001122222222 4699999987642   


Q ss_pred             HHHHHHHHHhCCCcEEEEEEcccC
Q psy14904        163 ALLSLEAINSRGLKLIGWVANHTQ  186 (233)
Q Consensus       163 ~~~~~~~l~~~~~~i~GiVlN~~~  186 (233)
                      +.......-+..+.+-++|+++.+
T Consensus       228 aae~Qa~aFk~~vdvg~vIlTKlD  251 (483)
T KOG0780|consen  228 AAEAQARAFKETVDVGAVILTKLD  251 (483)
T ss_pred             hHHHHHHHHHHhhccceEEEEecc
Confidence            212222223456788999999998

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.91  E-value=6.7e-08  Score=83.07  Aligned_cols=172  Identities=12%  Similarity=0.080  Sum_probs=93.2

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHH-cC-CeeeEEeeeecCcccCCCCCCccchHHHHHHHH---hCCCccccccee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKK-RG-ISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKY---SNSLYEFTKLIN   80 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~-~G-~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~---~~~~~~~~~~~~   80 (233)
                      -.++++.|+ +|+||||++..||..+.. +| .+|+++.   .+....        ...+.++.+   .|.+        
T Consensus       137 g~ii~lvGp-tGvGKTTtiakLA~~~~~~~G~~~V~lit---~D~~R~--------ga~EqL~~~a~~~gv~--------  196 (374)
T PRK14722        137 GGVFALMGP-TGVGKTTTTAKLAARCVMRFGASKVALLT---TDSYRI--------GGHEQLRIFGKILGVP--------  196 (374)
T ss_pred             CcEEEEECC-CCCCHHHHHHHHHHHHHHhcCCCeEEEEe---cccccc--------cHHHHHHHHHHHcCCc--------
Confidence            458889998 999999999999998764 47 6899886   322211        123333332   2311        


Q ss_pred             eeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHH--HhC--CCEEEEEcCC
Q psy14904         81 PYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAE--KLG--LPIILVIDLK  156 (233)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~--~~~--~~vllV~~~~  156 (233)
                       +....               ....+...+.++ .++|+||||++|..  |... ...-.+..  ..+  ..+++|.++.
T Consensus       197 -~~~~~---------------~~~~l~~~l~~l-~~~DlVLIDTaG~~--~~d~-~l~e~La~L~~~~~~~~~lLVLsAt  256 (374)
T PRK14722        197 -VHAVK---------------DGGDLQLALAEL-RNKHMVLIDTIGMS--QRDR-TVSDQIAMLHGADTPVQRLLLLNAT  256 (374)
T ss_pred             -eEecC---------------CcccHHHHHHHh-cCCCEEEEcCCCCC--cccH-HHHHHHHHHhccCCCCeEEEEecCc
Confidence             11000               112244555665 46899999998653  2111 11111111  112  2457777776


Q ss_pred             CCcHHHHHHHHHHHHhCC-------CcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce--Ee---cCCCCCCChh
Q psy14904        157 IGCINNALLSLEAINSRG-------LKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL--GR---IPYLYNLNIN  221 (233)
Q Consensus       157 ~~~~~~~~~~~~~l~~~~-------~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl--g~---IP~~~~l~~~  221 (233)
                      .+. +.+...++..+...       .++-|+|++|.+ . .......+..+.+ .+.|+.  +.   ||++-....+
T Consensus       257 s~~-~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlD-E-t~~~G~~l~~~~~-~~lPi~yvt~Gq~VPedl~~a~~  329 (374)
T PRK14722        257 SHG-DTLNEVVQAYRSAAGQPKAALPDLAGCILTKLD-E-ASNLGGVLDTVIR-YKLPVHYVSTGQKVPENLYVATK  329 (374)
T ss_pred             cCh-HHHHHHHHHHHHhhcccccccCCCCEEEEeccc-c-CCCccHHHHHHHH-HCcCeEEEecCCCCCcccccCCH
Confidence            432 22222333332221       247799999999 3 2233455555543 366665  32   7877665544

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=98.85  E-value=2.5e-08  Score=83.20  Aligned_cols=36  Identities=22%  Similarity=0.186  Sum_probs=32.7

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHc-C-CeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKR-G-ISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~-G-~~Vl~~d   42 (233)
                      .++|+++|+ +|+||||++.+||.+++.+ | ++|.+++
T Consensus       194 ~~vi~~vGp-tGvGKTTt~~kLa~~~~~~~g~~~V~li~  231 (282)
T TIGR03499       194 GGVIALVGP-TGVGKTTTLAKLAARFVLEHGNKKVALIT  231 (282)
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            458999988 9999999999999999986 5 9999998

>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional

Probab=98.82  E-value=2.5e-08  Score=80.18  Aligned_cols=43  Identities=21%  Similarity=0.203  Sum_probs=39.2

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcc
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAY   49 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~   49 (233)
                      |++|.|+|. .|+||||++..|+..|.++|++|.++|+..++.+
T Consensus         1 m~vi~ivG~-~gsGKTtl~~~l~~~L~~~G~~V~viK~~~~~~d   43 (229)
T PRK14494          1 MRAIGVIGF-KDSGKTTLIEKILKNLKERGYRVATAKHTHHEFD   43 (229)
T ss_pred             CeEEEEECC-CCChHHHHHHHHHHHHHhCCCeEEEEEecccCCC
Confidence            679999999 6999999999999999999999999998776555

>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH)

Probab=98.82  E-value=1.4e-08  Score=73.40  Aligned_cols=33  Identities=27%  Similarity=0.466  Sum_probs=30.1

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      |.+++ |||+||||++.+|+.+|+++|++|+++|
T Consensus         2 i~~~G-kgG~GKTt~a~~la~~l~~~g~~V~~id   34 (116)
T cd02034           2 IAITG-KGGVGKTTIAALLARYLAEKGKPVLAID   34 (116)
T ss_pred             EEEEC-CCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence            55666 5999999999999999999999999998

CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.

>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]

Probab=98.81  E-value=1.5e-08  Score=76.93  Aligned_cols=42  Identities=26%  Similarity=0.256  Sum_probs=39.2

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecC
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASG   47 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~   47 (233)
                      ||+++.|+|. .++||||+.-.|...|.++|+||.++|...++
T Consensus         1 m~~Il~ivG~-k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh~   42 (161)
T COG1763           1 MMKILGIVGY-KNSGKTTLIEKLVRKLKARGYRVATVKHAHHD   42 (161)
T ss_pred             CCcEEEEEec-CCCChhhHHHHHHHHHHhCCcEEEEEEecCCC
Confidence            6899999999 89999999999999999999999999977666

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=98.79  E-value=6.7e-07  Score=73.59  Aligned_cols=147  Identities=18%  Similarity=0.171  Sum_probs=81.2

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE--EeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeee
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG--MKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPY   82 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~--~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~   82 (233)
                      +..+|.|||. ||+||||+.-.|...|.++|+||.+  +||-.  +...   ..+. .|-..++.....     .+.   
T Consensus        50 ~a~viGITG~-PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSS--p~TG---GsiL-GDRiRM~~~~~~-----~~v---  114 (323)
T COG1703          50 NAHVIGITGV-PGAGKSTLIEALGRELRERGHRVAVLAVDPSS--PFTG---GSIL-GDRIRMQRLAVD-----PGV---  114 (323)
T ss_pred             CCcEEEecCC-CCCchHHHHHHHHHHHHHCCcEEEEEEECCCC--CCCC---cccc-ccHhhHHhhccC-----CCe---
Confidence            4568999999 9999999999999999999999987  46532  1110   0011 132223332210     111   


Q ss_pred             eec-CCCChhhhhhhcCCCCCHHHHHHHHHHhh-cCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcH
Q psy14904         83 LFK-YPISPYTSSNLENRIINTSHIINCYNYLS-NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCI  160 (233)
Q Consensus        83 ~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~  160 (233)
                      +++ .|....+       .-.....++.+.-+. .+||+|||||.|-       +.+..+++...| .+++|+.++.+.-
T Consensus       115 FiRs~~srG~l-------GGlS~at~~~i~~ldAaG~DvIIVETVGv-------GQsev~I~~~aD-t~~~v~~pg~GD~  179 (323)
T COG1703         115 FIRSSPSRGTL-------GGLSRATREAIKLLDAAGYDVIIVETVGV-------GQSEVDIANMAD-TFLVVMIPGAGDD  179 (323)
T ss_pred             EEeecCCCccc-------hhhhHHHHHHHHHHHhcCCCEEEEEecCC-------CcchhHHhhhcc-eEEEEecCCCCcH
Confidence            111 1111000       011233444444443 5899999999632       345677777766 5677777776542


Q ss_pred             HHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904        161 NNALLSLEAINSRGLKLIGWVANHTQ  186 (233)
Q Consensus       161 ~~~~~~~~~l~~~~~~i~GiVlN~~~  186 (233)
                      -+.... ..++ .+ .  -+|+||.+
T Consensus       180 ~Q~iK~-GimE-ia-D--i~vINKaD  200 (323)
T COG1703         180 LQGIKA-GIME-IA-D--IIVINKAD  200 (323)
T ss_pred             HHHHHh-hhhh-hh-h--eeeEeccC
Confidence            222111 1111 11 2  15899998

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.79  E-value=2.7e-07  Score=81.83  Aligned_cols=170  Identities=12%  Similarity=0.111  Sum_probs=90.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHH-HcC-CeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFK-KRG-ISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYL   83 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~-~~G-~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~   83 (233)
                      .++|++.|. .|+||||++..||..+. ++| ++|+++.   ++.+..    +- .+...++....|++         ..
T Consensus       256 g~Vi~LvGp-nGvGKTTTiaKLA~~~~~~~G~~kV~LI~---~Dt~Ri----gA-~EQLr~~AeilGVp---------v~  317 (484)
T PRK06995        256 GGVFALMGP-TGVGKTTTTAKLAARCVMRHGASKVALLT---TDSYRI----GG-HEQLRIYGKILGVP---------VH  317 (484)
T ss_pred             CcEEEEECC-CCccHHHHHHHHHHHHHHhcCCCeEEEEe---CCccch----hH-HHHHHHHHHHhCCC---------ee
Confidence            468999999 99999999999999985 456 5899887   333221    10 01222222222211         10


Q ss_pred             ecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhC-----CCEEEEEcCCCC
Q psy14904         84 FKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLG-----LPIILVIDLKIG  158 (233)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~-----~~vllV~~~~~~  158 (233)
                      ...               ....+...+.++ +++|+++||++|....   .. ...+.+..+.     ...++|.+...+
T Consensus       318 ~~~---------------~~~Dl~~aL~~L-~d~d~VLIDTaGr~~~---d~-~~~e~~~~l~~~~~p~e~~LVLdAt~~  377 (484)
T PRK06995        318 AVK---------------DAADLRLALSEL-RNKHIVLIDTIGMSQR---DR-MVSEQIAMLHGAGAPVKRLLLLNATSH  377 (484)
T ss_pred             ccC---------------CchhHHHHHHhc-cCCCeEEeCCCCcChh---hH-HHHHHHHHHhccCCCCeeEEEEeCCCc
Confidence            000               011223334444 4689999999754311   10 1122222221     226777777543


Q ss_pred             cHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce--Ee---cCCCCCCC
Q psy14904        159 CINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL--GR---IPYLYNLN  219 (233)
Q Consensus       159 ~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl--g~---IP~~~~l~  219 (233)
                      . +.+....+..+.  ..+-|+|+||++ ... .....+..+. .+++|+.  +.   ||+|-...
T Consensus       378 ~-~~l~~i~~~f~~--~~~~g~IlTKlD-et~-~~G~~l~i~~-~~~lPI~yvt~GQ~VPeDL~~a  437 (484)
T PRK06995        378 G-DTLNEVVQAYRG--PGLAGCILTKLD-EAA-SLGGALDVVI-RYKLPLHYVSNGQRVPEDLHLA  437 (484)
T ss_pred             H-HHHHHHHHHhcc--CCCCEEEEeCCC-Ccc-cchHHHHHHH-HHCCCeEEEecCCCChhhhccC
Confidence            3 334444444433  556799999998 432 2334455444 3477765  22   66655444

>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional

Probab=98.72  E-value=5.1e-08  Score=84.60  Aligned_cols=43  Identities=26%  Similarity=0.242  Sum_probs=38.8

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcc
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAY   49 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~   49 (233)
                      |++|.|+|. .|+||||++..|...|.++|+||.++|...++.+
T Consensus         1 MkVi~IvG~-sgSGKTTLiekLI~~L~~rG~rVavIKH~hH~fd   43 (452)
T PRK14495          1 MRVYGIIGW-KDAGKTGLVERLVAAIAARGFSVSTVKHSHHDVD   43 (452)
T ss_pred             CcEEEEEec-CCCCHHHHHHHHHHHHHhCCCeEEEEeccCcccC
Confidence            689999999 4999999999999999999999999997666554

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.70  E-value=5.8e-07  Score=75.69  Aligned_cols=37  Identities=32%  Similarity=0.374  Sum_probs=34.2

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+++|.|+|. +|+||||++..|+..+.++|++|.+++
T Consensus        33 ~~~~i~i~G~-~G~GKttl~~~l~~~~~~~~~~v~~i~   69 (300)
T TIGR00750        33 NAHRVGITGT-PGAGKSTLLEALGMELRRRGLKVAVIA   69 (300)
T ss_pred             CceEEEEECC-CCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence            5678999977 999999999999999999999999987

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=98.69  E-value=2.7e-06  Score=72.25  Aligned_cols=37  Identities=27%  Similarity=0.274  Sum_probs=33.8

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ...+|.|+|. +|+||||++..|+..|..+|++|.++.
T Consensus        55 ~~~~igi~G~-~GaGKSTl~~~l~~~l~~~g~~v~vi~   91 (332)
T PRK09435         55 NALRIGITGV-PGVGKSTFIEALGMHLIEQGHKVAVLA   91 (332)
T ss_pred             CcEEEEEECC-CCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence            3458999999 999999999999999999999999975

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=98.60  E-value=3.5e-07  Score=69.57  Aligned_cols=40  Identities=28%  Similarity=0.286  Sum_probs=35.0

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCc
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGA   48 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~   48 (233)
                      +|.|+|. .|+||||++..|+..|.++|++|.++|+..++.
T Consensus         1 vi~i~G~-~gsGKTtl~~~l~~~l~~~G~~V~viK~~~~~~   40 (155)
T TIGR00176         1 VLQIVGP-KNSGKTTLIERLVKALKARGYRVATIKHDHHDF   40 (155)
T ss_pred             CEEEECC-CCCCHHHHHHHHHHHHHhcCCeEEEEecccccc
Confidence            4778888 699999999999999999999999999765544

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=98.60  E-value=6.5e-07  Score=69.01  Aligned_cols=45  Identities=22%  Similarity=0.142  Sum_probs=38.1

Q ss_pred             CCCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeec
Q psy14904          1 MINKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIAS   46 (233)
Q Consensus         1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~   46 (233)
                      |=.++++++.|+|. .|+||||+...|...|..+|++|..+|...+
T Consensus         1 ~~~~~~~ii~ivG~-sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~~   45 (173)
T PRK10751          1 MNKTMIPLLAIAAW-SGTGKTTLLKKLIPALCARGIRPGLIKHTHH   45 (173)
T ss_pred             CCCCCceEEEEECC-CCChHHHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence            33456778888887 9999999999999999999999999994433

>TIGR00345 arsA arsenite-activated ATPase (arsA)

Probab=98.55  E-value=4.3e-06  Score=69.91  Aligned_cols=68  Identities=10%  Similarity=0.174  Sum_probs=52.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCch----------hhhhhhHHHHHhhc-CCCceEecCCCC
Q psy14904        148 PIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDT----------LFANENYIELTKYL-NVTPLGRIPYLY  216 (233)
Q Consensus       148 ~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~----------~~~~~~~~~l~~~~-~~pvlg~IP~~~  216 (233)
                      .+++|+.++..++.++...++.++..+.++.|+|+|++. +..          ..++..++.+++.+ +.|++ .+|+.+
T Consensus       191 ~~vlV~~pe~~si~e~~rl~~~L~~~g~~~~~lvvN~v~-~~~~~~~~~~~r~~~q~~~L~~i~~~~~~~~~~-~vp~~~  268 (284)
T TIGR00345       191 SFVLVVIPEKMSLYESERAHKELAKYGIKVDAVIVNQVL-PENAQDEFCQARWELQQKYLKEIPEKFADLPVA-EVPLQK  268 (284)
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHhCCCCCCEEEEeCCc-CCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCeE-EecCCC
Confidence            389999999999999999999999899999999999987 431          12345566677665 46776 778755


Q ss_pred             C
Q psy14904        217 N  217 (233)
Q Consensus       217 ~  217 (233)
                      .
T Consensus       269 ~  269 (284)
T TIGR00345       269 E  269 (284)
T ss_pred             C
Confidence            3

The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.

>KOG0781|consensus

Probab=98.54  E-value=1.6e-06  Score=75.36  Aligned_cols=149  Identities=11%  Similarity=0.092  Sum_probs=87.5

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHh----CCCcccccceeeee
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYS----NSLYEFTKLINPYL   83 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~----~~~~~~~~~~~~~~   83 (233)
                      +|.++|- .||||||--+.+|.+|.+.+.||++.-   |++..        .+.++.++.+.    .+..   ..+..  
T Consensus       380 Vi~fvGV-NGVGKSTNLAKIayWLlqNkfrVLIAA---CDTFR--------sGAvEQLrtHv~rl~~l~~---~~v~l--  442 (587)
T KOG0781|consen  380 VISFVGV-NGVGKSTNLAKIAYWLLQNKFRVLIAA---CDTFR--------SGAVEQLRTHVERLSALHG---TMVEL--  442 (587)
T ss_pred             EEEEEee-cCccccchHHHHHHHHHhCCceEEEEe---ccchh--------hhHHHHHHHHHHHHHHhcc---chhHH--
Confidence            7888888 899999999999999999999999853   32321        12333333322    1110   01111  


Q ss_pred             ecCCCChhhhhhhcCCCCCHHHHHHHHHHhh-cCCCeEEEeccCcccCccCCCCchHHHHHHh----CCCEEEEEcCCCC
Q psy14904         84 FKYPISPYTSSNLENRIINTSHIINCYNYLS-NLTDVIILEGIGGFSVPFHDNENSADLAEKL----GLPIILVIDLKIG  158 (233)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~----~~~vllV~~~~~~  158 (233)
                      |..        .. +.+ .....++++++.+ .+||+|||||+|....   ..-+...+++-.    -+.+++|..+-.+
T Consensus       443 fek--------GY-gkd-~a~vak~AI~~a~~~gfDVvLiDTAGR~~~---~~~lm~~l~k~~~~~~pd~i~~vgealvg  509 (587)
T KOG0781|consen  443 FEK--------GY-GKD-AAGVAKEAIQEARNQGFDVVLIDTAGRMHN---NAPLMTSLAKLIKVNKPDLILFVGEALVG  509 (587)
T ss_pred             Hhh--------hc-CCC-hHHHHHHHHHHHHhcCCCEEEEeccccccC---ChhHHHHHHHHHhcCCCceEEEehhhhhC
Confidence            110        00 111 1223466666544 6899999999988753   111233333321    1357777766443


Q ss_pred             --cHHHHHHHHHHHHhC--CCcEEEEEEcccC
Q psy14904        159 --CINNALLSLEAINSR--GLKLIGWVANHTQ  186 (233)
Q Consensus       159 --~~~~~~~~~~~l~~~--~~~i~GiVlN~~~  186 (233)
                        ++.++..--+.+.+.  .-.|=|+|+++++
T Consensus       510 ~dsv~q~~~fn~al~~~~~~r~id~~~ltk~d  541 (587)
T KOG0781|consen  510 NDSVDQLKKFNRALADHSTPRLIDGILLTKFD  541 (587)
T ss_pred             cHHHHHHHHHHHHHhcCCCccccceEEEEecc
Confidence              566665555555433  2357899999998

>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins

Probab=98.51  E-value=3.5e-06  Score=70.15  Aligned_cols=171  Identities=15%  Similarity=0.137  Sum_probs=93.1

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeee
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLF   84 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~   84 (233)
                      ..++|++.|+.--+||-|++..|..++.++|+++.++=   +|             .+.++..-.|...   +.+.    
T Consensus       111 ~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~fva---TG-------------QTGimia~~Gv~i---Dav~----  167 (301)
T PF07755_consen  111 KAKRVLTVGTDCAVGKMTTALELRRALRERGINAGFVA---TG-------------QTGIMIAGYGVPI---DAVP----  167 (301)
T ss_dssp             SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEEEE----S-------------HHHHHCHSEC--G---GGSB----
T ss_pred             CCCEEEEEccCccccHHHHHHHHHHHHHHcCCCceEEe---cC-------------CceEEEecCCeec---cchh----
Confidence            57899999999999999999999999999999998864   21             2222332223211   1110    


Q ss_pred             cCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCC------
Q psy14904         85 KYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIG------  158 (233)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~------  158 (233)
                           ..+.+         ..+....-+..+++|+++|||-+++..|.-...+..=+....-..++++..++..      
T Consensus       168 -----~DFva---------GavE~~v~~~~~~~d~ivVEGQgsL~hPay~gvsl~lL~Gs~Pd~lVL~H~p~r~~~~~~p  233 (301)
T PF07755_consen  168 -----SDFVA---------GAVEALVPEAAEEHDWIVVEGQGSLSHPAYSGVSLGLLHGSQPDALVLCHAPGRKHRDGFP  233 (301)
T ss_dssp             -----GGGHH---------HHHHHHHHHHCCC-SEEEEE--S-TTSTTTHHCHHHHHHHH--SEEEEEEETT-SC-TTST
T ss_pred             -----hhhHH---------HHHHHHHHhhCcCCCEEEEeccccccCccccccchhhhccCCCCeEEEEecCCcccccCCC
Confidence                 11111         1233344444435599999999999877532323333333333457777777422      


Q ss_pred             -----cHHHHHHHHHHHH--hCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecC
Q psy14904        159 -----CINNALLSLEAIN--SRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIP  213 (233)
Q Consensus       159 -----~~~~~~~~~~~l~--~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP  213 (233)
                           ++.+....++.+.  ..+.+++|+-+|-.+ -.....+...+.+++.+|+|+...+.
T Consensus       234 ~~~ip~l~~~I~l~e~la~~~~~~~VvgIslNt~~-l~~~e~~~~~~~~~~e~glPv~Dp~r  294 (301)
T PF07755_consen  234 HYPIPPLEEEIELIEALAGTKPPAKVVGISLNTSG-LSEEEAKAAIERIEEELGLPVTDPLR  294 (301)
T ss_dssp             TSC---HHHHHHHHHHCCCGC---EEEEEECC-TT-S-HHHHHHHHHHHHHHH-S-EE-HHH
T ss_pred             cCCCCCHHHHHHHHHHhhccCCCccEEEEEEECCC-CCHHHHHHHHHHHHHHHCCCeeeccc
Confidence                 3444444444442  245669999999876 32333456677888889999975543

The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=98.48  E-value=1.2e-06  Score=66.83  Aligned_cols=43  Identities=19%  Similarity=0.156  Sum_probs=37.7

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcc
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAY   49 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~   49 (233)
                      |++|.|+|. .|+||||++..|...|..+|++|.++|...++.+
T Consensus         1 m~vi~i~G~-~gsGKTTli~~L~~~l~~~g~~V~~iK~~~~~~~   43 (159)
T cd03116           1 MKVIGFVGY-SGSGKTTLLEKLIPALSARGLRVAVIKHDHHDFD   43 (159)
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHHHHHHcCCcEEEEEecCCccc
Confidence            578999999 6999999999999999999999999996555443

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []

Probab=98.47  E-value=4.8e-07  Score=60.32  Aligned_cols=64  Identities=13%  Similarity=0.089  Sum_probs=44.2

Q ss_pred             CeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904        118 DVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ  186 (233)
Q Consensus       118 D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~  186 (233)
                      ||+|||.|||.++-   .++..+...  ....++|+.+..-+...+.+.++.+++.+++++|+|-|+..
T Consensus         2 D~LiiD~PPGTgD~---~l~~~~~~~--~~g~ivVTTPq~la~~dv~r~~~~~~~~~vpilGvVENMs~   65 (81)
T PF10609_consen    2 DYLIIDLPPGTGDE---HLTLMQYLP--IDGAIVVTTPQELALADVRRAIDMFRKLNVPILGVVENMSY   65 (81)
T ss_dssp             CEEEEE--SCSSSH---HHHHHHHH----SEEEEEE-CCC--HHHHHHHHHHHHCTT-EEEEEEECT-E
T ss_pred             CEEEEeCCCCCCcH---HHHHHHhCC--CCeEEEEeCCHHHHHHHHHHHHHHHHhcCCCcEEEEECCCc
Confidence            89999999997641   123333333  24689999999889999999999999999999999999964

It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.41  E-value=2.1e-06  Score=69.67  Aligned_cols=125  Identities=21%  Similarity=0.255  Sum_probs=64.9

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE--EeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeee
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG--MKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPY   82 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~--~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~   82 (233)
                      +..+|.|||+ +|+||||+.-.|...|.++|++|.+  +||-.  +...   ..+- .|-..+.....-+ .  -.+.+.
T Consensus        28 ~a~~iGiTG~-PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSS--p~tG---GAlL-GDRiRM~~~~~d~-~--vfIRS~   97 (266)
T PF03308_consen   28 RAHVIGITGP-PGAGKSTLIDALIRELRERGKRVAVLAVDPSS--PFTG---GALL-GDRIRMQELSRDP-G--VFIRSM   97 (266)
T ss_dssp             -SEEEEEEE--TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGG--GCC------SS---GGGCHHHHTST-T--EEEEEE
T ss_pred             CceEEEeeCC-CCCcHHHHHHHHHHHHhhcCCceEEEEECCCC--CCCC---Cccc-ccHHHhcCcCCCC-C--EEEeec
Confidence            4578999999 9999999999999999999999987  56532  1110   0010 1211123332211 0  011221


Q ss_pred             eecCCCChhhhhhhcCCCCCHHHHHHHHHHhh-cCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCC
Q psy14904         83 LFKYPISPYTSSNLENRIINTSHIINCYNYLS-NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIG  158 (233)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~  158 (233)
                      ..+.    ++.       -......+.+.-+. .+||+|||||.|-       +.+..+++...| .+++|..++.+
T Consensus        98 atRG----~lG-------Gls~~t~~~v~ll~aaG~D~IiiETVGv-------GQsE~~I~~~aD-~~v~v~~Pg~G  155 (266)
T PF03308_consen   98 ATRG----SLG-------GLSRATRDAVRLLDAAGFDVIIIETVGV-------GQSEVDIADMAD-TVVLVLVPGLG  155 (266)
T ss_dssp             ---S----SHH-------HHHHHHHHHHHHHHHTT-SEEEEEEESS-------STHHHHHHTTSS-EEEEEEESSTC
T ss_pred             CcCC----CCC-------CccHhHHHHHHHHHHcCCCEEEEeCCCC-------CccHHHHHHhcC-eEEEEecCCCc
Confidence            1110    110       01223444444444 5899999999641       235667766655 56777777654

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional

Probab=98.39  E-value=2.5e-06  Score=78.07  Aligned_cols=110  Identities=15%  Similarity=0.204  Sum_probs=66.3

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeee
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLF   84 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~   84 (233)
                      +|++|.|+|. .|+||||+...|...|.++|+||.++|...++.+...  +   ..|...++++ |-....  -.++..+
T Consensus         9 ~~~vi~ivG~-s~sGKTTlie~li~~L~~~G~rVavIKh~~h~~d~d~--~---gkDs~r~~~a-GA~~v~--i~s~~~~   79 (597)
T PRK14491          9 SIPLLGFCAY-SGTGKTTLLEQLIPELNQRGLRLAVIKHAHHNFDVDQ--P---GKDSYRLRKA-GASQML--VASRVRW   79 (597)
T ss_pred             CccEEEEEcC-CCCCHHHHHHHHHHHHHhCCceEEEEEcCCcCCCCCC--C---CchHHHHHHc-CCcEEE--EEcCCeE
Confidence            4789999998 9999999999999999999999999996655554211  1   1466555543 311100  0000000


Q ss_pred             cCCCChhhhhhhcCCCCCHHHHHHHHHHhh-cCCCeEEEeccCcccCc
Q psy14904         85 KYPISPYTSSNLENRIINTSHIINCYNYLS-NLTDVIILEGIGGFSVP  131 (233)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~D~vlID~~~g~~~p  131 (233)
                      .      +.  .+........+.+.+.++. .++|+|||||-.....|
T Consensus        80 a------~~--~~~~~~~~~~l~~~l~~l~~~~~D~vlvEG~k~~~~P  119 (597)
T PRK14491         80 A------LM--TETPRDGEPELPHLLKQIDADKVDIVLVEGFKKLALP  119 (597)
T ss_pred             E------EE--EEcCcCCCcCHHHHHHhcCcCCCCEEEEcCCCCCCCC
Confidence            0      00  0000001124566666664 47999999997654333

>COG3367 Uncharacterized conserved protein [Function unknown]

Probab=98.38  E-value=1.8e-05  Score=65.78  Aligned_cols=175  Identities=15%  Similarity=0.156  Sum_probs=105.1

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeee
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLF   84 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~   84 (233)
                      +.+++++.||.--+||-|++.-|..++..+|+++.++-   +|.-      ++       +.  .+      +.+   ..
T Consensus       147 ~a~~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a~fva---Tgqt------gi-------l~--~~------~gv---vv  199 (339)
T COG3367         147 DAKVVLVVGTDCAVGKRTTALELREAAREEGIKAGFVA---TGQT------GI-------LI--AD------DGV---VV  199 (339)
T ss_pred             CCcEEEEeccccccchhHHHHHHHHHHHHhCCccceEe---cCce------ee-------EE--ec------Cce---Ee
Confidence            46799999999999999999999999999999998874   2221      11       00  00      001   00


Q ss_pred             cCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCC------
Q psy14904         85 KYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIG------  158 (233)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~------  158 (233)
                      . .....+++.      ..+.+.-.+++  +++|+|+|||-+++..|.- ..+..-+-...-+.++++.++...      
T Consensus       200 d-av~~DfaAG------ave~~v~~~~e--~~~Dii~VEGQgsl~HP~y-~vtl~il~gs~PDavvL~H~P~r~~~~g~P  269 (339)
T COG3367         200 D-AVVMDFAAG------AVESAVYEAEE--KNPDIIFVEGQGSLTHPAY-GVTLGILHGSAPDAVVLCHDPNRKYRDGFP  269 (339)
T ss_pred             c-chhHHHHHH------HHHHHHHHhhh--cCCCEEEEeccccccCCCc-ccchhhhcCCCCCeEEEEecCCCccccCCC
Confidence            0 000111111      12233333333  5999999999999987753 223332322222457777777632      


Q ss_pred             ----cHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCC
Q psy14904        159 ----CINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLN  219 (233)
Q Consensus       159 ----~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~  219 (233)
                          .+.+.....+.+  .+.+++|+.+|--+ =+....++..+.++..+|+|+...+.+..++.
T Consensus       270 ~~ip~leevi~l~e~l--~~a~Vvgi~lNtr~-~dE~~are~~a~l~~efglP~~Dp~~~~~d~~  331 (339)
T COG3367         270 EPIPPLEEVIALYELL--SNAKVVGIALNTRN-LDEEEARELCAKLEAEFGLPVTDPLRFGEDVL  331 (339)
T ss_pred             CcCCCHHHHHHHHHHc--cCCcEEEEEecccc-cChHHHHHHHHHHhhccCCccccccccchHHH
Confidence                233333333333  45899999998654 22223356667777788999987777665543

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=98.38  E-value=3.8e-06  Score=62.76  Aligned_cols=39  Identities=28%  Similarity=0.369  Sum_probs=31.8

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeec
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIAS   46 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~   46 (233)
                      ++|.|+|. .|+||||++..|...|.++|++|++++...+
T Consensus         1 pvv~VvG~-~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~   39 (140)
T PF03205_consen    1 PVVQVVGP-KNSGKTTLIRKLINELKRRGYRVAVIKHTDH   39 (140)
T ss_dssp             -EEEEEES-TTSSHHHHHHHHHHHHHHTT--EEEEEE-ST
T ss_pred             CEEEEECC-CCCCHHHHHHHHHHHHhHcCCceEEEEEccC
Confidence            57999999 6999999999999999999999998874444

>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional

Probab=98.37  E-value=2.1e-06  Score=74.27  Aligned_cols=43  Identities=21%  Similarity=0.128  Sum_probs=38.4

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCc
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGA   48 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~   48 (233)
                      ++++|.|+|. +|+||||+...|...|.++|++|.++|...++.
T Consensus       204 ~~~~~~~~g~-~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~h~~  246 (366)
T PRK14489        204 APPLLGVVGY-SGTGKTTLLEKLIPELIARGYRIGLIKHSHHRV  246 (366)
T ss_pred             CccEEEEecC-CCCCHHHHHHHHHHHHHHcCCEEEEEEECCccc
Confidence            4789999998 999999999999999999999999999655543

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=98.28  E-value=1.5e-06  Score=70.67  Aligned_cols=154  Identities=16%  Similarity=0.223  Sum_probs=69.1

Q ss_pred             EEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe--eeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeecCCC
Q psy14904         11 ITGTNTNIGKTIISCALLSEFKKRGISCIGMK--PIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKYPI   88 (233)
Q Consensus        11 i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d--p~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (233)
                      |+|+ .|+||||.+.++...+...|++|.++.  |-.....+.   +..--.|.-...+.          +.    ....
T Consensus         1 ViGp-aGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~---~~iDird~i~~~ev----------m~----~~~L   62 (238)
T PF03029_consen    1 VIGP-AGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYP---PDIDIRDLISVEEV----------ME----EYGL   62 (238)
T ss_dssp             -EES-TTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS-----SEEGGGT--HHHH----------HT----T-T-
T ss_pred             CCCC-CCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccC---chHHHHhhhhhhhh----------hh----hcCc
Confidence            5677 899999999999999999999999985  322111110   00000011001111          10    1112


Q ss_pred             Chhhh--hhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHh----CCCEEEEEcCCC-Cc--
Q psy14904         89 SPYTS--SNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKL----GLPIILVIDLKI-GC--  159 (233)
Q Consensus        89 ~~~~~--~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~----~~~vllV~~~~~-~~--  159 (233)
                      +|+-+  ...+--....+++.+.+++. ++ +|+|+||||-+-- ....-....++..+    ..-++.++++.. ..  
T Consensus        63 GPNGal~~~me~l~~~~d~l~~~i~~~-~~-~y~l~DtPGQiEl-f~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~  139 (238)
T PF03029_consen   63 GPNGALIYCMEYLEENIDWLDEEIEKY-ED-DYLLFDTPGQIEL-FTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPS  139 (238)
T ss_dssp             -HHHHHHHHHHHHGGGHHHHHHHHHHH-H--SEEEEE--SSHHH-HHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHhhc-CC-cEEEEeCCCCEEE-EEechhHHHHHHHHhhhcceEEEEEEecccccChh
Confidence            23211  11111112346777777776 33 9999999986510 00011122222222    123455555442 22  


Q ss_pred             --HHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904        160 --INNALLSLEAINSRGLKLIGWVANHTQ  186 (233)
Q Consensus       160 --~~~~~~~~~~l~~~~~~i~GiVlN~~~  186 (233)
                        +...+.+...+-+.+++.+ .|+||++
T Consensus       140 ~f~s~~L~s~s~~~~~~lP~v-nvlsK~D  167 (238)
T PF03029_consen  140 KFVSSLLLSLSIMLRLELPHV-NVLSKID  167 (238)
T ss_dssp             HHHHHHHHHHHHHHHHTSEEE-EEE--GG
T ss_pred             hHHHHHHHHHHHHhhCCCCEE-EeeeccC
Confidence              2333444444456788855 6799998

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.23  E-value=8.4e-05  Score=65.13  Aligned_cols=161  Identities=12%  Similarity=0.095  Sum_probs=85.1

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHH-cC-CeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKK-RG-ISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYL   83 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~-~G-~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~   83 (233)
                      ..++++.|. .|+||||+...||..+.. .| .++.++-   .+....    +.. +....+....|++         ..
T Consensus       191 g~vi~lvGp-nG~GKTTtlakLA~~~~~~~~~~~v~~i~---~d~~ri----gal-EQL~~~a~ilGvp---------~~  252 (420)
T PRK14721        191 GGVYALIGP-TGVGKTTTTAKLAARAVIRHGADKVALLT---TDSYRI----GGH-EQLRIYGKLLGVS---------VR  252 (420)
T ss_pred             CcEEEEECC-CCCCHHHHHHHHHHHHHHhcCCCeEEEEe---cCCcch----hHH-HHHHHHHHHcCCc---------ee
Confidence            468999999 999999999999986543 33 6777764   212111    100 0111122222221         10


Q ss_pred             ecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHh----CCCEEEEEcCCCCc
Q psy14904         84 FKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKL----GLPIILVIDLKIGC  159 (233)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~----~~~vllV~~~~~~~  159 (233)
                      ..               .....+...+..+ .++|+|+||++ |...-  .......+....    ...+++|.++... 
T Consensus       253 ~v---------------~~~~dl~~al~~l-~~~d~VLIDTa-Grsqr--d~~~~~~l~~l~~~~~~~~~~LVl~at~~-  312 (420)
T PRK14721        253 SI---------------KDIADLQLMLHEL-RGKHMVLIDTV-GMSQR--DQMLAEQIAMLSQCGTQVKHLLLLNATSS-  312 (420)
T ss_pred             cC---------------CCHHHHHHHHHHh-cCCCEEEecCC-CCCcc--hHHHHHHHHHHhccCCCceEEEEEcCCCC-
Confidence            00               0122344555554 57899999996 43321  111111221111    2357788887642 


Q ss_pred             HHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904        160 INNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL  209 (233)
Q Consensus       160 ~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl  209 (233)
                      -+.+...++..  ..+++-|+|++|.+ . .......+..+.+ .+.|+.
T Consensus       313 ~~~~~~~~~~f--~~~~~~~~I~TKlD-E-t~~~G~~l~~~~~-~~lPi~  357 (420)
T PRK14721        313 GDTLDEVISAY--QGHGIHGCIITKVD-E-AASLGIALDAVIR-RKLVLH  357 (420)
T ss_pred             HHHHHHHHHHh--cCCCCCEEEEEeee-C-CCCccHHHHHHHH-hCCCEE
Confidence            23333444444  35778899999999 3 2233445555553 477765

>KOG1532|consensus

Probab=98.20  E-value=6.8e-05  Score=61.23  Aligned_cols=164  Identities=16%  Similarity=0.159  Sum_probs=86.2

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe--eeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK--PIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYL   83 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d--p~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~   83 (233)
                      ..+|.|.|- .|+||||.+..|-..+.+++.+.-++.  |.........   .+--.|+.-.+..          +..|.
T Consensus        19 p~~ilVvGM-AGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~a---niDIRDtVkYkEv----------MkqY~   84 (366)
T KOG1532|consen   19 PVIILVVGM-AGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPA---NIDIRDTVKYKEV----------MKQYQ   84 (366)
T ss_pred             CcEEEEEec-CCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCcc---CCchhhhhhHHHH----------HHHhC
Confidence            456777777 899999999999999998887766654  3221111100   0000122112111          11111


Q ss_pred             ecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccC---ccCCCCchHHHHHHhCCCEEEEEcCCC-C-
Q psy14904         84 FKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSV---PFHDNENSADLAEKLGLPIILVIDLKI-G-  158 (233)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~---p~~~~~~~~~l~~~~~~~vllV~~~~~-~-  158 (233)
                      +. |-+.-..+ +.......+.+.+.+++..+.+|++|||+||-+-.   ........-.++.....-++.|++... . 
T Consensus        85 LG-PNGgI~Ts-LNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~  162 (366)
T KOG1532|consen   85 LG-PNGGIVTS-LNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTS  162 (366)
T ss_pred             CC-CCcchhhh-HHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCC
Confidence            11 00000000 00000124667788888888999999999986621   111122233344444222333444332 1 


Q ss_pred             ---cHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904        159 ---CINNALLSLEAINSRGLKLIGWVANHTQ  186 (233)
Q Consensus       159 ---~~~~~~~~~~~l~~~~~~i~GiVlN~~~  186 (233)
                         -.+..+-+...+-+.+++++ +++|+.+
T Consensus       163 p~tFMSNMlYAcSilyktklp~i-vvfNK~D  192 (366)
T KOG1532|consen  163 PTTFMSNMLYACSILYKTKLPFI-VVFNKTD  192 (366)
T ss_pred             chhHHHHHHHHHHHHHhccCCeE-EEEeccc
Confidence               13445556666678888955 7899998

>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain

Probab=98.02  E-value=0.00015  Score=58.43  Aligned_cols=200  Identities=16%  Similarity=0.145  Sum_probs=106.2

Q ss_pred             eeEEEEe-CCCCCcHHHHHHHHHHHHHHcCCeeeEEe--eeec-CcccCC-C---------CCCccchHHHHHHHHhCCC
Q psy14904          7 LHYFITG-TNTNIGKTIISCALLSEFKKRGISCIGMK--PIAS-GAYLNN-K---------NKIWFNEDVNLLNKYSNSL   72 (233)
Q Consensus         7 ~~i~i~~-~kggvGKTt~a~~La~~l~~~G~~Vl~~d--p~~~-~~~~~~-~---------~~~l~~~d~~~~~~~~~~~   72 (233)
                      |-|+||| -=.|.||=.+|+.|+..|..+|++|..+|  |-.. ++.... .         ..+-.+-|...+.++.+..
T Consensus         1 kyi~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlNvd~GtmsP~~HGEvfVt~DG~E~DlDlG~YERfl~~~   80 (255)
T cd03113           1 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTAQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDTN   80 (255)
T ss_pred             CEEEEeCCcccCcchHHHHHHHHHHHHHCCCeEEEEeecccccCCCCCCCCccceeEEEccCCCcccccccchhhhcCCC
Confidence            3567776 45789999999999999999999999976  3210 110000 0         0011111221122222221


Q ss_pred             cccccceee-eeecCCCChhhhhhhcCCCC---------CHHHHHHHHHHhh--cCCCeEEEeccCcccCccCCCCchH-
Q psy14904         73 YEFTKLINP-YLFKYPISPYTSSNLENRII---------NTSHIINCYNYLS--NLTDVIILEGIGGFSVPFHDNENSA-  139 (233)
Q Consensus        73 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~l~--~~~D~vlID~~~g~~~p~~~~~~~~-  139 (233)
                      .....++.. -.+.    .-+..++.|..+         --+.+++++.+++  .++|++|+|-.|...+.  +..-.. 
T Consensus        81 l~~~~niTtGkiy~----~vi~kER~G~ylG~TVQviPHit~eIk~~i~~~~~~~~~dv~i~EiGGTvGDi--Es~pf~E  154 (255)
T cd03113          81 LSRDNNITTGKIYS----SVIEKERRGDYLGKTVQVIPHITDEIKERIRRVAEKSGADVVIVEIGGTVGDI--ESLPFLE  154 (255)
T ss_pred             CcCccCcChHHHHH----HHHHHhhccCccCceEEECcCccHHHHHHHHHhhccCCCCEEEEEeCCccccc--cccHHHH
Confidence            110011100 0000    000113333211         1356777777765  48999999987665431  111122 


Q ss_pred             ---HHHHHhC-CCEEEEEcC--------CCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCC
Q psy14904        140 ---DLAEKLG-LPIILVIDL--------KIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVT  207 (233)
Q Consensus       140 ---~l~~~~~-~~vllV~~~--------~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~p  207 (233)
                         ++....+ ..++++.-.        +.--.+=+..+++.+++.|+...++|+|.-+ +   ..+++.++++...++|
T Consensus       155 Airq~~~~~g~~n~~~ihvt~vp~~~~~gE~KTKPtQhSVeaLRs~GIqPDgIVcRse~-p---L~e~~keKIAlFcnVp  230 (255)
T cd03113         155 AIRQMKLELGRENVLFIHVTLVPYLKAAGELKTKPTQHSVKELRSIGIQPDILVCRSEK-P---LPPEIREKIALFCDVP  230 (255)
T ss_pred             HHHHHHHHhCcCcEEEEEEeeeeeecCCCccccCchHHHHHHHHhCCCCCCEEEEeCCC-C---CchHHHHHHHHhcCCC
Confidence               2222222 112222211        1111122566889999999999999999843 2   3356778888888999


Q ss_pred             ceEecCCCC
Q psy14904        208 PLGRIPYLY  216 (233)
Q Consensus       208 vlg~IP~~~  216 (233)
                      +.+.+|...
T Consensus       231 ve~VI~~~d  239 (255)
T cd03113         231 PEAVISAPD  239 (255)
T ss_pred             HHHeeecCC
Confidence            988877644

The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=98.01  E-value=0.00015  Score=60.07  Aligned_cols=94  Identities=10%  Similarity=0.055  Sum_probs=58.6

Q ss_pred             CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhh
Q psy14904        116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANE  195 (233)
Q Consensus       116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~  195 (233)
                      ++++.+|||||....  ..  ......... .-+++|.++..+.........+.++..+.+.+ +++||++ ......+.
T Consensus        63 ~~~i~liDtPG~~~f--~~--~~~~~l~~a-D~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~i-ivvNK~D-~~~~~~~~  135 (268)
T cd04170          63 GHKINLIDTPGYADF--VG--ETRAALRAA-DAALVVVSAQSGVEVGTEKLWEFADEAGIPRI-IFINKMD-RERADFDK  135 (268)
T ss_pred             CEEEEEEECcCHHHH--HH--HHHHHHHHC-CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECCc-cCCCCHHH
Confidence            678999999976320  00  111222222 35777887766543344445556666777744 7899998 43334456


Q ss_pred             hHHHHHhhcCCCceE-ecCCCC
Q psy14904        196 NYIELTKYLNVTPLG-RIPYLY  216 (233)
Q Consensus       196 ~~~~l~~~~~~pvlg-~IP~~~  216 (233)
                      ..+.+++.++.+++. .+|...
T Consensus       136 ~~~~l~~~~~~~~~~~~ip~~~  157 (268)
T cd04170         136 TLAALQEAFGRPVVPLQLPIGE  157 (268)
T ss_pred             HHHHHHHHhCCCeEEEEecccC
Confidence            778888888887774 588765

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=97.99  E-value=0.00012  Score=56.98  Aligned_cols=98  Identities=20%  Similarity=0.239  Sum_probs=61.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeec
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFK   85 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~   85 (233)
                      +..|-|.|+ .|+|||++...+...|..+ |+++++.   .+..        ...|...+++..|.      .+....-.
T Consensus        13 ~~~i~v~Gp-~GSGKTaLie~~~~~L~~~-~~~aVI~---~Di~--------t~~Da~~l~~~~g~------~i~~v~TG   73 (202)
T COG0378          13 MLRIGVGGP-PGSGKTALIEKTLRALKDE-YKIAVIT---GDIY--------TKEDADRLRKLPGE------PIIGVETG   73 (202)
T ss_pred             eEEEEecCC-CCcCHHHHHHHHHHHHHhh-CCeEEEe---ceee--------chhhHHHHHhCCCC------eeEEeccC
Confidence            467888888 9999999999999999888 9999987   2222        12466666653221      11111111


Q ss_pred             CCCChhhhhhhcCCCCCHHHHHHHHHHhhcC---CCeEEEeccCcccCccC
Q psy14904         86 YPISPYTSSNLENRIINTSHIINCYNYLSNL---TDVIILEGIGGFSVPFH  133 (233)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~---~D~vlID~~~g~~~p~~  133 (233)
                      ..           -..+..-..+.++++...   .|+++||+.|.+..|..
T Consensus        74 ~~-----------CH~da~m~~~ai~~l~~~~~~~Dll~iEs~GNL~~~~s  113 (202)
T COG0378          74 KG-----------CHLDASMNLEAIEELVLDFPDLDLLFIESVGNLVCPFS  113 (202)
T ss_pred             Cc-----------cCCcHHHHHHHHHHHhhcCCcCCEEEEecCcceecccC
Confidence            00           011223345555555433   79999999987766654

>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]

Probab=97.89  E-value=6.9e-05  Score=64.36  Aligned_cols=38  Identities=16%  Similarity=0.215  Sum_probs=34.7

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPI   44 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~   44 (233)
                      ..+++|.|. -++||||++.-|+-.+-++|++|.++|.+
T Consensus        73 ~~~vmvvG~-vDSGKSTLt~~LaN~~l~rG~~v~iiDaD  110 (398)
T COG1341          73 VGVVMVVGP-VDSGKSTLTTYLANKLLARGRKVAIIDAD  110 (398)
T ss_pred             CcEEEEECC-cCcCHHHHHHHHHHHHhhcCceEEEEeCC
Confidence            457999999 89999999999999999999999999943

>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=97.88  E-value=0.00027  Score=60.90  Aligned_cols=144  Identities=16%  Similarity=0.231  Sum_probs=86.9

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeecCCC
Q psy14904          9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKYPI   88 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (233)
                      +.+.+..+|+||||+-+.++..+++++ +|+|+-    |-...        ..+..-++.+++..   +++  +.+.+  
T Consensus        95 ~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs----GEES~--------~QiklRA~RL~~~~---~~l--~l~aE--  154 (456)
T COG1066          95 VILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS----GEESL--------QQIKLRADRLGLPT---NNL--YLLAE--  154 (456)
T ss_pred             EEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe----CCcCH--------HHHHHHHHHhCCCc---cce--EEehh--
Confidence            344455599999999999999999999 999984    33211        12222233344321   222  22221  


Q ss_pred             ChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCC------------CCchHHHHHHhCCCEEEEEcCC
Q psy14904         89 SPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHD------------NENSADLAEKLGLPIILVIDLK  156 (233)
Q Consensus        89 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~------------~~~~~~l~~~~~~~vllV~~~~  156 (233)
                                  .+.+.+.+.+++  .++|++|||+.-.++.|-..            ......+|+..+.++++|..-.
T Consensus       155 ------------t~~e~I~~~l~~--~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGHVT  220 (456)
T COG1066         155 ------------TNLEDIIAELEQ--EKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGHVT  220 (456)
T ss_pred             ------------cCHHHHHHHHHh--cCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEEEc
Confidence                        245677777776  68999999987665544211            1233456777788888876533


Q ss_pred             C-C------cHHHHHHHHHHHH---hCCCcEEEEEEcccC
Q psy14904        157 I-G------CINNALLSLEAIN---SRGLKLIGWVANHTQ  186 (233)
Q Consensus       157 ~-~------~~~~~~~~~~~l~---~~~~~i~GiVlN~~~  186 (233)
                      . +      -++|...++=+++   ....+++..|=||+.
T Consensus       221 KeG~IAGPrvLEHmVDtVlyFEGd~~~~~RiLR~vKNRFG  260 (456)
T COG1066         221 KEGAIAGPRVLEHMVDTVLYFEGDRHSRYRILRSVKNRFG  260 (456)
T ss_pred             ccccccCchheeeeeeEEEEEeccCCCceeeeehhcccCC
Confidence            2 2      2344444433333   356777777888876

>PRK13505 formate--tetrahydrofolate ligase; Provisional

Probab=97.82  E-value=3.3e-05  Score=68.85  Aligned_cols=37  Identities=19%  Similarity=0.208  Sum_probs=34.8

Q ss_pred             CceeEEEEeCCC---CCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904          5 NFLHYFITGTNT---NIGKTIISCALLSEFKKRGISCIGM   41 (233)
Q Consensus         5 ~~~~i~i~~~kg---gvGKTt~a~~La~~l~~~G~~Vl~~   41 (233)
                      ..|+|.|||..+   |.||||+++|||..|++.|+||+++
T Consensus        54 ~~k~IlVTS~~PTp~GEGKTt~sinLA~~la~~Gkkvlli   93 (557)
T PRK13505         54 DGKLILVTAINPTPAGEGKSTVTVGLGDALNKIGKKTVIA   93 (557)
T ss_pred             CCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence            478999999999   9999999999999999999999975

>PRK05973 replicative DNA helicase; Provisional

Probab=97.81  E-value=0.00065  Score=55.15  Aligned_cols=34  Identities=21%  Similarity=0.238  Sum_probs=29.8

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.|+|. +|+|||+++.+++...+++|++|++|.
T Consensus        66 l~LIaG~-PG~GKT~lalqfa~~~a~~Ge~vlyfS   99 (237)
T PRK05973         66 LVLLGAR-PGHGKTLLGLELAVEAMKSGRTGVFFT   99 (237)
T ss_pred             EEEEEeC-CCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence            4555555 999999999999999999999999986

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.77  E-value=5.7e-05  Score=56.93  Aligned_cols=37  Identities=27%  Similarity=0.521  Sum_probs=33.1

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGM   41 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~   41 (233)
                      +++..|+|||. +||||||++.-++..|..+|++|.-|
T Consensus         3 ~~~mki~ITG~-PGvGKtTl~~ki~e~L~~~g~kvgGf   39 (179)
T COG1618           3 KMAMKIFITGR-PGVGKTTLVLKIAEKLREKGYKVGGF   39 (179)
T ss_pred             CcceEEEEeCC-CCccHHHHHHHHHHHHHhcCceeeeE
Confidence            34556999999 99999999999999999999999865

>KOG1533|consensus

Probab=97.74  E-value=5.7e-05  Score=60.27  Aligned_cols=32  Identities=13%  Similarity=0.169  Sum_probs=29.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904         10 FITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus        10 ~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .|.|+ +|+||||-|.+....|.+.|.+|.++.
T Consensus         6 vVIGP-PgSGKsTYc~g~~~fls~~gr~~~vVN   37 (290)
T KOG1533|consen    6 VVIGP-PGSGKSTYCNGMSQFLSAIGRPVAVVN   37 (290)
T ss_pred             EEEcC-CCCCccchhhhHHHHHHHhCCceEEEe
Confidence            57788 999999999999999999999999986

>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate

Probab=97.73  E-value=5.7e-05  Score=66.67  Aligned_cols=37  Identities=19%  Similarity=0.225  Sum_probs=34.2

Q ss_pred             CceeEEEEeCCC---CCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904          5 NFLHYFITGTNT---NIGKTIISCALLSEFKKRGISCIGM   41 (233)
Q Consensus         5 ~~~~i~i~~~kg---gvGKTt~a~~La~~l~~~G~~Vl~~   41 (233)
                      ..|.|.|||..+   |.||||+++|||..|++.|+||+++
T Consensus        37 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gkk~l~~   76 (524)
T cd00477          37 DGKLILVTAITPTPAGEGKTTTTIGLAQALNAHGKKAIAC   76 (524)
T ss_pred             CCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEE
Confidence            468999999888   9999999999999999999998874

FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=97.65  E-value=0.0013  Score=54.68  Aligned_cols=94  Identities=13%  Similarity=0.040  Sum_probs=56.0

Q ss_pred             CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhh
Q psy14904        116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANE  195 (233)
Q Consensus       116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~  195 (233)
                      ++.+.+|||||...  +..  ......... .-+++|+++..+--.+.....+.++..+.+++ +++||++ ......+.
T Consensus        63 ~~~i~liDTPG~~d--f~~--~~~~~l~~a-D~ailVVDa~~g~~~~t~~~~~~~~~~~~p~i-vviNK~D-~~~a~~~~  135 (270)
T cd01886          63 DHRINIIDTPGHVD--FTI--EVERSLRVL-DGAVAVFDAVAGVEPQTETVWRQADRYNVPRI-AFVNKMD-RTGADFFR  135 (270)
T ss_pred             CEEEEEEECCCcHH--HHH--HHHHHHHHc-CEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECCC-CCCCCHHH
Confidence            67899999987531  110  111112222 35777888765533444556666777888876 7899998 32223345


Q ss_pred             hHHHHHhhcCCCce-EecCCCC
Q psy14904        196 NYIELTKYLNVTPL-GRIPYLY  216 (233)
Q Consensus       196 ~~~~l~~~~~~pvl-g~IP~~~  216 (233)
                      ..+.+++.++...+ -.+|-..
T Consensus       136 ~~~~l~~~l~~~~~~~~~Pisa  157 (270)
T cd01886         136 VVEQIREKLGANPVPLQLPIGE  157 (270)
T ss_pred             HHHHHHHHhCCCceEEEecccc
Confidence            67778877775544 3466544

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>KOG2825|consensus

Probab=97.64  E-value=4.9e-05  Score=61.22  Aligned_cols=36  Identities=28%  Similarity=0.448  Sum_probs=31.2

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      -|.|+| |.||||||||-++.||..|++-+.+|+++-
T Consensus        19 lKwifV-GGKGGVGKTTcs~sLAvqla~~r~~vLiIS   54 (323)
T KOG2825|consen   19 LKWIFV-GGKGGVGKTTCSCSLAVQLAKVRESVLIIS   54 (323)
T ss_pred             eeEEEE-cCcCCcCccchhhHHHHHHhccCCceEEee
Confidence            355555 566999999999999999999999999985

>cd04168 TetM_like Tet(M)-like subfamily

Probab=97.60  E-value=0.0028  Score=51.54  Aligned_cols=87  Identities=17%  Similarity=0.136  Sum_probs=52.2

Q ss_pred             CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhh
Q psy14904        116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANE  195 (233)
Q Consensus       116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~  195 (233)
                      ++.+.++||||...  +..  ......... ..+++|.+...+--.+.....+.+++.+.+++ +++||++ ......++
T Consensus        63 ~~~i~liDTPG~~~--f~~--~~~~~l~~a-D~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~i-ivvNK~D-~~~a~~~~  135 (237)
T cd04168          63 DTKVNLIDTPGHMD--FIA--EVERSLSVL-DGAILVISAVEGVQAQTRILWRLLRKLNIPTI-IFVNKID-RAGADLEK  135 (237)
T ss_pred             CEEEEEEeCCCccc--hHH--HHHHHHHHh-CeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECcc-ccCCCHHH
Confidence            57899999986531  100  011112222 35677777665433344555666667788865 7999998 32223467


Q ss_pred             hHHHHHhhcCCCce
Q psy14904        196 NYIELTKYLNVTPL  209 (233)
Q Consensus       196 ~~~~l~~~~~~pvl  209 (233)
                      .++.+++.++.+++
T Consensus       136 ~~~~i~~~~~~~~~  149 (237)
T cd04168         136 VYQEIKEKLSSDIV  149 (237)
T ss_pred             HHHHHHHHHCCCeE
Confidence            77888887775544

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.59  E-value=0.00017  Score=54.62  Aligned_cols=36  Identities=28%  Similarity=0.349  Sum_probs=32.3

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..+|.+||. +|+||||+|..|...|..+|++|.++|
T Consensus         2 g~vIwltGl-sGsGKtTlA~~L~~~L~~~g~~~~~LD   37 (156)
T PF01583_consen    2 GFVIWLTGL-SGSGKTTLARALERRLFARGIKVYLLD   37 (156)
T ss_dssp             -EEEEEESS-TTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred             CEEEEEECC-CCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence            357899999 999999999999999999999999998

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=97.58  E-value=0.00015  Score=55.61  Aligned_cols=38  Identities=21%  Similarity=0.261  Sum_probs=35.1

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ++..+|-+||. +|+||||+|..|...|.++|+++-+.|
T Consensus        21 ~~~~viW~TGL-SGsGKSTiA~ale~~L~~~G~~~y~LD   58 (197)
T COG0529          21 QKGAVIWFTGL-SGSGKSTIANALEEKLFAKGYHVYLLD   58 (197)
T ss_pred             CCCeEEEeecC-CCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence            34568999999 999999999999999999999999998

>PRK04296 thymidine kinase; Provisional

Probab=97.54  E-value=0.00018  Score=56.59  Aligned_cols=37  Identities=27%  Similarity=0.378  Sum_probs=33.0

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKP   43 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp   43 (233)
                      ..++.++|. .|+||||.+.+++..+..+|++|++++|
T Consensus         2 g~i~litG~-~GsGKTT~~l~~~~~~~~~g~~v~i~k~   38 (190)
T PRK04296          2 AKLEFIYGA-MNSGKSTELLQRAYNYEERGMKVLVFKP   38 (190)
T ss_pred             cEEEEEECC-CCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence            356777877 8999999999999999999999999984

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=97.53  E-value=0.00054  Score=53.20  Aligned_cols=34  Identities=26%  Similarity=0.243  Sum_probs=28.9

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +++.|+|. -|+||||+-.+|.. ...+|.|++++.
T Consensus         1 Pv~ii~Gf-LGsGKTTli~~ll~-~~~~~~~~~vI~   34 (178)
T PF02492_consen    1 PVIIITGF-LGSGKTTLINHLLK-RNRQGERVAVIV   34 (178)
T ss_dssp             -EEEEEES-TTSSHHHHHHHHHH-HHTTTS-EEEEE
T ss_pred             CEEEEEcC-CCCCHHHHHHHHHH-HhcCCceeEEEE
Confidence            46788998 99999999999999 777899999986

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>cd04169 RF3 RF3 subfamily

Probab=97.53  E-value=0.0045  Score=51.31  Aligned_cols=94  Identities=17%  Similarity=0.124  Sum_probs=53.4

Q ss_pred             CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhh
Q psy14904        116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANE  195 (233)
Q Consensus       116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~  195 (233)
                      ++.+.++||||...  +..  ......... .-+++|.++..+--.+.....+.++..+.+++ +++||++ ........
T Consensus        70 ~~~i~liDTPG~~d--f~~--~~~~~l~~a-D~~IlVvda~~g~~~~~~~i~~~~~~~~~P~i-ivvNK~D-~~~a~~~~  142 (267)
T cd04169          70 DCVINLLDTPGHED--FSE--DTYRTLTAV-DSAVMVIDAAKGVEPQTRKLFEVCRLRGIPII-TFINKLD-REGRDPLE  142 (267)
T ss_pred             CEEEEEEECCCchH--HHH--HHHHHHHHC-CEEEEEEECCCCccHHHHHHHHHHHhcCCCEE-EEEECCc-cCCCCHHH
Confidence            67899999987531  000  011112222 35677777754322233344555566778854 7899998 32223345


Q ss_pred             hHHHHHhhcCCCceE-ecCCCC
Q psy14904        196 NYIELTKYLNVTPLG-RIPYLY  216 (233)
Q Consensus       196 ~~~~l~~~~~~pvlg-~IP~~~  216 (233)
                      ..+.+++.++.+++. .+|...
T Consensus       143 ~~~~l~~~l~~~~~~~~~Pi~~  164 (267)
T cd04169         143 LLDEIEEELGIDCTPLTWPIGM  164 (267)
T ss_pred             HHHHHHHHHCCCceeEEecccC
Confidence            577888888876664 366543

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>TIGR02012 tigrfam_recA protein RecA

Probab=97.52  E-value=0.00081  Score=56.97  Aligned_cols=36  Identities=22%  Similarity=0.151  Sum_probs=32.7

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..++.|.|. +|+||||+|.+++...+++|.+|+++|
T Consensus        55 G~iteI~G~-~GsGKTtLaL~~~~~~~~~g~~v~yId   90 (321)
T TIGR02012        55 GRIIEIYGP-ESSGKTTLALHAIAEAQKAGGTAAFID   90 (321)
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence            357778887 999999999999999999999999998

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.50  E-value=0.00079  Score=57.13  Aligned_cols=36  Identities=22%  Similarity=0.132  Sum_probs=32.3

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      -+++-|.|. +|+||||+|.+++...+++|.+++++|
T Consensus        55 G~iteI~Gp-~GsGKTtLal~~~~~~~~~g~~~vyId   90 (325)
T cd00983          55 GRIIEIYGP-ESSGKTTLALHAIAEAQKLGGTVAFID   90 (325)
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence            346778886 999999999999999999999999998

RecA couples ATP hydrolysis to DNA strand exchange.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.48  E-value=0.0002  Score=51.55  Aligned_cols=31  Identities=26%  Similarity=0.470  Sum_probs=26.4

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +|+|+|. +|+||||+|..||..+   |..++-+|
T Consensus         1 vI~I~G~-~gsGKST~a~~La~~~---~~~~i~~d   31 (121)
T PF13207_consen    1 VIIISGP-PGSGKSTLAKELAERL---GFPVISMD   31 (121)
T ss_dssp             EEEEEES-TTSSHHHHHHHHHHHH---TCEEEEEH
T ss_pred             CEEEECC-CCCCHHHHHHHHHHHH---CCeEEEec
Confidence            5889998 9999999999999988   77776555

...

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=97.44  E-value=0.0039  Score=54.09  Aligned_cols=146  Identities=16%  Similarity=0.200  Sum_probs=79.8

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeecC
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKY   86 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~   86 (233)
                      ..+.|+|. +|+||||++..++..++++|.+|+|+.   . -...        .....-....+...   +++  +.+..
T Consensus        83 slvLI~G~-pG~GKStLllq~a~~~a~~g~~VlYvs---~-EEs~--------~qi~~Ra~rlg~~~---~~l--~l~~e  144 (372)
T cd01121          83 SVILIGGD-PGIGKSTLLLQVAARLAKRGGKVLYVS---G-EESP--------EQIKLRADRLGIST---ENL--YLLAE  144 (372)
T ss_pred             eEEEEEeC-CCCCHHHHHHHHHHHHHhcCCeEEEEE---C-CcCH--------HHHHHHHHHcCCCc---ccE--EEEcc
Confidence            45666666 999999999999999999999999997   1 1110        11111112233221   122  11110


Q ss_pred             CCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccC----CC--------CchHHHHHHhCCCEEEEEc
Q psy14904         87 PISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFH----DN--------ENSADLAEKLGLPIILVID  154 (233)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~----~~--------~~~~~l~~~~~~~vllV~~  154 (233)
                                    ...+.+.+.+++  .+.++|+||....+..+-.    ..        .....+++..+.+++++..
T Consensus       145 --------------~~le~I~~~i~~--~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvgh  208 (372)
T cd01121         145 --------------TNLEDILASIEE--LKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGH  208 (372)
T ss_pred             --------------CcHHHHHHHHHh--cCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEee
Confidence                          123455555543  4789999999654432110    00        1134567778888888865


Q ss_pred             CCCC-------cHHHHHHHHHHHH---hCCCcEEEEEEcccC
Q psy14904        155 LKIG-------CINNALLSLEAIN---SRGLKLIGWVANHTQ  186 (233)
Q Consensus       155 ~~~~-------~~~~~~~~~~~l~---~~~~~i~GiVlN~~~  186 (233)
                      ....       .++++...+=.++   ....+++.++=||+.
T Consensus       209 vtk~g~~aG~~~leh~vD~Vi~le~~~~~~~R~Lri~KnR~g  250 (372)
T cd01121         209 VTKEGSIAGPKVLEHMVDTVLYFEGDRHSEYRILRSVKNRFG  250 (372)
T ss_pred             ccCCCcccCcccchhhceEEEEEEcCCCCcEEEEEEEeCCCC
Confidence            3321       1233222211222   123566777778765

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>PRK00889 adenylylsulfate kinase; Provisional

Probab=97.44  E-value=0.0003  Score=54.32  Aligned_cols=37  Identities=24%  Similarity=0.354  Sum_probs=33.6

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.++|.++|. +|+||||++..|+..+...|.++.++|
T Consensus         3 ~g~~i~~~G~-~GsGKST~a~~la~~l~~~g~~v~~id   39 (175)
T PRK00889          3 RGVTVWFTGL-SGAGKTTIARALAEKLREAGYPVEVLD   39 (175)
T ss_pred             CCeEEEEECC-CCCCHHHHHHHHHHHHHHcCCeEEEEc
Confidence            4568999988 999999999999999999999999886

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=97.42  E-value=0.00034  Score=54.37  Aligned_cols=36  Identities=22%  Similarity=0.312  Sum_probs=30.3

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.+++.|+ +|+|||.+|..++..+.++|++|.+++
T Consensus        47 ~~~l~l~G~-~G~GKThLa~ai~~~~~~~g~~v~f~~   82 (178)
T PF01695_consen   47 GENLILYGP-PGTGKTHLAVAIANEAIRKGYSVLFIT   82 (178)
T ss_dssp             --EEEEEES-TTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred             CeEEEEEhh-HhHHHHHHHHHHHHHhccCCcceeEee
Confidence            457999998 999999999999999999999999987

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>COG2403 Predicted GTPase [General function prediction only]

Probab=97.41  E-value=0.00021  Score=60.68  Aligned_cols=41  Identities=20%  Similarity=0.261  Sum_probs=37.3

Q ss_pred             CCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          2 INKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         2 ~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +....++|.|+++..|+|||+++.-+++.|+++||||+++.
T Consensus       122 ~~~ekPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~vVr  162 (449)
T COG2403         122 LKLEKPVIAVTATRTGVGKSAVSRYVARLLRERGYRVCVVR  162 (449)
T ss_pred             hhhcCceEEEEEeccccchhHHHHHHHHHHHHcCCceEEEe
Confidence            33456799999999999999999999999999999999987

>PRK11823 DNA repair protein RadA; Provisional

Probab=97.40  E-value=0.004  Score=55.41  Aligned_cols=35  Identities=17%  Similarity=0.248  Sum_probs=31.0

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .++.|+|. +|+||||++..++..++++|.+|+|++
T Consensus        81 s~~lI~G~-pG~GKTtL~lq~a~~~a~~g~~vlYvs  115 (446)
T PRK11823         81 SVVLIGGD-PGIGKSTLLLQVAARLAAAGGKVLYVS  115 (446)
T ss_pred             EEEEEECC-CCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence            45666666 999999999999999999999999997

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=97.40  E-value=0.00057  Score=53.40  Aligned_cols=66  Identities=20%  Similarity=0.165  Sum_probs=43.8

Q ss_pred             cCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904        115 NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ  186 (233)
Q Consensus       115 ~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~  186 (233)
                      ..+.+.+|||||...  +.   ....-+.....-+++|+++..+--.++...++.++..+++ .-+++||++
T Consensus        68 ~~~~i~~iDtPG~~~--f~---~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p-~ivvlNK~D  133 (188)
T PF00009_consen   68 NNRKITLIDTPGHED--FI---KEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIP-IIVVLNKMD  133 (188)
T ss_dssp             SSEEEEEEEESSSHH--HH---HHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-S-EEEEEETCT
T ss_pred             cccceeecccccccc--ee---ecccceecccccceeeeecccccccccccccccccccccc-eEEeeeecc
Confidence            567899999997531  10   0111112223457888888766555677778888888999 668999999

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=97.40  E-value=0.0022  Score=50.98  Aligned_cols=36  Identities=14%  Similarity=0.218  Sum_probs=31.5

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+++|.++|. .|+||||+..+|+..+. ++++|.+++
T Consensus        21 ~~~~i~~~G~-~gsGKTTli~~l~~~~~-~~~~v~v~~   56 (207)
T TIGR00073        21 GLVVLNFMSS-PGSGKTTLIEKLIDNLK-DEVKIAVIE   56 (207)
T ss_pred             CcEEEEEECC-CCCCHHHHHHHHHHHHh-cCCeEEEEE
Confidence            5789999999 99999999999998875 467999987

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=97.38  E-value=0.0018  Score=56.24  Aligned_cols=38  Identities=24%  Similarity=0.227  Sum_probs=33.8

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeec
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIAS   46 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~   46 (233)
                      -+|.|+|. .|+||||++..|...|..+ ++|.++|...+
T Consensus         6 ~~i~i~G~-~gsGKTTl~~~l~~~l~~~-~~V~~ik~~~~   43 (369)
T PRK14490          6 FEIAFCGY-SGSGKTTLITALVRRLSER-FSVGYYKHGCH   43 (369)
T ss_pred             EEEEEEeC-CCCCHHHHHHHHHHHHhhC-ceEEEEEeCCC
Confidence            47899998 8999999999999999999 99999994333

>TIGR00416 sms DNA repair protein RadA

Probab=97.35  E-value=0.005  Score=54.90  Aligned_cols=35  Identities=17%  Similarity=0.293  Sum_probs=30.7

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .++.|+|. +|+||||++..++..++++|.+|+|+.
T Consensus        95 svilI~G~-pGsGKTTL~lq~a~~~a~~g~kvlYvs  129 (454)
T TIGR00416        95 SLILIGGD-PGIGKSTLLLQVACQLAKNQMKVLYVS  129 (454)
T ss_pred             eEEEEEcC-CCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence            45566666 999999999999999999999999997

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>PRK07667 uridine kinase; Provisional

Probab=97.35  E-value=0.00038  Score=54.80  Aligned_cols=35  Identities=26%  Similarity=0.299  Sum_probs=32.1

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+|+|+|. +|+||||+|..|+..|.+.|.++.++.
T Consensus        18 ~iIgI~G~-~gsGKStla~~L~~~l~~~~~~~~~i~   52 (193)
T PRK07667         18 FILGIDGL-SRSGKTTFVANLKENMKQEGIPFHIFH   52 (193)
T ss_pred             EEEEEECC-CCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence            57888888 999999999999999999999988876

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=97.34  E-value=0.0076  Score=54.74  Aligned_cols=87  Identities=16%  Similarity=0.103  Sum_probs=51.5

Q ss_pred             CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhh
Q psy14904        116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANE  195 (233)
Q Consensus       116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~  195 (233)
                      ++.+.++||||...  +..  ......... .-+++|.++..+--.++....+..+..+++++ +++||++ .......+
T Consensus        78 ~~~inliDTPG~~d--f~~--~~~~~l~~a-D~aIlVvDa~~gv~~~t~~l~~~~~~~~iPii-v~iNK~D-~~~a~~~~  150 (526)
T PRK00741         78 DCLINLLDTPGHED--FSE--DTYRTLTAV-DSALMVIDAAKGVEPQTRKLMEVCRLRDTPIF-TFINKLD-RDGREPLE  150 (526)
T ss_pred             CEEEEEEECCCchh--hHH--HHHHHHHHC-CEEEEEEecCCCCCHHHHHHHHHHHhcCCCEE-EEEECCc-ccccCHHH
Confidence            57799999987631  110  011112222 35777877765432334445566667788855 7899998 32223345


Q ss_pred             hHHHHHhhcCCCce
Q psy14904        196 NYIELTKYLNVTPL  209 (233)
Q Consensus       196 ~~~~l~~~~~~pvl  209 (233)
                      .++.+++.++.+++
T Consensus       151 ~l~~i~~~l~~~~~  164 (526)
T PRK00741        151 LLDEIEEVLGIACA  164 (526)
T ss_pred             HHHHHHHHhCCCCe
Confidence            67778887787655

>PF13245 AAA_19: Part of AAA domain

Probab=97.34  E-value=0.00051  Score=45.60  Aligned_cols=35  Identities=20%  Similarity=0.316  Sum_probs=28.6

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHc----CCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKR----GISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~----G~~Vl~~d   42 (233)
                      +.+.|.+. +|+|||++..+++..+...    |.+|+++-
T Consensus        11 ~~~vv~g~-pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a   49 (76)
T PF13245_consen   11 PLFVVQGP-PGTGKTTTLAARIAELLAARADPGKRVLVLA   49 (76)
T ss_pred             CeEEEECC-CCCCHHHHHHHHHHHHHHHhcCCCCeEEEEC
Confidence            34445666 9999999999999999876    88999974

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.30  E-value=0.00052  Score=54.58  Aligned_cols=39  Identities=23%  Similarity=0.260  Sum_probs=32.1

Q ss_pred             CCCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          1 MINKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ||.++..+|+|+|. +|+||||++..|+..|  .+.++.++.
T Consensus         1 ~~~~~~~iI~I~G~-sGsGKTTl~~~l~~~l--~~~~~~~i~   39 (209)
T PRK05480          1 MMMKKPIIIGIAGG-SGSGKTTVASTIYEEL--GDESIAVIP   39 (209)
T ss_pred             CCCCCCEEEEEECC-CCCCHHHHHHHHHHHh--CCCceEEEe
Confidence            56666778999998 9999999999999998  455676664

>PRK15453 phosphoribulokinase; Provisional

Probab=97.29  E-value=0.00051  Score=56.92  Aligned_cols=38  Identities=18%  Similarity=0.295  Sum_probs=33.4

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ++..+|.|+|. +|+||||++..|+..|.+.|.++.+++
T Consensus         3 ~k~piI~ItG~-SGsGKTTva~~l~~if~~~~~~~~vi~   40 (290)
T PRK15453          3 AKHPIIAVTGS-SGAGTTTVKRAFEKIFRRENINAAVVE   40 (290)
T ss_pred             CCCcEEEEECC-CCCCHHHHHHHHHHHHhhcCCCeEEEe
Confidence            44678999999 999999999999999988888888776

>PHA00729 NTP-binding motif containing protein

Probab=97.29  E-value=0.00048  Score=55.31  Aligned_cols=27  Identities=22%  Similarity=0.299  Sum_probs=23.7

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFK   32 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~   32 (233)
                      .+..|.|+|+ +|+||||+|..|+..+.
T Consensus        16 ~f~nIlItG~-pGvGKT~LA~aLa~~l~   42 (226)
T PHA00729         16 GFVSAVIFGK-QGSGKTTYALKVARDVF   42 (226)
T ss_pred             CeEEEEEECC-CCCCHHHHHHHHHHHHH
Confidence            3457999998 99999999999999875

>cd01394 radB RadB

Probab=97.29  E-value=0.0005  Score=55.02  Aligned_cols=35  Identities=23%  Similarity=0.186  Sum_probs=31.3

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .++.|+|. +|+||||++..+|..++.+|.+|++++
T Consensus        20 ~i~~i~G~-~GsGKT~l~~~~a~~~~~~g~~v~yi~   54 (218)
T cd01394          20 TVTQVYGP-PGTGKTNIAIQLAVETAGQGKKVAYID   54 (218)
T ss_pred             eEEEEECC-CCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence            45667775 999999999999999999999999997

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.27  E-value=0.00059  Score=44.33  Aligned_cols=32  Identities=25%  Similarity=0.353  Sum_probs=27.7

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +|+|+|. .|+||||++..|+..|  .+.++.+++
T Consensus         1 ~i~i~G~-~gsGKst~~~~l~~~l--~~~~~~~i~   32 (69)
T cd02019           1 IIAITGG-SGSGKSTVAKKLAEQL--GGRSVVVLD   32 (69)
T ss_pred             CEEEECC-CCCCHHHHHHHHHHHh--cCCCEEEEe
Confidence            4778887 9999999999999999  677888776

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.25  E-value=0.0032  Score=50.49  Aligned_cols=36  Identities=22%  Similarity=0.065  Sum_probs=31.6

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcC------CeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRG------ISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G------~~Vl~~d   42 (233)
                      -.++.|+|. +|+|||+++..++......|      .+|++++
T Consensus        19 g~v~~I~G~-~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~   60 (226)
T cd01393          19 GRITEIFGE-FGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID   60 (226)
T ss_pred             CcEEEEeCC-CCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence            357788887 99999999999999988887      8999998

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>PRK09354 recA recombinase A; Provisional

Probab=97.24  E-value=0.003  Score=54.10  Aligned_cols=36  Identities=22%  Similarity=0.147  Sum_probs=32.4

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+++-|.|. +|+||||+|.+++...+++|.+++++|
T Consensus        60 G~IteI~G~-~GsGKTtLal~~~~~~~~~G~~~~yId   95 (349)
T PRK09354         60 GRIVEIYGP-ESSGKTTLALHAIAEAQKAGGTAAFID   95 (349)
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence            356778886 999999999999999999999999998

>PRK13506 formate--tetrahydrofolate ligase; Provisional

Probab=97.24  E-value=0.00043  Score=61.83  Aligned_cols=35  Identities=17%  Similarity=0.173  Sum_probs=32.3

Q ss_pred             CceeEEEEeCCC---CCcHHHHHHHHHHHHHHcCCeee
Q psy14904          5 NFLHYFITGTNT---NIGKTIISCALLSEFKKRGISCI   39 (233)
Q Consensus         5 ~~~~i~i~~~kg---gvGKTt~a~~La~~l~~~G~~Vl   39 (233)
                      ..|+|.|||.-+   |.||||+++|||..|++.|+|+.
T Consensus        53 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gk~~i   90 (578)
T PRK13506         53 KGKLVLVTAITPTPLGEGKTVTTIGLTQGLNALGQKVC   90 (578)
T ss_pred             CCeEEEEEecCCCCCCCCHHHHHHHHHHHHHHhCCceE
Confidence            468999999888   99999999999999999999973

>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP

Probab=97.23  E-value=0.0028  Score=48.23  Aligned_cols=30  Identities=20%  Similarity=0.068  Sum_probs=26.6

Q ss_pred             eCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904         13 GTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus        13 ~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      -+..|.||||.|.++|...+.+|+||+++.
T Consensus         8 y~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQ   37 (159)
T cd00561           8 YTGNGKGKTTAALGLALRALGHGYRVGVVQ   37 (159)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence            344699999999999999999999999954

This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=97.23  E-value=0.00053  Score=53.24  Aligned_cols=33  Identities=21%  Similarity=0.262  Sum_probs=30.0

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.|+|. +|+|||+++..++...+++|.+|+++.
T Consensus         2 ~li~G~-~G~GKT~l~~~~~~~~~~~g~~v~~~s   34 (187)
T cd01124           2 TLLSGG-PGTGKTTFALQFLYAGLARGEPGLYVT   34 (187)
T ss_pred             EEEEcC-CCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence            566777 999999999999999999999999986

A related protein is found in archaea.

>PRK00007 elongation factor G; Reviewed

Probab=97.19  E-value=0.0096  Score=55.98  Aligned_cols=92  Identities=12%  Similarity=0.059  Sum_probs=56.0

Q ss_pred             CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhh
Q psy14904        116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANE  195 (233)
Q Consensus       116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~  195 (233)
                      ++.+.+|||||...  ..   ....-+.....-+++|+++..+--.+.....+.+++.+.+.+ +++||++.. ......
T Consensus        74 ~~~~~liDTPG~~~--f~---~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~i-v~vNK~D~~-~~~~~~  146 (693)
T PRK00007         74 DHRINIIDTPGHVD--FT---IEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRI-AFVNKMDRT-GADFYR  146 (693)
T ss_pred             CeEEEEEeCCCcHH--HH---HHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEE-EEEECCCCC-CCCHHH
Confidence            67899999997531  11   011112222235788888766544456666777778888876 899999832 223445


Q ss_pred             hHHHHHhhcCCCce-EecCC
Q psy14904        196 NYIELTKYLNVTPL-GRIPY  214 (233)
Q Consensus       196 ~~~~l~~~~~~pvl-g~IP~  214 (233)
                      ..+.+++.++.... ..||.
T Consensus       147 ~~~~i~~~l~~~~~~~~ipi  166 (693)
T PRK00007        147 VVEQIKDRLGANPVPIQLPI  166 (693)
T ss_pred             HHHHHHHHhCCCeeeEEecC
Confidence            66777777665332 34554

>TIGR02236 recomb_radA DNA repair and recombination protein RadA

Probab=97.19  E-value=0.005  Score=52.11  Aligned_cols=36  Identities=19%  Similarity=0.093  Sum_probs=28.0

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHH------cCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKK------RGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~------~G~~Vl~~d   42 (233)
                      ..++-|+|. +|+|||++|..++...+.      .+.+|+++|
T Consensus        95 g~i~ei~G~-~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~  136 (310)
T TIGR02236        95 QAITEVFGE-FGSGKTQICHQLAVNVQLPEEKGGLGGKAVYID  136 (310)
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHHHhcCCcccCCCcceEEEEE
Confidence            345667776 999999999999888653      123999998

This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=97.19  E-value=0.005  Score=51.37  Aligned_cols=98  Identities=13%  Similarity=0.233  Sum_probs=59.7

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeee
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYL   83 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~   83 (233)
                      +...++.|+|. +|+||||+...|...|... +++.++.   .+. ..       ..|...++. .|.+      .  +.
T Consensus       102 ~~~~~v~l~G~-pGsGKTTLl~~l~~~l~~~-~~~~VI~---gD~-~t-------~~Da~rI~~-~g~p------v--vq  159 (290)
T PRK10463        102 RKQLVLNLVSS-PGSGKTTLLTETLMRLKDS-VPCAVIE---GDQ-QT-------VNDAARIRA-TGTP------A--IQ  159 (290)
T ss_pred             cCCeEEEEECC-CCCCHHHHHHHHHHHhccC-CCEEEEC---CCc-Cc-------HHHHHHHHh-cCCc------E--EE
Confidence            34668899998 9999999999999999655 4777775   111 11       125444443 3321      1  11


Q ss_pred             ecCCCChhhhhhhcCCCCCHHHHHHHHHHhh-cCCCeEEEeccCcccCcc
Q psy14904         84 FKYPISPYTSSNLENRIINTSHIINCYNYLS-NLTDVIILEGIGGFSVPF  132 (233)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~D~vlID~~~g~~~p~  132 (233)
                      ......         -..+...+.++++++. .+.|++|||+.|.+..|.
T Consensus       160 i~tG~~---------Chl~a~mv~~Al~~L~~~~~d~liIEnvGnLvcPa  200 (290)
T PRK10463        160 VNTGKG---------CHLDAQMIADAAPRLPLDDNGILFIENVGNLVCPA  200 (290)
T ss_pred             ecCCCC---------CcCcHHHHHHHHHHHhhcCCcEEEEECCCCccCCC
Confidence            110000         0123345677777765 458999999998766664

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=97.18  E-value=0.00063  Score=52.90  Aligned_cols=34  Identities=24%  Similarity=0.313  Sum_probs=30.3

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +|+|+|. +|+||||+|..|+..|...|.++.++.
T Consensus         1 ii~i~G~-sgsGKttla~~l~~~l~~~~~~~~~i~   34 (179)
T cd02028           1 VVGIAGP-SGSGKTTFAKKLSNQLRVNGIGPVVIS   34 (179)
T ss_pred             CEEEECC-CCCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            4788887 999999999999999999999888874

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>cd01884 EF_Tu EF-Tu subfamily

Probab=97.18  E-value=0.015  Score=45.80  Aligned_cols=66  Identities=14%  Similarity=0.018  Sum_probs=39.6

Q ss_pred             CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904        116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ  186 (233)
Q Consensus       116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~  186 (233)
                      ++.+.+|||||...  +   .....-+.....-+++|+++..+--.+....++.+.+.+.+.+-+++||++
T Consensus        64 ~~~i~~iDtPG~~~--~---~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D  129 (195)
T cd01884          64 NRHYAHVDCPGHAD--Y---IKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKAD  129 (195)
T ss_pred             CeEEEEEECcCHHH--H---HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCC
Confidence            56789999997521  1   011111111223577788876654344555666777778764557799998

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=97.17  E-value=0.016  Score=44.62  Aligned_cols=65  Identities=18%  Similarity=0.074  Sum_probs=36.1

Q ss_pred             CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904        116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ  186 (233)
Q Consensus       116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~  186 (233)
                      ..+++++|+||....  . . ......... .-+++|.+...+........++.++..+.+ .-+|+||.+
T Consensus        61 ~~~~~liDtpG~~~~--~-~-~~~~~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-i~iv~nK~D  125 (189)
T cd00881          61 DRRVNFIDTPGHEDF--S-S-EVIRGLSVS-DGAILVVDANEGVQPQTREHLRIAREGGLP-IIVAINKID  125 (189)
T ss_pred             CEEEEEEeCCCcHHH--H-H-HHHHHHHhc-CEEEEEEECCCCCcHHHHHHHHHHHHCCCC-eEEEEECCC
Confidence            578999999863210  0 0 111112222 356777776654323333445555556777 447899998

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=97.16  E-value=0.00083  Score=54.03  Aligned_cols=36  Identities=31%  Similarity=0.187  Sum_probs=32.2

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      -.++.|+|. +|+|||+++..++...++.|.+|++++
T Consensus        23 g~i~~i~G~-~GsGKT~l~~~la~~~~~~~~~v~yi~   58 (225)
T PRK09361         23 GTITQIYGP-PGSGKTNICLQLAVEAAKNGKKVIYID   58 (225)
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence            346677776 999999999999999999999999998

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=97.16  E-value=0.00085  Score=53.28  Aligned_cols=36  Identities=22%  Similarity=0.160  Sum_probs=32.9

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      -.++.|+|. +|+|||+++..++...+++|.+|++++
T Consensus        12 g~i~~i~G~-~GsGKT~l~~~~~~~~~~~g~~v~yi~   47 (209)
T TIGR02237        12 GTITQIYGP-PGSGKTNICMILAVNAARQGKKVVYID   47 (209)
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence            457788887 999999999999999999999999998

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=97.16  E-value=0.00074  Score=55.54  Aligned_cols=36  Identities=28%  Similarity=0.361  Sum_probs=33.0

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.+++.|+ +|+|||.++++++..+.++|.+|+++.
T Consensus       105 ~~nl~l~G~-~G~GKThLa~Ai~~~l~~~g~sv~f~~  140 (254)
T COG1484         105 GENLVLLGP-PGVGKTHLAIAIGNELLKAGISVLFIT  140 (254)
T ss_pred             CCcEEEECC-CCCcHHHHHHHHHHHHHHcCCeEEEEE
Confidence            457888888 999999999999999999999999986

>TIGR00484 EF-G translation elongation factor EF-G

Probab=97.13  E-value=0.017  Score=54.25  Aligned_cols=92  Identities=12%  Similarity=0.053  Sum_probs=52.8

Q ss_pred             CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhh
Q psy14904        116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANE  195 (233)
Q Consensus       116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~  195 (233)
                      ++.+.++||||...  ..   ....-+.....-+++|.+...+--.+.....+.+++.+.+++ +++||++ -.....+.
T Consensus        74 ~~~i~liDTPG~~~--~~---~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D-~~~~~~~~  146 (689)
T TIGR00484        74 GHRINIIDTPGHVD--FT---VEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRI-AFVNKMD-KTGANFLR  146 (689)
T ss_pred             CeEEEEEECCCCcc--hh---HHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEE-EEEECCC-CCCCCHHH
Confidence            67899999986531  11   111222222235777777765433334455566677788865 7899998 32222345


Q ss_pred             hHHHHHhhcCCCce-EecCC
Q psy14904        196 NYIELTKYLNVTPL-GRIPY  214 (233)
Q Consensus       196 ~~~~l~~~~~~pvl-g~IP~  214 (233)
                      ..+.+++.++...+ ..||.
T Consensus       147 ~~~~i~~~l~~~~~~~~ipi  166 (689)
T TIGR00484       147 VVNQIKQRLGANAVPIQLPI  166 (689)
T ss_pred             HHHHHHHHhCCCceeEEecc
Confidence            66777776664332 34554

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.12  E-value=0.0005  Score=54.09  Aligned_cols=35  Identities=23%  Similarity=0.282  Sum_probs=30.9

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGM   41 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~   41 (233)
                      |+-|.+||- +|+||||.|.+||..|.+++.+|...
T Consensus         1 mpLiIlTGy-PgsGKTtfakeLak~L~~~i~~vi~l   35 (261)
T COG4088           1 MPLIILTGY-PGSGKTTFAKELAKELRQEIWRVIHL   35 (261)
T ss_pred             CceEEEecC-CCCCchHHHHHHHHHHHHhhhhcccc
Confidence            456778888 99999999999999999999988764

>PRK08233 hypothetical protein; Provisional

Probab=97.09  E-value=0.00056  Score=52.90  Aligned_cols=34  Identities=18%  Similarity=0.144  Sum_probs=27.2

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..+|+|+|. +|+||||+|..|+..|.  +..+..+|
T Consensus         3 ~~iI~I~G~-~GsGKtTla~~L~~~l~--~~~~~~~d   36 (182)
T PRK08233          3 TKIITIAAV-SGGGKTTLTERLTHKLK--NSKALYFD   36 (182)
T ss_pred             ceEEEEECC-CCCCHHHHHHHHHhhCC--CCceEEEC
Confidence            468999999 69999999999999884  33565555

>PRK06526 transposase; Provisional

Probab=97.08  E-value=0.00054  Score=56.33  Aligned_cols=35  Identities=17%  Similarity=0.119  Sum_probs=31.3

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.+++.|+ +|+|||+++.+|+..+.++|++|.++.
T Consensus        99 ~nlll~Gp-~GtGKThLa~al~~~a~~~g~~v~f~t  133 (254)
T PRK06526         99 ENVVFLGP-PGTGKTHLAIGLGIRACQAGHRVLFAT  133 (254)
T ss_pred             ceEEEEeC-CCCchHHHHHHHHHHHHHCCCchhhhh
Confidence            46888887 999999999999999999999997753

>PRK06696 uridine kinase; Validated

Probab=97.08  E-value=0.0011  Score=53.27  Aligned_cols=34  Identities=41%  Similarity=0.439  Sum_probs=30.1

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG   40 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~   40 (233)
                      ..+|+|+|. +|+||||+|..|+..|...|.+|..
T Consensus        22 ~~iI~I~G~-sgsGKSTlA~~L~~~l~~~g~~v~~   55 (223)
T PRK06696         22 PLRVAIDGI-TASGKTTFADELAEEIKKRGRPVIR   55 (223)
T ss_pred             ceEEEEECC-CCCCHHHHHHHHHHHHHHcCCeEEE
Confidence            457888887 9999999999999999988988876

>PRK07952 DNA replication protein DnaC; Validated

Probab=97.07  E-value=0.0011  Score=54.18  Aligned_cols=35  Identities=23%  Similarity=0.426  Sum_probs=30.5

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..+++.|. +|+|||+++.+++..+.++|++|+++.
T Consensus       100 ~~~~l~G~-~GtGKThLa~aia~~l~~~g~~v~~it  134 (244)
T PRK07952        100 ASFIFSGK-PGTGKNHLAAAICNELLLRGKSVLIIT  134 (244)
T ss_pred             ceEEEECC-CCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence            35666665 999999999999999999999999985

>PRK12739 elongation factor G; Reviewed

Probab=97.04  E-value=0.0079  Score=56.53  Aligned_cols=93  Identities=12%  Similarity=0.064  Sum_probs=55.2

Q ss_pred             cCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhh
Q psy14904        115 NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFAN  194 (233)
Q Consensus       115 ~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~  194 (233)
                      .++.+.+|||||...  +..   ...-+.....-+++|+++..+--.+....++.+++.+.+++ +++||++ ......+
T Consensus        71 ~~~~i~liDTPG~~~--f~~---e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~i-v~iNK~D-~~~~~~~  143 (691)
T PRK12739         71 KGHRINIIDTPGHVD--FTI---EVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRI-VFVNKMD-RIGADFF  143 (691)
T ss_pred             CCEEEEEEcCCCHHH--HHH---HHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECCC-CCCCCHH
Confidence            367899999997531  111   11112222235788888766533344556666677888876 8899998 3222334


Q ss_pred             hhHHHHHhhcCCCce-EecCC
Q psy14904        195 ENYIELTKYLNVTPL-GRIPY  214 (233)
Q Consensus       195 ~~~~~l~~~~~~pvl-g~IP~  214 (233)
                      ...+.+++.++...+ ..+|.
T Consensus       144 ~~~~~i~~~l~~~~~~~~iPi  164 (691)
T PRK12739        144 RSVEQIKDRLGANAVPIQLPI  164 (691)
T ss_pred             HHHHHHHHHhCCCceeEEecc
Confidence            566777776665333 34554

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=97.03  E-value=0.00073  Score=51.63  Aligned_cols=28  Identities=36%  Similarity=0.420  Sum_probs=23.2

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIG   40 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~   40 (233)
                      .|+|||+ +|+||||+|-.|+    ..|+++.-
T Consensus         2 ~I~ITGT-PGvGKTT~~~~L~----~lg~~~i~   29 (180)
T COG1936           2 LIAITGT-PGVGKTTVCKLLR----ELGYKVIE   29 (180)
T ss_pred             eEEEeCC-CCCchHHHHHHHH----HhCCceee
Confidence            5899999 9999999998777    45777754

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=97.03  E-value=0.0011  Score=54.60  Aligned_cols=34  Identities=24%  Similarity=0.333  Sum_probs=31.2

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +|.|+|. +|+||||++..|...|.+.|.++.+++
T Consensus         1 IIgItG~-SGSGKTTv~~~l~~~l~~~g~~v~vI~   34 (277)
T cd02029           1 VIAVTGS-SGAGTTTVKRAFEHIFAREGIHPAVVE   34 (277)
T ss_pred             CEEEECC-CCCCHHHHHHHHHHHHHhcCCceEEEe
Confidence            4789998 999999999999999999999998886

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown

Probab=97.03  E-value=0.001  Score=53.69  Aligned_cols=38  Identities=37%  Similarity=0.422  Sum_probs=34.6

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHH-HcCCeeeEEeeee
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFK-KRGISCIGMKPIA   45 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~-~~G~~Vl~~dp~~   45 (233)
                      +-++|.|+ +|+|||+++..|...+. +.|.++++|||.+
T Consensus        24 ~H~~I~G~-TGsGKS~~~~~ll~~l~~~~~~~~ii~D~~G   62 (229)
T PF01935_consen   24 RHIAIFGT-TGSGKSNTVKVLLEELLKKKGAKVIIFDPHG   62 (229)
T ss_pred             ceEEEECC-CCCCHHHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence            56899999 99999999999999999 8999999999743

It contains several conserved aspartates and histidines that could be metal ligands.

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=97.01  E-value=0.0013  Score=54.32  Aligned_cols=35  Identities=20%  Similarity=0.246  Sum_probs=31.5

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .++.|+|. +|+|||++|..++...+++|.+|+++.
T Consensus        37 s~~lI~G~-pGtGKT~l~~qf~~~~a~~Ge~vlyis   71 (259)
T TIGR03878        37 SVINITGV-SDTGKSLMVEQFAVTQASRGNPVLFVT   71 (259)
T ss_pred             cEEEEEcC-CCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence            46777777 999999999999999999999999997

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=96.99  E-value=0.0011  Score=52.19  Aligned_cols=29  Identities=34%  Similarity=0.432  Sum_probs=27.1

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGIS   37 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~   37 (233)
                      +|.|+|. +|+||||+|..|+..|.+.|..
T Consensus         1 IIgI~G~-sgSGKTTla~~L~~~L~~~~~~   29 (194)
T PF00485_consen    1 IIGIAGP-SGSGKTTLAKRLAQILNKRGIP   29 (194)
T ss_dssp             EEEEEES-TTSSHHHHHHHHHHHHTTCTTT
T ss_pred             CEEEECC-CCCCHHHHHHHHHHHhCccCcC
Confidence            5899999 9999999999999999998877

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=96.98  E-value=0.0013  Score=49.50  Aligned_cols=34  Identities=26%  Similarity=0.384  Sum_probs=29.7

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +++|+|. +|+||||++..|+..+...|.++.+++
T Consensus         1 ~i~i~G~-~GsGKSTla~~L~~~l~~~g~~~~~i~   34 (149)
T cd02027           1 VIWLTGL-SGSGKSTIARALEEKLFQRGRPVYVLD   34 (149)
T ss_pred             CEEEEcC-CCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence            3677777 999999999999999999998887775

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=96.98  E-value=0.0014  Score=49.25  Aligned_cols=33  Identities=21%  Similarity=0.328  Sum_probs=30.0

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.|+|. +|+||||++..++..++.+|.+|++++
T Consensus         2 ~~i~G~-~G~GKT~l~~~i~~~~~~~~~~v~~~~   34 (165)
T cd01120           2 ILVFGP-TGSGKTTLALQLALNIATKGGKVVYVD   34 (165)
T ss_pred             eeEeCC-CCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence            566676 999999999999999999999999987

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []

Probab=96.97  E-value=0.0093  Score=50.58  Aligned_cols=36  Identities=25%  Similarity=0.238  Sum_probs=31.9

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      -+++-|.|. .++||||+++.....+.+.|..++++|
T Consensus        53 G~ivEi~G~-~ssGKttLaL~~ia~~q~~g~~~a~ID   88 (322)
T PF00154_consen   53 GRIVEIYGP-ESSGKTTLALHAIAEAQKQGGICAFID   88 (322)
T ss_dssp             TSEEEEEES-TTSSHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred             CceEEEeCC-CCCchhhhHHHHHHhhhcccceeEEec
Confidence            467889998 799999999999999999999999999

In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....

>PRK09183 transposase/IS protein; Provisional

Probab=96.97  E-value=0.0015  Score=53.81  Aligned_cols=35  Identities=26%  Similarity=0.271  Sum_probs=31.5

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..+++.|+ +|+|||+++..|+..+.++|++|.++.
T Consensus       103 ~~v~l~Gp-~GtGKThLa~al~~~a~~~G~~v~~~~  137 (259)
T PRK09183        103 ENIVLLGP-SGVGKTHLAIALGYEAVRAGIKVRFTT  137 (259)
T ss_pred             CeEEEEeC-CCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence            46788888 999999999999999989999999875

>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase

Probab=96.97  E-value=0.0014  Score=55.47  Aligned_cols=38  Identities=18%  Similarity=0.165  Sum_probs=34.8

Q ss_pred             CceeEEEEeCC-CCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTN-TNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~k-ggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.++|.|-|-. ||+|||.++.-|+..|.++|+++.++-
T Consensus        27 ~vPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlS   65 (311)
T TIGR00682        27 PVPVVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVGVLS   65 (311)
T ss_pred             CCCEEEEeccccCCcChHHHHHHHHHHHHHCCCEEEEEC
Confidence            46799999965 999999999999999999999999985

Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.

>PRK05541 adenylylsulfate kinase; Provisional

Probab=96.96  E-value=0.002  Score=49.77  Aligned_cols=37  Identities=32%  Similarity=0.323  Sum_probs=32.1

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +...|.++|. .|+||||++..|+..|...+..+.+++
T Consensus         6 ~~~~I~i~G~-~GsGKst~a~~l~~~l~~~~~~~~~~~   42 (176)
T PRK05541          6 NGYVIWITGL-AGSGKTTIAKALYERLKLKYSNVIYLD   42 (176)
T ss_pred             CCCEEEEEcC-CCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence            3458888888 999999999999999998888887775

>TIGR00503 prfC peptide chain release factor 3

Probab=96.95  E-value=0.022  Score=51.85  Aligned_cols=87  Identities=18%  Similarity=0.074  Sum_probs=50.0

Q ss_pred             CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhh
Q psy14904        116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANE  195 (233)
Q Consensus       116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~  195 (233)
                      ++.+.++||||...  +..  ......... .-+++|+++..+--.++....+.++..+.+ +-+++||++ .......+
T Consensus        79 ~~~inliDTPG~~d--f~~--~~~~~l~~a-D~aIlVvDa~~gv~~~t~~l~~~~~~~~~P-iivviNKiD-~~~~~~~~  151 (527)
T TIGR00503        79 DCLVNLLDTPGHED--FSE--DTYRTLTAV-DNCLMVIDAAKGVETRTRKLMEVTRLRDTP-IFTFMNKLD-RDIRDPLE  151 (527)
T ss_pred             CeEEEEEECCChhh--HHH--HHHHHHHhC-CEEEEEEECCCCCCHHHHHHHHHHHhcCCC-EEEEEECcc-ccCCCHHH
Confidence            67899999997521  110  011111222 357778877654223334445555666777 457899998 32223456


Q ss_pred             hHHHHHhhcCCCce
Q psy14904        196 NYIELTKYLNVTPL  209 (233)
Q Consensus       196 ~~~~l~~~~~~pvl  209 (233)
                      ..+.+++.++.+.+
T Consensus       152 ll~~i~~~l~~~~~  165 (527)
T TIGR00503       152 LLDEVENELKINCA  165 (527)
T ss_pred             HHHHHHHHhCCCCc
Confidence            67788877776543

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PRK03846 adenylylsulfate kinase; Provisional

Probab=96.93  E-value=0.002  Score=50.86  Aligned_cols=37  Identities=22%  Similarity=0.324  Sum_probs=32.5

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +..+|.|+|. +|+||||++..|+..|..+|..+.++|
T Consensus        23 ~~~~i~i~G~-~GsGKSTla~~l~~~l~~~~~~~~~ld   59 (198)
T PRK03846         23 KGVVLWFTGL-SGSGKSTVAGALEEALHELGVSTYLLD   59 (198)
T ss_pred             CCEEEEEECC-CCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence            4567888887 899999999999999998998888886

>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed

Probab=96.93  E-value=0.0013  Score=55.95  Aligned_cols=38  Identities=18%  Similarity=0.164  Sum_probs=33.7

Q ss_pred             CceeEEEEeC-CCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGT-NTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~-kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.++|.|-|- -||+|||+++..|+..|.++|++|.++.
T Consensus        48 ~~pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ils   86 (325)
T PRK00652         48 PVPVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVS   86 (325)
T ss_pred             CCCEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEEC
Confidence            3568999664 4999999999999999999999999986

>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []

Probab=96.92  E-value=0.017  Score=47.19  Aligned_cols=192  Identities=15%  Similarity=0.173  Sum_probs=93.9

Q ss_pred             ceeEEEEe-CCCCCcHHHHHHHHHHHHHHcCCeeeEEe--eeec-Cccc-----------CCCCCCccchHHHHHHHHhC
Q psy14904          6 FLHYFITG-TNTNIGKTIISCALLSEFKKRGISCIGMK--PIAS-GAYL-----------NNKNKIWFNEDVNLLNKYSN   70 (233)
Q Consensus         6 ~~~i~i~~-~kggvGKTt~a~~La~~l~~~G~~Vl~~d--p~~~-~~~~-----------~~~~~~l~~~d~~~~~~~~~   70 (233)
                      +|.|+||| -=+|.||=.+++.|+..|..+|++|..+|  |-.. ++..           .+ ..+-.+-|...+.+..+
T Consensus         1 tKyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~DPYlNvD~GtmsP~qHGEVfVt~-DG~EtDLDlG~YERFl~   79 (276)
T PF06418_consen    1 TKYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKIDPYLNVDPGTMSPYQHGEVFVTD-DGGETDLDLGHYERFLD   79 (276)
T ss_dssp             -EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE-SSSSSCCCS-CCTCS-EEE-T-TS-EEETHHHHHHHHHT
T ss_pred             CcEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeeccccccCCCCCCCcCccceeEec-CccccccccchHHHHhc
Confidence            57888888 45899999999999999999999999976  4211 1100           00 01122335555666665


Q ss_pred             CCcccccceeee-eecCCCChhhhhhhcCCCC---------CHHHHHHHHHHhhc--CCCeEEEeccCcccCccCCCCch
Q psy14904         71 SLYEFTKLINPY-LFKYPISPYTSSNLENRII---------NTSHIINCYNYLSN--LTDVIILEGIGGFSVPFHDNENS  138 (233)
Q Consensus        71 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~l~~--~~D~vlID~~~g~~~p~~~~~~~  138 (233)
                      ...+...++... .+.    .-+..++.|..+         -.+.+.+.+.+.++  +.|++|||-.|...+ + +....
T Consensus        80 ~~l~~~~niTtGkiy~----~vi~kER~G~ylG~TVQviPHitdeIk~~I~~~a~~~~~Dv~iiEiGGTVGD-I-Es~pF  153 (276)
T PF06418_consen   80 INLTKDNNITTGKIYQ----SVIEKERRGDYLGKTVQVIPHITDEIKERIRRVAKKPEPDVVIIEIGGTVGD-I-ESLPF  153 (276)
T ss_dssp             S---GGGEEEHHHHHH----HHHHHHHTTTTTTS---CCCHHHHHHHHHHHHHHCCCT-SEEEEEEESETTS-C-CCHHH
T ss_pred             CCCcccccccHHHHHH----HHHHHHhcCcccCceeeecchHHHHHHHHHHHhcCCCCCCEEEEecCCcccc-c-ccccH
Confidence            433221122110 010    001123333221         13567777777765  599999998766543 1 11112


Q ss_pred             H----HHHHHhC-CCEEEEEcC--------CCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcC
Q psy14904        139 A----DLAEKLG-LPIILVIDL--------KIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLN  205 (233)
Q Consensus       139 ~----~l~~~~~-~~vllV~~~--------~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~  205 (233)
                      .    ++....+ ..++++.-.        +.--.+=+..+++.|+..|+. -=+++=|.+   ....++..+++....+
T Consensus       154 lEAirQl~~~~G~~n~~~IHvtlVP~l~~~gE~KTKPtQhSVk~Lr~~GI~-PDilvcRs~---~~l~~~~k~KIalFc~  229 (276)
T PF06418_consen  154 LEAIRQLRNEVGRENVCFIHVTLVPYLKAAGEQKTKPTQHSVKELRSIGIQ-PDILVCRSE---RPLDEEIKEKIALFCN  229 (276)
T ss_dssp             HHHHHHHHHHH-TTCEEEEEEEE--EETTTTEE-HHHHHHHHHHHHHTT----SEEEEEES---S---HHHHHHHHHHCT
T ss_pred             HHHHHHHHHHhCcCcEEEEEEeeeeeeCCCCccCCccHHHHHHHHHhCCCC-CCEEEEcCC---CCCCHHHHHHHHccCC
Confidence            2    2222221 123333211        111122355577778888876 445566655   2344567778887767


Q ss_pred             CCc
Q psy14904        206 VTP  208 (233)
Q Consensus       206 ~pv  208 (233)
                      +|.
T Consensus       230 V~~  232 (276)
T PF06418_consen  230 VPP  232 (276)
T ss_dssp             S-G
T ss_pred             CCH
Confidence            653

The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.

>PRK12377 putative replication protein; Provisional

Probab=96.90  E-value=0.0018  Score=53.03  Aligned_cols=35  Identities=20%  Similarity=0.380  Sum_probs=31.8

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..+++.|+ +|+|||+++..++..+.++|++|.++.
T Consensus       102 ~~l~l~G~-~GtGKThLa~AIa~~l~~~g~~v~~i~  136 (248)
T PRK12377        102 TNFVFSGK-PGTGKNHLAAAIGNRLLAKGRSVIVVT  136 (248)
T ss_pred             CeEEEECC-CCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence            46888887 999999999999999999999998875

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=96.89  E-value=0.0016  Score=53.33  Aligned_cols=33  Identities=24%  Similarity=0.423  Sum_probs=29.9

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      |.++|. +|+||||++..|+..|...|++|.+++
T Consensus         2 Ivl~G~-pGSGKST~a~~La~~l~~~~~~v~~i~   34 (249)
T TIGR03574         2 IILTGL-PGVGKSTFSKELAKKLSEKNIDVIILG   34 (249)
T ss_pred             EEEEcC-CCCCHHHHHHHHHHHHHHcCCceEEEc
Confidence            677888 999999999999999999999988875

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1

Probab=96.88  E-value=0.01  Score=50.29  Aligned_cols=35  Identities=17%  Similarity=0.009  Sum_probs=27.2

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHH------cCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKK------RGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~------~G~~Vl~~d   42 (233)
                      .++-|+|. +|+|||++|..++..-+.      .|.+|+|+|
T Consensus        97 ~iteI~G~-~GsGKTql~lqla~~~~~~~~~gg~~~~vvYId  137 (313)
T TIGR02238        97 SITEVFGE-FRCGKTQLSHTLCVTAQLPREMGGGNGKVAYID  137 (313)
T ss_pred             eEEEEECC-CCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEE
Confidence            45667776 999999999999875432      356999998

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.

>PRK08118 topology modulation protein; Reviewed

Probab=96.87  E-value=0.0011  Score=50.94  Aligned_cols=33  Identities=15%  Similarity=0.283  Sum_probs=25.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      |+.|+|.|+ +|+||||+|..|+..+   |..+.-+|
T Consensus         1 m~rI~I~G~-~GsGKSTlak~L~~~l---~~~~~~lD   33 (167)
T PRK08118          1 MKKIILIGS-GGSGKSTLARQLGEKL---NIPVHHLD   33 (167)
T ss_pred             CcEEEEECC-CCCCHHHHHHHHHHHh---CCCceecc
Confidence            456999998 9999999999998776   55544433

>PLN03187 meiotic recombination protein DMC1 homolog; Provisional

Probab=96.87  E-value=0.015  Score=49.98  Aligned_cols=35  Identities=14%  Similarity=-0.038  Sum_probs=27.0

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHH----c--CCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKK----R--GISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~----~--G~~Vl~~d   42 (233)
                      .+.-|+|. +|+|||++|..|+..-+.    .  +-+|+|+|
T Consensus       127 ~ItEI~G~-~GsGKTql~lqlav~~qlp~~~gg~~~~vvyId  167 (344)
T PLN03187        127 CITEAFGE-FRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYID  167 (344)
T ss_pred             eEEEEecC-CCCChhHHHHHHHHHHhcchhhCCCCceEEEEE
Confidence            45567777 999999999999876542    1  35999998

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=96.85  E-value=0.0011  Score=47.93  Aligned_cols=35  Identities=29%  Similarity=0.314  Sum_probs=30.9

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..++|.|. +|+||||++..|+..+...++.+.+++
T Consensus         3 ~~~~l~G~-~G~GKTtl~~~l~~~~~~~~~~~~~~~   37 (148)
T smart00382        3 EVILIVGP-PGSGKTTLARALARELGPPGGGVIYID   37 (148)
T ss_pred             CEEEEECC-CCCcHHHHHHHHHhccCCCCCCEEEEC
Confidence            56888888 999999999999999988877788876

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=96.85  E-value=0.0022  Score=50.20  Aligned_cols=36  Identities=19%  Similarity=0.229  Sum_probs=32.3

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.|+|.|. .|+||||.+..|+..|...|++|...-
T Consensus         3 g~~IvieG~-~GsGKsT~~~~L~~~l~~~g~~v~~~~   38 (195)
T TIGR00041         3 GMFIVIEGI-DGAGKTTQANLLKKLLQENGYDVLFTR   38 (195)
T ss_pred             ceEEEEECC-CCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence            467999999 999999999999999999999997653

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>PRK08939 primosomal protein DnaI; Reviewed

Probab=96.85  E-value=0.0021  Score=54.35  Aligned_cols=36  Identities=22%  Similarity=0.452  Sum_probs=33.2

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.+++.|. .|+|||.++..+|..+.++|++|.++.
T Consensus       156 ~~gl~L~G~-~G~GKThLa~Aia~~l~~~g~~v~~~~  191 (306)
T PRK08939        156 VKGLYLYGD-FGVGKSYLLAAIANELAKKGVSSTLLH  191 (306)
T ss_pred             CCeEEEECC-CCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            467999998 999999999999999999999999886

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=96.84  E-value=0.0024  Score=49.91  Aligned_cols=34  Identities=21%  Similarity=0.316  Sum_probs=30.9

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .|+|.|. .|+||||++..|+..|..+|++|..+.
T Consensus         2 ~I~ieG~-~GsGKtT~~~~L~~~l~~~g~~v~~~~   35 (200)
T cd01672           2 FIVFEGI-DGAGKTTLIELLAERLEARGYEVVLTR   35 (200)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence            5888888 999999999999999999999997765

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PRK08181 transposase; Validated

Probab=96.81  E-value=0.0023  Score=53.07  Aligned_cols=36  Identities=14%  Similarity=0.169  Sum_probs=32.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.+++.|+ +|+|||.++.+++..+.++|++|.++.
T Consensus       106 ~~nlll~Gp-~GtGKTHLa~Aia~~a~~~g~~v~f~~  141 (269)
T PRK08181        106 GANLLLFGP-PGGGKSHLAAAIGLALIENGWRVLFTR  141 (269)
T ss_pred             CceEEEEec-CCCcHHHHHHHHHHHHHHcCCceeeee
Confidence            346888888 999999999999999999999998876

>TIGR00235 udk uridine kinase

Probab=96.81  E-value=0.0019  Score=51.36  Aligned_cols=32  Identities=22%  Similarity=0.227  Sum_probs=28.6

Q ss_pred             CCCCCceeEEEEeCCCCCcHHHHHHHHHHHHHH
Q psy14904          1 MINKNFLHYFITGTNTNIGKTIISCALLSEFKK   33 (233)
Q Consensus         1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~   33 (233)
                      |+.++..+|+|+|. +|+||||++..|+..+..
T Consensus         1 ~~~~~g~vi~I~G~-sGsGKSTl~~~l~~~l~~   32 (207)
T TIGR00235         1 MDKPKGIIIGIGGG-SGSGKTTVARKIYEQLGK   32 (207)
T ss_pred             CCCCCeEEEEEECC-CCCCHHHHHHHHHHHhcc
Confidence            77888889999998 999999999999988864

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=96.81  E-value=0.014  Score=44.97  Aligned_cols=30  Identities=23%  Similarity=0.270  Sum_probs=25.4

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ++|+|. .|+|||+.|..++..   .|.++.++.
T Consensus         2 ~li~G~-~~sGKS~~a~~~~~~---~~~~~~y~a   31 (169)
T cd00544           2 ILVTGG-ARSGKSRFAERLAAE---LGGPVTYIA   31 (169)
T ss_pred             EEEECC-CCCCHHHHHHHHHHh---cCCCeEEEE
Confidence            577777 999999999999865   678999986

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>PRK04040 adenylate kinase; Provisional

Probab=96.79  E-value=0.0021  Score=50.39  Aligned_cols=33  Identities=21%  Similarity=0.324  Sum_probs=27.1

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeee
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCI   39 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl   39 (233)
                      ++++|+|+|. +|+||||++..|+..|. .+++++
T Consensus         1 ~~~~i~v~G~-pG~GKtt~~~~l~~~l~-~~~~~~   33 (188)
T PRK04040          1 MMKVVVVTGV-PGVGKTTVLNKALEKLK-EDYKIV   33 (188)
T ss_pred             CCeEEEEEeC-CCCCHHHHHHHHHHHhc-cCCeEE
Confidence            3678999999 99999999999999885 355553

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=96.79  E-value=0.0026  Score=51.60  Aligned_cols=35  Identities=17%  Similarity=0.268  Sum_probs=30.7

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHc-CCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKR-GISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~-G~~Vl~~d   42 (233)
                      ..+.|++. +|+|||+++.+++..++.+ |.+|+++.
T Consensus        14 ~l~lI~G~-~G~GKT~~~~~~~~~~~~~~g~~vly~s   49 (242)
T cd00984          14 DLIIIAAR-PSMGKTAFALNIAENIAKKQGKPVLFFS   49 (242)
T ss_pred             eEEEEEeC-CCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence            45666666 9999999999999999988 99999986

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=96.79  E-value=0.0022  Score=53.14  Aligned_cols=36  Identities=17%  Similarity=0.203  Sum_probs=28.1

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      |+-|.++|. +|+||||+|..|...|...+++|.+++
T Consensus         1 MpLiil~G~-P~SGKTt~a~~L~~~~~~~~~~v~~i~   36 (270)
T PF08433_consen    1 MPLIILCGL-PCSGKTTRAKELKKYLEEKGKEVVIIS   36 (270)
T ss_dssp             E-EEEEE---TTSSHHHHHHHHHHHHHHTT--EEEE-
T ss_pred             CEEEEEEcC-CCCcHHHHHHHHHHHHHhcCCEEEEEc
Confidence            567888888 999999999999999999999999986

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>PRK06835 DNA replication protein DnaC; Validated

Probab=96.77  E-value=0.0026  Score=54.26  Aligned_cols=36  Identities=31%  Similarity=0.356  Sum_probs=32.9

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.+++.|+ +|+|||+++..+|..+.++|++|.++.
T Consensus       183 ~~~Lll~G~-~GtGKThLa~aIa~~l~~~g~~V~y~t  218 (329)
T PRK06835        183 NENLLFYGN-TGTGKTFLSNCIAKELLDRGKSVIYRT  218 (329)
T ss_pred             CCcEEEECC-CCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence            367889997 999999999999999999999999986

>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []

Probab=96.73  E-value=0.0021  Score=54.74  Aligned_cols=38  Identities=18%  Similarity=0.067  Sum_probs=34.7

Q ss_pred             CceeEEEEe-CCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITG-TNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~-~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.++|.|-| +-||+|||-++.-|+..|.++|++|+++-
T Consensus        34 ~vpVIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlS   72 (326)
T PF02606_consen   34 PVPVISVGNLTVGGTGKTPLVIWLARLLQARGYRPAILS   72 (326)
T ss_pred             CCcEEEEcccccCCCCchHHHHHHHHHHHhcCCceEEEc
Confidence            567999998 66899999999999999999999999974

This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process

>KOG0635|consensus

Probab=96.72  E-value=0.0034  Score=46.98  Aligned_cols=38  Identities=26%  Similarity=0.397  Sum_probs=33.5

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ++.-+|-|||- .|+||||+|+.|.++|-++|+-.-..|
T Consensus        29 qkGcviWiTGL-SgSGKStlACaL~q~L~qrgkl~Y~LD   66 (207)
T KOG0635|consen   29 QKGCVIWITGL-SGSGKSTLACALSQALLQRGKLTYILD   66 (207)
T ss_pred             CCCcEEEEecc-CCCCchhHHHHHHHHHHhcCceEEEec
Confidence            34568999999 999999999999999999998777766

>PF12846 AAA_10: AAA-like domain

Probab=96.69  E-value=0.0027  Score=52.86  Aligned_cols=36  Identities=33%  Similarity=0.493  Sum_probs=32.9

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeee
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPI   44 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~   44 (233)
                      .++|+|. +|+||||+..+++..+.++|.+++++||.
T Consensus         3 h~~i~G~-tGsGKT~~~~~l~~~~~~~g~~~~i~D~~   38 (304)
T PF12846_consen    3 HTLILGK-TGSGKTTLLKNLLEQLIRRGPRVVIFDPK   38 (304)
T ss_pred             eEEEECC-CCCcHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence            4677887 99999999999999999999999999975

>PLN03127 Elongation factor Tu; Provisional

Probab=96.69  E-value=0.049  Score=48.57  Aligned_cols=66  Identities=12%  Similarity=-0.033  Sum_probs=41.0

Q ss_pred             CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904        116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ  186 (233)
Q Consensus       116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~  186 (233)
                      ++.+++|||||.-     .............+-+++|+++..+-..+....+..++..+++.+=+++||++
T Consensus       123 ~~~i~~iDtPGh~-----~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiD  188 (447)
T PLN03127        123 KRHYAHVDCPGHA-----DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVD  188 (447)
T ss_pred             CeEEEEEECCCcc-----chHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeec
Confidence            5578999999752     11111111111223567788876654455666777777888886557899998

>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional

Probab=96.69  E-value=0.0028  Score=54.23  Aligned_cols=38  Identities=18%  Similarity=0.142  Sum_probs=34.4

Q ss_pred             CceeEEEEe-CCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITG-TNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~-~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.++|.|-| +=||+|||.++..|+..|.++|++|.++-
T Consensus        55 pvPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlS   93 (338)
T PRK01906         55 GVPVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVVS   93 (338)
T ss_pred             CCCEEEECCccCCCCChHHHHHHHHHHHHHcCCceEEEe
Confidence            457898888 67999999999999999999999999975

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=96.68  E-value=0.0032  Score=48.47  Aligned_cols=32  Identities=38%  Similarity=0.680  Sum_probs=28.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904          9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGM   41 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~   41 (233)
                      |+|||. +|+||||+...+...+...|.+|.-|
T Consensus         2 i~iTG~-pG~GKTTll~k~i~~l~~~~~~v~Gf   33 (168)
T PF03266_consen    2 IFITGP-PGVGKTTLLKKVIEELKKKGLPVGGF   33 (168)
T ss_dssp             EEEES--TTSSHHHHHHHHHHHHHHTCGGEEEE
T ss_pred             EEEECc-CCCCHHHHHHHHHHHhhccCCccceE
Confidence            789998 99999999999999999999888654

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=96.68  E-value=0.0039  Score=50.48  Aligned_cols=36  Identities=28%  Similarity=0.288  Sum_probs=32.1

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ...+.|+|. +|+||||++..++..+.++|.+++++.
T Consensus        24 g~~~~i~G~-~G~GKTtl~~~~~~~~~~~g~~~~yi~   59 (230)
T PRK08533         24 GSLILIEGD-ESTGKSILSQRLAYGFLQNGYSVSYVS   59 (230)
T ss_pred             CcEEEEECC-CCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence            347788888 999999999999999999999999987

>cd03112 CobW_like The function of this protein family is unkown

Probab=96.68  E-value=0.027  Score=42.78  Aligned_cols=32  Identities=25%  Similarity=0.280  Sum_probs=26.5

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ++.++|. .|+||||+...+....  .|+++.++.
T Consensus         2 ~~~l~G~-~GsGKTtl~~~l~~~~--~~~~~~~i~   33 (158)
T cd03112           2 VTVLTGF-LGAGKTTLLNHILTEQ--HGRKIAVIE   33 (158)
T ss_pred             EEEEEEC-CCCCHHHHHHHHHhcc--cCCcEEEEe
Confidence            5778888 9999999999988764  588888875

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=96.67  E-value=0.0042  Score=48.30  Aligned_cols=37  Identities=22%  Similarity=0.347  Sum_probs=31.9

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +..+|.++|. +|+||||++..|+..+...|..+.+++
T Consensus        17 ~~~~i~i~G~-~GsGKstla~~l~~~l~~~~~~~~~l~   53 (184)
T TIGR00455        17 RGVVIWLTGL-SGSGKSTIANALEKKLESKGYRVYVLD   53 (184)
T ss_pred             CCeEEEEECC-CCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence            4567888887 899999999999999998898887776

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PRK06762 hypothetical protein; Provisional

Probab=96.67  E-value=0.0034  Score=47.92  Aligned_cols=33  Identities=24%  Similarity=0.293  Sum_probs=25.3

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.|.|+|. +|+||||+|..|+..+   |..+.+++
T Consensus         2 ~~li~i~G~-~GsGKST~A~~L~~~l---~~~~~~i~   34 (166)
T PRK06762          2 TTLIIIRGN-SGSGKTTIAKQLQERL---GRGTLLVS   34 (166)
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHHHh---CCCeEEec
Confidence            456777766 9999999999999888   44565554

>PRK10218 GTP-binding protein; Provisional

Probab=96.67  E-value=0.044  Score=50.66  Aligned_cols=66  Identities=21%  Similarity=0.220  Sum_probs=41.4

Q ss_pred             cCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904        115 NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ  186 (233)
Q Consensus       115 ~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~  186 (233)
                      +++.+.++||||.-.  +..  ..-...... .-+++|.++..+...++....+.+...+++.+ +++||++
T Consensus        66 ~~~~inliDTPG~~d--f~~--~v~~~l~~a-Dg~ILVVDa~~G~~~qt~~~l~~a~~~gip~I-VviNKiD  131 (607)
T PRK10218         66 NDYRINIVDTPGHAD--FGG--EVERVMSMV-DSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPI-VVINKVD  131 (607)
T ss_pred             CCEEEEEEECCCcch--hHH--HHHHHHHhC-CEEEEEEecccCccHHHHHHHHHHHHcCCCEE-EEEECcC
Confidence            367899999986531  110  112222333 35788888776544455555666667888865 7899998

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=96.66  E-value=0.036  Score=51.13  Aligned_cols=65  Identities=22%  Similarity=0.243  Sum_probs=42.2

Q ss_pred             CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904        116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ  186 (233)
Q Consensus       116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~  186 (233)
                      ++.+-||||||.-.  +..  ......... .-+++|+++..+...++...++.+.+.+++++ +|+||++
T Consensus        63 ~~kinlIDTPGh~D--F~~--ev~~~l~~a-D~alLVVDa~~G~~~qT~~~l~~a~~~~ip~I-VviNKiD  127 (594)
T TIGR01394        63 GTKINIVDTPGHAD--FGG--EVERVLGMV-DGVLLLVDASEGPMPQTRFVLKKALELGLKPI-VVINKID  127 (594)
T ss_pred             CEEEEEEECCCHHH--HHH--HHHHHHHhC-CEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEE-EEEECCC
Confidence            57899999987531  100  111122233 35777888776655666667777778888864 8899998

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]

Probab=96.65  E-value=0.025  Score=46.99  Aligned_cols=36  Identities=22%  Similarity=0.144  Sum_probs=32.3

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..++=|.|. .|+||||+|.+++..-.+.|.++.++|
T Consensus        60 g~ItEiyG~-~gsGKT~lal~~~~~aq~~g~~a~fID   95 (279)
T COG0468          60 GRITEIYGP-ESSGKTTLALQLVANAQKPGGKAAFID   95 (279)
T ss_pred             ceEEEEecC-CCcchhhHHHHHHHHhhcCCCeEEEEe
Confidence            346678888 999999999999999999999999998

>PRK08727 hypothetical protein; Validated

Probab=96.64  E-value=0.0035  Score=50.86  Aligned_cols=35  Identities=23%  Similarity=0.324  Sum_probs=31.9

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..+++.|. +|+|||.++..++..+.++|++|.++.
T Consensus        42 ~~l~l~G~-~G~GKThL~~a~~~~~~~~~~~~~y~~   76 (233)
T PRK08727         42 DWLYLSGP-AGTGKTHLALALCAAAEQAGRSSAYLP   76 (233)
T ss_pred             CeEEEECC-CCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence            45888888 999999999999999999999999986

>PRK06893 DNA replication initiation factor; Validated

Probab=96.64  E-value=0.0035  Score=50.68  Aligned_cols=35  Identities=17%  Similarity=0.241  Sum_probs=31.7

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.+++.|+ +|+|||+++..++..+.++|.++.++.
T Consensus        40 ~~l~l~G~-~G~GKThL~~ai~~~~~~~~~~~~y~~   74 (229)
T PRK06893         40 PFFYIWGG-KSSGKSHLLKAVSNHYLLNQRTAIYIP   74 (229)
T ss_pred             CeEEEECC-CCCCHHHHHHHHHHHHHHcCCCeEEee
Confidence            45788888 999999999999999999999999887

>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]

Probab=96.62  E-value=0.016  Score=45.04  Aligned_cols=38  Identities=18%  Similarity=0.061  Sum_probs=32.6

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..+-+.+..+..|-||||-+.++|....-+|+||+++.
T Consensus        26 ~~~Gli~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQ   63 (198)
T COG2109          26 EEKGLIIVFTGNGKGKTTAALGLALRALGHGLRVGVVQ   63 (198)
T ss_pred             cccCeEEEEecCCCChhHHHHHHHHHHhcCCCEEEEEE
Confidence            34556777777899999999999999999999999975

>PHA02542 41 41 helicase; Provisional

Probab=96.61  E-value=0.0031  Score=56.41  Aligned_cols=35  Identities=17%  Similarity=0.409  Sum_probs=30.4

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.|.+..+|+||||+++|+|...++.|++|++|.
T Consensus       191 ~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fS  225 (473)
T PHA02542        191 TLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYIS  225 (473)
T ss_pred             cEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEe
Confidence            35555566999999999999999999999999986

>PRK13351 elongation factor G; Reviewed

Probab=96.61  E-value=0.05  Score=51.19  Aligned_cols=94  Identities=12%  Similarity=0.105  Sum_probs=55.4

Q ss_pred             CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhh
Q psy14904        116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANE  195 (233)
Q Consensus       116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~  195 (233)
                      ++.+.++||||...  +..  ......... .-+++|.+...+.-.+.....+.++..+.+++ +|+||.+ ........
T Consensus        72 ~~~i~liDtPG~~d--f~~--~~~~~l~~a-D~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-iviNK~D-~~~~~~~~  144 (687)
T PRK13351         72 NHRINLIDTPGHID--FTG--EVERSLRVL-DGAVVVFDAVTGVQPQTETVWRQADRYGIPRL-IFINKMD-RVGADLFK  144 (687)
T ss_pred             CEEEEEEECCCcHH--HHH--HHHHHHHhC-CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEE-EEEECCC-CCCCCHHH
Confidence            57899999987531  100  111222223 35677777765432334445556667788866 7899998 33333456


Q ss_pred             hHHHHHhhcCCCceE-ecCCCC
Q psy14904        196 NYIELTKYLNVTPLG-RIPYLY  216 (233)
Q Consensus       196 ~~~~l~~~~~~pvlg-~IP~~~  216 (233)
                      .++.+++.++.+... .+|...
T Consensus       145 ~~~~i~~~l~~~~~~~~~P~~~  166 (687)
T PRK13351        145 VLEDIEERFGKRPLPLQLPIGS  166 (687)
T ss_pred             HHHHHHHHHCCCeEEEEecccc
Confidence            778888887765543 355443

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=96.61  E-value=0.0038  Score=51.59  Aligned_cols=34  Identities=18%  Similarity=0.246  Sum_probs=29.4

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHc-CCeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKR-GISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~-G~~Vl~~d   42 (233)
                      .+.|++. +|+||||++.+++..++++ |.+|+++.
T Consensus        32 ~~~i~g~-~G~GKT~l~~~~~~~~~~~~g~~vl~iS   66 (271)
T cd01122          32 LIILTAG-TGVGKTTFLREYALDLITQHGVRVGTIS   66 (271)
T ss_pred             EEEEEcC-CCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence            4555555 9999999999999999887 99999986

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>PRK14527 adenylate kinase; Provisional

Probab=96.61  E-value=0.0027  Score=49.79  Aligned_cols=30  Identities=20%  Similarity=0.184  Sum_probs=27.2

Q ss_pred             CCCCCceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          1 MINKNFLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      |+.++.++|.|.|. +|+||||++..|+..+
T Consensus         1 ~~~~~~~~i~i~G~-pGsGKsT~a~~La~~~   30 (191)
T PRK14527          1 MTQTKNKVVIFLGP-PGAGKGTQAERLAQEL   30 (191)
T ss_pred             CCCCCCcEEEEECC-CCCCHHHHHHHHHHHh
Confidence            77888889999999 9999999999998877

>PRK05433 GTP-binding protein LepA; Provisional

Probab=96.58  E-value=0.057  Score=49.97  Aligned_cols=27  Identities=22%  Similarity=0.311  Sum_probs=22.6

Q ss_pred             CCCceeEEEEeCCCCCcHHHHHHHHHHH
Q psy14904          3 NKNFLHYFITGTNTNIGKTIISCALLSE   30 (233)
Q Consensus         3 ~~~~~~i~i~~~kggvGKTt~a~~La~~   30 (233)
                      .++++.|+|.+. .++||||++-.|...
T Consensus         4 ~~~iRNi~IiGh-vd~GKTTL~~rLl~~   30 (600)
T PRK05433          4 MKNIRNFSIIAH-IDHGKSTLADRLIEL   30 (600)
T ss_pred             cccCCEEEEECC-CCCCHHHHHHHHHHh
Confidence            346789999998 999999999888753

>PTZ00035 Rad51 protein; Provisional

Probab=96.57  E-value=0.024  Score=48.56  Aligned_cols=36  Identities=14%  Similarity=-0.021  Sum_probs=28.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHH------cCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKK------RGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~------~G~~Vl~~d   42 (233)
                      ..++.|+|. +|+|||+++..|+.....      .+.+|+++|
T Consensus       118 G~iteI~G~-~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyId  159 (337)
T PTZ00035        118 GSITELFGE-FRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYID  159 (337)
T ss_pred             CeEEEEECC-CCCchhHHHHHHHHHhccccccCCCCceEEEEE
Confidence            346777776 999999999999877642      456999998

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=96.57  E-value=0.0043  Score=45.26  Aligned_cols=36  Identities=19%  Similarity=0.325  Sum_probs=32.1

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.+.|+|. +|+|||+++..++..+.+.+.++.+++
T Consensus        19 ~~~v~i~G~-~G~GKT~l~~~i~~~~~~~~~~v~~~~   54 (151)
T cd00009          19 PKNLLLYGP-PGTGKTTLARAIANELFRPGAPFLYLN   54 (151)
T ss_pred             CCeEEEECC-CCCCHHHHHHHHHHHhhcCCCCeEEEe
Confidence            457888888 999999999999999988888998887

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK06921 hypothetical protein; Provisional

Probab=96.56  E-value=0.0048  Score=51.10  Aligned_cols=36  Identities=19%  Similarity=0.261  Sum_probs=32.4

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHc-CCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKR-GISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~-G~~Vl~~d   42 (233)
                      ...+++.|. +|+|||+++..+|..+.++ |++|+++.
T Consensus       117 ~~~l~l~G~-~G~GKThLa~aia~~l~~~~g~~v~y~~  153 (266)
T PRK06921        117 KNSIALLGQ-PGSGKTHLLTAAANELMRKKGVPVLYFP  153 (266)
T ss_pred             CCeEEEECC-CCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence            457888887 9999999999999999988 99999886

>PRK06851 hypothetical protein; Provisional

Probab=96.56  E-value=0.0052  Score=53.03  Aligned_cols=35  Identities=20%  Similarity=0.368  Sum_probs=31.2

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.++|+|. +|+||||+...++..+.++|++|.++-
T Consensus       215 ~~~~i~G~-pG~GKstl~~~i~~~a~~~G~~v~~~h  249 (367)
T PRK06851        215 NRYFLKGR-PGTGKSTMLKKIAKAAEERGFDVEVYH  249 (367)
T ss_pred             eEEEEeCC-CCCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence            45666666 999999999999999999999999985

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=96.55  E-value=0.0037  Score=50.30  Aligned_cols=33  Identities=15%  Similarity=0.143  Sum_probs=27.5

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHH--cCCeeeEE
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKK--RGISCIGM   41 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~--~G~~Vl~~   41 (233)
                      +|.|+|. +|+||||++..|+..|..  .+.+|.++
T Consensus         1 IigI~G~-sGSGKTTla~~L~~~l~~~~~~~~v~vi   35 (220)
T cd02025           1 IIGIAGS-VAVGKSTTARVLQALLSRWPDHPNVELI   35 (220)
T ss_pred             CEEeeCC-CCCCHHHHHHHHHHHHhhcCCCCcEEEE
Confidence            4788888 999999999999999976  45677664

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=96.55  E-value=0.0048  Score=49.95  Aligned_cols=35  Identities=20%  Similarity=0.275  Sum_probs=31.1

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .++.|++. +|+|||+++.+++....++|.+|+++.
T Consensus        26 ~~~~i~G~-~GsGKt~l~~~~~~~~~~~g~~~~y~~   60 (234)
T PRK06067         26 SLILIEGD-HGTGKSVLSQQFVYGALKQGKKVYVIT   60 (234)
T ss_pred             cEEEEECC-CCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence            46777776 999999999999988888999999997

>PRK04301 radA DNA repair and recombination protein RadA; Validated

Probab=96.55  E-value=0.023  Score=48.25  Aligned_cols=35  Identities=17%  Similarity=0.037  Sum_probs=28.2

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHc------CCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKR------GISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~------G~~Vl~~d   42 (233)
                      .++-|+|. +|+|||++|..++...+..      +.+|+|+|
T Consensus       103 ~vtei~G~-~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~  143 (317)
T PRK04301        103 SITEFYGE-FGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID  143 (317)
T ss_pred             cEEEEECC-CCCCHhHHHHHHHHHhccccccCCCCceEEEEe
Confidence            45667776 9999999999999877643      34899998

>PLN02924 thymidylate kinase

Probab=96.54  E-value=0.0051  Score=49.49  Aligned_cols=37  Identities=19%  Similarity=0.171  Sum_probs=33.0

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.+.|+|-|. -|+||||.+..|+..|..+|++|.+..
T Consensus        15 ~g~~IviEGi-DGsGKsTq~~~L~~~l~~~g~~v~~~~   51 (220)
T PLN02924         15 RGALIVLEGL-DRSGKSTQCAKLVSFLKGLGVAAELWR   51 (220)
T ss_pred             CCeEEEEECC-CCCCHHHHHHHHHHHHHhcCCCceeee
Confidence            4568999998 999999999999999999999987664

>KOG3347|consensus

Probab=96.52  E-value=0.0022  Score=47.90  Aligned_cols=24  Identities=25%  Similarity=0.387  Sum_probs=21.4

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      +.|.|||+ +|+||||++-.||..+
T Consensus         8 PNILvtGT-PG~GKstl~~~lae~~   31 (176)
T KOG3347|consen    8 PNILVTGT-PGTGKSTLAERLAEKT   31 (176)
T ss_pred             CCEEEeCC-CCCCchhHHHHHHHHh
Confidence            46999999 9999999999999655

>PRK07933 thymidylate kinase; Validated

Probab=96.52  E-value=0.0054  Score=49.09  Aligned_cols=34  Identities=26%  Similarity=0.346  Sum_probs=31.4

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .|+|-|. -|+||||.+..|+..|..+|++|.+.+
T Consensus         2 ~IviEG~-dGsGKST~~~~L~~~L~~~g~~v~~~~   35 (213)
T PRK07933          2 LIAIEGV-DGAGKRTLTEALRAALEARGRSVATLA   35 (213)
T ss_pred             EEEEEcC-CCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence            5788888 899999999999999999999999876

>PRK00049 elongation factor Tu; Reviewed

Probab=96.52  E-value=0.052  Score=47.64  Aligned_cols=66  Identities=12%  Similarity=0.012  Sum_probs=39.8

Q ss_pred             CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904        116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ  186 (233)
Q Consensus       116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~  186 (233)
                      ++.+++||+||.-.  +   .....-+.....-+++|+++..+-..+....+..+...+.+.+-+++||++
T Consensus        74 ~~~i~~iDtPG~~~--f---~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D  139 (396)
T PRK00049         74 KRHYAHVDCPGHAD--Y---VKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCD  139 (396)
T ss_pred             CeEEEEEECCCHHH--H---HHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecC
Confidence            45789999997521  1   001111111123467788776654445556667777788886656899998

>PRK06217 hypothetical protein; Validated

Probab=96.52  E-value=0.0026  Score=49.56  Aligned_cols=24  Identities=29%  Similarity=0.508  Sum_probs=21.5

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      ..|+|+|. +|+||||++..|+..+
T Consensus         2 ~~I~i~G~-~GsGKSTla~~L~~~l   25 (183)
T PRK06217          2 MRIHITGA-SGSGTTTLGAALAERL   25 (183)
T ss_pred             eEEEEECC-CCCCHHHHHHHHHHHc
Confidence            45899998 9999999999999877

>PRK05439 pantothenate kinase; Provisional

Probab=96.51  E-value=0.0054  Score=51.83  Aligned_cols=36  Identities=14%  Similarity=0.076  Sum_probs=29.9

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHc--CCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKR--GISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~--G~~Vl~~d   42 (233)
                      .-+|.|+|. +|+||||+|..|+..|.+.  |.+|.++-
T Consensus        86 ~~iIgIaG~-~gsGKSTla~~L~~~l~~~~~~~~v~vi~  123 (311)
T PRK05439         86 PFIIGIAGS-VAVGKSTTARLLQALLSRWPEHPKVELVT  123 (311)
T ss_pred             CEEEEEECC-CCCCHHHHHHHHHHHHHhhCCCCceEEEe
Confidence            347889988 9999999999999999764  67787753

>PRK00089 era GTPase Era; Reviewed

Probab=96.50  E-value=0.36  Score=40.30  Aligned_cols=29  Identities=28%  Similarity=0.272  Sum_probs=22.1

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGM   41 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~   41 (233)
                      .-.|+|.|. +|+||||+.-.|.      |.++..+
T Consensus         5 ~g~V~iiG~-pn~GKSTLin~L~------g~~~~~v   33 (292)
T PRK00089          5 SGFVAIVGR-PNVGKSTLLNALV------GQKISIV   33 (292)
T ss_pred             eEEEEEECC-CCCCHHHHHHHHh------CCceeec
Confidence            446888888 9999999987765      5566544

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=96.49  E-value=0.0048  Score=50.80  Aligned_cols=36  Identities=28%  Similarity=0.292  Sum_probs=33.1

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      -+++.|+|. +|+|||+++.+.+...+++|.+|+++-
T Consensus        23 g~~~lI~G~-pGsGKT~f~~qfl~~~~~~ge~vlyvs   58 (260)
T COG0467          23 GSVVLITGP-PGTGKTIFALQFLYEGAREGEPVLYVS   58 (260)
T ss_pred             CcEEEEEcC-CCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence            457888888 999999999999999999999999986

>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C

Probab=96.48  E-value=0.0052  Score=47.94  Aligned_cols=34  Identities=21%  Similarity=0.271  Sum_probs=26.4

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHH----------cCCeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKK----------RGISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~----------~G~~Vl~~d   42 (233)
                      ...|++. +|+||||++..++..++.          ++.+|++++
T Consensus        34 l~~i~g~-~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~   77 (193)
T PF13481_consen   34 LTLIAGP-PGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYIS   77 (193)
T ss_dssp             EEEEEEC-STSSHHHHHHHHHHHHHT---TT---------EEEEE
T ss_pred             EEEEEeC-CCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEe
Confidence            4566666 999999999999999997          678999987

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=96.47  E-value=0.0035  Score=45.26  Aligned_cols=22  Identities=32%  Similarity=0.360  Sum_probs=20.3

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          9 YFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      |+|+|. +|+||||++..|+..+
T Consensus         1 I~i~G~-~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGI-PGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHH
T ss_pred             CEEECC-CCCCHHHHHHHHHHHH
Confidence            678888 9999999999999998

...

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=96.46  E-value=0.0053  Score=49.39  Aligned_cols=35  Identities=23%  Similarity=0.262  Sum_probs=29.6

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHc-CCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKR-GISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~-G~~Vl~~d   42 (233)
                      .++.|+|. +|+|||+++..++..-+++ |.+|+++-
T Consensus        20 s~~li~G~-~GsGKT~l~~q~l~~~~~~~ge~vlyvs   55 (226)
T PF06745_consen   20 SVVLISGP-PGSGKTTLALQFLYNGLKNFGEKVLYVS   55 (226)
T ss_dssp             SEEEEEES-TTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred             cEEEEEeC-CCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence            46788888 9999999999999998888 99999985

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=96.45  E-value=0.0043  Score=49.45  Aligned_cols=38  Identities=21%  Similarity=0.298  Sum_probs=29.1

Q ss_pred             CCCCC--ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904          1 MINKN--FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGM   41 (233)
Q Consensus         1 ~~~~~--~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~   41 (233)
                      |+.++  ..+|.|+|. +|+||||+|..|...|...  ++.++
T Consensus         1 m~~~~~~~iiIgIaG~-SgSGKTTva~~l~~~~~~~--~~~~I   40 (218)
T COG0572           1 MMKKPEKVIIIGIAGG-SGSGKTTVAKELSEQLGVE--KVVVI   40 (218)
T ss_pred             CCCCCCceEEEEEeCC-CCCCHHHHHHHHHHHhCcC--cceEe
Confidence            44443  458889998 9999999999999999644  55554

>CHL00071 tufA elongation factor Tu

Probab=96.42  E-value=0.069  Score=47.08  Aligned_cols=67  Identities=12%  Similarity=-0.004  Sum_probs=41.3

Q ss_pred             cCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904        115 NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ  186 (233)
Q Consensus       115 ~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~  186 (233)
                      +++.+++||+||.-  .+   .....-+.....-+++|.++..+-..+....+..+...+++.+=+++||++
T Consensus        73 ~~~~~~~iDtPGh~--~~---~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D  139 (409)
T CHL00071         73 ENRHYAHVDCPGHA--DY---VKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKED  139 (409)
T ss_pred             CCeEEEEEECCChH--HH---HHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccC
Confidence            35578999999742  11   111111111223578888877655455666677777788875557899998

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=96.41  E-value=0.0073  Score=48.52  Aligned_cols=36  Identities=22%  Similarity=0.169  Sum_probs=31.7

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..++.|++. +|+|||+++..++....++|.+|+++.
T Consensus        16 g~~~li~G~-~G~GKt~~~~~~~~~~~~~g~~~~y~s   51 (224)
T TIGR03880        16 GHVIVVIGE-YGTGKTTFSLQFLYQGLKNGEKAMYIS   51 (224)
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence            346777776 999999999999999888999999997

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>smart00053 DYNc Dynamin, GTPase

Probab=96.41  E-value=0.097  Score=42.67  Aligned_cols=70  Identities=17%  Similarity=0.228  Sum_probs=38.7

Q ss_pred             CCCeEEEeccCcccCccCCC-C----chHHHH----HHhCCCEEEEEcCCCCcH-HHHHHHHHHHHhCCCcEEEEEEccc
Q psy14904        116 LTDVIILEGIGGFSVPFHDN-E----NSADLA----EKLGLPIILVIDLKIGCI-NNALLSLEAINSRGLKLIGWVANHT  185 (233)
Q Consensus       116 ~~D~vlID~~~g~~~p~~~~-~----~~~~l~----~~~~~~vllV~~~~~~~~-~~~~~~~~~l~~~~~~i~GiVlN~~  185 (233)
                      ..|+.|||+||-...+.... .    ..-+++    ..-+.-+++|+++..+-. .+.....+.++..+.+++|| +||.
T Consensus       124 ~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~V-iTK~  202 (240)
T smart00053      124 VLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGV-ITKL  202 (240)
T ss_pred             CCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEE-EECC
Confidence            38999999987653221110 0    111111    112234666666654322 23445566667778887755 9999


Q ss_pred             C
Q psy14904        186 Q  186 (233)
Q Consensus       186 ~  186 (233)
                      +
T Consensus       203 D  203 (240)
T smart00053      203 D  203 (240)
T ss_pred             C
Confidence            8

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>PRK08084 DNA replication initiation factor; Provisional

Probab=96.39  E-value=0.0069  Score=49.19  Aligned_cols=35  Identities=14%  Similarity=0.148  Sum_probs=32.1

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..+++.|. .|+|||+++..++..+.++|++|.++.
T Consensus        46 ~~l~l~Gp-~G~GKThLl~a~~~~~~~~~~~v~y~~   80 (235)
T PRK08084         46 GYIYLWSR-EGAGRSHLLHAACAELSQRGRAVGYVP   80 (235)
T ss_pred             CeEEEECC-CCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence            57888888 999999999999999999999999986

>PRK06761 hypothetical protein; Provisional

Probab=96.39  E-value=0.0042  Score=51.76  Aligned_cols=35  Identities=20%  Similarity=0.180  Sum_probs=30.6

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGM   41 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~   41 (233)
                      .+.|.|+|. +|+||||++..|+..|..+|.++-.+
T Consensus         3 ~~lIvI~G~-~GsGKTTla~~L~~~L~~~g~~v~~~   37 (282)
T PRK06761          3 TKLIIIEGL-PGFGKSTTAKMLNDILSQNGIEVELY   37 (282)
T ss_pred             CcEEEEECC-CCCCHHHHHHHHHHhcCcCceEEEEE
Confidence            357888888 99999999999999999889988764

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=96.37  E-value=0.0074  Score=48.59  Aligned_cols=35  Identities=23%  Similarity=0.246  Sum_probs=30.6

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..+.|++. +|+|||+++.+++....++|.+|+++.
T Consensus        21 ~~~~i~G~-~G~GKT~l~~~~~~~~~~~g~~~~~is   55 (229)
T TIGR03881        21 FFVAVTGE-PGTGKTIFCLHFAYKGLRDGDPVIYVT   55 (229)
T ss_pred             eEEEEECC-CCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence            46777776 999999999999988888999999987

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>TIGR00708 cobA cob(I)alamin adenosyltransferase

Probab=96.36  E-value=0.0082  Score=46.28  Aligned_cols=27  Identities=15%  Similarity=0.080  Sum_probs=25.5

Q ss_pred             CCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904         16 TNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus        16 ggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .|.||||.+.++|...+.+|++|+++.
T Consensus        14 ~GkGKtt~a~g~a~ra~~~g~~v~ivQ   40 (173)
T TIGR00708        14 NGKGKTTAAFGMALRALGHGKKVGVIQ   40 (173)
T ss_pred             CCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence            799999999999999999999998864

Alternate name: corrinoid adenosyltransferase.

>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork

Probab=96.36  E-value=0.0063  Score=50.09  Aligned_cols=34  Identities=12%  Similarity=0.197  Sum_probs=29.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHc-CCeeeEEe
Q psy14904          9 YFITGTNTNIGKTIISCALLSEFKKR-GISCIGMK   42 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l~~~-G~~Vl~~d   42 (233)
                      +.|.+..+|+|||+++.++|..++.+ |++|++|-
T Consensus        21 L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~S   55 (259)
T PF03796_consen   21 LTVIAARPGVGKTAFALQIALNAALNGGYPVLYFS   55 (259)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEE
T ss_pred             EEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEc
Confidence            44555559999999999999999997 69999986

Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....

>PRK05380 pyrG CTP synthetase; Validated

Probab=96.35  E-value=0.062  Score=48.47  Aligned_cols=38  Identities=29%  Similarity=0.355  Sum_probs=34.3

Q ss_pred             CceeEEEEe-CCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITG-TNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~-~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      |+|-|+||| -=+|.||=.+++.|+..|..+|++|..+|
T Consensus         1 ~~k~ifvtGgv~S~lGKGi~~as~g~ll~~~g~~v~~~K   39 (533)
T PRK05380          1 MTKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQK   39 (533)
T ss_pred             CceEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEe
Confidence            478899998 45899999999999999999999999976

>PRK05642 DNA replication initiation factor; Validated

Probab=96.34  E-value=0.0073  Score=49.04  Aligned_cols=35  Identities=17%  Similarity=0.338  Sum_probs=31.5

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..+++.|. .|+|||.++..++..+.++|++|.++.
T Consensus        46 ~~l~l~G~-~G~GKTHLl~a~~~~~~~~~~~v~y~~   80 (234)
T PRK05642         46 SLIYLWGK-DGVGRSHLLQAACLRFEQRGEPAVYLP   80 (234)
T ss_pred             CeEEEECC-CCCCHHHHHHHHHHHHHhCCCcEEEee
Confidence            46788888 999999999999999999999999987

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=96.34  E-value=0.0079  Score=48.88  Aligned_cols=36  Identities=22%  Similarity=0.168  Sum_probs=31.6

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      -..+.|+|. +|+|||+++..++...+++|.+++++-
T Consensus        21 gs~~lI~G~-pGsGKT~la~~~l~~~~~~ge~~lyvs   56 (237)
T TIGR03877        21 RNVVLLSGG-PGTGKSIFSQQFLWNGLQMGEPGIYVA   56 (237)
T ss_pred             CeEEEEEcC-CCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence            356777887 999999999999988888999999986

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>PTZ00301 uridine kinase; Provisional

Probab=96.33  E-value=0.0052  Score=49.07  Aligned_cols=28  Identities=25%  Similarity=0.331  Sum_probs=24.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHc
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKR   34 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~   34 (233)
                      ..+|.|+|. +|+||||+|..|+..|.++
T Consensus         3 ~~iIgIaG~-SgSGKTTla~~l~~~l~~~   30 (210)
T PTZ00301          3 CTVIGISGA-SGSGKSSLSTNIVSELMAH   30 (210)
T ss_pred             CEEEEEECC-CcCCHHHHHHHHHHHHHhh
Confidence            468999999 9999999999999888654

>PRK00698 tmk thymidylate kinase; Validated

Probab=96.31  E-value=0.0086  Score=47.13  Aligned_cols=36  Identities=17%  Similarity=0.160  Sum_probs=31.6

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.|+|.|. .|+||||++..|+..|...|+.+....
T Consensus         3 ~~~I~ieG~-~gsGKsT~~~~L~~~l~~~~~~~~~~~   38 (205)
T PRK00698          3 GMFITIEGI-DGAGKSTQIELLKELLEQQGRDVVFTR   38 (205)
T ss_pred             ceEEEEECC-CCCCHHHHHHHHHHHHHHcCCceeEee
Confidence            468999998 999999999999999999998777654

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=96.30  E-value=0.006  Score=48.32  Aligned_cols=33  Identities=21%  Similarity=0.264  Sum_probs=27.2

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ||.+|.+||. .|+||||++-    .|+..|+.|.-.|
T Consensus         1 ~~~iIglTG~-igsGKStva~----~~~~~G~~vidaD   33 (201)
T COG0237           1 MMLIIGLTGG-IGSGKSTVAK----ILAELGFPVIDAD   33 (201)
T ss_pred             CceEEEEecC-CCCCHHHHHH----HHHHcCCeEEEcc
Confidence            5789999999 9999999984    4455689997766

>COG4240 Predicted kinase [General function prediction only]

Probab=96.30  E-value=0.0067  Score=48.60  Aligned_cols=33  Identities=18%  Similarity=0.273  Sum_probs=29.6

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcC-CeeeEE
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRG-ISCIGM   41 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G-~~Vl~~   41 (233)
                      ++.|+|+ .|+||||+++.|-..|+++| ++++.+
T Consensus        52 i~gisGp-QGSGKStls~~i~~~L~~kg~ert~~l   85 (300)
T COG4240          52 IVGISGP-QGSGKSTLSALIVRLLAAKGLERTATL   85 (300)
T ss_pred             EEEeecC-CCCchhhHHHHHHHHHHHhcccceEEe
Confidence            6777777 99999999999999999998 788875

>cd04165 GTPBP1_like GTPBP1-like

Probab=96.29  E-value=0.085  Score=42.51  Aligned_cols=87  Identities=14%  Similarity=0.082  Sum_probs=47.5

Q ss_pred             cCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhh
Q psy14904        115 NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFAN  194 (233)
Q Consensus       115 ~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~  194 (233)
                      .++-+.+||+||.-.  .... ....+......-+++|.++..+-..+....++.+...++++ -+|+||++.-......
T Consensus        82 ~~~~i~liDtpG~~~--~~~~-~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~-ivvvNK~D~~~~~~~~  157 (224)
T cd04165          82 SSKLVTFIDLAGHER--YLKT-TLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPV-FVVVTKIDLAPANILQ  157 (224)
T ss_pred             CCcEEEEEECCCcHH--HHHH-HHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCE-EEEEECccccCHHHHH
Confidence            467899999997521  1000 00011100112367777776554455566677777888885 5889999821122233


Q ss_pred             hhHHHHHhhcC
Q psy14904        195 ENYIELTKYLN  205 (233)
Q Consensus       195 ~~~~~l~~~~~  205 (233)
                      ...+.+++.+.
T Consensus       158 ~~~~~l~~~L~  168 (224)
T cd04165         158 ETLKDLKRILK  168 (224)
T ss_pred             HHHHHHHHHhc
Confidence            44555555443

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PF13479 AAA_24: AAA domain

Probab=96.29  E-value=0.025  Score=45.18  Aligned_cols=27  Identities=22%  Similarity=0.352  Sum_probs=23.0

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      -.++|.|. +|+||||++..+        .+++++|
T Consensus         4 ~~~lIyG~-~G~GKTt~a~~~--------~k~l~id   30 (213)
T PF13479_consen    4 IKILIYGP-PGSGKTTLAASL--------PKPLFID   30 (213)
T ss_pred             eEEEEECC-CCCCHHHHHHhC--------CCeEEEE
Confidence            45788888 999999998777        7899988

>PF05729 NACHT: NACHT domain

Probab=96.27  E-value=0.0056  Score=46.11  Aligned_cols=29  Identities=17%  Similarity=0.271  Sum_probs=24.6

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCC
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGI   36 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~   36 (233)
                      +++.|+|. +|+||||++..++..+++.+.
T Consensus         1 r~l~I~G~-~G~GKStll~~~~~~~~~~~~   29 (166)
T PF05729_consen    1 RVLWISGE-PGSGKSTLLRKLAQQLAEEEP   29 (166)
T ss_pred             CEEEEECC-CCCChHHHHHHHHHHHHhcCc
Confidence            35667776 999999999999999998864

>PRK13947 shikimate kinase; Provisional

Probab=96.26  E-value=0.0048  Score=47.23  Aligned_cols=29  Identities=14%  Similarity=0.263  Sum_probs=24.7

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISC   38 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~V   38 (233)
                      |+.|++.|. +|+||||++..||..|   |++.
T Consensus         1 m~~I~l~G~-~GsGKst~a~~La~~l---g~~~   29 (171)
T PRK13947          1 MKNIVLIGF-MGTGKTTVGKRVATTL---SFGF   29 (171)
T ss_pred             CCeEEEEcC-CCCCHHHHHHHHHHHh---CCCE
Confidence            456999999 9999999999999888   6554

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=96.26  E-value=0.0098  Score=46.92  Aligned_cols=36  Identities=28%  Similarity=0.427  Sum_probs=29.8

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEee
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKP   43 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp   43 (233)
                      ++..|.|. +|+||||+...+...+..+|++|.++-|
T Consensus        19 ~~~~l~G~-aGtGKT~~l~~~~~~~~~~g~~v~~~ap   54 (196)
T PF13604_consen   19 RVSVLQGP-AGTGKTTLLKALAEALEAAGKRVIGLAP   54 (196)
T ss_dssp             SEEEEEES-TTSTHHHHHHHHHHHHHHTT--EEEEES
T ss_pred             eEEEEEEC-CCCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence            46777777 9999999999999999999999999763

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=96.25  E-value=0.01  Score=47.51  Aligned_cols=36  Identities=22%  Similarity=0.248  Sum_probs=31.9

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.+.+.|. +|+|||+++..++..+.+.|.++.+++
T Consensus        38 ~~~lll~G~-~G~GKT~la~~~~~~~~~~~~~~~~i~   73 (226)
T TIGR03420        38 DRFLYLWGE-SGSGKSHLLQAACAAAEERGKSAIYLP   73 (226)
T ss_pred             CCeEEEECC-CCCCHHHHHHHHHHHHHhcCCcEEEEe
Confidence            457888887 899999999999999988898988886

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK08116 hypothetical protein; Validated

Probab=96.25  E-value=0.0091  Score=49.52  Aligned_cols=34  Identities=21%  Similarity=0.447  Sum_probs=30.9

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+++.|. +|+|||.++..++..+.++|++|.++.
T Consensus       116 gl~l~G~-~GtGKThLa~aia~~l~~~~~~v~~~~  149 (268)
T PRK08116        116 GLLLWGS-VGTGKTYLAACIANELIEKGVPVIFVN  149 (268)
T ss_pred             eEEEECC-CCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence            4888887 999999999999999999999998875

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=96.24  E-value=0.0068  Score=47.69  Aligned_cols=32  Identities=16%  Similarity=0.237  Sum_probs=26.2

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +|.|+|. +|+||||++..|+..+  .+.++.++.
T Consensus         1 iigi~G~-~GsGKSTl~~~l~~~l--~~~~~~v~~   32 (198)
T cd02023           1 IIGIAGG-SGSGKTTVAEEIIEQL--GNPKVVIIS   32 (198)
T ss_pred             CEEEECC-CCCCHHHHHHHHHHHh--CCCCeEEEE
Confidence            4788898 9999999999999998  455666654

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=96.22  E-value=0.025  Score=48.13  Aligned_cols=35  Identities=23%  Similarity=0.309  Sum_probs=30.2

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ++++..|||. -|+||||+-.+|...  ..|.|++++-
T Consensus         3 ~ipv~iltGF-LGaGKTTll~~ll~~--~~~~riaVi~   37 (318)
T PRK11537          3 PIAVTLLTGF-LGAGKTTLLRHILNE--QHGYKIAVIE   37 (318)
T ss_pred             ccCEEEEEEC-CCCCHHHHHHHHHhc--ccCCcccccc
Confidence            6789999999 999999999999864  4688999875

>KOG3220|consensus

Probab=96.22  E-value=0.0076  Score=47.24  Aligned_cols=29  Identities=38%  Similarity=0.499  Sum_probs=22.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCI   39 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl   39 (233)
                      |.++.+||. -++||||++    ..|.+.|..|.
T Consensus         1 M~iVGLTGg-iatGKStVs----~~f~~~G~~vI   29 (225)
T KOG3220|consen    1 MLIVGLTGG-IATGKSTVS----QVFKALGIPVI   29 (225)
T ss_pred             CeEEEeecc-cccChHHHH----HHHHHcCCcEe
Confidence            567889998 899999987    45566777663

>TIGR00101 ureG urease accessory protein UreG

Probab=96.21  E-value=0.054  Score=42.84  Aligned_cols=33  Identities=18%  Similarity=0.239  Sum_probs=26.5

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.|+|. .|+||||+...+...+... .++.++.
T Consensus         3 ~i~i~G~-~GsGKTTll~~l~~~l~~~-~~~~~~~   35 (199)
T TIGR00101         3 KIGVAGP-VGSGKTALIEALTRALRQK-YQLAVIT   35 (199)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHhhCcC-CcEEEEe
Confidence            4788888 9999999999999888754 4566654

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=96.20  E-value=0.0057  Score=46.88  Aligned_cols=25  Identities=28%  Similarity=0.440  Sum_probs=22.4

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      |+.|+|+|. .|+||||++..||..+
T Consensus         2 ~~~i~~~G~-~GsGKst~~~~la~~l   26 (171)
T PRK03731          2 TQPLFLVGA-RGCGKTTVGMALAQAL   26 (171)
T ss_pred             CCeEEEECC-CCCCHHHHHHHHHHHh
Confidence            467999988 9999999999999887

>PRK09519 recA DNA recombination protein RecA; Reviewed

Probab=96.16  E-value=0.045  Score=51.76  Aligned_cols=36  Identities=17%  Similarity=0.065  Sum_probs=31.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..++.|.|. +|+||||++..++...+++|.+|+++|
T Consensus        60 GsiteI~G~-~GsGKTtLal~~~~~a~~~G~~v~yId   95 (790)
T PRK09519         60 GRVIEIYGP-ESSGKTTVALHAVANAQAAGGVAAFID   95 (790)
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence            346667776 999999999999999889999999998

>PLN03186 DNA repair protein RAD51 homolog; Provisional

Probab=96.15  E-value=0.066  Score=45.98  Aligned_cols=35  Identities=17%  Similarity=0.044  Sum_probs=25.8

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHH------cCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKK------RGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~------~G~~Vl~~d   42 (233)
                      .++-|+|. +|+|||++|..|+...+.      .+.+|+|+|
T Consensus       124 ~i~~i~G~-~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyId  164 (342)
T PLN03186        124 SITEIYGE-FRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYID  164 (342)
T ss_pred             eEEEEECC-CCCCccHHHHHHHHHhhcchhhCCCCceEEEEE
Confidence            34556665 999999999999965442      123899998

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=96.15  E-value=0.011  Score=47.62  Aligned_cols=35  Identities=14%  Similarity=0.278  Sum_probs=31.5

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..+++.|. .|+|||+++..++..+.++|.++.+++
T Consensus        43 ~~~~l~G~-~G~GKT~La~ai~~~~~~~~~~~~~i~   77 (227)
T PRK08903         43 RFFYLWGE-AGSGRSHLLQALVADASYGGRNARYLD   77 (227)
T ss_pred             CeEEEECC-CCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence            46778887 999999999999999989999999987

>cd04167 Snu114p Snu114p subfamily

Probab=96.13  E-value=0.1  Score=41.45  Aligned_cols=26  Identities=23%  Similarity=0.247  Sum_probs=21.0

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKK   33 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~   33 (233)
                      +.|+|.|. .|+||||++-.|......
T Consensus         1 rnv~iiG~-~~~GKTtL~~~l~~~~~~   26 (213)
T cd04167           1 RNVAIAGH-LHHGKTSLLDMLIEQTHD   26 (213)
T ss_pred             CcEEEEcC-CCCCHHHHHHHHHHhcCC
Confidence            35788888 999999999999876543

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK06547 hypothetical protein; Provisional

Probab=96.13  E-value=0.0083  Score=46.33  Aligned_cols=34  Identities=24%  Similarity=0.445  Sum_probs=26.1

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+..|.|+|. +|+||||++..|+..+   |..++-.|
T Consensus        14 ~~~~i~i~G~-~GsGKTt~a~~l~~~~---~~~~~~~d   47 (172)
T PRK06547         14 GMITVLIDGR-SGSGKTTLAGALAART---GFQLVHLD   47 (172)
T ss_pred             CCEEEEEECC-CCCCHHHHHHHHHHHh---CCCeeccc
Confidence            4567888887 9999999999999874   55554444

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=96.13  E-value=0.042  Score=47.21  Aligned_cols=36  Identities=22%  Similarity=0.205  Sum_probs=30.3

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +++++..|+|. -|+||||+-.+|...  .+|.|++++-
T Consensus         2 ~~ipv~iltGF-LGaGKTTll~~ll~~--~~~~~iavi~   37 (341)
T TIGR02475         2 AKIPVTIVTGF-LGAGKTTLIRHLLQN--AAGRRIAVIV   37 (341)
T ss_pred             CccCEEEEEEC-CCCCHHHHHHHHHhc--cCCCcEEEEE
Confidence            35788999998 999999999998864  4688999875

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=96.12  E-value=0.0093  Score=53.69  Aligned_cols=35  Identities=23%  Similarity=0.230  Sum_probs=30.8

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .++.|+|. +|+||||++..++...+++|.+++|+-
T Consensus       264 s~~li~G~-~G~GKt~l~~~f~~~~~~~ge~~~y~s  298 (484)
T TIGR02655       264 SIILATGA-TGTGKTLLVSKFLENACANKERAILFA  298 (484)
T ss_pred             cEEEEECC-CCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence            35666666 999999999999999999999999974

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>KOG1534|consensus

Probab=96.12  E-value=0.018  Score=45.66  Aligned_cols=34  Identities=15%  Similarity=0.241  Sum_probs=29.9

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..+|.|+ .|+||||.|.++......-|+++-++.
T Consensus         5 a~lV~Gp-AgSGKSTyC~~~~~h~e~~gRs~~vVN   38 (273)
T KOG1534|consen    5 AQLVMGP-AGSGKSTYCSSMYEHCETVGRSVHVVN   38 (273)
T ss_pred             eEEEEcc-CCCCcchHHHHHHHHHHhhCceeEEee
Confidence            4677888 899999999999999999999888764

>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]

Probab=96.11  E-value=0.038  Score=43.26  Aligned_cols=112  Identities=21%  Similarity=0.253  Sum_probs=67.3

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeee
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYL   83 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~   83 (233)
                      ++.+..+++|+ -++|||+--+.-++.+..+|.+|++++|-......           ...+....|+..+      ...
T Consensus         2 ~~g~l~~i~gp-M~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD~R~~-----------~~~V~Sr~G~~~~------A~~   63 (201)
T COG1435           2 KMGWLEFIYGP-MFSGKTEELLRRARRYKEAGMKVLVFKPAIDTRYG-----------VGKVSSRIGLSSE------AVV   63 (201)
T ss_pred             ceEEEEEEEcc-CcCcchHHHHHHHHHHHHcCCeEEEEecccccccc-----------cceeeeccCCccc------cee
Confidence            34577889999 99999999999999999999999999964321111           0111222332211      011


Q ss_pred             ecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcC--CCeEEEeccCcccCccCCCCchHHHHHHhCCCEEE
Q psy14904         84 FKYPISPYTSSNLENRIINTSHIINCYNYLSNL--TDVIILEGIGGFSVPFHDNENSADLAEKLGLPIIL  151 (233)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~--~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vll  151 (233)
                      +.                ....+.+.+.+....  .|.|+||=+-.+..-+  .....+++..++.||+.
T Consensus        64 i~----------------~~~~i~~~i~~~~~~~~~~~v~IDEaQF~~~~~--v~~l~~lad~lgi~Vi~  115 (201)
T COG1435          64 IP----------------SDTDIFDEIAALHEKPPVDCVLIDEAQFFDEEL--VYVLNELADRLGIPVIC  115 (201)
T ss_pred             cC----------------ChHHHHHHHHhcccCCCcCEEEEehhHhCCHHH--HHHHHHHHhhcCCEEEE
Confidence            11                123455555554333  7899999875554322  23456677776766553

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=96.11  E-value=0.032  Score=42.97  Aligned_cols=31  Identities=19%  Similarity=0.327  Sum_probs=25.0

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .++|+|. +|+|||+.|..|+..+   |.++.++.
T Consensus         3 ~ili~G~-~~sGKS~~a~~l~~~~---~~~~~~ia   33 (170)
T PRK05800          3 LILVTGG-ARSGKSRFAERLAAQS---GLQVLYIA   33 (170)
T ss_pred             EEEEECC-CCccHHHHHHHHHHHc---CCCcEeCc
Confidence            5889988 9999999999988664   55666654

>PRK12736 elongation factor Tu; Reviewed

Probab=96.09  E-value=0.098  Score=45.88  Aligned_cols=66  Identities=11%  Similarity=0.007  Sum_probs=39.5

Q ss_pred             CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904        116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ  186 (233)
Q Consensus       116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~  186 (233)
                      ++.+.+||+||.-.  +   .....-......-+++|+++..+-..+....+..++..+++.+-+++||++
T Consensus        74 ~~~i~~iDtPGh~~--f---~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D  139 (394)
T PRK12736         74 KRHYAHVDCPGHAD--Y---VKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVD  139 (394)
T ss_pred             CcEEEEEECCCHHH--H---HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecC
Confidence            56789999997421  1   011111111123467788876654445556666677778875667899998

>COG1159 Era GTPase [General function prediction only]

Probab=96.06  E-value=0.27  Score=40.99  Aligned_cols=28  Identities=29%  Similarity=0.361  Sum_probs=23.1

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .++|.|. +++||||+.-+|.      |.++.++-
T Consensus         8 fVaIiGr-PNvGKSTLlN~l~------G~KisIvS   35 (298)
T COG1159           8 FVAIIGR-PNVGKSTLLNALV------GQKISIVS   35 (298)
T ss_pred             EEEEEcC-CCCcHHHHHHHHh------cCceEeec
Confidence            5777777 9999999987664      89999875

>KOG2749|consensus

Probab=96.03  E-value=0.041  Score=46.89  Aligned_cols=37  Identities=22%  Similarity=0.259  Sum_probs=34.2

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..++++|.|+ ..+||||+|.-|..+..+.|+++++++
T Consensus       102 ~GPrv~vVGp-~d~GKsTl~r~L~nyavk~gr~Plfv~  138 (415)
T KOG2749|consen  102 YGPRVMVVGP-TDVGKSTLCRILLNYAVKQGRRPLFVE  138 (415)
T ss_pred             cCCEEEEECC-CccchHHHHHHHHHHHHHcCCcceEEE
Confidence            3678999998 899999999999999999999999987

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=96.02  E-value=0.0076  Score=48.02  Aligned_cols=33  Identities=21%  Similarity=0.417  Sum_probs=26.0

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHH--------HHcCCeeeEEe
Q psy14904          9 YFITGTNTNIGKTIISCALLSEF--------KKRGISCIGMK   42 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l--------~~~G~~Vl~~d   42 (233)
                      .+|.|+ +|+|||++.+.++..+        ...+.+++++-
T Consensus        20 ~~i~Gp-PGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~   60 (236)
T PF13086_consen   20 TLIQGP-PGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVS   60 (236)
T ss_dssp             EEEE-S-TTSSHHHHHHHHHHHH-------HCCCSS-EEEEE
T ss_pred             EEEECC-CCCChHHHHHHHHHHhccchhhhhhhccccceeec
Confidence            556666 9999999999999998        56788999975

>PRK13973 thymidylate kinase; Provisional

Probab=96.02  E-value=0.016  Score=46.33  Aligned_cols=36  Identities=14%  Similarity=0.134  Sum_probs=32.3

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.|+|-|. .|+||||.+..|+.+|..+|++|.+..
T Consensus         3 g~~IviEG~-dGsGKtTq~~~l~~~l~~~g~~~~~~~   38 (213)
T PRK13973          3 GRFITFEGG-EGAGKSTQIRLLAERLRAAGYDVLVTR   38 (213)
T ss_pred             ceEEEEEcC-CCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence            357888888 999999999999999999999998875

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=96.01  E-value=0.0086  Score=52.51  Aligned_cols=32  Identities=22%  Similarity=0.285  Sum_probs=28.9

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISC   38 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~V   38 (233)
                      ..-|.|+|. +|.||||.+.+||.+++.+|+=|
T Consensus       263 aeGILIAG~-PGaGKsTFaqAlAefy~~~GkiV  294 (604)
T COG1855         263 AEGILIAGA-PGAGKSTFAQALAEFYASQGKIV  294 (604)
T ss_pred             hcceEEecC-CCCChhHHHHHHHHHHHhcCcEE
Confidence            456899999 99999999999999999999844

>TIGR00485 EF-Tu translation elongation factor TU

Probab=96.00  E-value=0.25  Score=43.33  Aligned_cols=66  Identities=15%  Similarity=0.078  Sum_probs=39.4

Q ss_pred             CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904        116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ  186 (233)
Q Consensus       116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~  186 (233)
                      ++.+.+||+||.-.  +..  ....-+... .-+++|.+...+-..++...+..+...+++.+=+++||++
T Consensus        74 ~~~~~liDtpGh~~--f~~--~~~~~~~~~-D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~D  139 (394)
T TIGR00485        74 NRHYAHVDCPGHAD--YVK--NMITGAAQM-DGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCD  139 (394)
T ss_pred             CEEEEEEECCchHH--HHH--HHHHHHhhC-CEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecc
Confidence            45688999997521  100  011111112 2467788877654445566666777778886656899998

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6

Probab=95.99  E-value=0.0059  Score=54.78  Aligned_cols=37  Identities=22%  Similarity=0.249  Sum_probs=26.3

Q ss_pred             CceeEEEEe---CCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904          5 NFLHYFITG---TNTNIGKTIISCALLSEFKKRGISCIGM   41 (233)
Q Consensus         5 ~~~~i~i~~---~kggvGKTt~a~~La~~l~~~G~~Vl~~   41 (233)
                      +.|-|.||+   +.-|.||||++.+|+.+|.+.|+++.+.
T Consensus        53 ~gklilVTaitPTp~GEGKtTttiGL~~al~~lg~~~~~~   92 (557)
T PF01268_consen   53 DGKLILVTAITPTPAGEGKTTTTIGLAQALNRLGKKAIAA   92 (557)
T ss_dssp             --EEEEEEESS--TTS-SHHHHHHHHHHHHHHTT--EEEE
T ss_pred             CCcEEEEEecCCCCCCCCceeHHHHHHHHHHhcCCceEEE
Confidence            356666654   7789999999999999999999988763

3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=95.98  E-value=0.0084  Score=46.47  Aligned_cols=26  Identities=19%  Similarity=0.312  Sum_probs=23.2

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      ++++|+|.|. +|+||||++..|+..+
T Consensus         2 ~~~ii~i~G~-~GsGKsTl~~~l~~~~   27 (188)
T TIGR01360         2 KCKIIFIVGG-PGSGKGTQCEKIVEKY   27 (188)
T ss_pred             CCcEEEEECC-CCCCHHHHHHHHHHHh
Confidence            4678999999 9999999999999876

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=95.97  E-value=0.0085  Score=45.59  Aligned_cols=25  Identities=36%  Similarity=0.461  Sum_probs=19.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904          9 YFITGTNTNIGKTIISCALLSEFKKRGISC   38 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l~~~G~~V   38 (233)
                      |+|+|+ .|+||||++..|+..    |..+
T Consensus         2 I~i~G~-~stGKTTL~~~L~~~----g~~~   26 (163)
T PF13521_consen    2 IVITGG-PSTGKTTLIEALAAR----GYPV   26 (163)
T ss_dssp             EEEE---TTSHHHHHHHHHHHH----T-EE
T ss_pred             EEEECC-CCCCHHHHHHHHHHc----CCeE
Confidence            889999 999999999999966    6654

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=95.97  E-value=0.014  Score=42.26  Aligned_cols=37  Identities=19%  Similarity=0.184  Sum_probs=27.5

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHc-----CCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKR-----GISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~-----G~~Vl~~d   42 (233)
                      .-+.++|.|. +|+|||+++..++..+...     ..+++.+.
T Consensus         3 ~~~~~~i~G~-~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~   44 (131)
T PF13401_consen    3 SQRILVISGP-PGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN   44 (131)
T ss_dssp             ----EEEEE--TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_pred             CCcccEEEcC-CCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE
Confidence            3456788888 9999999999999999875     66777766

>PRK00131 aroK shikimate kinase; Reviewed

Probab=95.95  E-value=0.0088  Score=45.66  Aligned_cols=25  Identities=20%  Similarity=0.211  Sum_probs=22.3

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      .+.|.++|. +|+||||++..||..|
T Consensus         4 ~~~i~l~G~-~GsGKstla~~La~~l   28 (175)
T PRK00131          4 GPNIVLIGF-MGAGKSTIGRLLAKRL   28 (175)
T ss_pred             CCeEEEEcC-CCCCHHHHHHHHHHHh
Confidence            347888888 9999999999999998

>PRK06851 hypothetical protein; Provisional

Probab=95.94  E-value=0.02  Score=49.46  Aligned_cols=35  Identities=17%  Similarity=0.269  Sum_probs=29.9

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGM   41 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~   41 (233)
                      .+++.++|. +|+||||+...++..+.++|++|-++
T Consensus        30 ~~~~il~G~-pGtGKStl~~~i~~~~~~~g~~Ve~~   64 (367)
T PRK06851         30 NRIFILKGG-PGTGKSTLMKKIGEEFLEKGYDVEFL   64 (367)
T ss_pred             ceEEEEECC-CCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence            355666666 99999999999999999999998875

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=95.94  E-value=0.012  Score=50.45  Aligned_cols=33  Identities=18%  Similarity=0.381  Sum_probs=29.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHH-HcCCeeeEEe
Q psy14904          9 YFITGTNTNIGKTIISCALLSEFK-KRGISCIGMK   42 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l~-~~G~~Vl~~d   42 (233)
                      ++++|. +|+||||++..|+..|. .+|++|.+++
T Consensus         2 ~~l~Gl-~GaGKST~~~~l~~~l~~~~g~~v~~~~   35 (340)
T TIGR03575         2 CVLCGL-PAAGKSTLARSLSATLRRERGWAVAVIT   35 (340)
T ss_pred             eEEECC-CCCCHHHHHHHHHHHHHhccCCeEEEEc
Confidence            456777 99999999999999998 5899999986

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>PRK05595 replicative DNA helicase; Provisional

Probab=95.93  E-value=0.012  Score=52.47  Aligned_cols=34  Identities=18%  Similarity=0.227  Sum_probs=28.1

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHH-HcCCeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFK-KRGISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~-~~G~~Vl~~d   42 (233)
                      .+.|++. +|+|||++++++|..++ ++|++|++|-
T Consensus       203 liviaar-pg~GKT~~al~ia~~~a~~~g~~vl~fS  237 (444)
T PRK05595        203 MILIAAR-PSMGKTTFALNIAEYAALREGKSVAIFS  237 (444)
T ss_pred             EEEEEec-CCCChHHHHHHHHHHHHHHcCCcEEEEe
Confidence            3445555 99999999999999877 5799999986

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=95.92  E-value=0.063  Score=47.88  Aligned_cols=67  Identities=15%  Similarity=0.038  Sum_probs=41.8

Q ss_pred             cCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcH-------HHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904        115 NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCI-------NNALLSLEAINSRGLKLIGWVANHTQ  186 (233)
Q Consensus       115 ~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~-------~~~~~~~~~l~~~~~~i~GiVlN~~~  186 (233)
                      +++.+.|||+||...  +.   .....+.....-+++|+++..+..       .++...+..++..+++-+-+++||++
T Consensus        83 ~~~~i~lIDtPGh~~--f~---~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD  156 (446)
T PTZ00141         83 PKYYFTIIDAPGHRD--FI---KNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMD  156 (446)
T ss_pred             CCeEEEEEECCChHH--HH---HHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccc
Confidence            467899999997431  10   111111112234677777765432       35666777777889886778999998

>PRK07261 topology modulation protein; Provisional

Probab=95.91  E-value=0.0086  Score=46.16  Aligned_cols=23  Identities=22%  Similarity=0.369  Sum_probs=20.0

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      .|+|+|. +|+||||++..|+..+
T Consensus         2 ri~i~G~-~GsGKSTla~~l~~~~   24 (171)
T PRK07261          2 KIAIIGY-SGSGKSTLARKLSQHY   24 (171)
T ss_pred             EEEEEcC-CCCCHHHHHHHHHHHh
Confidence            4889998 9999999999987665

>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins

Probab=95.89  E-value=0.019  Score=49.71  Aligned_cols=39  Identities=26%  Similarity=0.524  Sum_probs=33.1

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIA   45 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~   45 (233)
                      ...++|+|. +|+|||++...|...+..+|++|++.=|.+
T Consensus        22 ~~~~fv~G~-~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg   60 (364)
T PF05970_consen   22 GLNFFVTGP-AGTGKSFLIKAIIDYLRSRGKKVLVTAPTG   60 (364)
T ss_pred             CcEEEEEcC-CCCChhHHHHHHHHHhccccceEEEecchH
Confidence            456788888 999999999999999999899998876543

The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].

>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]

Probab=95.88  E-value=0.14  Score=45.44  Aligned_cols=37  Identities=30%  Similarity=0.384  Sum_probs=32.5

Q ss_pred             ceeEEEEe-CCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITG-TNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~-~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +|-|+||| -=+|.||=.+|+.|+..|..+|++|..+|
T Consensus         1 ~KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~K   38 (533)
T COG0504           1 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQK   38 (533)
T ss_pred             CeEEEEeCCeecccccHHHHHHHHHHHHHCCceEEEEe
Confidence            46788887 34789999999999999999999999976

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=95.87  E-value=0.0085  Score=44.37  Aligned_cols=23  Identities=22%  Similarity=0.316  Sum_probs=20.5

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      +|+|+|+ +|+||||++..|+..+
T Consensus         1 ~I~i~G~-~GsGKst~a~~la~~~   23 (147)
T cd02020           1 IIAIDGP-AGSGKSTVAKLLAKKL   23 (147)
T ss_pred             CEEEECC-CCCCHHHHHHHHHHHh
Confidence            4788888 9999999999999876

>PRK04328 hypothetical protein; Provisional

Probab=95.86  E-value=0.017  Score=47.41  Aligned_cols=36  Identities=19%  Similarity=0.159  Sum_probs=31.6

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      -.++.|+|. +|+|||+++..++..-+++|.+++++.
T Consensus        23 gs~ili~G~-pGsGKT~l~~~fl~~~~~~ge~~lyis   58 (249)
T PRK04328         23 RNVVLLSGG-PGTGKSIFSQQFLWNGLQMGEPGVYVA   58 (249)
T ss_pred             CcEEEEEcC-CCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence            346778887 999999999999988888899999986

>PLN03126 Elongation factor Tu; Provisional

Probab=95.84  E-value=0.19  Score=45.29  Aligned_cols=66  Identities=11%  Similarity=-0.026  Sum_probs=41.1

Q ss_pred             CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904        116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ  186 (233)
Q Consensus       116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~  186 (233)
                      ++.+.+||+||.-.  +   ..+..-......-+++|.++..+-..++...+..+...+++.+-+++||++
T Consensus       143 ~~~i~liDtPGh~~--f---~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~D  208 (478)
T PLN03126        143 NRHYAHVDCPGHAD--Y---VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQD  208 (478)
T ss_pred             CcEEEEEECCCHHH--H---HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeccc
Confidence            56789999997521  1   011111111223567788877655455666677777788875667899998

>PRK08760 replicative DNA helicase; Provisional

Probab=95.84  E-value=0.015  Score=52.17  Aligned_cols=34  Identities=9%  Similarity=0.054  Sum_probs=28.2

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHH-cCCeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKK-RGISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~-~G~~Vl~~d   42 (233)
                      .+.|++. +|+|||++++++|...+. .|++|++|-
T Consensus       231 LivIaar-Pg~GKTafal~iA~~~a~~~g~~V~~fS  265 (476)
T PRK08760        231 LIILAAR-PAMGKTTFALNIAEYAAIKSKKGVAVFS  265 (476)
T ss_pred             eEEEEeC-CCCChhHHHHHHHHHHHHhcCCceEEEe
Confidence            4555555 999999999999998875 599999985

>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily

Probab=95.84  E-value=0.014  Score=51.65  Aligned_cols=34  Identities=15%  Similarity=0.273  Sum_probs=28.9

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHH-HcCCeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFK-KRGISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~-~~G~~Vl~~d   42 (233)
                      .+.|++. +|+|||+++.++|..++ ++|++|++|.
T Consensus       196 liviag~-pg~GKT~~al~ia~~~a~~~g~~v~~fS  230 (421)
T TIGR03600       196 LIVIGAR-PSMGKTTLALNIAENVALREGKPVLFFS  230 (421)
T ss_pred             eEEEEeC-CCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            4555555 99999999999999888 6799999986

Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=95.84  E-value=0.015  Score=50.92  Aligned_cols=35  Identities=23%  Similarity=0.175  Sum_probs=30.0

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGM   41 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~   41 (233)
                      .-+|.|+|. .|+||||++..|...+...|+++..+
T Consensus       212 PlIIGIsG~-qGSGKSTLa~~L~~lL~~~g~~vgvI  246 (460)
T PLN03046        212 PLVIGFSAP-QGCGKTTLVFALDYLFRVTGRKSATL  246 (460)
T ss_pred             CEEEEEECC-CCCCHHHHHHHHHHHhcccCCceEEE
Confidence            347788888 99999999999999998888888776

>PRK13949 shikimate kinase; Provisional

Probab=95.82  E-value=0.0097  Score=45.79  Aligned_cols=25  Identities=32%  Similarity=0.488  Sum_probs=22.7

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      |+.|+|.|. +|+||||++..||..+
T Consensus         1 m~~I~liG~-~GsGKstl~~~La~~l   25 (169)
T PRK13949          1 MARIFLVGY-MGAGKTTLGKALAREL   25 (169)
T ss_pred             CcEEEEECC-CCCCHHHHHHHHHHHc
Confidence            457999999 9999999999999988

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=95.81  E-value=0.0091  Score=45.27  Aligned_cols=28  Identities=25%  Similarity=0.415  Sum_probs=22.8

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeee
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCI   39 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl   39 (233)
                      +|+|+|. +|+||||+|.-||..+   |++..
T Consensus         2 ~ItIsG~-pGsG~TTva~~lAe~~---gl~~v   29 (179)
T COG1102           2 VITISGL-PGSGKTTVARELAEHL---GLKLV   29 (179)
T ss_pred             EEEeccC-CCCChhHHHHHHHHHh---CCcee
Confidence            4777777 9999999999999887   66553

>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]

Probab=95.79  E-value=0.011  Score=50.12  Aligned_cols=38  Identities=18%  Similarity=0.143  Sum_probs=34.3

Q ss_pred             CceeEEEEe-CCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITG-TNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~-~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.++|.|-| +=||.|||-++.-||..|.++|.++.++.
T Consensus        46 pvPVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvS   84 (336)
T COG1663          46 PVPVICVGNLTVGGTGKTPVVIWLAEALQARGVRVGVVS   84 (336)
T ss_pred             CCCEEEEccEEECCCCcCHHHHHHHHHHHhcCCeeEEEe
Confidence            457888888 56999999999999999999999999985

>PRK12735 elongation factor Tu; Reviewed

Probab=95.79  E-value=0.14  Score=44.94  Aligned_cols=66  Identities=12%  Similarity=0.008  Sum_probs=38.1

Q ss_pred             CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904        116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ  186 (233)
Q Consensus       116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~  186 (233)
                      +..+.+||+||.-.  +   .....-+.....-+++|.++..+-..++...+..+...+++.+-+++||++
T Consensus        74 ~~~i~~iDtPGh~~--f---~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~D  139 (396)
T PRK12735         74 NRHYAHVDCPGHAD--Y---VKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCD  139 (396)
T ss_pred             CcEEEEEECCCHHH--H---HHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecC
Confidence            44689999997421  0   001111111112467777776554444555666667778886656799998

>PRK01184 hypothetical protein; Provisional

Probab=95.77  E-value=0.014  Score=45.37  Aligned_cols=30  Identities=20%  Similarity=0.214  Sum_probs=22.7

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG   40 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~   40 (233)
                      |++|.++|. +|+||||++. +   +++.|+.+.-
T Consensus         1 ~~~i~l~G~-~GsGKsT~a~-~---~~~~g~~~i~   30 (184)
T PRK01184          1 MKIIGVVGM-PGSGKGEFSK-I---AREMGIPVVV   30 (184)
T ss_pred             CcEEEEECC-CCCCHHHHHH-H---HHHcCCcEEE
Confidence            568999999 9999999864 3   4556876644

>PLN02796 D-glycerate 3-kinase

Probab=95.76  E-value=0.015  Score=49.66  Aligned_cols=34  Identities=26%  Similarity=0.313  Sum_probs=28.9

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGM   41 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~   41 (233)
                      -+|.|+|. .|+||||++..|...+...|+++..+
T Consensus       101 liIGI~G~-sGSGKSTLa~~L~~lL~~~g~~~g~I  134 (347)
T PLN02796        101 LVIGISAP-QGCGKTTLVFALVYLFNATGRRAASL  134 (347)
T ss_pred             EEEEEECC-CCCcHHHHHHHHHHHhcccCCceeEE
Confidence            35888887 99999999999999998878777654

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=95.76  E-value=0.018  Score=41.64  Aligned_cols=30  Identities=27%  Similarity=0.466  Sum_probs=24.8

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      |.+.|. +|+|||+++..+|..+   |..+..++
T Consensus         1 ill~G~-~G~GKT~l~~~la~~l---~~~~~~i~   30 (132)
T PF00004_consen    1 ILLHGP-PGTGKTTLARALAQYL---GFPFIEID   30 (132)
T ss_dssp             EEEESS-TTSSHHHHHHHHHHHT---TSEEEEEE
T ss_pred             CEEECc-CCCCeeHHHHHHHhhc---cccccccc
Confidence            467777 9999999999999998   56676665

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>TIGR02239 recomb_RAD51 DNA repair protein RAD51

Probab=95.75  E-value=0.097  Score=44.50  Aligned_cols=36  Identities=19%  Similarity=0.089  Sum_probs=26.4

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHH---cC---CeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKK---RG---ISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~---~G---~~Vl~~d   42 (233)
                      ..++.|.|. +|+|||+++..++...+.   .|   .+|+++|
T Consensus        96 g~i~~i~G~-~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyId  137 (316)
T TIGR02239        96 GSITEIFGE-FRTGKTQLCHTLAVTCQLPIDQGGGEGKALYID  137 (316)
T ss_pred             CeEEEEECC-CCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEE
Confidence            345666665 999999999999874332   33   4889998

This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).

>PRK08506 replicative DNA helicase; Provisional

Probab=95.74  E-value=0.016  Score=52.02  Aligned_cols=34  Identities=12%  Similarity=0.147  Sum_probs=29.0

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.|.+..+|+|||+++.++|...+++|++|++|-
T Consensus       194 LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fS  227 (472)
T PRK08506        194 LIIIAARPSMGKTTLCLNMALKALNQDKGVAFFS  227 (472)
T ss_pred             eEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEe
Confidence            4444445999999999999999999999999985

>PLN02327 CTP synthase

Probab=95.70  E-value=0.22  Score=45.22  Aligned_cols=37  Identities=19%  Similarity=0.346  Sum_probs=33.0

Q ss_pred             ceeEEEEe-CCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITG-TNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~-~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ||-|+||| -=.|.||=.+++.|+..|..+|++|..+|
T Consensus         1 mk~ifvtGGV~S~lGKGi~~aSig~ll~~~g~~V~~~K   38 (557)
T PLN02327          1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIK   38 (557)
T ss_pred             CcEEEEcCCcccCcchHHHHHHHHHHHHHCCCceeeee
Confidence            37788887 45899999999999999999999999976

>PRK03839 putative kinase; Provisional

Probab=95.69  E-value=0.012  Score=45.50  Aligned_cols=23  Identities=39%  Similarity=0.482  Sum_probs=20.8

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      .|+|+|. +|+||||++..||..+
T Consensus         2 ~I~l~G~-pGsGKsT~~~~La~~~   24 (180)
T PRK03839          2 IIAITGT-PGVGKTTVSKLLAEKL   24 (180)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHh
Confidence            4889998 9999999999998887

>PRK12338 hypothetical protein; Provisional

Probab=95.68  E-value=0.011  Score=50.02  Aligned_cols=28  Identities=25%  Similarity=0.390  Sum_probs=23.3

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISC   38 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~V   38 (233)
                      .+|+|+|+ +|+||||+|..||..+   |.+.
T Consensus         5 ~ii~i~G~-sGsGKST~a~~la~~l---~~~~   32 (319)
T PRK12338          5 YVILIGSA-SGIGKSTIASELARTL---NIKH   32 (319)
T ss_pred             EEEEEECC-CCCCHHHHHHHHHHHC---CCeE
Confidence            47888887 9999999999999887   5544

>TIGR00665 DnaB replicative DNA helicase

Probab=95.67  E-value=0.022  Score=50.48  Aligned_cols=34  Identities=12%  Similarity=0.162  Sum_probs=28.4

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHH-cCCeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKK-RGISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~-~G~~Vl~~d   42 (233)
                      .+.|++. +|+|||+++.+++..++. .|++|++|-
T Consensus       197 l~vi~g~-pg~GKT~~~l~~a~~~a~~~g~~vl~~S  231 (434)
T TIGR00665       197 LIILAAR-PSMGKTAFALNIAENAAIKEGKPVAFFS  231 (434)
T ss_pred             EEEEEeC-CCCChHHHHHHHHHHHHHhCCCeEEEEe
Confidence            4555555 999999999999999886 699999985

This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.

>PF13173 AAA_14: AAA domain

Probab=95.67  E-value=0.019  Score=41.88  Aligned_cols=35  Identities=17%  Similarity=0.190  Sum_probs=29.9

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      -++++|+|. -||||||+...++..+. ...++++++
T Consensus         2 ~~~~~l~G~-R~vGKTtll~~~~~~~~-~~~~~~yi~   36 (128)
T PF13173_consen    2 RKIIILTGP-RGVGKTTLLKQLAKDLL-PPENILYIN   36 (128)
T ss_pred             CCeEEEECC-CCCCHHHHHHHHHHHhc-ccccceeec
Confidence            367899999 89999999999998887 567888876

>PRK14528 adenylate kinase; Provisional

Probab=95.67  E-value=0.013  Score=45.75  Aligned_cols=31  Identities=19%  Similarity=0.253  Sum_probs=24.8

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG   40 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~   40 (233)
                      |+.|.|+|. +|+||||+|..|+..+   |..+..
T Consensus         1 ~~~i~i~G~-pGsGKtt~a~~la~~~---~~~~is   31 (186)
T PRK14528          1 MKNIIFMGP-PGAGKGTQAKILCERL---SIPQIS   31 (186)
T ss_pred             CcEEEEECC-CCCCHHHHHHHHHHHh---CCCeee
Confidence            467889998 9999999999998776   555433

>PRK14530 adenylate kinase; Provisional

Probab=95.65  E-value=0.013  Score=46.72  Aligned_cols=23  Identities=30%  Similarity=0.466  Sum_probs=21.3

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      .|+|.|. +|+||||++..||..+
T Consensus         5 ~I~i~G~-pGsGKsT~~~~La~~~   27 (215)
T PRK14530          5 RILLLGA-PGAGKGTQSSNLAEEF   27 (215)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHh
Confidence            6899999 9999999999999887

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=95.65  E-value=0.024  Score=45.13  Aligned_cols=39  Identities=31%  Similarity=0.447  Sum_probs=28.6

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCc
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGA   48 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~   48 (233)
                      |+++.|.|+ +|+|||.++..||..+   |..|...|-+++..
T Consensus         1 M~v~~i~Gp-T~tGKt~~ai~lA~~~---g~pvI~~Driq~y~   39 (233)
T PF01745_consen    1 MKVYLIVGP-TGTGKTALAIALAQKT---GAPVISLDRIQCYP   39 (233)
T ss_dssp             -EEEEEE-S-TTSSHHHHHHHHHHHH-----EEEEE-SGGG-G
T ss_pred             CcEEEEECC-CCCChhHHHHHHHHHh---CCCEEEecceeccc
Confidence            688999999 9999999999999877   88999998655433

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>PRK06749 replicative DNA helicase; Provisional

Probab=95.64  E-value=0.017  Score=51.19  Aligned_cols=34  Identities=18%  Similarity=0.252  Sum_probs=29.4

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.|.+..+|.|||++++++|...+++|++|++|-
T Consensus       188 LiiIaarPgmGKTafal~ia~~~a~~g~~v~~fS  221 (428)
T PRK06749        188 FVVLGARPSMGKTAFALNVGLHAAKSGAAVGLFS  221 (428)
T ss_pred             EEEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEE
Confidence            4455555999999999999999999999999986

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=95.64  E-value=0.021  Score=44.90  Aligned_cols=33  Identities=21%  Similarity=0.253  Sum_probs=25.8

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ||..|.|||. .|+||||++..|+.    .|..+.-.|
T Consensus         1 ~~~~i~ltG~-~gsGKst~~~~l~~----~g~~~i~~D   33 (194)
T PRK00081          1 MMLIIGLTGG-IGSGKSTVANLFAE----LGAPVIDAD   33 (194)
T ss_pred             CCeEEEEECC-CCCCHHHHHHHHHH----cCCEEEEec
Confidence            3578999999 99999999987765    477765444

>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51

Probab=95.63  E-value=0.049  Score=44.83  Aligned_cols=35  Identities=20%  Similarity=0.158  Sum_probs=28.3

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHH------cCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKK------RGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~------~G~~Vl~~d   42 (233)
                      .+.=|+|. +|+|||.+|..|+..-..      .+.+|+|+|
T Consensus        39 ~itEi~G~-~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyid   79 (256)
T PF08423_consen   39 SITEIVGE-SGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYID   79 (256)
T ss_dssp             SEEEEEES-TTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEE
T ss_pred             cEEEEEEe-cccccchHHHHHHHHhhcccccccCCCceEEEe
Confidence            46678888 999999999999876542      256999998

It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....

>TIGR00337 PyrG CTP synthase

Probab=95.62  E-value=0.22  Score=44.97  Aligned_cols=37  Identities=27%  Similarity=0.439  Sum_probs=33.0

Q ss_pred             ceeEEEEe-CCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITG-TNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~-~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ||-|+||| -=.|.||=.+++.|+..|..+|++|..+|
T Consensus         1 ~k~i~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K   38 (525)
T TIGR00337         1 MKYIFVTGGVVSSLGKGITAASIGRLLKARGLKVTIIK   38 (525)
T ss_pred             CcEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEe
Confidence            47788887 45899999999999999999999999976

CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=95.60  E-value=0.38  Score=42.37  Aligned_cols=84  Identities=18%  Similarity=0.180  Sum_probs=53.4

Q ss_pred             CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhh
Q psy14904        116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANE  195 (233)
Q Consensus       116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~  195 (233)
                      ++=+=|+||||.-.  +.+  .......+.| ..++|.++..|--.+++...+..+-++++|+-+ +||.+ ...+..-+
T Consensus        80 ~~~iNLLDTPGHeD--FSE--DTYRtLtAvD-sAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TF-iNKlD-R~~rdP~E  152 (528)
T COG4108          80 DCLVNLLDTPGHED--FSE--DTYRTLTAVD-SAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTF-INKLD-REGRDPLE  152 (528)
T ss_pred             CeEEeccCCCCccc--cch--hHHHHHHhhh-eeeEEEecccCccHHHHHHHHHHhhcCCceEEE-eeccc-cccCChHH
Confidence            45566889987631  221  2233333333 468888887754456677777778889997754 89998 33333446


Q ss_pred             hHHHHHhhcCC
Q psy14904        196 NYIELTKYLNV  206 (233)
Q Consensus       196 ~~~~l~~~~~~  206 (233)
                      .++++++.+++
T Consensus       153 LLdEiE~~L~i  163 (528)
T COG4108         153 LLDEIEEELGI  163 (528)
T ss_pred             HHHHHHHHhCc
Confidence            78888887665

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=95.58  E-value=0.032  Score=44.41  Aligned_cols=37  Identities=24%  Similarity=0.335  Sum_probs=33.3

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.+.|+|-|. =|+||||.+..|+..|..+|++|.+.+
T Consensus         2 ~g~fI~iEGi-DGaGKTT~~~~L~~~l~~~g~~v~~tr   38 (208)
T COG0125           2 KGMFIVIEGI-DGAGKTTQAELLKERLEERGIKVVLTR   38 (208)
T ss_pred             CceEEEEECC-CCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence            3567888888 899999999999999999999999876

>COG1160 Predicted GTPases [General function prediction only]

Probab=95.57  E-value=0.42  Score=42.14  Aligned_cols=29  Identities=24%  Similarity=0.232  Sum_probs=24.4

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ++|+|.|. ++|||||+--.|+      |.|+.++.
T Consensus         4 ~~VAIVGR-PNVGKSTLFNRL~------g~r~AIV~   32 (444)
T COG1160           4 PVVAIVGR-PNVGKSTLFNRLT------GRRIAIVS   32 (444)
T ss_pred             CEEEEECC-CCCcHHHHHHHHh------CCeeeEee
Confidence            68999998 9999999875553      78888886

>PRK14531 adenylate kinase; Provisional

Probab=95.56  E-value=0.016  Score=45.08  Aligned_cols=24  Identities=17%  Similarity=0.249  Sum_probs=21.4

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      +.|.|.|. +|+||||++..||..+
T Consensus         3 ~~i~i~G~-pGsGKsT~~~~la~~~   26 (183)
T PRK14531          3 QRLLFLGP-PGAGKGTQAARLCAAH   26 (183)
T ss_pred             cEEEEECC-CCCCHHHHHHHHHHHh
Confidence            46888888 9999999999999886

>PRK08006 replicative DNA helicase; Provisional

Probab=95.55  E-value=0.022  Score=51.11  Aligned_cols=34  Identities=15%  Similarity=0.216  Sum_probs=28.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHH-cCCeeeEEe
Q psy14904          9 YFITGTNTNIGKTIISCALLSEFKK-RGISCIGMK   42 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l~~-~G~~Vl~~d   42 (233)
                      +.|.+..+|.|||+++.|+|...+. +|++|++|-
T Consensus       226 LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fS  260 (471)
T PRK08006        226 LIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFS  260 (471)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEe
Confidence            4455555999999999999999884 699999985

>PRK00300 gmk guanylate kinase; Provisional

Probab=95.53  E-value=0.014  Score=45.98  Aligned_cols=30  Identities=27%  Similarity=0.377  Sum_probs=24.6

Q ss_pred             CCCCCceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904          1 MINKNFLHYFITGTNTNIGKTIISCALLSEFK   32 (233)
Q Consensus         1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l~   32 (233)
                      |+.+ .+.|+|+|. +|+||||++..|+..+.
T Consensus         1 ~~~~-g~~i~i~G~-sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          1 MMRR-GLLIVLSGP-SGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCC-CCEEEEECC-CCCCHHHHHHHHHhhCc
Confidence            4443 568999998 99999999999988764

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=95.53  E-value=0.012  Score=45.45  Aligned_cols=23  Identities=22%  Similarity=0.421  Sum_probs=20.5

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      +|+|+|. +|+||||+|..||..+
T Consensus         1 ~i~i~G~-pGsGKst~a~~la~~~   23 (183)
T TIGR01359         1 VVFVLGG-PGSGKGTQCAKIVENF   23 (183)
T ss_pred             CEEEECC-CCCCHHHHHHHHHHHc
Confidence            4788888 9999999999999877

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK13507 formate--tetrahydrofolate ligase; Provisional

Probab=95.53  E-value=0.0092  Score=53.54  Aligned_cols=36  Identities=25%  Similarity=0.198  Sum_probs=30.2

Q ss_pred             ceeEEEE---eCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904          6 FLHYFIT---GTNTNIGKTIISCALLSEFKKRGISCIGM   41 (233)
Q Consensus         6 ~~~i~i~---~~kggvGKTt~a~~La~~l~~~G~~Vl~~   41 (233)
                      .|.|.||   .+.-|.||||++.+|+.+|.+.|+++.+.
T Consensus        63 gklIlVTaitPTP~GEGKtTttIGL~~aL~~lgk~~~~~  101 (587)
T PRK13507         63 GKYIDVTAITPTPLGEGKSTTTMGLVQGLGKRGKKVSGA  101 (587)
T ss_pred             CeEEEEeccCCCCCCCCccchhhhHHHHHHhhcCceEEE
Confidence            4556555   47789999999999999999999998874

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=95.53  E-value=0.012  Score=46.17  Aligned_cols=23  Identities=35%  Similarity=0.309  Sum_probs=20.4

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      +|.|+|. +|+||||+|..|+..+
T Consensus         1 ii~i~G~-sgsGKTtla~~l~~~~   23 (187)
T cd02024           1 IVGISGV-TNSGKTTLAKLLQRIL   23 (187)
T ss_pred             CEEEECC-CCCCHHHHHHHHHHHc
Confidence            4778877 9999999999999987

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=95.52  E-value=0.029  Score=43.30  Aligned_cols=37  Identities=19%  Similarity=0.267  Sum_probs=30.9

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHH-HcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFK-KRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~-~~G~~Vl~~d   42 (233)
                      +..++.++|+ +|||||.++..||..|. ....+...+|
T Consensus         2 p~~~~ll~Gp-sGvGKT~la~~la~~l~~~~~~~~~~~d   39 (171)
T PF07724_consen    2 PKSNFLLAGP-SGVGKTELAKALAELLFVGSERPLIRID   39 (171)
T ss_dssp             -SEEEEEESS-TTSSHHHHHHHHHHHHT-SSCCEEEEEE
T ss_pred             CEEEEEEECC-CCCCHHHHHHHHHHHhccCCccchHHHh
Confidence            4668999999 99999999999999998 5666777777

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=95.49  E-value=0.028  Score=45.40  Aligned_cols=35  Identities=17%  Similarity=0.052  Sum_probs=28.7

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG   40 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~   40 (233)
                      +..++.|+|. .|+||||++..|+..+...+-.+.+
T Consensus        32 ~~~iigi~G~-~GsGKTTl~~~L~~~l~~~~g~~~v   66 (229)
T PRK09270         32 RRTIVGIAGP-PGAGKSTLAEFLEALLQQDGELPAI   66 (229)
T ss_pred             CCEEEEEECC-CCCCHHHHHHHHHHHhhhccCCceE
Confidence            3457888887 9999999999999999987766443

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=95.49  E-value=0.016  Score=45.75  Aligned_cols=29  Identities=31%  Similarity=0.300  Sum_probs=23.2

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISC   38 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~V   38 (233)
                      .++|+|+|. +|+||||+|..|+..+   |..+
T Consensus         3 ~~~i~i~G~-~G~GKst~a~~l~~~~---~~~~   31 (197)
T PRK12339          3 STIHFIGGI-PGVGKTSISGYIARHR---AIDI   31 (197)
T ss_pred             ceEEEEECC-CCCCHHHHHHHHHHhc---CCeE
Confidence            346777777 9999999999999875   5544

>PRK02496 adk adenylate kinase; Provisional

Probab=95.48  E-value=0.017  Score=44.79  Aligned_cols=24  Identities=17%  Similarity=0.268  Sum_probs=21.0

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      +.|.|+|. +|+||||++..|+..+
T Consensus         2 ~~i~i~G~-pGsGKst~a~~la~~~   25 (184)
T PRK02496          2 TRLIFLGP-PGAGKGTQAVVLAEHL   25 (184)
T ss_pred             eEEEEECC-CCCCHHHHHHHHHHHh
Confidence            34888888 9999999999998877

>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional

Probab=95.48  E-value=0.022  Score=50.25  Aligned_cols=36  Identities=22%  Similarity=0.177  Sum_probs=32.6

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +..++|-||||+   ||||+|.-|+..|...|+||+++-
T Consensus        47 ~~~~~I~VtGTN---GKgSt~~~l~~iL~~~G~~vG~~t   82 (416)
T PRK10846         47 PAPFVFTVAGTN---GKGTTCRTLESILMAAGYRVGVYS   82 (416)
T ss_pred             cCCCEEEEECCC---ChHHHHHHHHHHHHHcCCCceEEC
Confidence            346799999996   899999999999999999999984

>TIGR00436 era GTP-binding protein Era

Probab=95.47  E-value=0.9  Score=37.57  Aligned_cols=20  Identities=30%  Similarity=0.403  Sum_probs=16.6

Q ss_pred             eEEEEeCCCCCcHHHHHHHHH
Q psy14904          8 HYFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La   28 (233)
                      .|++.|. +|+||||+...|.
T Consensus         2 ~V~liG~-pnvGKSTLln~L~   21 (270)
T TIGR00436         2 FVAILGR-PNVGKSTLLNQLH   21 (270)
T ss_pred             EEEEECC-CCCCHHHHHHHHh
Confidence            3678887 9999999988776

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PRK05748 replicative DNA helicase; Provisional

Probab=95.46  E-value=0.026  Score=50.36  Aligned_cols=34  Identities=9%  Similarity=0.158  Sum_probs=28.3

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHH-cCCeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKK-RGISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~-~G~~Vl~~d   42 (233)
                      .+.|++. +|+|||++++++|...+. .|++|++|-
T Consensus       205 livIaar-pg~GKT~~al~ia~~~a~~~g~~v~~fS  239 (448)
T PRK05748        205 LIIVAAR-PSVGKTAFALNIAQNVATKTDKNVAIFS  239 (448)
T ss_pred             eEEEEeC-CCCCchHHHHHHHHHHHHhCCCeEEEEe
Confidence            4555555 999999999999999874 599999985

>cd00046 DEXDc DEAD-like helicases superfamily

Probab=95.43  E-value=0.028  Score=40.41  Aligned_cols=34  Identities=18%  Similarity=0.252  Sum_probs=27.1

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHc--CCeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKR--GISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~--G~~Vl~~d   42 (233)
                      .+.|.+. .|+|||+++..++..+...  ..+++++-
T Consensus         2 ~~~i~~~-~G~GKT~~~~~~~~~~~~~~~~~~~lv~~   37 (144)
T cd00046           2 DVLLAAP-TGSGKTLAALLPILELLDSLKGGQVLVLA   37 (144)
T ss_pred             CEEEECC-CCCchhHHHHHHHHHHHhcccCCCEEEEc
Confidence            3556666 9999999999999999874  56777765

A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.

>PLN02759 Formate--tetrahydrofolate ligase

Probab=95.41  E-value=0.017  Score=52.27  Aligned_cols=36  Identities=14%  Similarity=0.047  Sum_probs=29.6

Q ss_pred             ceeEEE---EeCCCCCcHHHHHHHHHHHHHH-cCCeeeEE
Q psy14904          6 FLHYFI---TGTNTNIGKTIISCALLSEFKK-RGISCIGM   41 (233)
Q Consensus         6 ~~~i~i---~~~kggvGKTt~a~~La~~l~~-~G~~Vl~~   41 (233)
                      .|.|.|   +.+.-|.||||++.+|+.+|.+ .|+++.+.
T Consensus        69 gklIlVTaitPTP~GEGKTTttIGL~~aL~~~lgk~~~~~  108 (637)
T PLN02759         69 GYYVVVAGITPTPLGEGKSTTTIGLCQALGAYLDKKVVTC  108 (637)
T ss_pred             CcEEEEEecCCCCCCCCchhHHHHHHHHHHHHhCCeeEEE
Confidence            455555   4577899999999999999997 89988863

>PRK09165 replicative DNA helicase; Provisional

Probab=95.41  E-value=0.029  Score=50.69  Aligned_cols=34  Identities=18%  Similarity=0.188  Sum_probs=28.0

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHc---------------CCeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKR---------------GISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~---------------G~~Vl~~d   42 (233)
                      .+.|++. +|+|||++++++|...+++               |++|++|-
T Consensus       219 livIaar-pg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fS  267 (497)
T PRK09165        219 LIILAGR-PSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFS  267 (497)
T ss_pred             eEEEEeC-CCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEe
Confidence            4555555 9999999999999999864               78999985

>PRK13975 thymidylate kinase; Provisional

Probab=95.41  E-value=0.02  Score=44.85  Aligned_cols=26  Identities=19%  Similarity=0.175  Sum_probs=23.4

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFK   32 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~   32 (233)
                      .+.|+|.|. .|+||||++..|+..|.
T Consensus         2 ~~~I~ieG~-~GsGKtT~~~~L~~~l~   27 (196)
T PRK13975          2 NKFIVFEGI-DGSGKTTQAKLLAEKLN   27 (196)
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHHHhC
Confidence            358999999 99999999999999994

>PRK08840 replicative DNA helicase; Provisional

Probab=95.39  E-value=0.026  Score=50.54  Aligned_cols=34  Identities=15%  Similarity=0.216  Sum_probs=28.3

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHH-cCCeeeEEe
Q psy14904          9 YFITGTNTNIGKTIISCALLSEFKK-RGISCIGMK   42 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l~~-~G~~Vl~~d   42 (233)
                      +.|.+..+|+|||++++|+|...+. +|++|++|-
T Consensus       219 LiviaarPg~GKTafalnia~~~a~~~~~~v~~fS  253 (464)
T PRK08840        219 LIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFS  253 (464)
T ss_pred             eEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEe
Confidence            4455555999999999999999984 699999985

>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated

Probab=95.39  E-value=0.037  Score=43.34  Aligned_cols=33  Identities=15%  Similarity=0.126  Sum_probs=28.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904         10 FITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus        10 ~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.-+..|.||||.|+++|...+.+|++|+++.
T Consensus        25 v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQ   57 (191)
T PRK05986         25 LIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQ   57 (191)
T ss_pred             EEEECCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence            333344799999999999999999999999975

>PRK07429 phosphoribulokinase; Provisional

Probab=95.38  E-value=0.027  Score=48.11  Aligned_cols=36  Identities=17%  Similarity=0.150  Sum_probs=28.1

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .-+|.|+|. .|+||||++..|+..|...+..|...|
T Consensus         8 ~~IIgI~G~-SGSGKSTla~~L~~ll~~~~~~vi~~D   43 (327)
T PRK07429          8 PVLLGVAGD-SGCGKTTFLRGLADLLGEELVTVICTD   43 (327)
T ss_pred             CEEEEEECC-CCCCHHHHHHHHHhHhccCceEEEEec
Confidence            347888888 999999999999999866554555444

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=95.36  E-value=0.021  Score=46.02  Aligned_cols=36  Identities=17%  Similarity=-0.008  Sum_probs=29.3

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHc------CCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKR------GISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~------G~~Vl~~d   42 (233)
                      -.++.|+|. +|+|||+++..++......      +.+|++++
T Consensus        19 g~i~~i~G~-~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~   60 (235)
T cd01123          19 GSITEIFGE-FGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID   60 (235)
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence            356788888 9999999999999775544      37899988

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>PLN02200 adenylate kinase family protein

Probab=95.36  E-value=0.023  Score=46.12  Aligned_cols=24  Identities=21%  Similarity=0.355  Sum_probs=20.7

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      .+|+|+|. +|+||||+|..|+..+
T Consensus        44 ~ii~I~G~-PGSGKsT~a~~La~~~   67 (234)
T PLN02200         44 FITFVLGG-PGSGKGTQCEKIVETF   67 (234)
T ss_pred             EEEEEECC-CCCCHHHHHHHHHHHh
Confidence            46777887 9999999999998876

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=95.34  E-value=0.036  Score=40.83  Aligned_cols=30  Identities=23%  Similarity=0.420  Sum_probs=25.7

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.+.|. +|+|||+++..+|..+   ++++..+.
T Consensus         2 vlL~G~-~G~GKt~l~~~la~~~---~~~~~~i~   31 (139)
T PF07728_consen    2 VLLVGP-PGTGKTTLARELAALL---GRPVIRIN   31 (139)
T ss_dssp             EEEEES-SSSSHHHHHHHHHHHH---TCEEEEEE
T ss_pred             EEEECC-CCCCHHHHHHHHHHHh---hcceEEEE
Confidence            677888 9999999999999999   77777664

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK13695 putative NTPase; Provisional

Probab=95.34  E-value=0.039  Score=42.46  Aligned_cols=31  Identities=26%  Similarity=0.328  Sum_probs=26.9

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeee
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCI   39 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl   39 (233)
                      .|+++|. +|+||||+...++..+...|.++.
T Consensus         2 ~i~ltG~-~G~GKTTll~~i~~~l~~~G~~~~   32 (174)
T PRK13695          2 KIGITGP-PGVGKTTLVLKIAELLKEEGYKVG   32 (174)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHHHCCCeEE
Confidence            3788888 999999999999999888888764

>PLN00043 elongation factor 1-alpha; Provisional

Probab=95.34  E-value=0.17  Score=45.12  Aligned_cols=67  Identities=13%  Similarity=0.077  Sum_probs=40.7

Q ss_pred             cCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcH-------HHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904        115 NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCI-------NNALLSLEAINSRGLKLIGWVANHTQ  186 (233)
Q Consensus       115 ~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~-------~~~~~~~~~l~~~~~~i~GiVlN~~~  186 (233)
                      +++-+.+||+||.-.  +.   .+.........-+++|+++..+.+       .++......++..+++-+-+++||++
T Consensus        83 ~~~~i~liDtPGh~d--f~---~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD  156 (447)
T PLN00043         83 TKYYCTVIDAPGHRD--FI---KNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD  156 (447)
T ss_pred             CCEEEEEEECCCHHH--HH---HHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEccc
Confidence            357899999997531  10   011111112224677887776543       35666666667788876667899998

>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function

Probab=95.33  E-value=0.025  Score=48.79  Aligned_cols=34  Identities=26%  Similarity=0.421  Sum_probs=28.0

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHH--HHcCCeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEF--KKRGISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l--~~~G~~Vl~~d   42 (233)
                      +++|.|. +|+|||.++..|+..+  ...+.++.++-
T Consensus         3 v~~I~G~-aGTGKTvla~~l~~~l~~~~~~~~~~~l~   38 (352)
T PF09848_consen    3 VILITGG-AGTGKTVLALNLAKELQNSEEGKKVLYLC   38 (352)
T ss_pred             EEEEEec-CCcCHHHHHHHHHHHhhccccCCceEEEE
Confidence            5566665 9999999999999999  77788887763

It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=95.33  E-value=0.032  Score=49.67  Aligned_cols=36  Identities=19%  Similarity=0.325  Sum_probs=32.6

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.+++.|. .|+|||+++..++..+.++|.+|.++.
T Consensus       141 ~npl~L~G~-~G~GKTHLl~Ai~~~l~~~~~~v~yi~  176 (445)
T PRK12422        141 FNPIYLFGP-EGSGKTHLMQAAVHALRESGGKILYVR  176 (445)
T ss_pred             CceEEEEcC-CCCCHHHHHHHHHHHHHHcCCCEEEee
Confidence            356889987 899999999999999999999999986

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=95.33  E-value=0.037  Score=46.36  Aligned_cols=35  Identities=14%  Similarity=0.096  Sum_probs=27.3

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHc--CCeeeEE
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKR--GISCIGM   41 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~--G~~Vl~~   41 (233)
                      .-+|.|+|. .|+||||++.-|...+.+.  +.+|.++
T Consensus        62 p~IIGIaG~-~GSGKSTlar~L~~ll~~~~~~g~V~vi   98 (290)
T TIGR00554        62 PYIISIAGS-VAVGKSTTARILQALLSRWPEHRKVELI   98 (290)
T ss_pred             CEEEEEECC-CCCCHHHHHHHHHHHHhhcCCCCceEEE
Confidence            357889998 9999999998888888753  3356554

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PRK06904 replicative DNA helicase; Validated

Probab=95.31  E-value=0.027  Score=50.56  Aligned_cols=34  Identities=15%  Similarity=0.203  Sum_probs=28.1

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHH-cCCeeeEEe
Q psy14904          9 YFITGTNTNIGKTIISCALLSEFKK-RGISCIGMK   42 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l~~-~G~~Vl~~d   42 (233)
                      +.|.+..+|+|||+++.++|...+. .|++|++|-
T Consensus       223 LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fS  257 (472)
T PRK06904        223 LIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFS  257 (472)
T ss_pred             EEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEe
Confidence            4455555999999999999998875 599999985

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=95.31  E-value=0.032  Score=42.88  Aligned_cols=37  Identities=30%  Similarity=0.413  Sum_probs=24.9

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..+.++|+|. +|+|||++...+...+.+++.-+..++
T Consensus        23 ~~~~~ll~G~-~G~GKT~ll~~~~~~~~~~~~~~~~~~   59 (185)
T PF13191_consen   23 SPRNLLLTGE-SGSGKTSLLRALLDRLAERGGYVISIN   59 (185)
T ss_dssp             ----EEE-B--TTSSHHHHHHHHHHHHHHHT--EEEEE
T ss_pred             CCcEEEEECC-CCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence            4578888888 999999999999999998854455544

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=95.31  E-value=0.032  Score=45.32  Aligned_cols=33  Identities=9%  Similarity=0.029  Sum_probs=26.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHH------------cCCeeeEEe
Q psy14904          9 YFITGTNTNIGKTIISCALLSEFKK------------RGISCIGMK   42 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l~~------------~G~~Vl~~d   42 (233)
                      -++++. +|+|||+++..+|.+.+.            .+.+|+|+.
T Consensus         4 ~ll~g~-~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~   48 (239)
T cd01125           4 SALVAP-GGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLS   48 (239)
T ss_pred             eEEEcC-CCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEE
Confidence            345555 999999999999998873            456888886

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=95.30  E-value=0.029  Score=50.50  Aligned_cols=36  Identities=19%  Similarity=0.151  Sum_probs=30.4

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHc-CCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKR-GISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~-G~~Vl~~d   42 (233)
                      -.++.|+|. +|+||||+|..++..=+++ |.+++++-
T Consensus        21 g~~~Li~G~-pGsGKT~la~qfl~~g~~~~ge~~lyvs   57 (484)
T TIGR02655        21 GRSTLVSGT-SGTGKTLFSIQFLYNGIIHFDEPGVFVT   57 (484)
T ss_pred             CeEEEEEcC-CCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            457788888 9999999999998876555 99999986

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=95.26  E-value=0.024  Score=43.70  Aligned_cols=28  Identities=29%  Similarity=0.487  Sum_probs=23.2

Q ss_pred             CCCCCceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          1 MINKNFLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      |+++  +.|++.|. .|+||||++..|+..+
T Consensus         1 ~~~~--~~I~liG~-~GaGKStl~~~La~~l   28 (172)
T PRK05057          1 MAEK--RNIFLVGP-MGAGKSTIGRQLAQQL   28 (172)
T ss_pred             CCCC--CEEEEECC-CCcCHHHHHHHHHHHc
Confidence            4553  36899998 9999999999999876

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=95.24  E-value=0.42  Score=44.97  Aligned_cols=86  Identities=13%  Similarity=0.066  Sum_probs=55.1

Q ss_pred             CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhh
Q psy14904        116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANE  195 (233)
Q Consensus       116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~  195 (233)
                      +|.+-+|||||...  ++   .-..-+....+..++|.++..+--.++....+.+.+.+++.+ +++||++ .-......
T Consensus        75 ~~~iNlIDTPGHVD--Ft---~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i-~fiNKmD-R~~a~~~~  147 (697)
T COG0480          75 DYRINLIDTPGHVD--FT---IEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRI-LFVNKMD-RLGADFYL  147 (697)
T ss_pred             ceEEEEeCCCCccc--cH---HHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeE-EEEECcc-ccccChhh
Confidence            68899999998863  11   111122222236777888877655567777888888888844 7799998 33333455


Q ss_pred             hHHHHHhhcCCCc
Q psy14904        196 NYIELTKYLNVTP  208 (233)
Q Consensus       196 ~~~~l~~~~~~pv  208 (233)
                      ..+.+.+.++.++
T Consensus       148 ~~~~l~~~l~~~~  160 (697)
T COG0480         148 VVEQLKERLGANP  160 (697)
T ss_pred             hHHHHHHHhCCCc
Confidence            6667777666533

>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2

Probab=95.23  E-value=0.021  Score=44.34  Aligned_cols=27  Identities=26%  Similarity=0.210  Sum_probs=24.2

Q ss_pred             CCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904         16 TNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus        16 ggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      -|+||||.+..|+.+|...|++|....
T Consensus         5 DGsGKtT~~~~L~~~l~~~~~~~~~~~   31 (186)
T PF02223_consen    5 DGSGKTTQIRLLAEALKEKGYKVIITF   31 (186)
T ss_dssp             TTSSHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHcCCcccccC
Confidence            599999999999999999999966655

7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=95.22  E-value=0.02  Score=42.23  Aligned_cols=24  Identities=17%  Similarity=0.300  Sum_probs=19.4

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFK   32 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~   32 (233)
                      +|++.|. +|+||||++..|+..+.
T Consensus         1 lii~~G~-pgsGKSt~a~~l~~~~~   24 (143)
T PF13671_consen    1 LIILCGP-PGSGKSTLAKRLAKRLG   24 (143)
T ss_dssp             EEEEEES-TTSSHHHHHHHHHHHST
T ss_pred             CEEEECC-CCCCHHHHHHHHHHHCC
Confidence            4677777 99999999988876653

...

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=95.20  E-value=0.025  Score=43.63  Aligned_cols=25  Identities=28%  Similarity=0.276  Sum_probs=21.2

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      .++|.++|. +|+||||++..|+..+
T Consensus         2 ~~~i~l~G~-~gsGKst~a~~l~~~~   26 (175)
T cd00227           2 GRIIILNGG-SSAGKSSIARALQSVL   26 (175)
T ss_pred             CCEEEEECC-CCCCHHHHHHHHHHhh
Confidence            357888888 9999999999998776

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>TIGR00376 DNA helicase, putative

Probab=95.19  E-value=0.032  Score=51.97  Aligned_cols=35  Identities=29%  Similarity=0.520  Sum_probs=30.2

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEee
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKP   43 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp   43 (233)
                      ...|.|+ +|+|||++...+...+.++|++|+++-|
T Consensus       175 ~~lI~Gp-PGTGKT~t~~~ii~~~~~~g~~VLv~a~  209 (637)
T TIGR00376       175 LFLIHGP-PGTGKTRTLVELIRQLVKRGLRVLVTAP  209 (637)
T ss_pred             eEEEEcC-CCCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence            4556666 9999999999999999999999999753

The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=95.18  E-value=0.033  Score=50.46  Aligned_cols=36  Identities=22%  Similarity=0.216  Sum_probs=31.2

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHc-CCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKR-GISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~-G~~Vl~~d   42 (233)
                      -..+.|+|. +|+|||+++.+++..-+++ |.+|+++.
T Consensus        31 Gs~~li~G~-pGsGKT~l~~qf~~~~~~~~ge~~lyis   67 (509)
T PRK09302         31 GRPTLVSGT-AGTGKTLFALQFLVNGIKRFDEPGVFVT   67 (509)
T ss_pred             CcEEEEEeC-CCCCHHHHHHHHHHHHHHhcCCCEEEEE
Confidence            356778887 9999999999999887777 99999986

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=95.17  E-value=0.021  Score=40.30  Aligned_cols=25  Identities=28%  Similarity=0.498  Sum_probs=21.6

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHc
Q psy14904          9 YFITGTNTNIGKTIISCALLSEFKKR   34 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l~~~   34 (233)
                      |.|.|. +|+|||+++..|+..+.+.
T Consensus         1 I~i~G~-~G~GKS~l~~~l~~~l~~~   25 (107)
T PF00910_consen    1 IWIYGP-PGIGKSTLAKELAKDLLKH   25 (107)
T ss_pred             CEEECC-CCCCHHHHHHHHHHHHHHH
Confidence            456777 7999999999999999865

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PRK06321 replicative DNA helicase; Provisional

Probab=95.16  E-value=0.034  Score=49.90  Aligned_cols=34  Identities=15%  Similarity=0.202  Sum_probs=27.9

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHH-cCCeeeEEe
Q psy14904          9 YFITGTNTNIGKTIISCALLSEFKK-RGISCIGMK   42 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l~~-~G~~Vl~~d   42 (233)
                      +.|.+..+|+|||++++++|...+. .|++|++|-
T Consensus       228 LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fS  262 (472)
T PRK06321        228 LMILAARPAMGKTALALNIAENFCFQNRLPVGIFS  262 (472)
T ss_pred             EEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEe
Confidence            4444445999999999999999884 699999985

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=95.15  E-value=0.02  Score=48.00  Aligned_cols=25  Identities=12%  Similarity=0.150  Sum_probs=21.0

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      ++.|.++|. +|+||||+|..|+..+
T Consensus         2 ~~liil~G~-pGSGKSTla~~L~~~~   26 (300)
T PHA02530          2 MKIILTVGV-PGSGKSTWAREFAAKN   26 (300)
T ss_pred             cEEEEEEcC-CCCCHHHHHHHHHHHC
Confidence            456777777 9999999999998877

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=95.14  E-value=0.038  Score=46.39  Aligned_cols=24  Identities=25%  Similarity=0.505  Sum_probs=20.9

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      -+|.|+|. +|+||||+|..||..|
T Consensus        93 ~iIlI~G~-sgsGKStlA~~La~~l  116 (301)
T PRK04220         93 IIILIGGA-SGVGTSTIAFELASRL  116 (301)
T ss_pred             EEEEEECC-CCCCHHHHHHHHHHHh
Confidence            36777777 9999999999999888

>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family

Probab=95.13  E-value=0.032  Score=51.55  Aligned_cols=37  Identities=32%  Similarity=0.486  Sum_probs=32.8

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeee
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIA   45 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~   45 (233)
                      --+|.|+ +|+|||++...|+....++|..|.+|||-+
T Consensus       182 HtlV~Gt-TGsGKT~l~~~li~q~i~~g~~vi~fDpkg  218 (643)
T TIGR03754       182 HTLVLGT-TRVGKTRLAELLITQDIRRGDVVIVFDPKG  218 (643)
T ss_pred             ceEEECC-CCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence            4577788 899999999999999999999999999754

Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=95.10  E-value=0.02  Score=47.59  Aligned_cols=34  Identities=21%  Similarity=0.228  Sum_probs=27.2

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +|.|+|. .|+||||++..|+..+...|-.|...|
T Consensus         1 iigI~G~-sGsGKSTl~~~L~~ll~~~~~~vi~~D   34 (273)
T cd02026           1 IIGVAGD-SGCGKSTFLRRLTSLFGSDLVTVICLD   34 (273)
T ss_pred             CEEEECC-CCCCHHHHHHHHHHhhCCCceEEEECc
Confidence            4788888 999999999999999976665555544

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=95.09  E-value=0.028  Score=43.52  Aligned_cols=30  Identities=27%  Similarity=0.295  Sum_probs=24.2

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +|.|||. .|+||||++.-|+.    .|+.|.-.|
T Consensus         1 ii~itG~-~gsGKst~~~~l~~----~g~~~i~~D   30 (179)
T cd02022           1 IIGLTGG-IGSGKSTVAKLLKE----LGIPVIDAD   30 (179)
T ss_pred             CEEEECC-CCCCHHHHHHHHHH----CCCCEEecC
Confidence            4789998 99999999988776    588776555

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=95.09  E-value=0.022  Score=42.50  Aligned_cols=76  Identities=17%  Similarity=0.181  Sum_probs=42.5

Q ss_pred             HHHHHHHHHhhcCCCeEEE--eccCcccCccCCCCchHHHHHHhCCCEEEEEc-CCCC-cHHHHHHHHHHHHhCCCcEEE
Q psy14904        104 SHIINCYNYLSNLTDVIIL--EGIGGFSVPFHDNENSADLAEKLGLPIILVID-LKIG-CINNALLSLEAINSRGLKLIG  179 (233)
Q Consensus       104 ~~l~~~~~~l~~~~D~vlI--D~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~-~~~~-~~~~~~~~~~~l~~~~~~i~G  179 (233)
                      .++..++-..+.+.|.|++  |+.....      .-...++..+..|++=|+. .+.. +-.++..+.+.|+..|++-. 
T Consensus        51 ~~~y~aLi~ta~dad~V~ll~dat~~~~------~~pP~fa~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~i-  123 (143)
T PF10662_consen   51 PRFYHALIVTAQDADVVLLLQDATEPRS------VFPPGFASMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEI-  123 (143)
T ss_pred             HHHHHHHHHHHhhCCEEEEEecCCCCCc------cCCchhhcccCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCe-
Confidence            4455555556667886554  5432111      1122344445568887766 4433 24556777788888888744 


Q ss_pred             EEEcccC
Q psy14904        180 WVANHTQ  186 (233)
Q Consensus       180 iVlN~~~  186 (233)
                      +.++-+.
T Consensus       124 f~vS~~~  130 (143)
T PF10662_consen  124 FEVSAVT  130 (143)
T ss_pred             EEEECCC
Confidence            5555554

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=95.08  E-value=0.15  Score=40.93  Aligned_cols=28  Identities=25%  Similarity=0.198  Sum_probs=20.5

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.+.|.|. +|+||||++.+|+       .++++++
T Consensus        13 ~~~liyG~-~G~GKtt~a~~~~-------~~~~~~~   40 (220)
T TIGR01618        13 NMYLIYGK-PGTGKTSTIKYLP-------GKTLVLS   40 (220)
T ss_pred             cEEEEECC-CCCCHHHHHHhcC-------CCCEEEe
Confidence            34666666 9999999988773       3566665

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=95.08  E-value=0.043  Score=43.28  Aligned_cols=34  Identities=21%  Similarity=0.323  Sum_probs=26.3

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHc-CCeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKR-GISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~-G~~Vl~~d   42 (233)
                      .|.|+|+ +|+||||+...|+..+... +.++..+.
T Consensus         3 lilI~Gp-tGSGKTTll~~ll~~~~~~~~~~i~t~e   37 (198)
T cd01131           3 LVLVTGP-TGSGKSTTLAAMIDYINKNKTHHILTIE   37 (198)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHhhhcCCcEEEEEc
Confidence            4677777 9999999999999988754 45666553

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK13764 ATPase; Provisional

Probab=95.06  E-value=0.037  Score=50.85  Aligned_cols=35  Identities=23%  Similarity=0.245  Sum_probs=30.4

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGM   41 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~   41 (233)
                      .+.|.|+|. +|+||||+...|+..+..+|+.|..+
T Consensus       257 ~~~ILIsG~-TGSGKTTll~AL~~~i~~~~riV~Ti  291 (602)
T PRK13764        257 AEGILIAGA-PGAGKSTFAQALAEFYADMGKIVKTM  291 (602)
T ss_pred             CCEEEEECC-CCCCHHHHHHHHHHHHhhCCCEEEEE
Confidence            346888888 99999999999999999999888665

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=95.06  E-value=0.039  Score=50.64  Aligned_cols=36  Identities=28%  Similarity=0.409  Sum_probs=32.0

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHH-cCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKK-RGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~-~G~~Vl~~d   42 (233)
                      ..+|.++|. +|+||||++..|+..|.. .|.++.++|
T Consensus       392 g~~Ivl~Gl-~GSGKSTia~~La~~L~~~~g~~~~~lD  428 (568)
T PRK05537        392 GFTVFFTGL-SGAGKSTIAKALMVKLMEMRGRPVTLLD  428 (568)
T ss_pred             CeEEEEECC-CCChHHHHHHHHHHHhhhccCceEEEeC
Confidence            457888888 999999999999999987 788888887

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=95.06  E-value=0.4  Score=44.34  Aligned_cols=27  Identities=30%  Similarity=0.353  Sum_probs=21.1

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFK   32 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~   32 (233)
                      +++.+++.|+ ++|||||+--.|..+-.
T Consensus         2 ~~~~valvGN-PNvGKTtlFN~LTG~~q   28 (653)
T COG0370           2 KKLTVALVGN-PNVGKTTLFNALTGANQ   28 (653)
T ss_pred             CcceEEEecC-CCccHHHHHHHHhccCc
Confidence            3456999999 99999999877765543

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=95.05  E-value=0.038  Score=45.53  Aligned_cols=30  Identities=20%  Similarity=0.217  Sum_probs=27.5

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGIS   37 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~   37 (233)
                      -+|+|+|. .|+||||+|..|...+++.+.+
T Consensus        83 fIIgiaGs-vavGKST~ar~L~~ll~~~~~~  112 (283)
T COG1072          83 FIIGIAGS-VAVGKSTTARILQALLSRWPES  112 (283)
T ss_pred             EEEEeccC-ccccHHHHHHHHHHHHhhCCCC
Confidence            37899998 9999999999999999999876

>PRK00625 shikimate kinase; Provisional

Probab=95.04  E-value=0.027  Score=43.49  Aligned_cols=23  Identities=30%  Similarity=0.455  Sum_probs=21.1

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      .|+++|. +|+||||++..||..+
T Consensus         2 ~I~LiG~-pGsGKTT~~k~La~~l   24 (173)
T PRK00625          2 QIFLCGL-PTVGKTSFGKALAKFL   24 (173)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHh
Confidence            4899999 9999999999998887

>PLN02165 adenylate isopentenyltransferase

Probab=95.00  E-value=0.026  Score=48.02  Aligned_cols=28  Identities=32%  Similarity=0.349  Sum_probs=24.1

Q ss_pred             CCCceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          3 NKNFLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         3 ~~~~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      +.+.++|+|+|. +|+|||+++..||..+
T Consensus        40 ~~~g~iivIiGP-TGSGKStLA~~LA~~l   67 (334)
T PLN02165         40 NCKDKVVVIMGA-TGSGKSRLSVDLATRF   67 (334)
T ss_pred             CCCCCEEEEECC-CCCcHHHHHHHHHHHc
Confidence            344568999999 9999999999998887

>KOG2004|consensus

Probab=94.94  E-value=0.018  Score=53.18  Aligned_cols=35  Identities=14%  Similarity=0.144  Sum_probs=31.1

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG   40 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~   40 (233)
                      +.|+++++|+ +|||||+++..+|++|.++-.|..+
T Consensus       437 qGkIlCf~GP-PGVGKTSI~kSIA~ALnRkFfRfSv  471 (906)
T KOG2004|consen  437 QGKILCFVGP-PGVGKTSIAKSIARALNRKFFRFSV  471 (906)
T ss_pred             CCcEEEEeCC-CCCCcccHHHHHHHHhCCceEEEec
Confidence            5689999999 9999999999999999988766655

>PTZ00386 formyl tetrahydrofolate synthetase; Provisional

Probab=94.92  E-value=0.017  Score=52.17  Aligned_cols=36  Identities=11%  Similarity=-0.002  Sum_probs=29.6

Q ss_pred             ceeEEEE---eCCCCCcHHHHHHHHHHHHH-HcCCeeeEE
Q psy14904          6 FLHYFIT---GTNTNIGKTIISCALLSEFK-KRGISCIGM   41 (233)
Q Consensus         6 ~~~i~i~---~~kggvGKTt~a~~La~~l~-~~G~~Vl~~   41 (233)
                      .|.|.||   .+.-|.||||++.+|+.+|. +.|+++.+.
T Consensus        68 gklIlVTaitPTP~GEGKtTttIGL~~aL~~~lgk~~~~~  107 (625)
T PTZ00386         68 GKYVVVAGMNPTPLGEGKSTTTIGLAQSLGAHLHRKTFAC  107 (625)
T ss_pred             CcEEEEeecCCCCCCCCccchhhhhHHHHHHHhCcceEEE
Confidence            4555554   57789999999999999999 789988863

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=94.91  E-value=0.039  Score=46.18  Aligned_cols=29  Identities=28%  Similarity=0.454  Sum_probs=25.7

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCC
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGI   36 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~   36 (233)
                      ..+.+.|. +|+|||++|..+|..+.+.|+
T Consensus        59 ~~vll~G~-pGTGKT~lA~~ia~~l~~~g~   87 (284)
T TIGR02880        59 LHMSFTGN-PGTGKTTVALRMAQILHRLGY   87 (284)
T ss_pred             ceEEEEcC-CCCCHHHHHHHHHHHHHHcCC
Confidence            35788888 999999999999999998876

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>COG3911 Predicted ATPase [General function prediction only]

Probab=94.91  E-value=0.034  Score=41.64  Aligned_cols=27  Identities=22%  Similarity=0.425  Sum_probs=19.8

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCeee
Q psy14904          9 YFITGTNTNIGKTIISCALLSEFKKRGISCI   39 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl   39 (233)
                      ++|.+..+|.||||+-    .+|+++|+-+.
T Consensus        11 ~fIltGgpGaGKTtLL----~aLa~~Gfatv   37 (183)
T COG3911          11 RFILTGGPGAGKTTLL----AALARAGFATV   37 (183)
T ss_pred             EEEEeCCCCCcHHHHH----HHHHHcCceee
Confidence            5566666999999975    45677887664

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=94.89  E-value=0.072  Score=42.78  Aligned_cols=36  Identities=25%  Similarity=0.440  Sum_probs=30.7

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHc--CCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKR--GISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~--G~~Vl~~d   42 (233)
                      ...++|.|. .|+|||.+...++..+.+.  +.+|.+++
T Consensus        34 ~~~l~l~G~-~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~   71 (219)
T PF00308_consen   34 YNPLFLYGP-SGLGKTHLLQAIANEAQKQHPGKRVVYLS   71 (219)
T ss_dssp             SSEEEEEES-TTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred             CCceEEECC-CCCCHHHHHHHHHHHHHhccccccceeec
Confidence            457899888 9999999999999999874  88999987

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=94.86  E-value=0.031  Score=46.25  Aligned_cols=35  Identities=29%  Similarity=0.296  Sum_probs=28.8

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..+.|+|. .|+||||+...+...+...+.++..+.
T Consensus        81 GlilisG~-tGSGKTT~l~all~~i~~~~~~iitiE  115 (264)
T cd01129          81 GIILVTGP-TGSGKTTTLYSALSELNTPEKNIITVE  115 (264)
T ss_pred             CEEEEECC-CCCcHHHHHHHHHhhhCCCCCeEEEEC
Confidence            35677777 999999999999888877777887774

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>TIGR01393 lepA GTP-binding protein LepA

Probab=94.86  E-value=0.71  Score=42.80  Aligned_cols=25  Identities=24%  Similarity=0.340  Sum_probs=21.6

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHH
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSE   30 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~   30 (233)
                      +++.|+|.|. .++||||++-.|...
T Consensus         2 ~iRNi~IIGh-~d~GKTTL~~rLl~~   26 (595)
T TIGR01393         2 NIRNFSIIAH-IDHGKSTLADRLLEY   26 (595)
T ss_pred             CeeEEEEECC-CCCCHHHHHHHHHHH
Confidence            4788999999 999999999887763

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=94.85  E-value=0.17  Score=40.45  Aligned_cols=22  Identities=23%  Similarity=0.371  Sum_probs=18.8

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          9 YFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      |+|.|. .|+||||++-+|....
T Consensus         2 v~i~Gh-~~~GKttL~~~ll~~~   23 (219)
T cd01883           2 LVVIGH-VDAGKSTTTGHLLYLL   23 (219)
T ss_pred             EEEecC-CCCChHHHHHHHHHHh
Confidence            678888 9999999999887664

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK05636 replicative DNA helicase; Provisional

Probab=94.84  E-value=0.046  Score=49.44  Aligned_cols=34  Identities=9%  Similarity=0.253  Sum_probs=27.8

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHH-HcCCeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFK-KRGISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~-~~G~~Vl~~d   42 (233)
                      .+.|++. +|+|||++++++|...+ ++|++|++|-
T Consensus       267 Liiiaar-pg~GKT~~al~~a~~~a~~~g~~v~~fS  301 (505)
T PRK05636        267 MIIVAAR-PGVGKSTLALDFMRSASIKHNKASVIFS  301 (505)
T ss_pred             eEEEEeC-CCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence            4455555 99999999999999887 4689999985

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=94.84  E-value=0.034  Score=43.81  Aligned_cols=34  Identities=26%  Similarity=0.407  Sum_probs=22.9

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEee
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKP   43 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp   43 (233)
                      +.++++|+ +|+||||++..+...+.  +.....++|
T Consensus        16 ~~~i~aG~-~GsGKSt~~~~~~~~~~--~~~~v~i~~   49 (199)
T PF06414_consen   16 TLIIIAGQ-PGSGKSTLARQLLEEFG--GGGIVVIDA   49 (199)
T ss_dssp             EEEEEES--TTSTTHHHHHHHHHHT---TT-SEEE-G
T ss_pred             EEEEEeCC-CCCCHHHHHHHhhhhcc--CCCeEEEeh
Confidence            45555566 99999999998888776  556667773

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>PRK00023 cmk cytidylate kinase; Provisional

Probab=94.82  E-value=0.038  Score=44.57  Aligned_cols=24  Identities=21%  Similarity=0.314  Sum_probs=21.7

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      .+|+|+|+ .|+||||++..||..|
T Consensus         5 ~~i~i~g~-~gsGksti~~~la~~~   28 (225)
T PRK00023          5 IVIAIDGP-AGSGKGTVAKILAKKL   28 (225)
T ss_pred             eEEEEECC-CCCCHHHHHHHHHHHh
Confidence            47899998 9999999999999887

>PRK07004 replicative DNA helicase; Provisional

Probab=94.82  E-value=0.04  Score=49.28  Aligned_cols=34  Identities=18%  Similarity=0.210  Sum_probs=27.8

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHH-cCCeeeEEe
Q psy14904          9 YFITGTNTNIGKTIISCALLSEFKK-RGISCIGMK   42 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l~~-~G~~Vl~~d   42 (233)
                      +.|.+..+|+|||++++++|...+. .|++|++|-
T Consensus       215 liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fS  249 (460)
T PRK07004        215 LIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFS  249 (460)
T ss_pred             eEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEe
Confidence            4444555999999999999998874 699999985

>PRK13946 shikimate kinase; Provisional

Probab=94.80  E-value=0.032  Score=43.43  Aligned_cols=29  Identities=17%  Similarity=0.289  Sum_probs=24.7

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISC   38 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~V   38 (233)
                      .+.|+++|. .|+||||++..||..|   |++.
T Consensus        10 ~~~I~l~G~-~GsGKsti~~~LA~~L---g~~~   38 (184)
T PRK13946         10 KRTVVLVGL-MGAGKSTVGRRLATML---GLPF   38 (184)
T ss_pred             CCeEEEECC-CCCCHHHHHHHHHHHc---CCCe
Confidence            457999998 9999999999999988   6553

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=94.80  E-value=0.027  Score=42.08  Aligned_cols=22  Identities=23%  Similarity=0.422  Sum_probs=18.9

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          9 YFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      |.++|. +|+||||++..|+..+
T Consensus         2 i~l~G~-~GsGKST~a~~l~~~~   23 (150)
T cd02021           2 IVVMGV-SGSGKSTVGKALAERL   23 (150)
T ss_pred             EEEEcC-CCCCHHHHHHHHHhhc
Confidence            667777 9999999999998875

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=94.79  E-value=0.039  Score=45.74  Aligned_cols=38  Identities=18%  Similarity=0.275  Sum_probs=28.4

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHHHc-CC-eeeEEe
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFKKR-GI-SCIGMK   42 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~-G~-~Vl~~d   42 (233)
                      ...++|+|.|. ||+||||+|..++.....+ .+ .+..++
T Consensus        17 ~~~~~v~I~G~-~G~GKT~LA~~~~~~~~~~~~f~~v~wv~   56 (287)
T PF00931_consen   17 NEVRVVAIVGM-GGIGKTTLARQVARDLRIKNRFDGVIWVS   56 (287)
T ss_dssp             TSSEEEEEEES-TTSSHHHHHHHHHCHHHHCCCCTEEEEEE
T ss_pred             CCeEEEEEEcC-CcCCcceeeeecccccccccccccccccc
Confidence            35689999999 9999999999999885533 22 344444

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PRK04182 cytidylate kinase; Provisional

Probab=94.79  E-value=0.03  Score=42.96  Aligned_cols=23  Identities=26%  Similarity=0.356  Sum_probs=20.7

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      +|+|+|. .|+||||++..||..|
T Consensus         2 ~I~i~G~-~GsGKstia~~la~~l   24 (180)
T PRK04182          2 IITISGP-PGSGKTTVARLLAEKL   24 (180)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHc
Confidence            5888888 9999999999998876

>TIGR00017 cmk cytidylate kinase

Probab=94.77  E-value=0.037  Score=44.39  Aligned_cols=25  Identities=20%  Similarity=0.343  Sum_probs=22.3

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      ..+|+|+|+ .|+||||++..|+..|
T Consensus         2 ~~~i~i~G~-~GsGKst~~~~la~~~   26 (217)
T TIGR00017         2 AMIIAIDGP-SGAGKSTVAKAVAEKL   26 (217)
T ss_pred             ceEEEEECC-CCCCHHHHHHHHHHHh
Confidence            357999999 9999999999999877

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=94.77  E-value=0.046  Score=43.08  Aligned_cols=32  Identities=22%  Similarity=0.260  Sum_probs=25.0

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.|.|||. .|+||||++..|+..+   |..|.-.|
T Consensus         2 ~~i~itG~-~gsGKst~~~~l~~~~---g~~~i~~D   33 (195)
T PRK14730          2 RRIGLTGG-IASGKSTVGNYLAQQK---GIPILDAD   33 (195)
T ss_pred             cEEEEECC-CCCCHHHHHHHHHHhh---CCeEeeCc
Confidence            46999999 9999999998777543   87775444

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=94.76  E-value=0.032  Score=43.00  Aligned_cols=28  Identities=11%  Similarity=0.150  Sum_probs=23.1

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcC
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRG   35 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G   35 (233)
                      +.++|+|. +|+||||++-.|+..+...|
T Consensus         2 ~~~~i~G~-sGsGKttl~~~l~~~~~~~~   29 (179)
T TIGR02322         2 RLIYVVGP-SGAGKDTLLDYARARLAGDP   29 (179)
T ss_pred             cEEEEECC-CCCCHHHHHHHHHHHcCcCC
Confidence            36788888 99999999999998875443

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=94.75  E-value=0.047  Score=44.99  Aligned_cols=29  Identities=31%  Similarity=0.448  Sum_probs=24.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcC
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRG   35 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G   35 (233)
                      ...+.+.|+ +|+||||+|..+|..+.+.|
T Consensus        42 ~~~vll~Gp-pGtGKTtlA~~ia~~l~~~~   70 (261)
T TIGR02881        42 VLHMIFKGN-PGTGKTTVARILGKLFKEMN   70 (261)
T ss_pred             cceEEEEcC-CCCCHHHHHHHHHHHHHhcC
Confidence            345778888 99999999999999997655

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2

Probab=94.73  E-value=0.098  Score=40.54  Aligned_cols=37  Identities=24%  Similarity=0.293  Sum_probs=32.8

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeee
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPI   44 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~   44 (233)
                      +..+++|+ -++||||-....+..+..+|++|+++||.
T Consensus         2 ~l~~i~Gp-M~sGKS~eLi~~~~~~~~~~~~v~~~kp~   38 (176)
T PF00265_consen    2 KLEFITGP-MFSGKSTELIRRIHRYEIAGKKVLVFKPA   38 (176)
T ss_dssp             EEEEEEES-TTSSHHHHHHHHHHHHHHTT-EEEEEEES
T ss_pred             EEEEEECC-cCChhHHHHHHHHHHHHhCCCeEEEEEec
Confidence            56788888 99999999999999999999999999975

7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....

>KOG0991|consensus

Probab=94.72  E-value=0.032  Score=45.08  Aligned_cols=36  Identities=22%  Similarity=0.230  Sum_probs=29.1

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGM   41 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~   41 (233)
                      +|+.+.++|+ +|+||||....||+.|--..++=++.
T Consensus        47 nmP~liisGp-PG~GKTTsi~~LAr~LLG~~~ke~vL   82 (333)
T KOG0991|consen   47 NMPNLIISGP-PGTGKTTSILCLARELLGDSYKEAVL   82 (333)
T ss_pred             CCCceEeeCC-CCCchhhHHHHHHHHHhChhhhhHhh
Confidence            6788999999 99999999999999996443544443

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=94.67  E-value=0.042  Score=41.99  Aligned_cols=25  Identities=32%  Similarity=0.348  Sum_probs=22.0

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      ++++.|+|- +||||||++-.+...+
T Consensus         4 ~kvvvitGV-pGvGKTTVl~~~~~~l   28 (189)
T COG2019           4 RKVVVITGV-PGVGKTTVLKIALKEL   28 (189)
T ss_pred             ceEEEEEcC-CCCChHHHHHHHHHHH
Confidence            679999999 9999999997777666

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=94.65  E-value=0.037  Score=42.58  Aligned_cols=26  Identities=23%  Similarity=0.346  Sum_probs=22.7

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFK   32 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~   32 (233)
                      ++.|++.|. .|+||||+...||..|.
T Consensus         2 ~~~IvLiG~-mGaGKSTIGr~LAk~L~   27 (172)
T COG0703           2 NMNIVLIGF-MGAGKSTIGRALAKALN   27 (172)
T ss_pred             CccEEEEcC-CCCCHhHHHHHHHHHcC
Confidence            456889999 99999999999999883

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=94.65  E-value=0.051  Score=42.98  Aligned_cols=30  Identities=27%  Similarity=0.354  Sum_probs=24.2

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG   40 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~   40 (233)
                      |++|.|||. .|+||||++..|+.    .|..|.-
T Consensus         1 m~~igitG~-igsGKst~~~~l~~----~g~~vid   30 (200)
T PRK14734          1 MLRIGLTGG-IGSGKSTVADLLSS----EGFLIVD   30 (200)
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHH----CCCeEEe
Confidence            467999999 99999999988873    5876633

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=94.64  E-value=0.036  Score=41.36  Aligned_cols=23  Identities=22%  Similarity=0.356  Sum_probs=20.7

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      .|+++|. +|+||||++..|+..+
T Consensus         1 ~i~l~G~-~GsGKstla~~la~~l   23 (154)
T cd00464           1 NIVLIGM-MGAGKTTVGRLLAKAL   23 (154)
T ss_pred             CEEEEcC-CCCCHHHHHHHHHHHh
Confidence            3788888 9999999999999888

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PRK13948 shikimate kinase; Provisional

Probab=94.64  E-value=0.043  Score=42.78  Aligned_cols=26  Identities=19%  Similarity=0.216  Sum_probs=22.4

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      ....|+++|. .|+||||++..||..|
T Consensus         9 ~~~~I~LiG~-~GsGKSTvg~~La~~l   34 (182)
T PRK13948          9 PVTWVALAGF-MGTGKSRIGWELSRAL   34 (182)
T ss_pred             CCCEEEEECC-CCCCHHHHHHHHHHHc
Confidence            3456889998 9999999999998887

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=94.63  E-value=0.056  Score=45.56  Aligned_cols=35  Identities=29%  Similarity=0.385  Sum_probs=29.5

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHc--CCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKR--GISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~--G~~Vl~~d   42 (233)
                      +.|.|+|. +|+||||+...|+..+.+.  +.|+..+.
T Consensus       133 ~~ilI~G~-tGSGKTTll~al~~~i~~~~~~~ri~tiE  169 (299)
T TIGR02782       133 KNILVVGG-TGSGKTTLANALLAEIAKNDPTDRVVIIE  169 (299)
T ss_pred             CeEEEECC-CCCCHHHHHHHHHHHhhccCCCceEEEEC
Confidence            46778888 9999999999999998775  67887775

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=94.62  E-value=0.039  Score=42.86  Aligned_cols=22  Identities=23%  Similarity=0.403  Sum_probs=19.5

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHH
Q psy14904          8 HYFITGTNTNIGKTIISCALLSE   30 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~   30 (233)
                      .|.|.|+ +|+||||.|..|+..
T Consensus         2 riiilG~-pGaGK~T~A~~La~~   23 (178)
T COG0563           2 RILILGP-PGAGKSTLAKKLAKK   23 (178)
T ss_pred             eEEEECC-CCCCHHHHHHHHHHH
Confidence            4788888 999999999999887

>PRK07560 elongation factor EF-2; Reviewed

Probab=94.61  E-value=0.25  Score=46.96  Aligned_cols=65  Identities=15%  Similarity=0.124  Sum_probs=37.9

Q ss_pred             CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904        116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ  186 (233)
Q Consensus       116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~  186 (233)
                      ++-+.+|||||...  +.   ....-+....+-+++|+++..+--.++...++.+.+.+.+.+ +++||++
T Consensus        86 ~~~i~liDtPG~~d--f~---~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~i-v~iNK~D  150 (731)
T PRK07560         86 EYLINLIDTPGHVD--FG---GDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPV-LFINKVD  150 (731)
T ss_pred             cEEEEEEcCCCccC--hH---HHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeE-EEEECch
Confidence            57789999997632  11   112222222335777887765533344445555555667754 7899998

>PTZ00088 adenylate kinase 1; Provisional

Probab=94.60  E-value=0.05  Score=44.03  Aligned_cols=29  Identities=17%  Similarity=0.272  Sum_probs=23.4

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIG   40 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~   40 (233)
                      .|+|.|. +|+||||+|..||..+   |..++-
T Consensus         8 rIvl~G~-PGsGK~T~a~~La~~~---g~~~is   36 (229)
T PTZ00088          8 KIVLFGA-PGVGKGTFAEILSKKE---NLKHIN   36 (229)
T ss_pred             eEEEECC-CCCCHHHHHHHHHHHh---CCcEEE
Confidence            4888998 9999999999998876   555443

>KOG0744|consensus

Probab=94.60  E-value=0.034  Score=46.91  Aligned_cols=27  Identities=26%  Similarity=0.349  Sum_probs=23.7

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHc
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKR   34 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~   34 (233)
                      |.|.+.|+ +|+|||++|.+||+.|.-+
T Consensus       178 RliLlhGP-PGTGKTSLCKaLaQkLSIR  204 (423)
T KOG0744|consen  178 RLILLHGP-PGTGKTSLCKALAQKLSIR  204 (423)
T ss_pred             eEEEEeCC-CCCChhHHHHHHHHhheee
Confidence            57888888 9999999999999999744

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=94.56  E-value=0.073  Score=46.77  Aligned_cols=36  Identities=22%  Similarity=0.321  Sum_probs=31.1

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHc--CCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKR--GISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~--G~~Vl~~d   42 (233)
                      ...+++.|. .|+|||+++..++..+.++  |.+|.++.
T Consensus       136 ~n~l~l~G~-~G~GKThL~~ai~~~l~~~~~~~~v~yi~  173 (405)
T TIGR00362       136 YNPLFIYGG-VGLGKTHLLHAIGNEILENNPNAKVVYVS  173 (405)
T ss_pred             CCeEEEECC-CCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence            346788887 9999999999999999887  78898886

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=94.55  E-value=0.034  Score=43.30  Aligned_cols=27  Identities=22%  Similarity=0.416  Sum_probs=22.1

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCeee
Q psy14904          9 YFITGTNTNIGKTIISCALLSEFKKRGISCI   39 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl   39 (233)
                      |+|+|. +|+||||+|..|+..+   |...+
T Consensus         2 I~i~G~-pGsGKst~a~~La~~~---~~~~i   28 (194)
T cd01428           2 ILLLGP-PGSGKGTQAERLAKKY---GLPHI   28 (194)
T ss_pred             EEEECC-CCCCHHHHHHHHHHHc---CCeEE
Confidence            788888 9999999999998875   54443

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein

Probab=94.54  E-value=0.075  Score=46.46  Aligned_cols=39  Identities=33%  Similarity=0.391  Sum_probs=31.9

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIA   45 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~   45 (233)
                      .+-+.|.|+ .|+|||++-.+|...+.++|.++.++||-+
T Consensus        15 ~~~~li~G~-~GsGKT~~i~~ll~~~~~~g~~~iI~D~kg   53 (386)
T PF10412_consen   15 NRHILIIGA-TGSGKTQAIRHLLDQIRARGDRAIIYDPKG   53 (386)
T ss_dssp             GG-EEEEE--TTSSHHHHHHHHHHHHHHTT-EEEEEEETT
T ss_pred             hCcEEEECC-CCCCHHHHHHHHHHHHHHcCCEEEEEECCc
Confidence            457888998 999999999999999999999999999743

It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=94.53  E-value=0.061  Score=50.14  Aligned_cols=37  Identities=16%  Similarity=0.187  Sum_probs=32.0

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.+.|.++|. +|+||||++..|+..|..+|..+.+++
T Consensus       459 ~~~~i~~~G~-~gsGKst~a~~l~~~l~~~~~~~~~l~  495 (632)
T PRK05506        459 KPATVWFTGL-SGSGKSTIANLVERRLHALGRHTYLLD  495 (632)
T ss_pred             CcEEEEecCC-CCchHHHHHHHHHHHHHHcCCCEEEEc
Confidence            3567777777 999999999999999998898888886

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=94.48  E-value=0.042  Score=46.49  Aligned_cols=33  Identities=24%  Similarity=0.218  Sum_probs=26.3

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .++|+|+|+ +|+|||++|..||..+   +..+.-.|
T Consensus         4 ~~~i~i~Gp-tgsGKt~la~~la~~~---~~~iis~D   36 (307)
T PRK00091          4 PKVIVIVGP-TASGKTALAIELAKRL---NGEIISAD   36 (307)
T ss_pred             ceEEEEECC-CCcCHHHHHHHHHHhC---CCcEEecc
Confidence            468899998 9999999999999876   44555555

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=94.45  E-value=0.081  Score=47.21  Aligned_cols=36  Identities=19%  Similarity=0.285  Sum_probs=31.7

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHc--CCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKR--GISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~--G~~Vl~~d   42 (233)
                      ...+++.|. +|+|||+++..++..+.++  +.+|.++.
T Consensus       148 ~~~l~l~G~-~G~GKThL~~ai~~~~~~~~~~~~v~yi~  185 (450)
T PRK00149        148 YNPLFIYGG-VGLGKTHLLHAIGNYILEKNPNAKVVYVT  185 (450)
T ss_pred             CCeEEEECC-CCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence            356888888 9999999999999999887  78898886

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=94.44  E-value=0.03  Score=42.45  Aligned_cols=22  Identities=27%  Similarity=0.554  Sum_probs=18.8

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          9 YFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      |.+.|. +|+||||++..|+..+
T Consensus         1 i~l~G~-~GsGKSTla~~l~~~l   22 (163)
T TIGR01313         1 FVLMGV-AGSGKSTIASALAHRL   22 (163)
T ss_pred             CEEECC-CCCCHHHHHHHHHHhc
Confidence            456677 9999999999999887

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>CHL00181 cbbX CbbX; Provisional

Probab=94.43  E-value=0.055  Score=45.32  Aligned_cols=28  Identities=29%  Similarity=0.414  Sum_probs=24.3

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCC
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGI   36 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~   36 (233)
                      .+.+.|. +|+||||+|..+|..+...|+
T Consensus        61 ~ill~G~-pGtGKT~lAr~la~~~~~~g~   88 (287)
T CHL00181         61 HMSFTGS-PGTGKTTVALKMADILYKLGY   88 (287)
T ss_pred             eEEEECC-CCCCHHHHHHHHHHHHHHcCC
Confidence            4677777 999999999999999987765

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=94.43  E-value=0.069  Score=48.44  Aligned_cols=35  Identities=23%  Similarity=0.457  Sum_probs=31.3

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .++.|.+. +|+|||+++..++...+++|.+|+++.
T Consensus       274 ~~~li~G~-~G~GKT~l~~~~~~~~~~~g~~~~yis  308 (509)
T PRK09302        274 SIILVSGA-TGTGKTLLASKFAEAACRRGERCLLFA  308 (509)
T ss_pred             cEEEEEcC-CCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence            46777775 999999999999999999999999996

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=94.42  E-value=0.042  Score=41.77  Aligned_cols=27  Identities=22%  Similarity=0.324  Sum_probs=22.2

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISC   38 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~V   38 (233)
                      +|.|+|. .|+||||++..|+..|   |+.+
T Consensus         2 iI~i~G~-~GSGKstia~~la~~l---g~~~   28 (171)
T TIGR02173         2 IITISGP-PGSGKTTVAKILAEKL---SLKL   28 (171)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHc---CCce
Confidence            5788888 9999999999998876   5553

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=94.39  E-value=0.21  Score=39.86  Aligned_cols=35  Identities=14%  Similarity=0.237  Sum_probs=30.3

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+++.=..-|+|||.+|..++.-+-..|++|.++-
T Consensus        29 sL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvs   63 (235)
T COG2874          29 SLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVS   63 (235)
T ss_pred             eEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEE
Confidence            45555555999999999999999999999999986

>PLN02348 phosphoribulokinase

Probab=94.35  E-value=0.088  Score=45.83  Aligned_cols=28  Identities=18%  Similarity=0.134  Sum_probs=24.8

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHc
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKR   34 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~   34 (233)
                      .-+|.|+|. +|+||||++..|+..|...
T Consensus        49 p~IIGIaG~-SGSGKSTfA~~L~~~Lg~~   76 (395)
T PLN02348         49 TVVIGLAAD-SGCGKSTFMRRLTSVFGGA   76 (395)
T ss_pred             CEEEEEECC-CCCCHHHHHHHHHHHHhhc
Confidence            347889998 9999999999999999765

>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC

Probab=94.33  E-value=0.07  Score=43.20  Aligned_cols=30  Identities=27%  Similarity=0.306  Sum_probs=26.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904          9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGM   41 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~   41 (233)
                      |.|+|   +.||||+...|+..|..+|++|++-
T Consensus         2 i~~vG---~gGKTtl~~~l~~~~~~~g~~v~~T   31 (232)
T TIGR03172         2 IAFVG---AGGKTSTMFWLAAEYRKEGYRVLVT   31 (232)
T ss_pred             EEEEc---CCcHHHHHHHHHHHHHHCCCeEEEE
Confidence            55665   4899999999999999999999984

This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=94.32  E-value=0.057  Score=39.84  Aligned_cols=26  Identities=23%  Similarity=0.259  Sum_probs=22.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFK   32 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~   32 (233)
                      -.+|++.|. -|+||||++..++..|.
T Consensus        22 ~~~i~l~G~-lGaGKTtl~~~l~~~lg   47 (133)
T TIGR00150        22 GTVVLLKGD-LGAGKTTLVQGLLQGLG   47 (133)
T ss_pred             CCEEEEEcC-CCCCHHHHHHHHHHHcC
Confidence            357888888 99999999999999984

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>smart00763 AAA_PrkA PrkA AAA domain

Probab=94.32  E-value=0.061  Score=46.30  Aligned_cols=27  Identities=15%  Similarity=0.202  Sum_probs=24.7

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKK   33 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~   33 (233)
                      -+++.++|+ +|+||||++..|+..|.+
T Consensus        78 r~il~L~GP-PGsGKStla~~La~~l~~  104 (361)
T smart00763       78 KQILYLLGP-VGGGKSSLVECLKRGLEE  104 (361)
T ss_pred             CcEEEEECC-CCCCHHHHHHHHHHHHhh
Confidence            467899999 999999999999999987

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=94.31  E-value=0.072  Score=44.02  Aligned_cols=36  Identities=28%  Similarity=0.325  Sum_probs=30.6

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ...+.|+|. +|+||||+...|+..+...+.++..+.
T Consensus       127 ~~~ili~G~-tGSGKTT~l~all~~i~~~~~~iv~iE  162 (270)
T PF00437_consen  127 RGNILISGP-TGSGKTTLLNALLEEIPPEDERIVTIE  162 (270)
T ss_dssp             TEEEEEEES-TTSSHHHHHHHHHHHCHTTTSEEEEEE
T ss_pred             ceEEEEECC-CccccchHHHHHhhhccccccceEEec
Confidence            356778877 999999999999998888878888875

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily

Probab=94.26  E-value=0.076  Score=49.41  Aligned_cols=38  Identities=32%  Similarity=0.444  Sum_probs=33.4

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeee
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIA   45 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~   45 (233)
                      .-.+|.|+ +|+|||++...|+..+.++|..|.++||-+
T Consensus       177 ~H~lv~G~-TGsGKT~l~~~l~~q~i~~g~~viv~DpKg  214 (634)
T TIGR03743       177 GHTLVLGT-TGVGKTRLAELLITQDIRRGDVVIVIDPKG  214 (634)
T ss_pred             CcEEEECC-CCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence            45778888 899999999999999999999999999764

Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=94.25  E-value=0.052  Score=43.03  Aligned_cols=31  Identities=19%  Similarity=0.258  Sum_probs=25.2

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG   40 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~   40 (233)
                      ..+|+|.|+ =|+||||+|..||..|.   -++.+
T Consensus         4 ~~~IvI~G~-IG~GKSTLa~~La~~l~---~~~~~   34 (216)
T COG1428           4 AMVIVIEGM-IGAGKSTLAQALAEHLG---FKVFY   34 (216)
T ss_pred             ccEEEEecc-cccCHHHHHHHHHHHhC---Cceee
Confidence            458999999 99999999999998884   45544

>KOG3062|consensus

Probab=94.23  E-value=0.084  Score=42.32  Aligned_cols=36  Identities=25%  Similarity=0.266  Sum_probs=30.9

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCC--eeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGI--SCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~--~Vl~~d   42 (233)
                      |+-+.|+|. +-+||||.|..|..+|+.+|.  .|.++|
T Consensus         1 MpLVvi~G~-P~SGKstrA~~L~~~l~~~~~K~~v~ii~   38 (281)
T KOG3062|consen    1 MPLVVICGL-PCSGKSTRAVELREALKERGTKQSVRIID   38 (281)
T ss_pred             CCeEEEeCC-CCCCchhHHHHHHHHHHhhcccceEEEec
Confidence            566788888 999999999999999999994  577776

>PRK13976 thymidylate kinase; Provisional

Probab=94.20  E-value=0.098  Score=41.72  Aligned_cols=34  Identities=21%  Similarity=0.170  Sum_probs=28.5

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHc-C-CeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKR-G-ISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~-G-~~Vl~~d   42 (233)
                      -|+|=|. -|+||||.+..|+..|..+ | ++|.+..
T Consensus         2 fIv~EGi-DGsGKsTq~~~L~~~L~~~~g~~~v~~~~   37 (209)
T PRK13976          2 FITFEGI-DGSGKTTQSRLLAEYLSDIYGENNVVLTR   37 (209)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHHHhcCCcceEEee
Confidence            4677777 8999999999999999987 6 5887764

>PRK14532 adenylate kinase; Provisional

Probab=94.19  E-value=0.045  Score=42.59  Aligned_cols=22  Identities=23%  Similarity=0.268  Sum_probs=19.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          9 YFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      |++.|. +|+||||++..||..+
T Consensus         3 i~~~G~-pGsGKsT~a~~la~~~   24 (188)
T PRK14532          3 LILFGP-PAAGKGTQAKRLVEER   24 (188)
T ss_pred             EEEECC-CCCCHHHHHHHHHHHc
Confidence            778888 9999999999998755

>TIGR02746 TraC-F-type type-IV secretion system protein TraC

Probab=94.17  E-value=0.077  Score=50.80  Aligned_cols=36  Identities=17%  Similarity=0.181  Sum_probs=32.7

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeee
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPI   44 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~   44 (233)
                      .++|+|+ +|+|||++...|+..+...|.+|.++||-
T Consensus       432 n~~I~G~-tGsGKS~~~~~l~~~~~~~g~~v~iiD~~  467 (797)
T TIGR02746       432 NIAVVGG-SGAGKSFFMQELIVDNLSRGGKVWVIDVG  467 (797)
T ss_pred             ceEEEcC-CCCCHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            5788888 99999999999999998899999999974

The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.

>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated

Probab=94.16  E-value=0.12  Score=40.07  Aligned_cols=34  Identities=9%  Similarity=-0.061  Sum_probs=28.5

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +...-+..|-||||.|.++|..-+-+|+||+++.
T Consensus        23 li~VYtGdGKGKTTAAlGlalRAaG~G~rV~iiQ   56 (178)
T PRK07414         23 LVQVFTSSQRNFFTSVMAQALRIAGQGTPVLIVQ   56 (178)
T ss_pred             EEEEEeCCCCCchHHHHHHHHHHhcCCCEEEEEE
Confidence            3334445699999999999999999999999975

>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]

Probab=94.15  E-value=0.024  Score=49.54  Aligned_cols=35  Identities=26%  Similarity=0.218  Sum_probs=29.3

Q ss_pred             ceeEEEE---eCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904          6 FLHYFIT---GTNTNIGKTIISCALLSEFKKRGISCIG   40 (233)
Q Consensus         6 ~~~i~i~---~~kggvGKTt~a~~La~~l~~~G~~Vl~   40 (233)
                      .|-|.||   .+--|.||||++.+|+.+|.+.|+++.+
T Consensus        52 gKlILVTaitPTPaGEGKsTttiGL~~al~~lgK~~i~   89 (554)
T COG2759          52 GKLILVTAITPTPAGEGKTTTTIGLVDALNKLGKKAII   89 (554)
T ss_pred             ceEEEEEecCCCCCCCCcceeeehHHHHHHhcCchheE
Confidence            4555555   4667999999999999999999998876

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=94.13  E-value=0.094  Score=46.70  Aligned_cols=36  Identities=17%  Similarity=0.269  Sum_probs=31.0

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHc--CCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKR--GISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~--G~~Vl~~d   42 (233)
                      .+.+++.|. +|+|||+++..++..+.++  +.+|.++.
T Consensus       130 ~n~l~lyG~-~G~GKTHLl~ai~~~l~~~~~~~~v~yi~  167 (440)
T PRK14088        130 YNPLFIYGG-VGLGKTHLLQSIGNYVVQNEPDLRVMYIT  167 (440)
T ss_pred             CCeEEEEcC-CCCcHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence            346889998 9999999999999999876  67899986

>PRK14738 gmk guanylate kinase; Provisional

Probab=94.07  E-value=0.067  Score=42.48  Aligned_cols=32  Identities=19%  Similarity=0.285  Sum_probs=22.6

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGM   41 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~   41 (233)
                      +.+.|.|+|. +|+||||++..|.    +.+.++.+.
T Consensus        12 ~~~~ivi~Gp-sG~GK~tl~~~L~----~~~~~~~~~   43 (206)
T PRK14738         12 KPLLVVISGP-SGVGKDAVLARMR----ERKLPFHFV   43 (206)
T ss_pred             CCeEEEEECc-CCCCHHHHHHHHH----hcCCccccc
Confidence            4567888888 9999999886664    445555443

>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies

Probab=94.07  E-value=0.079  Score=41.84  Aligned_cols=36  Identities=25%  Similarity=0.383  Sum_probs=28.3

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHH----cCCeeeEEeee
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKK----RGISCIGMKPI   44 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~----~G~~Vl~~dp~   44 (233)
                      .+.|.|. +|+|||++..+++..++.    ...++.++||-
T Consensus        40 h~li~G~-tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k   79 (205)
T PF01580_consen   40 HLLIAGA-TGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPK   79 (205)
T ss_dssp             SEEEE---TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TT
T ss_pred             eEEEEcC-CCCCccHHHHHHHHHHHHHhcCCccEEEEEcCC
Confidence            5788888 899999999999999998    56788888854

The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []

Probab=94.05  E-value=0.099  Score=41.52  Aligned_cols=38  Identities=26%  Similarity=0.312  Sum_probs=26.9

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCC--eeeEEeeee
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGI--SCIGMKPIA   45 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~--~Vl~~dp~~   45 (233)
                      +.+++.|+ .|+|||++|+..|..+-..|.  |+.+.+|..
T Consensus        20 ~~v~~~G~-AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v   59 (205)
T PF02562_consen   20 DLVIVNGP-AGTGKTFLALAAALELVKEGEYDKIIITRPPV   59 (205)
T ss_dssp             SEEEEE---TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S-
T ss_pred             CeEEEECC-CCCcHHHHHHHHHHHHHHhCCCcEEEEEecCC
Confidence            44555555 999999999999987776654  888888654

; GO: 0005524 ATP binding; PDB: 3B85_A.

>PRK13700 conjugal transfer protein TraD; Provisional

Probab=94.04  E-value=0.088  Score=49.20  Aligned_cols=40  Identities=18%  Similarity=0.250  Sum_probs=36.0

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeee
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIA   45 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~   45 (233)
                      ..+-++|+|+ .|+|||++-.+|.....++|.|..++||-+
T Consensus       184 E~~H~li~Gt-tGSGKS~~i~~LL~~ir~RGdrAIIyD~~G  223 (732)
T PRK13700        184 EIQNFCLHGT-VGAGKSEVIRRLANYARQRGDMVVIYDRSG  223 (732)
T ss_pred             hhcceEEeCC-CCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence            4567899999 999999999999999999999999999754

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=93.99  E-value=0.11  Score=41.33  Aligned_cols=32  Identities=19%  Similarity=0.148  Sum_probs=24.8

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ...|.|||. .|+||||++.-|..    .|..|.-.|
T Consensus         5 ~~~igitG~-igsGKSt~~~~l~~----~g~~v~d~D   36 (208)
T PRK14731          5 PFLVGVTGG-IGSGKSTVCRFLAE----MGCELFEAD   36 (208)
T ss_pred             CEEEEEECC-CCCCHHHHHHHHHH----CCCeEEecc
Confidence            356899998 99999999876654    588875554

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=93.98  E-value=0.41  Score=42.38  Aligned_cols=30  Identities=27%  Similarity=0.328  Sum_probs=24.3

Q ss_pred             CCCCCceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          1 MINKNFLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      |-+++.-.|+|.|. .++||||+.-.|....
T Consensus         1 ~~~k~~~~v~iiGh-~d~GKSTL~~~Ll~~~   30 (425)
T PRK12317          1 AKEKPHLNLAVIGH-VDHGKSTLVGRLLYET   30 (425)
T ss_pred             CCCCCEEEEEEECC-CCCChHHHHHHHHHHc
Confidence            45666667899998 9999999998887654

>PLN02422 dephospho-CoA kinase

Probab=93.98  E-value=0.082  Score=42.83  Aligned_cols=32  Identities=22%  Similarity=0.272  Sum_probs=25.0

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      |+.|.|||. .|+||||++.-|+    +.|..|.-.|
T Consensus         1 M~~igltG~-igsGKstv~~~l~----~~g~~~idaD   32 (232)
T PLN02422          1 MRVVGLTGG-IASGKSTVSNLFK----SSGIPVVDAD   32 (232)
T ss_pred             CeEEEEECC-CCCCHHHHHHHHH----HCCCeEEehh
Confidence            357999998 9999999997776    4688774433

>PRK00279 adk adenylate kinase; Reviewed

Probab=93.91  E-value=0.066  Score=42.71  Aligned_cols=23  Identities=13%  Similarity=0.289  Sum_probs=19.9

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      .|.|.|. +|+||||+|..||..+
T Consensus         2 ~I~v~G~-pGsGKsT~a~~la~~~   24 (215)
T PRK00279          2 RLILLGP-PGAGKGTQAKFIAEKY   24 (215)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHh
Confidence            3788888 9999999999888776

>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2

Probab=93.91  E-value=0.14  Score=41.21  Aligned_cols=34  Identities=18%  Similarity=0.185  Sum_probs=29.5

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +|+++|- |+.|||++|..|+++|.-.|+++-+|.
T Consensus        14 ~ivmVGL-PArGKs~ia~kl~ryL~w~g~~~~vFn   47 (222)
T PF01591_consen   14 VIVMVGL-PARGKSYIARKLCRYLNWLGVKTKVFN   47 (222)
T ss_dssp             EEEEESS-TTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHhhcCCCcceee
Confidence            6777787 999999999999999999999999986

7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=93.90  E-value=0.062  Score=47.17  Aligned_cols=25  Identities=24%  Similarity=0.264  Sum_probs=22.3

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      ++.|+|+|. .|+||||++..|+..+
T Consensus       219 ~~~IvI~G~-~gsGKTTL~~~La~~~  243 (399)
T PRK08099        219 VRTVAILGG-ESSGKSTLVNKLANIF  243 (399)
T ss_pred             CcEEEEEcC-CCCCHHHHHHHHHHHh
Confidence            578999999 9999999999988765

>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase

Probab=93.87  E-value=0.085  Score=46.23  Aligned_cols=35  Identities=23%  Similarity=0.206  Sum_probs=31.8

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.++|.||||+   ||||+|.-|+..|.+.|+||+++-
T Consensus        17 ~~~vI~VtGTN---GKgSt~~~l~~iL~~~g~~vg~~t   51 (397)
T TIGR01499        17 LYPVIHVAGTN---GKGSTCAFLESILRAAGYKVGLFT   51 (397)
T ss_pred             hCCEEEEeCCC---ChHHHHHHHHHHHHHcCCCeeEEe
Confidence            46899999994   799999999999999999999975

A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog.

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=93.85  E-value=0.74  Score=38.61  Aligned_cols=65  Identities=14%  Similarity=0.081  Sum_probs=34.8

Q ss_pred             CCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904        117 TDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ  186 (233)
Q Consensus       117 ~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~  186 (233)
                      --|--||||+.-.. +.+.   ..=|+.-| ..|+|+.+..+..-++...+-..++.|++-+-+.+||++
T Consensus        75 rhyahVDcPGHaDY-vKNM---ItgAaqmD-gAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~D  139 (394)
T COG0050          75 RHYAHVDCPGHADY-VKNM---ITGAAQMD-GAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVD  139 (394)
T ss_pred             ceEEeccCCChHHH-HHHH---hhhHHhcC-ccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEeccc
Confidence            34677899876321 1111   11122223 345555555443333333333346679988888999998

>PRK10536 hypothetical protein; Provisional

Probab=93.84  E-value=0.11  Score=42.73  Aligned_cols=37  Identities=32%  Similarity=0.456  Sum_probs=26.5

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHH-HHHcCC-eeeEEeee
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSE-FKKRGI-SCIGMKPI   44 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~-l~~~G~-~Vl~~dp~   44 (233)
                      ..++++|. .|+|||++|..++.. +....+ ++.+.+|.
T Consensus        75 ~lV~i~G~-aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~  113 (262)
T PRK10536         75 QLIFATGE-AGCGKTWISAAKAAEALIHKDVDRIIVTRPV  113 (262)
T ss_pred             CeEEEECC-CCCCHHHHHHHHHHHHHhcCCeeEEEEeCCC
Confidence            46677777 999999999999995 433334 45556654

>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetase

Probab=93.82  E-value=0.095  Score=46.91  Aligned_cols=35  Identities=20%  Similarity=0.118  Sum_probs=30.8

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+++|.|||+   .|||||+.-|+..|...|++|.++.
T Consensus        84 ~~~vI~ITGT---nGKTTT~~ml~~iL~~~g~~~~~~~  118 (464)
T TIGR01085        84 KLKVIGVTGT---NGKTTTTSLIAQLLRLLGKKTGLIG  118 (464)
T ss_pred             ccEEEEEECC---CCcHhHHHHHHHHHHHcCCCEEEEC
Confidence            4688999987   7999999999999999999987754

A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown.

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=93.82  E-value=0.12  Score=40.95  Aligned_cols=32  Identities=19%  Similarity=0.221  Sum_probs=24.9

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+|.+||. .|+||||++..|+..+   |..|.-.|
T Consensus         7 ~~IglTG~-iGsGKStv~~~l~~~l---g~~vidaD   38 (204)
T PRK14733          7 YPIGITGG-IASGKSTATRILKEKL---NLNVVCAD   38 (204)
T ss_pred             EEEEEECC-CCCCHHHHHHHHHHHc---CCeEEecc
Confidence            46999999 9999999997776533   88765544

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=93.81  E-value=0.05  Score=44.31  Aligned_cols=31  Identities=23%  Similarity=0.393  Sum_probs=23.3

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIG   40 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~   40 (233)
                      +.|.+.|.-+||||||+|.-||..|   |.+.++
T Consensus        89 p~IILIGGasGVGkStIA~ElA~rL---gI~~vi  119 (299)
T COG2074          89 PLIILIGGASGVGKSTIAGELARRL---GIRSVI  119 (299)
T ss_pred             CeEEEecCCCCCChhHHHHHHHHHc---CCceee
Confidence            3555666669999999999999877   665444

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=93.80  E-value=0.11  Score=43.56  Aligned_cols=31  Identities=26%  Similarity=0.372  Sum_probs=23.9

Q ss_pred             CCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904          3 NKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISC   38 (233)
Q Consensus         3 ~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~V   38 (233)
                      ..+++.|.|+|. +|+||||++..|.    ..|+-+
T Consensus         3 ~~~~~~i~i~G~-~GsGKtt~~~~l~----~~g~~~   33 (288)
T PRK05416          3 AAPMRLVIVTGL-SGAGKSVALRALE----DLGYYC   33 (288)
T ss_pred             CCCceEEEEECC-CCCcHHHHHHHHH----HcCCeE
Confidence            446778888888 9999999998884    456533

>TIGR01351 adk adenylate kinases

Probab=93.79  E-value=0.061  Score=42.76  Aligned_cols=22  Identities=14%  Similarity=0.289  Sum_probs=19.3

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          9 YFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      |+|.|. +|+||||+|..||..+
T Consensus         2 I~i~G~-pGsGKsT~a~~La~~~   23 (210)
T TIGR01351         2 LVLLGP-PGSGKGTQAKRIAEKY   23 (210)
T ss_pred             EEEECC-CCCCHHHHHHHHHHHc
Confidence            778888 9999999999998765

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=93.75  E-value=0.11  Score=42.86  Aligned_cols=32  Identities=13%  Similarity=0.202  Sum_probs=25.8

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.+.+.|. +|+|||+++..||..+   |.++..+.
T Consensus        22 ~~vLL~G~-~GtGKT~lA~~la~~l---g~~~~~i~   53 (262)
T TIGR02640        22 YPVHLRGP-AGTGKTTLAMHVARKR---DRPVMLIN   53 (262)
T ss_pred             CeEEEEcC-CCCCHHHHHHHHHHHh---CCCEEEEe
Confidence            35778888 9999999999999754   77777764

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>COG1110 Reverse gyrase [DNA replication, recombination, and repair]

Probab=93.73  E-value=0.1  Score=50.10  Aligned_cols=38  Identities=21%  Similarity=0.230  Sum_probs=34.4

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPI   44 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~   44 (233)
                      .+.++|..+ +|+||||.-+-.+.++|.+|+|+.++=|.
T Consensus        97 g~SFaiiAP-TGvGKTTfg~~~sl~~a~kgkr~yii~PT  134 (1187)
T COG1110          97 GKSFAIIAP-TGVGKTTFGLLMSLYLAKKGKRVYIIVPT  134 (1187)
T ss_pred             CCceEEEcC-CCCchhHHHHHHHHHHHhcCCeEEEEecC
Confidence            467888888 89999999999999999999999998764

>KOG0462|consensus

Probab=93.72  E-value=0.41  Score=43.27  Aligned_cols=85  Identities=14%  Similarity=0.140  Sum_probs=53.6

Q ss_pred             CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhh
Q psy14904        116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANE  195 (233)
Q Consensus       116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~  195 (233)
                      .|-+=+|||||...  +..  -.....+.+ ..+|+|+++.-|-..++.......-+.++.++ .|+||++-| ....+.
T Consensus       124 ~ylLNLIDTPGHvD--Fs~--EVsRslaac-~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iI-pVlNKIDlp-~adpe~  196 (650)
T KOG0462|consen  124 SYLLNLIDTPGHVD--FSG--EVSRSLAAC-DGALLVVDASQGVQAQTVANFYLAFEAGLAII-PVLNKIDLP-SADPER  196 (650)
T ss_pred             ceEEEeecCCCccc--ccc--eehehhhhc-CceEEEEEcCcCchHHHHHHHHHHHHcCCeEE-EeeeccCCC-CCCHHH
Confidence            37778999998863  211  112222223 36899999988777777666666667788855 679999833 233345


Q ss_pred             hHHHHHhhcCCC
Q psy14904        196 NYIELTKYLNVT  207 (233)
Q Consensus       196 ~~~~l~~~~~~p  207 (233)
                      ....+++.|++|
T Consensus       197 V~~q~~~lF~~~  208 (650)
T KOG0462|consen  197 VENQLFELFDIP  208 (650)
T ss_pred             HHHHHHHHhcCC
Confidence            555666665543

>PRK08356 hypothetical protein; Provisional

Probab=93.68  E-value=0.087  Score=41.35  Aligned_cols=30  Identities=17%  Similarity=0.246  Sum_probs=22.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG   40 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~   40 (233)
                      ...|.|+|. +|+||||+|-.|.    +.|..++.
T Consensus         5 ~~~i~~~G~-~gsGK~t~a~~l~----~~g~~~is   34 (195)
T PRK08356          5 KMIVGVVGK-IAAGKTTVAKFFE----EKGFCRVS   34 (195)
T ss_pred             cEEEEEECC-CCCCHHHHHHHHH----HCCCcEEe
Confidence            446888887 9999999998884    35766543

>PLN02674 adenylate kinase

Probab=93.67  E-value=0.084  Score=43.12  Aligned_cols=25  Identities=20%  Similarity=0.228  Sum_probs=21.0

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      .+.|+|.|. +|+||||.|..||..+
T Consensus        31 ~~~i~l~G~-PGsGKgT~a~~La~~~   55 (244)
T PLN02674         31 DKRLILIGP-PGSGKGTQSPIIKDEY   55 (244)
T ss_pred             CceEEEECC-CCCCHHHHHHHHHHHc
Confidence            356888888 9999999999888766

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=93.64  E-value=0.082  Score=45.46  Aligned_cols=36  Identities=19%  Similarity=0.231  Sum_probs=28.1

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHc-CCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKR-GISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~-G~~Vl~~d   42 (233)
                      ...|.|+|. +|+||||+...|...+.+. +.++..+.
T Consensus       122 ~g~ili~G~-tGSGKTT~l~al~~~i~~~~~~~i~tiE  158 (343)
T TIGR01420       122 RGLILVTGP-TGSGKSTTLASMIDYINKNAAGHIITIE  158 (343)
T ss_pred             CcEEEEECC-CCCCHHHHHHHHHHhhCcCCCCEEEEEc
Confidence            456788888 9999999999999888753 55676653

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PRK12740 elongation factor G; Reviewed

Probab=93.62  E-value=0.44  Score=44.79  Aligned_cols=93  Identities=12%  Similarity=0.064  Sum_probs=55.6

Q ss_pred             cCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhh
Q psy14904        115 NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFAN  194 (233)
Q Consensus       115 ~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~  194 (233)
                      .++++.+|||||...  +..  ......... .-+++|.++..+-..+....++.++..+.+++ +|+||++ .......
T Consensus        58 ~~~~i~liDtPG~~~--~~~--~~~~~l~~a-D~vllvvd~~~~~~~~~~~~~~~~~~~~~p~i-iv~NK~D-~~~~~~~  130 (668)
T PRK12740         58 KGHKINLIDTPGHVD--FTG--EVERALRVL-DGAVVVVCAVGGVEPQTETVWRQAEKYGVPRI-IFVNKMD-RAGADFF  130 (668)
T ss_pred             CCEEEEEEECCCcHH--HHH--HHHHHHHHh-CeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEE-EEEECCC-CCCCCHH
Confidence            368999999987631  100  111122222 35777777765433334445555666777855 6899998 3333345


Q ss_pred             hhHHHHHhhcCCCce-EecCC
Q psy14904        195 ENYIELTKYLNVTPL-GRIPY  214 (233)
Q Consensus       195 ~~~~~l~~~~~~pvl-g~IP~  214 (233)
                      ...+.+++.++.+++ -.+|.
T Consensus       131 ~~~~~l~~~l~~~~~~~~~p~  151 (668)
T PRK12740        131 RVLAQLQEKLGAPVVPLQLPI  151 (668)
T ss_pred             HHHHHHHHHHCCCceeEEecc
Confidence            677788887887665 34664

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=93.58  E-value=0.86  Score=40.23  Aligned_cols=48  Identities=17%  Similarity=0.097  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904        160 INNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL  209 (233)
Q Consensus       160 ~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl  209 (233)
                      ...-...++.+++.+.+++ +|+|+.+ |.........+.+++.+++|++
T Consensus       166 ~~aEe~~i~eLk~~~kPfi-ivlN~~d-p~~~et~~l~~~l~eky~vpvl  213 (492)
T TIGR02836       166 VEAEERVIEELKELNKPFI-ILLNSTH-PYHPETEALRQELEEKYDVPVL  213 (492)
T ss_pred             hHHHHHHHHHHHhcCCCEE-EEEECcC-CCCchhHHHHHHHHHHhCCceE
Confidence            3334567888888999966 6799998 6543444455677777888876

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.54  E-value=0.12  Score=46.34  Aligned_cols=34  Identities=26%  Similarity=0.276  Sum_probs=29.8

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGM   41 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~   41 (233)
                      ++++|+|||+   .|||||+.-|++.|...|+++...
T Consensus       121 ~~~~I~VTGT---nGKTTTt~mi~~iL~~~g~~~~~~  154 (480)
T PRK01438        121 PAPWLAVTGT---NGKTTTVQMLASMLRAAGLRAAAV  154 (480)
T ss_pred             CCCEEEEeCC---CcHHHHHHHHHHHHHHcCCCeEEE
Confidence            4578999988   799999999999999999887654

>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA

Probab=93.49  E-value=0.13  Score=48.89  Aligned_cols=37  Identities=19%  Similarity=0.218  Sum_probs=31.2

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeee
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPI   44 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~   44 (233)
                      ++..|+|. +|+||||+...+...+.+.|++|.++=|.
T Consensus       369 ~~~il~G~-aGTGKTtll~~i~~~~~~~g~~V~~~ApT  405 (744)
T TIGR02768       369 DIAVVVGR-AGTGKSTMLKAAREAWEAAGYRVIGAALS  405 (744)
T ss_pred             CEEEEEec-CCCCHHHHHHHHHHHHHhCCCeEEEEeCc
Confidence            45666666 99999999999999999999999987543

This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.

>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional

Probab=93.47  E-value=0.1  Score=46.64  Aligned_cols=34  Identities=24%  Similarity=0.167  Sum_probs=30.5

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGM   41 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~   41 (233)
                      .+++|.|||+   .|||||+.-|+..|.+.|+++..+
T Consensus        94 ~~~vI~ITGT---nGKTTT~~~l~~iL~~~g~~~~~~  127 (460)
T PRK00139         94 KLKLIGVTGT---NGKTTTAYLLAQILRLLGEKTALI  127 (460)
T ss_pred             ccEEEEEECC---CCchhHHHHHHHHHHHcCCCEEEE
Confidence            4678999987   799999999999999999998875

>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional

Probab=93.47  E-value=0.1  Score=50.25  Aligned_cols=36  Identities=19%  Similarity=0.170  Sum_probs=32.7

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeee
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPI   44 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~   44 (233)
                      ..+|.|+ +|+|||+++..|+..+.+.|.+|.++||-
T Consensus       451 N~~I~G~-sGsGKS~l~k~l~~~~~~~g~~viiiD~~  486 (844)
T PRK13721        451 NMAVCGT-SGAGKTGLIQPLIRSVLDSGGFAVVFDMG  486 (844)
T ss_pred             cEEEEcC-CCCCHHHHHHHHHHhhhccCCEEEEEeCC
Confidence            5888888 99999999999999988889999999964

>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain

Probab=93.46  E-value=0.13  Score=45.30  Aligned_cols=38  Identities=37%  Similarity=0.445  Sum_probs=33.1

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeee
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIA   45 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~   45 (233)
                      +.++|.+. +|+|||++-.+|...+.++|.++.++||-+
T Consensus        43 ~h~~i~g~-tGsGKt~~i~~l~~~~~~~~~~~vi~D~kg   80 (410)
T cd01127          43 AHTMIIGT-TGTGKTTQIRELLASIRARGDRAIIYDPNG   80 (410)
T ss_pred             ccEEEEcC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            46788888 899999998888888888999999999865

TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.

>PRK07773 replicative DNA helicase; Validated

Probab=93.46  E-value=0.13  Score=49.93  Aligned_cols=34  Identities=12%  Similarity=0.192  Sum_probs=28.5

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHc-CCeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKR-GISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~-G~~Vl~~d   42 (233)
                      .+.|++. +|+|||+++.++|...+.+ |++|++|-
T Consensus       219 livIagr-Pg~GKT~fal~ia~~~a~~~~~~V~~fS  253 (886)
T PRK07773        219 LIIVAAR-PSMGKTTFGLDFARNCAIRHRLAVAIFS  253 (886)
T ss_pred             EEEEEeC-CCCCcHHHHHHHHHHHHHhcCCeEEEEe
Confidence            4555555 9999999999999999865 88999985

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=93.41  E-value=0.082  Score=44.97  Aligned_cols=33  Identities=9%  Similarity=0.052  Sum_probs=26.8

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIG   40 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~   40 (233)
                      +.|.+.|. +|+||||++..||..|.....+|-+
T Consensus        65 ~~ilL~G~-pGtGKTtla~~lA~~l~~~~~rV~~   97 (327)
T TIGR01650        65 RRVMVQGY-HGTGKSTHIEQIAARLNWPCVRVNL   97 (327)
T ss_pred             CcEEEEeC-CCChHHHHHHHHHHHHCCCeEEEEe
Confidence            46899999 9999999999999999655444443

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>PLN02748 tRNA dimethylallyltransferase

Probab=93.39  E-value=0.086  Score=47.11  Aligned_cols=26  Identities=27%  Similarity=0.372  Sum_probs=23.0

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      +-++|+|+|+ +|+|||+++..||..+
T Consensus        21 ~~~~i~i~Gp-tgsGKs~la~~la~~~   46 (468)
T PLN02748         21 KAKVVVVMGP-TGSGKSKLAVDLASHF   46 (468)
T ss_pred             CCCEEEEECC-CCCCHHHHHHHHHHhc
Confidence            3568999998 9999999999999887

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.39  E-value=0.13  Score=45.93  Aligned_cols=33  Identities=21%  Similarity=0.219  Sum_probs=28.9

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG   40 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~   40 (233)
                      +.++|+|||+   .|||||+.-|++.|...|+++..
T Consensus       113 ~~~vI~VTGT---~GKTTTt~ll~~iL~~~g~~~~~  145 (460)
T PRK01390        113 DAPFIAITGT---NGKSTTTALIAHILREAGRDVQM  145 (460)
T ss_pred             CCCEEEEeCC---CcHHHHHHHHHHHHHhcCCCeEE
Confidence            4578999987   79999999999999999988755

>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family

Probab=93.38  E-value=0.11  Score=49.56  Aligned_cols=37  Identities=30%  Similarity=0.331  Sum_probs=32.5

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCC-eeeEEeee
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGI-SCIGMKPI   44 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~-~Vl~~dp~   44 (233)
                      ...+|+|+ +|+|||+++..|+..+.+.|. +|.++||.
T Consensus       435 ~n~~I~G~-tGsGKS~~~~~l~~~~~~~~~~~v~iiD~~  472 (785)
T TIGR00929       435 GHTLIFGP-TGSGKTTLLNFLLAQMQKYGGMTIFAFDKD  472 (785)
T ss_pred             ceEEEECC-CCCCHHHHHHHHHHHhhccCCCeEEEEeCC
Confidence            45788888 999999999999988888877 99999975

Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=93.36  E-value=0.085  Score=49.88  Aligned_cols=24  Identities=29%  Similarity=0.408  Sum_probs=22.4

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      .+|+|.|+ +|+||||++..||..|
T Consensus         2 ~~i~I~G~-~GsGKST~ak~la~~l   25 (712)
T PRK09518          2 IIVAIDGP-AGVGKSSVSRALAQYL   25 (712)
T ss_pred             eEEEEECC-CCCCHHHHHHHHHHHh
Confidence            37999999 9999999999999997

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=93.35  E-value=0.083  Score=43.41  Aligned_cols=27  Identities=30%  Similarity=0.402  Sum_probs=22.1

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHc
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKR   34 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~   34 (233)
                      ..+.|+|. +|+||||++..++..+...
T Consensus        44 ~~~~l~G~-~G~GKTtl~~~l~~~l~~~   70 (269)
T TIGR03015        44 GFILITGE-VGAGKTTLIRNLLKRLDQE   70 (269)
T ss_pred             CEEEEEcC-CCCCHHHHHHHHHHhcCCC
Confidence            36777777 9999999999998887643

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=93.34  E-value=0.065  Score=49.66  Aligned_cols=34  Identities=12%  Similarity=0.130  Sum_probs=30.3

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG   40 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~   40 (233)
                      .++++++|+ +|||||+++..+|.++.++-.|+.+
T Consensus       350 GpILcLVGP-PGVGKTSLgkSIA~al~RkfvR~sL  383 (782)
T COG0466         350 GPILCLVGP-PGVGKTSLGKSIAKALGRKFVRISL  383 (782)
T ss_pred             CcEEEEECC-CCCCchhHHHHHHHHhCCCEEEEec
Confidence            468999999 9999999999999999888777765

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=93.31  E-value=0.074  Score=41.42  Aligned_cols=25  Identities=20%  Similarity=0.173  Sum_probs=20.4

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      ...++|.|+ .|+||||+...|+..+
T Consensus         2 g~~i~l~G~-sGsGKsTl~~~l~~~~   26 (186)
T PRK10078          2 GKLIWLMGP-SGSGKDSLLAALRQRE   26 (186)
T ss_pred             CcEEEEECC-CCCCHHHHHHHHhccC
Confidence            346888888 9999999998886654

>TIGR03783 Bac_Flav_CT_G Bacteroides conjugation system ATPase, TraG family

Probab=93.28  E-value=0.13  Score=49.42  Aligned_cols=36  Identities=19%  Similarity=0.408  Sum_probs=32.6

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEee
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKP   43 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp   43 (233)
                      ...+|.|+ +|+|||++...|+..+.+.|.+|.++|+
T Consensus       439 ~N~~I~G~-sGsGKS~l~~~l~~~~~~~g~~vviiD~  474 (829)
T TIGR03783       439 RNKFILGP-SGSGKSFFTNHLVRQYYEQGTHILLVDT  474 (829)
T ss_pred             CceEEECC-CCCCHHHHHHHHHHHHHhcCCEEEEECC
Confidence            35688888 9999999999999999999999999996

Members of this family include the predicted ATPase, TraG, encoded by transfer region genes of conjugative transposons of Bacteroides, such as CTnDOT, found on the main chromosome. Members also include TraG homologs borne on plasmids in Bacteroides. The protein family is related to the conjugative transfer system ATPase VirB4.

>PLN02840 tRNA dimethylallyltransferase

Probab=93.24  E-value=0.094  Score=46.13  Aligned_cols=27  Identities=22%  Similarity=0.297  Sum_probs=23.2

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFK   32 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~   32 (233)
                      +.++|+|+|+ +|+||||++..||..+.
T Consensus        20 ~~~vi~I~Gp-tgsGKTtla~~La~~~~   46 (421)
T PLN02840         20 KEKVIVISGP-TGAGKSRLALELAKRLN   46 (421)
T ss_pred             CCeEEEEECC-CCCCHHHHHHHHHHHCC
Confidence            3457889888 99999999999998883

>TIGR01448 recD_rel helicase, putative, RecD/TraA family

Probab=93.24  E-value=0.14  Score=48.37  Aligned_cols=37  Identities=24%  Similarity=0.286  Sum_probs=30.5

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcC--CeeeEEeee
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRG--ISCIGMKPI   44 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G--~~Vl~~dp~   44 (233)
                      ++..|+|. +|+||||+...+...+.+.|  ++|.++=|.
T Consensus       339 ~~~iitGg-pGTGKTt~l~~i~~~~~~~~~~~~v~l~ApT  377 (720)
T TIGR01448       339 KVVILTGG-PGTGKTTITRAIIELAEELGGLLPVGLAAPT  377 (720)
T ss_pred             CeEEEECC-CCCCHHHHHHHHHHHHHHcCCCceEEEEeCc
Confidence            45666666 99999999999999999888  788877654

This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	233
1dts_A	221	Crystal Structure Of An Atp Dependent Carboxylase,		5e-26
1dam_A	224	Dethiobiotin Synthetase Complexed With Dethiobiotin		6e-26
3of5_A	228	Crystal Structure Of A Dethiobiotin Synthetase From		7e-14
3mle_A	242	Crystal Structure Of Dethiobiotin Synthetase (Biod)		6e-07
2qmo_A	220	Crystal Structure Of Dethiobiotin Synthetase (Biod)		4e-04

>pdb|1DTS|A Chain A, Crystal Structure Of An Atp Dependent Carboxylase, Dethiobiotin Synthase, At 1.65 Angstroms Resolution Length = 221

Iteration: 1
 Score =  114 bits (285), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 70/208 (33%), Positives = 97/208 (46%), Gaps = 4/208 (1%)
Query: 8   HYFXXXXXXXXXXXXXSCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNK 67
            YF             SCALL   K  G    G KP+ASG+    +     N D   L +
Sbjct: 4   RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGL--RNSDALALQR 61
Query: 68  YSNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGG 127
            S+   ++   +NPY F  P SP+  S  E R I +  +      L    D +++EG GG
Sbjct: 62  NSSLQLDYAT-VNPYTFAEPTSPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGG 120
Query: 128 FSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQI 187
           +  P  D    AD   +  LP+ILV+ +K+GCIN+A+L+ + I   GL L GWVAN    
Sbjct: 121 WFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTP 180
Query: 188 VDTLFANENYIELTKYLNVTPLGRIPYL 215
                A E    LT+ +    LG IP+L
Sbjct: 181 PGKRHA-EYMTTLTRMIPAPLLGEIPWL 207

>pdb|1DAM|A Chain A, Dethiobiotin Synthetase Complexed With Dethiobiotin, Adp, Inorganic Phosphate And Magnesium Length = 224

Iteration: 1
 Score =  114 bits (284), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 70/208 (33%), Positives = 97/208 (46%), Gaps = 4/208 (1%)
Query: 8   HYFXXXXXXXXXXXXXSCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNK 67
            YF             SCALL   K  G    G KP+ASG+    +     N D   L +
Sbjct: 3   RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGL--RNSDALALQR 60
Query: 68  YSNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGG 127
            S+   ++   +NPY F  P SP+  S  E R I +  +      L    D +++EG GG
Sbjct: 61  NSSLQLDYAT-VNPYTFAEPTSPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGG 119
Query: 128 FSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQI 187
           +  P  D    AD   +  LP+ILV+ +K+GCIN+A+L+ + I   GL L GWVAN    
Sbjct: 120 WFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTP 179
Query: 188 VDTLFANENYIELTKYLNVTPLGRIPYL 215
                A E    LT+ +    LG IP+L
Sbjct: 180 PGKRHA-EYMTTLTRMIPAPLLGEIPWL 206

>pdb|3OF5|A Chain A, Crystal Structure Of A Dethiobiotin Synthetase From Francisella Tularensis Subsp. Tularensis Schu S4 Length = 228

Iteration: 1
 Score = 73.9 bits (180), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 14/165 (8%)
Query: 24  SCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDV-NLLNKYSNSLYEFTKL-INP 81
           S  L+   + + I  + +KP+ASG    ++      EDV ++LN Y    ++FT   IN 
Sbjct: 22  STKLIEVCEHQNIKSLCLKPVASGQSQFSE----LCEDVESILNAYK---HKFTAAEINL 74
Query: 82  YLFKYPISPY---TSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENS 138
             F   ++P+     + ++  I N    I    Y  +L D++ +EG GG   P+ D+   
Sbjct: 75  ISFNQAVAPHIIAAKTKVDISIENLKQFIE-DKYNQDL-DILFIEGAGGLLTPYSDHTTQ 132
Query: 139 ADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVAN 183
            DL + L +P++LV  +K+GCIN+ LL++  +N   +KL GW+AN
Sbjct: 133 LDLIKALQIPVLLVSAIKVGCINHTLLTINELNRHNIKLAGWIAN 177

>pdb|3MLE|A Chain A, Crystal Structure Of Dethiobiotin Synthetase (Biod) From Helicobacter Pylori Cocrystallized With Atp Length = 242

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 74/154 (48%), Gaps = 22/154 (14%)
Query: 24  SCA-LLSEF-KKRGISCIGMKPIASG---AYLNNKNKIWFNEDVNLLNKYSN----SLYE 74
           +CA LL+++    G+  I +KPI +G   A  ++ +   F +D  LL++       S Y 
Sbjct: 37  TCARLLAQYCNACGVKTILLKPIETGVNDAINHSSDAHLFLQDNRLLDRSLTLKDISFYR 96
Query: 75  FTKLINPYLFKY---PISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVP 131
           + K+  P + +    P +P  + NL  R+ N           +   D++I+EG GG  VP
Sbjct: 97  YHKVSAPLIAQQEEDPNAPIDTDNLTQRLHN----------FTKTYDLVIVEGAGGLCVP 146
Query: 132 FHDNENSADLAEKLGLPIILVIDLKIGCINNALL 165
               EN  D A KL   ++L+    +G IN+ LL
Sbjct: 147 ITLEENMLDFALKLKAKMLLISHDNLGLINDCLL 180

>pdb|2QMO|A Chain A, Crystal Structure Of Dethiobiotin Synthetase (Biod) From Helicobacter Pylori Length = 220

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 73/154 (47%), Gaps = 22/154 (14%)
Query: 24  SCA-LLSEF-KKRGISCIGMKPIASG---AYLNNKNKIWFNEDVNLLNKYSN----SLYE 74
           +CA LL+++    G+  I +KPI +G   A  ++ +   F +D  LL++       S Y 
Sbjct: 17  TCARLLAQYCNACGVKTILLKPIETGVNDAINHSSDAHLFLQDNRLLDRSLTLKDISFYR 76
Query: 75  FTKLINPYLFKY---PISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVP 131
           + K+  P + +    P +P  + NL  R+ N           +   D++I+EG GG  VP
Sbjct: 77  YHKVSAPLIAQQEEDPNAPIDTDNLTQRLHN----------FTKTYDLVIVEGAGGLCVP 126
Query: 132 FHDNENSADLAEKLGLPIILVIDLKIGCINNALL 165
               EN  D A KL    +L+    +G IN+ LL
Sbjct: 127 ITLEENXLDFALKLKAKXLLISHDNLGLINDCLL 160

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	233
1byi_A	224	Dethiobiotin synthase; biotin synthesis, cyclo-lig	6e-71
3of5_A	228	Dethiobiotin synthetase; structural genomics, cent	3e-67
3fgn_A	251	Dethiobiotin synthetase; biotin biosynthesis, BIOD	2e-61
3qxc_A	242	Dethiobiotin synthetase; DTBS, structural genomics	2e-59
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	3e-20

>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A Length = 224

 Score =  215 bits (549), Expect = 6e-71
 Identities = 82/226 (36%), Positives = 113/226 (50%), Gaps = 5/226 (2%)

Query: 8   HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNK 67
            YF+TGT+T +GKT+ SCALL   K  G    G KP+ASG+      +   N D   L +
Sbjct: 3   RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGS--EKTPEGLRNSDALALQR 60

Query: 68  YSNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGG 127
            S SL      +NPY F  P SP+  S  E R I +  +      L    D +++EG GG
Sbjct: 61  NS-SLQLDYATVNPYTFAEPTSPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGG 119

Query: 128 FSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQI 187
           +  P  D    AD   +  LP+ILV+ +K+GCIN+A+L+ + I   GL L GWVAN    
Sbjct: 120 WFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTP 179

Query: 188 VDTLFANENYIELTKYLNVTPLGRIPYLYNLNIN-LISHYLDFSSL 232
                A E    LT+ +    LG IP+L     N     Y++ + L
Sbjct: 180 PGKRHA-EYMTTLTRMIPAPLLGEIPWLAENPENAATGKYINLALL 224

>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp} Length = 228

 Score =  206 bits (525), Expect = 3e-67
 Identities = 56/226 (24%), Positives = 102/226 (45%), Gaps = 12/226 (5%)

Query: 8   HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNK 67
            +FI GT+T +GKT IS  L+   + + I  + +KP+ASG            EDV  +  
Sbjct: 6   KFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLKPVASGQ----SQFSELCEDVESILN 61

Query: 68  YSNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIIN-CYNYLSNLTDVIILEGIG 126
                      IN   F   ++P+  +      I+  ++     +  +   D++ +EG G
Sbjct: 62  AY-KHKFTAAEINLISFNQAVAPHIIAAKTKVDISIENLKQFIEDKYNQDLDILFIEGAG 120

Query: 127 GFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ 186
           G   P+ D+    DL + L +P++LV  +K+GCIN+ LL++  +N   +KL GW+AN   
Sbjct: 121 GLLTPYSDHTTQLDLIKALQIPVLLVSAIKVGCINHTLLTINELNRHNIKLAGWIANCND 180

Query: 187 IVDTLFANENYIELTKYLNVTPLGRIPYLYNLNINLISHYLDFSSL 232
             +  + +E    + +        +I    +        ++D S +
Sbjct: 181 -SNIKYIDEQINTIEELSGYKCSAKISRNADY-----LDFIDLSKI 220

>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A* Length = 251

 Score =  191 bits (488), Expect = 2e-61
 Identities = 44/208 (21%), Positives = 85/208 (40%), Gaps = 15/208 (7%)

Query: 9   YFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKY 68
             +TGT T +GKT++  AL S  ++ GI     KP+ +G           ++D+  + + 
Sbjct: 29  LVVTGTGTGVGKTVVCAALASAARQAGIDVAVCKPVQTGTARG-------DDDLAEVGRL 81

Query: 69  SNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIIN-CYNYLSNLTDVIILEGIGG 127
           +      T+L     +  P++P  ++      +     I      L     + ++EG GG
Sbjct: 82  AGV----TQLAGLARYPQPMAPAAAAEHAGMALPARDQIVRLIADLDRPGRLTLVEGAGG 137

Query: 128 FSVPFHDNENS-ADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ 186
             V   +   +  D+A  +    ++V+   +G +N+  L+LEA+ ++ +   G V     
Sbjct: 138 LLVELAEPGVTLRDVAVDVAAAALVVVTADLGTLNHTKLTLEALAAQQVSCAGLVIGSWP 197

Query: 187 IVDTLFANENYIELTKYLNVTPLGRIPY 214
               L A  N   L +   V     +P 
Sbjct: 198 DPPGLVAASNRSALARIAMV--RAALPA 223

>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A Length = 242

 Score =  186 bits (475), Expect = 2e-59
 Identities = 55/220 (25%), Positives = 90/220 (40%), Gaps = 10/220 (4%)

Query: 9   YFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKY 68
            FI+ TNTN GKT  +  L       G+  I +KPI +G      + I  + D +L  + 
Sbjct: 24  LFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGV----NDAINHSSDAHLFLQD 79

Query: 69  SNSLYE--FTKLINPYLFKYPISPYTSSNLE--NRIINTSHIINCYNYLSNLTDVIILEG 124
           +  L      K I+ Y +    +P  +   E  N  I+T ++    +  +   D++I+EG
Sbjct: 80  NRLLDRSLTLKDISFYRYHKVSAPLIAQQEEDPNAPIDTDNLTQRLHNFTKTYDLVIVEG 139

Query: 125 IGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANH 184
            GG  VP    EN  D A KL   ++L+    +G IN+ LL+   + S  L     +   
Sbjct: 140 AGGLCVPITLEENMLDFALKLKAKMLLISHDNLGLINDCLLNDFLLKSHQLDYKIAINLK 199

Query: 185 TQIVDTLFANENYIE-LTKYLNVTPLGRIPYLYNLNINLI 223
                    +  YIE      N  P+        + ++  
Sbjct: 200 GNNTAFHSISLPYIELFNTRSNN-PIVIFQQSLKVLMSFA 238

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* Length = 831

 Score = 88.1 bits (218), Expect = 3e-20
 Identities = 51/286 (17%), Positives = 100/286 (34%), Gaps = 65/286 (22%)

Query: 4   KNFLHYFITGTNTNIGKTIISCAL-----LSEFKKRGISCIGMKPIASGAYLNNKNKIWF 58
            N   Y I   NT++GKT++S  +     L +        + +KPI +G   ++ ++  F
Sbjct: 32  LNHPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLYLKPIQTGFPSDSDSRFVF 91

Query: 59  NEDVNLLNKYSNSLYEFTKLINP------------------------------------- 81
           ++  +L  +    +     +++                                      
Sbjct: 92  SKLDSLSLRRQIPISISNSVLHSSLPAAKSLGLNVEVSESGMCSLNFRDEKTVTGAPELL 151

Query: 82  ----YLFKYPISPYTSSNLENRIINTSHII-----------NCYNYLSNLTDVIILEGIG 126
               Y ++  ISP+ ++  EN  +  S ++            C         + ++E  G
Sbjct: 152 CKTLYAWEAAISPHLAAERENATVEDSVVLQMIEKCLKEEMECGVKSEKSDLLCLVETAG 211

Query: 127 GFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ 186
           G + P        DL     LP ILV D ++G I+  + + E++  RG  +   V     
Sbjct: 212 GVASPGPSGTLQCDLYRPFRLPGILVGDGRLGGISGTIAAYESLKLRGYDIAAVVFEDHG 271

Query: 187 IVDTLFANENYIELTKYL-NVTPLGRIPYLYNLNINLISHYLDFSS 231
           +        N + LT YL N  P+  +P +     + +  +   S 
Sbjct: 272 L-------VNEVPLTSYLRNKVPVLVLPPVPKDPSDDLIEWFVESD 310

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	233
3of5_A	228	Dethiobiotin synthetase; structural genomics, cent	100.0
1byi_A	224	Dethiobiotin synthase; biotin synthesis, cyclo-lig	100.0
3fgn_A	251	Dethiobiotin synthetase; biotin biosynthesis, BIOD	100.0
3qxc_A	242	Dethiobiotin synthetase; DTBS, structural genomics	100.0
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.95
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	99.92
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	99.92
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	99.92
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	99.91
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	99.91
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	99.91
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	99.91
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	99.9
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	99.89
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	99.89
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	99.88
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	99.88
3end_A	307	Light-independent protochlorophyllide reductase ir	99.87
2afh_E	289	Nitrogenase iron protein 1; nitrogen fixation, iro	99.87
3cwq_A	209	Para family chromosome partitioning protein; alpha	99.87
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	99.86
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	99.86
2xj4_A	286	MIPZ; replication, cell division, ATPase, WACA; 1.	99.86
3fwy_A	314	Light-independent protochlorophyllide reductase I	99.86
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	99.85
3zq6_A	324	Putative arsenical pump-driving ATPase; tail-ancho	99.85
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	99.82
3ez2_A	398	Plasmid partition protein A; type IA, DNA binding,	99.81
3pg5_A	361	Uncharacterized protein; structural genomics, PSI-	99.81
3ez9_A	403	Para; DNA binding, winged-HTH, partition, biosynth	99.8
2woo_A	329	ATPase GET3; tail-anchored, membrane protein, targ	99.78
2woj_A	354	ATPase GET3; tail-anchored, membrane protein, targ	99.77
2obn_A	349	Hypothetical protein; structural genomics, joint c	99.75
3iqw_A	334	Tail-anchored protein targeting factor GET3; ATPas	99.73
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	99.71
3io3_A	348	DEHA2D07832P; chaperone, membrane traffic, ATPase;	99.71
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	99.7
2xxa_A	433	Signal recognition particle protein; protein trans	99.63
3igf_A	374	ALL4481 protein; two-domained protein consisting o	99.62
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	99.5
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	99.48
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	99.48
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	99.46
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	99.42
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.38
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	99.34
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	99.29
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	99.26
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	99.23
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.13
2g0t_A	350	Conserved hypothetical protein; structural genomic	99.05
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	98.92
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	98.74
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	98.68
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.55
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.44
1s1m_A	545	CTP synthase; CTP synthetase, UTP:ammonia ligase (	98.4
1vco_A	550	CTP synthetase; tetramer, riken structural genomic	98.36
3pzx_A	557	Formate--tetrahydrofolate ligase; HET: TOE; 2.20A	98.11
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	98.11
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.9
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.87
1xp8_A	366	RECA protein, recombinase A; recombination, radior	97.75
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.73
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	97.61
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.58
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.49
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.47
3io5_A	333	Recombination and repair protein; storage dimer, i	97.4
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	97.38
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	97.37
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	97.33
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.32
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.31
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.27
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.26
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	97.26
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.09
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	97.08
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	97.06
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.03
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.97
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	96.97
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	96.97
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.95
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	96.95
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	96.94
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.92
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.91
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.91
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.91
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.9
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.88
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.88
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	96.87
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.87
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.87
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.84
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	96.83
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.8
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.77
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	96.74
1via_A	175	Shikimate kinase; structural genomics, transferase	96.73
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	96.69
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.68
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.67
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.67
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	96.67
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.66
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	96.65
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.65
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.65
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.64
3bos_A	242	Putative DNA replication factor; P-loop containing	96.63
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	96.59
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	96.59
2qgz_A	308	Helicase loader, putative primosome component; str	96.58
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.56
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	96.56
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.55
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.54
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.53
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.52
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.52
2c5m_A	294	CTP synthase; cytidine 5-prime triphosphate synthe	96.5
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.5
2og2_A	359	Putative signal recognition particle receptor; nuc	96.49
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.47
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.39
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	96.37
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.35
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.34
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.31
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.3
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.28
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	96.27
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.25
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.23
3nva_A	535	CTP synthase; rossman fold, nucleotide binding, LI	96.22
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.22
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.2
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	96.19
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.17
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.15
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.15
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	96.14
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.12
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.12
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	96.11
2r6a_A	454	DNAB helicase, replicative helicase; replication,	96.11
3do6_A	543	Formate--tetrahydrofolate ligase; TM1766, putative	96.11
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.1
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	96.1
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	96.06
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.01
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.01
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.01
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	96.0
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.0
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	95.98
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	95.98
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	95.98
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	95.95
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	95.94
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.94
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	95.93
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	95.92
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	95.91
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	95.9
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	95.89
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	95.87
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	95.85
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	95.83
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	95.82
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	95.81
2hf9_A	226	Probable hydrogenase nickel incorporation protein	95.81
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.8
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.8
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	95.79
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	95.79
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	95.78
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	95.75
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	95.75
2vli_A	183	Antibiotic resistance protein; transferase, tunica	95.71
2z43_A	324	DNA repair and recombination protein RADA; archaea	95.7
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	95.67
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.66
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	95.59
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	95.55
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	95.54
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	95.53
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.49
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	95.46
1w78_A	422	FOLC bifunctional protein; DHFS, dihydrofolate syn	95.45
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	95.45
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.44
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	95.43
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	95.42
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	95.4
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	95.39
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	95.38
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	95.36
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	95.35
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	95.28
1jbw_A	428	Folylpolyglutamate synthase; FPGS folate AMPPCP te	95.23
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	95.2
3nrs_A	437	Dihydrofolate:folylpolyglutamate synthetase; struc	95.2
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	95.2
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	95.18
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	95.17
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	95.17
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	95.15
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	95.15
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	95.14
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.11
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	95.09
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	95.08
2chg_A	226	Replication factor C small subunit; DNA-binding pr	95.08
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	95.07
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	95.05
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	95.04
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	95.03
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	95.01
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	94.98
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	94.97
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	94.92
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	94.88
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	94.85
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	94.85
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	94.83
1o5z_A	442	Folylpolyglutamate synthase/dihydrofolate synthas;	94.82
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	94.81
2vos_A	487	Folylpolyglutamate synthase protein FOLC; ligase,	94.8
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	94.79
1e9r_A	437	Conjugal transfer protein TRWB; coupling protein,	94.75
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	94.72
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	94.7
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	94.66
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	94.64
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	94.61
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	94.59
1e8c_A	498	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diami	94.58
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	94.57
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	94.53
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	94.51
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	94.5
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	94.49
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	94.49
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	94.46
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	94.44
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	94.43
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	94.42
2wtz_A	535	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-di	94.41
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	94.4
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	94.38
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	94.35
4a74_A	231	DNA repair and recombination protein RADA; hydrola	94.27
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	94.27
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	94.26
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	94.23
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	94.2
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	94.14
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	94.06
2eyu_A	261	Twitching motility protein PILT; pilus retraction	94.06
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	94.02
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	93.95
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	93.9
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	93.87
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	93.86
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	93.83
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	93.83
2gk6_A	624	Regulator of nonsense transcripts 1; UPF1, helicas	93.81
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	93.75
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	93.73
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	93.72
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	93.67
1tue_A	212	Replication protein E1; helicase, replication, E1E	93.66
2ewv_A	372	Twitching motility protein PILT; pilus retraction	93.64
4ehx_A	315	Tetraacyldisaccharide 4'-kinase; membrane protein,	93.62
1j6u_A	469	UDP-N-acetylmuramate-alanine ligase MURC; structur	93.6
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	93.48
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	93.44
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	93.34
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	93.31
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	93.22
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	93.21
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	93.19
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	93.18
2wjy_A	800	Regulator of nonsense transcripts 1; nonsense medi	93.17
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	93.14
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	93.13
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	93.13
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	93.09
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	93.09
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	93.09
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	93.08
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	93.04
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	92.95
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	92.95
2vo1_A	295	CTP synthase 1; pyrimidine biosynthesis, glutamine	92.93
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	92.93
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	92.91
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	92.89
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	92.87
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	92.77
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	92.7
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	92.66
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	92.54
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	92.54
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	92.29
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	92.27
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	92.14
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	92.05
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	92.04
2xzl_A	802	ATP-dependent helicase NAM7; hydrolase-RNA complex	92.03
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	91.98
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	91.98
1p9r_A	418	General secretion pathway protein E; bacterial typ	91.96
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	91.96
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	91.86
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	91.84
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	91.78
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	91.78
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	91.76
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	91.74
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	91.68
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	91.67
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	91.64
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	91.54
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	91.42
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	91.39
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	91.39
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	91.26
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	91.24
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	90.96
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	90.94
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	90.92
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	90.88
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	90.79
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	90.75
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	90.66
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	90.63
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	90.61
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	90.56
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	90.41
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	90.4
1p3d_A	475	UDP-N-acetylmuramate--alanine ligase; alpha/beta p	90.37
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	90.36
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	90.3
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	90.18
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	90.15
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	90.11
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	90.06
1osn_A	341	Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, tra	90.04
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	90.02
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	89.99
2fna_A	357	Conserved hypothetical protein; structural genomic	89.97
2f00_A	491	UDP-N-acetylmuramate--L-alanine ligase; amide bond	89.95
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	89.81
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	89.72
3lfu_A	647	DNA helicase II; SF1 helicase, ATP-binding, DNA da	89.63
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	89.62
3ice_A	422	Transcription termination factor RHO; transcriptio	89.6
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	89.58
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	89.52
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	89.52
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	89.49
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	89.44
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	89.39
1e2k_A	331	Thymidine kinase; transferase, antiviral drug, enz	89.3
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	89.27
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	89.25
3bs4_A	260	Uncharacterized protein PH0321; structural genomic	89.25
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	89.22
1gg4_A	452	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino	89.18
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	89.17
1f0k_A	364	MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pe	89.16
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	89.11
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	89.11
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	88.98
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	88.98
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	88.92
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	88.89
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	88.86
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	88.79
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	88.74
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	88.73
2chq_A	319	Replication factor C small subunit; DNA-binding pr	88.62
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	88.55
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	88.54
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	88.52
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	88.47
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	88.43
3pvs_A	447	Replication-associated recombination protein A; ma	88.29
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	88.26
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	88.18
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	88.14
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	88.14
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	88.04
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	88.02
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	88.01
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	88.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	87.95
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	87.94
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	87.94
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	87.86
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	87.82
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	87.82
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	87.81
2r44_A	331	Uncharacterized protein; putative ATPase, structur	87.72
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	87.67
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	87.64
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	87.62
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	87.62
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	87.55
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	87.5
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	87.43
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	87.36
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	87.31
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	87.28
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	87.28
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	87.26
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	87.22
1nrj_B	218	SR-beta, signal recognition particle receptor beta	87.2
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	87.14
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	87.13
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	87.11
3kta_A	182	Chromosome segregation protein SMC; structural mai	87.1
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	87.07
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	87.02
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	86.98
3co5_A	143	Putative two-component system transcriptional RES	86.96
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	86.89
2wji_A	165	Ferrous iron transport protein B homolog; membrane	86.82
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	86.81
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	86.75
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	86.65
2ged_A	193	SR-beta, signal recognition particle receptor beta	86.63
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	86.62
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	86.57
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	86.5
2v6i_A	431	RNA helicase; membrane, hydrolase, transmembrane,	86.44
3rih_A	293	Short chain dehydrogenase or reductase; structural	86.42
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	86.41
3b6e_A	216	Interferon-induced helicase C domain-containing P;	86.33
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	86.31
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	86.26
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	86.26
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	86.23
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	86.22
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	86.22
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	86.2
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	86.05
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	86.02
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	85.98
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	85.93
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	85.77
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	85.75
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	85.74
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	85.67
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	85.66
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	85.64
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	85.63
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	85.59
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	85.55
2iut_A	574	DNA translocase FTSK; nucleotide-binding, chromoso	85.55
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	85.54
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	85.53
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	85.52
1rif_A	282	DAR protein, DNA helicase UVSW; bacteriophage, REC	85.51
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	85.48
2fz4_A	237	DNA repair protein RAD25; RECA-like domain, DNA da	85.43
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	85.43
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	85.37
1xhl_A	297	Short-chain dehydrogenase/reductase family member	85.34
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	85.32
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	85.32
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	85.31
2am1_A	454	SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl	85.31
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	85.31
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	85.3
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	85.28
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	85.28
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	85.21
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	85.2
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	85.19
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	85.14
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	85.12
2va8_A	715	SSO2462, SKI2-type helicase; hydrolase, DNA repair	85.1
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	85.09
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	85.08
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	85.05
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	84.99
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	84.97
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	84.96
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	84.96
1b0u_A	262	Histidine permease; ABC transporter, transport pro	84.88
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	84.86
3h1t_A	590	Type I site-specific restriction-modification syst	84.83
1spx_A	278	Short-chain reductase family member (5L265); paral	84.82

>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}

Probab=100.00  E-value=6.3e-39  Score=258.14  Aligned_cols=214  Identities=25%  Similarity=0.455  Sum_probs=184.8

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeee
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLF   84 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~   84 (233)
                      +||.|+|+|+.+|+|||++|++|+++|+++|++|.++||++++++..+  +++.+.|..+  ..++...++ +.++++.+
T Consensus         3 ~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~KPv~~g~~~~~--~~~~~~D~~~--~~~~~~~~~-~~~~~~~~   77 (228)
T 3of5_A            3 AMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLKPVASGQSQFS--ELCEDVESIL--NAYKHKFTA-AEINLISF   77 (228)
T ss_dssp             TCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEECSEEESBCSSS--SSBHHHHHHH--HHTTTSSCH-HHHCSEEE
T ss_pred             CCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEecceeecCccCC--CCCChHHHHH--HhcCCCCCh-hhEEEEEE
Confidence            479999999999999999999999999999999999999999887654  4554456654  566765444 45678999


Q ss_pred             cCCCChhhhhhhcCCCCCHHHHHHHHHH-hhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHH
Q psy14904         85 KYPISPYTSSNLENRIINTSHIINCYNY-LSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNA  163 (233)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~  163 (233)
                      ..|.+|+.++.+++.....+++.+.+++ ++++||+|||||++|+.+|+....+++++++.+++|+++|++.+.++++++
T Consensus        78 ~~p~sp~~aa~~~~~~i~~~~i~~~~~~~l~~~~D~vlIEgaggl~~p~~~~~~~adla~~l~~pviLV~~~~~~~i~~~  157 (228)
T 3of5_A           78 NQAVAPHIIAAKTKVDISIENLKQFIEDKYNQDLDILFIEGAGGLLTPYSDHTTQLDLIKALQIPVLLVSAIKVGCINHT  157 (228)
T ss_dssp             SSSSCHHHHHHHTTCCCCHHHHHHHHHGGGGSSCSEEEEEEEEETTCBSSSSCBHHHHHHHHTCCEEEEEECSTTHHHHH
T ss_pred             CCCCCHHHHHHHcCCCCCHHHHHHHHHHHHHccCCEEEEECCCccccccccchhHHHHHHHcCCCEEEEEcCCcchHHHH
Confidence            9999999998888887788999999999 999999999999999999988888999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCChhhhhhhcCC
Q psy14904        164 LLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNINLISHYLDF  229 (233)
Q Consensus       164 ~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~~~~~~~~~~  229 (233)
                      ..+++.+++.++++.|+|+|+++ ++...++.+.+.+++.+|+|++|+||     ...+++.|++.
T Consensus       158 ~~~~~~l~~~~~~i~GvIlN~~~-~~~~~~~~~~~~l~~~~g~pvLG~iP-----~~~~~~~~~~~  217 (228)
T 3of5_A          158 LLTINELNRHNIKLAGWIANCND-SNIKYIDEQINTIEELSGYKCSAKIS-----RNADYLDFIDL  217 (228)
T ss_dssp             HHHHHHHHHTTCCEEEEEEEECC-TTCSCHHHHHHHHHHHHSCCCSEEEE-----SSCCHHHHHHH
T ss_pred             HHHHHHHHhCCCcEEEEEEECcC-CcchhhHHHHHHHHHhhCCCEEEECC-----CchHhhhhcCH
Confidence            99999999999999999999998 65444567888999989999999999     23445666554

>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A

Probab=100.00  E-value=3.4e-37  Score=247.11  Aligned_cols=220  Identities=35%  Similarity=0.569  Sum_probs=176.5

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeecC
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKY   86 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~   86 (233)
                      |+|+|+|+|||+||||+|+|||.+|+++|+||+++||++++....+  .++.+.+..++....+..... ..+.++.+..
T Consensus         2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~dp~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~   78 (224)
T 1byi_A            2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTP--EGLRNSDALALQRNSSLQLDY-ATVNPYTFAE   78 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECSEEESCBCCT--TSCBCHHHHHHHHTCSSCCCH-HHHCSEEESS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcceecCCccCC--CCcChHHHHHHHHHhCCCCCh-hhcccEEeCC
Confidence            6899999999999999999999999999999999999987665332  344445666565555533221 2334555666


Q ss_pred             CCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHH
Q psy14904         87 PISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLS  166 (233)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~  166 (233)
                      |.+++++...++.....+++.+.+++++++|||||||||||+..|+......+++++.++.++++|+.++.++++++..+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~~~~  158 (224)
T 1byi_A           79 PTSPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLT  158 (224)
T ss_dssp             CSCHHHHHHHHTCCCCHHHHHHHHHHHHTTCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHH
T ss_pred             CCCHHHHHHHcCCCCCHHHHHHHHHHHHHhCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHHHHH
Confidence            66776655444444567899999999999999999999999987776557889999998889999999999899999999


Q ss_pred             HHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCC-CCChhhhhhhcCCC
Q psy14904        167 LEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLY-NLNINLISHYLDFS  230 (233)
Q Consensus       167 ~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~-~l~~~~~~~~~~~~  230 (233)
                      ++.+++.+++++|+|+|+++ ++....++..+.+++.++.|+++.||+++ ..+..++++||+.+
T Consensus       159 i~~l~~~~~~i~gvvlN~~~-~~~~~~~~~~~~l~~~~~~~vl~~Ip~~~~~~~~~~~~~~~~~~  222 (224)
T 1byi_A          159 AQVIQHAGLTLAGWVANDVT-PPGKRHAEYMTTLTRMIPAPLLGEIPWLAENPENAATGKYINLA  222 (224)
T ss_dssp             HHHHHHTTCCEEEEEEECCS-SCCTTHHHHHHHHHHHSSSCEEEEECCCTTCTTCCCCGGGCCGG
T ss_pred             HHHHHHCCCcEEEEEEeCCC-CchhhHHHHHHHHHHHcCCCEEEECCCCcCCccHHHHHHHhccc
Confidence            99999999999999999998 65445567788888889999999999999 55555788888754

>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*

Probab=100.00  E-value=1.1e-35  Score=241.84  Aligned_cols=204  Identities=21%  Similarity=0.320  Sum_probs=175.9

Q ss_pred             CCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceee
Q psy14904          2 INKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINP   81 (233)
Q Consensus         2 ~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~   81 (233)
                      -.++|+.|+|+++.+|+|||++|++|+++|+++|++|.++||+++++...+       .|..+++..++...    ..++
T Consensus        22 ~~~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fKPv~~g~~~~~-------~D~~~~~~~~g~~~----~~~~   90 (251)
T 3fgn_A           22 FQSHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCKPVQTGTARGD-------DDLAEVGRLAGVTQ----LAGL   90 (251)
T ss_dssp             CCSSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEEEEECCGGGTC-------CHHHHHHHHHCCCE----EEEE
T ss_pred             cccCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeeecCCCCCC-------HHHHHHHHHcCCCC----CCCC
Confidence            346789999999999999999999999999999999999999998765321       47888888888642    3467


Q ss_pred             eeecCCCChhhhhhhcCC-CCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCC-CchHHHHHHhCCCEEEEEcCCCCc
Q psy14904         82 YLFKYPISPYTSSNLENR-IINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDN-ENSADLAEKLGLPIILVIDLKIGC  159 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~-~~~~~l~~~~~~~vllV~~~~~~~  159 (233)
                      +.+..|.+|+.++..++. ..+.+.+.+.+++++++||+|||||++|+.+|+... .+++++++.+++|+|+|++.+.++
T Consensus        91 ~~~~~p~sP~~aa~~~~~~~~~~~~i~~~~~~l~~~~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~~~~~g~  170 (251)
T 3fgn_A           91 ARYPQPMAPAAAAEHAGMALPARDQIVRLIADLDRPGRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLGT  170 (251)
T ss_dssp             EECSSSSCHHHHHHHTTCCCCCHHHHHHHHHTTCCTTCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEECSSTTH
T ss_pred             eeECCCCChHHHHHHcCCCCCCHHHHHHHHHHHHhcCCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEEcCCCcc
Confidence            888889999998887776 678899999999999999999999999999887655 789999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCcEEEEEEcccCCCc-hhhhhhhHHHHHhhcCCCceEecCCCCCCC
Q psy14904        160 INNALLSLEAINSRGLKLIGWVANHTQIVD-TLFANENYIELTKYLNVTPLGRIPYLYNLN  219 (233)
Q Consensus       160 ~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~-~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~  219 (233)
                      ++++..+++.+++.++++.|+|+|++. .+ ...++.+.+.|++.  +|++|+||+++...
T Consensus       171 i~~~~lt~~~l~~~g~~i~GvIlN~v~-~~~~~~~~~~~~~le~~--vpvLG~iP~~~~~l  228 (251)
T 3fgn_A          171 LNHTKLTLEALAAQQVSCAGLVIGSWP-DPPGLVAASNRSALARI--AMVRAALPAGAASL  228 (251)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEEEEEC-SSCCHHHHHHHHHHHHH--SCEEEEEETTGGGC
T ss_pred             HHHHHHHHHHHHhCCCCEEEEEEECCC-CchhhhhhhHHHHHHHh--CCEEEEeeCCCCcC
Confidence            999999999999999999999999996 32 22345677888876  99999999987443

>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A

Probab=100.00  E-value=2.8e-34  Score=232.29  Aligned_cols=205  Identities=25%  Similarity=0.283  Sum_probs=170.2

Q ss_pred             CCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHH----HHHh-CCCccccc
Q psy14904          3 NKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLL----NKYS-NSLYEFTK   77 (233)
Q Consensus         3 ~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~----~~~~-~~~~~~~~   77 (233)
                      ++|+|.|+|+|+.+|+|||++|++|+++|+++|++|.++||+++++...+   + .+.|..++    ++.. +.+  + +
T Consensus        18 ~~m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fKPv~~g~~~~~---~-~~~D~~~~~~~~~~~~~g~~--~-~   90 (242)
T 3qxc_A           18 YFQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVNDAI---N-HSSDAHLFLQDNRLLDRSLT--L-K   90 (242)
T ss_dssp             -CCCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEECCEECSCCTTT---C-CCSHHHHHHHHHHTTCTTCC--H-H
T ss_pred             hhcCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEeeeecCCcccC---C-CCchHHHHHHHHHHHhCCCC--h-H
Confidence            56789999999999999999999999999999999999999998876321   1 12477666    3333 432  2 4


Q ss_pred             ceeeeeecCCCChhhhhhhcCC--CCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcC
Q psy14904         78 LINPYLFKYPISPYTSSNLENR--IINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDL  155 (233)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~  155 (233)
                      +++|+.+..|.+|+.++..++.  ..+.+.+.+.+++++++||+|||||++|+.+|+....+++++++.+++|+|+|++.
T Consensus        91 ~~~p~~~~~p~sp~~aa~~~g~~~~i~~~~I~~~~~~l~~~~D~vlIEGagGl~~pl~~~~~~adlA~~l~~pVILV~~~  170 (242)
T 3qxc_A           91 DISFYRYHKVSAPLIAQQEEDPNAPIDTDNLTQRLHNFTKTYDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLISHD  170 (242)
T ss_dssp             HHCCEECSSSSCHHHHHHHHCTTCCCCHHHHHHHHHHGGGTCSEEEEECCSCTTCBSSSSCBHHHHHHHHTCEEEEEECC
T ss_pred             HeeeEEECCCCChHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCEEEEECCCCccccccccchHHHHHHHcCCCEEEEEcC
Confidence            6788999999999998887777  67889999999999999999999999999999887889999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhh---cCCCceEecCCCC
Q psy14904        156 KIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKY---LNVTPLGRIPYLY  216 (233)
Q Consensus       156 ~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~---~~~pvlg~IP~~~  216 (233)
                      +.++++++..+++.+++.+++ .|+|+|+++ +.....+.....+++.   +..|+++++|+.+
T Consensus       171 ~lg~i~~~~lt~~~l~~~g~~-~GvIlN~v~-~~~~~~~~~~p~le~~~~~~~~~~~~~~~~~~  232 (242)
T 3qxc_A          171 NLGLINDCLLNDFLLKSHQLD-YKIAINLKG-NNTAFHSISLPYIELFNTRSNNPIVIFQQSLK  232 (242)
T ss_dssp             STTHHHHHHHHHHHHHTSSSC-EEEEECCCT-TCCHHHHHTHHHHHHHHHHCSSCCEEGGGCHH
T ss_pred             CCcHHHHHHHHHHHHHhCCCC-EEEEEeCCC-CccchhhhhHHHHHHhcCcccCCceeccccHH
Confidence            999999999999999999999 999999998 5443444445566654   3567777776653

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=99.95  E-value=5.9e-27  Score=218.85  Aligned_cols=203  Identities=23%  Similarity=0.277  Sum_probs=162.5

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHc-----CCeeeEEeeeecCcccCCCCCCccchHHHHHHH-H----------
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKR-----GISCIGMKPIASGAYLNNKNKIWFNEDVNLLNK-Y----------   68 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~-----G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~-~----------   68 (233)
                      +++.|+|+++.+|+|||+++++|+++|+++     |++|.+|||++++++..+        +...+.+ +          
T Consensus        33 ~~~~l~I~gt~s~vGKT~vt~gL~r~l~~~~~~~~G~~V~~fKPv~~g~~~~~--------~~~~~~~~~~~~~~~n~da  104 (831)
T 4a0g_A           33 NHPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLYLKPIQTGFPSDS--------DSRFVFSKLDSLSLRRQIP  104 (831)
T ss_dssp             SSCEEEEEESSSSSCHHHHHHHHHHHHHSCSSCCTTCEEEEEEEEECSTTTCC--------HHHHHHHHHHHHHHHHTCC
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHHHHhcccccCCceEEEEcccccCCCcCc--------chHHHHHhhccccccchhH
Confidence            578999999999999999999999999999     999999999998876532        2211111 1          


Q ss_pred             -----------------hCCCcc----------c-----------ccceeeeeecCCCChhhhhhhcCCCCCHHHHHHHH
Q psy14904         69 -----------------SNSLYE----------F-----------TKLINPYLFKYPISPYTSSNLENRIINTSHIINCY  110 (233)
Q Consensus        69 -----------------~~~~~~----------~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  110 (233)
                                       .+++.+          +           ....+++.+..|.+|++++.+++.....+.+.+.+
T Consensus       105 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~sp~~aa~~~~~~~~~~~i~~~~  184 (831)
T 4a0g_A          105 ISISNSVLHSSLPAAKSLGLNVEVSESGMCSLNFRDEKTVTGAPELLCKTLYAWEAAISPHLAAERENATVEDSVVLQMI  184 (831)
T ss_dssp             CEEEEEEEEEEHHHHHHHTCCCCBCTTSEEEEEEEEEECCTTSCEEEEEEEEECSSSSCHHHHHHHTTCCCCHHHHHHHH
T ss_pred             HHHHHHHcCCChhhHhhcccCCcccCCceEeecccccccccccccccccceeeecCCcCHHHHHHHcCCCCCHHHHHHHH
Confidence                             111110          0           02346777888999999988888877888888888


Q ss_pred             HH-hhc----------CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEE
Q psy14904        111 NY-LSN----------LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIG  179 (233)
Q Consensus       111 ~~-l~~----------~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~G  179 (233)
                      ++ +.+          ++|++||||++|+.+|+....+++|+++.+++|||+|++.++++++++..+.+.++..++++.|
T Consensus       185 ~~~l~~~a~~~~~~~~~~D~vvVEGaGGl~~p~~~~~~~adla~~l~~PVILV~d~~lG~i~~~~lt~~~l~~~g~~v~G  264 (831)
T 4a0g_A          185 EKCLKEEMECGVKSEKSDLLCLVETAGGVASPGPSGTLQCDLYRPFRLPGILVGDGRLGGISGTIAAYESLKLRGYDIAA  264 (831)
T ss_dssp             HHHHHHHC---------CEEEEEECCSSTTCBCTTSCBHHHHTGGGCCCEEEECCCSTTHHHHHHHHHHHHHTTTCCEEE
T ss_pred             HHHHHhhhhccccccccCCEEEEECCCCccCCCCCCccHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHHCCCcEEE
Confidence            77 544          8999999999999999888889999999999999999999999999999999999989999999


Q ss_pred             EEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCC
Q psy14904        180 WVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNL  218 (233)
Q Consensus       180 iVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l  218 (233)
                      +|+|+.. +.  .++...+.+++..++|++|.+|+.+..
T Consensus       265 vI~N~~~-~~--~~~~l~~~l~~~~~v~vLg~lP~~~~~  300 (831)
T 4a0g_A          265 VVFEDHG-LV--NEVPLTSYLRNKVPVLVLPPVPKDPSD  300 (831)
T ss_dssp             EEEECCS-SC--THHHHHHHTTTSSCEEEECCCCCCTTC
T ss_pred             EEEeCCc-hh--HHHHHHHHHHhCCCceeeCCCCCCCHH
Confidence            9999876 32  344556666666677778888886554

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=99.92  E-value=1e-23  Score=172.86  Aligned_cols=196  Identities=10%  Similarity=0.036  Sum_probs=125.4

Q ss_pred             CCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCccc----ccc
Q psy14904          3 NKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEF----TKL   78 (233)
Q Consensus         3 ~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~----~~~   78 (233)
                      .+++++|+|+|+|||+||||+|+|||.+|+++|+||+++|   .+++..         .   +...++.....    .+.
T Consensus        15 ~~~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD---~D~~~~---------~---l~~~l~~~~~~~~~~~~~   79 (262)
T 2ph1_A           15 GKIKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILD---ADFLGP---------S---IPILFGLRNARIAVSAEG   79 (262)
T ss_dssp             TTCSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEE---CCSSCC---------H---HHHHTTCCSCCCEEETTE
T ss_pred             ccCCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEe---CCCCCC---------C---HHHHhcCCCccccccccC
Confidence            3467899999999999999999999999999999999999   333321         0   11122221100    011


Q ss_pred             eeeee------ecCCCChhhhhhhcCC----CCCHHHHHHHHHHhh-cCCCeEEEeccCcccCccCCCCchHHHHHHhCC
Q psy14904         79 INPYL------FKYPISPYTSSNLENR----IINTSHIINCYNYLS-NLTDVIILEGIGGFSVPFHDNENSADLAEKLGL  147 (233)
Q Consensus        79 ~~~~~------~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~l~-~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~  147 (233)
                      +.+..      .-.|.++......+..    ....+.+.+.++.++ +.||||||||||++..+.     ....+.....
T Consensus        80 ~~~~~~~~~~l~vlp~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~ViID~pp~~~~~~-----~~~~~~~~aD  154 (262)
T 2ph1_A           80 LEPVLTQKYGIKVMSMQFLLPKENTPVIWRGPLIAGMIREFLGRVAWGELDHLLIDLPPGTGDAP-----LTVMQDAKPT  154 (262)
T ss_dssp             EECEECTTTCCEEECGGGGSTTCSSCCCCCSHHHHHHHHHHHHSBCCCSCSEEEEECCSSSSSHH-----HHHHHHHCCS
T ss_pred             ccccccCCCCeEEEeccccCCCcccchhhcCchHHHHHHHHHHHhhccCCCEEEEECcCCCchHH-----HHHHhhccCC
Confidence            11111      0001111110000000    011245677777776 789999999998864321     1111211234


Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCc-------hhh-hhhhHHHHHhhcCCCceEecCCCCCCC
Q psy14904        148 PIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVD-------TLF-ANENYIELTKYLNVTPLGRIPYLYNLN  219 (233)
Q Consensus       148 ~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~-------~~~-~~~~~~~l~~~~~~pvlg~IP~~~~l~  219 (233)
                      .+++|+.++..++..+...++.+++.+++++|+|+|+++ +.       ... .....+.+++.+|.|+++.||++..+.
T Consensus       155 ~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~  233 (262)
T 2ph1_A          155 GVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSY-FVCPNCGHKSYIFGEGKGESLAKKYNIGFFTSIPIEEELI  233 (262)
T ss_dssp             EEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCC-EECTTTCCEECTTCCCCHHHHHHHTTCSEEEECCBCHHHH
T ss_pred             eEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCc-cCCcccccccccccccHHHHHHHHcCCCeEEEeeCchHHH
Confidence            688999999888888888888888889999999999986 31       111 133467777788999999999998663

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*

Probab=99.92  E-value=1.5e-23  Score=168.88  Aligned_cols=198  Identities=17%  Similarity=0.143  Sum_probs=125.4

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceee---
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINP---   81 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~---   81 (233)
                      |+++|+|+|+|||+||||+|+|||.+|+++|+||+++|...+...... ..++...... +..+........+.+.+   
T Consensus         1 M~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~-~~~~~~~~~~-l~~~l~~~~~~~~~i~~~~~   78 (237)
T 1g3q_A            1 MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSL-VLGVDDPDVT-LHDVLAGEANVEDAIYMTQF   78 (237)
T ss_dssp             CCEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSCCHHH-HTTCCCCSSC-HHHHHTTSSCGGGGCEECSS
T ss_pred             CceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCCChhH-hcCCCCCCCC-HHHHhcCCCCHHHHhhcCCC
Confidence            468999999999999999999999999999999999993321110000 0011000000 11111111111011100   


Q ss_pred             ---eeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCC
Q psy14904         82 ---YLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIG  158 (233)
Q Consensus        82 ---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~  158 (233)
                         ..+..+..... ...    ...+.+.+.++++++.||+||||||+++..      .... +......+++|+.++..
T Consensus        79 ~~l~~lp~~~~~~~-~~~----~~~~~l~~~l~~l~~~yD~viiD~~~~~~~------~~~~-~~~~ad~vi~v~~~~~~  146 (237)
T 1g3q_A           79 DNVYVLPGAVDWEH-VLK----ADPRKLPEVIKSLKDKFDFILIDCPAGLQL------DAMS-AMLSGEEALLVTNPEIS  146 (237)
T ss_dssp             TTEEEECCCCSHHH-HHH----CCGGGHHHHHHTTGGGCSEEEEECCSSSSH------HHHH-HHTTCSEEEEEECSCHH
T ss_pred             CCEEEEeCCCccch-hhh----cCHHHHHHHHHHHHhcCCEEEEECCCCcCH------HHHH-HHHHCCeEEEEecCCcc
Confidence               01111111111 111    014678888999999999999999987642      1122 22333479999999888


Q ss_pred             cHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCC
Q psy14904        159 CINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLN  219 (233)
Q Consensus       159 ~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~  219 (233)
                      ++.++...++.+++.+.+..|+|+|+++ ++...  ...+.+++.++.|+++.||+++.+.
T Consensus       147 ~~~~~~~~~~~l~~~~~~~~~vv~N~~~-~~~~~--~~~~~~~~~~~~~~~~~Ip~~~~~~  204 (237)
T 1g3q_A          147 CLTDTMKVGIVLKKAGLAILGFVLNRYG-RSDRD--IPPEAAEDVMEVPLLAVIPEDPAIR  204 (237)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEEEEEEET-SCTTC--CCHHHHHHHHCSCEEEEEECCHHHH
T ss_pred             cHHHHHHHHHHHHhCCCceEEEEEecCC-cccch--hHHHHHHHHhCccceeeCCCChHHH
Confidence            8888888888888888899999999998 54322  4456667778999999999987654

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=99.92  E-value=2.9e-24  Score=175.26  Aligned_cols=196  Identities=12%  Similarity=0.093  Sum_probs=123.8

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCC--CCCccchHHHHHHHHhCCCcccc------
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNK--NKIWFNEDVNLLNKYSNSLYEFT------   76 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~--~~~l~~~d~~~~~~~~~~~~~~~------   76 (233)
                      |+++|+|+|+|||+||||+|+|||.+|+++|+||+++|   .+++....  ..++.......+...........      
T Consensus         1 M~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD---~D~~~~~~~~~lg~~~~~~~~l~~~l~~~~~~~~~~~~~   77 (260)
T 3q9l_A            1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVID---FAIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKD   77 (260)
T ss_dssp             -CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE---CCCSSCCHHHHTTCGGGCCSCHHHHHTTSSCHHHHCEEC
T ss_pred             CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEE---CCCCCCChhHHhCCCCcccCCHHHHhcCCCChHHheecc
Confidence            47899999999999999999999999999999999999   33321100  00000000000011110000000      


Q ss_pred             ---cceeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhc-CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEE
Q psy14904         77 ---KLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSN-LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILV  152 (233)
Q Consensus        77 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV  152 (233)
                         +++.  .+  |.+..    .+......+.+.+.++.+++ .||+||||||+++..       ....+......+++|
T Consensus        78 ~~~~~l~--~l--p~~~~----~~~~~~~~~~~~~~l~~l~~~~yD~viiD~p~~~~~-------~~~~~l~~ad~vi~v  142 (260)
T 3q9l_A           78 KRTENLY--IL--PASQT----RDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIET-------GALMALYFADEAIIT  142 (260)
T ss_dssp             SSSTTEE--EE--CCCSC----CCTTSSCHHHHHHHHHHHHHTTCSEEEEECCSSSSH-------HHHHHHHTCSEEEEE
T ss_pred             CCCCCEE--Ee--cCCCc----cchhhCCHHHHHHHHHHHhccCCCEEEEcCCCCCCH-------HHHHHHHhCCEEEEE
Confidence               1111  11  11111    11223456789999999998 999999999987642       122223334578999


Q ss_pred             EcCCCCcHHHHHHHHHHHHhCC--------CcEEEEEEcccCCCchhhhhhh--HHHHHhhcCCCceEecCCCCCCC
Q psy14904        153 IDLKIGCINNALLSLEAINSRG--------LKLIGWVANHTQIVDTLFANEN--YIELTKYLNVTPLGRIPYLYNLN  219 (233)
Q Consensus       153 ~~~~~~~~~~~~~~~~~l~~~~--------~~i~GiVlN~~~~~~~~~~~~~--~~~l~~~~~~pvlg~IP~~~~l~  219 (233)
                      +.++..++..+...++.+++.+        ....|+|+||++ ++.......  .+.+++.++.|+++.||+++.+.
T Consensus       143 ~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Ip~~~~~~  218 (260)
T 3q9l_A          143 TNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYN-PGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVL  218 (260)
T ss_dssp             ECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEEC-HHHHHTTSSCCHHHHHHHHCSEEEEEEECCHHHH
T ss_pred             ecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCC-ccccccccccCHHHHHHHhCCceEEecCCChhHH
Confidence            9998888888877888776443        247899999998 543322222  36777788999999999998654

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=99.91  E-value=2.5e-23  Score=163.93  Aligned_cols=167  Identities=10%  Similarity=0.023  Sum_probs=118.6

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeec
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFK   85 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~   85 (233)
                      ||+|+|+|+|||+||||+|.|||.+|+++|+||+++|   .+++..         ..    .+.+...   ..+..... 
T Consensus         1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD---~D~~~~---------~~----~~~~~~~---~~~~~~~~-   60 (206)
T 4dzz_A            1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVD---TDPQMS---------LT----NWSKAGK---AAFDVFTA-   60 (206)
T ss_dssp             CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEE---CCTTCH---------HH----HHHTTSC---CSSEEEEC-
T ss_pred             CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEE---CCCCCC---------HH----HHHhcCC---CCCcEEec-
Confidence            6899999999999999999999999999999999999   444321         11    1222111   11211111 


Q ss_pred             CCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHH
Q psy14904         86 YPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALL  165 (233)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~  165 (233)
                                      ..+.+.+.+++++++||+|||||||++..      ........ ...+++|+.++..+ ..+..
T Consensus        61 ----------------~~~~l~~~l~~l~~~yD~viiD~~~~~~~------~~~~~l~~-ad~viiv~~~~~~~-~~~~~  116 (206)
T 4dzz_A           61 ----------------ASEKDVYGIRKDLADYDFAIVDGAGSLSV------ITSAAVMV-SDLVIIPVTPSPLD-FSAAG  116 (206)
T ss_dssp             ----------------CSHHHHHTHHHHTTTSSEEEEECCSSSSH------HHHHHHHH-CSEEEEEECSCTTT-HHHHH
T ss_pred             ----------------CcHHHHHHHHHhcCCCCEEEEECCCCCCH------HHHHHHHH-CCEEEEEecCCHHH-HHHHH
Confidence                            11567888889999999999999988632      12222333 34688999998888 77777


Q ss_pred             HHHHHHhC-----CCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce-EecCCCCCCC
Q psy14904        166 SLEAINSR-----GLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL-GRIPYLYNLN  219 (233)
Q Consensus       166 ~~~~l~~~-----~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl-g~IP~~~~l~  219 (233)
                      .++.+++.     +.++ |+|+||++ ++....++..+.+++ ++.|++ +.||++..+.
T Consensus       117 ~~~~l~~~~~~~~~~~~-~vv~N~~~-~~~~~~~~~~~~l~~-~~~~vl~~~Ip~~~~~~  173 (206)
T 4dzz_A          117 SVVTVLEAQAYSRKVEA-RFLITRKI-EMATMLNVLKESIKD-TGVKAFRTAITQRQVYV  173 (206)
T ss_dssp             HHHHHHTTSCGGGCCEE-EEEECSBC-TTEEEEHHHHHHHHH-HTCCBCSSCCBCCHHHH
T ss_pred             HHHHHHHHHHhCCCCcE-EEEEeccC-CCchHHHHHHHHHHH-cCCceeeccccccHHHH
Confidence            77777633     4676 99999998 654444556666665 689999 8899987553

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10

Probab=99.91  E-value=7.2e-23  Score=167.49  Aligned_cols=198  Identities=16%  Similarity=0.122  Sum_probs=123.9

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceee---
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINP---   81 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~---   81 (233)
                      |+++|+|+|+|||+||||+|+|||.+|+++|+||+++|.......... ..++...... +..+........+.+.+   
T Consensus         1 M~~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~-~l~~~~~~~~-l~~~l~~~~~~~~~i~~~~~   78 (263)
T 1hyq_A            1 MVRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLEL-ILGMEGLPVT-LQNVLAGEARIDEAIYVGPG   78 (263)
T ss_dssp             -CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSSSHHH-HTTCCCCCCC-HHHHHTTSSCGGGGCEECGG
T ss_pred             CCeEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCCCCCcch-hcCCCCCCCC-HHHHHcCCCcHHHhheeCCC
Confidence            468999999999999999999999999999999999993321110000 0011000000 11111101111011100   


Q ss_pred             --eeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCc
Q psy14904         82 --YLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGC  159 (233)
Q Consensus        82 --~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~  159 (233)
                        ..+..+...... ..    ...+.+.+.++.+++.||+||||||+++..      ....++.. ...+++|+.++..+
T Consensus        79 ~l~~lp~~~~~~~~-~~----~~~~~l~~~l~~l~~~yD~viiD~~~~~~~------~~~~~~~~-ad~vi~v~~~~~~~  146 (263)
T 1hyq_A           79 GVKVVPAGVSLEGL-RK----ANPEKLEDVLTQIMESTDILLLDAPAGLER------SAVIAIAA-AQELLLVVNPEISS  146 (263)
T ss_dssp             GCEEEECCSCHHHH-HH----HCHHHHHHHHHHHHHTCSEEEEECCSSSSH------HHHHHHHH-SSEEEEEECSSHHH
T ss_pred             CeEEEcCCCCcChh-hc----cChHHHHHHHHHHHhhCCEEEEeCCCCCCh------HHHHHHHH-CCEEEEEeCCChhH
Confidence              011111111111 11    014678888888989999999999987642      12222333 34799999998878


Q ss_pred             HHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCC
Q psy14904        160 INNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLN  219 (233)
Q Consensus       160 ~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~  219 (233)
                      +.++...++.+++.+.+..|+|+|+++ +....  ...+.+++.++.|+++.||+++.+.
T Consensus       147 ~~~~~~~~~~l~~~~~~~~~vv~N~~~-~~~~~--~~~~~~~~~~~~~~~~~Ip~~~~~~  203 (263)
T 1hyq_A          147 ITDGLKTKIVAERLGTKVLGVVVNRIT-TLGIE--MAKNEIEAILEAKVIGLIPEDPEVR  203 (263)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEEEEEEEC-TTTHH--HHHHHHHHHTTSCEEEEEECCHHHH
T ss_pred             HHHHHHHHHHHHhcCCCeeEEEEccCC-ccccc--chHHHHHHHhCCCeEEECCCCHHHH
Confidence            888877888887778899999999998 54322  4566677778999999999987553

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=99.91  E-value=2.9e-23  Score=167.92  Aligned_cols=192  Identities=11%  Similarity=0.054  Sum_probs=123.6

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHHHc-CCeeeEEeeeecCcccCC---CCCCccc--hHHHHHHHHhCCCccc--
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFKKR-GISCIGMKPIASGAYLNN---KNKIWFN--EDVNLLNKYSNSLYEF--   75 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~-G~~Vl~~dp~~~~~~~~~---~~~~l~~--~d~~~~~~~~~~~~~~--   75 (233)
                      +++++|+|+|.|||+||||+|+|||.+|+++ |+||+++|   .+++...   ...+...  .-..++.....+....  
T Consensus         2 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD---~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~   78 (245)
T 3ea0_A            2 NAKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVD---ISLPFGDLDMYLSGNTHSQDLADISNASDRLDKSLLD   78 (245)
T ss_dssp             -CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEE---CCTTTCCGGGGTCSSCCSCCHHHHHHTGGGCCHHHHH
T ss_pred             CCCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEE---CCCCCCCHHHHhCCCCCCCCHHHHHhhHhhhhHHHHH
Confidence            4689999999999999999999999999999 99999999   3333100   0000000  0111121111111000  


Q ss_pred             ------ccceeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCE
Q psy14904         76 ------TKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPI  149 (233)
Q Consensus        76 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~v  149 (233)
                            .+++.  .+  |.........   ....+.+.+.++.+++.||+||||||+++..      ....+.. ....+
T Consensus        79 ~~~~~~~~~l~--~l--~~~~~~~~~~---~~~~~~l~~~l~~l~~~yD~viiD~p~~~~~------~~~~~l~-~ad~v  144 (245)
T 3ea0_A           79 TMVQHISPSLD--LI--PSPATFEKIV---NIEPERVSDLIHIAASFYDYIIVDFGASIDH------VGVWVLE-HLDEL  144 (245)
T ss_dssp             HHSEEEETTEE--EE--CCCSSHHHHH---HCCHHHHHHHHHHHHHHCSEEEEEEESSCCT------THHHHGG-GCSEE
T ss_pred             HHhEecCCCeE--EE--cCCCChHhhh---cCCHHHHHHHHHHHHhhCCEEEEeCCCCCch------HHHHHHH-HCCEE
Confidence                  01111  11  2222221110   1345788999999999999999999988642      1122222 23468


Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhCC--CcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCC
Q psy14904        150 ILVIDLKIGCINNALLSLEAINSRG--LKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLY  216 (233)
Q Consensus       150 llV~~~~~~~~~~~~~~~~~l~~~~--~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~  216 (233)
                      ++|+.++..++..+...++.+++.+  .+..|+|+||++ ++...   ..+.+++.+|.|+++.||++.
T Consensus       145 iiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~-~~~~~---~~~~~~~~~~~~v~~~ip~~~  209 (245)
T 3ea0_A          145 CIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRAD-TNSRI---TSDEIEKVIGRPISKRIPQDE  209 (245)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTT-SCTTS---CHHHHHHHHTSCEEEEECCCH
T ss_pred             EEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCC-CCCCC---CHHHHHHHhCCCeEEECCCCh
Confidence            9999998878888888888887655  677999999998 54322   236777788999999999986

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=99.91  E-value=1.1e-23  Score=172.10  Aligned_cols=200  Identities=13%  Similarity=0.155  Sum_probs=117.8

Q ss_pred             CCCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCC-CCCCccchHHHHHHHHhCCCcccccce
Q psy14904          1 MINKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNN-KNKIWFNEDVNLLNKYSNSLYEFTKLI   79 (233)
Q Consensus         1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~~~~~~~   79 (233)
                      |..+++++|+|+|+|||+||||+|+|||.+|+++|+||+++|   .+++..- ...++.. +..+.....+.  +..+.+
T Consensus         1 m~~~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD---~D~~~~~~~~l~~~~-~~~l~~~l~~~--~~~~~i   74 (257)
T 1wcv_1            1 MLRAKVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVD---LDPQGNATSGLGVRA-ERGVYHLLQGE--PLEGLV   74 (257)
T ss_dssp             ----CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEE---CCTTCHHHHHTTCCC-SCCHHHHHTTC--CGGGTC
T ss_pred             CCCCCCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEE---CCCCcCHHHHhCCCC-CCCHHHHHcCC--CHHHHc
Confidence            788899999999999999999999999999999999999998   3332100 0000000 00000000111  110111


Q ss_pred             ee--eeecCCCChhhhh---hhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEc
Q psy14904         80 NP--YLFKYPISPYTSS---NLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVID  154 (233)
Q Consensus        80 ~~--~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~  154 (233)
                      .+  ...-.|.++.+..   .....   .+.+.+.+++  ++||+|||||||++...      ....... ...+++|+.
T Consensus        75 ~~~~~l~vlp~~~~~~~~~~~l~~~---~~~l~~~l~~--~~yD~iiiD~pp~~~~~------~~~~l~~-aD~viiv~~  142 (257)
T 1wcv_1           75 HPVDGFHLLPATPDLVGATVELAGA---PTALREALRD--EGYDLVLLDAPPSLSPL------TLNALAA-AEGVVVPVQ  142 (257)
T ss_dssp             EEETTEEEECCCTTHHHHHHHHTTC---TTHHHHHCCC--TTCSEEEEECCSSCCHH------HHHHHHH-CSEEEEEEE
T ss_pred             cccCCEEEEeCChhHHHHHHHHhhH---HHHHHHHhcc--cCCCEEEEeCCCCCCHH------HHHHHHH-CCeEEEEec
Confidence            10  0011122222211   11010   0456666655  78999999999886421      1222222 347899999


Q ss_pred             CCCCcHHHHHHHHHHH---H---hCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce-EecCCCCCCC
Q psy14904        155 LKIGCINNALLSLEAI---N---SRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL-GRIPYLYNLN  219 (233)
Q Consensus       155 ~~~~~~~~~~~~~~~l---~---~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl-g~IP~~~~l~  219 (233)
                      ++..++..+...++.+   +   +.+++++|+|+|+++ ++....++..+.+++.++.+++ +.||++..+.
T Consensus       143 ~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~-~~~~~~~~~~~~l~~~~~~~~~~~~Ip~~~~~~  213 (257)
T 1wcv_1          143 AEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYD-GRTLLAQQVEAQLRAHFGEKVFWTVIPRNVRLA  213 (257)
T ss_dssp             SSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBC-TTCSHHHHHHHHHHHHHGGGBCSCCCBCCHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeEC-CCcHHHHHHHHHHHHHccccccCccCCCcHHHH
Confidence            9877766544444443   3   357888999999998 5544455677888888888887 7899987553

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=99.90  E-value=7e-23  Score=168.05  Aligned_cols=203  Identities=12%  Similarity=-0.032  Sum_probs=117.4

Q ss_pred             CCCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCC--CC------CCccchHHHHHHHHhCCC
Q psy14904          1 MINKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNN--KN------KIWFNEDVNLLNKYSNSL   72 (233)
Q Consensus         1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~--~~------~~l~~~d~~~~~~~~~~~   72 (233)
                      |..+++++|+|+|.|||+||||+|+|||.+|+ +|+||+++|   .+++...  ..      .++...... +.......
T Consensus        22 ~~~~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD---~D~~~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~   96 (267)
T 3k9g_A           22 MDNKKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLID---MDTQASITSYFYEKIEKLGINFTKFN-IYEILKEN   96 (267)
T ss_dssp             ----CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEE---ECTTCHHHHHTHHHHHHTTCCTTTSS-HHHHHTTS
T ss_pred             CCCCCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEE---CCCCCCHHHHhhccccccccCccccc-HHHHhcCC
Confidence            44567899999999999999999999999999 999999999   3333210  00      000000000 01111101


Q ss_pred             cccccceeee---eecCCCChhhhhh-hcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCC
Q psy14904         73 YEFTKLINPY---LFKYPISPYTSSN-LENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLP  148 (233)
Q Consensus        73 ~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~  148 (233)
                      ....+.+...   ..-.|.+..+... ..........+.+.++.+++.||+||||||+++...      ...... ....
T Consensus        97 ~~~~~~i~~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~viiD~pp~~~~~------~~~~l~-~aD~  169 (267)
T 3k9g_A           97 VDIDSTIINVDNNLDLIPSYLTLHNFSEDKIEHKDFLLKTSLGTLYYKYDYIVIDTNPSLDVT------LKNALL-CSDY  169 (267)
T ss_dssp             SCGGGGCEEEETTEEEECCCGGGGGTTTCCCTTGGGHHHHHHHTTCTTCSEEEEEECSSCSHH------HHHHHT-TCSE
T ss_pred             CCHHHhhccCCCCEEEEeCChHHHHHHHhhhhhHHHHHHHHHHHhhcCCCEEEEECcCCccHH------HHHHHH-HCCe
Confidence            1110111110   0111222222110 001112356789999999999999999999876321      111112 2346


Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhC--CCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCCh
Q psy14904        149 IILVIDLKIGCINNALLSLEAINSR--GLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNI  220 (233)
Q Consensus       149 vllV~~~~~~~~~~~~~~~~~l~~~--~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~  220 (233)
                      +++|+.++..++..+...++.+++.  +.+ +++|+||+. . ....++..+.+++  +.++++.||+++.+..
T Consensus       170 vivv~~~~~~s~~~~~~~~~~l~~~~~~~~-~~vv~N~~~-~-~~~~~~~~~~l~~--~~~~~~~Ip~~~~~~~  238 (267)
T 3k9g_A          170 VIIPMTAEKWAVESLDLFNFFVRKLNLFLP-IFLIITRFK-K-NRTHKTLFEILKT--KDRFLGTISEREDLNR  238 (267)
T ss_dssp             EEEEEESCTTHHHHHHHHHHHHHTTTCCCC-EEEEEEEEC-T-TCSCCHHHHHHTT--STTEEEEEEC------
T ss_pred             EEEEeCCChHHHHHHHHHHHHHHHHhccCC-EEEEEeccc-C-cchHHHHHHHHhc--CcccceecCcHHHHHH
Confidence            8999999888888777777777755  345 469999996 3 2334566677765  7899999999998773

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=99.89  E-value=1.3e-21  Score=160.98  Aligned_cols=167  Identities=20%  Similarity=0.214  Sum_probs=108.9

Q ss_pred             CCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccc--hHHHHHHHHhCCCcccc----
Q psy14904          3 NKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFN--EDVNLLNKYSNSLYEFT----   76 (233)
Q Consensus         3 ~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~--~d~~~~~~~~~~~~~~~----   76 (233)
                      .+++++|+|+|+|||+||||+|+|||.+|++.|+||+++|.....+.... ..++.+  .-..++   .+ ...+.    
T Consensus        79 ~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~~l~~-~~~~~~~~gl~~~L---~~-~~~l~~~i~  153 (271)
T 3bfv_A           79 DSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHY-IFNLPNNEGLSSLL---LN-WSTYQDSII  153 (271)
T ss_dssp             TCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSCCHHH-HTTCCCSSSHHHHH---TT-SSCHHHHEE
T ss_pred             CCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCccHHH-HcCCCCCCCHHHHh---CC-CCCHHHcEE
Confidence            45789999999999999999999999999999999999993221111000 000000  001111   11 00110    


Q ss_pred             ----cceeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEE
Q psy14904         77 ----KLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILV  152 (233)
Q Consensus        77 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV  152 (233)
                          +++.- ....+..++... +    ...+++.+.++++++.||+|||||||.+..     .....++...+ .+++|
T Consensus       154 ~~~~~~l~v-l~~g~~~~~~~e-l----l~~~~l~~ll~~l~~~yD~VIIDtpp~~~~-----~d~~~l~~~aD-~vilV  221 (271)
T 3bfv_A          154 STEIEDLDV-LTSGPIPPNPSE-L----ITSRAFANLYDTLLMNYNFVIIDTPPVNTV-----TDAQLFSKFTG-NVVYV  221 (271)
T ss_dssp             ECSSTTEEE-ECCCSCCSCHHH-H----HTSHHHHHHHHHHHHHCSEEEEECCCTTTC-----SHHHHHHHHHC-EEEEE
T ss_pred             eCCCCCEEE-EECCCCCCCHHH-H----hChHHHHHHHHHHHhCCCEEEEeCCCCchH-----HHHHHHHHHCC-EEEEE
Confidence                11211 111111122211 1    123678889999999999999999976532     12233444444 79999


Q ss_pred             EcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904        153 IDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ  186 (233)
Q Consensus       153 ~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~  186 (233)
                      +.++..+...+...++.+++.+.+++|+|+|+++
T Consensus       222 v~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~  255 (271)
T 3bfv_A          222 VNSENNNKDEVKKGKELIEATGAKLLGVVLNRMP  255 (271)
T ss_dssp             EETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEEC
T ss_pred             EeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCc
Confidence            9999999999999999999899999999999998

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}

Probab=99.89  E-value=8.5e-22  Score=163.30  Aligned_cols=171  Identities=13%  Similarity=0.144  Sum_probs=111.9

Q ss_pred             CCCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCC--CCCccc--hHHHHHHHHhCCCccc-
Q psy14904          1 MINKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNK--NKIWFN--EDVNLLNKYSNSLYEF-   75 (233)
Q Consensus         1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~--~~~l~~--~d~~~~~~~~~~~~~~-   75 (233)
                      |..++.++|+|+|.|||+||||+|+|||..|++.|+||+++|   .++.....  .-++.+  .-..++.....+...+ 
T Consensus        87 ~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID---~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~  163 (286)
T 3la6_A           87 MMQAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLID---CDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAK  163 (286)
T ss_dssp             STTTTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEE---CCTTTCCHHHHHTCCCTTCHHHHHHTSSCTTTTCE
T ss_pred             ccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEe---ccCCCCCHHHHhCCCCCCCHHHHccCCCCHHHhee
Confidence            345678999999999999999999999999999999999999   33321100  000000  0111121111111100 


Q ss_pred             ---ccceeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEE
Q psy14904         76 ---TKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILV  152 (233)
Q Consensus        76 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV  152 (233)
                         ..++.. ....+..++... +    +..+++.+.++++++.||+|||||||.+..      ..+..+......+++|
T Consensus       164 ~~~~~~l~v-l~~g~~~~~~~e-l----l~~~~l~~ll~~l~~~yD~VIIDtpp~~~~------~da~~l~~~aD~vllV  231 (286)
T 3la6_A          164 PTSIAKFDL-IPRGQVPPNPSE-L----LMSERFAELVNWASKNYDLVLIDTPPILAV------TDAAIVGRHVGTTLMV  231 (286)
T ss_dssp             ECSSTTEEE-ECCCSCCSCHHH-H----HTSHHHHHHHHHHHHHCSEEEEECCCTTTC------THHHHHTTTCSEEEEE
T ss_pred             ccCCCCEEE-EeCCCCCCCHHH-H----hchHHHHHHHHHHHhCCCEEEEcCCCCcch------HHHHHHHHHCCeEEEE
Confidence               011111 111111112211 1    234788999999999999999999977532      2333344444579999


Q ss_pred             EcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904        153 IDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ  186 (233)
Q Consensus       153 ~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~  186 (233)
                      +.++..+...+...++.+++.+.+++|+|+|+++
T Consensus       232 v~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~  265 (286)
T 3la6_A          232 ARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIF  265 (286)
T ss_dssp             EETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEEC
T ss_pred             EeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCcc
Confidence            9999999999989999999999999999999998

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=99.88  E-value=1.2e-21  Score=163.38  Aligned_cols=168  Identities=16%  Similarity=0.213  Sum_probs=109.8

Q ss_pred             CCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCC--CCCccchHHHHHHHHhCCCcccc---
Q psy14904          2 INKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNK--NKIWFNEDVNLLNKYSNSLYEFT---   76 (233)
Q Consensus         2 ~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~--~~~l~~~d~~~~~~~~~~~~~~~---   76 (233)
                      ..+++++|+|+|+|||+||||+|+|||.+|++.|+||+++|   .++.....  .-++.+.. . +........+..   
T Consensus       100 ~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID---~D~r~~~l~~~~~~~~~~-g-l~~~L~~~~~l~~~i  174 (299)
T 3cio_A          100 METENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFID---ADLRRGYSHNLFTVSNEH-G-LSEYLAGKDELNKVI  174 (299)
T ss_dssp             SSCSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEE---CCTTTCCHHHHTTCCCSS-S-HHHHHTTSSCHHHHC
T ss_pred             cCCCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEE---CCCCCccHHHHcCCCCCC-C-HHHHCcCCCCHHHhh
Confidence            34568999999999999999999999999999999999999   33321000  00000000 0 011110000110   


Q ss_pred             -----cceeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEE
Q psy14904         77 -----KLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIIL  151 (233)
Q Consensus        77 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vll  151 (233)
                           +++.- ....+..++.. ++    +..+++.+.++++++.||+|||||||.+..      ..+.++......+++
T Consensus       175 ~~~~~~~l~v-l~~g~~~~~~~-el----l~~~~l~~ll~~l~~~yD~VIIDtpp~~~~------~d~~~l~~~ad~vil  242 (299)
T 3cio_A          175 QHFGKGGFDV-ITRGQVPPNPS-EL----LMRDRMRQLLEWANDHYDLVIVDTPPMLAV------SDAAVVGRSVGTSLL  242 (299)
T ss_dssp             EEETTTTEEE-ECCCSCCSCHH-HH----HTSHHHHHHHHHHHHHCSEEEEECCCTTTC------THHHHHGGGCSEEEE
T ss_pred             hccCCCCEEE-EECCCCCCCHH-HH----hCHHHHHHHHHHHHhCCCEEEEcCCCCchh------HHHHHHHHHCCEEEE
Confidence                 11211 11111111111 11    134678899999999999999999987532      234444444567999


Q ss_pred             EEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904        152 VIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ  186 (233)
Q Consensus       152 V~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~  186 (233)
                      |+.++..+..++...++.+++.+.+++|+|+|+++
T Consensus       243 V~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~  277 (299)
T 3cio_A          243 VARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVI  277 (299)
T ss_dssp             EEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECC
T ss_pred             EEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCc
Confidence            99999888888888999999899999999999998

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=99.88  E-value=1.1e-21  Score=163.44  Aligned_cols=205  Identities=15%  Similarity=0.056  Sum_probs=120.3

Q ss_pred             CceeEEEEe--CCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcc--cCCCCCCcc--chH-HHHHHHHhCCCccccc
Q psy14904          5 NFLHYFITG--TNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAY--LNNKNKIWF--NED-VNLLNKYSNSLYEFTK   77 (233)
Q Consensus         5 ~~~~i~i~~--~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~--~~~~~~~l~--~~d-~~~~~~~~~~~~~~~~   77 (233)
                      +.++|+|+|  .|||+||||+|+|||.+|+++|+||+++|...++..  ......+..  ... ...+... .....+ .
T Consensus        33 ~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~~~~~~l~~~~~~~~~~~~l~~~l~~~-~~~~~~-~  110 (298)
T 2oze_A           33 KNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLTKDLAKTFKVELPRVNFYEGLKNG-NLASSI-V  110 (298)
T ss_dssp             HCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTTTSCCCCCSSCHHHHHHHT-CCGGGC-E
T ss_pred             CCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHhccCCCCcccHHHHHhcC-Chhhhh-c
Confidence            356899999  899999999999999999999999999983222110  000000000  000 1111110 110000 0


Q ss_pred             ceeeeeecCCCChhhhh--hhcCC-C--CCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEE
Q psy14904         78 LINPYLFKYPISPYTSS--NLENR-I--INTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILV  152 (233)
Q Consensus        78 ~~~~~~~~~~~~~~~~~--~~~~~-~--~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV  152 (233)
                      ...+...-.|.+..+..  ..... .  ...+.+.+.++.+++.||+|||||||++...     ....+. . ...+++|
T Consensus       111 ~~~~~l~vlp~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~l~~~yD~IiiD~pp~~~~~-----~~~~l~-~-aD~viiv  183 (298)
T 2oze_A          111 HLTDNLDLIPGTFDLMLLPKLTRSWTFENESRLLATLLAPLKSDYDLIIIDTVPTPSVY-----TNNAIV-A-SDYVMIP  183 (298)
T ss_dssp             ESSSSEEEECCCGGGGGHHHHTTTSCHHHHHTHHHHHHGGGGGGCSEEEEEECSSCSHH-----HHHHHH-H-CSEEEEE
T ss_pred             ccCCCeEEEeCCchHHHHHHHhhhhccccHHHHHHHHHHHHhcCCCEEEEECCCCccHH-----HHHHHH-H-CCeEEEE
Confidence            00000111122332221  11000 0  0124588888889999999999999886421     122232 2 3468899


Q ss_pred             EcCCCCcHHHHHHHHHHHH------hCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCC--Cce-EecCCCCCCC
Q psy14904        153 IDLKIGCINNALLSLEAIN------SRGLKLIGWVANHTQIVDTLFANENYIELTKYLNV--TPL-GRIPYLYNLN  219 (233)
Q Consensus       153 ~~~~~~~~~~~~~~~~~l~------~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~--pvl-g~IP~~~~l~  219 (233)
                      +.++..++..+...++.++      +.+++++|+|+|+++ ++.....+..+.+.+.++.  +++ +.||++..+.
T Consensus       184 ~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~Ip~~~~~~  258 (298)
T 2oze_A          184 LQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVD-TDSATIKSNLEELYKQHKEDNLVFQNIIKRSNKVS  258 (298)
T ss_dssp             ECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESC-TTCHHHHHHHHHHHHHTTTTCCBCSSCEECCHHHH
T ss_pred             ecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEEC-CCcHHHHHHHHHHHHHhccccccccccccccHHHH
Confidence            9988877776655555554      258899999999998 5544445667777777775  777 5788876543

>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A

Probab=99.87  E-value=2e-21  Score=161.23  Aligned_cols=200  Identities=14%  Similarity=0.103  Sum_probs=110.9

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCC--CCCcc-chH-HHHHHHHhCC-Cccc-----
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNK--NKIWF-NED-VNLLNKYSNS-LYEF-----   75 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~--~~~l~-~~d-~~~~~~~~~~-~~~~-----   75 (233)
                      |++|+|+ +|||+||||+|+|||.+|+++|+||+++|   .+++....  ..+.. ... ..++...... ....     
T Consensus         2 MkvIavs-~KGGvGKTT~a~nLA~~La~~G~rVlliD---~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~   77 (289)
T 2afh_E            2 MRQCAIY-GKGGIGKSTTTQNLVAALAEMGKKVMIVG---CDPKADSTRLILHSKAQNTIMEMAAEAGTVEDLELEDVLK   77 (289)
T ss_dssp             CEEEEEE-ECTTSSHHHHHHHHHHHHHHTTCCEEEEE---ECSSSCSSHHHHCCSSCCBHHHHHHTTSSGGGCCHHHHCE
T ss_pred             ceEEEEe-CCCcCcHHHHHHHHHHHHHHCCCeEEEEe---cCCCCCHHHHhcCCCCCCcHHHHHhcccccccCCHHHhhc
Confidence            6899995 69999999999999999999999999998   33332110  00000 000 0111110000 0000     


Q ss_pred             --ccceeeeeecCCCChhhhhhhcCCC-CCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEE
Q psy14904         76 --TKLINPYLFKYPISPYTSSNLENRI-INTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILV  152 (233)
Q Consensus        76 --~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV  152 (233)
                        ..++.......+ .+....  .... .....+.+.++.++++|||||||||+.+..   ..+ .+.+.......+++|
T Consensus        78 ~~~~~l~~l~~~~~-~~~~~~--~~~~~~~~~~l~~~l~~l~~~yD~ViID~~~~~~~---~~~-~~~~~~~~aD~viiv  150 (289)
T 2afh_E           78 AGYGGVKCVESGGP-EPGVGC--AGRGVITAINFLEEEGAYEDDLDFVFYDVLGDVVC---GGF-AMPIRENKAQEIYIV  150 (289)
T ss_dssp             ECGGGCEEEECCCC-CTTTCC--HHHHHHHHHHHHHHTTCSSTTCSEEEEEEECSSCC---TTT-THHHHTTCCCEEEEE
T ss_pred             cCCCCeEEEeCCCc-cccccc--cchhhhHHHHHHHHHHhhccCCCEEEEeCCCcccc---chh-hhhhhhhhCCEEEEE
Confidence              011111110000 000000  0000 000123333444567899999999876431   111 122222233468899


Q ss_pred             EcCCCCcHHHHHHHHHHHH----hCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCC
Q psy14904        153 IDLKIGCINNALLSLEAIN----SRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLN  219 (233)
Q Consensus       153 ~~~~~~~~~~~~~~~~~l~----~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~  219 (233)
                      +.++..++..+...++.++    +.+.++.|+|+|+++ ..  ...+..+.+++.++.++++.||++..+.
T Consensus       151 ~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~-~~--~~~~~~~~l~~~~g~~~l~~Ip~~~~~~  218 (289)
T 2afh_E          151 CSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRN-TD--REDELIIALANKLGTQMIHFVPRDNVVQ  218 (289)
T ss_dssp             ECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCC-CT--THHHHHHHHHHHHTSCEEEEECCCHHHH
T ss_pred             ecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCC-ch--hHHHHHHHHHHHcCccccccCCCchhHH
Confidence            9988777665554444443    247888999999997 42  2345677777778999999999987654

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=99.87  E-value=8e-21  Score=150.59  Aligned_cols=161  Identities=9%  Similarity=0.044  Sum_probs=111.3

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeecC
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFKY   86 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~   86 (233)
                      ++|+|+|+|||+||||+|.|||.+|+++| ||+++|   .+++..         ...++..  .      + +....+. 
T Consensus         1 kvI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD---~D~q~~---------~~~~~~~--~------~-l~~~vi~-   57 (209)
T 3cwq_A            1 MIITVASFKGGVGKTTTAVHLSAYLALQG-ETLLID---GDPNRS---------ATGWGKR--G------S-LPFKVVD-   57 (209)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEE---ECTTCH---------HHHHHHH--S------C-CSSEEEE-
T ss_pred             CEEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEE---CCCCCC---------HHHHhcC--C------C-CCcceeC-
Confidence            47999999999999999999999999999 999999   444421         1222222  1      1 1000010 


Q ss_pred             CCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHH
Q psy14904         87 PISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLS  166 (233)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~  166 (233)
                                      .+    .++++++.||+|||||||++..+     ........ ..-+++++.++..++..+...
T Consensus        58 ----------------~~----~l~~l~~~yD~viiD~p~~~~~~-----~~~~~l~~-aD~viiv~~~~~~~~~~~~~~  111 (209)
T 3cwq_A           58 ----------------ER----QAAKYAPKYQNIVIDTQARPEDE-----DLEALADG-CDLLVIPSTPDALALDALMLT  111 (209)
T ss_dssp             ----------------GG----GHHHHGGGCSEEEEEEECCCSSS-----HHHHHHHT-SSEEEEEECSSHHHHHHHHHH
T ss_pred             ----------------HH----HHHHhhhcCCEEEEeCCCCcCcH-----HHHHHHHH-CCEEEEEecCCchhHHHHHHH
Confidence                            01    34566789999999999883221     11222222 346888899888788877777


Q ss_pred             HHHHHh-CCCcEEEEEEcccCCCch-hhhhhhHHHHHhhcCCCce-EecCCCCCCC
Q psy14904        167 LEAINS-RGLKLIGWVANHTQIVDT-LFANENYIELTKYLNVTPL-GRIPYLYNLN  219 (233)
Q Consensus       167 ~~~l~~-~~~~i~GiVlN~~~~~~~-~~~~~~~~~l~~~~~~pvl-g~IP~~~~l~  219 (233)
                      ++.+++ .+.+ .|+|+||++ ++. ...++..+.+++ +|.|++ +.||+++.+.
T Consensus       112 ~~~l~~~~~~~-~~vv~N~~~-~~~~~~~~~~~~~l~~-~g~~v~~~~Ip~~~~~~  164 (209)
T 3cwq_A          112 IETLQKLGNNR-FRILLTIIP-PYPSKDGDEARQLLTT-AGLPLFKRGIKRYSAFQ  164 (209)
T ss_dssp             HHHHHHTCSSS-EEEEECSBC-CTTSCHHHHHHHHHHH-TTCCBCSSCCBCCTHHH
T ss_pred             HHHHHhccCCC-EEEEEEecC-CccchHHHHHHHHHHH-cCCchhhccCCCcHHHH
Confidence            887776 3667 899999998 554 444566677776 799999 7899987544

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=99.86  E-value=1.6e-21  Score=160.00  Aligned_cols=199  Identities=15%  Similarity=0.084  Sum_probs=112.9

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCC--CCCcc-c-hHHHHHHHHh---CCC----cc
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNK--NKIWF-N-EDVNLLNKYS---NSL----YE   74 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~--~~~l~-~-~d~~~~~~~~---~~~----~~   74 (233)
                      |++|+| +.|||+||||+|+|||.+|+++|+||+++|   .+++....  ..+.. . .-..++....   .+.    ..
T Consensus         1 M~vI~v-s~KGGvGKTT~a~nLA~~la~~G~~VlliD---~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~   76 (269)
T 1cp2_A            1 MRQVAI-YGKGGIGKSTTTQNLTSGLHAMGKTIMVVG---CDPKADSTRLLLGGLAQKSVLDTLREEGEDVELDSILKEG   76 (269)
T ss_dssp             CEEEEE-EECTTSSHHHHHHHHHHHHHTTTCCEEEEE---ECTTSCSSHHHHTSCCCCCHHHHHHHHGGGCCHHHHCEEC
T ss_pred             CcEEEE-ecCCCCcHHHHHHHHHHHHHHCCCcEEEEc---CCCCCCHHHHhcCCCCcccHHHHHhccCcCCCHHHhhccC
Confidence            588999 469999999999999999999999999998   33332110  00000 0 0011121110   000    00


Q ss_pred             cccceeeeeecCCCChhhhhhhcCCC-CCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEE
Q psy14904         75 FTKLINPYLFKYPISPYTSSNLENRI-INTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVI  153 (233)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~  153 (233)
                      . .++.-.....+. +...  ..... .....+.+.+++++++|||||||||+++..   .. ..+.++......+++|+
T Consensus        77 ~-~~l~vl~~~~~~-~~~~--~~~~~~~~~~~~~~~l~~l~~~yD~iiiD~~~~~~~---~~-~~~~~~~~~aD~viiv~  148 (269)
T 1cp2_A           77 Y-GGIRCVESGGPE-PGVG--CAGRGIITSINMLEQLGAYTDDLDYVFYDVLGDVVC---GG-FAMPIREGKAQEIYIVA  148 (269)
T ss_dssp             G-GGCEEEECCCCC-TTSS--CHHHHHHHHHHHHHHTTCCCTTCSEEEEEEECSSCS---TT-TTHHHHTTSCCEEEEEE
T ss_pred             C-CCeeEEeCCCch-hhcc--ccCcchhhHHHHHHHHHhhccCCCEEEEeCCchhhh---hh-hhhhhhHhhCCEEEEee
Confidence            0 111111111000 0000  00000 001123344455567899999999876532   11 12223222345789999


Q ss_pred             cCCCCcHHHHHHHHHHHHh----CCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCC
Q psy14904        154 DLKIGCINNALLSLEAINS----RGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLN  219 (233)
Q Consensus       154 ~~~~~~~~~~~~~~~~l~~----~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~  219 (233)
                      .++..++..+...++.+++    .+++++|+|+|+++ +.  ...+..+.+++.+|.++++.||++..+.
T Consensus       149 ~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~-~~--~~~~~~~~l~~~~~~~v~~~Ip~~~~~~  215 (269)
T 1cp2_A          149 SGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRK-VA--NEYELLDAFAKELGSQLIHFVPRSPMVT  215 (269)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCS-SS--CCHHHHHHHHHHHTCCEEEEECCCHHHH
T ss_pred             cCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCC-cc--hhHHHHHHHHHHcCCcccccCCCCcHHH
Confidence            9987777666555555542    36788999999997 42  2345677787788999999999997554

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=99.86  E-value=2.1e-21  Score=157.18  Aligned_cols=194  Identities=15%  Similarity=0.082  Sum_probs=113.6

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCC-CCCCccchH----------HHHHHHHhCCCccc--
Q psy14904          9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNN-KNKIWFNED----------VNLLNKYSNSLYEF--   75 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~-~~~~l~~~d----------~~~~~~~~~~~~~~--   75 (233)
                      |+| |.|||+||||+|+|||.+|+++|+||+++|   .+++..- ..-++....          ...+........-+  
T Consensus         3 I~v-s~kGGvGKTt~a~~LA~~la~~g~~VlliD---~D~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (254)
T 3kjh_A            3 LAV-AGKGGVGKTTVAAGLIKIMASDYDKIYAVD---GDPDSCLGQTLGLSIEEAYAITPLIEMKDEIREKTGDGGLLIL   78 (254)
T ss_dssp             EEE-ECSSSHHHHHHHHHHHHHHTTTCSCEEEEE---ECTTSCHHHHTTCCHHHHHTSCCGGGCHHHHHHHHCSSSCCCS
T ss_pred             EEE-ecCCCCCHHHHHHHHHHHHHHCCCeEEEEe---CCCCcChHHHhCCCcccccccccchhHHHHHHhhccCCccccc
Confidence            788 679999999999999999999999999999   3333100 000111000          01111111000000  


Q ss_pred             ccceeeeeec---CCCChh--hhhh---hcCCCC-CH--HHHHHHHHHh-hcCCCeEEEeccCcccCccCCCCchHHHHH
Q psy14904         76 TKLINPYLFK---YPISPY--TSSN---LENRII-NT--SHIINCYNYL-SNLTDVIILEGIGGFSVPFHDNENSADLAE  143 (233)
Q Consensus        76 ~~~~~~~~~~---~~~~~~--~~~~---~~~~~~-~~--~~l~~~~~~l-~~~~D~vlID~~~g~~~p~~~~~~~~~l~~  143 (233)
                      ..++......   .+....  +...   ...... ..  ..+.+.++++ ++.||+|||||||++..     .... .. 
T Consensus        79 ~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~viiD~pp~~~~-----~~~~-~l-  151 (254)
T 3kjh_A           79 NPKVDGDLDKYGRYIDDKIFLIRMGEIKKGGSQCYCRENSFLGSVVSALFLDKKEAVVMDMGAGIEH-----LTRG-TA-  151 (254)
T ss_dssp             SCCCTTSGGGSSEESSSSEEEEECCCCCCCCSSCCHHHHHHHHHHHHHHHHTCCSEEEEEECTTCTT-----CCHH-HH-
T ss_pred             CCchhccHHhcccccCCeEEEEEecccccCCCCCCcchHHHHHHHHHHhccCCCCEEEEeCCCcccH-----HHHH-HH-
Confidence            0000000000   000000  0000   000011 11  4589999998 89999999999988643     1122 22 


Q ss_pred             HhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcC-CCceEecCCCCCCC
Q psy14904        144 KLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLN-VTPLGRIPYLYNLN  219 (233)
Q Consensus       144 ~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~-~pvlg~IP~~~~l~  219 (233)
                      .....+++|+.++..++..+....+.+++.+.+.+|+|+||++ ++     ...+.+++.++ .++.+.||+++.+.
T Consensus       152 ~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~-~~-----~~~~~~~~~~~~~~~~~~Ip~~~~~~  222 (254)
T 3kjh_A          152 KAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVR-NI-----KEEKLIKKHLPEDKILGIIPYNELFI  222 (254)
T ss_dssp             TTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEEC-CH-----HHHHHHHHHSCGGGEEEEEECCHHHH
T ss_pred             HHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCC-Ch-----hHHHHHHHHhcCCcccccccCcHHHH
Confidence            2234689999998877777777777777777788999999998 42     23455666776 78889999987543

>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A

Probab=99.86  E-value=1.9e-21  Score=161.27  Aligned_cols=194  Identities=8%  Similarity=-0.011  Sum_probs=111.8

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCc-ccCCCCCCccchHHHHHHHHhCCCcccccceeeee
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGA-YLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYL   83 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~-~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~   83 (233)
                      |+++|+|+|+|||+||||+|.|||.+|+++|+||+++|   .++ +..-  ..+...+..+... .+...+  ..+.   
T Consensus         3 M~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD---~D~~q~~l--~~~l~~~~~~~~~-~~~~~~--~~l~---   71 (286)
T 2xj4_A            3 ETRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVID---LDLRQRTS--ARFFENRRAWLDN-KKIELP--EPLA---   71 (286)
T ss_dssp             -CEEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEE---CCTTTCHH--HHHHHHHHHHHHH-HTCCCC--CCEE---
T ss_pred             CCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEE---CCCCCCCH--HHHhCCChhHhHh-ccccCC--Cchh---
Confidence            57899999999999999999999999999999999999   444 2100  0000001111111 111100  1110   


Q ss_pred             ecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHH
Q psy14904         84 FKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNA  163 (233)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~  163 (233)
                      .-.|..+.. ..........+.+.+.+++++++||||||||||++..      .... +......+++|+.++..++..+
T Consensus        72 ~vl~~~~~~-~~~~~~~~~~~~l~~~l~~l~~~yD~viiD~p~~~~~------~~~~-~l~~aD~viiv~~~~~~~~~~~  143 (286)
T 2xj4_A           72 LNLSDNDVA-LAERPEEEQVAGFEAAFARAMAECDFILIDTPGGDSA------ITRM-AHGRADLVVTPMNDSFVDFDML  143 (286)
T ss_dssp             ECSSSCHHH-HTTSCHHHHHHHHHHHHHHHHHHCSEEEEECCSSCCH------HHHH-HHHTCSEEEEEEESSHHHHTTT
T ss_pred             eEeeCCCCC-CcChhhhhhHHHHHHHHHHHHhcCCEEEEcCCCCccH------HHHH-HHHHCCEEEEEEcCCccHHHHH
Confidence            111111100 0000001124578888899989999999999988632      1122 2233347888888875433221


Q ss_pred             ---HHH-------------H---HHHH----hCC-CcEEEEEEcccCCCch-hhhhhhHHHHHhh---cCCCceEecCCC
Q psy14904        164 ---LLS-------------L---EAIN----SRG-LKLIGWVANHTQIVDT-LFANENYIELTKY---LNVTPLGRIPYL  215 (233)
Q Consensus       164 ---~~~-------------~---~~l~----~~~-~~i~GiVlN~~~~~~~-~~~~~~~~~l~~~---~~~pvlg~IP~~  215 (233)
                         ...             +   +.++    +.+ .+ +++|+||++ ++. ...++..+.+++.   +|.++.+.||++
T Consensus       144 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~vV~N~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~~~Ip~~  221 (286)
T 2xj4_A          144 GTVDPVTLELTKPSLYSLTVWEGRKQRALSGQRQAMD-WVVLRNRLA-TTEARNRKRLEDRLNALAKRVGFRIGPGLRDR  221 (286)
T ss_dssp             EEECTTTCCEEEECHHHHHHHHHHHHHHHHCSSCCCE-EEEEEECCT-TCCGGGHHHHHHHHHHHHHHHCCEEEECCCCC
T ss_pred             HHHHHHhhhccccchhhhhhhcchhhhhhccCCcccc-EEEEEeeec-CCCcchhHHHHHHHHHHHHHcCCccCCCCCch
Confidence               111             2   2222    335 56 579999998 544 3444555666653   688777899998


Q ss_pred             CCCC
Q psy14904        216 YNLN  219 (233)
Q Consensus       216 ~~l~  219 (233)
                      ..+.
T Consensus       222 ~~~~  225 (286)
T 2xj4_A          222 VIYR  225 (286)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7554

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=99.86  E-value=5.1e-21  Score=160.45  Aligned_cols=195  Identities=15%  Similarity=0.151  Sum_probs=107.3

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCC---CCccchHHHHHHHHhCCCccc--ccce
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKN---KIWFNEDVNLLNKYSNSLYEF--TKLI   79 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~---~~l~~~d~~~~~~~~~~~~~~--~~~~   79 (233)
                      ..|+|+|+| ||||||||+|+|||.+|+++|+||+++|   .|++.....   .+...................  .+.+
T Consensus        47 ~aKVIAIaG-KGGVGKTTtavNLA~aLA~~GkkVllID---~Dpq~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~i  122 (314)
T 3fwy_A           47 GAKVFAVYG-KGGIGKSTTSSNLSAAFSILGKRVLQIG---CDPKHDSTFTLTGSLVPTVIDVLKDVDFHPEELRPEDFV  122 (314)
T ss_dssp             CCEEEEEEC-STTSSHHHHHHHHHHHHHHTTCCEEEEE---ESSSCCTTHHHHTSCCCCHHHHHHHTTSCGGGCCHHHHC
T ss_pred             CceEEEEEC-CCccCHHHHHHHHHHHHHHCCCeEEEEe---cCCCCcccccccCCCCCcchhhHhhhccccccccHhHhe
Confidence            578999996 9999999999999999999999999999   444321100   000001111111111111100  0001


Q ss_pred             eeee---ecCCCChhhhhhhcCCCCCHHHHHHHHH-----HhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEE
Q psy14904         80 NPYL---FKYPISPYTSSNLENRIINTSHIINCYN-----YLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIIL  151 (233)
Q Consensus        80 ~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vll  151 (233)
                      ....   ...+.+.    ...+.........+.+.     .+.+.||++++||++++...   .+.++ +..  ...+|+
T Consensus       123 ~~~~~~i~~v~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~d~~D~v~iD~~~~~~~~---~~~~a-l~a--Ad~viI  192 (314)
T 3fwy_A          123 FEGFNGVMCVEAGG----PPAGTGCGGYVVGQTVKLLKQHHLLDDTDVVIFDVLGDVVCG---GFAAP-LQH--ADQAVV  192 (314)
T ss_dssp             EECGGGCEEEECCC----CCTTCSCTTHHHHHHHHHHHHTTTTSSCSEEEEEECCSSCCG---GGGGG-GGT--CSEEEE
T ss_pred             eecCCCeEEEeCCC----CcccchhhhccHHHHHHHHHhcchhhcCceEeeccCCcchhh---hhHhH-Hhh--CCeEEE
Confidence            0000   0000000    00011111112222222     23468999999999876321   11111 111  236899


Q ss_pred             EEcCCCCcHHHHHHHHHHHH----hCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCC
Q psy14904        152 VIDLKIGCINNALLSLEAIN----SRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLN  219 (233)
Q Consensus       152 V~~~~~~~~~~~~~~~~~l~----~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~  219 (233)
                      |++++..++..+...++.++    +.+.++.|+|+|+.+ ..     ...+.+.+.++.++++.||++..++
T Consensus       193 vt~~e~~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~-~~-----~~v~~~a~~~~~~~lg~IP~d~~Vr  258 (314)
T 3fwy_A          193 VTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSR-AT-----DEVDRFCKETNFRRLAHMPDLDAIR  258 (314)
T ss_dssp             EECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCS-CC-----HHHHHHHHHHTCCEEEEECCCHHHH
T ss_pred             EeCCcHHHHHHHHHHHHHHHHHhccCCCceEEEEEcCCC-ch-----hHHHHHHHHhCCeEEEEecCchHHH
Confidence            99998766655444444333    457889999999876 32     2234555567999999999998655

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*

Probab=99.85  E-value=1.4e-20  Score=160.26  Aligned_cols=72  Identities=11%  Similarity=0.097  Sum_probs=59.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCch----------hhhhhhHHHHHhhcCCCceEecCCCC
Q psy14904        147 LPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDT----------LFANENYIELTKYLNVTPLGRIPYLY  216 (233)
Q Consensus       147 ~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~----------~~~~~~~~~l~~~~~~pvlg~IP~~~  216 (233)
                      ..+++|+.++..++.++...++.+++.++++.|+|+|++. +..          ...+..++.+.+.++.+.++.||+++
T Consensus       238 ~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~-~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~l~~iPl~~  316 (349)
T 3ug7_A          238 TAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLI-PEDVQCDFCRARRELQLKRLEMIKEKFGDKVIAYVPLLR  316 (349)
T ss_dssp             EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC-CSCCCSHHHHHHHHHHHHHHHHHHHHSTTSEEEEEECCS
T ss_pred             ceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCc-cccCCCchHHHHHHHHHHHHHHHHHHcCCCcEEEecCCC
Confidence            3589999999989999999999999999999999999997 431          12345667788888999999999987


Q ss_pred             CCC
Q psy14904        217 NLN  219 (233)
Q Consensus       217 ~l~  219 (233)
                      .-.
T Consensus       317 ~e~  319 (349)
T 3ug7_A          317 TEA  319 (349)
T ss_dssp             SCS
T ss_pred             CCC
Confidence            544

>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=99.85  E-value=3.5e-20  Score=156.26  Aligned_cols=71  Identities=11%  Similarity=0.156  Sum_probs=57.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCch----------hhhhhhHHHHHhhcCCCceEecCCCC
Q psy14904        147 LPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDT----------LFANENYIELTKYLNVTPLGRIPYLY  216 (233)
Q Consensus       147 ~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~----------~~~~~~~~~l~~~~~~pvlg~IP~~~  216 (233)
                      ..+++|+.++..++.++...++.+++.++++.|+|+|++. +..          ..+...++.+++.++.+.++.||+.+
T Consensus       223 ~~~vlV~~p~~~~~~~~~~~~~~l~~~gi~v~gvV~N~~~-~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~iPl~~  301 (324)
T 3zq6_A          223 TSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVL-PEESDCEFCNARRKLQQERLKQIREKFSDKVVAEVPLLK  301 (324)
T ss_dssp             EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC-CSCCCSHHHHHHHHHHHHHHHHHHHHTTTSEEEEEECCS
T ss_pred             CeEEEEeCCcccHHHHHHHHHHHHHHCCCCccEEEEcCCc-cccCCChHHHHHHHHHHHHHHHHHHHcCCCcEEEecCCC
Confidence            3689999999889999999999999999999999999997 431          22345567778888888888999976


Q ss_pred             CC
Q psy14904        217 NL  218 (233)
Q Consensus       217 ~l  218 (233)
                      .-
T Consensus       302 ~e  303 (324)
T 3zq6_A          302 KE  303 (324)
T ss_dssp             SC
T ss_pred             CC
Confidence            43

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}

Probab=99.82  E-value=2.7e-20  Score=159.90  Aligned_cols=210  Identities=14%  Similarity=0.096  Sum_probs=119.3

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccc--hHHHHHHHHhCCCc----cc--
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFN--EDVNLLNKYSNSLY----EF--   75 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~--~d~~~~~~~~~~~~----~~--   75 (233)
                      +++++|+|+|.|||+||||+|+|||.+|+++|+||+++|....+....  .-+..+  .-..++........    ..  
T Consensus       141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D~~~~l~~--~lg~~~~~~l~d~l~~~~~~~~~~~~~l~~  218 (373)
T 3fkq_A          141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIEQCGTTDV--FFQAEGNATMSDVIYSLKSRKANLLLKLES  218 (373)
T ss_dssp             TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECCTTCCHHH--HCCCSCSCCHHHHHHHHHSCCSCHHHHHHH
T ss_pred             CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHH--HcCCCCCCCHHHHHhhhhcccccccccHHH
Confidence            468999999999999999999999999999999999999331110000  000000  01111111100000    00  


Q ss_pred             -----ccceeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhh--cCCCeEEEeccCcccCccCCCCchHHHHHHhCCC
Q psy14904         76 -----TKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLS--NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLP  148 (233)
Q Consensus        76 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~--~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~  148 (233)
                           ...+.  .+  |.++....   ......+.+.+.++.++  ..||+||||||++...      ....++.. ...
T Consensus       219 ~i~~~~~~l~--~l--~~~~~~~~---~~~~~~~~~~~ll~~l~~~~~yD~VIID~p~~~~~------~~~~~l~~-aD~  284 (373)
T 3fkq_A          219 CIKQSQEGVS--YF--SSTKVALD---ILEISYADIDTLIGNIQGMDNYDEIIVDLPFSLEI------EKLKLLSK-AWR  284 (373)
T ss_dssp             TCEECTTSCE--EC--CCCSSGGG---GGGCCHHHHHHHHHHHHHTSCCSEEEEECCCCCCH------HHHHHHTT-CSE
T ss_pred             HhhcCCCCEE--Ee--cCCCChHh---HHhCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCH------HHHHHHHH-CCE
Confidence                 01111  11  11111111   01124556667777766  7999999999977642      12222222 346


Q ss_pred             EEEEEcCCCCc---HHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCChhhhhh
Q psy14904        149 IILVIDLKIGC---INNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLNINLISH  225 (233)
Q Consensus       149 vllV~~~~~~~---~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~~~~~~~  225 (233)
                      +++|+.++..+   +.++...++.++.. .+ .++|.|+.. ..........+.+ +..++|++|.||+++......+.+
T Consensus       285 vivv~~~~~~s~~~l~~~~~~l~~l~~~-~~-~~vv~N~~~-v~~~~~~~~~~fl-~~~~l~~lG~IP~D~~~~~~~ii~  360 (373)
T 3fkq_A          285 IIVVNDGSQLSNYKFMRAYESVVLLEQN-DD-INIIRNMNM-IYNKFSNKNSEML-SNISIKTIGGAPRYEHATVRQIIE  360 (373)
T ss_dssp             EEEEECCCHHHHHHHHHHHHHHHHHTTS-TT-CCCGGGEEE-EECSCCTTTCCCC-CSCSCEEEEECCCCTTCCHHHHHH
T ss_pred             EEEEecCCchHHHHHHHHHHHHHHhccc-CC-cEEEehhHH-HHHHHHHHHHHHh-hcCCccceeecCCCCCcCHHHHHH
Confidence            88899888755   55566666666542 23 566655543 1111111111111 124899999999999999888777


Q ss_pred             hcCCCCCC
Q psy14904        226 YLDFSSLF  233 (233)
Q Consensus       226 ~~~~~~~~  233 (233)
                      .+..+.+|
T Consensus       361 ~l~~~~~f  368 (373)
T 3fkq_A          361 ALTKMEFF  368 (373)
T ss_dssp             HHHTCTTH
T ss_pred             HHHHHHHH
Confidence            77666553

>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A

Probab=99.81  E-value=9.9e-20  Score=157.60  Aligned_cols=202  Identities=10%  Similarity=0.034  Sum_probs=111.3

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHHH------cCCeeeEEeeeecCcccCC-CCCCcc------c-hHHHHHHHHh
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFKK------RGISCIGMKPIASGAYLNN-KNKIWF------N-EDVNLLNKYS   69 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~------~G~~Vl~~dp~~~~~~~~~-~~~~l~------~-~d~~~~~~~~   69 (233)
                      .++++|+|+|.|||+||||+|+|||.+|++      +|+||+++|   .+++..- ..-+..      . .-...+....
T Consensus       106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD---~D~q~~l~~~l~~~~~~~~~~~~~~~~l~~~~  182 (398)
T 3ez2_A          106 SEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVID---LDPQSSATMFLSHKHSIGIVNATSAQAMLQNV  182 (398)
T ss_dssp             CSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEE---ECTTCHHHHHHSCHHHHSSCCSCHHHHHHHCC
T ss_pred             CCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEe---CCCCCChhHHhCCccccccccccHHHHHHhhc
Confidence            368999999999999999999999999994      799999999   3333100 000000      0 0000011000


Q ss_pred             -------C-CCcccccceeeeeecCCCChhhh-----------hhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccC
Q psy14904         70 -------N-SLYEFTKLINPYLFKYPISPYTS-----------SNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSV  130 (233)
Q Consensus        70 -------~-~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~  130 (233)
                             . +.....+++.  .+  |....+.           ....+.......+.+.++.++++||||||||||++..
T Consensus       183 ~~~~~~~~~i~~~~~~~l~--vl--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~yD~ViiD~pp~~~~  258 (398)
T 3ez2_A          183 SREELLEEFIVPSVVPGVD--VM--PASIDDAFIASDWRELCNEHLPGQNIHAVLKENVIDKLKSDYDFILVDSGPHLDA  258 (398)
T ss_dssp             CHHHHHHHTCEECSSTTEE--EE--CCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTHHHHTTTCSEEEEEECSCCSH
T ss_pred             cccccHHHHhhcccCCCce--Ee--cCCchhhhHHHHHHHHHHhhccccChHHHHHHHHHHHhhccCCEEEEeCCCCccH
Confidence                   0 0000001111  11  1121110           0111111122344567788889999999999988743


Q ss_pred             ccCCCCchHHHHHHhCCCEEEEEcCCCCcHH-------HHHHHHHHHHh--CCCcEEEEEEcccCCCchhhhhhhHHHHH
Q psy14904        131 PFHDNENSADLAEKLGLPIILVIDLKIGCIN-------NALLSLEAINS--RGLKLIGWVANHTQIVDTLFANENYIELT  201 (233)
Q Consensus       131 p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~-------~~~~~~~~l~~--~~~~i~GiVlN~~~~~~~~~~~~~~~~l~  201 (233)
                      .     ..+.+. . ...+++|+.++..++.       .+...++.+++  .+.++.|+|.|+.+.......+...+.++
T Consensus       259 ~-----~~~~l~-~-aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~giv~~~~~~~~~~~~~~~~~~l~  331 (398)
T 3ez2_A          259 F-----LKNALA-S-ANILFTPLPPATVDFHSSLKYVARLPELVKLISDEGCECQLATNIGFMSKLSNKADHKYCHSLAK  331 (398)
T ss_dssp             H-----HHHHHH-H-CSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCCEEEEEEEECSCHHHHHHHHHHH
T ss_pred             H-----HHHHHH-H-CCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEEEecCCCchhHHHHHHHHH
Confidence            1     122222 2 2368888888654332       23334444443  35666677554443111223345677888


Q ss_pred             hhcCCCce-EecCCCCCCC
Q psy14904        202 KYLNVTPL-GRIPYLYNLN  219 (233)
Q Consensus       202 ~~~~~pvl-g~IP~~~~l~  219 (233)
                      +.+|.+++ +.||+++.+.
T Consensus       332 ~~~g~~vl~~~IP~~~~i~  350 (398)
T 3ez2_A          332 EVFGGDMLDVFLPRLDGFE  350 (398)
T ss_dssp             HHHGGGBCSCCEECCHHHH
T ss_pred             HHhcccccceeccchHHHH
Confidence            88899999 7899987654

>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}

Probab=99.81  E-value=2.3e-20  Score=159.59  Aligned_cols=37  Identities=16%  Similarity=0.212  Sum_probs=36.3

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ||+|+|+|.||||||||+|+|||.+|+++|+||+++|
T Consensus         1 MkvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID   37 (361)
T 3pg5_A            1 MRTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVD   37 (361)
T ss_dssp             CEEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CeEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEE
Confidence            7899999999999999999999999999999999999

>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A

Probab=99.80  E-value=2e-19  Score=155.99  Aligned_cols=202  Identities=9%  Similarity=0.002  Sum_probs=95.2

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHH------HcCCeeeEEeeeecCcccC-CCCCCccch-------HHHHHHHHh
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFK------KRGISCIGMKPIASGAYLN-NKNKIWFNE-------DVNLLNKYS   69 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~------~~G~~Vl~~dp~~~~~~~~-~~~~~l~~~-------d~~~~~~~~   69 (233)
                      .++++|+|+|.||||||||+|+|||.+|+      ++|+||+++|   .+++.. ...-+....       -...+....
T Consensus       109 ~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD---~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~  185 (403)
T 3ez9_A          109 KSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVID---LDPQASSTMFLDHTHSIGSILETAAQAMLNNL  185 (403)
T ss_dssp             CSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEE---ESSSSGGGSCC----------CCHHHHHHHTC
T ss_pred             CCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEe---CCCCCChhhhhCCCcccCcccccHHHHHHhcc
Confidence            46899999999999999999999999999      6899999998   333221 000011000       001111100


Q ss_pred             C----CCccc----ccceeeeeecCCCChhhh-----------hhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccC
Q psy14904         70 N----SLYEF----TKLINPYLFKYPISPYTS-----------SNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSV  130 (233)
Q Consensus        70 ~----~~~~~----~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~  130 (233)
                      .    +...+    .+++.  .+  |.+..+.           ....+.......+.+.++.++++||||||||||++..
T Consensus       186 ~~~~~~~~~i~~~~~~~l~--~l--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~yD~VIID~pP~~~~  261 (403)
T 3ez9_A          186 DAETLRKEVIRPTIVPGVD--VI--PASIDDGFVASQWRELVEEHLPGQNQYEILRRNIIDRVADDYDFIFIDTGPHLDP  261 (403)
T ss_dssp             CHHHHHHTTSEECSSTTEE--EE--CCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTGGGSGGGCSEEEEEECSSCSH
T ss_pred             cccccHHHHHhhcccCCce--EE--ecCcchhhHHHHHHHHHHHhccccchHHHHHHHHHHHHhhcCCEEEEECCCCccH
Confidence            0    00000    01111  11  1221110           0011111112233456677888999999999988742


Q ss_pred             ccCCCCchHHHHHHhCCCEEEEEcCCCCcHH-------HHHHHHHHHHhC--CCcEEEE--EEcccCCCchhhhhhhHHH
Q psy14904        131 PFHDNENSADLAEKLGLPIILVIDLKIGCIN-------NALLSLEAINSR--GLKLIGW--VANHTQIVDTLFANENYIE  199 (233)
Q Consensus       131 p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~-------~~~~~~~~l~~~--~~~i~Gi--VlN~~~~~~~~~~~~~~~~  199 (233)
                      .     ....+. . .+.+++|+.++..++.       .+...++.+++.  +.++.|+  ++|+++ . ....+...+.
T Consensus       262 ~-----~~~al~-~-aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~-~-~~~~~~~~~~  332 (403)
T 3ez9_A          262 F-----LLNGLA-A-SDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMT-G-KRDHETSHSL  332 (403)
T ss_dssp             H-----HHHHHH-H-CSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC-----CHHHHHHHHH
T ss_pred             H-----HHHHHH-H-CCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccC-C-chhHHHHHHH
Confidence            1     122222 2 2368888888654332       233344444433  5566665  456665 2 2233456678


Q ss_pred             HHhhcCCCce-EecCCCCCCChh
Q psy14904        200 LTKYLNVTPL-GRIPYLYNLNIN  221 (233)
Q Consensus       200 l~~~~~~pvl-g~IP~~~~l~~~  221 (233)
                      +++.+|.+++ +.||+++.+...
T Consensus       333 ~~~~~g~~vl~~~IP~~~~v~~a  355 (403)
T 3ez9_A          333 AREVYASNILDSSLPRLDGFERC  355 (403)
T ss_dssp             HHHHHTTSEECCC----------
T ss_pred             HHHHhhHhhhceeCCchHHHHHH
Confidence            8888899999 889999877643

>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}

Probab=99.78  E-value=5.8e-18  Score=142.99  Aligned_cols=68  Identities=7%  Similarity=0.077  Sum_probs=51.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCch----------hhhhhhHHHHHhhcC-CCceEecCCCC
Q psy14904        148 PIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDT----------LFANENYIELTKYLN-VTPLGRIPYLY  216 (233)
Q Consensus       148 ~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~----------~~~~~~~~~l~~~~~-~pvlg~IP~~~  216 (233)
                      .+++|+.++..++.++...++.++..++++.|+|+|++..|..          ..++..++.+++.++ .|+ +.||+.+
T Consensus       223 ~~vlV~~pe~~~i~ea~~~~~~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~~-~~vP~~~  301 (329)
T 2woo_A          223 TFVCVCISEFLSLYETERMIQELTSYEIDTHNIVVNQLLLDPNTTCPQCMARRKMQQKYLAQIEELYEDFHV-VKVPQVP  301 (329)
T ss_dssp             EEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECCCSSCCCHHHHHHHHHHHHHHHHHHHHTTTSEE-EEEECCS
T ss_pred             EEEEEeCCCcchHHHHHHHHHHHHHCCCCCCEEEEeCCcCcccccCHHHHHHHHHHHHHHHHHHHhcCCCCE-EEecCCC
Confidence            4899999998899999999999999999999999999871111          123345666777774 566 6888754

>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*

Probab=99.77  E-value=1.1e-17  Score=142.59  Aligned_cols=39  Identities=8%  Similarity=0.037  Sum_probs=36.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904        148 PIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ  186 (233)
Q Consensus       148 ~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~  186 (233)
                      .+++|+.++..++.++...++.++..++++.|+|+|++.
T Consensus       237 ~~vlV~~pe~~si~ea~r~~~~L~~~g~~~~gvVvN~v~  275 (354)
T 2woj_A          237 TFVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLL  275 (354)
T ss_dssp             EEEEEEESSHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred             EEEEEeCCCcchHHHHHHHHHHHHHcCCCCCEEEEecCC
Confidence            489999999989999999999999999999999999997

>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}

Probab=99.75  E-value=2.5e-17  Score=138.54  Aligned_cols=170  Identities=15%  Similarity=0.125  Sum_probs=126.8

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeee
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLF   84 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~   84 (233)
                      ..+.++++||...+||||++..|..++.++|+++.++.+-+++                ++..-.+...   +..   ..
T Consensus       151 ~~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~tgqtg----------------~~~~~~gi~~---Dav---~~  208 (349)
T 2obn_A          151 PCRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLATGQTG----------------VMLEGDGVAL---DAV---RV  208 (349)
T ss_dssp             SSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEECCSHHH----------------HHHHSCSCCG---GGS---BH
T ss_pred             cceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEeccchh----------------hhhhcCCcch---hHH---HH
Confidence            4689999999999999999999999999999999998732221                1111112111   111   00


Q ss_pred             cCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCC-EEEEEcCCCCcH---
Q psy14904         85 KYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLP-IILVIDLKIGCI---  160 (233)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~-vllV~~~~~~~~---  160 (233)
                            ...+         ..+.....++.++||+++|||.+|+.+|. ...+ .+++...+.+ +|+|..++++.+   
T Consensus       209 ------df~a---------G~ve~~~~~~~~~~d~vlVEGqGgl~~P~-~~~t-~~ll~g~~p~~vILv~~~~~g~i~~~  271 (349)
T 2obn_A          209 ------DFAA---------GAVEQMVMRYGKNYDILHIEGQGSLLHPG-STAT-LPLIRGSQPTQLVLVHRAGQTHNGNN  271 (349)
T ss_dssp             ------HHHH---------HHHHHHHHHHTTTCSEEEECCCCCTTSTT-CCTH-HHHHHHHCCSEEEEEEETTCCBCSSC
T ss_pred             ------HHHh---------hhHHHHHHHhccCCCEEEEeCCCcccCcC-hHhH-HHHHHHcCCCeEEEEECCCCceECCC
Confidence                  0011         12333444567789999999999999998 5554 7999988856 999999888776   


Q ss_pred             --------HHHHHHHHHHHh-----CCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCC
Q psy14904        161 --------NNALLSLEAINS-----RGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPY  214 (233)
Q Consensus       161 --------~~~~~~~~~l~~-----~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~  214 (233)
                              ++...+++.+.+     .+++++|+++|.++ ......+++.+.+++.+|+|+++.+..
T Consensus       272 ~~~~~p~l~~~i~t~e~l~~~~~~~~~~~V~Gi~lN~~~-~~~~~~~~~~~~ie~~~glPv~d~~r~  337 (349)
T 2obn_A          272 PHVPIPPLPEVIRLYETVASGGGAFGTVPVVGIALNTAH-LDEYAAKEAIAHTIAETGLPCTDVVRF  337 (349)
T ss_dssp             TTSBCCCHHHHHHHHHHHHHTTTTSCCCCEEEEEEECTT-SCHHHHHHHHHHHHHHHCSCEECHHHH
T ss_pred             CccCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEEECCC-CCHHHHHHHHHHHHHHHCCCEEEEecC
Confidence                    887777777754     88999999999998 655567788999999999999987654

>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*

Probab=99.73  E-value=3.3e-17  Score=138.38  Aligned_cols=68  Identities=9%  Similarity=0.137  Sum_probs=51.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCch-----------hhhhhhHHHHHhhcC--CCceEecCC
Q psy14904        148 PIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDT-----------LFANENYIELTKYLN--VTPLGRIPY  214 (233)
Q Consensus       148 ~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~-----------~~~~~~~~~l~~~~~--~pvlg~IP~  214 (233)
                      .+++|+.++..++.++...++.+++.|+++.|+|+|++..|..           ...+..++.+.+.++  .|++ .||+
T Consensus       224 ~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~r~~~q~~~l~~i~~~~~~~~~~~-~~pl  302 (334)
T 3iqw_A          224 TFVCVCIPEFLSLYETERMIQELANYGIDTHCIVVNQLLFPKPGSDCEQCTARRRMQKKYLDQIEELYDEEFNVV-KMPL  302 (334)
T ss_dssp             EEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCCCTTCCCHHHHHHHHHHHHHHHHHHHHHTTTSEEE-EEEC
T ss_pred             eEEEEECCCccHHHHHHHHHHHHHHCCCCccEEEECCCcCcccCCcCHHHHHHHHHHHHHHHHHHHhccCCCCEE-EecC
Confidence            4899999998899999999999999999999999999862210           112344566666554  5765 7888


Q ss_pred             CC
Q psy14904        215 LY  216 (233)
Q Consensus       215 ~~  216 (233)
                      .+
T Consensus       303 ~~  304 (334)
T 3iqw_A          303 LV  304 (334)
T ss_dssp             CS
T ss_pred             CC
Confidence            64

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*

Probab=99.71  E-value=4.5e-17  Score=147.57  Aligned_cols=167  Identities=17%  Similarity=0.107  Sum_probs=98.7

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCccc-----c--cc
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEF-----T--KL   78 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~-----~--~~   78 (233)
                      ++.|.+++.|||+||||+|++||.+++++|+||+++|   .++..     .        +...++.....     .  .+
T Consensus         7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd---~D~~~-----~--------l~~~l~~~~~~~~~~v~~~~~   70 (589)
T 1ihu_A            7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVS---TDPAS-----N--------VGQVFSQTIGNTIQAIASVPG   70 (589)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE---CCTTC-----C--------HHHHTTSCCCSSCEECTTSTT
T ss_pred             CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEE---CCCCc-----C--------HHHHhCCcccCCCceeccchh
Confidence            3456677888999999999999999999999999998   33321     0        01111111000     0  00


Q ss_pred             eeeee-----------------ecCCCChhhh----hhhcC----CCCCHHHHHHHHH--HhhcCCCeEEEeccCccc--
Q psy14904         79 INPYL-----------------FKYPISPYTS----SNLEN----RIINTSHIINCYN--YLSNLTDVIILEGIGGFS--  129 (233)
Q Consensus        79 ~~~~~-----------------~~~~~~~~~~----~~~~~----~~~~~~~l~~~~~--~l~~~~D~vlID~~~g~~--  129 (233)
                      +....                 ...-......    ....+    +....+.+.+.++  +++.+||+|||||||...  
T Consensus        71 l~~~~~d~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~l~~~~~~e~~~~~~~~~ll~~~~l~~~yD~VIiDt~P~~~~l  150 (589)
T 1ihu_A           71 LSALEIDPQAAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTDASLLTRFDHIIFDTAPTGHTI  150 (589)
T ss_dssp             EEEEECCHHHHHHHHHHHHHGGGTTTSCHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHCTTHHHHCSEEEESSCCCHHHH
T ss_pred             hhhccCCHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhcccchHHHHHHHHHHHHHhchhhcccCCEEEECCCCchhHH
Confidence            00000                 0000000000    00000    0012355677777  667889999999997521  


Q ss_pred             ----CccCC-C-C---------------------chHHHHHHhCC----CEEEEEcCCCCcHHHHHHHHHHHHhCCCcEE
Q psy14904        130 ----VPFHD-N-E---------------------NSADLAEKLGL----PIILVIDLKIGCINNALLSLEAINSRGLKLI  178 (233)
Q Consensus       130 ----~p~~~-~-~---------------------~~~~l~~~~~~----~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~  178 (233)
                          .|... . +                     ...++...+..    .+++|+.++..++.++...++.+++.++++.
T Consensus       151 rll~lP~~~~~~l~~~~~~~~~l~~~~~l~~~~~~~~~~~~~l~d~~~t~vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~  230 (589)
T 1ihu_A          151 RLLQLPGAWSSFIDSNPEGASCLGPMAGLEKQREQYAYAVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAAIGLKNQ  230 (589)
T ss_dssp             HHHHCGGGGTCCC------CCCCGGGGGCCSCHHHHHHHHHHHHCTTTEEEEEEEESCHHHHHHHHHHHHHHHHHTCCCE
T ss_pred             HHHHhHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHhcCCCCcEEEEEeCCCccHHHHHHHHHHHHHhCCCCCC
Confidence                11000 0 0                     01122222323    3899999999899999999999999999999


Q ss_pred             EEEEcccCCCc
Q psy14904        179 GWVANHTQIVD  189 (233)
Q Consensus       179 GiVlN~~~~~~  189 (233)
                      |+|+|++. +.
T Consensus       231 gvVlN~v~-~~  240 (589)
T 1ihu_A          231 YLVINGVL-PK  240 (589)
T ss_dssp             EEEEEEEC-CG
T ss_pred             EEEEcCCc-Cc
Confidence            99999998 54

>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}

Probab=99.71  E-value=1.5e-16  Score=135.04  Aligned_cols=67  Identities=10%  Similarity=0.097  Sum_probs=51.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCch-------------hhhhhhHHHHHhhcC-CCceEecC
Q psy14904        148 PIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDT-------------LFANENYIELTKYLN-VTPLGRIP  213 (233)
Q Consensus       148 ~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~-------------~~~~~~~~~l~~~~~-~pvlg~IP  213 (233)
                      .+++|+.++..++.++...++.+++.++++.|+|+|++. +..             ...+..++.+.+.++ .|++ .||
T Consensus       233 ~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~-~~~~~~~~~~~~~~r~~~q~~~l~~i~~~~~~~~~~-~~p  310 (348)
T 3io3_A          233 TFICVCISEFLSLYETERMIQELMSYNMDVNSIVVNQLL-FAEGDDHSCKRCESRWKMQKKYLDQMGELYEDYHLV-KMP  310 (348)
T ss_dssp             EEEEEEESSHHHHHHHHHHHHHHHHTTCCCCEEEEEEEC-CCC-----CHHHHHHHHHHHHHHHHHHHHTTTSEEE-EEE
T ss_pred             EEEEEecCCccHHHHHHHHHHHHHHCCCCccEEEEcCCc-cccccCccCHHHHHHHHHHHHHHHHHHHHccCCCEE-Eec
Confidence            489999999889999999999999999999999999997 421             112334566666664 5554 788


Q ss_pred             CCC
Q psy14904        214 YLY  216 (233)
Q Consensus       214 ~~~  216 (233)
                      +.+
T Consensus       311 l~~  313 (348)
T 3io3_A          311 LLG  313 (348)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            866

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*

Probab=99.70  E-value=2.2e-17  Score=149.62  Aligned_cols=203  Identities=9%  Similarity=0.049  Sum_probs=114.6

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccC--CC----CCCcc--chHHH-HHHHHhCCCccc
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLN--NK----NKIWF--NEDVN-LLNKYSNSLYEF   75 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~--~~----~~~l~--~~d~~-~~~~~~~~~~~~   75 (233)
                      +.+++.+++.|||+||||+|+|||..++++|++|+++|   .++...  ..    .+++.  .-+.. ......      
T Consensus       325 ~~~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD---~Dp~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~------  395 (589)
T 1ihu_A          325 NEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTT---SDPAAHLSMTLNGSLNNLQVSRIDPHEETERYR------  395 (589)
T ss_dssp             TSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE---SCCC-----------CCEEEEECCHHHHHHHHH------
T ss_pred             cCCeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEe---CCCcccHhHHhcccCCCceeeecchHHHHHHHH------
Confidence            45689999999999999999999999999999999987   332210  00    00110  00000 000000      


Q ss_pred             ccceeee---eecCCCChhhhhhhcCCCCCHHHHHHHHHHh--hcCCCeEEEeccCcccCc----------------cCC
Q psy14904         76 TKLINPY---LFKYPISPYTSSNLENRIINTSHIINCYNYL--SNLTDVIILEGIGGFSVP----------------FHD  134 (233)
Q Consensus        76 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l--~~~~D~vlID~~~g~~~p----------------~~~  134 (233)
                       +.+.+.   .+..+..+.......+.......+.+.+.++  ..+||+|||||||+....                ...
T Consensus       396 -~~v~~~~~~~l~~~~~~~~~~~~~~p~~~e~~~~~~l~~~~~~~~~D~vviD~~p~~~tl~ll~~p~~~~~~~~~~~~~  474 (589)
T 1ihu_A          396 -QHVLETKGKELDEAGKRLLEEDLRSPCTEEIAVFQAFSRVIREAGKRFVVMDTAPTGHTLLLLDATGAYHREIAKKMGE  474 (589)
T ss_dssp             -HHHHHHHHTTCCHHHHHHHHHHTTSHHHHHHHHHHHHTTTGGGGGTSEEEESCCCCHHHHHHHHHC-------------
T ss_pred             -HHHHHhhhccCChhhHHHHHHHhcCCChHHHHHHHHHHHHHhccCCCEEEEcCCCCccHHHHHHhHHHHHHHHHHhccc
Confidence             000000   0000000001010100000001122333332  246999999999884211                000


Q ss_pred             CCchHHHHHH----hCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCc-----------hhhhhhhHHH
Q psy14904        135 NENSADLAEK----LGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVD-----------TLFANENYIE  199 (233)
Q Consensus       135 ~~~~~~l~~~----~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~-----------~~~~~~~~~~  199 (233)
                      .....++...    ....+++|+.++..++.++...++.+++.++++.|+|+|++. +.           .......++.
T Consensus       475 ~~~~~~~~~~l~d~~~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~~~~gvVvN~~~-~~~~~~~~~~~~~~~~~~~~l~~  553 (589)
T 1ihu_A          475 KGHFTTPMMLLQDPERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSL-SIADTRSPLLRMRAQQELPQIES  553 (589)
T ss_dssp             -----CCHHHHHCTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEES-TTSCCCCHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHhcCCCCCEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCc-CCCCCcCHHHHHHHHHHHHHHHH
Confidence            0011222221    124799999999989999999999999999999999999998 43           1223455677


Q ss_pred             HHhhcCCCceEecCCCCCCC
Q psy14904        200 LTKYLNVTPLGRIPYLYNLN  219 (233)
Q Consensus       200 l~~~~~~pvlg~IP~~~~l~  219 (233)
                      +++.++.|+ +.||+.+.-.
T Consensus       554 l~~~~~~~v-~~iP~~~~e~  572 (589)
T 1ihu_A          554 VKRQHASRV-ALVPVLASEP  572 (589)
T ss_dssp             HHTTTCSSE-EEEECCSSCC
T ss_pred             HHHhcCCcE-EEccCCCCCC
Confidence            888888888 7999876544

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=99.63  E-value=6.7e-15  Score=128.25  Aligned_cols=174  Identities=15%  Similarity=0.146  Sum_probs=100.3

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHc-CCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeee
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKR-GISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYL   83 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~-G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~   83 (233)
                      +.++|+++| ++|+||||++.+||.+|+++ |++|+++|   .+++..    +    ..+.+..+.. .    .++..  
T Consensus        99 ~~~vI~ivG-~~GvGKTT~a~~LA~~l~~~~G~kVllvd---~D~~r~----~----a~~ql~~~~~-~----~~l~v--  159 (433)
T 2xxa_A           99 PPAVVLMAG-LQGAGKTTSVGKLGKFLREKHKKKVLVVS---ADVYRP----A----AIKQLETLAE-Q----VGVDF--  159 (433)
T ss_dssp             SSEEEEEEC-STTSSHHHHHHHHHHHHHHTSCCCEEEEE---CCCSST----T----HHHHHHHHHH-H----HTCEE--
T ss_pred             CCeEEEEEC-CCCCCHHHHHHHHHHHHHHhcCCeEEEEe---cCCCCc----c----HHHHHHhhcc-c----CCeeE--
Confidence            467899997 59999999999999999999 99999999   444421    1    1222221110 0    11111  


Q ss_pred             ecCCCChhhhhhhcCCCCCHH-HHHHHHHHhh-cCCCeEEEeccCcccCccCCCCchHHHHH----HhCCCEEEEEcCCC
Q psy14904         84 FKYPISPYTSSNLENRIINTS-HIINCYNYLS-NLTDVIILEGIGGFSVPFHDNENSADLAE----KLGLPIILVIDLKI  157 (233)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~l~-~~~D~vlID~~~g~~~p~~~~~~~~~l~~----~~~~~vllV~~~~~  157 (233)
                      +..+.           ..+.. .+.+.++.++ ++||+|||||||.+..   ......++..    ....++++|+++..
T Consensus       160 ~~~~~-----------~~dp~~i~~~~l~~~~~~~~D~VIIDTpG~l~~---~~~l~~~L~~~~~~~~p~~vllVvda~~  225 (433)
T 2xxa_A          160 FPSDV-----------GQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHV---DEAMMDEIKQVHASINPVETLFVVDAMT  225 (433)
T ss_dssp             CCCCS-----------SSCHHHHHHHHHHHHHHTTCSEEEEECCCCCTT---CHHHHHHHHHHHHHSCCSEEEEEEETTB
T ss_pred             EeCCC-----------CCCHHHHHHHHHHHHHhCCCCEEEEECCCcccc---cHHHHHHHHHHHHhhcCcceeEEeecch
Confidence            11100           01222 2366777776 6899999999876531   0111222221    12347888888764


Q ss_pred             CcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCC--ceEecCCCCC
Q psy14904        158 GCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVT--PLGRIPYLYN  217 (233)
Q Consensus       158 ~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~p--vlg~IP~~~~  217 (233)
                      +  .++....+.+. .++++.|+|+||++ .....  .....+.+.++.|  ++|..+...+
T Consensus       226 g--~~~~~~~~~f~-~~l~i~gvVlnK~D-~~~~~--g~~l~i~~~~~~Pi~~iG~ge~v~d  281 (433)
T 2xxa_A          226 G--QDAANTAKAFN-EALPLTGVVLTKVD-GDARG--GAALSIRHITGKPIKFLGVGEKTEA  281 (433)
T ss_dssp             C--TTHHHHHHHHH-HHSCCCCEEEECTT-SSSCC--THHHHHHHHHCCCEEEEECSSSSSC
T ss_pred             h--HHHHHHHHHHh-ccCCCeEEEEecCC-CCccH--HHHHHHHHHHCCCeEEEecCCCchh
Confidence            3  22333344433 35778899999998 53222  2333445556766  4465554443

>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}

Probab=99.62  E-value=1.1e-15  Score=130.71  Aligned_cols=71  Identities=11%  Similarity=0.046  Sum_probs=53.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhc-CCCceEecCCCCCCChhhhhh
Q psy14904        147 LPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYL-NVTPLGRIPYLYNLNINLISH  225 (233)
Q Consensus       147 ~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~-~~pvlg~IP~~~~l~~~~~~~  225 (233)
                      ..+++|+.++..++.++...++.++..|+++.|+|+|+ . .       .++.+++.+ +.|+. .||..+.-....+++
T Consensus       215 t~~vlVt~pe~~sl~ea~r~~~~L~~~gi~v~gvVvN~-~-~-------~l~~i~~~F~~~~v~-~vpl~~~e~l~~l~~  284 (374)
T 3igf_A          215 VAAFLVTTADPLEVVSVRYLWGSAQQIGLTIGGVIQVS-S-Q-------TEGDLSAEFTPLSVT-VVPDVTKGDWQPLID  284 (374)
T ss_dssp             EEEEEEECSCHHHHHHHHHHHHHHHHHTCCEEEEEECC-C-S-------CCCCCGGGSTTSCEE-ECCCCBTTBCHHHHH
T ss_pred             eEEEEEECCCccHHHHHHHHHHHHHHcCCCccEEEEcC-H-H-------HHHHHHHhcCCCceE-ECCCCChhHHHHHHH
Confidence            35899999999899999999999999999999999999 4 2       233345555 56765 788755445555655


Q ss_pred             hc
Q psy14904        226 YL  227 (233)
Q Consensus       226 ~~  227 (233)
                      .|
T Consensus       285 ~l  286 (374)
T 3igf_A          285 AL  286 (374)
T ss_dssp             HC
T ss_pred             Hh
Confidence            55

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=99.50  E-value=1.7e-12  Score=108.98  Aligned_cols=171  Identities=13%  Similarity=0.204  Sum_probs=94.6

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeee
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLF   84 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~   84 (233)
                      +.++|+|+|. +|+||||++.+||..++..|++|++++   .+....        .....+..+..... . .++..+..
T Consensus       104 ~~~vI~ivG~-~G~GKTT~~~~LA~~l~~~g~kVllid---~D~~r~--------~a~~ql~~~~~~~~-~-~~l~vip~  169 (320)
T 1zu4_A          104 RLNIFMLVGV-NGTGKTTSLAKMANYYAELGYKVLIAA---ADTFRA--------GATQQLEEWIKTRL-N-NKVDLVKA  169 (320)
T ss_dssp             SCEEEEEESS-TTSSHHHHHHHHHHHHHHTTCCEEEEE---CCCSCH--------HHHHHHHHHHTTTS-C-TTEEEECC
T ss_pred             CCeEEEEECC-CCCCHHHHHHHHHHHHHHCCCeEEEEe---CCCcch--------hHHHHHHHHHhccc-c-CCceEEeC
Confidence            4679999998 999999999999999999999999998   333211        11112222221000 0 12221111


Q ss_pred             cCCCChhhhhhhcCCCCCHHHHHHHHH-HhhcCCCeEEEeccCcccCccCCCCchHHHH-----H-----HhCCCEEEEE
Q psy14904         85 KYPISPYTSSNLENRIINTSHIINCYN-YLSNLTDVIILEGIGGFSVPFHDNENSADLA-----E-----KLGLPIILVI  153 (233)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~-----~-----~~~~~vllV~  153 (233)
                      .. .....          ...+.+.+. .++++||+|||||||.+...  . ....++.     .     .....+++|.
T Consensus       170 ~~-~~~~p----------~~~~~~~l~~~~~~~yD~VIIDTpg~l~~~--~-~l~~eL~~~~~vi~~~~p~~~d~vllVl  235 (320)
T 1zu4_A          170 NK-LNADP----------ASVVFDAIKKAKEQNYDLLLIDTAGRLQNK--T-NLMAELEKMNKIIQQVEKSAPHEVLLVI  235 (320)
T ss_dssp             SS-TTCCH----------HHHHHHHHHHHHHTTCSEEEEECCCCGGGH--H-HHHHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred             CC-CCCCH----------HHHHHHHHHHHHhcCCCEEEEcCCCccccc--H-HHHHHHHHHHHHHhcccCCCCceEEEEE
Confidence            11 01000          112233333 34679999999999876421  0 0111111     1     0123568888


Q ss_pred             cCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904        154 DLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL  209 (233)
Q Consensus       154 ~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl  209 (233)
                      ++..+ . +.+...+.+ +..+++.|+|+|+++ +... ..... .+...++.|+.
T Consensus       236 ~a~~~-~-~~l~~~~~~-~~~~~i~GvVltk~d-~~~~-~g~~~-~~~~~~~~Pi~  285 (320)
T 1zu4_A          236 DATTG-Q-NGVIQAEEF-SKVADVSGIILTKMD-STSK-GGIGL-AIKELLNIPIK  285 (320)
T ss_dssp             EGGGT-H-HHHHHHHHH-TTTSCCCEEEEECGG-GCSC-TTHHH-HHHHHHCCCEE
T ss_pred             ECCCc-H-HHHHHHHHH-hhcCCCcEEEEeCCC-CCCc-hhHHH-HHHHHHCcCEE
Confidence            87643 2 333333333 345789999999998 4322 22333 34445688875

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=99.48  E-value=8.5e-13  Score=114.68  Aligned_cols=165  Identities=18%  Similarity=0.169  Sum_probs=95.3

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeec
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFK   85 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~   85 (233)
                      .++|+++|. +|+||||++.+||.+|+++|++|++++   +++..    +    .....+..+...     ..+ ++ +.
T Consensus       100 p~vIlivG~-~G~GKTTt~~kLA~~l~~~G~kVllv~---~D~~R----~----aa~eqL~~~~~~-----~gv-pv-~~  160 (443)
T 3dm5_A          100 PTILLMVGI-QGSGKTTTVAKLARYFQKRGYKVGVVC---SDTWR----P----GAYHQLRQLLDR-----YHI-EV-FG  160 (443)
T ss_dssp             SEEEEEECC-TTSSHHHHHHHHHHHHHTTTCCEEEEE---CCCSS----T----HHHHHHHHHHGG-----GTC-EE-EC
T ss_pred             CeEEEEECc-CCCCHHHHHHHHHHHHHHCCCeEEEEe---CCCcc----h----hHHHHHHHHHHh-----cCC-cE-Ee
Confidence            568999998 999999999999999999999999998   43332    1    122333333211     011 11 11


Q ss_pred             CCCChhhhhhhcCCCCC-HHHHHHHHHHhh-cCCCeEEEeccCcccCccCCCCchHHHHH---Hh-CCCEEEEEcCCCCc
Q psy14904         86 YPISPYTSSNLENRIIN-TSHIINCYNYLS-NLTDVIILEGIGGFSVPFHDNENSADLAE---KL-GLPIILVIDLKIGC  159 (233)
Q Consensus        86 ~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~-~~~D~vlID~~~g~~~p~~~~~~~~~l~~---~~-~~~vllV~~~~~~~  159 (233)
                      .+..           .+ .+.+.+.++.+. ++||+|||||||....   ......++..   .. ...+++|.++..+.
T Consensus       161 ~~~~-----------~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~---d~~lm~el~~i~~~~~pd~vlLVvDA~~gq  226 (443)
T 3dm5_A          161 NPQE-----------KDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKE---DKALIEEMKQISNVIHPHEVILVIDGTIGQ  226 (443)
T ss_dssp             CTTC-----------CCHHHHHHHHHHHHHHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHHHCCSEEEEEEEGGGGG
T ss_pred             cCCC-----------CCHHHHHHHHHHHHHhCCCCEEEEECCCcccc---hHHHHHHHHHHHHhhcCceEEEEEeCCCch
Confidence            1000           11 123456666655 3699999999976532   1111222221   11 23588898876531


Q ss_pred             HHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904        160 INNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL  209 (233)
Q Consensus       160 ~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl  209 (233)
                        ++....+.+. ..+++.|+|+||++ ... . ......+...++.|+.
T Consensus       227 --~a~~~a~~f~-~~~~i~gVIlTKlD-~~~-~-gG~~ls~~~~~g~PI~  270 (443)
T 3dm5_A          227 --QAYNQALAFK-EATPIGSIIVTKLD-GSA-K-GGGALSAVAATGAPIK  270 (443)
T ss_dssp             --GHHHHHHHHH-HSCTTEEEEEECCS-SCS-S-HHHHHHHHHTTCCCEE
T ss_pred             --hHHHHHHHHH-hhCCCeEEEEECCC-Ccc-c-ccHHHHHHHHHCCCEE
Confidence              2233334433 34678899999998 432 1 2233333445788885

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=99.48  E-value=1.8e-12  Score=107.71  Aligned_cols=164  Identities=15%  Similarity=0.101  Sum_probs=95.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHH---hCCCcccccceeee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKY---SNSLYEFTKLINPY   82 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~---~~~~~~~~~~~~~~   82 (233)
                      .++++++| ++|+||||++.+||..++++|++|++++   .+++..        .....+..+   .+++         +
T Consensus        98 ~~vi~i~G-~~G~GKTT~~~~la~~~~~~g~~v~l~~---~D~~r~--------~a~~ql~~~~~~~~v~---------v  156 (297)
T 1j8m_F           98 PYVIMLVG-VQGTGKTTTAGKLAYFYKKKGFKVGLVG---ADVYRP--------AALEQLQQLGQQIGVP---------V  156 (297)
T ss_dssp             SEEEEEEC-SSCSSTTHHHHHHHHHHHHTTCCEEEEE---CCCSSS--------HHHHHHHHHHHHHTCC---------E
T ss_pred             CeEEEEEC-CCCCCHHHHHHHHHHHHHHCCCeEEEEe---cCCCCH--------HHHHHHHHHhccCCeE---------E
Confidence            56788886 5999999999999999999999999998   333321        111112221   2211         1


Q ss_pred             eecCCCChhhhhhhcCCCCCH-HHHHHHHHHhh-cCCCeEEEeccCcccCccCCCCchHHH----HHHhCCCEEEEEcCC
Q psy14904         83 LFKYPISPYTSSNLENRIINT-SHIINCYNYLS-NLTDVIILEGIGGFSVPFHDNENSADL----AEKLGLPIILVIDLK  156 (233)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~l~-~~~D~vlID~~~g~~~p~~~~~~~~~l----~~~~~~~vllV~~~~  156 (233)
                       +..+..           .+. +.+.+.+++++ ++||+|||||||....+.... ...++    .......+++|+++.
T Consensus       157 -~~~~~~-----------~~p~~~~~~~l~~~~~~~~D~ViIDTpg~~~~~~~~~-l~~el~~i~~~~~~d~vllVvda~  223 (297)
T 1j8m_F          157 -YGEPGE-----------KDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAA-LLEEMKNIYEAIKPDEVTLVIDAS  223 (297)
T ss_dssp             -ECCTTC-----------CCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHH-HHHHHHHHHHHHCCSEEEEEEEGG
T ss_pred             -EecCCC-----------CCHHHHHHHHHHHHHhCCCCEEEEeCCCCcccccHHH-HHHHHHHHHHHhcCCEEEEEeeCC
Confidence             111100           122 23456777776 799999999987653101000 11111    112234688888775


Q ss_pred             CCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904        157 IGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL  209 (233)
Q Consensus       157 ~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl  209 (233)
                      .+  .++....+.+.+ ++++.|+|+||++ .... . .....+...++.|+.
T Consensus       224 ~g--~~~~~~~~~~~~-~~~i~gvVlnk~D-~~~~-~-g~~~~~~~~~~~pi~  270 (297)
T 1j8m_F          224 IG--QKAYDLASKFNQ-ASKIGTIIITKMD-GTAK-G-GGALSAVAATGATIK  270 (297)
T ss_dssp             GG--GGHHHHHHHHHH-TCTTEEEEEECGG-GCTT-H-HHHHHHHHTTTCCEE
T ss_pred             ch--HHHHHHHHHHHh-hCCCCEEEEeCCC-CCcc-h-HHHHHHHHHHCcCEE
Confidence            32  233434444443 5888999999998 4322 1 223345556788886

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=99.46  E-value=1.2e-12  Score=113.57  Aligned_cols=166  Identities=15%  Similarity=0.130  Sum_probs=95.2

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeee
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLF   84 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~   84 (233)
                      +.++|+++|. +|+||||++.+||..++.+|++|++++   .+...    +    .....+..+.. .    .++..+..
T Consensus        97 ~~~vi~i~G~-~GsGKTT~~~~LA~~l~~~g~~Vllvd---~D~~r----~----aa~~qL~~~~~-~----~gv~v~~~  159 (425)
T 2ffh_A           97 DRNLWFLVGL-QGSGKTTTAAKLALYYKGKGRRPLLVA---ADTQR----P----AAREQLRLLGE-K----VGVPVLEV  159 (425)
T ss_dssp             SSEEEEEECC-TTSSHHHHHHHHHHHHHTTTCCEEEEE---CCSSC----H----HHHHHHHHHHH-H----HTCCEEEC
T ss_pred             CCeEEEEECC-CCCCHHHHHHHHHHHHHHcCCeEEEee---ccccC----c----hhHHHHHHhcc-c----CCccEEec
Confidence            3568889875 999999999999999999999999998   33321    1    11111222110 0    01111111


Q ss_pred             cCCCChhhhhhhcCCCCCHHH-HHHHHHHhh-cCCCeEEEeccCcccCccCCCCchHHHHHH----hCCCEEEEEcCCCC
Q psy14904         85 KYPISPYTSSNLENRIINTSH-IINCYNYLS-NLTDVIILEGIGGFSVPFHDNENSADLAEK----LGLPIILVIDLKIG  158 (233)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~-l~~~~~~l~-~~~D~vlID~~~g~~~p~~~~~~~~~l~~~----~~~~vllV~~~~~~  158 (233)
                      ...             .+... +.+.+++++ ++||+|||||||.+..   ......+++..    ...++++|.++..+
T Consensus       160 ~~~-------------~~p~~i~~~~l~~~~~~~~DvVIIDTaG~l~~---d~~l~~el~~i~~~~~pd~vlLVvDa~tg  223 (425)
T 2ffh_A          160 MDG-------------ESPESIRRRVEEKARLEARDLILVDTAGRLQI---DEPLMGELARLKEVLGPDEVLLVLDAMTG  223 (425)
T ss_dssp             CTT-------------CCHHHHHHHHHHHHHHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHHHCCSEEEEEEEGGGT
T ss_pred             CCC-------------CCHHHHHHHHHHHHHHCCCCEEEEcCCCcccc---cHHHHHHHHHhhhccCCceEEEEEeccch
Confidence            100             12222 356777764 8999999999987532   11112222211    24578899887542


Q ss_pred             cHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904        159 CINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL  209 (233)
Q Consensus       159 ~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl  209 (233)
                        .++....+.+. ..+++.|+|+|+++ .... . .....+.+.+|.|+.
T Consensus       224 --q~av~~a~~f~-~~l~i~GVIlTKlD-~~~~-~-g~alsi~~~~g~PI~  268 (425)
T 2ffh_A          224 --QEALSVARAFD-EKVGVTGLVLTKLD-GDAR-G-GAALSARHVTGKPIY  268 (425)
T ss_dssp             --THHHHHHHHHH-HHTCCCEEEEESGG-GCSS-C-HHHHHHHHHHCCCEE
T ss_pred             --HHHHHHHHHHH-hcCCceEEEEeCcC-Cccc-H-HHHHHHHHHHCCCEE
Confidence              33444444433 24678999999998 4322 1 223334445688854

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=99.42  E-value=6.2e-12  Score=104.40  Aligned_cols=163  Identities=15%  Similarity=0.107  Sum_probs=93.6

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHH---HhCCCcccccceee
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNK---YSNSLYEFTKLINP   81 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~---~~~~~~~~~~~~~~   81 (233)
                      +.++++++| ++|+||||++.+||..++..|.+|++++   .+.+.    +    .....+..   ..++        ..
T Consensus        97 ~~~~i~i~g-~~G~GKTT~~~~la~~~~~~~~~v~l~~---~d~~~----~----~~~~ql~~~~~~~~l--------~~  156 (295)
T 1ls1_A           97 DRNLWFLVG-LQGSGKTTTAAKLALYYKGKGRRPLLVA---ADTQR----P----AAREQLRLLGEKVGV--------PV  156 (295)
T ss_dssp             SSEEEEEEC-CTTTTHHHHHHHHHHHHHHTTCCEEEEE---CCSSC----H----HHHHHHHHHHHHHTC--------CE
T ss_pred             CCeEEEEEC-CCCCCHHHHHHHHHHHHHHcCCeEEEec---CCccc----H----hHHHHHHHhcccCCe--------EE
Confidence            356899996 5999999999999999999999999998   33321    1    11111111   1221        11


Q ss_pred             eeecCCCChhhhhhhcCCCCCH-HHHHHHHHHhh-cCCCeEEEeccCcccCccCCCCchHHHHHH----hCCCEEEEEcC
Q psy14904         82 YLFKYPISPYTSSNLENRIINT-SHIINCYNYLS-NLTDVIILEGIGGFSVPFHDNENSADLAEK----LGLPIILVIDL  155 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~l~-~~~D~vlID~~~g~~~p~~~~~~~~~l~~~----~~~~vllV~~~  155 (233)
                      +....+             ... +.++..++.+. .+||+|||||||....   .......+...    ....+++|.++
T Consensus       157 ~~~~~~-------------~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~---d~~~~~~l~~~~~~~~~~~~~lv~~~  220 (295)
T 1ls1_A          157 LEVMDG-------------ESPESIRRRVEEKARLEARDLILVDTAGRLQI---DEPLMGELARLKEVLGPDEVLLVLDA  220 (295)
T ss_dssp             EECCTT-------------CCHHHHHHHHHHHHHHHTCCEEEEECCCCSSC---CHHHHHHHHHHHHHHCCSEEEEEEEG
T ss_pred             EEcCCC-------------CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccc---cHHHHHHHHHHhhhcCCCEEEEEEeC
Confidence            111100             011 12355666664 7999999999976532   11111222111    13467778876


Q ss_pred             CCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904        156 KIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL  209 (233)
Q Consensus       156 ~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl  209 (233)
                      .. . .++....+.+.. .+++.|+|+|+++ ++.. ........ ..++.|+.
T Consensus       221 ~~-~-~~~~~~~~~~~~-~~~i~givlnk~d-~~~~-~g~~~~~~-~~~~~pi~  268 (295)
T 1ls1_A          221 MT-G-QEALSVARAFDE-KVGVTGLVLTKLD-GDAR-GGAALSAR-HVTGKPIY  268 (295)
T ss_dssp             GG-T-HHHHHHHHHHHH-HTCCCEEEEECGG-GCSS-CHHHHHHH-HHHCCCEE
T ss_pred             CC-c-HHHHHHHHHHhh-cCCCCEEEEECCC-CCcc-HHHHHHHH-HHHCcCEE
Confidence            53 2 334444444332 4778999999998 4332 22334443 45688886

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.38  E-value=5.7e-12  Score=111.45  Aligned_cols=166  Identities=11%  Similarity=0.106  Sum_probs=92.8

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeee
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLF   84 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~   84 (233)
                      +.++|+|+|. +|+||||++.+||.+++++|++|++++   .+++.    +    ....++......     ..+..+..
T Consensus       100 ~~~vI~ivG~-~GvGKTTl~~kLA~~l~~~G~kVllVd---~D~~r----~----aa~~qL~~~~~~-----~~i~v~~~  162 (504)
T 2j37_W          100 KQNVIMFVGL-QGSGKTTTCSKLAYYYQRKGWKTCLIC---ADTFR----A----GAFDQLKQNATK-----ARIPFYGS  162 (504)
T ss_dssp             --EEEEEECS-TTSSHHHHHHHHHHHHHHTTCCEEEEE---ECCSS----S----HHHHHHHHHHHH-----HTCCEEEC
T ss_pred             CCeEEEEECC-CCCCHHHHHHHHHHHHHhCCCeEEEEe---ccccc----h----hHHHHHHHHhhc-----cCceEEcc
Confidence            4568999988 899999999999999999999999998   33322    1    122333322110     01111111


Q ss_pred             cCCCChhhhhhhcCCCCCH-HHHHHHHHHhh-cCCCeEEEeccCcccCccCCCCchHHH---HH-HhCCCEEEEEcCCCC
Q psy14904         85 KYPISPYTSSNLENRIINT-SHIINCYNYLS-NLTDVIILEGIGGFSVPFHDNENSADL---AE-KLGLPIILVIDLKIG  158 (233)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~-~~l~~~~~~l~-~~~D~vlID~~~g~~~p~~~~~~~~~l---~~-~~~~~vllV~~~~~~  158 (233)
                      ..  .           .+. +.+.+.++.+. ++||++||||||.....   .....++   .. .....+++|+++..+
T Consensus       163 ~~--~-----------~dp~~i~~~al~~~~~~~~DvvIIDTpG~~~~~---~~l~~el~~~~~~i~pd~vllVvDa~~g  226 (504)
T 2j37_W          163 YT--E-----------MDPVIIASEGVEKFKNENFEIIIVDTSGRHKQE---DSLFEEMLQVANAIQPDNIVYVMDASIG  226 (504)
T ss_dssp             CC--C-----------SCHHHHHHHHHHHHHHTTCCEEEEEECCCCTTC---HHHHHHHHHHHHHHCCSEEEEEEETTCC
T ss_pred             CC--C-----------CCHHHHHHHHHHHHHHCCCcEEEEeCCCCcccc---hhHHHHHHHHHhhhcCceEEEEEecccc
Confidence            10  0           011 22345566654 78999999999875310   0011111   11 123467888888654


Q ss_pred             cHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904        159 CINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL  209 (233)
Q Consensus       159 ~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl  209 (233)
                      . + .....+.+.+. +++.|+|+||++ .... ....+. +.+.++.|+.
T Consensus       227 ~-~-~~~~a~~~~~~-~~i~gvVlNK~D-~~~~-~g~~l~-~~~~~g~PI~  271 (504)
T 2j37_W          227 Q-A-CEAQAKAFKDK-VDVASVIVTKLD-GHAK-GGGALS-AVAATKSPII  271 (504)
T ss_dssp             T-T-HHHHHHHHHHH-HCCCCEEEECTT-SCCC-CTHHHH-HHHHHCCCEE
T ss_pred             c-c-HHHHHHHHHhh-cCceEEEEeCCc-cccc-hHHHHH-HHHHhCCCeE
Confidence            2 1 22233333332 566799999998 4321 122333 4456788883

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=99.34  E-value=1.2e-11  Score=107.62  Aligned_cols=169  Identities=15%  Similarity=0.117  Sum_probs=94.0

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeec
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFK   85 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~   85 (233)
                      .++|+|+|. +|+||||++.+||..++++|++|++++   .+++.......+.     ......+++         + +.
T Consensus        99 ~~vI~ivG~-~GvGKTTla~~La~~l~~~G~kVllv~---~D~~r~~a~~qL~-----~~~~~~gv~---------v-~~  159 (432)
T 2v3c_C           99 QNVILLVGI-QGSGKTTTAAKLARYIQKRGLKPALIA---ADTYRPAAYEQLK-----QLAEKIHVP---------I-YG  159 (432)
T ss_dssp             CCCEEEECC-SSSSTTHHHHHHHHHHHHHHCCEEEEC---CSCCCTTGGGSSH-----HHHHHSSCC---------E-EC
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHHHHHHcCCeEEEEe---ccccCchHHHHHH-----HhhhccCcc---------e-Ee
Confidence            468999997 999999999999999999999999998   3333211001110     011112211         1 11


Q ss_pred             CCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHH----hCCCEEEEEcCCCCcHH
Q psy14904         86 YPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEK----LGLPIILVIDLKIGCIN  161 (233)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~----~~~~vllV~~~~~~~~~  161 (233)
                      .+.        .+.+. .+.+.+.++.+ ++||+|||||||....   .......+...    ....+++|+++..+.  
T Consensus       160 ~~~--------~~~dp-~~i~~~~l~~~-~~~D~vIIDT~G~~~~---~~~l~~~l~~i~~~~~~d~vllVvda~~g~--  224 (432)
T 2v3c_C          160 DET--------RTKSP-VDIVKEGMEKF-KKADVLIIDTAGRHKE---EKGLLEEMKQIKEITNPDEIILVIDGTIGQ--  224 (432)
T ss_dssp             CSS--------SCCSS-STTHHHHHHTT-SSCSEEEEECCCSCSS---HHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--
T ss_pred             cCC--------CCCCH-HHHHHHHHHHh-hCCCEEEEcCCCCccc---cHHHHHHHHHHHHHhcCcceeEEeeccccH--
Confidence            100        00000 01234566666 7999999999976531   00011111111    123577888765432  


Q ss_pred             HHHHHHHHHHhCCC-cEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecC
Q psy14904        162 NALLSLEAINSRGL-KLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIP  213 (233)
Q Consensus       162 ~~~~~~~~l~~~~~-~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP  213 (233)
                      ++....+.+. .++ ++.|+|+|+++ .... ...... +.+.++.|+. .+.
T Consensus       225 ~~~~~~~~~~-~~~~~i~gvVlnK~D-~~~~-~g~~l~-~~~~~~~pi~-~ig  272 (432)
T 2v3c_C          225 QAGIQAKAFK-EAVGEIGSIIVTKLD-GSAK-GGGALS-AVAETKAPIK-FIG  272 (432)
T ss_dssp             GHHHHHHHHH-TTSCSCEEEEEECSS-SCST-THHHHH-HHHHSSCCEE-EEC
T ss_pred             HHHHHHHHHh-hcccCCeEEEEeCCC-Cccc-hHHHHH-HHHHHCCCEE-Eee
Confidence            2333333333 456 78999999998 4321 122333 5556788875 553

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=99.29  E-value=3.4e-11  Score=104.53  Aligned_cols=167  Identities=17%  Similarity=0.156  Sum_probs=92.4

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeec
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFK   85 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~   85 (233)
                      .++|+++|. +|+||||++.+||.+|+++|++|++++   ++...    +    .....+..+....     .+ ++ +.
T Consensus        97 ~~vI~lvG~-~GsGKTTt~~kLA~~l~~~G~kVllv~---~D~~r----~----~a~eqL~~~~~~~-----gv-~~-~~  157 (433)
T 3kl4_A           97 PFIIMLVGV-QGSGKTTTAGKLAYFYKKRGYKVGLVA---ADVYR----P----AAYDQLLQLGNQI-----GV-QV-YG  157 (433)
T ss_dssp             SEEEEECCC-TTSCHHHHHHHHHHHHHHTTCCEEEEE---ECCSC----H----HHHHHHHHHHHTT-----TC-CE-EC
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHHHHHHcCCeEEEEe---cCccc----h----hHHHHHHHHHHhc-----CC-ce-ee
Confidence            568888887 899999999999999999999999988   33321    1    1122222221100     01 11 11


Q ss_pred             CCCChhhhhhhcCCCCCH-HHHHHHHHHhh-cCCCeEEEeccCcccCccCCCCchHHHH---HHh-CCCEEEEEcCCCCc
Q psy14904         86 YPISPYTSSNLENRIINT-SHIINCYNYLS-NLTDVIILEGIGGFSVPFHDNENSADLA---EKL-GLPIILVIDLKIGC  159 (233)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~-~~l~~~~~~l~-~~~D~vlID~~~g~~~p~~~~~~~~~l~---~~~-~~~vllV~~~~~~~  159 (233)
                      ....           .+. ....+.++.+. ++||+||||+||....+.. .....++.   ... ...+++|.++..+.
T Consensus       158 ~~~~-----------~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d-~~lm~el~~i~~~~~pd~vlLVlDa~~gq  225 (433)
T 3kl4_A          158 EPNN-----------QNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEE-TKLLEEMKEMYDVLKPDDVILVIDASIGQ  225 (433)
T ss_dssp             CTTC-----------SCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCT-THHHHHHHHHHHHHCCSEEEEEEEGGGGG
T ss_pred             cccc-----------CCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCC-HHHHHHHHHHHHhhCCcceEEEEeCccch
Confidence            1000           111 22345566554 6899999999976431111 11122222   222 24688888876531


Q ss_pred             HHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904        160 INNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL  209 (233)
Q Consensus       160 ~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl  209 (233)
                        ++....+.+.+ .+++.|+|+||++ ... .....+.... ..+.|+.
T Consensus       226 --~a~~~a~~f~~-~~~~~gVIlTKlD-~~a-~~G~als~~~-~~g~Pi~  269 (433)
T 3kl4_A          226 --KAYDLASRFHQ-ASPIGSVIITKMD-GTA-KGGGALSAVV-ATGATIK  269 (433)
T ss_dssp             --GGHHHHHHHHH-HCSSEEEEEECGG-GCS-CHHHHHHHHH-HHTCEEE
T ss_pred             --HHHHHHHHHhc-ccCCcEEEEeccc-ccc-cchHHHHHHH-HHCCCEE
Confidence              22233344332 3567899999998 332 2223334333 4688874

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=99.26  E-value=1.2e-10  Score=96.92  Aligned_cols=164  Identities=14%  Similarity=0.203  Sum_probs=90.7

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHH---hCCCcccccceee
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKY---SNSLYEFTKLINP   81 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~---~~~~~~~~~~~~~   81 (233)
                      +.++|+|+|. +|+||||++.+||..++..|.+|++++   .+...    .    .....+..+   .++        . 
T Consensus       103 ~~~vi~ivG~-~GsGKTTl~~~LA~~l~~~g~kV~lv~---~D~~r----~----~a~eqL~~~~~~~gl--------~-  161 (306)
T 1vma_A          103 PPFVIMVVGV-NGTGKTTSCGKLAKMFVDEGKSVVLAA---ADTFR----A----AAIEQLKIWGERVGA--------T-  161 (306)
T ss_dssp             SCEEEEEECC-TTSSHHHHHHHHHHHHHHTTCCEEEEE---ECTTC----H----HHHHHHHHHHHHHTC--------E-
T ss_pred             CCeEEEEEcC-CCChHHHHHHHHHHHHHhcCCEEEEEc---ccccc----H----HHHHHHHHHHHHcCC--------c-
Confidence            4679999998 999999999999999999999999987   33321    1    111112211   221        1 


Q ss_pred             eeecCCCChhhhhhhcCCCCCHHH-HHHHHH-HhhcCCCeEEEeccCcccCccCCCC--chHHHHHHh-------CCCEE
Q psy14904         82 YLFKYPISPYTSSNLENRIINTSH-IINCYN-YLSNLTDVIILEGIGGFSVPFHDNE--NSADLAEKL-------GLPII  150 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~-~l~~~~D~vlID~~~g~~~p~~~~~--~~~~l~~~~-------~~~vl  150 (233)
                      + +.....           .+..+ +.+.+. .+..+||+||||+|+...  ....+  ....+....       ...++
T Consensus       162 ~-~~~~s~-----------~~~~~v~~~al~~a~~~~~dvvIiDtpg~~~--~~~~l~~eL~~l~~~i~~~i~~~p~~vl  227 (306)
T 1vma_A          162 V-ISHSEG-----------ADPAAVAFDAVAHALARNKDVVIIDTAGRLH--TKKNLMEELRKVHRVVKKKIPDAPHETL  227 (306)
T ss_dssp             E-ECCSTT-----------CCHHHHHHHHHHHHHHTTCSEEEEEECCCCS--CHHHHHHHHHHHHHHGGGTCTTCCSEEE
T ss_pred             E-EecCCc-----------cCHHHHHHHHHHHHHhcCCCEEEEECCCchh--hHHHHHHHHHHHHHHHhhccCCCCcEEE
Confidence            1 111000           11111 223333 356799999999986421  11000  001111111       23468


Q ss_pred             EEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904        151 LVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL  209 (233)
Q Consensus       151 lV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl  209 (233)
                      +|.++.. . .+.+...+.+.+ ..++.|+|+|+++ ... .... .-.+...++.|+.
T Consensus       228 lVlda~t-~-~~~l~~a~~~~~-~~~i~gvVlTk~D-~~~-~gG~-~l~~~~~~~~Pi~  280 (306)
T 1vma_A          228 LVIDATT-G-QNGLVQAKIFKE-AVNVTGIILTKLD-GTA-KGGI-TLAIARELGIPIK  280 (306)
T ss_dssp             EEEEGGG-H-HHHHHHHHHHHH-HSCCCEEEEECGG-GCS-CTTH-HHHHHHHHCCCEE
T ss_pred             EEEECCC-C-HHHHHHHHHHHh-cCCCCEEEEeCCC-Ccc-chHH-HHHHHHHHCCCEE
Confidence            8887752 2 223333344333 3788999999998 432 2223 3334445688886

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=99.23  E-value=3.5e-10  Score=93.82  Aligned_cols=162  Identities=11%  Similarity=0.063  Sum_probs=91.7

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHH-cCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeee
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKK-RGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYL   83 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~-~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~   83 (233)
                      +.++++++|. +|+||||++.+||..++. +|++|++++   .++..    ..    ....+..+....     .+. . 
T Consensus       104 ~g~vi~lvG~-~GsGKTTl~~~LA~~l~~~~G~~V~lv~---~D~~r----~~----a~eqL~~~~~~~-----gl~-~-  164 (296)
T 2px0_A          104 HSKYIVLFGS-TGAGKTTTLAKLAAISMLEKHKKIAFIT---TDTYR----IA----AVEQLKTYAELL-----QAP-L-  164 (296)
T ss_dssp             CSSEEEEEES-TTSSHHHHHHHHHHHHHHTTCCCEEEEE---CCCSS----TT----HHHHHHHHHTTT-----TCC-C-
T ss_pred             CCcEEEEECC-CCCCHHHHHHHHHHHHHHhcCCEEEEEe---cCccc----ch----HHHHHHHHHHhc-----CCC-e-
Confidence            3568999998 899999999999999996 899999998   33321    11    112222222110     010 0 


Q ss_pred             ecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhC----CCEEEEEcCCCCc
Q psy14904         84 FKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLG----LPIILVIDLKIGC  159 (233)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~----~~vllV~~~~~~~  159 (233)
                      +..              .....+...+..+ .+||+|||||+|...  .. .....++.....    ..+++|.++.. .
T Consensus       165 ~~~--------------~~~~~l~~al~~~-~~~dlvIiDT~G~~~--~~-~~~~~el~~~l~~~~~~~~~lVl~at~-~  225 (296)
T 2px0_A          165 EVC--------------YTKEEFQQAKELF-SEYDHVFVDTAGRNF--KD-PQYIDELKETIPFESSIQSFLVLSATA-K  225 (296)
T ss_dssp             CBC--------------SSHHHHHHHHHHG-GGSSEEEEECCCCCT--TS-HHHHHHHHHHSCCCTTEEEEEEEETTB-C
T ss_pred             Eec--------------CCHHHHHHHHHHh-cCCCEEEEeCCCCCh--hh-HHHHHHHHHHHhhcCCCeEEEEEECCC-C
Confidence            000              0123456666665 789999999876532  11 111223333321    24567775543 3


Q ss_pred             HHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904        160 INNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL  209 (233)
Q Consensus       160 ~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl  209 (233)
                      .+.+....+.+.  .+++.|+|+|+++ .... ....... ...++.|+.
T Consensus       226 ~~~~~~~~~~~~--~l~~~giVltk~D-~~~~-~g~~~~~-~~~~~~pi~  270 (296)
T 2px0_A          226 YEDMKHIVKRFS--SVPVNQYIFTKID-ETTS-LGSVFNI-LAESKIGVG  270 (296)
T ss_dssp             HHHHHHHTTTTS--SSCCCEEEEECTT-TCSC-CHHHHHH-HHTCSCCCS
T ss_pred             HHHHHHHHHHHh--cCCCCEEEEeCCC-cccc-hhHHHHH-HHHHCcCEE
Confidence            333333333332  4677899999998 4322 2233443 445788875

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.13  E-value=1.5e-10  Score=93.86  Aligned_cols=37  Identities=8%  Similarity=-0.027  Sum_probs=34.2

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +...+.+++.|||+||||++.+|+.+++ +|++|+++|
T Consensus        12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd   48 (262)
T 1yrb_A           12 MASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVN   48 (262)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred             cceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEe
Confidence            4467888899999999999999999999 999999998

>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10

Probab=99.05  E-value=1.5e-09  Score=91.51  Aligned_cols=142  Identities=14%  Similarity=0.179  Sum_probs=91.6

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeee
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLF   84 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~   84 (233)
                      ..++|+++|+..++|||+++..|..++.++|+++.++.+-+++....               ...|.+.      +..  
T Consensus       168 ~~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tgqtg~li~---------------~~~gv~~------D~~--  224 (350)
T 2g0t_A          168 KIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQTGILIG---------------ADAGYVI------DAV--  224 (350)
T ss_dssp             CSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECSHHHHHTT---------------CSEECCG------GGS--
T ss_pred             cceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccCceeeeec---------------cCCCCCC------Cce--
Confidence            46899999999999999999999999999999999987332211100               0011110      100  


Q ss_pred             cCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEc-CC-------
Q psy14904         85 KYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVID-LK-------  156 (233)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~-~~-------  156 (233)
                         ..++.+...       +.+...++  ++++|+++|||++|+..|..... .+.+........++++. ++       
T Consensus       225 ---~~~~~ag~~-------e~~i~~~~--~~~~D~ivVEGqGgl~~P~~~~v-~~~ll~g~~p~~vIl~h~~~r~~~~~~  291 (350)
T 2g0t_A          225 ---PADFVSGVV-------EKAVLKLE--KTGKEIVFVEGQGALRHPAYGQV-TLGLLYGSNPDVVFLVHDPSRDHFESF  291 (350)
T ss_dssp             ---BGGGHHHHH-------HHHHHHHH--HTTCSEEEEECCSCTTCTTTHHH-HHHHHHHHCCSEEEEECCTTCSSCTTC
T ss_pred             ---ecchhhHHH-------HhhHHHhh--hcCCCEEEEccCeeccccCchHH-HHHHHcCCCCCEEEEEeCCCCccccCC
Confidence               112222211       22222333  67999999999999998864321 45556655545555543 22       


Q ss_pred             ----C-CcHHHHHHHHHHHHhCCCcEEEEE-Ecc
Q psy14904        157 ----I-GCINNALLSLEAINSRGLKLIGWV-ANH  184 (233)
Q Consensus       157 ----~-~~~~~~~~~~~~l~~~~~~i~GiV-lN~  184 (233)
                          . .++++....++.+.  +.+++|++ +|.
T Consensus       292 ~~~~~~~~i~~~i~~ie~l~--~~~V~gi~~lN~  323 (350)
T 2g0t_A          292 PEIPKKPDFEEERRLIETLS--NAKVIGGVSLNG  323 (350)
T ss_dssp             TTSSCCCCHHHHHHHHHHSS--SCEEEEEECSSC
T ss_pred             CcccCCcCHHHHHHHHHHhc--CCcEEEEEEcCc
Confidence                3 57787777777765  78999999 995

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=98.92  E-value=4.9e-09  Score=83.05  Aligned_cols=38  Identities=13%  Similarity=0.100  Sum_probs=34.3

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..+...+.+.||||||||+++++|..++++|++|++++
T Consensus         4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d   41 (228)
T 2r8r_A            4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGV   41 (228)
T ss_dssp             CCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEE
Confidence            35666788889999999999999999999999999988

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=98.74  E-value=9.6e-08  Score=81.09  Aligned_cols=37  Identities=27%  Similarity=0.227  Sum_probs=33.9

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +..+|+|+|. +|+||||++.+|+..++.+|++|++++
T Consensus        78 ~~~~I~i~G~-~G~GKSTl~~~L~~~l~~~g~kV~vi~  114 (355)
T 3p32_A           78 NAHRVGITGV-PGVGKSTAIEALGMHLIERGHRVAVLA  114 (355)
T ss_dssp             CSEEEEEECC-TTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CceEEEEECC-CCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence            4568888887 999999999999999999999999987

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=98.68  E-value=1.7e-07  Score=71.05  Aligned_cols=38  Identities=16%  Similarity=0.184  Sum_probs=34.3

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ++|+++.|+|. .|+||||++..|+..|.++|++|.+++
T Consensus         2 ~~~~~i~i~G~-sGsGKTTl~~~L~~~l~~~g~~v~~ik   39 (169)
T 1xjc_A            2 NAMNVWQVVGY-KHSGKTTLMEKWVAAAVREGWRVGTVK   39 (169)
T ss_dssp             --CCEEEEECC-TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCEEEEEECC-CCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence            35789999996 799999999999999999999999998

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.55  E-value=2.8e-06  Score=71.22  Aligned_cols=163  Identities=16%  Similarity=0.147  Sum_probs=88.8

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHH---HHHhCCCcccccceee
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLL---NKYSNSLYEFTKLINP   81 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~---~~~~~~~~~~~~~~~~   81 (233)
                      +..++++.|. .|+||||+...|+..+...|.+|.+..   .+....        .....+   ....|+.         
T Consensus       128 ~g~vi~lvG~-nGaGKTTll~~Lag~l~~~~g~V~l~g---~D~~r~--------~a~eql~~~~~~~gv~---------  186 (328)
T 3e70_C          128 KPYVIMFVGF-NGSGKTTTIAKLANWLKNHGFSVVIAA---SDTFRA--------GAIEQLEEHAKRIGVK---------  186 (328)
T ss_dssp             SSEEEEEECC-TTSSHHHHHHHHHHHHHHTTCCEEEEE---ECCSST--------THHHHHHHHHHHTTCE---------
T ss_pred             CCeEEEEECC-CCCCHHHHHHHHHHHHHhcCCEEEEEe---eccccc--------chHHHHHHHHHHcCce---------
Confidence            4568999999 999999999999999999999999876   222211        112222   2222311         


Q ss_pred             eeecC-CCChhhhhhhcCCCCCHHHHHHHHHH-hhcCCCeEEEeccCcccCccCCCCchHH---HHHHh-CCCEEEEEcC
Q psy14904         82 YLFKY-PISPYTSSNLENRIINTSHIINCYNY-LSNLTDVIILEGIGGFSVPFHDNENSAD---LAEKL-GLPIILVIDL  155 (233)
Q Consensus        82 ~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~-l~~~~D~vlID~~~g~~~p~~~~~~~~~---l~~~~-~~~vllV~~~  155 (233)
                      +.... ...|..            .+.+.+.. ...++|+++||+++....  . .....+   ++..+ ..+.+++.++
T Consensus       187 ~v~q~~~~~p~~------------~v~e~l~~~~~~~~d~vliDtaG~~~~--~-~~l~~eL~~i~ral~~de~llvLDa  251 (328)
T 3e70_C          187 VIKHSYGADPAA------------VAYDAIQHAKARGIDVVLIDTAGRSET--N-RNLMDEMKKIARVTKPNLVIFVGDA  251 (328)
T ss_dssp             EECCCTTCCHHH------------HHHHHHHHHHHHTCSEEEEEECCSCCT--T-TCHHHHHHHHHHHHCCSEEEEEEEG
T ss_pred             EEeccccCCHHH------------HHHHHHHHHHhccchhhHHhhccchhH--H-HHHHHHHHHHHHHhcCCCCEEEEec
Confidence            11111 111111            12333322 235899999999876431  1 111122   22222 2356777775


Q ss_pred             CCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904        156 KIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL  209 (233)
Q Consensus       156 ~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl  209 (233)
                      ..+  .++....+.+.+ ..++-++|+|+++ .. ......+..+. .++.|+.
T Consensus       252 ~t~--~~~~~~~~~~~~-~~~it~iilTKlD-~~-a~~G~~l~~~~-~~~~pi~  299 (328)
T 3e70_C          252 LAG--NAIVEQARQFNE-AVKIDGIILTKLD-AD-ARGGAALSISY-VIDAPIL  299 (328)
T ss_dssp             GGT--THHHHHHHHHHH-HSCCCEEEEECGG-GC-SCCHHHHHHHH-HHTCCEE
T ss_pred             HHH--HHHHHHHHHHHH-hcCCCEEEEeCcC-Cc-cchhHHHHHHH-HHCCCEE
Confidence            433  234444444432 2456689999998 42 22233344433 4588876

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.44  E-value=3.3e-06  Score=74.20  Aligned_cols=165  Identities=18%  Similarity=0.240  Sum_probs=86.8

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHH---HhCCCcccccceeee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNK---YSNSLYEFTKLINPY   82 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~---~~~~~~~~~~~~~~~   82 (233)
                      ..+|+|.|. +|+||||+...|+..+...|.+|.+..   .+...        ......+..   ..++         ++
T Consensus       293 GeVI~LVGp-NGSGKTTLl~~LAgll~~~~G~V~l~g---~D~~r--------~aa~eQL~~~~~r~~I---------~v  351 (503)
T 2yhs_A          293 PFVILMVGV-NGVGKTTTIGKLARQFEQQGKSVMLAA---GDTFR--------AAAVEQLQVWGQRNNI---------PV  351 (503)
T ss_dssp             TEEEEEECC-TTSSHHHHHHHHHHHHHHTTCCEEEEC---CCTTC--------HHHHHHHHHHHHHHTC---------CE
T ss_pred             CeEEEEECC-CcccHHHHHHHHHHHhhhcCCeEEEec---Ccccc--------hhhHHHHHHHHHhcCc---------eE
Confidence            468999999 899999999999999999899998865   21211        001111111   1121         11


Q ss_pred             eecCC-CChhhhhhhcCCCCCHHHHHHHHHH-hhcCCCeEEEeccCcccCc--cCCCC-chHHHHHHh--CCC--EEEEE
Q psy14904         83 LFKYP-ISPYTSSNLENRIINTSHIINCYNY-LSNLTDVIILEGIGGFSVP--FHDNE-NSADLAEKL--GLP--IILVI  153 (233)
Q Consensus        83 ~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~-l~~~~D~vlID~~~g~~~p--~~~~~-~~~~l~~~~--~~~--vllV~  153 (233)
                      .+... ..+            ...+.+.+.. ..++||+||||++|....-  +...+ ....++..+  ..|  +++|.
T Consensus       352 V~Q~~~~~p------------~~tV~e~l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvL  419 (503)
T 2yhs_A          352 IAQHTGADS------------ASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTI  419 (503)
T ss_dssp             ECCSTTCCH------------HHHHHHHHHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEE
T ss_pred             EecccCcCH------------HHHHHHHHHHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEe
Confidence            22111 011            1123333332 3478999999999775321  00000 011112211  123  67788


Q ss_pred             cCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904        154 DLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL  209 (233)
Q Consensus       154 ~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl  209 (233)
                      ++..+ . +.+...+.+.+ .+.+-|+|+|+.+ .. ......+.. ...++.|+.
T Consensus       420 DattG-q-~al~~ak~f~~-~~~itgvIlTKLD-~t-akgG~~lsi-~~~~~~PI~  469 (503)
T 2yhs_A          420 DASTG-Q-NAVSQAKLFHE-AVGLTGITLTKLD-GT-AKGGVIFSV-ADQFGIPIR  469 (503)
T ss_dssp             EGGGT-H-HHHHHHHHHHH-HTCCSEEEEECGG-GC-SCCTHHHHH-HHHHCCCEE
T ss_pred             cCccc-H-HHHHHHHHHHh-hcCCCEEEEEcCC-Cc-ccccHHHHH-HHHHCCCEE
Confidence            76543 2 23333444432 2456689999998 32 222333443 334688876

>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*

Probab=98.40  E-value=1.7e-06  Score=76.92  Aligned_cols=175  Identities=13%  Similarity=0.077  Sum_probs=95.1

Q ss_pred             ceeEEEE-eCCCCCcHHHHHHHHHHHHHHcCCeeeEEeee--------ecCcc------cCCCCCCccchHHHHHHHHhC
Q psy14904          6 FLHYFIT-GTNTNIGKTIISCALLSEFKKRGISCIGMKPI--------ASGAY------LNNKNKIWFNEDVNLLNKYSN   70 (233)
Q Consensus         6 ~~~i~i~-~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~--------~~~~~------~~~~~~~l~~~d~~~~~~~~~   70 (233)
                      +|.|+|+ |+-+++||+++++.|++.|+++|++|..+|++        ...+.      ..+ ..+-.+.|........+
T Consensus         3 ~~~i~v~gg~~s~~gk~~~~~~l~~~l~~~g~~v~~~k~~py~n~d~~~ms~~~hge~~vt~-dg~e~~~~~~~~~~~~~   81 (545)
T 1s1m_A            3 TNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTE-DGAETDLDLGHYERFIR   81 (545)
T ss_dssp             CEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECCSCSCGGGSCTTTSCCCEECT-TSCEECTHHHHHHHHCS
T ss_pred             ceEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeeeeccccccCCCCccCcccCCCeEECC-CCCeehhhhccceeeec
Confidence            5899999 99999999999999999999999999999965        12221      011 01111223333333333


Q ss_pred             CCcccccceeeeeecCCCChhhhhhhcCCCC----C-----HHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHH
Q psy14904         71 SLYEFTKLINPYLFKYPISPYTSSNLENRII----N-----TSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADL  141 (233)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l  141 (233)
                      .......++   ........-...++.+...    .     .+.+.+.+++++++||+||||++|...+ + ...-.++.
T Consensus        82 ~~l~~~~~~---~~g~~~~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~d~~i~e~~gt~~d-i-~~~~~~~~  156 (545)
T 1s1m_A           82 TKMSRRNNF---TTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGD-I-ESLPFLEA  156 (545)
T ss_dssp             SCCCGGGEE---EHHHHHHHHHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHTTCSEEEEEECSCTTS-S-TTHHHHHH
T ss_pred             eeecCCCCe---eccEEeeehhhhccccccccCceeehhHHHHHHHHHHHHHhccCCEEEEECCCChhh-h-hChHHHHH
Confidence            221110111   1000000001112223222    2     2446888889999999999999887632 1 12222333


Q ss_pred             HHH----hC-CCEEEEEcC--------CCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904        142 AEK----LG-LPIILVIDL--------KIGCINNALLSLEAINSRGLKLIGWVANHTQ  186 (233)
Q Consensus       142 ~~~----~~-~~vllV~~~--------~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~  186 (233)
                      +..    .+ ..++++--.        +.-..+-+.-+++.++..|+..-|+|+....
T Consensus       157 ~~q~~~~~~~~~~~~~h~~~~p~~~~~ge~ktkptq~sv~~l~s~gi~pd~lv~R~~~  214 (545)
T 1s1m_A          157 IRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDR  214 (545)
T ss_dssp             HHHHHHHHCTTSEEEEEEEECCEETTTTEECCHHHHHHHHHHHTTTCCCSEEEEEESS
T ss_pred             HHHHhHhhCcCcEEEEEEeCcccccCCCCcCCCCCcCCHHHHhCCCCccCEEEEeCCC
Confidence            322    22 123333221        1101122445677888888888888876654

>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A

Probab=98.36  E-value=2.2e-06  Score=76.16  Aligned_cols=176  Identities=12%  Similarity=0.094  Sum_probs=95.5

Q ss_pred             CceeEEEE-eCCCCCcHHHHHHHHHHHHHHcCCeeeEEeee--------ecCcc------cCCCCCCccchHHHHHHHHh
Q psy14904          5 NFLHYFIT-GTNTNIGKTIISCALLSEFKKRGISCIGMKPI--------ASGAY------LNNKNKIWFNEDVNLLNKYS   69 (233)
Q Consensus         5 ~~~~i~i~-~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~--------~~~~~------~~~~~~~l~~~d~~~~~~~~   69 (233)
                      |+|.|+|+ |+-+++||+++++.|++.|+++|++|..+|++        ...+.      ..+ ..+-.+-|.....+..
T Consensus        11 ~~~~i~v~gg~~s~~gk~~~~~~~~~~l~~~g~~v~~~k~~py~n~d~~~ms~~~hge~~vt~-dg~e~~~~~g~~~~~~   89 (550)
T 1vco_A           11 PRKYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKIDPYVNVDAGTMRPYEHGEVFVTA-DGAETDLDIGHYERFL   89 (550)
T ss_dssp             CCEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECSSCSSGGGSCSSTTSCCEECT-TCCEECTHHHHHHHHH
T ss_pred             ceeEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeEeecccccccCccccCcccCCceEECC-CCceehhhhccHHhcC
Confidence            46899999 99999999999999999999999999999964        11121      011 0111122333333333


Q ss_pred             CCCcccccceeeeeecCCCChhhhhhhcCCCC---------CHHHHHHHHHHhhc--CCCeEEEeccCcccCccCCCCch
Q psy14904         70 NSLYEFTKLINPYLFKYPISPYTSSNLENRII---------NTSHIINCYNYLSN--LTDVIILEGIGGFSVPFHDNENS  138 (233)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~l~~--~~D~vlID~~~g~~~p~~~~~~~  138 (233)
                      .+......++.   .......-...++.+...         -.+.+.+.++++++  +||+||||++|...+ + +.+-.
T Consensus        90 ~~~l~~~~~~~---~g~~~~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~d~~i~e~~gt~~d-i-~~~~~  164 (550)
T 1vco_A           90 DMDLSRGNNLT---TGQVYLSVIQKERRGEYLSQTVQVIPHITDEIKERIRKVAEEQKAEIVVVEVGGTVGD-I-ESLPF  164 (550)
T ss_dssp             TSCCCGGGEEE---HHHHHHHHHHHHHTTTTTTCCCCTTTHHHHHHHHHHHHHHHHTTCSEEEEEECSCTTS-S-TTHHH
T ss_pred             CcccCCCCCee---ccEEchhhhhhhcccccccCceEEhhHHHHHHHHHHHHHhcccCCCEEEEECCCChhH-h-hhHHH
Confidence            32211101110   000000000112222211         13456788888888  999999999877642 1 12223


Q ss_pred             HHHHHH----hC-CCEEEEEcC--------CCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904        139 ADLAEK----LG-LPIILVIDL--------KIGCINNALLSLEAINSRGLKLIGWVANHTQ  186 (233)
Q Consensus       139 ~~l~~~----~~-~~vllV~~~--------~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~  186 (233)
                      ++.+..    .+ ..++++--.        +....+-+..+++.++..++..-|+|+....
T Consensus       165 ~~~~rq~~~~~~~~~~~~~h~~~~p~~~~~~e~ktkptq~sv~~lrs~gi~pd~lvvR~~~  225 (550)
T 1vco_A          165 LEAIRQFRFDEGEGNTLYLHLTLVPYLETSEEFKTKPTQHSVATLRGVGIQPDILVLRSAR  225 (550)
T ss_dssp             HHHHHTHHHHHCTTSEEEEEEEECCEETTTTEECCHHHHHHHHHHHHTTCCCSEEEEEESS
T ss_pred             HHHHHHHhHhhCcCCEEEEEEeCeecccCCCCcCCCCcchhHHHHhcCCCccCEEEEeCCC
Confidence            333322    22 123332211        1111223455777888888888888887654

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=98.11  E-value=1.4e-05  Score=60.76  Aligned_cols=38  Identities=21%  Similarity=0.145  Sum_probs=34.3

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +|++++.|+|. .|+||||+...|+..+..+|++|..++
T Consensus         4 ~~~~~i~i~G~-sGsGKTTl~~~l~~~l~~~g~~v~~i~   41 (174)
T 1np6_A            4 TMIPLLAFAAW-SGTGKTTLLKKLIPALCARGIRPGLIK   41 (174)
T ss_dssp             -CCCEEEEECC-TTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CcceEEEEEeC-CCCCHHHHHHHHHHhccccCCceeEEe
Confidence            35788999996 899999999999999999999999988

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.90  E-value=0.00013  Score=61.76  Aligned_cols=36  Identities=19%  Similarity=0.279  Sum_probs=32.0

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..++.|++. +|+||||+|.+++..++++|.+|++++
T Consensus        63 G~ii~I~G~-pGsGKTtLal~la~~~~~~g~~vlyid   98 (356)
T 1u94_A           63 GRIVEIYGP-ESSGKTTLTLQVIAAAQREGKTCAFID   98 (356)
T ss_dssp             TSEEEEECS-TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence            346777765 999999999999999999999999998

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.87  E-value=0.00021  Score=60.10  Aligned_cols=37  Identities=22%  Similarity=0.239  Sum_probs=33.7

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +..+++++| ++|+||||+..+|+..+...|.+|.+++
T Consensus        55 ~~~~i~i~G-~~g~GKSTl~~~l~~~~~~~~~~v~v~~   91 (341)
T 2p67_A           55 NTLRLGVTG-TPGAGKSTFLEAFGMLLIREGLKVAVIA   91 (341)
T ss_dssp             CSEEEEEEE-CTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCEEEEEEc-CCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence            457889998 5999999999999999999999999987

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=97.75  E-value=0.00036  Score=59.26  Aligned_cols=36  Identities=25%  Similarity=0.256  Sum_probs=32.3

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..++.|++. +|+||||++.+++...++.|.+|++++
T Consensus        74 G~li~I~G~-pGsGKTtlal~la~~~~~~g~~vlyi~  109 (366)
T 1xp8_A           74 GRITEIYGP-ESGGKTTLALAIVAQAQKAGGTCAFID  109 (366)
T ss_dssp             TSEEEEEES-TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CcEEEEEcC-CCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence            356777776 999999999999999999999999998

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.73  E-value=0.00056  Score=53.05  Aligned_cols=33  Identities=15%  Similarity=0.001  Sum_probs=28.2

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..++.|+|. +|+||||++..++.   ..|.+|++++
T Consensus        20 G~~~~i~G~-~GsGKTtl~~~l~~---~~~~~v~~i~   52 (220)
T 2cvh_A           20 GVLTQVYGP-YASGKTTLALQTGL---LSGKKVAYVD   52 (220)
T ss_dssp             TSEEEEECS-TTSSHHHHHHHHHH---HHCSEEEEEE
T ss_pred             CEEEEEECC-CCCCHHHHHHHHHH---HcCCcEEEEE
Confidence            346777777 99999999999998   6788999987

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=97.61  E-value=0.00082  Score=61.90  Aligned_cols=88  Identities=13%  Similarity=0.026  Sum_probs=53.9

Q ss_pred             cCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhh
Q psy14904        115 NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFAN  194 (233)
Q Consensus       115 ~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~  194 (233)
                      +.|++.||||||...  +.  .......... .-+++|.++..+...++....+.+...+++++ +|+||++ ......+
T Consensus        80 ~~~~i~liDTPG~~d--f~--~~~~~~l~~a-D~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~i-lviNKiD-~~~~~~~  152 (704)
T 2rdo_7           80 EPHRINIIDTPGHVD--FT--IEVERSMRVL-DGAVMVYCAVGGVQPQSETVWRQANKYKVPRI-AFVNKMD-RMGANFL  152 (704)
T ss_pred             CceeEEEEeCCCccc--hH--HHHHHHHHHC-CEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEE-EEEeCCC-cccccHH
Confidence            468999999997632  11  0111222223 35788888776544445555566666788855 7899998 3333345


Q ss_pred             hhHHHHHhhcCCCce
Q psy14904        195 ENYIELTKYLNVTPL  209 (233)
Q Consensus       195 ~~~~~l~~~~~~pvl  209 (233)
                      ...+.+++.++.+.+
T Consensus       153 ~~~~~l~~~l~~~~~  167 (704)
T 2rdo_7          153 KVVNQIKTRLGANPV  167 (704)
T ss_pred             HHHHHHHHHhCCCce
Confidence            677788877775443

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.58  E-value=0.00098  Score=56.19  Aligned_cols=36  Identities=17%  Similarity=0.058  Sum_probs=32.7

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..++.|.|. +|+||||++.+++...++.|.+|++++
T Consensus        61 G~iv~I~G~-pGsGKTtLal~la~~~~~~g~~vlyi~   96 (349)
T 2zr9_A           61 GRVIEIYGP-ESSGKTTVALHAVANAQAAGGIAAFID   96 (349)
T ss_dssp             TSEEEEEES-TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence            456788887 999999999999999999999999998

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.49  E-value=0.00015  Score=55.20  Aligned_cols=36  Identities=17%  Similarity=0.277  Sum_probs=32.3

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      |+.|+|+|. +|+||||++..|+..|...|+++.+++
T Consensus         1 M~~I~i~G~-~GsGKsT~~~~L~~~l~~~g~~~~~~~   36 (194)
T 1nks_A            1 MKIGIVTGI-PGVGKSTVLAKVKEILDNQGINNKIIN   36 (194)
T ss_dssp             CEEEEEEEC-TTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHHHHHhcCceEEEEE
Confidence            467999999 999999999999999998898887774

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.47  E-value=0.0018  Score=54.66  Aligned_cols=36  Identities=22%  Similarity=0.110  Sum_probs=33.0

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..++.|.|. +|+||||++.+++..++..|.+|++++
T Consensus        61 G~i~~I~Gp-pGsGKSTLal~la~~~~~~gg~VlyId   96 (356)
T 3hr8_A           61 GRIVEIFGQ-ESSGKTTLALHAIAEAQKMGGVAAFID   96 (356)
T ss_dssp             TEEEEEEES-TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CcEEEEECC-CCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence            357888888 999999999999999999999999998

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=97.40  E-value=0.0023  Score=53.11  Aligned_cols=34  Identities=12%  Similarity=0.291  Sum_probs=30.7

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHc--CCeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKR--GISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~--G~~Vl~~d   42 (233)
                      ++.|.|. +|+||||+++.++...+++  |.+|+++|
T Consensus        30 iteI~G~-pGsGKTtL~Lq~~~~~~~~g~g~~vlyId   65 (333)
T 3io5_A           30 LLILAGP-SKSFKSNFGLTMVSSYMRQYPDAVCLFYD   65 (333)
T ss_dssp             EEEEEES-SSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             eEEEECC-CCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence            5677887 9999999999999999887  88999998

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=97.38  E-value=0.0016  Score=58.20  Aligned_cols=88  Identities=14%  Similarity=0.112  Sum_probs=60.7

Q ss_pred             cCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhh
Q psy14904        115 NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFAN  194 (233)
Q Consensus       115 ~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~  194 (233)
                      ++|-+=||||||...  +.   ....-+....+.+++|+++..|--.++....+.+.+.+++.+ +++||++ .......
T Consensus        98 ~~~~iNlIDTPGHvD--F~---~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i-~fINK~D-r~~ad~~  170 (548)
T 3vqt_A           98 RDRVVNLLDTPGHQD--FS---EDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVM-TFVNKMD-REALHPL  170 (548)
T ss_dssp             TTEEEEEECCCCGGG--CS---HHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEE-EEEECTT-SCCCCHH
T ss_pred             CCEEEEEEeCCCcHH--HH---HHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceE-EEEeccc-chhcchh
Confidence            357789999998752  11   122223333346888889887766677778888889999955 7899999 3334456


Q ss_pred             hhHHHHHhhcCCCce
Q psy14904        195 ENYIELTKYLNVTPL  209 (233)
Q Consensus       195 ~~~~~l~~~~~~pvl  209 (233)
                      ..++.+++.++..+.
T Consensus       171 ~~~~~i~~~l~~~~~  185 (548)
T 3vqt_A          171 DVMADIEQHLQIECA  185 (548)
T ss_dssp             HHHHHHHHHHTSEEE
T ss_pred             HhhhhhhhhcCCceE
Confidence            777888887775443

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=97.37  E-value=0.00033  Score=53.99  Aligned_cols=39  Identities=18%  Similarity=-0.004  Sum_probs=35.0

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeee
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPI   44 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~   44 (233)
                      +.++++++|. .|+||||.++.++..+..+|++|++++|.
T Consensus         7 ~g~i~v~~G~-mgsGKTT~ll~~a~r~~~~g~kV~v~k~~   45 (191)
T 1xx6_A            7 HGWVEVIVGP-MYSGKSEELIRRIRRAKIAKQKIQVFKPE   45 (191)
T ss_dssp             CCEEEEEECS-TTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCEEEEEECC-CCCcHHHHHHHHHHHHHHCCCEEEEEEec
Confidence            3567888888 89999999999999999999999999965

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=97.33  E-value=0.00034  Score=55.24  Aligned_cols=39  Identities=26%  Similarity=0.192  Sum_probs=34.2

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeee
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPI   44 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~   44 (233)
                      +...++++|. .|+||||.+..++..+..+|++|++++|.
T Consensus        11 ~G~i~litG~-mGsGKTT~ll~~~~r~~~~g~kVli~~~~   49 (223)
T 2b8t_A           11 IGWIEFITGP-MFAGKTAELIRRLHRLEYADVKYLVFKPK   49 (223)
T ss_dssp             CCEEEEEECS-TTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CcEEEEEECC-CCCcHHHHHHHHHHHHHhcCCEEEEEEec
Confidence            3457777777 99999999999999999999999999854

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.32  E-value=0.00017  Score=54.54  Aligned_cols=37  Identities=27%  Similarity=0.401  Sum_probs=32.9

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ||++++|+|. .|+||||++..|+..+...|+++..++
T Consensus         1 m~~~v~IvG~-SGsGKSTL~~~L~~~~~~~g~~~G~I~   37 (171)
T 2f1r_A            1 MSLILSIVGT-SDSGKTTLITRMMPILRERGLRVAVVK   37 (171)
T ss_dssp             --CEEEEEES-CHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CceEEEEECC-CCCCHHHHHHHHHHHhhhcCCceEEEE
Confidence            4688999995 899999999999999999999998887

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.31  E-value=0.00042  Score=52.66  Aligned_cols=36  Identities=25%  Similarity=0.313  Sum_probs=32.4

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ...|.++|. +|+||||++..|+..+...|+++.+++
T Consensus        13 ~~~i~l~G~-~GsGKsT~~~~L~~~l~~~~~~~~~~~   48 (186)
T 2yvu_A           13 GIVVWLTGL-PGSGKTTIATRLADLLQKEGYRVEVLD   48 (186)
T ss_dssp             CEEEEEECC-TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CcEEEEEcC-CCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence            457888888 999999999999999999999998886

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.27  E-value=0.00037  Score=56.16  Aligned_cols=37  Identities=24%  Similarity=0.384  Sum_probs=32.9

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +|+.|.|+|. +|+||||++..|+..|...|+.+.+++
T Consensus         3 ~~~lIvl~G~-pGSGKSTla~~La~~L~~~g~~~i~~~   39 (260)
T 3a4m_A            3 DIMLIILTGL-PGVGKSTFSKNLAKILSKNNIDVIVLG   39 (260)
T ss_dssp             CCEEEEEECC-TTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CCEEEEEEcC-CCCCHHHHHHHHHHHHHhCCCEEEEEC
Confidence            3668999999 999999999999999998999888665

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.26  E-value=0.00045  Score=53.45  Aligned_cols=36  Identities=17%  Similarity=0.146  Sum_probs=31.6

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.|.|+|. .|+||||++..|+..|...|++|..++
T Consensus         9 ~~~I~l~G~-~GsGKsT~~~~L~~~l~~~~~~v~~~~   44 (215)
T 1nn5_A            9 GALIVLEGV-DRAGKSTQSRKLVEALCAAGHRAELLR   44 (215)
T ss_dssp             CCEEEEEES-TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CcEEEEECC-CCCCHHHHHHHHHHHHHHcCCcEEEee
Confidence            457999999 999999999999999999999885554

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=97.26  E-value=0.00051  Score=52.49  Aligned_cols=37  Identities=24%  Similarity=0.179  Sum_probs=33.4

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeee
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPI   44 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~   44 (233)
                      ++++++|. .|+||||++..++..+..+|++|++++|.
T Consensus         4 ~i~vi~G~-~gsGKTT~ll~~~~~~~~~g~~v~~~~~~   40 (184)
T 2orw_A            4 KLTVITGP-MYSGKTTELLSFVEIYKLGKKKVAVFKPK   40 (184)
T ss_dssp             CEEEEEES-TTSSHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred             EEEEEECC-CCCCHHHHHHHHHHHHHHCCCeEEEEeec
Confidence            47888888 99999999999999999999999999854

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.09  E-value=0.0006  Score=52.51  Aligned_cols=38  Identities=24%  Similarity=0.451  Sum_probs=32.4

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+..+|+|+|. .|+||||++..|+..+...|..+.++|
T Consensus        23 ~~g~~i~l~G~-sGsGKSTl~~~La~~l~~~G~~~~~~d   60 (200)
T 3uie_A           23 QKGCVIWVTGL-SGSGKSTLACALNQMLYQKGKLCYILD   60 (200)
T ss_dssp             SCCEEEEEECS-TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEEECC-CCCCHHHHHHHHHHHHHhcCceEEEec
Confidence            44678999999 999999999999999997787766666

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=97.08  E-value=0.00077  Score=51.99  Aligned_cols=34  Identities=18%  Similarity=0.157  Sum_probs=28.8

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .++..+|.  |.||||.|+++|...+.+|+||+++.
T Consensus        30 ~i~v~tG~--GkGKTTaA~GlalRA~g~G~rV~~vQ   63 (196)
T 1g5t_A           30 IIIVFTGN--GKGKTTAAFGTAARAVGHGKNVGVVQ   63 (196)
T ss_dssp             CEEEEESS--SSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             eEEEECCC--CCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence            34555554  69999999999999999999999985

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=97.06  E-value=0.0055  Score=56.30  Aligned_cols=86  Identities=15%  Similarity=0.045  Sum_probs=52.2

Q ss_pred             CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhh
Q psy14904        116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANE  195 (233)
Q Consensus       116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~  195 (233)
                      ++.+.||||||...  +.  .......... .-+++|.++..+...+.....+.+...+++++ +|+||++ ........
T Consensus        76 ~~~i~liDTPG~~d--f~--~~~~~~l~~a-D~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD-~~~~~~~~  148 (691)
T 1dar_A           76 DHRINIIDTPGHVD--FT--IEVERSMRVL-DGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI-AFANKMD-KTGADLWL  148 (691)
T ss_dssp             TEEEEEECCCSSTT--CH--HHHHHHHHHC-SEEEEEEETTTCSCHHHHHHHHHHHHTTCCEE-EEEECTT-STTCCHHH
T ss_pred             CeEEEEEECcCccc--hH--HHHHHHHHHC-CEEEEEEECCCCcchhhHHHHHHHHHcCCCEE-EEEECCC-cccCCHHH
Confidence            67899999997632  10  0112222333 35778888765433344445555667788855 7899998 33333456


Q ss_pred             hHHHHHhhcCCCc
Q psy14904        196 NYIELTKYLNVTP  208 (233)
Q Consensus       196 ~~~~l~~~~~~pv  208 (233)
                      ..+.+++.++.+.
T Consensus       149 ~~~~l~~~l~~~~  161 (691)
T 1dar_A          149 VIRTMQERLGARP  161 (691)
T ss_dssp             HHHHHHHTTCCCE
T ss_pred             HHHHHHHHhCCCc
Confidence            6778888777543

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.03  E-value=0.00065  Score=51.51  Aligned_cols=30  Identities=20%  Similarity=0.301  Sum_probs=25.7

Q ss_pred             CCCCCceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          1 MINKNFLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      |-.+|++.|.|+|. +|+||||++..|+..+
T Consensus         1 m~~~~~~~I~l~G~-~GsGKsT~~~~L~~~l   30 (194)
T 1qf9_A            1 MEKSKPNVVFVLGG-PGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCCCCCEEEEEEES-TTSSHHHHHHHHHHHH
T ss_pred             CCCCcCcEEEEECC-CCCCHHHHHHHHHHHh
Confidence            55566788999999 9999999999998876

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.97  E-value=0.0015  Score=50.41  Aligned_cols=36  Identities=17%  Similarity=0.134  Sum_probs=31.2

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.|+|+|. .|+||||++..|+..|...++++-.+.
T Consensus        10 ~~~I~l~G~-~GsGKST~~~~L~~~l~~~~~~~~~~~   45 (212)
T 2wwf_A           10 GKFIVFEGL-DRSGKSTQSKLLVEYLKNNNVEVKHLY   45 (212)
T ss_dssp             SCEEEEEES-TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCEEEEEcC-CCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence            357999999 999999999999999998898885544

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=96.97  E-value=0.0014  Score=51.23  Aligned_cols=39  Identities=21%  Similarity=0.052  Sum_probs=34.6

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeee
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPI   44 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~   44 (233)
                      +.++.+++|. -|+||||.++.++..+..+|++|++++|.
T Consensus        27 ~G~l~vitG~-MgsGKTT~lL~~a~r~~~~g~kVli~k~~   65 (214)
T 2j9r_A           27 NGWIEVICGS-MFSGKSEELIRRVRRTQFAKQHAIVFKPC   65 (214)
T ss_dssp             SCEEEEEECS-TTSCHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCEEEEEECC-CCCcHHHHHHHHHHHHHHCCCEEEEEEec
Confidence            4467778887 89999999999999999999999999964

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=96.97  E-value=0.0031  Score=52.96  Aligned_cols=36  Identities=22%  Similarity=0.082  Sum_probs=29.8

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHH------cCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKK------RGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~------~G~~Vl~~d   42 (233)
                      ..++.|+|. +|+|||+++.+++...+.      .|.+|++++
T Consensus       122 G~i~~I~G~-~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~  163 (343)
T 1v5w_A          122 MAITEAFGE-FRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID  163 (343)
T ss_dssp             SEEEEEECC-TTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence            346777777 999999999999987554      578999998

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.95  E-value=0.0012  Score=50.12  Aligned_cols=34  Identities=21%  Similarity=0.184  Sum_probs=30.4

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .|.|+|. .|+||||++..|+..|...|+.+...|
T Consensus         2 ~I~l~G~-~GsGKsT~~~~L~~~l~~~g~~~i~~d   35 (195)
T 2pbr_A            2 LIAFEGI-DGSGKTTQAKKLYEYLKQKGYFVSLYR   35 (195)
T ss_dssp             EEEEECS-TTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence            5888998 999999999999999988899887665

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=96.95  E-value=0.014  Score=53.69  Aligned_cols=86  Identities=15%  Similarity=0.062  Sum_probs=57.3

Q ss_pred             CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhh
Q psy14904        116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANE  195 (233)
Q Consensus       116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~  195 (233)
                      +|-+=||||||...  +   ..-..-+....+.+++|+++..|--.++....+.+.+.+++.+ +++||++ ......+.
T Consensus        84 ~~~iNlIDTPGHvD--F---~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i-~~iNKiD-r~~a~~~~  156 (709)
T 4fn5_A           84 NYRVNVIDTPGHVD--F---TIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRI-VYVNKMD-RQGANFLR  156 (709)
T ss_dssp             CEEEEEECCCSCTT--C---HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEE-EEEECSS-STTCCHHH
T ss_pred             CEEEEEEeCCCCcc--c---HHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeE-EEEcccc-ccCccHHH
Confidence            46678999998752  1   1122223333457888899887766677778888888899954 7899999 32333456


Q ss_pred             hHHHHHhhcCCCc
Q psy14904        196 NYIELTKYLNVTP  208 (233)
Q Consensus       196 ~~~~l~~~~~~pv  208 (233)
                      ..+++++.++..+
T Consensus       157 ~~~ei~~~l~~~~  169 (709)
T 4fn5_A          157 VVEQIKKRLGHTP  169 (709)
T ss_dssp             HHHHHHHHHCSCE
T ss_pred             HHHHhhhhcccce
Confidence            6777777766433

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=96.94  E-value=0.017  Score=51.31  Aligned_cols=87  Identities=17%  Similarity=0.116  Sum_probs=51.8

Q ss_pred             CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhh
Q psy14904        116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANE  195 (233)
Q Consensus       116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~  195 (233)
                      ++.+.|+||||...  +..  ........ ..-+++|.++..+...+.....+.++..+++++ +|+||++ .......+
T Consensus        81 ~~~i~liDTPG~~d--f~~--~~~~~l~~-aD~allVvDa~~g~~~~t~~~~~~~~~~~iPii-vviNK~D-l~~~~~~~  153 (528)
T 3tr5_A           81 DYLINLLDTPGHAD--FTE--DTYRTLTA-VDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIM-TFINKMD-RDTRPSIE  153 (528)
T ss_dssp             TEEEEEECCCCSTT--CCH--HHHHGGGG-CSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEE-EEEECTT-SCCSCHHH
T ss_pred             CEEEEEEECCCchh--HHH--HHHHHHHh-CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEeCCC-CccccHHH
Confidence            57899999987531  110  11111122 235788888776544445556666777788854 7899998 32223345


Q ss_pred             hHHHHHhhcCCCce
Q psy14904        196 NYIELTKYLNVTPL  209 (233)
Q Consensus       196 ~~~~l~~~~~~pvl  209 (233)
                      .++.+++.++.++.
T Consensus       154 ~l~ei~~~l~~~~~  167 (528)
T 3tr5_A          154 LLDEIESILRIHCA  167 (528)
T ss_dssp             HHHHHHHHHCCEEE
T ss_pred             HHHHHHHhhCCCce
Confidence            56777777776443

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.92  E-value=0.00068  Score=51.27  Aligned_cols=27  Identities=26%  Similarity=0.391  Sum_probs=22.9

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      ++++.|.++|. +|+||||++..|+..|
T Consensus         3 ~~~~~i~l~G~-~GsGKst~a~~La~~l   29 (185)
T 3trf_A            3 KNLTNIYLIGL-MGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             --CCEEEEECS-TTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECC-CCCCHHHHHHHHHHHh
Confidence            45678999999 9999999999999877

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.91  E-value=0.0011  Score=51.15  Aligned_cols=33  Identities=12%  Similarity=0.044  Sum_probs=28.1

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGM   41 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~   41 (233)
                      +.|+|+|. +|+||||++..|+..|...| ++...
T Consensus         5 ~~I~i~G~-~GsGKsT~~~~L~~~l~~~g-~~~~~   37 (213)
T 2plr_A            5 VLIAFEGI-DGSGKSSQATLLKDWIELKR-DVYLT   37 (213)
T ss_dssp             EEEEEECC-TTSSHHHHHHHHHHHHTTTS-CEEEE
T ss_pred             eEEEEEcC-CCCCHHHHHHHHHHHHhhcC-CEEEe
Confidence            57888888 99999999999999998777 66443

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.91  E-value=0.0011  Score=50.09  Aligned_cols=35  Identities=20%  Similarity=0.321  Sum_probs=29.3

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.|+|+|. +|+||||++..|+..|..+|.+.-+++
T Consensus         4 ~~I~i~G~-~GsGKsT~~~~L~~~l~~~g~~~~~i~   38 (192)
T 1kht_A            4 KVVVVTGV-PGVGSTTSSQLAMDNLRKEGVNYKMVS   38 (192)
T ss_dssp             CEEEEECC-TTSCHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred             eEEEEECC-CCCCHHHHHHHHHHHHHhcCcceEEEe
Confidence            47889998 999999999999999988885554444

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.90  E-value=0.0014  Score=51.76  Aligned_cols=36  Identities=28%  Similarity=0.193  Sum_probs=32.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      -.++.|+|. +|+||||++.+++..+++.|.+|+++.
T Consensus        23 G~~~~i~G~-~GsGKTtl~~~~~~~~~~~~~~v~~~~   58 (247)
T 2dr3_A           23 RNVVLLSGG-PGTGKTIFSQQFLWNGLKMGEPGIYVA   58 (247)
T ss_dssp             TCEEEEEEC-TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CcEEEEECC-CCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence            347788888 999999999999999999999999987

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.88  E-value=0.00099  Score=50.25  Aligned_cols=36  Identities=25%  Similarity=0.283  Sum_probs=31.4

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHH-HcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFK-KRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~-~~G~~Vl~~d   42 (233)
                      .+.+++.|. +|+||||++..++..+. ..|+++.++.
T Consensus        38 g~~~~l~G~-~G~GKTtL~~~i~~~~~~~~g~~~~~~~   74 (180)
T 3ec2_A           38 GKGLTFVGS-PGVGKTHLAVATLKAIYEKKGIRGYFFD   74 (180)
T ss_dssp             CCEEEECCS-SSSSHHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred             CCEEEEECC-CCCCHHHHHHHHHHHHHHHcCCeEEEEE
Confidence            467888888 99999999999999998 7898888865

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.88  E-value=0.0018  Score=48.79  Aligned_cols=37  Identities=30%  Similarity=0.423  Sum_probs=32.1

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +...|.++|. .|+||||++..|+..|...|+++..+|
T Consensus         4 ~g~~i~l~G~-~GsGKST~~~~L~~~l~~~g~~~i~~d   40 (179)
T 2pez_A            4 RGCTVWLTGL-SGAGKTTVSMALEEYLVCHGIPCYTLD   40 (179)
T ss_dssp             CCEEEEEECC-TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCcEEEEECC-CCCCHHHHHHHHHHHHhhCCCcEEEEC
Confidence            3567889988 999999999999999988898887766

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=96.87  E-value=0.0075  Score=53.64  Aligned_cols=88  Identities=19%  Similarity=0.080  Sum_probs=51.6

Q ss_pred             cCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhh
Q psy14904        115 NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFAN  194 (233)
Q Consensus       115 ~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~  194 (233)
                      .++.+.|+||||...  +.  .......... .-+++|.++..+...+.....+.++..+++ .-+|+||++ .......
T Consensus        80 ~~~~i~liDTPG~~d--f~--~~~~~~l~~a-D~~IlVvDa~~g~~~~t~~~~~~~~~~~ip-iivviNK~D-l~~~~~~  152 (529)
T 2h5e_A           80 HDCLVNLLDTPGHED--FS--EDTYRTLTAV-DCCLMVIDAAKGVEDRTRKLMEVTRLRDTP-ILTFMNKLD-RDIRDPM  152 (529)
T ss_dssp             TTEEEEEECCCCSTT--CC--HHHHHGGGGC-SEEEEEEETTTCSCHHHHHHHHHHTTTTCC-EEEEEECTT-SCCSCHH
T ss_pred             CCeEEEEEECCCChh--HH--HHHHHHHHHC-CEEEEEEeCCccchHHHHHHHHHHHHcCCC-EEEEEcCcC-CccccHH
Confidence            367899999997631  11  0011111222 357888887655434455555666667888 457899998 3222234


Q ss_pred             hhHHHHHhhcCCCce
Q psy14904        195 ENYIELTKYLNVTPL  209 (233)
Q Consensus       195 ~~~~~l~~~~~~pvl  209 (233)
                      +..+.+++.++.+..
T Consensus       153 ~~~~~i~~~l~~~~~  167 (529)
T 2h5e_A          153 ELLDEVENELKIGCA  167 (529)
T ss_dssp             HHHHHHHHHHCCEEE
T ss_pred             HHHHHHHHHhCCCcc
Confidence            556777777665543

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.87  E-value=0.00062  Score=55.92  Aligned_cols=38  Identities=16%  Similarity=0.410  Sum_probs=30.3

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ++..+|+|+|. .|+||||+|..|+..|...|.++.+++
T Consensus         3 ~~~~iIgItG~-sGSGKSTva~~L~~~lg~~~~~~~vI~   40 (290)
T 1a7j_A            3 KKHPIISVTGS-SGAGTSTVKHTFDQIFRREGVKAVSIE   40 (290)
T ss_dssp             TTSCEEEEESC-C---CCTHHHHHHHHHHHHTCCEEEEE
T ss_pred             CCceEEEEECC-CCCCHHHHHHHHHHHHhhcCCCeeEee
Confidence            34568999998 999999999999999988888888887

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.87  E-value=0.0013  Score=50.47  Aligned_cols=35  Identities=26%  Similarity=0.457  Sum_probs=31.8

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.+++.|. +|+|||+++..++..+.++|.++.++.
T Consensus        55 ~~~~l~G~-~GtGKT~la~~i~~~~~~~~~~~~~~~   89 (202)
T 2w58_A           55 KGLYLHGS-FGVGKTYLLAAIANELAKRNVSSLIVY   89 (202)
T ss_dssp             CEEEEECS-TTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CeEEEECC-CCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence            67888888 999999999999999999999998875

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.84  E-value=0.0014  Score=54.16  Aligned_cols=37  Identities=16%  Similarity=0.163  Sum_probs=33.5

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +..+++|.|. +|+||||+...||..+...+.+|.+..
T Consensus       101 ~g~vi~lvG~-nGsGKTTll~~Lagll~~~~g~V~l~g  137 (304)
T 1rj9_A          101 KGRVVLVVGV-NGVGKTTTIAKLGRYYQNLGKKVMFCA  137 (304)
T ss_dssp             SSSEEEEECS-TTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred             CCeEEEEECC-CCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence            3568999998 899999999999999999899999875

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=96.83  E-value=0.031  Score=46.02  Aligned_cols=91  Identities=16%  Similarity=0.114  Sum_probs=45.4

Q ss_pred             CCCeEEEeccCcccCccCCCC-------chHHHHHHhCCCEEEEEcCCCC-cHHHHHHHHHHHHhCCCcEEEEEEcccCC
Q psy14904        116 LTDVIILEGIGGFSVPFHDNE-------NSADLAEKLGLPIILVIDLKIG-CINNALLSLEAINSRGLKLIGWVANHTQI  187 (233)
Q Consensus       116 ~~D~vlID~~~g~~~p~~~~~-------~~~~l~~~~~~~vllV~~~~~~-~~~~~~~~~~~l~~~~~~i~GiVlN~~~~  187 (233)
                      ++.++++||||-.. +-....       ......... .-+++|.+.... +..+....++.+++.+.+++ +|+||++.
T Consensus        58 ~~~i~lvDTPG~~~-~~~~~~l~~~~~~~~~~~l~~a-D~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvi-lV~NK~Dl  134 (308)
T 3iev_A           58 EAQIIFLDTPGIYE-PKKSDVLGHSMVEIAKQSLEEA-DVILFMIDATEGWRPRDEEIYQNFIKPLNKPVI-VVINKIDK  134 (308)
T ss_dssp             TEEEEEEECCCCCC-CCTTCHHHHHHHHHHHHHHHHC-SEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEE-EEEECGGG
T ss_pred             CCeEEEEECcCCCc-cccchhHHHHHHHHHHHHhhcC-CEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEE-EEEECccC
Confidence            56788999976432 110000       111122223 346677776543 33333322566666677744 77999882


Q ss_pred             C-chhhhhhhHHHHHhhcC--CCce
Q psy14904        188 V-DTLFANENYIELTKYLN--VTPL  209 (233)
Q Consensus       188 ~-~~~~~~~~~~~l~~~~~--~pvl  209 (233)
                      . .........+.+++.++  .+++
T Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~i~  159 (308)
T 3iev_A          135 IGPAKNVLPLIDEIHKKHPELTEIV  159 (308)
T ss_dssp             SSSGGGGHHHHHHHHHHCTTCCCEE
T ss_pred             CCCHHHHHHHHHHHHHhccCCCeEE
Confidence            1 12223344555666554  4444

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.80  E-value=0.0023  Score=49.26  Aligned_cols=37  Identities=27%  Similarity=0.334  Sum_probs=32.5

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +..+|.|+|. .|+||||++..|+..+...|.+|.+.+
T Consensus        21 ~~~~i~i~G~-~GsGKstl~~~l~~~~~~~~~~v~~~~   57 (201)
T 1rz3_A           21 GRLVLGIDGL-SRSGKTTLANQLSQTLREQGISVCVFH   57 (201)
T ss_dssp             SSEEEEEEEC-TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCeEEEEECC-CCCCHHHHHHHHHHHHhhcCCeEEEec
Confidence            3568999998 999999999999999988888888774

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.77  E-value=0.00099  Score=49.69  Aligned_cols=26  Identities=19%  Similarity=0.255  Sum_probs=23.0

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      ||+.|.|+|. .|+||||++..|+..|
T Consensus         1 m~~~I~l~G~-~GsGKsT~a~~La~~l   26 (173)
T 1e6c_A            1 MTEPIFMVGA-RGCGMTTVGRELARAL   26 (173)
T ss_dssp             CCCCEEEESC-TTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECC-CCCCHHHHHHHHHHHh
Confidence            3578999998 9999999999998877

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=96.74  E-value=0.011  Score=50.75  Aligned_cols=36  Identities=14%  Similarity=0.079  Sum_probs=29.2

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHH------cCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKK------RGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~------~G~~Vl~~d   42 (233)
                      ..++.|+|. +|+||||++..|+.....      .+.++++++
T Consensus       178 Gei~~I~G~-sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid  219 (400)
T 3lda_A          178 GSITELFGE-FRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYID  219 (400)
T ss_dssp             TSEEEEEES-TTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred             CcEEEEEcC-CCCChHHHHHHHHHHhccCcccCCCCCcEEEEe
Confidence            357888888 999999999998866554      357899987

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.73  E-value=0.001  Score=49.90  Aligned_cols=26  Identities=19%  Similarity=0.238  Sum_probs=21.9

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      +|+.|+|+|. +|+||||++..||..+
T Consensus         3 ~m~~i~i~G~-~GsGKsTla~~La~~l   28 (175)
T 1via_A            3 LAKNIVFIGF-MGSGKSTLARALAKDL   28 (175)
T ss_dssp             --CCEEEECC-TTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEcC-CCCCHHHHHHHHHHHc
Confidence            3567999998 9999999999999876

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=96.69  E-value=0.0021  Score=53.24  Aligned_cols=35  Identities=11%  Similarity=0.055  Sum_probs=30.8

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..+.|++. +|+||||++.++|...+.+|.+|++|.
T Consensus        69 ~l~li~G~-pG~GKTtl~l~ia~~~a~~g~~vl~~s  103 (315)
T 3bh0_A           69 NFVLIAAR-PSMGKTAFALKQAKNMSDNDDVVNLHS  103 (315)
T ss_dssp             CEEEEECC-TTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             cEEEEEeC-CCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence            35666666 999999999999999999999999986

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.68  E-value=0.0014  Score=52.33  Aligned_cols=37  Identities=11%  Similarity=0.163  Sum_probs=30.0

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHc-----CCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKR-----GISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~-----G~~Vl~~d   42 (233)
                      ++.+|+|+|. .|+||||+|..|+..|...     |+++.+++
T Consensus        21 ~~~iI~I~G~-~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~   62 (252)
T 1uj2_A           21 EPFLIGVSGG-TASGKSSVCAKIVQLLGQNEVDYRQKQVVILS   62 (252)
T ss_dssp             CCEEEEEECS-TTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEE
T ss_pred             CcEEEEEECC-CCCCHHHHHHHHHHHhhhhcccccCCceEEEe
Confidence            4568999999 9999999999999887543     55677776

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.67  E-value=0.0013  Score=48.81  Aligned_cols=29  Identities=14%  Similarity=0.157  Sum_probs=23.4

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISC   38 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~V   38 (233)
                      |+.|+|+|. +|+||||++..|+..+   |+.+
T Consensus         1 M~~i~l~G~-~GsGKsT~~~~L~~~l---~~~~   29 (173)
T 3kb2_A            1 MTLIILEGP-DCCFKSTVAAKLSKEL---KYPI   29 (173)
T ss_dssp             -CEEEEECS-SSSSHHHHHHHHHHHH---CCCE
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHHHh---CCee
Confidence            457899998 9999999999988776   5544

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.67  E-value=0.0014  Score=50.45  Aligned_cols=27  Identities=15%  Similarity=0.165  Sum_probs=23.7

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      +++++|+|+|. .|+||||++..|+..+
T Consensus        16 ~~~~~I~l~G~-~GsGKSTla~~L~~~l   42 (202)
T 3t61_A           16 RFPGSIVVMGV-SGSGKSSVGEAIAEAC   42 (202)
T ss_dssp             CCSSCEEEECS-TTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECC-CCCCHHHHHHHHHHHh
Confidence            34678999999 9999999999999887

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=96.67  E-value=0.0024  Score=55.53  Aligned_cols=35  Identities=11%  Similarity=0.055  Sum_probs=31.5

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..+.|++. +|+||||++.++|...+.+|.+|++|.
T Consensus       198 ~liiIaG~-pG~GKTtlal~ia~~~a~~g~~vl~fS  232 (444)
T 3bgw_A          198 NFVLIAAR-PSMGKTAFALKQAKNMSDNDDVVNLHS  232 (444)
T ss_dssp             CEEEEEEC-SSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             cEEEEEeC-CCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence            45777777 999999999999999999999999986

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.66  E-value=0.0026  Score=49.28  Aligned_cols=37  Identities=19%  Similarity=0.348  Sum_probs=32.2

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHH-HcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFK-KRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~-~~G~~Vl~~d   42 (233)
                      +.+.|+|.|. .|+||||++..|+..|. ..|+++.+++
T Consensus        24 ~~~~i~~~G~-~GsGKsT~~~~l~~~l~~~~g~~~~~~~   61 (211)
T 1m7g_A           24 RGLTIWLTGL-SASGKSTLAVELEHQLVRDRRVHAYRLD   61 (211)
T ss_dssp             SCEEEEEECS-TTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred             CCCEEEEECC-CCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence            3467888888 99999999999999998 7898888876

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=96.65  E-value=0.0036  Score=56.96  Aligned_cols=86  Identities=19%  Similarity=0.206  Sum_probs=56.9

Q ss_pred             CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhh
Q psy14904        116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANE  195 (233)
Q Consensus       116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~  195 (233)
                      +|-+=||||||...  +   .....-+....+.+++|+++..|--.++....+.+.+.+++.+ +++||++ ........
T Consensus        66 ~~~iNlIDTPGH~D--F---~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i-~~INKmD-r~~a~~~~  138 (638)
T 3j25_A           66 NTKVNIIDTPGHMD--F---LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTI-FFINKID-QNGIDLST  138 (638)
T ss_dssp             SCBCCCEECCCSSS--T---HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCE-ECCEECC-SSSCCSHH
T ss_pred             CEEEEEEECCCcHH--H---HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeE-EEEeccc-cccCCHHH
Confidence            57788999998752  1   1112222233346888888877654566777888888899965 7799998 33334456


Q ss_pred             hHHHHHhhcCCCc
Q psy14904        196 NYIELTKYLNVTP  208 (233)
Q Consensus       196 ~~~~l~~~~~~pv  208 (233)
                      ..+.+++.++.++
T Consensus       139 ~~~~i~~~l~~~~  151 (638)
T 3j25_A          139 VYQDIKEKLSAEI  151 (638)
T ss_dssp             HHHHHHHTTCCCC
T ss_pred             HHHHHHHHhCCCc
Confidence            7788888776543

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.65  E-value=0.0018  Score=51.01  Aligned_cols=37  Identities=19%  Similarity=0.205  Sum_probs=32.2

Q ss_pred             CCCceeEEEEeCCCCCcHHHHHHHHHHHHHH-cCCeeeE
Q psy14904          3 NKNFLHYFITGTNTNIGKTIISCALLSEFKK-RGISCIG   40 (233)
Q Consensus         3 ~~~~~~i~i~~~kggvGKTt~a~~La~~l~~-~G~~Vl~   40 (233)
                      ..+.+.|.|.|. .|+||||++..|+..|.. +|++|.+
T Consensus        18 ~~~~~~i~~~G~-~g~GKst~~~~l~~~l~~~~g~~v~~   55 (223)
T 3ld9_A           18 GPGSMFITFEGI-DGSGKTTQSHLLAEYLSEIYGVNNVV   55 (223)
T ss_dssp             -CCCEEEEEECS-TTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred             CCCCeEEEEECC-CCCCHHHHHHHHHHHHhhccCceeeE
Confidence            344567888888 999999999999999999 9999987

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.65  E-value=0.0028  Score=52.28  Aligned_cols=37  Identities=22%  Similarity=0.189  Sum_probs=33.2

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +..++++.|. .|+||||+...||..+...+.+|.+..
T Consensus        99 ~g~vi~lvG~-nGsGKTTll~~Lag~l~~~~g~V~l~g  135 (302)
T 3b9q_A           99 KPAVIMIVGV-NGGGKTTSLGKLAHRLKNEGTKVLMAA  135 (302)
T ss_dssp             SCEEEEEECC-TTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CCcEEEEEcC-CCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence            3568999998 999999999999999999888998864

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.64  E-value=0.00072  Score=52.32  Aligned_cols=34  Identities=24%  Similarity=0.301  Sum_probs=30.8

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .|+|.|. .|+||||++..|+..|...|++|.+++
T Consensus         2 ~I~i~G~-~GsGKsTl~~~L~~~l~~~g~~v~~~~   35 (214)
T 1gtv_A            2 LIAIEGV-DGAGKRTLVEKLSGAFRAAGRSVATLA   35 (214)
T ss_dssp             EEEEEEE-EEEEHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEcC-CCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence            6888888 999999999999999998899988775

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.63  E-value=0.0029  Score=49.38  Aligned_cols=36  Identities=11%  Similarity=0.101  Sum_probs=32.8

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.+.|+|. +|+||||++..++..+...|+++.+++
T Consensus        52 ~~~~ll~G~-~G~GKT~la~~l~~~~~~~~~~~~~~~   87 (242)
T 3bos_A           52 VQAIYLWGP-VKSGRTHLIHAACARANELERRSFYIP   87 (242)
T ss_dssp             CSEEEEECS-TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCeEEEECC-CCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence            467888888 999999999999999999999999887

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=96.59  E-value=0.0032  Score=52.78  Aligned_cols=35  Identities=11%  Similarity=0.077  Sum_probs=31.5

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..+.|++. +|+||||++.++|..++..|.+|++|.
T Consensus        47 ~LiiIaG~-pG~GKTt~al~ia~~~a~~g~~Vl~fS   81 (338)
T 4a1f_A           47 SLVIIGAR-PSMGKTSLMMNMVLSALNDDRGVAVFS   81 (338)
T ss_dssp             CEEEEEEC-TTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             cEEEEEeC-CCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence            45677777 999999999999999999999999986

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=96.59  E-value=0.0035  Score=49.58  Aligned_cols=39  Identities=18%  Similarity=0.128  Sum_probs=34.8

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeee
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPI   44 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~   44 (233)
                      +.++.+++|. -|+||||-++.++.....+|++|++++|.
T Consensus        18 ~g~l~v~~G~-MgsGKTT~lL~~~~r~~~~g~kvli~kp~   56 (234)
T 2orv_A           18 RGQIQVILGP-MFSGKSTELMRRVRRFQIAQYKCLVIKYA   56 (234)
T ss_dssp             CCEEEEEECC-TTSCHHHHHHHHHHHHHTTTCCEEEEEET
T ss_pred             ceEEEEEECC-CCCcHHHHHHHHHHHHHHCCCeEEEEeec
Confidence            4567777777 89999999999999999999999999965

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.58  E-value=0.0029  Score=52.30  Aligned_cols=36  Identities=25%  Similarity=0.439  Sum_probs=32.7

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHH-HcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFK-KRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~-~~G~~Vl~~d   42 (233)
                      .+.+++.|. +|+|||+++..++..+. ++|++|.++.
T Consensus       152 ~~~lll~G~-~GtGKT~La~aia~~~~~~~g~~v~~~~  188 (308)
T 2qgz_A          152 QKGLYLYGD-MGIGKSYLLAAMAHELSEKKGVSTTLLH  188 (308)
T ss_dssp             CCEEEEECS-TTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred             CceEEEECC-CCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence            467889988 99999999999999999 9999998875

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.56  E-value=0.011  Score=59.92  Aligned_cols=36  Identities=19%  Similarity=0.279  Sum_probs=33.4

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.+.+.|+ +|+|||++|.+++....++|.+|.+++
T Consensus      1427 g~~vll~Gp-pGtGKT~LA~ala~ea~~~G~~v~Fi~ 1462 (2050)
T 3cmu_A         1427 GRIVEIYGP-ESSGKTTLTLQVIAAAQREGKTCAFID 1462 (2050)
T ss_dssp             TSEEEEECC-TTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence            467888888 999999999999999999999999998

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=96.56  E-value=0.038  Score=50.76  Aligned_cols=85  Identities=15%  Similarity=0.066  Sum_probs=50.0

Q ss_pred             CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhh
Q psy14904        116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANE  195 (233)
Q Consensus       116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~  195 (233)
                      ++.+.|+||||...  +.  .......... .-+++|.++..+...+.....+.+...+.+++ +|+||++ ........
T Consensus        74 ~~~i~liDTPG~~d--f~--~~~~~~l~~a-D~~llVvDa~~g~~~~~~~~~~~~~~~~~p~i-lviNK~D-l~~~~~~~  146 (693)
T 2xex_A           74 GHRVNIIDTPGHVD--FT--VEVERSLRVL-DGAVTVLDAQSGVEPQTETVWRQATTYGVPRI-VFVNKMD-KLGANFEY  146 (693)
T ss_dssp             TEEEEEECCCCCSS--CC--HHHHHHHHHC-SEEEEEEETTTBSCHHHHHHHHHHHHTTCCEE-EEEECTT-STTCCHHH
T ss_pred             CeeEEEEECcCCcc--hH--HHHHHHHHHC-CEEEEEECCCCCCcHHHHHHHHHHHHcCCCEE-EEEECCC-ccccchHH
Confidence            57899999987632  11  1112222333 35788888765432334444555666788855 7899998 32222345


Q ss_pred             hHHHHHhhcCCC
Q psy14904        196 NYIELTKYLNVT  207 (233)
Q Consensus       196 ~~~~l~~~~~~p  207 (233)
                      ..+.+++.++.+
T Consensus       147 ~~~~l~~~l~~~  158 (693)
T 2xex_A          147 SVSTLHDRLQAN  158 (693)
T ss_dssp             HHHHHHHHHCCC
T ss_pred             HHHHHHHHhCCC
Confidence            667777766654

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.55  E-value=0.003  Score=49.16  Aligned_cols=36  Identities=28%  Similarity=0.383  Sum_probs=31.8

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..++.|+|. +|+||||++..++..++..|.+|+++.
T Consensus        23 G~~~~i~G~-~GsGKTtl~~~l~~~~~~~~~~v~~~~   58 (235)
T 2w0m_A           23 GFFIALTGE-PGTGKTIFSLHFIAKGLRDGDPCIYVT   58 (235)
T ss_dssp             TCEEEEECS-TTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             CCEEEEEcC-CCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence            357888888 999999999999999988888999986

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.54  E-value=0.0019  Score=49.43  Aligned_cols=34  Identities=12%  Similarity=0.068  Sum_probs=27.9

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.|+|+|. .|+||||++..|+..|  .|+++..++
T Consensus         4 ~~~I~l~G~-~GsGKsT~~~~L~~~l--~g~~~~~~~   37 (204)
T 2v54_A            4 GALIVFEGL-DKSGKTTQCMNIMESI--PANTIKYLN   37 (204)
T ss_dssp             CCEEEEECC-TTSSHHHHHHHHHHTS--CGGGEEEEE
T ss_pred             CcEEEEEcC-CCCCHHHHHHHHHHHH--CCCceEEEe
Confidence            457999999 9999999999998877  467776654

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.53  E-value=0.0023  Score=47.05  Aligned_cols=36  Identities=14%  Similarity=0.160  Sum_probs=31.8

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.+++.|. .|+||||++..++..+...|+++.+++
T Consensus        36 g~~~~l~G~-~G~GKTtL~~~i~~~~~~~g~~~~~~~   71 (149)
T 2kjq_A           36 GQFIYVWGE-EGAGKSHLLQAWVAQALEAGKNAAYID   71 (149)
T ss_dssp             CSEEEEESS-STTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CCEEEEECC-CCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence            357888888 999999999999999988898888876

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.52  E-value=0.002  Score=47.97  Aligned_cols=30  Identities=17%  Similarity=0.272  Sum_probs=24.3

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISC   38 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~V   38 (233)
                      -|++|.|+|. .|+||||++..|+..|   |+++
T Consensus         6 ~~~~i~l~G~-~GsGKSTva~~La~~l---g~~~   35 (168)
T 1zuh_A            6 HMQHLVLIGF-MGSGKSSLAQELGLAL---KLEV   35 (168)
T ss_dssp             --CEEEEESC-TTSSHHHHHHHHHHHH---TCCE
T ss_pred             ccceEEEECC-CCCCHHHHHHHHHHHh---CCCE
Confidence            4789999999 9999999999998877   5544

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.52  E-value=0.0022  Score=50.02  Aligned_cols=29  Identities=21%  Similarity=0.209  Sum_probs=22.8

Q ss_pred             CCCCCceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          1 MINKNFLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      ||.+ ..+|+|+|. .|+||||++..|+..+
T Consensus         1 mm~~-~~~i~i~G~-~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            1 MTAI-APVITIDGP-SGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             --CC-SCEEEEECC-TTSSHHHHHHHHHHHH
T ss_pred             CCCC-CeEEEEECC-CCCCHHHHHHHHHHHh
Confidence            5554 347999999 9999999999888766

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.50  E-value=0.0016  Score=49.98  Aligned_cols=32  Identities=16%  Similarity=0.269  Sum_probs=25.8

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      |++|+|+|. .|+||||++..|+. +   |..+...|
T Consensus         1 m~~i~i~G~-~GsGKSTl~~~L~~-~---g~~~i~~d   32 (204)
T 2if2_A            1 MKRIGLTGN-IGCGKSTVAQMFRE-L---GAYVLDAD   32 (204)
T ss_dssp             CCEEEEEEC-TTSSHHHHHHHHHH-T---TCEEEEHH
T ss_pred             CeEEEEECC-CCcCHHHHHHHHHH-C---CCEEEEcc
Confidence            357999999 99999999988887 4   76665544

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.49  E-value=0.0039  Score=52.66  Aligned_cols=37  Identities=22%  Similarity=0.189  Sum_probs=33.2

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +..++++.|. .|+||||+...||..+...+.+|.+..
T Consensus       156 ~g~vi~lvG~-nGsGKTTll~~Lag~l~~~~G~V~l~g  192 (359)
T 2og2_A          156 KPAVIMIVGV-NGGGKTTSLGKLAHRLKNEGTKVLMAA  192 (359)
T ss_dssp             SSEEEEEECC-TTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CCeEEEEEcC-CCChHHHHHHHHHhhccccCCEEEEec
Confidence            3568999998 999999999999999998888998864

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.47  E-value=0.0034  Score=48.67  Aligned_cols=36  Identities=17%  Similarity=0.183  Sum_probs=30.8

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +++.|+|+|. +|+||||+..+|+..+... +++.+++
T Consensus        29 ~~~~i~i~G~-~g~GKTTl~~~l~~~~~~~-~~~~~i~   64 (221)
T 2wsm_A           29 GTVAVNIMGA-IGSGKTLLIERTIERIGNE-VKIGAML   64 (221)
T ss_dssp             TCEEEEEEEC-TTSCHHHHHHHHHHHHTTT-SCEEEEE
T ss_pred             CceEEEEEcC-CCCCHHHHHHHHHHHhccC-CeEEEEe
Confidence            4678899987 9999999999999998655 7888886

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.39  E-value=0.0023  Score=48.32  Aligned_cols=25  Identities=20%  Similarity=0.240  Sum_probs=21.9

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      .++|.|+|. +|+||||++..|+..|
T Consensus         2 ~~~I~l~G~-~GsGKsT~a~~La~~l   26 (184)
T 2iyv_A            2 APKAVLVGL-PGSGKSTIGRRLAKAL   26 (184)
T ss_dssp             CCSEEEECS-TTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECC-CCCCHHHHHHHHHHHc
Confidence            346899998 9999999999998877

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*

Probab=96.37  E-value=0.0071  Score=46.52  Aligned_cols=40  Identities=18%  Similarity=0.126  Sum_probs=35.0

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeee
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPI   44 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~   44 (233)
                      .+.+.++++|+ .|+||||-.+..+..+..+|++|++++|.
T Consensus        18 ~~g~l~fiyG~-MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~   57 (195)
T 1w4r_A           18 TRGQIQVILGP-MFSGKSTELMRRVRRFQIAQYKCLVIKYA   57 (195)
T ss_dssp             -CCEEEEEEEC-TTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred             CceEEEEEECC-CCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence            35678889998 99999999999999999999999999964

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.35  E-value=0.003  Score=48.48  Aligned_cols=26  Identities=27%  Similarity=0.479  Sum_probs=23.6

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      +++.|+++|. +|+||||++..|+..+
T Consensus        24 ~~~~i~l~G~-~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           24 AMVRIFLTGY-MGAGKTTLGKAFARKL   49 (199)
T ss_dssp             CCCEEEEECC-TTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEcC-CCCCHHHHHHHHHHHc
Confidence            4678999999 9999999999999888

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.34  E-value=0.0058  Score=49.85  Aligned_cols=36  Identities=11%  Similarity=0.011  Sum_probs=31.7

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHc-CCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKR-GISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~-G~~Vl~~d   42 (233)
                      -.++.|+|. +|+||||++..|+..++.. |.+|+++.
T Consensus        35 G~~~~i~G~-~G~GKTTl~~~ia~~~~~~~G~~v~~~~   71 (296)
T 1cr0_A           35 GEVIMVTSG-SGMGKSTFVRQQALQWGTAMGKKVGLAM   71 (296)
T ss_dssp             TCEEEEEES-TTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred             CeEEEEEeC-CCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence            357888888 9999999999999999876 88999886

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.31  E-value=0.0058  Score=47.71  Aligned_cols=36  Identities=22%  Similarity=0.253  Sum_probs=31.8

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.|.|.|. .|+||||.+..|+..|..+|++|....
T Consensus         6 g~~i~~eG~-~gsGKsT~~~~l~~~l~~~~~~v~~~~   41 (213)
T 4edh_A            6 GLFVTLEGP-EGAGKSTNRDYLAERLRERGIEVQLTR   41 (213)
T ss_dssp             CEEEEEECS-TTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             ceEEEEEcC-CCCCHHHHHHHHHHHHHHcCCCccccc
Confidence            357888888 999999999999999999999997765

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.30  E-value=0.005  Score=46.58  Aligned_cols=25  Identities=32%  Similarity=0.357  Sum_probs=22.2

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      .+.|+|+|. +|+||||++..|+..|
T Consensus         5 ~~~I~l~G~-~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            5 PALIIVTGH-PATGKTTLSQALATGL   29 (193)
T ss_dssp             CEEEEEEES-TTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHHHc
Confidence            457889998 9999999999999877

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.28  E-value=0.0027  Score=47.53  Aligned_cols=24  Identities=25%  Similarity=0.279  Sum_probs=21.2

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      +.|.++|. +|+||||++..|+..|
T Consensus         4 ~~i~l~G~-~GsGKST~a~~La~~l   27 (178)
T 1qhx_A            4 RMIILNGG-SSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CEEEEECC-TTSSHHHHHHHHHHHS
T ss_pred             eEEEEECC-CCCCHHHHHHHHHHhc
Confidence            57888888 9999999999998876

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=96.27  E-value=0.044  Score=46.86  Aligned_cols=66  Identities=15%  Similarity=0.082  Sum_probs=40.1

Q ss_pred             CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904        116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ  186 (233)
Q Consensus       116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~  186 (233)
                      .+.+.|+||||.-.  +.  ......+... .-+++|.++..+...+....+..++..+++.+-+++||++
T Consensus        74 ~~~~~iiDtpG~~~--f~--~~~~~~~~~a-D~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~D  139 (405)
T 2c78_A           74 KRHYSHVDCPGHAD--YI--KNMITGAAQM-DGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVD  139 (405)
T ss_dssp             SCEEEEEECCCSGG--GH--HHHHHHHTTC-SSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGG
T ss_pred             CeEEEEEECCChHH--HH--HHHHHHHHHC-CEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECcc
Confidence            57899999986531  10  0111112222 3577888876655455556666666777774457899998

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.25  E-value=0.0033  Score=48.16  Aligned_cols=27  Identities=19%  Similarity=0.336  Sum_probs=23.3

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      ++++.|+|+|. .|+||||++..|+..+
T Consensus        13 ~~~~~I~l~G~-~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           13 DQVSVIFVLGG-PGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             TTCEEEEEECS-TTSSHHHHHHHHHHHS
T ss_pred             CCCcEEEEECC-CCCCHHHHHHHHHHHc
Confidence            45778999998 9999999999998765

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.23  E-value=0.0053  Score=47.10  Aligned_cols=26  Identities=27%  Similarity=0.353  Sum_probs=22.9

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      +.++|+|+|. .|+||||++..|+..+
T Consensus        28 ~g~~i~l~G~-~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           28 PTRHVVVMGV-SGSGKTTIAHGVADET   53 (200)
T ss_dssp             CCCEEEEECC-TTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEECC-CCCCHHHHHHHHHHhh
Confidence            3468999998 9999999999999887

>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}

Probab=96.22  E-value=0.032  Score=49.11  Aligned_cols=120  Identities=17%  Similarity=0.219  Sum_probs=69.2

Q ss_pred             CceeEEEEeCC-CCCcHHHHHHHHHHHHHHcCCeeeEEe--eee-cCcc-----------cCCCCCCccchHHHHHHHHh
Q psy14904          5 NFLHYFITGTN-TNIGKTIISCALLSEFKKRGISCIGMK--PIA-SGAY-----------LNNKNKIWFNEDVNLLNKYS   69 (233)
Q Consensus         5 ~~~~i~i~~~k-ggvGKTt~a~~La~~l~~~G~~Vl~~d--p~~-~~~~-----------~~~~~~~l~~~d~~~~~~~~   69 (233)
                      ++|-|+|||.= +|.||-.+|+.|+..|+.+|++|..+|  |-. -++.           ..+ ..+-.+-|...+.++.
T Consensus         2 ~~k~i~vtggv~s~lgkgi~~as~g~ll~~~g~~v~~~k~dpylnvd~gtmsp~~hgevfv~~-dg~e~dldlg~yerf~   80 (535)
T 3nva_A            2 PNKYIVVTGGVLSSVGKGTLVASIGMLLKRRGYNVTAVKIDPYINVDAGTMNPYMHGEVFVTE-DGAETDLDLGHYERFM   80 (535)
T ss_dssp             CCEEEEEECCCSTTTTHHHHHHHHHHHHHHTTCCEEEEEEECSSSSSSTTCCHHHHCCCEECT-TCCEECTHHHHHHHHH
T ss_pred             CceEEEEeCccccCcchHHHHHHHHHHHHHCCceEEEEecCcceeecCCCCCccccceEEEec-CCccccccccchhhhc
Confidence            47899999944 899999999999999999999999976  421 1110           001 0122223555556666


Q ss_pred             CCCcccccceee-eeecCCCChhhhhhhcCCCC----C-----HHHHHHHHHHhh--cCCCeEEEeccCccc
Q psy14904         70 NSLYEFTKLINP-YLFKYPISPYTSSNLENRII----N-----TSHIINCYNYLS--NLTDVIILEGIGGFS  129 (233)
Q Consensus        70 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~-----~~~l~~~~~~l~--~~~D~vlID~~~g~~  129 (233)
                      +.......|+.. -.|.    .-+..++.|..+    .     -+.+++.+.+++  .++|++|||-.|-+.
T Consensus        81 ~~~l~~~~n~ttg~iy~----~vi~ker~g~ylg~tvqviphit~eik~~i~~~~~~~~~dv~i~eiggtvg  148 (535)
T 3nva_A           81 DVNMTKYNNITAGKVYF----EVIKKEREGKYLGQTVQIIPHVTDQIKDMIRYASKINNAEITLVEIGGTVG  148 (535)
T ss_dssp             CCCCCGGGEEEHHHHHH----HHHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHHHTCSEEEEEECSCTT
T ss_pred             CCCcccccCcchhHHHH----HHHHHHhcCCcCCCeeEECCCchHHHHHHHHHhhccCCCCEEEEEeCCccc
Confidence            544322122211 0010    001123333321    1     245677777766  689999999865543

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.22  E-value=0.0042  Score=47.11  Aligned_cols=25  Identities=16%  Similarity=0.271  Sum_probs=22.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      ++.|+|+|. .|+||||++..|+..+
T Consensus         9 ~~~I~l~G~-~GsGKsT~~~~La~~l   33 (196)
T 2c95_A            9 TNIIFVVGG-PGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             SCEEEEEEC-TTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECC-CCCCHHHHHHHHHHHh
Confidence            468999999 9999999999999877

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.20  E-value=0.0046  Score=47.18  Aligned_cols=29  Identities=28%  Similarity=0.276  Sum_probs=23.6

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISC   38 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~V   38 (233)
                      ++.+|+|+|. .|+||||++..|+..    |..+
T Consensus         7 ~~~~I~i~G~-~GsGKST~~~~La~~----g~~~   35 (203)
T 1uf9_A            7 HPIIIGITGN-IGSGKSTVAALLRSW----GYPV   35 (203)
T ss_dssp             CCEEEEEEEC-TTSCHHHHHHHHHHT----TCCE
T ss_pred             CceEEEEECC-CCCCHHHHHHHHHHC----CCEE
Confidence            4568999999 999999999888764    6544

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=96.19  E-value=0.0031  Score=46.98  Aligned_cols=25  Identities=24%  Similarity=0.400  Sum_probs=22.0

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      .++|+|+|. .|+||||++..|+..+
T Consensus         4 ~~~i~l~G~-~GsGKSTl~~~La~~l   28 (173)
T 1kag_A            4 KRNIFLVGP-MGAGKSTIGRQLAQQL   28 (173)
T ss_dssp             CCCEEEECC-TTSCHHHHHHHHHHHT
T ss_pred             CCeEEEECC-CCCCHHHHHHHHHHHh
Confidence            467999999 9999999999888776

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.17  E-value=0.0076  Score=46.53  Aligned_cols=37  Identities=16%  Similarity=0.246  Sum_probs=31.3

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +..+++|+|. .|+||||++..|+..+...|.++..+.
T Consensus        21 ~g~~v~I~G~-sGsGKSTl~~~l~~~~~~~g~~~g~v~   57 (208)
T 3c8u_A           21 GRQLVALSGA-PGSGKSTLSNPLAAALSAQGLPAEVVP   57 (208)
T ss_dssp             SCEEEEEECC-TTSCTHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCeEEEEECC-CCCCHHHHHHHHHHHHhhcCCceEEEe
Confidence            4568999999 999999999999999987776677664

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.15  E-value=0.0043  Score=47.69  Aligned_cols=28  Identities=25%  Similarity=0.234  Sum_probs=23.2

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISC   38 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~V   38 (233)
                      |.+|+|+|. .|+||||++..|+.    .|+.+
T Consensus         2 ~~~i~l~G~-~GsGKST~~~~La~----lg~~~   29 (206)
T 1jjv_A            2 TYIVGLTGG-IGSGKTTIANLFTD----LGVPL   29 (206)
T ss_dssp             CEEEEEECS-TTSCHHHHHHHHHT----TTCCE
T ss_pred             CcEEEEECC-CCCCHHHHHHHHHH----CCCcc
Confidence            468999999 99999999988876    47554

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.15  E-value=0.0048  Score=46.71  Aligned_cols=26  Identities=31%  Similarity=0.418  Sum_probs=22.2

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHH
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSE   30 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~   30 (233)
                      .+.+.|.++|. .|+||||++..|+..
T Consensus         8 ~~~~~I~l~G~-~GsGKSTv~~~La~~   33 (184)
T 1y63_A            8 PKGINILITGT-PGTGKTSMAEMIAAE   33 (184)
T ss_dssp             CSSCEEEEECS-TTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECC-CCCCHHHHHHHHHHh
Confidence            34568999999 999999999888876

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=96.14  E-value=0.0079  Score=52.22  Aligned_cols=35  Identities=14%  Similarity=0.143  Sum_probs=30.8

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHH-cCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKK-RGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~-~G~~Vl~~d   42 (233)
                      ..+.|++. +|+|||+++.++|...+. .|.+|++|.
T Consensus       201 ~l~ii~G~-pg~GKT~lal~ia~~~a~~~g~~vl~~s  236 (444)
T 2q6t_A          201 SLNIIAAR-PAMGKTAFALTIAQNAALKEGVGVGIYS  236 (444)
T ss_dssp             CEEEEEEC-TTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             cEEEEEeC-CCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence            46777777 999999999999999997 489999987

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.12  E-value=0.0044  Score=49.61  Aligned_cols=33  Identities=27%  Similarity=0.378  Sum_probs=25.9

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      |+.|+|+|. +|+||||++..||..+   |..+.-.|
T Consensus         1 M~li~I~G~-~GSGKSTla~~La~~~---~~~~i~~D   33 (253)
T 2ze6_A            1 MLLHLIYGP-TCSGKTDMAIQIAQET---GWPVVALD   33 (253)
T ss_dssp             CEEEEEECC-TTSSHHHHHHHHHHHH---CCCEEECC
T ss_pred             CeEEEEECC-CCcCHHHHHHHHHhcC---CCeEEecc
Confidence            468899999 9999999999998876   55554333

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.12  E-value=0.01  Score=44.24  Aligned_cols=27  Identities=22%  Similarity=0.240  Sum_probs=23.7

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKK   33 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~   33 (233)
                      .+.+.|+|. +|+|||+++..++..+..
T Consensus        43 ~~~~ll~G~-~G~GKT~l~~~~~~~~~~   69 (195)
T 1jbk_A           43 KNNPVLIGE-PGVGKTAIVEGLAQRIIN   69 (195)
T ss_dssp             SCEEEEECC-TTSCHHHHHHHHHHHHHH
T ss_pred             CCceEEECC-CCCCHHHHHHHHHHHHHh
Confidence            356788888 999999999999999977

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=96.11  E-value=0.0074  Score=47.47  Aligned_cols=35  Identities=20%  Similarity=0.267  Sum_probs=28.0

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHH-HHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEF-KKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l-~~~G~~Vl~~d   42 (233)
                      ..+.|++. +|+|||++|.++|... .+.|.+|+++.
T Consensus        31 ~l~~i~G~-pG~GKT~l~l~~~~~~~~~~~~~v~~~s   66 (251)
T 2zts_A           31 TTVLLTGG-TGTGKTTFAAQFIYKGAEEYGEPGVFVT   66 (251)
T ss_dssp             CEEEEECC-TTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             eEEEEEeC-CCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence            35666666 9999999999998764 55688999986

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=96.11  E-value=0.0078  Score=52.40  Aligned_cols=35  Identities=9%  Similarity=0.113  Sum_probs=30.5

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHH-cCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKK-RGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~-~G~~Vl~~d   42 (233)
                      ..+.|+|. +|+||||++.+++..++. .|.+|+++.
T Consensus       204 ~liiI~G~-pG~GKTtl~l~ia~~~~~~~g~~Vl~~s  239 (454)
T 2r6a_A          204 DLIIVAAR-PSVGKTAFALNIAQNVATKTNENVAIFS  239 (454)
T ss_dssp             CEEEEECC-TTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred             CEEEEECC-CCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            46677777 999999999999999987 588999986

>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0

Probab=96.11  E-value=0.0045  Score=53.60  Aligned_cols=37  Identities=24%  Similarity=0.178  Sum_probs=30.6

Q ss_pred             CceeEEE---EeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904          5 NFLHYFI---TGTNTNIGKTIISCALLSEFKKRGISCIGM   41 (233)
Q Consensus         5 ~~~~i~i---~~~kggvGKTt~a~~La~~l~~~G~~Vl~~   41 (233)
                      +.|.|.|   +.+.-|.||||++.+|+.+|.+.|+++.+.
T Consensus        42 ~GklIlVTaItPTPaGEGKtTttiGL~~aL~~lgk~~~~~   81 (543)
T 3do6_A           42 DGKLILVTAVTPTPAGEGKTTTSIGLSMSLNRIGKKSIVT   81 (543)
T ss_dssp             CCEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCeEEEEEecCCCCCCCCccchHHHHHHHHHhcCCeeEEE
Confidence            3455555   457889999999999999999999998764

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.10  E-value=0.0053  Score=46.10  Aligned_cols=25  Identities=32%  Similarity=0.477  Sum_probs=22.0

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      .+.|.|+|. +|+||||++..|+..+
T Consensus        11 ~~~i~i~G~-~GsGKst~~~~l~~~~   35 (180)
T 3iij_A           11 LPNILLTGT-PGVGKTTLGKELASKS   35 (180)
T ss_dssp             CCCEEEECS-TTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEeC-CCCCHHHHHHHHHHHh
Confidence            457889998 9999999999998877

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=96.10  E-value=0.079  Score=47.76  Aligned_cols=85  Identities=12%  Similarity=0.078  Sum_probs=47.9

Q ss_pred             CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhh
Q psy14904        116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANE  195 (233)
Q Consensus       116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~  195 (233)
                      .|.+.|+||||...-  .  .......... .-+++|.++..+.-.+.......+...+++ .-+|+||++.+ ....+.
T Consensus        72 ~~~inliDTPGh~dF--~--~ev~r~l~~a-D~aILVVDa~~gv~~qt~~~~~~a~~~~ip-iIvviNKiDl~-~a~~~~  144 (600)
T 2ywe_A           72 TYKLHLIDTPGHVDF--S--YEVSRALAAC-EGALLLIDASQGIEAQTVANFWKAVEQDLV-IIPVINKIDLP-SADVDR  144 (600)
T ss_dssp             EEEEEEECCCCSGGG--H--HHHHHHHHTC-SEEEEEEETTTBCCHHHHHHHHHHHHTTCE-EEEEEECTTST-TCCHHH
T ss_pred             eEEEEEEECCCcHhH--H--HHHHHHHHhC-CEEEEEEECCCCccHHHHHHHHHHHHCCCC-EEEEEeccCcc-ccCHHH
Confidence            477889999976421  1  0111222333 357778877655333344444455567888 44789999822 222334


Q ss_pred             hHHHHHhhcCCC
Q psy14904        196 NYIELTKYLNVT  207 (233)
Q Consensus       196 ~~~~l~~~~~~p  207 (233)
                      ..+.+++.++.+
T Consensus       145 v~~el~~~lg~~  156 (600)
T 2ywe_A          145 VKKQIEEVLGLD  156 (600)
T ss_dssp             HHHHHHHTSCCC
T ss_pred             HHHHHHHhhCCC
Confidence            556677666653

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=96.06  E-value=0.013  Score=45.88  Aligned_cols=38  Identities=21%  Similarity=0.003  Sum_probs=33.8

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPI   44 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~   44 (233)
                      ..+.+|+|. -|+||||..+.++..+..+|++|++++|.
T Consensus        28 G~I~vitG~-M~sGKTT~Llr~~~r~~~~g~kvli~kp~   65 (219)
T 3e2i_A           28 GWIECITGS-MFSGKSEELIRRLRRGIYAKQKVVVFKPA   65 (219)
T ss_dssp             CEEEEEEEC-TTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             ceEEEEECC-CCCCHHHHHHHHHHHHHHcCCceEEEEec
Confidence            467788888 89999999999999999999999999964

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.01  E-value=0.0043  Score=47.21  Aligned_cols=25  Identities=24%  Similarity=0.321  Sum_probs=22.3

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      .+.|+|+|. +|+||||++..|+..+
T Consensus        12 ~~~I~l~G~-~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A           12 CKIIFIIGG-PGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             SCEEEEEEC-TTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECC-CCCCHHHHHHHHHHHh
Confidence            457999999 9999999999999877

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.01  E-value=0.01  Score=44.27  Aligned_cols=26  Identities=15%  Similarity=0.433  Sum_probs=22.8

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      ++++|.|+|. .|+||||++..|+..+
T Consensus         7 ~g~~i~l~G~-~GsGKSTl~~~l~~~~   32 (175)
T 1knq_A            7 DHHIYVLMGV-SGSGKSAVASEVAHQL   32 (175)
T ss_dssp             TSEEEEEECS-TTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEcC-CCCCHHHHHHHHHHhh
Confidence            4578999999 9999999999998876

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=96.01  E-value=0.0095  Score=45.85  Aligned_cols=33  Identities=24%  Similarity=0.233  Sum_probs=29.4

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      |+|=|. -|+||||.+..|+..|.++|++|.+..
T Consensus         3 I~~EG~-DGsGKsTq~~~L~~~L~~~g~~v~~tr   35 (197)
T 3hjn_A            3 ITFEGI-DGSGKSTQIQLLAQYLEKRGKKVILKR   35 (197)
T ss_dssp             EEEECS-TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEECC-CCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence            566677 899999999999999999999998876

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=96.00  E-value=0.006  Score=47.00  Aligned_cols=38  Identities=24%  Similarity=0.179  Sum_probs=28.3

Q ss_pred             CCCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          1 MINKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      |-.++..+|+|+|. .|+||||++..|+..+..   ++.+++
T Consensus         1 ~~~~~~~~i~i~G~-~GsGKSTl~~~l~~~~~~---~i~~v~   38 (211)
T 3asz_A            1 MSAPKPFVIGIAGG-TASGKTTLAQALARTLGE---RVALLP   38 (211)
T ss_dssp             ----CCEEEEEEES-TTSSHHHHHHHHHHHHGG---GEEEEE
T ss_pred             CCCCCcEEEEEECC-CCCCHHHHHHHHHHHhCC---CeEEEe
Confidence            44455678999999 899999999999888742   567765

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.00  E-value=0.0075  Score=46.89  Aligned_cols=31  Identities=16%  Similarity=0.307  Sum_probs=25.3

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeee
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCI   39 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl   39 (233)
                      ++..|+|.|. +|+||||++..|+..|   |..+.
T Consensus         4 ~~~~I~l~G~-~GsGKsT~a~~La~~l---~~~~i   34 (217)
T 3be4_A            4 KKHNLILIGA-PGSGKGTQCEFIKKEY---GLAHL   34 (217)
T ss_dssp             GCCEEEEEEC-TTSSHHHHHHHHHHHH---CCEEE
T ss_pred             CceEEEEECC-CCCCHHHHHHHHHHHh---CceEE
Confidence            4557889998 9999999999999887   55543

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=95.98  E-value=0.012  Score=46.77  Aligned_cols=35  Identities=17%  Similarity=0.299  Sum_probs=30.7

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCe-eeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGIS-CIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~-Vl~~d   42 (233)
                      +.|.|.|. .|+||||.+..|+..|..+|++ |.+..
T Consensus        28 ~~i~~eG~-~GsGKsT~~~~l~~~l~~~~~~~~~~~r   63 (236)
T 3lv8_A           28 KFIVIEGL-EGAGKSTAIQVVVETLQQNGIDHITRTR   63 (236)
T ss_dssp             CEEEEEES-TTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             eEEEEECC-CCCCHHHHHHHHHHHHHhcCCCeeeeec
Confidence            57888888 9999999999999999999999 65554

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=95.98  E-value=0.007  Score=44.67  Aligned_cols=28  Identities=36%  Similarity=0.440  Sum_probs=22.7

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIG   40 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~   40 (233)
                      +|+|+|. +|+||||++..|    .+.|+.+.-
T Consensus         3 ~I~l~G~-~GsGKsT~a~~L----~~~g~~~i~   30 (179)
T 3lw7_A            3 VILITGM-PGSGKSEFAKLL----KERGAKVIV   30 (179)
T ss_dssp             EEEEECC-TTSCHHHHHHHH----HHTTCEEEE
T ss_pred             EEEEECC-CCCCHHHHHHHH----HHCCCcEEE
Confidence            6888888 999999999888    556877543

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=95.98  E-value=0.0085  Score=53.48  Aligned_cols=36  Identities=22%  Similarity=0.287  Sum_probs=32.2

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ...|.++|. +|+||||++..|+..|..+|+++.++|
T Consensus       372 ~~~I~l~G~-~GsGKSTia~~La~~L~~~G~~~~~ld  407 (546)
T 2gks_A          372 GFCVWLTGL-PCAGKSTIAEILATMLQARGRKVTLLD  407 (546)
T ss_dssp             CEEEEEECS-TTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             ceEEEccCC-CCCCHHHHHHHHHHHhhhcCCeEEEEC
Confidence            457888887 999999999999999999999988876

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=95.95  E-value=0.043  Score=55.77  Aligned_cols=36  Identities=19%  Similarity=0.279  Sum_probs=32.0

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ...+.|++. +|+||||++.++|...+++|.+|++++
T Consensus       383 G~lilI~G~-pGsGKTtLaLqia~~~a~~G~~vlyis  418 (2050)
T 3cmu_A          383 GRIVEIYGP-ESSGKTTLTLQVIAAAQREGKTCAFID  418 (2050)
T ss_dssp             TSEEEEECC-TTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred             CcEEEEEeC-CCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence            346677777 999999999999999999999999998

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=95.94  E-value=0.0098  Score=46.11  Aligned_cols=36  Identities=14%  Similarity=0.146  Sum_probs=30.2

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      |.+-|+|=|. -|+||||.+..|+..|. +|++|....
T Consensus         1 M~kFI~~EG~-dGsGKsTq~~~L~~~L~-~~~~v~~~~   36 (205)
T 4hlc_A            1 MSAFITFEGP-EGSGKTTVINEVYHRLV-KDYDVIMTR   36 (205)
T ss_dssp             -CEEEEEECC-TTSCHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred             CCCEEEEECC-CCCcHHHHHHHHHHHHH-CCCCEEEee
Confidence            4567888888 89999999999999996 688888765

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.94  E-value=0.0094  Score=49.22  Aligned_cols=36  Identities=36%  Similarity=0.373  Sum_probs=32.6

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.++|+|. +|+||||++..++..+.+.|.++.+++
T Consensus        37 ~~~lll~G~-~GtGKT~la~~i~~~~~~~~~~~~~i~   72 (324)
T 1l8q_A           37 YNPIFIYGS-VGTGKTHLLQAAGNEAKKRGYRVIYSS   72 (324)
T ss_dssp             CSSEEEECS-SSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCeEEEECC-CCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence            457899998 999999999999999998899998886

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=95.93  E-value=0.0088  Score=53.72  Aligned_cols=36  Identities=19%  Similarity=0.177  Sum_probs=31.8

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEee
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKP   43 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp   43 (233)
                      +.+.|+|. +|+||||+...++..+.+.|++|+++-|
T Consensus       205 ~~~~I~G~-pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap  240 (574)
T 3e1s_A          205 RLVVLTGG-PGTGKSTTTKAVADLAESLGLEVGLCAP  240 (574)
T ss_dssp             SEEEEECC-TTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CEEEEEcC-CCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence            46777777 9999999999999999999999998754

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=95.92  E-value=0.0075  Score=47.59  Aligned_cols=35  Identities=17%  Similarity=0.188  Sum_probs=27.9

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHc----CCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKR----GISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~----G~~Vl~~d   42 (233)
                      +.|.|.|. .|+||||.+..|+..|...    |++|.+..
T Consensus        26 ~~I~~eG~-~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r   64 (227)
T 3v9p_A           26 KFITFEGI-DGAGKTTHLQWFCDRLQERLGPAGRHVVVTR   64 (227)
T ss_dssp             CEEEEECC-C---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred             eEEEEECC-CCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence            46888888 9999999999999999988    99997665

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=95.91  E-value=0.01  Score=53.27  Aligned_cols=37  Identities=30%  Similarity=0.336  Sum_probs=32.4

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcC-CeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRG-ISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G-~~Vl~~d   42 (233)
                      +..+|.|+|. +|+||||++..|+..|..+| +++.++|
T Consensus       395 ~~~~I~l~Gl-sGSGKSTiA~~La~~L~~~G~~~~~~lD  432 (573)
T 1m8p_A          395 QGFTIFLTGY-MNSGKDAIARALQVTLNQQGGRSVSLLL  432 (573)
T ss_dssp             CCEEEEEECS-TTSSHHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred             cceEEEeecC-CCCCHHHHHHHHHHHhcccCCceEEEEC
Confidence            3457899998 99999999999999999888 8887776

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=95.90  E-value=0.0063  Score=45.37  Aligned_cols=22  Identities=14%  Similarity=0.218  Sum_probs=19.2

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALLS   29 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~   29 (233)
                      +.|.|+|. +|+||||++..|+.
T Consensus         3 ~~I~i~G~-~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGC-PGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECC-TTSSHHHHHHHHHH
T ss_pred             eEEEEecC-CCCCHHHHHHHHHh
Confidence            46888888 99999999988887

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=95.89  E-value=0.0068  Score=45.62  Aligned_cols=25  Identities=20%  Similarity=0.186  Sum_probs=21.8

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      ...|+++|. +|+||||++..|+..+
T Consensus         4 g~~I~l~G~-~GsGKST~~~~La~~l   28 (186)
T 3cm0_A            4 GQAVIFLGP-PGAGKGTQASRLAQEL   28 (186)
T ss_dssp             EEEEEEECC-TTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHHHh
Confidence            347888988 9999999999998876

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=95.87  E-value=0.015  Score=45.41  Aligned_cols=36  Identities=19%  Similarity=0.246  Sum_probs=31.0

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCC-eeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGI-SCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~-~Vl~~d   42 (233)
                      .+.|.+.|. .|+||||.+..|+..|..+|+ .|.+..
T Consensus         3 g~~i~~eG~-~gsGKsT~~~~l~~~l~~~~~~~v~~~r   39 (213)
T 4tmk_A            3 SKYIVIEGL-EGAGKTTARNVVVETLEQLGIRDMVFTR   39 (213)
T ss_dssp             CCEEEEEEC-TTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHHHHHHcCCCcceeee
Confidence            357888888 999999999999999999998 665554

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=95.85  E-value=0.0067  Score=46.87  Aligned_cols=37  Identities=22%  Similarity=0.208  Sum_probs=26.7

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHH-----HcC-CeeeEE
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFK-----KRG-ISCIGM   41 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~-----~~G-~~Vl~~   41 (233)
                      .+|-++.|+|. +|+|||+.+..++..+.     ++| +++.+.
T Consensus         3 ~~~mi~l~tG~-pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~   45 (199)
T 2r2a_A            3 AMAEICLITGT-PGSGKTLKMVSMMANDEMFKPDENGIRRKVFT   45 (199)
T ss_dssp             -CCCEEEEECC-TTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEE
T ss_pred             cceeEEEEEeC-CCCCHHHHHHHHHHHHHhhcccccCceEEEEe
Confidence            34557788888 99999999988876665     567 444443

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=95.83  E-value=0.011  Score=53.57  Aligned_cols=37  Identities=30%  Similarity=0.423  Sum_probs=32.9

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +...|.++|. .|+||||++..|+..|.++|+++..+|
T Consensus        51 ~g~lIvLtGl-sGSGKSTlAr~La~~L~~~G~~~v~lD   87 (630)
T 1x6v_B           51 RGCTVWLTGL-SGAGKTTVSMALEEYLVCHGIPCYTLD   87 (630)
T ss_dssp             CCEEEEEECS-TTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred             CCCEEEEEeC-CCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence            3457889998 999999999999999999999988876

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=95.82  E-value=0.01  Score=44.16  Aligned_cols=28  Identities=21%  Similarity=0.222  Sum_probs=24.0

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHc
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKR   34 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~   34 (233)
                      .+.+.|+|. +|+|||+++..++..+...
T Consensus        43 ~~~vll~G~-~G~GKT~la~~~~~~~~~~   70 (187)
T 2p65_A           43 KNNPILLGD-PGVGKTAIVEGLAIKIVQG   70 (187)
T ss_dssp             SCEEEEESC-GGGCHHHHHHHHHHHHHTT
T ss_pred             CCceEEECC-CCCCHHHHHHHHHHHHHhc
Confidence            456788888 9999999999999999773

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=95.81  E-value=0.011  Score=46.64  Aligned_cols=35  Identities=17%  Similarity=0.130  Sum_probs=30.0

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGM   41 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~   41 (233)
                      +.+.|+|.|. .|+||||++..|+..|.. |.+|...
T Consensus        25 ~g~~i~i~G~-~GsGKsT~~~~l~~~l~~-~~~~~~~   59 (229)
T 4eaq_A           25 MSAFITFEGP-EGSGKTTVINEVYHRLVK-DYDVIMT   59 (229)
T ss_dssp             CCEEEEEECC-TTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred             CCeEEEEEcC-CCCCHHHHHHHHHHHHhc-CCCceee
Confidence            3567888888 999999999999999988 8888654

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=95.81  E-value=0.011  Score=45.78  Aligned_cols=36  Identities=17%  Similarity=0.322  Sum_probs=29.6

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +...|+|+|. +||||||+...|+..+... +++..++
T Consensus        37 ~~~~i~ivG~-~gvGKTtl~~~l~~~~~~~-~~~~~i~   72 (226)
T 2hf9_A           37 GVVAFDFMGA-IGSGKTLLIEKLIDNLKDK-YKIACIA   72 (226)
T ss_dssp             TCEEEEEEES-TTSSHHHHHHHHHHHHTTT-CCEEEEE
T ss_pred             CCeEEEEEcC-CCCCHHHHHHHHHHHhccC-CeEEEEE
Confidence            3567888888 9999999999999987655 6777766

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.80  E-value=0.006  Score=50.71  Aligned_cols=36  Identities=25%  Similarity=0.274  Sum_probs=26.5

Q ss_pred             CCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          3 NKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         3 ~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+|.+.|+|+|. +|+||||++..||..+   |..+.-.|
T Consensus         2 ~~m~~~i~i~Gp-tGsGKTtla~~La~~l---~~~iis~D   37 (323)
T 3crm_A            2 SSLPPAIFLMGP-TAAGKTDLAMALADAL---PCELISVD   37 (323)
T ss_dssp             -CCCEEEEEECC-TTSCHHHHHHHHHHHS---CEEEEEEC
T ss_pred             CCCCcEEEEECC-CCCCHHHHHHHHHHHc---CCcEEecc
Confidence            344568899998 9999999999998765   44444444

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.80  E-value=0.0076  Score=46.10  Aligned_cols=24  Identities=17%  Similarity=0.207  Sum_probs=21.6

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      ++|.|+|. .|+||||++..|+..|
T Consensus         3 ~~i~i~G~-~GsGKst~~~~la~~l   26 (208)
T 3ake_A            3 GIVTIDGP-SASGKSSVARRVAAAL   26 (208)
T ss_dssp             SEEEEECS-TTSSHHHHHHHHHHHH
T ss_pred             eEEEEECC-CCCCHHHHHHHHHHhc
Confidence            38999999 9999999999998877

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=95.79  E-value=0.008  Score=45.34  Aligned_cols=25  Identities=20%  Similarity=0.380  Sum_probs=21.6

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      .+.|+|+|. +|+||||++..|+..+
T Consensus         3 ~~~I~l~G~-~GsGKsT~a~~L~~~~   27 (196)
T 1tev_A            3 PLVVFVLGG-PGAGKGTQCARIVEKY   27 (196)
T ss_dssp             CEEEEEECC-TTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECC-CCCCHHHHHHHHHHHh
Confidence            357888888 9999999999998876

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=95.79  E-value=0.0087  Score=49.02  Aligned_cols=35  Identities=23%  Similarity=0.375  Sum_probs=28.3

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcC--CeeeEE
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRG--ISCIGM   41 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G--~~Vl~~   41 (233)
                      ..+|+|+|. +|+||||++..|+..+...|  .++..+
T Consensus        31 ~~ii~I~G~-sGsGKSTla~~L~~~l~~~g~~~~~~~i   67 (290)
T 1odf_A           31 PLFIFFSGP-QGSGKSFTSIQIYNHLMEKYGGEKSIGY   67 (290)
T ss_dssp             CEEEEEECC-TTSSHHHHHHHHHHHHHHHHGGGSCEEE
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHHHhhhcCCCCceEEE
Confidence            457899988 99999999999999998765  444443

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=95.78  E-value=0.0073  Score=53.26  Aligned_cols=35  Identities=6%  Similarity=-0.077  Sum_probs=31.1

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHc-CCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKR-GISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~-G~~Vl~~d   42 (233)
                      ..+.|++. +|+||||++.++|...+.+ |.+|+++.
T Consensus       243 ~l~li~G~-pG~GKT~lal~~a~~~a~~~g~~vl~~s  278 (503)
T 1q57_A          243 EVIMVTSG-SGMVMSTFVRQQALQWGTAMGKKVGLAM  278 (503)
T ss_dssp             CEEEEEES-SCHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred             eEEEEeec-CCCCchHHHHHHHHHHHHhcCCcEEEEe
Confidence            45677777 9999999999999999987 99999987

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=95.75  E-value=0.0083  Score=46.63  Aligned_cols=26  Identities=19%  Similarity=0.308  Sum_probs=22.8

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      ++..|++.|. +|+||||++..|+..|
T Consensus         3 ~~~~I~l~G~-~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            3 ESIRMVLIGP-PGAGKGTQAPNLQERF   28 (220)
T ss_dssp             CCCEEEEECC-TTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECC-CCCCHHHHHHHHHHHc
Confidence            4567899998 9999999999999877

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=95.75  E-value=0.008  Score=46.81  Aligned_cols=26  Identities=19%  Similarity=0.319  Sum_probs=23.1

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      +++.|+|.|. +|+||||++..|+..|
T Consensus         4 ~~~~I~l~G~-~GsGKsT~~~~La~~l   29 (222)
T 1zak_A            4 DPLKVMISGA-PASGKGTQCELIKTKY   29 (222)
T ss_dssp             CSCCEEEEES-TTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECC-CCCCHHHHHHHHHHHh
Confidence            4567999999 9999999999999887

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=95.71  E-value=0.004  Score=46.72  Aligned_cols=26  Identities=23%  Similarity=0.296  Sum_probs=17.6

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      +++.|.|+|. +|+||||++..|+..|
T Consensus         4 ~~~~I~l~G~-~GsGKST~a~~La~~l   29 (183)
T 2vli_A            4 RSPIIWINGP-FGVGKTHTAHTLHERL   29 (183)
T ss_dssp             -CCEEEEECC-C----CHHHHHHHHHS
T ss_pred             CCeEEEEECC-CCCCHHHHHHHHHHhc
Confidence            3567899998 9999999999888765

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=95.70  E-value=0.0093  Score=49.52  Aligned_cols=36  Identities=14%  Similarity=0.011  Sum_probs=30.8

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHc------CCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKR------GISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~------G~~Vl~~d   42 (233)
                      ..++.|+|. +|+|||+++.+++...+..      |.+|++++
T Consensus       107 G~i~~i~G~-~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~  148 (324)
T 2z43_A          107 RTMTEFFGE-FGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID  148 (324)
T ss_dssp             TSEEEEEES-TTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred             CcEEEEECC-CCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence            356788888 9999999999999987655      78999998

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=95.67  E-value=0.01  Score=46.49  Aligned_cols=26  Identities=23%  Similarity=0.307  Sum_probs=23.1

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      +.|+|+|.|. +|+||+|.|..|+..+
T Consensus        28 k~kiI~llGp-PGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           28 KAKVIFVLGG-PGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             SCEEEEEECC-TTCCHHHHHHHHHHHH
T ss_pred             CCcEEEEECC-CCCCHHHHHHHHHHHH
Confidence            4678999998 9999999999999876

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.66  E-value=0.0068  Score=50.75  Aligned_cols=24  Identities=33%  Similarity=0.459  Sum_probs=21.7

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      ++|+|+|+ +|+||||++..||..+
T Consensus         8 ~lI~I~Gp-tgSGKTtla~~La~~l   31 (340)
T 3d3q_A            8 FLIVIVGP-TASGKTELSIEVAKKF   31 (340)
T ss_dssp             EEEEEECS-TTSSHHHHHHHHHHHT
T ss_pred             ceEEEECC-CcCcHHHHHHHHHHHc
Confidence            48889998 9999999999999877

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=95.59  E-value=0.0079  Score=47.06  Aligned_cols=26  Identities=27%  Similarity=0.480  Sum_probs=22.0

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      +++.|+|.|. +|+||||++..|+..+
T Consensus         6 ~~~~I~l~G~-~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            6 RLLRAVIMGA-PGSGKGTVSSRITTHF   31 (227)
T ss_dssp             -CCEEEEEEC-TTSSHHHHHHHHHHHS
T ss_pred             cCcEEEEECC-CCCCHHHHHHHHHHHc
Confidence            3567999999 9999999999998865

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=95.55  E-value=0.0076  Score=49.96  Aligned_cols=38  Identities=21%  Similarity=0.225  Sum_probs=32.0

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeee
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPI   44 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~   44 (233)
                      ++++++.|+|. .|+||||+...|+...  .|+|++++.|.
T Consensus         2 ~~i~v~~i~G~-~GaGKTTll~~l~~~~--~~~~~aVi~~d   39 (318)
T 1nij_A            2 NPIAVTLLTGF-LGAGKTTLLRHILNEQ--HGYKIAVIENE   39 (318)
T ss_dssp             CCEEEEEEEES-SSSSCHHHHHHHHHSC--CCCCEEEECSS
T ss_pred             CcccEEEEEec-CCCCHHHHHHHHHhhc--CCCcEEEEEec
Confidence            35789999999 9999999998887753  78999999854

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=95.54  E-value=0.02  Score=48.08  Aligned_cols=36  Identities=14%  Similarity=0.126  Sum_probs=32.6

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..+|+|+|. +|+||||+.-.|+..+...+.+|.++-
T Consensus        74 ~~~v~lvG~-pgaGKSTLln~L~~~~~~~~~~v~V~~  109 (349)
T 2www_A           74 AFRVGLSGP-PGAGKSTFIEYFGKMLTERGHKLSVLA  109 (349)
T ss_dssp             CEEEEEECC-TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             ceEEEEEcC-CCCCHHHHHHHHHHHhhhcCCeEEEEe
Confidence            568999999 999999999999999999999988864

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=95.53  E-value=0.013  Score=44.83  Aligned_cols=28  Identities=21%  Similarity=0.405  Sum_probs=23.4

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISC   38 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~V   38 (233)
                      ..|+|+|. +|+||||++..|+..+   |..+
T Consensus        21 ~~I~l~G~-~GsGKST~a~~La~~l---~~~~   48 (201)
T 2cdn_A           21 MRVLLLGP-PGAGKGTQAVKLAEKL---GIPQ   48 (201)
T ss_dssp             CEEEEECC-TTSSHHHHHHHHHHHH---TCCE
T ss_pred             eEEEEECC-CCCCHHHHHHHHHHHh---CCcE
Confidence            46888888 9999999999999877   5554

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.49  E-value=0.018  Score=46.50  Aligned_cols=36  Identities=11%  Similarity=0.040  Sum_probs=28.4

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHc----------CCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKR----------GISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~----------G~~Vl~~d   42 (233)
                      -.++.|+|. +|+||||++..++..++..          +.+|+++.
T Consensus        30 G~i~~i~G~-~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~   75 (279)
T 1nlf_A           30 GTVGALVSP-GGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLP   75 (279)
T ss_dssp             TSEEEEEES-TTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEE
T ss_pred             CCEEEEEcC-CCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEE
Confidence            357888888 9999999999999977642          34677765

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=95.46  E-value=0.19  Score=45.94  Aligned_cols=82  Identities=13%  Similarity=0.035  Sum_probs=48.8

Q ss_pred             CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhh
Q psy14904        116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANE  195 (233)
Q Consensus       116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~  195 (233)
                      .+.+.|+|+||...  +.  .......... ..+++|.++..+.-.+....++.++..+++++ +|+||++ .. ...++
T Consensus        73 ~~~~nliDTpG~~~--f~--~~~~~~l~~a-d~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~i-lv~NKiD-~~-~~~~~  144 (665)
T 2dy1_A           73 GHRVFLLDAPGYGD--FV--GEIRGALEAA-DAALVAVSAEAGVQVGTERAWTVAERLGLPRM-VVVTKLD-KG-GDYYA  144 (665)
T ss_dssp             TEEEEEEECCCSGG--GH--HHHHHHHHHC-SEEEEEEETTTCSCHHHHHHHHHHHHTTCCEE-EEEECGG-GC-CCHHH
T ss_pred             CEEEEEEeCCCccc--hH--HHHHHHHhhc-CcEEEEEcCCcccchhHHHHHHHHHHccCCEE-EEecCCc-hh-hhHHH
Confidence            56788999986531  11  0112222333 35777777655433344555666667788866 7899998 33 33455


Q ss_pred             hHHHHHhhcC
Q psy14904        196 NYIELTKYLN  205 (233)
Q Consensus       196 ~~~~l~~~~~  205 (233)
                      ..+.+++.++
T Consensus       145 ~~~~l~~~l~  154 (665)
T 2dy1_A          145 LLEDLRSTLG  154 (665)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            6677777666

>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*

Probab=95.45  E-value=0.02  Score=49.25  Aligned_cols=36  Identities=19%  Similarity=0.119  Sum_probs=32.0

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ++.++|.|||+   -|||||+.-|+..|.+.|++|.++-
T Consensus        47 ~~~~vI~VTGT---nGKtTT~~~l~~iL~~~G~~~g~~~   82 (422)
T 1w78_A           47 PAPFVFTVAGT---NGKGTTCRTLESILMAAGYKVGVYS   82 (422)
T ss_dssp             CSSEEEEEECS---SCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             cCCcEEEEeCC---cChHHHHHHHHHHHHHCCCCEEEEC
Confidence            35689999998   6899999999999999999998764

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=95.45  E-value=0.012  Score=44.78  Aligned_cols=24  Identities=29%  Similarity=0.396  Sum_probs=21.4

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFK   32 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~   32 (233)
                      .|+|.|. .|+||||++..|+..|.
T Consensus         2 ~I~i~G~-~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            2 KIAIFGT-VGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEEECC-TTSCHHHHHHHHHHHHC
T ss_pred             EEEEECC-CccCHHHHHHHHHHhcC
Confidence            5888998 99999999999998873

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.44  E-value=0.025  Score=46.13  Aligned_cols=36  Identities=22%  Similarity=0.381  Sum_probs=30.0

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCC----eeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGI----SCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~----~Vl~~d   42 (233)
                      ...+.++|. +|+|||+++..+|..+...++    .+..++
T Consensus        67 ~~~vll~G~-~GtGKT~la~~la~~l~~~~~~~~~~~~~~~  106 (309)
T 3syl_A           67 TLHMSFTGN-PGTGKTTVALKMAGLLHRLGYVRKGHLVSVT  106 (309)
T ss_dssp             CCEEEEEEC-TTSSHHHHHHHHHHHHHHTTSSSSCCEEEEC
T ss_pred             CceEEEECC-CCCCHHHHHHHHHHHHHhcCCcCCCcEEEEc
Confidence            446899998 999999999999999988765    555555

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=95.43  E-value=0.012  Score=45.12  Aligned_cols=29  Identities=21%  Similarity=0.395  Sum_probs=23.7

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeee
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCI   39 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl   39 (233)
                      .+|.|+|. .|+||||++..|+..+   |..+.
T Consensus        13 ~iIgltG~-~GSGKSTva~~L~~~l---g~~vi   41 (192)
T 2grj_A           13 MVIGVTGK-IGTGKSTVCEILKNKY---GAHVV   41 (192)
T ss_dssp             EEEEEECS-TTSSHHHHHHHHHHHH---CCEEE
T ss_pred             eEEEEECC-CCCCHHHHHHHHHHhc---CCEEE
Confidence            47999998 9999999998888764   76553

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=95.42  E-value=0.012  Score=46.51  Aligned_cols=24  Identities=25%  Similarity=0.369  Sum_probs=21.7

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      .+|+|+|. +|+||||++..|+..|
T Consensus        10 ~~i~i~G~-~GsGKsTla~~la~~l   33 (233)
T 3r20_A           10 LVVAVDGP-AGTGKSSVSRGLARAL   33 (233)
T ss_dssp             CEEEEECC-TTSSHHHHHHHHHHHH
T ss_pred             eEEEEECC-CCCCHHHHHHHHHHHh
Confidence            47999999 9999999999998887

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=95.40  E-value=0.02  Score=46.55  Aligned_cols=31  Identities=23%  Similarity=0.268  Sum_probs=24.8

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG   40 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~   40 (233)
                      .+.+|+|+|. .|+||||++..|+ .   .|..+.-
T Consensus        74 ~~~iI~I~G~-~GSGKSTva~~La-~---lg~~~id  104 (281)
T 2f6r_A           74 GLYVLGLTGI-SGSGKSSVAQRLK-N---LGAYIID  104 (281)
T ss_dssp             TCEEEEEEEC-TTSCHHHHHHHHH-H---HTCEEEE
T ss_pred             CCEEEEEECC-CCCCHHHHHHHHH-H---CCCcEEe
Confidence            3568999999 9999999998888 3   3776543

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=95.39  E-value=0.0081  Score=49.94  Aligned_cols=32  Identities=28%  Similarity=0.105  Sum_probs=27.0

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.+.|+|. +|+|||+++..++..   .|.+|++++
T Consensus       124 sviLI~Gp-PGsGKTtLAlqlA~~---~G~~VlyIs  155 (331)
T 2vhj_A          124 GMVIVTGK-GNSGKTPLVHALGEA---LGGKDKYAT  155 (331)
T ss_dssp             EEEEEECS-CSSSHHHHHHHHHHH---HHTTSCCEE
T ss_pred             cEEEEEcC-CCCCHHHHHHHHHHh---CCCCEEEEE
Confidence            45667777 999999999999887   688999887

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=95.38  E-value=0.023  Score=50.33  Aligned_cols=36  Identities=22%  Similarity=0.145  Sum_probs=31.1

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..+|+++|. +|+||||++..|+..|...+.++.+++
T Consensus        35 ~~lIvlvGl-pGSGKSTia~~La~~L~~~~~d~~v~s   70 (520)
T 2axn_A           35 PTVIVMVGL-PARGKTYISKKLTRYLNWIGVPTKVFN   70 (520)
T ss_dssp             CEEEEEECC-TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHHHHhhcCCCeEEec
Confidence            346777777 999999999999999998898887776

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=95.36  E-value=0.02  Score=47.58  Aligned_cols=36  Identities=17%  Similarity=0.113  Sum_probs=28.8

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHH--cCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKK--RGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~--~G~~Vl~~d   42 (233)
                      ..+|+|+|. .|+||||++..|+..+..  .+.+|.++.
T Consensus        92 p~iigI~Gp-sGSGKSTl~~~L~~ll~~~~~~~~v~~i~  129 (321)
T 3tqc_A           92 PYIIGIAGS-VAVGKSTTSRVLKALLSRWPDHPNVEVIT  129 (321)
T ss_dssp             CEEEEEECC-TTSSHHHHHHHHHHHHTTSTTCCCEEEEE
T ss_pred             CEEEEEECC-CCCCHHHHHHHHHHHhcccCCCCeEEEEe
Confidence            448999998 999999999999998874  245677664

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=95.35  E-value=0.015  Score=45.74  Aligned_cols=26  Identities=19%  Similarity=0.238  Sum_probs=22.7

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      .+..|+|.|. .|+||||++..|+..|
T Consensus        15 ~~~~I~l~G~-~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           15 KGVRAVLLGP-PGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             CCCEEEEECC-TTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECC-CCCCHHHHHHHHHHHh
Confidence            3457888888 9999999999999887

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=95.28  E-value=0.015  Score=42.90  Aligned_cols=23  Identities=17%  Similarity=0.355  Sum_probs=20.7

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      .|.|+|. .|+||||++..|+..+
T Consensus         2 ~I~l~G~-~GsGKsT~a~~L~~~l   24 (168)
T 2pt5_A            2 RIYLIGF-MCSGKSTVGSLLSRSL   24 (168)
T ss_dssp             EEEEESC-TTSCHHHHHHHHHHHH
T ss_pred             eEEEECC-CCCCHHHHHHHHHHHh
Confidence            5888988 9999999999998877

>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A

Probab=95.23  E-value=0.022  Score=49.08  Aligned_cols=35  Identities=20%  Similarity=0.135  Sum_probs=31.7

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.++|.|||+   -|||||+.-|+..|...|++|.++-
T Consensus        38 ~~~vI~VtGT---nGKtTT~~~l~~iL~~~G~~vg~~~   72 (428)
T 1jbw_A           38 QGRYIHVTGT---NGKGSAANAIAHVLEASGLTVGLYT   72 (428)
T ss_dssp             SSCEEEEECS---SCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             cCcEEEEECC---CChHHHHHHHHHHHHHCCCCEEEEe
Confidence            5689999998   6899999999999999999999874

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=95.20  E-value=0.015  Score=46.39  Aligned_cols=25  Identities=20%  Similarity=0.231  Sum_probs=22.2

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      ..+|+|+|. .|+||||++..|+..|
T Consensus        27 g~~I~I~G~-~GsGKSTl~k~La~~L   51 (252)
T 4e22_A           27 APVITVDGP-SGAGKGTLCKALAESL   51 (252)
T ss_dssp             SCEEEEECC-TTSSHHHHHHHHHHHT
T ss_pred             CcEEEEECC-CCCCHHHHHHHHHHhc
Confidence            468999999 9999999999998766

>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*

Probab=95.20  E-value=0.027  Score=48.80  Aligned_cols=36  Identities=19%  Similarity=0.218  Sum_probs=32.5

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ...++|.|||+   -|||||+.-|+..|.+.|+||+++-
T Consensus        50 ~~~~vI~VtGT---NGKgSt~~~l~~iL~~~G~~vg~~t   85 (437)
T 3nrs_A           50 PAPKIFTVAGT---NGKGTTCCTLEAILLAAGLRVGVYS   85 (437)
T ss_dssp             SSSEEEEEECS---SSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             ccCCEEEEECC---cChHHHHHHHHHHHHHCCCcEEEEC
Confidence            45789999998   6899999999999999999999875

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=95.20  E-value=0.022  Score=51.79  Aligned_cols=35  Identities=23%  Similarity=0.380  Sum_probs=30.2

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEee
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKP   43 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp   43 (233)
                      ...|.|+ +|+|||+|.+.+...+.++|.+|+++=|
T Consensus       207 ~~lI~GP-PGTGKT~ti~~~I~~l~~~~~~ILv~a~  241 (646)
T 4b3f_X          207 LAIIHGP-PGTGKTTTVVEIILQAVKQGLKVLCCAP  241 (646)
T ss_dssp             EEEEECC-TTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             ceEEECC-CCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence            4556666 9999999999999999999999999753

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=95.18  E-value=0.017  Score=44.63  Aligned_cols=26  Identities=19%  Similarity=0.332  Sum_probs=22.1

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      +.+.|+|+|+ .|+||||++..|+..+
T Consensus         7 ~g~~i~l~Gp-sGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            7 RGLLIVLSGP-SGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CCCEEEEECC-TTSCHHHHHHHHHHST
T ss_pred             CCcEEEEECc-CCCCHHHHHHHHHhhC
Confidence            3568899998 9999999999888765

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=95.17  E-value=0.021  Score=48.49  Aligned_cols=37  Identities=22%  Similarity=0.233  Sum_probs=33.0

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeee
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPI   44 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~   44 (233)
                      ..++|+|+ +|+||||+...|+..+...|.+|.++||.
T Consensus        36 ~~~~i~G~-~G~GKs~~~~~~~~~~~~~~~~~~~~D~~   72 (392)
T 4ag6_A           36 SNWTILAK-PGAGKSFTAKMLLLREYMQGSRVIIIDPE   72 (392)
T ss_dssp             CCEEEECC-TTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CceEEEcC-CCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            45788888 89999999999999998899999999974

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=95.17  E-value=0.019  Score=45.58  Aligned_cols=30  Identities=20%  Similarity=0.154  Sum_probs=24.0

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCI   39 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl   39 (233)
                      ...|.|+|. +|+||||++..|+..+   |..+.
T Consensus        29 ~~~I~l~G~-~GsGKsT~a~~L~~~~---g~~~i   58 (243)
T 3tlx_A           29 DGRYIFLGA-PGSGKGTQSLNLKKSH---CYCHL   58 (243)
T ss_dssp             CEEEEEECC-TTSSHHHHHHHHHHHH---CCEEE
T ss_pred             CcEEEEECC-CCCCHHHHHHHHHHHh---CCeEE
Confidence            456888888 9999999999998776   54443

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=95.15  E-value=0.18  Score=42.93  Aligned_cols=67  Identities=13%  Similarity=0.016  Sum_probs=39.6

Q ss_pred             cCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904        115 NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ  186 (233)
Q Consensus       115 ~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~  186 (233)
                      ..+.+.|+||||.-.  +..  .....+.. ..-+++|.++..+...++...+..++..+++.+-+++||++
T Consensus        64 ~~~~~~iiDtpG~~~--f~~--~~~~~~~~-aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~D  130 (397)
T 1d2e_A           64 AARHYAHTDCPGHAD--YVK--NMITGTAP-LDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKAD  130 (397)
T ss_dssp             SSCEEEEEECSSHHH--HHH--HHHHTSSC-CSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGG
T ss_pred             CCeEEEEEECCChHH--HHH--HHHhhHhh-CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcc
Confidence            357899999987521  000  00000111 12477777776654455555566666778875557899998

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=95.15  E-value=0.018  Score=45.03  Aligned_cols=36  Identities=17%  Similarity=-0.008  Sum_probs=29.0

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHH------cCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKK------RGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~------~G~~Vl~~d   42 (233)
                      ..++.|+|. +|+||||++..|+.....      .+.++++++
T Consensus        24 G~~~~i~G~-~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~   65 (243)
T 1n0w_A           24 GSITEMFGE-FRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID   65 (243)
T ss_dssp             TSEEEEECC-TTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred             CeEEEEECC-CCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence            357888887 999999999999986433      367899887

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=95.14  E-value=0.018  Score=45.64  Aligned_cols=25  Identities=24%  Similarity=0.409  Sum_probs=22.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      +.+|+|.|. .|+||||++..|+..+
T Consensus        27 ~~~i~l~G~-~GsGKSTl~k~La~~l   51 (246)
T 2bbw_A           27 LLRAVILGP-PGSGKGTVCQRIAQNF   51 (246)
T ss_dssp             CCEEEEECC-TTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECC-CCCCHHHHHHHHHHHh
Confidence            468999999 9999999999999877

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.11  E-value=0.025  Score=46.04  Aligned_cols=35  Identities=20%  Similarity=0.303  Sum_probs=30.5

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..+.+.|. +|+|||+++..++..+...+..+..++
T Consensus        48 ~~~ll~G~-~GtGKt~la~~la~~~~~~~~~~~~~~   82 (311)
T 4fcw_A           48 GSFLFLGP-TGVGKTELAKTLAATLFDTEEAMIRID   82 (311)
T ss_dssp             EEEEEESC-SSSSHHHHHHHHHHHHHSCGGGEEEEE
T ss_pred             eEEEEECC-CCcCHHHHHHHHHHHHcCCCcceEEee
Confidence            46888888 999999999999999988777777776

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=95.09  E-value=0.028  Score=45.86  Aligned_cols=33  Identities=27%  Similarity=0.238  Sum_probs=27.6

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.+.+.|. +|+|||+++..+|..+   |.++..++
T Consensus        36 p~~lLl~Gp-pGtGKT~la~aiA~~l---~~~~i~v~   68 (293)
T 3t15_A           36 PLILGIWGG-KGQGKSFQCELVFRKM---GINPIMMS   68 (293)
T ss_dssp             CSEEEEEEC-TTSCHHHHHHHHHHHH---TCCCEEEE
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHHHh---CCCEEEEe
Confidence            356788888 9999999999999988   77777776

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.08  E-value=0.034  Score=46.64  Aligned_cols=36  Identities=19%  Similarity=0.272  Sum_probs=31.1

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHc--------CCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKR--------GISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~--------G~~Vl~~d   42 (233)
                      .+.++|+|. +|+|||+++..++..+.+.        +..+..++
T Consensus        45 ~~~vll~G~-~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~   88 (384)
T 2qby_B           45 KFSNLFLGL-TGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN   88 (384)
T ss_dssp             CCEEEEEEC-TTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred             CCcEEEECC-CCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence            457899998 9999999999999999776        77887776

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=95.08  E-value=0.019  Score=43.78  Aligned_cols=35  Identities=20%  Similarity=0.214  Sum_probs=28.5

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.+.++|. +|+|||+++..++..+...++++.++.
T Consensus        39 ~~~ll~G~-~G~GKT~l~~~l~~~~~~~~~~~~~~~   73 (226)
T 2chg_A           39 PHLLFSGP-PGTGKTATAIALARDLFGENWRDNFIE   73 (226)
T ss_dssp             CCEEEECS-TTSSHHHHHHHHHHHHHGGGGGGGEEE
T ss_pred             CeEEEECC-CCCCHHHHHHHHHHHHhccccccceEE
Confidence            35888888 999999999999999987776655543

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=95.07  E-value=0.012  Score=44.92  Aligned_cols=27  Identities=15%  Similarity=0.320  Sum_probs=22.9

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      .+...|+|+|. .|+||||++..|+..+
T Consensus         4 ~~g~~i~l~G~-~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            4 EKGLLIVLSGP-SGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCCEEEEECS-TTSCHHHHHHHHHHCT
T ss_pred             CCCCEEEEECC-CCCCHHHHHHHHHHhh
Confidence            34568999999 9999999998888776

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=95.05  E-value=0.028  Score=48.93  Aligned_cols=34  Identities=21%  Similarity=0.285  Sum_probs=29.3

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCC-eeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGI-SCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~-~Vl~~d   42 (233)
                      .+.|.|. +|+||||++..++..|.+.|. +|+++-
T Consensus        47 ~~li~G~-aGTGKT~ll~~~~~~l~~~~~~~il~~a   81 (459)
T 3upu_A           47 HVTINGP-AGTGATTLTKFIIEALISTGETGIILAA   81 (459)
T ss_dssp             EEEEECC-TTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             EEEEEeC-CCCCHHHHHHHHHHHHHhcCCceEEEec
Confidence            6677777 999999999999999999987 777764

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=95.04  E-value=0.15  Score=51.18  Aligned_cols=36  Identities=19%  Similarity=0.279  Sum_probs=33.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      -++|-|.|+ .|+||||++++.+..-.++|..++++|
T Consensus      1431 g~~iei~g~-~~sGkttl~~~~~a~~~~~g~~~~~i~ 1466 (1706)
T 3cmw_A         1431 GRIVEIYGP-ESSGKTTLTLQVIAAAQREGKTCAFID 1466 (1706)
T ss_dssp             TSEEEEECS-TTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CCEEEEEcC-CCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence            468999999 999999999999999999999999998

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=95.03  E-value=0.018  Score=44.40  Aligned_cols=28  Identities=18%  Similarity=0.362  Sum_probs=22.6

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeee
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCI   39 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl   39 (233)
                      .|+|+|. +|+||||++..|+..+   |..+.
T Consensus         2 ~I~l~G~-~GsGKsT~a~~L~~~~---~~~~i   29 (216)
T 3fb4_A            2 NIVLMGL-PGAGKGTQAEQIIEKY---EIPHI   29 (216)
T ss_dssp             EEEEECS-TTSSHHHHHHHHHHHH---CCCEE
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHh---CCcEe
Confidence            4788888 9999999999998876   55443

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=95.01  E-value=0.025  Score=43.64  Aligned_cols=28  Identities=21%  Similarity=0.406  Sum_probs=23.1

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeee
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCI   39 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl   39 (233)
                      .|+|+|. +|+||||++..|+..+   |..+.
T Consensus         2 ~I~l~G~-~GsGKsT~a~~L~~~~---g~~~i   29 (214)
T 1e4v_A            2 RIILLGA-PVAGKGTQAQFIMEKY---GIPQI   29 (214)
T ss_dssp             EEEEEES-TTSSHHHHHHHHHHHH---CCCEE
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHh---CCeEE
Confidence            3788888 9999999999999877   65543

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=94.98  E-value=0.019  Score=44.00  Aligned_cols=33  Identities=27%  Similarity=0.363  Sum_probs=24.9

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ++.+|+|+|. +|+||||++..|+..+.    .+.+++
T Consensus        20 ~~~~i~i~G~-~GsGKSTl~~~L~~~~~----~~~~i~   52 (207)
T 2qt1_A           20 KTFIIGISGV-TNSGKTTLAKNLQKHLP----NCSVIS   52 (207)
T ss_dssp             CCEEEEEEES-TTSSHHHHHHHHHTTST----TEEEEE
T ss_pred             CCeEEEEECC-CCCCHHHHHHHHHHhcC----CcEEEe
Confidence            4568999999 99999999988776542    355555

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=94.92  E-value=0.03  Score=43.27  Aligned_cols=27  Identities=26%  Similarity=0.363  Sum_probs=22.1

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISC   38 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~V   38 (233)
                      .+|+|+|. .|+||||++..|+.    .|+.+
T Consensus         5 ~~I~i~G~-~GSGKST~~~~L~~----lg~~~   31 (218)
T 1vht_A            5 YIVALTGG-IGSGKSTVANAFAD----LGINV   31 (218)
T ss_dssp             EEEEEECC-TTSCHHHHHHHHHH----TTCEE
T ss_pred             eEEEEECC-CCCCHHHHHHHHHH----cCCEE
Confidence            57999998 99999999988875    47654

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=94.88  E-value=0.035  Score=45.67  Aligned_cols=37  Identities=14%  Similarity=0.060  Sum_probs=29.6

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHH--HcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFK--KRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~--~~G~~Vl~~d   42 (233)
                      ...+|+|+|. .|+||||++..|+..+.  -.+-+|.+++
T Consensus        79 ~g~iigI~G~-~GsGKSTl~~~L~~~l~~~~~~G~i~vi~  117 (308)
T 1sq5_A           79 IPYIISIAGS-VAVGKSTTARVLQALLSRWPEHRRVELIT  117 (308)
T ss_dssp             CCEEEEEEEC-TTSSHHHHHHHHHHHHTTSTTCCCEEEEE
T ss_pred             CCEEEEEECC-CCCCHHHHHHHHHHHHhhCCCCCeEEEEe
Confidence            4568999999 99999999999999886  3344677765

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=94.85  E-value=0.012  Score=49.09  Aligned_cols=24  Identities=29%  Similarity=0.440  Sum_probs=21.6

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      +.|+|+|+ +|+||||++..||..|
T Consensus        41 ~lIvI~GP-TgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           41 KLLVLMGA-TGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             EEEEEECS-TTSSHHHHHHHHHTTS
T ss_pred             ceEEEECC-CCCCHHHHHHHHHHHC
Confidence            58999999 9999999999998765

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=94.85  E-value=0.038  Score=46.08  Aligned_cols=36  Identities=28%  Similarity=0.350  Sum_probs=31.2

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHc---CCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKR---GISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~---G~~Vl~~d   42 (233)
                      ...++|+|. +|+||||++..++..+...   +..+.+++
T Consensus        45 ~~~vli~G~-~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~   83 (386)
T 2qby_A           45 PNNIFIYGL-TGTGKTAVVKFVLSKLHKKFLGKFKHVYIN   83 (386)
T ss_dssp             CCCEEEEEC-TTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred             CCeEEEECC-CCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence            457899998 9999999999999998876   77887776

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=94.83  E-value=0.019  Score=50.73  Aligned_cols=37  Identities=19%  Similarity=0.213  Sum_probs=30.5

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHH-c-CCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKK-R-GISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~-~-G~~Vl~~d   42 (233)
                      +..+|.++|. .|+||||++..||..|.. + |+.+-++|
T Consensus       394 ~~~~I~l~Gl-sGsGKSTIa~~La~~L~~~~g~r~~~~lD  432 (511)
T 1g8f_A          394 QGFSIVLGNS-LTVSREQLSIALLSTFLQFGGGRYYKIFE  432 (511)
T ss_dssp             CCEEEEECTT-CCSCHHHHHHHHHHHHTTSCSCCCEEECC
T ss_pred             cceEEEeccc-CCCCHHHHHHHHHHHHHHhhcCcceEEec
Confidence            3457889998 999999999999999986 5 46666666

>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2

Probab=94.82  E-value=0.031  Score=48.44  Aligned_cols=35  Identities=17%  Similarity=0.189  Sum_probs=31.7

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.++|.|||+   -|||||+.-|+..|...|++|.++-
T Consensus        51 ~~~vI~VTGT---nGKtTT~~~l~~iL~~~G~~vg~~~   85 (442)
T 1o5z_A           51 EYKTIHIGGT---NGKGSVANMVSNILVSQGYRVGSYY   85 (442)
T ss_dssp             SSEEEEEECS---SSHHHHHHHHHHHHHHHTCCEEEEC
T ss_pred             cCCEEEEECC---cCHHHHHHHHHHHHHHCCCCEEEEC
Confidence            5689999998   6899999999999999999999874

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=94.81  E-value=0.019  Score=44.00  Aligned_cols=25  Identities=28%  Similarity=0.488  Sum_probs=21.8

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      .+.|+|+|. +|+||||++..|+..+
T Consensus        12 ~~~i~l~G~-sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           12 IPPLVVCGP-SGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCCEEEECC-TTSCHHHHHHHHHHHC
T ss_pred             CCEEEEECC-CCCCHHHHHHHHHHhC
Confidence            357888888 9999999999998876

>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*

Probab=94.80  E-value=0.034  Score=48.87  Aligned_cols=36  Identities=17%  Similarity=0.107  Sum_probs=31.8

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +..++|.|||+   -|||||+.-|+..|.+.|++|+.+-
T Consensus        62 ~~~~vI~VtGT---NGKtST~~~l~~iL~~~G~~vG~~t   97 (487)
T 2vos_A           62 RSYPSIHIAGT---NGKTSVARMVDALVTALHRRTGRTT   97 (487)
T ss_dssp             GSSCEEEEECS---SSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             hcCeEEEEeCC---CCcHHHHHHHHHHHHHcCCCeEEEC
Confidence            35689999999   4899999999999999999998763

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=94.79  E-value=0.031  Score=48.39  Aligned_cols=36  Identities=17%  Similarity=0.269  Sum_probs=31.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHc--CCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKR--GISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~--G~~Vl~~d   42 (233)
                      .+.+++.|. +|+||||++..++..+...  +.++.+++
T Consensus       130 ~~~lll~Gp-~G~GKTtLa~aia~~l~~~~~~~~v~~v~  167 (440)
T 2z4s_A          130 YNPLFIYGG-VGLGKTHLLQSIGNYVVQNEPDLRVMYIT  167 (440)
T ss_dssp             SCCEEEECS-SSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred             CCeEEEECC-CCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence            457889998 9999999999999999877  88888876

>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*

Probab=94.75  E-value=0.042  Score=47.27  Aligned_cols=38  Identities=24%  Similarity=0.314  Sum_probs=32.8

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeee
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIA   45 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~   45 (233)
                      ..++|.|+ +|+|||++...+...+.+.|.++.++||-+
T Consensus        54 ~h~~i~G~-tGsGKs~~~~~li~~~~~~g~~viv~Dpkg   91 (437)
T 1e9r_A           54 RHLLVNGA-TGTGKSVLLRELAYTGLLRGDRMVIVDPNG   91 (437)
T ss_dssp             GCEEEEEC-TTSSHHHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred             ceEEEECC-CCCCHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            45778888 899999998889988889999999999753

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=94.72  E-value=0.027  Score=42.40  Aligned_cols=24  Identities=25%  Similarity=0.238  Sum_probs=20.7

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSE   30 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~   30 (233)
                      ..+|+|.|. +|+||||++..|+..
T Consensus         9 g~~i~l~G~-~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            9 GNILLLSGH-PGSGKSTIAEALANL   32 (191)
T ss_dssp             TEEEEEEEC-TTSCHHHHHHHHHTC
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHhc
Confidence            468899998 999999999888765

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=94.70  E-value=0.036  Score=45.99  Aligned_cols=33  Identities=21%  Similarity=0.115  Sum_probs=29.2

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG   40 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~   40 (233)
                      ..++|+|||+   -|||||+.-|++.|.+.|+++.+
T Consensus       107 ~~~~IaVTGT---nGKTTTt~ll~~iL~~~g~~~~~  139 (326)
T 3eag_A          107 HHWVLGVAGT---HGKTTTASMLAWVLEYAGLAPGF  139 (326)
T ss_dssp             GSEEEEEESS---SCHHHHHHHHHHHHHHTTCCCEE
T ss_pred             CCCEEEEECC---CCHHHHHHHHHHHHHHcCCCceE
Confidence            3578999988   79999999999999999998754

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=94.66  E-value=0.02  Score=44.25  Aligned_cols=28  Identities=21%  Similarity=0.433  Sum_probs=22.1

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeee
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCI   39 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl   39 (233)
                      .|.|+|. +|+||||++..|+..+   |..+.
T Consensus         2 ~I~l~G~-~GsGKsT~a~~L~~~~---~~~~i   29 (216)
T 3dl0_A            2 NLVLMGL-PGAGKGTQGERIVEKY---GIPHI   29 (216)
T ss_dssp             EEEEECS-TTSSHHHHHHHHHHHS---SCCEE
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHh---CCcEE
Confidence            3788888 9999999999988655   55443

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=94.64  E-value=0.036  Score=43.18  Aligned_cols=27  Identities=15%  Similarity=0.288  Sum_probs=22.6

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISC   38 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~V   38 (233)
                      .|+|.|. +|+||||++..|+..+   |..+
T Consensus         2 ~I~l~G~-~GsGKsT~a~~La~~l---g~~~   28 (223)
T 2xb4_A            2 NILIFGP-NGSGKGTQGNLVKDKY---SLAH   28 (223)
T ss_dssp             EEEEECC-TTSCHHHHHHHHHHHH---TCEE
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHh---CCeE
Confidence            4788888 9999999999999887   5544

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=94.61  E-value=0.024  Score=46.24  Aligned_cols=25  Identities=24%  Similarity=0.404  Sum_probs=20.2

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      ...|.++|. +|+||||++..|+..+
T Consensus        33 ~~livl~G~-sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           33 PTAFLLGGQ-PGSGKTSLRSAIFEET   57 (287)
T ss_dssp             CEEEEEECC-TTSCTHHHHHHHHHHT
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHHHh
Confidence            356667777 9999999999998765

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=94.59  E-value=0.24  Score=44.58  Aligned_cols=62  Identities=16%  Similarity=0.200  Sum_probs=39.5

Q ss_pred             CCeEEEeccCcccC-ccC-CCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904        117 TDVIILEGIGGFSV-PFH-DNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ  186 (233)
Q Consensus       117 ~D~vlID~~~g~~~-p~~-~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~  186 (233)
                      +.+.|+||||...- ... ..+..+|       -+++|.+...+-..++...++.++..++++ -+++||++
T Consensus        70 ~~i~liDTPGhe~F~~~~~r~~~~aD-------~aILVvDa~~Gv~~qT~e~l~~l~~~~vPi-IVViNKiD  133 (594)
T 1g7s_A           70 PGLFFIDTPGHEAFTTLRKRGGALAD-------LAILIVDINEGFKPQTQEALNILRMYRTPF-VVAANKID  133 (594)
T ss_dssp             CEEEEECCCTTSCCTTSBCSSSBSCS-------EEEEEEETTTCCCHHHHHHHHHHHHTTCCE-EEEEECGG
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhhCC-------EEEEEEECCCCccHhHHHHHHHHHHcCCeE-EEEecccc
Confidence            35899999986421 111 1222222       478888877654445566667777788885 48899998

>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1

Probab=94.58  E-value=0.042  Score=48.37  Aligned_cols=35  Identities=29%  Similarity=0.104  Sum_probs=31.4

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..++|.|||+   .|||||+.-|+..|.+.|+++.++-
T Consensus       107 ~~~vI~VTGT---nGKTTT~~ml~~iL~~~g~~~~~~g  141 (498)
T 1e8c_A          107 NLRLVGVTGT---NGKTTTTQLLAQWSQLLGEISAVMG  141 (498)
T ss_dssp             SSEEEEEESS---SCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cCeEEEEeCC---cChHHHHHHHHHHHHhCCCCEEEEC
Confidence            4689999988   6899999999999999999998764

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=94.57  E-value=0.056  Score=45.12  Aligned_cols=37  Identities=24%  Similarity=0.202  Sum_probs=32.7

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +..+++|+|. +|+||||+...|+..+...+.+|.++.
T Consensus        54 ~g~~v~i~G~-~GaGKSTLl~~l~g~~~~~~g~v~i~~   90 (337)
T 2qm8_A           54 RAIRVGITGV-PGVGKSTTIDALGSLLTAAGHKVAVLA   90 (337)
T ss_dssp             CSEEEEEECC-TTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCeEEEEECC-CCCCHHHHHHHHHHhhhhCCCEEEEEE
Confidence            3568999999 999999999999999988888998865

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=94.53  E-value=0.03  Score=46.21  Aligned_cols=36  Identities=17%  Similarity=0.122  Sum_probs=28.8

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHH------------HcC----CeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFK------------KRG----ISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~------------~~G----~~Vl~~d   42 (233)
                      ..++.|+|. +|+|||+++.+++...+            +.|    .+|++++
T Consensus        98 g~i~~i~G~-~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~  149 (322)
T 2i1q_A           98 QSVTEFAGV-FGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYID  149 (322)
T ss_dssp             TEEEEEEES-TTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEE
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEE
Confidence            356778888 99999999999998642            235    7999998

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=94.51  E-value=0.041  Score=46.10  Aligned_cols=35  Identities=17%  Similarity=0.226  Sum_probs=30.0

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHc-CCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKR-GISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~-G~~Vl~~d   42 (233)
                      +.++|+|. +|+||||++..++..+... +..+..++
T Consensus        45 ~~~li~G~-~G~GKTtl~~~l~~~~~~~~~~~~~~i~   80 (389)
T 1fnn_A           45 PRATLLGR-PGTGKTVTLRKLWELYKDKTTARFVYIN   80 (389)
T ss_dssp             CEEEEECC-TTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred             CeEEEECC-CCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence            37888888 9999999999999998777 67777776

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=94.50  E-value=0.019  Score=45.77  Aligned_cols=33  Identities=21%  Similarity=0.247  Sum_probs=24.9

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ...|.++|. +|+||||++..|+..+   +..+.+++
T Consensus        32 ~~~i~l~G~-~GsGKSTla~~L~~~l---~~~~~~~~   64 (253)
T 2p5t_B           32 PIAILLGGQ-SGAGKTTIHRIKQKEF---QGNIVIID   64 (253)
T ss_dssp             CEEEEEESC-GGGTTHHHHHHHHHHT---TTCCEEEC
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHHhc---CCCcEEEe
Confidence            457888888 9999999999998876   33344555

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=94.49  E-value=0.025  Score=42.47  Aligned_cols=26  Identities=15%  Similarity=0.322  Sum_probs=22.0

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFK   32 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~   32 (233)
                      .+.++|+|+ +|+||||++..|+..+.
T Consensus         5 g~~i~i~Gp-sGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            5 RKTLVLLGA-HGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCEEEEECC-TTSSHHHHHHHHHHHCT
T ss_pred             CCEEEEECC-CCCCHHHHHHHHHhhCC
Confidence            457888988 99999999999888653

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=94.49  E-value=0.055  Score=44.70  Aligned_cols=37  Identities=11%  Similarity=0.041  Sum_probs=29.6

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHc-C-CeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKR-G-ISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~-G-~~Vl~~d   42 (233)
                      +..+++|+|. .|+||||++..|+..+... | .+|.++-
T Consensus        89 ~g~ivgI~G~-sGsGKSTL~~~L~gll~~~~G~~~v~~v~  127 (312)
T 3aez_A           89 VPFIIGVAGS-VAVGKSTTARVLQALLARWDHHPRVDLVT  127 (312)
T ss_dssp             CCEEEEEECC-TTSCHHHHHHHHHHHHHTSTTCCCEEEEE
T ss_pred             CCEEEEEECC-CCchHHHHHHHHHhhccccCCCCeEEEEe
Confidence            3468999998 9999999999999998754 4 4676653

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=94.46  E-value=0.039  Score=43.32  Aligned_cols=29  Identities=28%  Similarity=0.267  Sum_probs=24.7

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISC   38 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~V   38 (233)
                      ..+|.|++. .|+||||++..||..|   |+++
T Consensus        14 ~~iI~i~g~-~gsGk~~i~~~la~~l---g~~~   42 (223)
T 3hdt_A           14 NLIITIERE-YGSGGRIVGKKLAEEL---GIHF   42 (223)
T ss_dssp             CEEEEEEEC-TTSCHHHHHHHHHHHH---TCEE
T ss_pred             CeEEEEeCC-CCCCHHHHHHHHHHHc---CCcE
Confidence            458999998 9999999999999888   6554

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=94.44  E-value=0.041  Score=45.95  Aligned_cols=37  Identities=22%  Similarity=0.257  Sum_probs=30.2

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHc------CCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKR------GISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~------G~~Vl~~d   42 (233)
                      ..+.++|+|. +|+||||++..++..+.+.      +..+..++
T Consensus        43 ~~~~vll~G~-~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~   85 (387)
T 2v1u_A           43 KPSNALLYGL-TGTGKTAVARLVLRRLEARASSLGVLVKPIYVN   85 (387)
T ss_dssp             CCCCEEECBC-TTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             CCCcEEEECC-CCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE
Confidence            3457888888 9999999999999999775      56666665

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=94.43  E-value=0.036  Score=43.80  Aligned_cols=26  Identities=15%  Similarity=0.216  Sum_probs=23.1

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      +..+|+|+|. .|+||||++..|+..+
T Consensus        24 ~g~iigI~G~-~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A           24 RPFLIGVSGG-TASGKSTVCEKIMELL   49 (245)
T ss_dssp             CSEEEEEECS-TTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECC-CCCCHHHHHHHHHHHh
Confidence            3568999999 9999999999999887

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=94.42  E-value=0.028  Score=42.75  Aligned_cols=25  Identities=24%  Similarity=0.355  Sum_probs=21.8

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      ..+++|+|. .|+||||++..|+..+
T Consensus         7 g~ii~l~Gp-~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            7 ANLFIISAP-SGAGKTSLVRALVKAL   31 (205)
T ss_dssp             CCEEEEECC-TTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECc-CCCCHHHHHHHHHhhC
Confidence            458999999 9999999999888765

>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*

Probab=94.41  E-value=0.048  Score=48.49  Aligned_cols=35  Identities=23%  Similarity=0.164  Sum_probs=31.3

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+++|.|||+   .|||||+.-|+..|.+.|+++.++-
T Consensus       145 ~~~vI~VTGT---nGKTTT~~ml~~iL~~~G~~~g~~g  179 (535)
T 2wtz_A          145 RLTVIGITGT---SGKTTTTYLVEAGLRAAGRVAGLIG  179 (535)
T ss_dssp             SSEEEEEESS---SCHHHHHHHHHHHHHHTTCCEEEES
T ss_pred             cceEEEeeCC---CChHHHHHHHHHHHHHCCCCEEEEC
Confidence            4689999988   6899999999999999999998763

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=94.40  E-value=0.021  Score=41.36  Aligned_cols=34  Identities=9%  Similarity=0.085  Sum_probs=27.7

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..+.+.|. +|+|||+++..++....+.+.... ++
T Consensus        25 ~~vll~G~-~GtGKt~lA~~i~~~~~~~~~~~v-~~   58 (145)
T 3n70_A           25 IAVWLYGA-PGTGRMTGARYLHQFGRNAQGEFV-YR   58 (145)
T ss_dssp             SCEEEESS-TTSSHHHHHHHHHHSSTTTTSCCE-EE
T ss_pred             CCEEEECC-CCCCHHHHHHHHHHhCCccCCCEE-EE
Confidence            35788888 999999999999887777677766 65

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=94.38  E-value=0.024  Score=46.88  Aligned_cols=25  Identities=32%  Similarity=0.283  Sum_probs=21.6

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      .+.|+|+|+ +|+||||++..||..+
T Consensus         3 ~~~i~i~Gp-tgsGKt~la~~La~~~   27 (322)
T 3exa_A            3 EKLVAIVGP-TAVGKTKTSVMLAKRL   27 (322)
T ss_dssp             CEEEEEECC-TTSCHHHHHHHHHHTT
T ss_pred             CcEEEEECC-CcCCHHHHHHHHHHhC
Confidence            357888888 9999999999998776

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=94.35  E-value=0.046  Score=54.79  Aligned_cols=35  Identities=20%  Similarity=0.337  Sum_probs=31.7

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..+.|++. +|+||||++.++|...+++|.+|++++
T Consensus       733 ~lVlI~G~-PG~GKTtLal~lA~~aa~~g~~VlyiS  767 (1706)
T 3cmw_A          733 RIVEIYGP-ESSGKTTLTLQVIAAAQREGKTCAFID  767 (1706)
T ss_dssp             SEEEEECS-TTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             ceEEEECC-CCCCcHHHHHHHHHHHHHcCCCeEEEe
Confidence            46777777 999999999999999999999999997

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=94.27  E-value=0.044  Score=42.38  Aligned_cols=36  Identities=19%  Similarity=0.038  Sum_probs=28.8

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHH------cCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKK------RGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~------~G~~Vl~~d   42 (233)
                      -.++.|.|. .|+||||++..|+..+..      .+.++++++
T Consensus        25 G~~~~l~G~-nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~   66 (231)
T 4a74_A           25 QAITEVFGE-FGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID   66 (231)
T ss_dssp             SEEEEEEES-TTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred             CcEEEEECC-CCCCHHHHHHHHHHHHhcccccCCCCCEEEEEE
Confidence            457889999 999999999999987654      245677776

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=94.27  E-value=0.034  Score=41.90  Aligned_cols=23  Identities=30%  Similarity=0.429  Sum_probs=19.7

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLS   29 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~   29 (233)
                      ..++.++|. .|+||||++..|+.
T Consensus         2 g~ii~l~G~-~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            2 KKLYIITGP-AGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEEECS-TTSSHHHHHHHHHH
T ss_pred             CeEEEEECC-CCCcHHHHHHHHhc
Confidence            357888888 99999999999975

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=94.26  E-value=0.044  Score=45.98  Aligned_cols=36  Identities=19%  Similarity=0.050  Sum_probs=29.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHc------CCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKR------GISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~------G~~Vl~~d   42 (233)
                      ..++.|.|. .|+||||++..|+...+..      |-+|++++
T Consensus       131 G~i~~I~G~-~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~  172 (349)
T 1pzn_A          131 QAITEVFGE-FGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID  172 (349)
T ss_dssp             SEEEEEEES-TTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEE
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHHHhccchhcCCCCCeEEEEe
Confidence            457889998 9999999999999987532      35888887

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=94.23  E-value=0.051  Score=41.94  Aligned_cols=27  Identities=26%  Similarity=0.363  Sum_probs=22.0

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      .++++|.|+|. +|+||+|+|--|...+
T Consensus         9 ~~~~II~itGk-~~SGKd~va~~l~~~~   35 (202)
T 3ch4_B            9 APRLVLLFSGK-RKSGKDFVTEALQSRL   35 (202)
T ss_dssp             CCSEEEEEEEC-TTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECC-CCCChHHHHHHHHHHc
Confidence            36778888877 9999999998776655

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=94.20  E-value=0.033  Score=42.21  Aligned_cols=29  Identities=21%  Similarity=0.319  Sum_probs=25.1

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ++|+|. .|+|||+.|..|+..    |.++.|+.
T Consensus         2 ilV~Gg-~~SGKS~~A~~la~~----~~~~~yia   30 (180)
T 1c9k_A            2 ILVTGG-ARSGKSRHAEALIGD----APQVLYIA   30 (180)
T ss_dssp             EEEEEC-TTSSHHHHHHHHHCS----CSSEEEEE
T ss_pred             EEEECC-CCCcHHHHHHHHHhc----CCCeEEEe
Confidence            788888 999999999998754    77899987

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=94.14  E-value=0.038  Score=44.19  Aligned_cols=25  Identities=16%  Similarity=0.259  Sum_probs=22.7

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      .++|+|+|. .|+||||++..|+..+
T Consensus        48 g~~i~l~G~-~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           48 GRSMYLVGM-MGSGKTTVGKIMARSL   72 (250)
T ss_dssp             TCCEEEECS-TTSCHHHHHHHHHHHH
T ss_pred             CCEEEEECC-CCCCHHHHHHHHHHhc
Confidence            468999999 9999999999999887

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=94.06  E-value=0.052  Score=49.02  Aligned_cols=36  Identities=22%  Similarity=0.206  Sum_probs=28.7

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHH----cCCeeeEEee
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKK----RGISCIGMKP   43 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~----~G~~Vl~~dp   43 (233)
                      +.+.|+|. +|+||||+...+...|.+    .|.+|++.=|
T Consensus       165 ~~~vi~G~-pGTGKTt~l~~ll~~l~~~~~~~~~~vll~AP  204 (608)
T 1w36_D          165 RISVISGG-PGTGKTTTVAKLLAALIQMADGERCRIRLAAP  204 (608)
T ss_dssp             SEEEEECC-TTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBS
T ss_pred             CCEEEEeC-CCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeC
Confidence            45666666 999999999999999984    4678888654

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=94.06  E-value=0.087  Score=42.27  Aligned_cols=36  Identities=17%  Similarity=0.292  Sum_probs=29.0

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHc-CCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKR-GISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~-G~~Vl~~d   42 (233)
                      ...++|+|. .|+||||+...|+..+... .-+|.+..
T Consensus        25 g~~v~i~Gp-~GsGKSTll~~l~g~~~~~~~G~I~~~g   61 (261)
T 2eyu_A           25 MGLILVTGP-TGSGKSTTIASMIDYINQTKSYHIITIE   61 (261)
T ss_dssp             SEEEEEECS-TTCSHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred             CCEEEEECC-CCccHHHHHHHHHHhCCCCCCCEEEEcC
Confidence            457899999 8999999999999998764 44676653

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=94.02  E-value=0.057  Score=42.12  Aligned_cols=31  Identities=23%  Similarity=0.285  Sum_probs=26.0

Q ss_pred             CCCCCceeEEEEeCCCCCcHHHHHHHHHHHHHH
Q psy14904          1 MINKNFLHYFITGTNTNIGKTIISCALLSEFKK   33 (233)
Q Consensus         1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~   33 (233)
                      ||.+ .+.|.+.|. .|+||||.+..|+..|..
T Consensus         1 ~m~~-g~~i~~eG~-~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            1 MMGR-GKLILIEGL-DRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCCC-CCEEEEEEC-SSSSHHHHHHHHHHHHCS
T ss_pred             CCCC-CeEEEEECC-CCCCHHHHHHHHHHHhcc
Confidence            5543 568888888 999999999999999965

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=93.95  E-value=0.048  Score=46.64  Aligned_cols=26  Identities=35%  Similarity=0.473  Sum_probs=22.8

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFK   32 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~   32 (233)
                      .++|+|+|+ +|+||||++..||..+.
T Consensus         2 ~~~i~i~Gp-tgsGKttla~~La~~~~   27 (409)
T 3eph_A            2 KKVIVIAGT-TGVGKSQLSIQLAQKFN   27 (409)
T ss_dssp             CEEEEEEEC-SSSSHHHHHHHHHHHHT
T ss_pred             CcEEEEECc-chhhHHHHHHHHHHHCC
Confidence            357889998 99999999999998873

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=93.90  E-value=0.044  Score=44.50  Aligned_cols=23  Identities=13%  Similarity=0.226  Sum_probs=19.7

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSE   30 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~   30 (233)
                      +.|.|+|. +|+||||++..|+..
T Consensus         3 ~~I~l~G~-~GsGKST~a~~L~~~   25 (301)
T 1ltq_A            3 KIILTIGC-PGSGKSTWAREFIAK   25 (301)
T ss_dssp             EEEEEECC-TTSSHHHHHHHHHHH
T ss_pred             eEEEEECC-CCCCHHHHHHHHHHh
Confidence            57888888 999999999888873

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=93.87  E-value=0.055  Score=41.22  Aligned_cols=27  Identities=33%  Similarity=0.559  Sum_probs=24.6

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcC
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRG   35 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G   35 (233)
                      +++|+|. .|+||||+...|+..+...|
T Consensus         3 ~i~i~G~-nG~GKTTll~~l~g~~~~~G   29 (189)
T 2i3b_A            3 HVFLTGP-PGVGKTTLIHKASEVLKSSG   29 (189)
T ss_dssp             CEEEESC-CSSCHHHHHHHHHHHHHHTT
T ss_pred             EEEEECC-CCChHHHHHHHHHhhcccCC
Confidence            6889998 99999999999999998777

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=93.86  E-value=0.038  Score=44.10  Aligned_cols=35  Identities=20%  Similarity=0.213  Sum_probs=29.4

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..+.|+|. +|+|||+++..++..+.+.+.++..++
T Consensus        30 ~~vll~G~-~GtGKt~la~~i~~~~~~~~~~~~~v~   64 (265)
T 2bjv_A           30 KPVLIIGE-RGTGKELIASRLHYLSSRWQGPFISLN   64 (265)
T ss_dssp             SCEEEECC-TTSCHHHHHHHHHHTSTTTTSCEEEEE
T ss_pred             CCEEEECC-CCCcHHHHHHHHHHhcCccCCCeEEEe
Confidence            46888888 999999999999988877777777776

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=93.83  E-value=0.05  Score=42.12  Aligned_cols=23  Identities=22%  Similarity=0.163  Sum_probs=20.1

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      +|++.|+ +|+||+|.|..|+..+
T Consensus         2 ~Iil~Gp-PGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            2 ILVFLGP-PGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             EEEEECS-TTSSHHHHHHHHHHHH
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHH
Confidence            4778888 9999999999999876

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=93.83  E-value=0.091  Score=41.48  Aligned_cols=33  Identities=21%  Similarity=0.315  Sum_probs=26.4

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.+.+.|. +|+|||+++..++..+   +.++..++
T Consensus        39 ~~~vll~G~-~GtGKT~la~~la~~~---~~~~~~~~   71 (262)
T 2qz4_A           39 PKGALLLGP-PGCGKTLLAKAVATEA---QVPFLAMA   71 (262)
T ss_dssp             CCEEEEESC-TTSSHHHHHHHHHHHH---TCCEEEEE
T ss_pred             CceEEEECC-CCCCHHHHHHHHHHHh---CCCEEEec
Confidence            456888888 9999999999999876   55666655

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A

Probab=93.81  E-value=0.065  Score=48.54  Aligned_cols=34  Identities=18%  Similarity=0.274  Sum_probs=29.0

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHH-cCCeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKK-RGISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~-~G~~Vl~~d   42 (233)
                      ...|.|+ +|+|||++...++..+.+ .+.+|+++=
T Consensus       197 ~~li~Gp-pGTGKT~~~~~~i~~l~~~~~~~ilv~a  231 (624)
T 2gk6_A          197 LSLIQGP-PGTGKTVTSATIVYHLARQGNGPVLVCA  231 (624)
T ss_dssp             EEEEECC-TTSCHHHHHHHHHHHHHTSSSCCEEEEE
T ss_pred             CeEEECC-CCCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence            5567777 999999999999999887 788999875

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=93.75  E-value=0.048  Score=45.00  Aligned_cols=25  Identities=28%  Similarity=0.327  Sum_probs=21.2

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      .+.|+|+|+ +|+||||++..||..+
T Consensus        10 ~~~i~i~Gp-tgsGKt~la~~La~~~   34 (316)
T 3foz_A           10 PKAIFLMGP-TASGKTALAIELRKIL   34 (316)
T ss_dssp             CEEEEEECC-TTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECC-CccCHHHHHHHHHHhC
Confidence            357778888 9999999999998875

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=93.73  E-value=0.074  Score=47.09  Aligned_cols=36  Identities=19%  Similarity=0.160  Sum_probs=31.7

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      -.++.|+|. .|+||||++..++..+...|.+++++.
T Consensus       281 G~i~~i~G~-~GsGKSTLl~~l~g~~~~~G~~vi~~~  316 (525)
T 1tf7_A          281 DSIILATGA-TGTGKTLLVSRFVENACANKERAILFA  316 (525)
T ss_dssp             SCEEEEEEC-TTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CcEEEEEeC-CCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence            347888888 999999999999999988898888876

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=93.72  E-value=0.059  Score=42.28  Aligned_cols=26  Identities=19%  Similarity=0.420  Sum_probs=22.4

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      +..+|+|+|. .|+||||++..|+..|
T Consensus        15 ~~~~i~i~G~-~gsGKst~~~~l~~~l   40 (236)
T 1q3t_A           15 KTIQIAIDGP-ASSGKSTVAKIIAKDF   40 (236)
T ss_dssp             CCCEEEEECS-SCSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECC-CCCCHHHHHHHHHHHc
Confidence            3568999998 9999999999888766

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=93.67  E-value=0.088  Score=42.60  Aligned_cols=33  Identities=24%  Similarity=0.262  Sum_probs=27.1

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.+.++|. +|+|||+++..++..+   +.++..++
T Consensus        50 ~~~vll~G~-~GtGKT~la~~la~~l---~~~~~~i~   82 (310)
T 1ofh_A           50 PKNILMIGP-TGVGKTEIARRLAKLA---NAPFIKVE   82 (310)
T ss_dssp             CCCEEEECC-TTSSHHHHHHHHHHHH---TCCEEEEE
T ss_pred             CceEEEECC-CCCCHHHHHHHHHHHh---CCCEEEEc
Confidence            356888888 9999999999999988   55666665

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=93.66  E-value=0.044  Score=42.52  Aligned_cols=24  Identities=17%  Similarity=0.289  Sum_probs=21.7

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      +.+.+.|+ +|+||||+|..||..+
T Consensus        59 n~ili~GP-PGtGKTt~a~ala~~l   82 (212)
T 1tue_A           59 NCLVFCGP-ANTGKSYFGMSFIHFI   82 (212)
T ss_dssp             SEEEEESC-GGGCHHHHHHHHHHHH
T ss_pred             cEEEEECC-CCCCHHHHHHHHHHHh
Confidence            36888888 9999999999999988

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=93.64  E-value=0.1  Score=44.07  Aligned_cols=37  Identities=16%  Similarity=0.292  Sum_probs=30.2

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHc-CCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKR-GISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~-G~~Vl~~d   42 (233)
                      +...++|+|. .|+||||+...|+..+... ..+|..++
T Consensus       135 ~g~~i~ivG~-~GsGKTTll~~l~~~~~~~~~g~I~~~e  172 (372)
T 2ewv_A          135 KMGLILVTGP-TGSGKSTTIASMIDYINQTKSYHIITIE  172 (372)
T ss_dssp             SSEEEEEECS-SSSSHHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred             CCCEEEEECC-CCCCHHHHHHHHHhhcCcCCCcEEEEec
Confidence            3457899998 8999999999999999875 45776664

>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A

Probab=93.62  E-value=0.076  Score=43.91  Aligned_cols=35  Identities=14%  Similarity=-0.006  Sum_probs=28.7

Q ss_pred             CceeEEEEe-CCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904          5 NFLHYFITG-TNTNIGKTIISCALLSEFKKRGISCIGM   41 (233)
Q Consensus         5 ~~~~i~i~~-~kggvGKTt~a~~La~~l~~~G~~Vl~~   41 (233)
                      +.++|.|-| +=||+|||-++.-|+..|+.  +++.++
T Consensus        35 ~vPVI~VGNitvGGTGKTP~vi~L~~~L~~--~~~~il   70 (315)
T 4ehx_A           35 PVPVISVGNLSVGGSGKTSFVMYLADLLKD--KRVCIL   70 (315)
T ss_dssp             SSCEEEEEESBSSCCSHHHHHHHHHHHTTT--SCEEEE
T ss_pred             CCCEEEECCEEeCCCChHHHHHHHHHHHhh--cCceEE
Confidence            467899998 66999999999999999954  456655

>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1

Probab=93.60  E-value=0.078  Score=46.27  Aligned_cols=33  Identities=24%  Similarity=0.166  Sum_probs=29.1

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGM   41 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~   41 (233)
                      .++|.|||+   -|||||+.-|+..|.+.|+++.++
T Consensus       114 ~~vI~VTGT---nGKTTTt~ml~~iL~~~G~~~~~~  146 (469)
T 1j6u_A          114 KEEFAVTGT---DGKTTTTAMVAHVLKHLRKSPTVF  146 (469)
T ss_dssp             CCEEEEECS---SSHHHHHHHHHHHHHHTTCCCEEE
T ss_pred             CCEEEEECC---CCHHHHHHHHHHHHHHcCCCceEE
Confidence            579999998   589999999999999999988543

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=93.44  E-value=0.059  Score=41.18  Aligned_cols=26  Identities=19%  Similarity=0.284  Sum_probs=22.0

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFK   32 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~   32 (233)
                      .+.++|+|+ .|+||||+...|+..+.
T Consensus         4 g~~i~lvGp-sGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            4 PRPVVLSGP-SGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             -CCEEEECC-TTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEECC-CCCCHHHHHHHHHhhCc
Confidence            467899999 99999999999988764

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=93.34  E-value=0.072  Score=40.11  Aligned_cols=24  Identities=25%  Similarity=0.472  Sum_probs=21.3

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFK   32 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~   32 (233)
                      .++|+|. .|+||||+...|+..+.
T Consensus         2 ~i~l~G~-nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            2 KIIITGE-PGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEEECC-TTSSHHHHHHHHHHHHG
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHhC
Confidence            5788888 99999999999999884

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=93.31  E-value=0.099  Score=39.40  Aligned_cols=30  Identities=40%  Similarity=0.568  Sum_probs=23.6

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG   40 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~   40 (233)
                      .+-+.++|. +|+||||+|..|..    +|++.+.
T Consensus        16 G~gvli~G~-SGaGKStlal~L~~----rG~~lva   45 (181)
T 3tqf_A           16 KMGVLITGE-ANIGKSELSLALID----RGHQLVC   45 (181)
T ss_dssp             TEEEEEEES-SSSSHHHHHHHHHH----TTCEEEE
T ss_pred             CEEEEEEcC-CCCCHHHHHHHHHH----cCCeEec
Confidence            456888998 99999999987765    7876543

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=93.22  E-value=0.11  Score=44.86  Aligned_cols=33  Identities=21%  Similarity=0.103  Sum_probs=29.8

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGM   41 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~   41 (233)
                      .++|.|||+   -|||||+.-|+..|.+.|+++...
T Consensus       104 ~~vI~VTGT---nGKTTT~~ml~~iL~~~g~~~~~~  136 (439)
T 2x5o_A          104 APIVAITGS---NGKSTVTTLVGEMAKAAGVNVGVG  136 (439)
T ss_dssp             SCEEEEECS---SSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEECC---CCHHHHHHHHHHHHHhcCCCEEEe
Confidence            579999988   689999999999999999998865

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=93.21  E-value=0.096  Score=46.40  Aligned_cols=33  Identities=24%  Similarity=0.117  Sum_probs=29.1

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG   40 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~   40 (233)
                      ..++|+|||+   -|||||+.-++..|.+.|+++.+
T Consensus       121 ~~~vIaVTGT---nGKTTTt~li~~iL~~~G~~~~~  153 (524)
T 3hn7_A          121 SRHVIAVAGT---HGKTTTTTMLAWILHYAGIDAGF  153 (524)
T ss_dssp             GSEEEEEECS---SCHHHHHHHHHHHHHHTTCCCEE
T ss_pred             cCcEEEEECC---CCHHHHHHHHHHHHHHcCCCceE
Confidence            3578999988   58999999999999999998764

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=93.19  E-value=0.1  Score=43.16  Aligned_cols=29  Identities=14%  Similarity=0.208  Sum_probs=25.3

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHc
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKR   34 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~   34 (233)
                      ..+.++|+|+ +|+|||+++..++..|.+.
T Consensus        44 ~~~~lli~Gp-PGTGKT~~v~~v~~~L~~~   72 (318)
T 3te6_A           44 QNKLFYITNA-DDSTKFQLVNDVMDELITS   72 (318)
T ss_dssp             CCCEEEEECC-CSHHHHHHHHHHHHHHHHT
T ss_pred             CCCeEEEECC-CCCCHHHHHHHHHHHHHHH
Confidence            4567889988 9999999999999999764

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=93.18  E-value=0.064  Score=47.72  Aligned_cols=24  Identities=29%  Similarity=0.567  Sum_probs=21.2

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHH
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLS   29 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~   29 (233)
                      ..++|.|+|. ||+||||+|..++.
T Consensus       151 ~~~vv~I~G~-gGvGKTtLA~~v~~  174 (549)
T 2a5y_B          151 DSFFLFLHGR-AGSGKSVIASQALS  174 (549)
T ss_dssp             SSEEEEEECS-TTSSHHHHHHHHHH
T ss_pred             CceEEEEEcC-CCCCHHHHHHHHHH
Confidence            4678999999 99999999998885

>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A

Probab=93.17  E-value=0.094  Score=48.94  Aligned_cols=35  Identities=17%  Similarity=0.244  Sum_probs=29.2

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHH-cCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKK-RGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~-~G~~Vl~~d   42 (233)
                      +...|.|. +|+|||++...++..|.+ .+.+|+++=
T Consensus       372 ~~~lI~Gp-pGTGKT~ti~~~i~~l~~~~~~~ilv~a  407 (800)
T 2wjy_A          372 PLSLIQGP-PGTGKTVTSATIVYHLARQGNGPVLVCA  407 (800)
T ss_dssp             SEEEEECC-TTSCHHHHHHHHHHHHHTTCSSCEEEEE
T ss_pred             CeEEEEcC-CCCCHHHHHHHHHHHHHHcCCCcEEEEc
Confidence            35567776 999999999999999987 688998875

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=93.14  E-value=0.12  Score=43.43  Aligned_cols=36  Identities=19%  Similarity=0.202  Sum_probs=29.4

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHc-CCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKR-GISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~-G~~Vl~~d   42 (233)
                      ...+.|+|. .|+||||+...|+..+... |.++..+.
T Consensus       123 ~g~i~I~Gp-tGSGKTTlL~~l~g~~~~~~~~~i~t~e  159 (356)
T 3jvv_A          123 RGLVLVTGP-TGSGKSTTLAAMLDYLNNTKYHHILTIE  159 (356)
T ss_dssp             SEEEEEECS-TTSCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred             CCEEEEECC-CCCCHHHHHHHHHhcccCCCCcEEEEcc
Confidence            347888888 9999999999999999875 66776553

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=93.13  E-value=0.065  Score=42.13  Aligned_cols=26  Identities=19%  Similarity=0.244  Sum_probs=22.6

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFK   32 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~   32 (233)
                      .+.|+|.|. .|+||||++..|+..|.
T Consensus         2 ~~~i~~~G~-~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            2 PRRLSIEGN-IAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CEEEEEEEC-TTSSHHHHHHHHHHHCT
T ss_pred             CeEEEEEcC-CCCCHHHHHHHHHHHcC
Confidence            357889988 99999999999998874

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=93.13  E-value=0.021  Score=45.75  Aligned_cols=27  Identities=19%  Similarity=0.167  Sum_probs=23.3

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFK   32 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~   32 (233)
                      +++.|+|.|. .|+||||++..|+..|.
T Consensus        23 ~~~~I~ieG~-~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B           23 RIKKISIEGN-IAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             CCEEEEEECS-TTSSHHHHHTTTGGGCT
T ss_pred             CceEEEEECC-CCCCHHHHHHHHHHhcC
Confidence            4678899998 99999999999988773

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=93.09  E-value=0.072  Score=40.95  Aligned_cols=25  Identities=28%  Similarity=0.414  Sum_probs=20.8

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      .+.|+|+|+ .|+||||+...|+..+
T Consensus        19 g~~ivl~GP-SGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           19 RKTLVLIGA-SGVGRSHIKNALLSQN   43 (197)
T ss_dssp             CCEEEEECC-TTSSHHHHHHHHHHHC
T ss_pred             CCEEEEECc-CCCCHHHHHHHHHhhC
Confidence            467888888 9999999998888654

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=93.09  E-value=0.071  Score=40.98  Aligned_cols=28  Identities=14%  Similarity=0.199  Sum_probs=24.0

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISC   38 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~V   38 (233)
                      .+|+|++. .|+||||++..||..|   |++.
T Consensus         7 ~iI~i~g~-~GsGk~ti~~~la~~l---g~~~   34 (201)
T 3fdi_A            7 IIIAIGRE-FGSGGHLVAKKLAEHY---NIPL   34 (201)
T ss_dssp             CEEEEEEC-TTSSHHHHHHHHHHHT---TCCE
T ss_pred             eEEEEeCC-CCCCHHHHHHHHHHHh---CcCE
Confidence            48999998 9999999999999888   5553

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=93.09  E-value=0.14  Score=44.54  Aligned_cols=35  Identities=23%  Similarity=0.208  Sum_probs=29.0

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..|.++|. +|+||||++..|+..+...+.++-.+.
T Consensus        40 ~~IvlvGl-pGsGKSTia~~La~~l~~~~~~t~~~~   74 (469)
T 1bif_A           40 TLIVMVGL-PARGKTYISKKLTRYLNFIGVPTREFN   74 (469)
T ss_dssp             EEEEEECC-TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEEECC-CCCCHHHHHHHHHHHHhccCCCceEEe
Confidence            36777887 999999999999999987777766554

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=93.08  E-value=0.076  Score=40.81  Aligned_cols=28  Identities=29%  Similarity=0.425  Sum_probs=23.4

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcC
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRG   35 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G   35 (233)
                      +.+.|+|. +|+||||++..++..+...+
T Consensus        46 ~~~ll~G~-~G~GKT~l~~~~~~~~~~~~   73 (250)
T 1njg_A           46 HAYLFSGT-RGVGKTSIARLLAKGLNCET   73 (250)
T ss_dssp             SEEEEECS-TTSCHHHHHHHHHHHHHCTT
T ss_pred             eEEEEECC-CCCCHHHHHHHHHHHhcCCC
Confidence            36788888 99999999999998887543

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=93.04  E-value=0.11  Score=44.93  Aligned_cols=32  Identities=22%  Similarity=0.140  Sum_probs=28.3

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG   40 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~   40 (233)
                      .++|+|||+   -|||||+.-|++.|.+.|+++.+
T Consensus       112 ~~~IaVTGT---nGKTTTt~ml~~iL~~~g~~~~~  143 (451)
T 3lk7_A          112 SQLIGITGS---NGKTTTTTMIAEVLNAGGQRGLL  143 (451)
T ss_dssp             SEEEEEECS---SCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCEEEEECC---CCHHHHHHHHHHHHHhcCCCEEE
Confidence            479999998   56999999999999999998854

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=92.95  E-value=0.093  Score=46.82  Aligned_cols=36  Identities=22%  Similarity=0.317  Sum_probs=30.1

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcC-CeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRG-ISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G-~~Vl~~d   42 (233)
                      ..+|+++|. .|+||||++..|+..+...+ .++.++|
T Consensus       369 G~iI~LiG~-sGSGKSTLar~La~~L~~~~G~~i~~lD  405 (552)
T 3cr8_A          369 GFTVFFTGL-SGAGKSTLARALAARLMEMGGRCVTLLD  405 (552)
T ss_dssp             CEEEEEEES-SCHHHHHHHHHHHHHHHTTCSSCEEEES
T ss_pred             ceEEEEECC-CCChHHHHHHHHHHhhcccCCceEEEEC
Confidence            458999999 99999999999999997654 5676666

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=92.95  E-value=0.12  Score=42.60  Aligned_cols=35  Identities=14%  Similarity=0.275  Sum_probs=27.3

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.+.+.+.|. +|+|||+++..+|..+  .+..+..++
T Consensus        44 ~~~~iLL~Gp-pGtGKT~la~ala~~~--~~~~~~~i~   78 (322)
T 1xwi_A           44 PWRGILLFGP-PGTGKSYLAKAVATEA--NNSTFFSIS   78 (322)
T ss_dssp             CCSEEEEESS-SSSCHHHHHHHHHHHT--TSCEEEEEE
T ss_pred             CCceEEEECC-CCccHHHHHHHHHHHc--CCCcEEEEE
Confidence            3467899998 9999999999999876  355555555

>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*

Probab=92.93  E-value=0.2  Score=40.13  Aligned_cols=39  Identities=26%  Similarity=0.422  Sum_probs=35.2

Q ss_pred             CCceeEEEEe-CCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          4 KNFLHYFITG-TNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         4 ~~~~~i~i~~-~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ++||-|+||| -=+|.||=.+|+.|+..|+.+|++|..+|
T Consensus        21 ~~~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt~~K   60 (295)
T 2vo1_A           21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIK   60 (295)
T ss_dssp             CCCEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             ccceEEEEcCCcccccccHHHHHHHHHHHHHCCCcceeee
Confidence            3579999998 45899999999999999999999999976

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=92.93  E-value=0.1  Score=44.05  Aligned_cols=36  Identities=14%  Similarity=0.172  Sum_probs=28.5

Q ss_pred             ceeEEE--EeCCCCCcHHHHHHHHHHHHHHc------CCeeeEEe
Q psy14904          6 FLHYFI--TGTNTNIGKTIISCALLSEFKKR------GISCIGMK   42 (233)
Q Consensus         6 ~~~i~i--~~~kggvGKTt~a~~La~~l~~~------G~~Vl~~d   42 (233)
                      ...++|  +|. +|+||||++..++..+..+      +..+.+++
T Consensus        50 ~~~~li~i~G~-~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~   93 (412)
T 1w5s_A           50 DVNMIYGSIGR-VGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN   93 (412)
T ss_dssp             CEEEEEECTTC-CSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             CCEEEEeCcCc-CCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence            345666  777 9999999999999988764      66777765

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=92.91  E-value=0.1  Score=46.00  Aligned_cols=33  Identities=24%  Similarity=0.390  Sum_probs=28.3

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.+.++|. +|+||||++..+|..+   |..+..++
T Consensus        77 ~~~lLL~Gp-pGtGKTtla~~la~~l---~~~~i~in  109 (516)
T 1sxj_A           77 FRAAMLYGP-PGIGKTTAAHLVAQEL---GYDILEQN  109 (516)
T ss_dssp             CSEEEEECS-TTSSHHHHHHHHHHHT---TCEEEEEC
T ss_pred             CcEEEEECC-CCCCHHHHHHHHHHHc---CCCEEEEe
Confidence            467888888 9999999999999887   77887775

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=92.89  E-value=0.12  Score=43.51  Aligned_cols=33  Identities=21%  Similarity=0.269  Sum_probs=26.8

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ...+.+.|. +|+|||+++..||..+   |.++..++
T Consensus        72 ~~~ill~Gp-~GtGKT~la~~la~~l---~~~~~~~~  104 (376)
T 1um8_A           72 KSNILLIGP-TGSGKTLMAQTLAKHL---DIPIAISD  104 (376)
T ss_dssp             CCCEEEECC-TTSSHHHHHHHHHHHT---TCCEEEEE
T ss_pred             CCCEEEECC-CCCCHHHHHHHHHHHh---CCCEEEec
Confidence            346888998 9999999999999877   56666665

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=92.87  E-value=0.069  Score=41.19  Aligned_cols=32  Identities=31%  Similarity=0.425  Sum_probs=23.3

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.|+|+|. +|+||||++..|+    ++|.++.--|
T Consensus        34 g~~ilI~Gp-sGsGKStLA~~La----~~g~~iIsdD   65 (205)
T 2qmh_A           34 GLGVLITGD-SGVGKSETALELV----QRGHRLIADD   65 (205)
T ss_dssp             TEEEEEECC-CTTTTHHHHHHHH----TTTCEEEESS
T ss_pred             CEEEEEECC-CCCCHHHHHHHHH----HhCCeEEecc
Confidence            457889998 9999999887665    5566554433

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=92.77  E-value=0.1  Score=41.73  Aligned_cols=34  Identities=18%  Similarity=0.337  Sum_probs=26.6

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..+.+.++|. +|+|||+++..++..+   |.+...++
T Consensus        63 ~~~~vLl~G~-~GtGKT~la~~ia~~~---~~~~~~i~   96 (272)
T 1d2n_A           63 PLVSVLLEGP-PHSGKTALAAKIAEES---NFPFIKIC   96 (272)
T ss_dssp             SEEEEEEECS-TTSSHHHHHHHHHHHH---TCSEEEEE
T ss_pred             CCeEEEEECC-CCCcHHHHHHHHHHHh---CCCEEEEe
Confidence            3567888888 9999999999999874   55655554

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=92.70  E-value=0.073  Score=40.99  Aligned_cols=24  Identities=25%  Similarity=0.429  Sum_probs=20.5

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      .+|+|+|. .|+||||++..|+..+
T Consensus         4 ~~i~i~G~-~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            4 INIALDGP-AAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CCEEEECC-TTSSHHHHHHHHHHHT
T ss_pred             eEEEEECC-CCCCHHHHHHHHHHhc
Confidence            36889998 9999999998887765

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=92.66  E-value=0.048  Score=42.58  Aligned_cols=26  Identities=19%  Similarity=0.234  Sum_probs=16.3

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHH-HHH
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALL-SEF   31 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La-~~l   31 (233)
                      +.++++|+|+ .|+||||++..|+ ..+
T Consensus        26 ~G~ii~l~Gp-~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           26 VGVILVLSSP-SGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CCCEEEEECS-CC----CHHHHHHC---
T ss_pred             CCCEEEEECC-CCCCHHHHHHHHHhcCC
Confidence            3468999999 9999999999888 665

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=92.54  E-value=0.085  Score=42.36  Aligned_cols=33  Identities=21%  Similarity=0.272  Sum_probs=26.0

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.+.+.|. +|+|||+++..+|..+   +.++..+.
T Consensus        51 ~~~~ll~G~-~GtGKT~la~~la~~~---~~~~~~v~   83 (285)
T 3h4m_A           51 PKGILLYGP-PGTGKTLLAKAVATET---NATFIRVV   83 (285)
T ss_dssp             CSEEEEESS-SSSSHHHHHHHHHHHT---TCEEEEEE
T ss_pred             CCeEEEECC-CCCcHHHHHHHHHHHh---CCCEEEEe
Confidence            456888988 9999999999988765   55665554

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=92.54  E-value=0.11  Score=41.01  Aligned_cols=33  Identities=18%  Similarity=0.291  Sum_probs=25.8

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.+.+.|. +|+||||++..++..+   +..+..++
T Consensus        45 ~~~vll~G~-~GtGKT~la~~la~~~---~~~~~~i~   77 (257)
T 1lv7_A           45 PKGVLMVGP-PGTGKTLLAKAIAGEA---KVPFFTIS   77 (257)
T ss_dssp             CCEEEEECC-TTSCHHHHHHHHHHHH---TCCEEEEC
T ss_pred             CCeEEEECc-CCCCHHHHHHHHHHHc---CCCEEEEe
Confidence            346889998 9999999999999876   44555554

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=92.29  E-value=0.18  Score=46.69  Aligned_cols=34  Identities=26%  Similarity=0.347  Sum_probs=30.8

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.+.|. +|+|||+++..|+..+...+.....++
T Consensus       523 ~~Ll~Gp-~GtGKT~lA~ala~~l~~~~~~~i~i~  556 (758)
T 3pxi_A          523 SFIFLGP-TGVGKTELARALAESIFGDEESMIRID  556 (758)
T ss_dssp             EEEEESC-TTSSHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHhcCCCcceEEEe
Confidence            6889998 999999999999999988888888887

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=92.27  E-value=0.12  Score=37.13  Aligned_cols=22  Identities=32%  Similarity=0.483  Sum_probs=18.3

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La   28 (233)
                      |+.|++.|. +|+||||+...|.
T Consensus         1 ~~ki~v~G~-~~~GKSsli~~l~   22 (161)
T 2dyk_A            1 MHKVVIVGR-PNVGKSSLFNRLL   22 (161)
T ss_dssp             CEEEEEECC-TTSSHHHHHHHHH
T ss_pred             CCEEEEECC-CCCCHHHHHHHHh
Confidence            456889997 8999999987766

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=92.14  E-value=0.12  Score=45.15  Aligned_cols=26  Identities=23%  Similarity=0.335  Sum_probs=22.9

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKK   33 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~   33 (233)
                      ..+.+.|. +|+|||+++..||..+.+
T Consensus       202 ~~~LL~G~-pG~GKT~la~~la~~l~~  227 (468)
T 3pxg_A          202 NNPVLIGE-PGVGKTAIAEGLAQQIIN  227 (468)
T ss_dssp             CEEEEESC-TTTTTHHHHHHHHHHHHS
T ss_pred             CCeEEECC-CCCCHHHHHHHHHHHHHh
Confidence            46778888 999999999999999976

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=92.05  E-value=0.15  Score=42.59  Aligned_cols=33  Identities=18%  Similarity=0.244  Sum_probs=26.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.+.+.|. +|+|||++|..||..+   |.+...++
T Consensus        51 ~~~vll~Gp-pGtGKT~la~~ia~~~---~~~~~~~~   83 (363)
T 3hws_A           51 KSNILLIGP-TGSGKTLLAETLARLL---DVPFTMAD   83 (363)
T ss_dssp             CCCEEEECC-TTSSHHHHHHHHHHHT---TCCEEEEE
T ss_pred             CCeEEEECC-CCCCHHHHHHHHHHHc---CCCEEEec
Confidence            356888998 9999999999999887   55555554

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=92.04  E-value=0.11  Score=39.50  Aligned_cols=24  Identities=25%  Similarity=0.468  Sum_probs=18.9

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      +.|.|+|+ +|+||||++..|...+
T Consensus         2 RpIVi~GP-SG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            2 RPIVISGP-SGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CCEEEECC-TTSSHHHHHHHHHHHC
T ss_pred             CEEEEECC-CCCCHHHHHHHHHHhC
Confidence            45788888 9999999987775544

>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=92.03  E-value=0.16  Score=47.39  Aligned_cols=34  Identities=21%  Similarity=0.275  Sum_probs=28.5

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHH-cCCeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKK-RGISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~-~G~~Vl~~d   42 (233)
                      ...|.|. +|+|||++...++..|.+ .+.+|+++=
T Consensus       377 ~~lI~Gp-pGTGKT~~i~~~i~~l~~~~~~~ILv~a  411 (802)
T 2xzl_A          377 LSLIQGP-PGTGKTVTSATIVYHLSKIHKDRILVCA  411 (802)
T ss_dssp             EEEEECS-TTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             CEEEECC-CCCCHHHHHHHHHHHHHhCCCCeEEEEc
Confidence            4566666 999999999999988876 688999975

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=91.98  E-value=0.11  Score=42.03  Aligned_cols=33  Identities=18%  Similarity=0.319  Sum_probs=25.8

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.+.+.|. +|+||||++..++..+   +.....+.
T Consensus        54 ~~~vll~Gp-~GtGKT~la~~la~~~---~~~~~~i~   86 (297)
T 3b9p_A           54 AKGLLLFGP-PGNGKTLLARAVATEC---SATFLNIS   86 (297)
T ss_dssp             CSEEEEESS-SSSCHHHHHHHHHHHT---TCEEEEEE
T ss_pred             CCeEEEECc-CCCCHHHHHHHHHHHh---CCCeEEee
Confidence            467889998 9999999999998866   44554444

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=91.98  E-value=0.21  Score=41.85  Aligned_cols=33  Identities=15%  Similarity=0.234  Sum_probs=26.4

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.+.+.|. +|+|||+++..+|..+   +..+..++
T Consensus        84 ~~~iLL~Gp-pGtGKT~la~ala~~~---~~~~~~v~  116 (355)
T 2qp9_X           84 TSGILLYGP-PGTGKSYLAKAVATEA---NSTFFSVS  116 (355)
T ss_dssp             CCCEEEECS-TTSCHHHHHHHHHHHH---TCEEEEEE
T ss_pred             CceEEEECC-CCCcHHHHHHHHHHHh---CCCEEEee
Confidence            356888888 9999999999999887   55665555

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=91.96  E-value=0.17  Score=43.56  Aligned_cols=37  Identities=22%  Similarity=0.220  Sum_probs=29.9

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +...+.|+|. .|+||||+...|+..+.....+|..+.
T Consensus       166 ~ggii~I~Gp-nGSGKTTlL~allg~l~~~~g~I~~~e  202 (418)
T 1p9r_A          166 PHGIILVTGP-TGSGKSTTLYAGLQELNSSERNILTVE  202 (418)
T ss_dssp             SSEEEEEECS-TTSCHHHHHHHHHHHHCCTTSCEEEEE
T ss_pred             cCCeEEEECC-CCCCHHHHHHHHHhhcCCCCCEEEEec
Confidence            3457889998 999999999999998876655777664

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=91.96  E-value=0.12  Score=42.96  Aligned_cols=25  Identities=24%  Similarity=0.373  Sum_probs=22.7

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFK   32 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~   32 (233)
                      +.+.++|. +|+|||+++..++..+.
T Consensus        71 ~~vLl~Gp-pGtGKT~la~~la~~l~   95 (368)
T 3uk6_A           71 RAVLIAGQ-PGTGKTAIAMGMAQALG   95 (368)
T ss_dssp             CEEEEEES-TTSSHHHHHHHHHHHHC
T ss_pred             CEEEEECC-CCCCHHHHHHHHHHHhc
Confidence            57899999 99999999999999985

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=91.86  E-value=0.083  Score=45.37  Aligned_cols=26  Identities=19%  Similarity=0.054  Sum_probs=21.0

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      +.+.|.++|. +|+||||++..|+..+
T Consensus       257 ~~~lIil~G~-pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          257 NPEVVVAVGF-PGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             SCCEEEEESC-TTSSHHHHHHHHTGGG
T ss_pred             CCEEEEEECC-CCCCHHHHHHHHHHhc
Confidence            3567888888 9999999998887644

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=91.84  E-value=0.15  Score=41.99  Aligned_cols=33  Identities=15%  Similarity=0.234  Sum_probs=26.6

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.+.+.|. +|+|||+++..+|..+   +.++..++
T Consensus        51 ~~~vLl~Gp-pGtGKT~la~aia~~~---~~~~~~v~   83 (322)
T 3eie_A           51 TSGILLYGP-PGTGKSYLAKAVATEA---NSTFFSVS   83 (322)
T ss_dssp             CCEEEEECS-SSSCHHHHHHHHHHHH---TCEEEEEE
T ss_pred             CCeEEEECC-CCCcHHHHHHHHHHHH---CCCEEEEc
Confidence            457899998 9999999999998875   55666655

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=91.78  E-value=0.12  Score=42.17  Aligned_cols=33  Identities=24%  Similarity=0.326  Sum_probs=25.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.+.+.|. +|+|||+++..+|..+   +.....++
T Consensus        49 ~~~vLL~Gp-~GtGKT~la~ala~~~---~~~~i~v~   81 (301)
T 3cf0_A           49 SKGVLFYGP-PGCGKTLLAKAIANEC---QANFISIK   81 (301)
T ss_dssp             CSEEEEECS-SSSSHHHHHHHHHHHT---TCEEEEEC
T ss_pred             CceEEEECC-CCcCHHHHHHHHHHHh---CCCEEEEE
Confidence            457888988 9999999999999866   44554444

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=91.78  E-value=0.14  Score=42.50  Aligned_cols=24  Identities=29%  Similarity=0.545  Sum_probs=21.6

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      ..+.+.|+ +|+||||++..+|..+
T Consensus        52 ~~~ll~Gp-~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           52 DHVLLAGP-PGLGKTTLAHIIASEL   75 (334)
T ss_dssp             CCEEEESS-TTSSHHHHHHHHHHHH
T ss_pred             CeEEEECC-CCCcHHHHHHHHHHHh
Confidence            56888888 9999999999999887

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=91.76  E-value=0.12  Score=39.60  Aligned_cols=26  Identities=15%  Similarity=0.243  Sum_probs=22.6

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFK   32 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~   32 (233)
                      -.+++|.|. .|+||||+...|+..+.
T Consensus        20 Gei~~l~Gp-nGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           20 GRVVVLSGP-SAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             CCEEEEECS-TTSSHHHHHHHHHHHST
T ss_pred             CCEEEEECC-CCCCHHHHHHHHHhhCC
Confidence            468899999 99999999999988773

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=91.74  E-value=0.2  Score=41.88  Aligned_cols=34  Identities=21%  Similarity=0.302  Sum_probs=27.2

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..+.+.+.|. +|+|||+++..+|..+   +..+..++
T Consensus       116 ~~~~vLl~Gp-pGtGKT~la~aia~~~---~~~~~~i~  149 (357)
T 3d8b_A          116 PPKGILLFGP-PGTGKTLIGKCIASQS---GATFFSIS  149 (357)
T ss_dssp             CCSEEEEESS-TTSSHHHHHHHHHHHT---TCEEEEEE
T ss_pred             CCceEEEECC-CCCCHHHHHHHHHHHc---CCeEEEEe
Confidence            3567889988 9999999999998765   66666665

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=91.68  E-value=0.19  Score=47.13  Aligned_cols=35  Identities=23%  Similarity=0.374  Sum_probs=29.6

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHH-------cCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKK-------RGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~-------~G~~Vl~~d   42 (233)
                      +.+.++|. +|+|||+++..||..+..       +|.++..++
T Consensus       192 ~~vlL~G~-pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~  233 (854)
T 1qvr_A          192 NNPVLIGE-PGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ  233 (854)
T ss_dssp             CCCEEEEC-TTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred             CceEEEcC-CCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee
Confidence            45788888 999999999999999976       477777776

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=91.67  E-value=0.11  Score=40.31  Aligned_cols=25  Identities=32%  Similarity=0.542  Sum_probs=22.2

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      .++++|.|+ .|+||||+...|+..+
T Consensus        23 G~~~~lvGp-sGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           23 IYPLVICGP-SGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCCEEEECS-TTSSHHHHHHHHHHHS
T ss_pred             CCEEEEECC-CCCCHHHHHHHHHhhC
Confidence            457899999 9999999999998877

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=91.64  E-value=1.3  Score=43.06  Aligned_cols=29  Identities=21%  Similarity=0.258  Sum_probs=23.6

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcC
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRG   35 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G   35 (233)
                      ...|+|.|. .++||||+.-.|.....+.|
T Consensus       296 ~lnIvIIGh-vDvGKSTLInrLt~~~~~~G  324 (1289)
T 3avx_A          296 HVNVGTIGH-VDHGKTTLTAAITTVLAKTY  324 (1289)
T ss_dssp             EEEEEEEES-TTSSHHHHHHHHHHHHHHHS
T ss_pred             eeEEEEEcC-CCCCHHHHHHHHHhhhcccc
Confidence            346888888 89999999999987766655

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=91.54  E-value=0.17  Score=41.53  Aligned_cols=30  Identities=23%  Similarity=0.355  Sum_probs=25.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCI   39 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl   39 (233)
                      -.+++|.|. .|+||||+...|+..+  .| +|.
T Consensus       126 Ge~vaIvGp-sGsGKSTLl~lL~gl~--~G-~I~  155 (305)
T 2v9p_A          126 KNCLAFIGP-PNTGKSMLCNSLIHFL--GG-SVL  155 (305)
T ss_dssp             CSEEEEECS-SSSSHHHHHHHHHHHH--TC-EEE
T ss_pred             CCEEEEECC-CCCcHHHHHHHHhhhc--Cc-eEE
Confidence            468999999 8999999999999998  66 453

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=91.42  E-value=0.17  Score=37.24  Aligned_cols=25  Identities=20%  Similarity=0.440  Sum_probs=22.6

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      -.++++.|. .|+||||+...|+..+
T Consensus        33 Ge~v~L~G~-nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           33 AIMVYLNGD-LGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             CEEEEEECS-TTSSHHHHHHHHHHHT
T ss_pred             CCEEEEECC-CCCCHHHHHHHHHHhC
Confidence            457899998 8999999999999998

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=91.39  E-value=0.24  Score=43.48  Aligned_cols=30  Identities=27%  Similarity=0.301  Sum_probs=26.4

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISC   38 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~V   38 (233)
                      .++|+|||+   -|||||+.-|+..|.+.|+++
T Consensus       122 ~~~IaVTGT---nGKTTTt~ml~~iL~~~g~~~  151 (494)
T 4hv4_A          122 RHGIAVAGT---HGKTTTTAMLSSIYAEAGLDP  151 (494)
T ss_dssp             SEEEEEECS---SSHHHHHHHHHHHHHHTTCCC
T ss_pred             CCEEEEecC---CChHHHHHHHHHHHHhcCCCC
Confidence            368999988   689999999999999999853

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=91.39  E-value=0.16  Score=40.31  Aligned_cols=29  Identities=17%  Similarity=0.235  Sum_probs=22.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISC   38 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~V   38 (233)
                      |++|.+||. .|+||||++..|...   .|.++
T Consensus         1 m~~i~ltG~-~~sGK~tv~~~l~~~---~g~~~   29 (241)
T 1dek_A            1 MKLIFLSGV-KRSGKDTTADFIMSN---YSAVK   29 (241)
T ss_dssp             CEEEEEECC-TTSSHHHHHHHHHHH---SCEEE
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHHh---cCCeE
Confidence            368999986 999999999777543   46665

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.26  E-value=0.3  Score=42.24  Aligned_cols=34  Identities=21%  Similarity=0.238  Sum_probs=27.8

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..+-|.+.|+ +|+|||+++..+|..+   |.....++
T Consensus       214 ~prGvLL~GP-PGtGKTllAkAiA~e~---~~~~~~v~  247 (437)
T 4b4t_L          214 PPKGVLLYGP-PGTGKTLLAKAVAATI---GANFIFSP  247 (437)
T ss_dssp             CCCEEEEESC-TTSSHHHHHHHHHHHH---TCEEEEEE
T ss_pred             CCCeEEEECC-CCCcHHHHHHHHHHHh---CCCEEEEe
Confidence            3467899999 9999999999999876   66666665

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=91.24  E-value=0.24  Score=38.44  Aligned_cols=33  Identities=24%  Similarity=0.316  Sum_probs=25.2

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      -|-.|.+||. -|+||||++.-|+    +.|..|.-.|
T Consensus         8 ~~~~iglTGg-igsGKStv~~~l~----~~g~~vidaD   40 (210)
T 4i1u_A            8 HMYAIGLTGG-IGSGKTTVADLFA----ARGASLVDTD   40 (210)
T ss_dssp             SCCEEEEECC-TTSCHHHHHHHHH----HTTCEEEEHH
T ss_pred             ceeEEEEECC-CCCCHHHHHHHHH----HCCCcEEECc
Confidence            3557999999 9999999987654    4688775444

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=90.96  E-value=0.16  Score=39.51  Aligned_cols=26  Identities=23%  Similarity=0.284  Sum_probs=21.7

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFK   32 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~   32 (233)
                      .+.++|+|+ .|+||||+...|+..+.
T Consensus        16 G~ii~l~Gp-sGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           16 GTLYIVSAP-SGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             CCEEEEECC-TTSCHHHHHHHHHHHSC
T ss_pred             CcEEEEECC-CCCCHHHHHHHHhccCC
Confidence            457888888 99999999988887764

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=90.94  E-value=0.2  Score=46.97  Aligned_cols=35  Identities=20%  Similarity=0.303  Sum_probs=30.8

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..+.++|. +|+|||+++..|+..+...+.....++
T Consensus       589 ~~vLl~Gp-~GtGKT~lA~~la~~~~~~~~~~i~i~  623 (854)
T 1qvr_A          589 GSFLFLGP-TGVGKTELAKTLAATLFDTEEAMIRID  623 (854)
T ss_dssp             EEEEEBSC-SSSSHHHHHHHHHHHHHSSGGGEEEEC
T ss_pred             eEEEEECC-CCCCHHHHHHHHHHHhcCCCCcEEEEe
Confidence            47888888 999999999999999988787877776

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=90.92  E-value=0.13  Score=42.17  Aligned_cols=35  Identities=17%  Similarity=0.283  Sum_probs=29.0

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..+.|+|. +|+|||+++..++....+.+.....++
T Consensus        26 ~~vLi~Ge-~GtGKt~lAr~i~~~~~~~~~~~v~v~   60 (304)
T 1ojl_A           26 ATVLIHGD-SGTGKELVARALHACSARSDRPLVTLN   60 (304)
T ss_dssp             SCEEEESC-TTSCHHHHHHHHHHHSSCSSSCCCEEE
T ss_pred             CcEEEECC-CCchHHHHHHHHHHhCcccCCCeEEEe
Confidence            45788888 999999999999988777777777776

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=90.88  E-value=0.15  Score=40.28  Aligned_cols=24  Identities=25%  Similarity=0.376  Sum_probs=20.8

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      +-+++.|. +|+||||++..++..+
T Consensus        50 ~g~ll~G~-~G~GKTtl~~~i~~~~   73 (254)
T 1ixz_A           50 KGVLLVGP-PGVGKTHLARAVAGEA   73 (254)
T ss_dssp             SEEEEECC-TTSSHHHHHHHHHHHT
T ss_pred             CeEEEECC-CCCCHHHHHHHHHHHh
Confidence            34888888 9999999999998876

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=90.79  E-value=0.14  Score=40.03  Aligned_cols=32  Identities=16%  Similarity=0.040  Sum_probs=25.6

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ...|+|.|. .|+||||++..|+..    +.+|.+..
T Consensus        20 g~~i~i~G~-~GsGKSTl~~~L~~~----~g~v~~~~   51 (230)
T 2vp4_A           20 PFTVLIEGN-IGSGKTTYLNHFEKY----KNDICLLT   51 (230)
T ss_dssp             CEEEEEECS-TTSCHHHHHHTTGGG----TTTEEEEC
T ss_pred             ceEEEEECC-CCCCHHHHHHHHHhc----cCCeEEEe
Confidence            468999999 999999998888775    55676654

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.75  E-value=0.21  Score=43.09  Aligned_cols=33  Identities=18%  Similarity=0.209  Sum_probs=27.4

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+-+.+.|+ +|+|||+++..+|..+   |.....++
T Consensus       206 prGiLL~GP-PGtGKT~lakAiA~~~---~~~~~~v~  238 (428)
T 4b4t_K          206 PRGVLLYGP-PGTGKTMLVKAVANST---KAAFIRVN  238 (428)
T ss_dssp             CCEEEEESC-TTTTHHHHHHHHHHHH---TCEEEEEE
T ss_pred             CceEEEECC-CCCCHHHHHHHHHHHh---CCCeEEEe
Confidence            457889999 9999999999999877   66666665

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=90.66  E-value=0.22  Score=39.20  Aligned_cols=23  Identities=17%  Similarity=0.325  Sum_probs=21.1

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      .+.|.|. +|+||||.|..|+..+
T Consensus        10 ~~~~~G~-pGsGKsT~a~~L~~~~   32 (230)
T 3gmt_A           10 RLILLGA-PGAGKGTQANFIKEKF   32 (230)
T ss_dssp             EEEEECC-TTSCHHHHHHHHHHHH
T ss_pred             ceeeECC-CCCCHHHHHHHHHHHh
Confidence            5899999 9999999999999877

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=90.63  E-value=0.22  Score=40.58  Aligned_cols=32  Identities=22%  Similarity=0.419  Sum_probs=25.1

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.+.|+|. +|+|||+++..++..+   +.++..+.
T Consensus        39 ~~vll~G~-~GtGKT~la~~i~~~~---~~~~~~~~   70 (324)
T 1hqc_A           39 EHLLLFGP-PGLGKTTLAHVIAHEL---GVNLRVTS   70 (324)
T ss_dssp             CCCEEECC-TTCCCHHHHHHHHHHH---TCCEEEEC
T ss_pred             CcEEEECC-CCCCHHHHHHHHHHHh---CCCEEEEe
Confidence            56888888 9999999999999877   45554443

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=90.61  E-value=0.19  Score=44.81  Aligned_cols=26  Identities=15%  Similarity=0.258  Sum_probs=21.9

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      ..+++.|+|. ||+||||++..++...
T Consensus       146 ~~~~v~I~G~-~GiGKTtLa~~~~~~~  171 (591)
T 1z6t_A          146 EPGWVTIHGM-AGCGKSVLAAEAVRDH  171 (591)
T ss_dssp             SCEEEEEECC-TTSSHHHHHHHHHCCH
T ss_pred             CCceEEEEcC-CCCCHHHHHHHHHhch
Confidence            3578999999 9999999999887654

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=90.56  E-value=0.26  Score=42.56  Aligned_cols=35  Identities=14%  Similarity=0.275  Sum_probs=27.1

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..+.+.+.|. +|+|||+++..+|..+  .+..+..++
T Consensus       166 ~~~~vLL~Gp-pGtGKT~lA~aia~~~--~~~~~~~v~  200 (444)
T 2zan_A          166 PWRGILLFGP-PGTGKSYLAKAVATEA--NNSTFFSIS  200 (444)
T ss_dssp             CCSEEEEECS-TTSSHHHHHHHHHHHC--CSSEEEEEC
T ss_pred             CCceEEEECC-CCCCHHHHHHHHHHHc--CCCCEEEEe
Confidence            3467899998 9999999999999876  355555554

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=90.41  E-value=0.1  Score=41.56  Aligned_cols=24  Identities=25%  Similarity=0.386  Sum_probs=20.7

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      +.+.+.|. +|+|||+++..++..+
T Consensus        45 ~~vll~G~-~GtGKT~la~~la~~~   68 (268)
T 2r62_A           45 KGVLLVGP-PGTGKTLLAKAVAGEA   68 (268)
T ss_dssp             SCCCCBCS-SCSSHHHHHHHHHHHH
T ss_pred             ceEEEECC-CCCcHHHHHHHHHHHh
Confidence            45778888 9999999999999876

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=90.40  E-value=0.19  Score=41.39  Aligned_cols=32  Identities=19%  Similarity=0.323  Sum_probs=24.2

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGM   41 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~   41 (233)
                      ...+.++|. +|+|||+++..++..+   +.+...+
T Consensus        55 ~~~vll~G~-~GtGKT~la~~ia~~~---~~~~~~~   86 (338)
T 3pfi_A           55 LDHILFSGP-AGLGKTTLANIISYEM---SANIKTT   86 (338)
T ss_dssp             CCCEEEECS-TTSSHHHHHHHHHHHT---TCCEEEE
T ss_pred             CCeEEEECc-CCCCHHHHHHHHHHHh---CCCeEEe
Confidence            356889998 9999999999997764   4444443

>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*

Probab=90.37  E-value=0.28  Score=42.78  Aligned_cols=30  Identities=17%  Similarity=0.172  Sum_probs=26.8

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISC   38 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~V   38 (233)
                      .++|.|||+   -|||||+.-|+..|.+.|+++
T Consensus       118 ~~vI~VTGT---nGKTTTt~ml~~iL~~~G~~p  147 (475)
T 1p3d_A          118 RHGIAVAGT---HGKTTTTAMISMIYTQAKLDP  147 (475)
T ss_dssp             SEEEEEESS---SCHHHHHHHHHHHHHHTTCCC
T ss_pred             CCEEEEECC---CCHHHHHHHHHHHHHhCCCCC
Confidence            478999998   589999999999999999873

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=90.36  E-value=0.27  Score=41.28  Aligned_cols=27  Identities=19%  Similarity=0.281  Sum_probs=23.2

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKK   33 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~   33 (233)
                      ...|++.|. +|+||||++..|+..+..
T Consensus        24 ~~~i~l~G~-~G~GKTTl~~~la~~l~~   50 (359)
T 2ga8_A           24 RVCVILVGS-PGSGKSTIAEELCQIINE   50 (359)
T ss_dssp             CEEEEEECC-TTSSHHHHHHHHHHHHHH
T ss_pred             eeEEEEECC-CCCcHHHHHHHHHHHhCC
Confidence            446888888 999999999999998864

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=90.30  E-value=0.23  Score=43.05  Aligned_cols=25  Identities=24%  Similarity=0.408  Sum_probs=22.2

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFK   32 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~   32 (233)
                      +.+.+.|+ +|+|||+++..+|..+.
T Consensus        64 ~~iLl~Gp-pGtGKT~la~ala~~l~   88 (456)
T 2c9o_A           64 RAVLLAGP-PGTGKTALALAIAQELG   88 (456)
T ss_dssp             CEEEEECC-TTSSHHHHHHHHHHHHC
T ss_pred             CeEEEECC-CcCCHHHHHHHHHHHhC
Confidence            56888888 99999999999999974

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=90.18  E-value=0.21  Score=36.72  Aligned_cols=27  Identities=19%  Similarity=0.290  Sum_probs=20.2

Q ss_pred             CCCCCceeEEEEeCCCCCcHHHHHHHHH
Q psy14904          1 MINKNFLHYFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         1 ~~~~~~~~i~i~~~kggvGKTt~a~~La   28 (233)
                      |-+.+...|+|.|. +|+||||+...|.
T Consensus         1 m~~~~~~ki~~~G~-~~~GKSsli~~l~   27 (181)
T 3t5g_A            1 MPQSKSRKIAILGY-RSVGKSSLTIQFV   27 (181)
T ss_dssp             -CCEEEEEEEEEES-TTSSHHHHHHHHH
T ss_pred             CCCCceEEEEEECc-CCCCHHHHHHHHH
Confidence            44444557889998 8999999987765

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=90.15  E-value=0.21  Score=37.67  Aligned_cols=27  Identities=15%  Similarity=0.314  Sum_probs=19.8

Q ss_pred             CCCCCceeEEEEeCCCCCcHHHHHHHHHH
Q psy14904          1 MINKNFLHYFITGTNTNIGKTIISCALLS   29 (233)
Q Consensus         1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~   29 (233)
                      |.+.. -.++|.|. .|+||||+...|+.
T Consensus         1 m~~~~-~kv~lvG~-~g~GKSTLl~~l~~   27 (199)
T 2f9l_A            1 MYDYL-FKVVLIGD-SGVGKSNLLSRFTR   27 (199)
T ss_dssp             CCSEE-EEEEEESS-TTSSHHHHHHHHHH
T ss_pred             CCcce-EEEEEECc-CCCCHHHHHHHHhc
Confidence            44433 34788888 89999999877764

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.11  E-value=0.26  Score=42.59  Aligned_cols=33  Identities=15%  Similarity=0.216  Sum_probs=27.2

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+-|.+.|+ +|+|||+++..+|..+   |.....++
T Consensus       215 prGvLLyGP-PGTGKTllAkAiA~e~---~~~f~~v~  247 (434)
T 4b4t_M          215 PKGALMYGP-PGTGKTLLARACAAQT---NATFLKLA  247 (434)
T ss_dssp             CCEEEEESC-TTSSHHHHHHHHHHHH---TCEEEEEE
T ss_pred             CCeeEEECc-CCCCHHHHHHHHHHHh---CCCEEEEe
Confidence            467899999 9999999999998876   66666665

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=90.06  E-value=0.18  Score=41.75  Aligned_cols=30  Identities=30%  Similarity=0.346  Sum_probs=24.3

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISC   38 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~V   38 (233)
                      .+.+.|. +|+||||++..++..+...+.++
T Consensus        48 ~~ll~Gp-~G~GKTtla~~la~~l~~~~~~~   77 (340)
T 1sxj_C           48 HLLFYGP-PGTGKTSTIVALAREIYGKNYSN   77 (340)
T ss_dssp             CEEEECS-SSSSHHHHHHHHHHHHHTTSHHH
T ss_pred             eEEEECC-CCCCHHHHHHHHHHHHcCCCccc
Confidence            3778888 99999999999999987554443

>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1

Probab=90.04  E-value=0.099  Score=43.69  Aligned_cols=35  Identities=20%  Similarity=0.171  Sum_probs=28.5

Q ss_pred             ceeEEEEeCCCCCcHHHHH-HHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIIS-CALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a-~~La~~l~~~G~~Vl~~d   42 (233)
                      ...|+|-|. =|+||||++ ..|+..|..+|. |.++.
T Consensus        12 ~~~I~iEG~-~GaGKTT~~~~~L~~~l~~~g~-vv~tr   47 (341)
T 1osn_A           12 VLRIYLDGA-YGIGKTTAAEEFLHHFAITPNR-ILLIG   47 (341)
T ss_dssp             EEEEEEEES-SSSCTTHHHHHHHHTTTTSGGG-EEEEC
T ss_pred             ceEEEEeCC-CCCCHHHHHHHHHHHHHhhCCc-EEEEe
Confidence            357888888 899999999 999999988884 66654

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=90.02  E-value=0.33  Score=36.06  Aligned_cols=86  Identities=13%  Similarity=0.040  Sum_probs=44.5

Q ss_pred             CCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCC-cHHHHHHHHHHHHh-CCCcEEEEEEcccCCCch-hhh
Q psy14904        117 TDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIG-CINNALLSLEAINS-RGLKLIGWVANHTQIVDT-LFA  193 (233)
Q Consensus       117 ~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~-~~~~~~~~~~~l~~-~~~~i~GiVlN~~~~~~~-~~~  193 (233)
                      +.+.|+|+||.-.  .  ...........+ .+++|.+.... +.......+..+.. .+.+ +-+|+||++ ... ...
T Consensus        93 ~~~~i~Dt~G~~~--~--~~~~~~~~~~~d-~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~p-iilv~NK~D-~~~~~~~  165 (208)
T 3clv_A           93 IKFDIWDTAGQER--Y--ASIVPLYYRGAT-CAIVVFDISNSNTLDRAKTWVNQLKISSNYI-IILVANKID-KNKFQVD  165 (208)
T ss_dssp             EEEEEEECTTGGG--C--TTTHHHHHTTCS-EEEEEEETTCHHHHHHHHHHHHHHHHHSCCE-EEEEEECTT-CC-CCSC
T ss_pred             eEEEEEECCCcHH--H--HHHHHHHhcCCC-EEEEEEECCCHHHHHHHHHHHHHHHhhCCCc-EEEEEECCC-cccccCC
Confidence            7899999987421  1  112223333333 57777776543 34444444444443 4545 558899998 421 111


Q ss_pred             hhhHHHHHhhcCCCce
Q psy14904        194 NENYIELTKYLNVTPL  209 (233)
Q Consensus       194 ~~~~~~l~~~~~~pvl  209 (233)
                      .+..+.+.+..+++++
T Consensus       166 ~~~~~~~~~~~~~~~~  181 (208)
T 3clv_A          166 ILEVQKYAQDNNLLFI  181 (208)
T ss_dssp             HHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHHcCCcEE
Confidence            2223333334577766

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=89.99  E-value=0.2  Score=37.14  Aligned_cols=20  Identities=15%  Similarity=0.285  Sum_probs=17.4

Q ss_pred             ceeEEEEeCCCCCcHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCA   26 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~   26 (233)
                      ..++++.|. .|+||||++..
T Consensus         9 gei~~l~G~-nGsGKSTl~~~   28 (171)
T 4gp7_A            9 LSLVVLIGS-SGSGKSTFAKK   28 (171)
T ss_dssp             SEEEEEECC-TTSCHHHHHHH
T ss_pred             CEEEEEECC-CCCCHHHHHHH
Confidence            457889998 99999999975

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=89.97  E-value=0.41  Score=39.20  Aligned_cols=32  Identities=19%  Similarity=0.227  Sum_probs=25.6

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.+.|+|. .|+|||++...++..+   +.++.+++
T Consensus        31 ~~v~i~G~-~G~GKT~L~~~~~~~~---~~~~~~~~   62 (357)
T 2fna_A           31 PITLVLGL-RRTGKSSIIKIGINEL---NLPYIYLD   62 (357)
T ss_dssp             SEEEEEES-TTSSHHHHHHHHHHHH---TCCEEEEE
T ss_pred             CcEEEECC-CCCCHHHHHHHHHHhc---CCCEEEEE
Confidence            47888888 9999999999888775   34567776

>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}

Probab=89.95  E-value=0.34  Score=42.40  Aligned_cols=30  Identities=27%  Similarity=0.287  Sum_probs=26.8

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISC   38 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~V   38 (233)
                      .++|.|||+   -|||||+.-|+..|.+.|+++
T Consensus       119 ~~vI~VTGT---nGKTTTt~ml~~iL~~~G~~p  148 (491)
T 2f00_A          119 RHGIAIAGT---HGKTTTTAMVSSIYAEAGLDP  148 (491)
T ss_dssp             SEEEEEESS---SCHHHHHHHHHHHHHHTTCCC
T ss_pred             CCEEEEECC---CCHHHHHHHHHHHHHhCCCCC
Confidence            478999998   589999999999999999873

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=89.81  E-value=0.23  Score=39.57  Aligned_cols=22  Identities=36%  Similarity=0.504  Sum_probs=18.2

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La   28 (233)
                      |+.|++.|. +|+||||+.-.|.
T Consensus         1 m~kI~lvG~-~n~GKSTL~n~L~   22 (256)
T 3iby_A            1 MTHALLIGN-PNCGKTTLFNALT   22 (256)
T ss_dssp             -CEEEEEES-TTSSHHHHHHHHH
T ss_pred             CCEEEEECC-CCCCHHHHHHHHH
Confidence            467899998 9999999987773

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.72  E-value=0.26  Score=42.13  Aligned_cols=34  Identities=18%  Similarity=0.214  Sum_probs=27.5

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..+-+.+.|+ +|+|||++|..+|..+   |.....++
T Consensus       181 ~prGvLL~GP-PGTGKTllAkAiA~e~---~~~f~~v~  214 (405)
T 4b4t_J          181 QPKGVILYGP-PGTGKTLLARAVAHHT---DCKFIRVS  214 (405)
T ss_dssp             CCCCEEEESC-SSSSHHHHHHHHHHHH---TCEEEEEE
T ss_pred             CCCceEEeCC-CCCCHHHHHHHHHHhh---CCCceEEE
Confidence            3467889999 9999999999998876   66666665

>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*

Probab=89.63  E-value=0.37  Score=43.36  Aligned_cols=34  Identities=12%  Similarity=0.140  Sum_probs=26.5

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcC----CeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRG----ISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G----~~Vl~~d   42 (233)
                      .+.|.+. +|+|||++....+.++.+.+    .+++++-
T Consensus        24 ~~lV~a~-aGsGKT~~l~~ri~~l~~~~~~~~~~iL~lt   61 (647)
T 3lfu_A           24 NLLVLAG-AGSGKTRVLVHRIAWLMSVENCSPYSIMAVT   61 (647)
T ss_dssp             CEEEEEC-TTSCHHHHHHHHHHHHHHTSCCCGGGEEEEE
T ss_pred             CEEEEEC-CCCCHHHHHHHHHHHHHHhCCCChhhEEEEe
Confidence            4566676 89999999999888887763    5888763

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=89.62  E-value=0.21  Score=40.27  Aligned_cols=31  Identities=29%  Similarity=0.523  Sum_probs=23.6

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      -+.+.|. +|+||||++..||..+   +.....++
T Consensus        46 GvlL~Gp-~GtGKTtLakala~~~---~~~~i~i~   76 (274)
T 2x8a_A           46 GVLLAGP-PGCGKTLLAKAVANES---GLNFISVK   76 (274)
T ss_dssp             EEEEESS-TTSCHHHHHHHHHHHT---TCEEEEEE
T ss_pred             eEEEECC-CCCcHHHHHHHHHHHc---CCCEEEEE
Confidence            4888888 9999999999998865   33444444

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=89.60  E-value=0.39  Score=40.97  Aligned_cols=32  Identities=16%  Similarity=0.190  Sum_probs=27.3

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISC   38 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~V   38 (233)
                      .+.+.|.|. .|+||||++..|+..+++++..+
T Consensus       174 GQr~~IvG~-sG~GKTtLl~~Iar~i~~~~~~v  205 (422)
T 3ice_A          174 GQRGLIVAP-PKAGKTMLLQNIAQSIAYNHPDC  205 (422)
T ss_dssp             TCEEEEECC-SSSSHHHHHHHHHHHHHHHCTTS
T ss_pred             CcEEEEecC-CCCChhHHHHHHHHHHhhcCCCe
Confidence            457889998 89999999999999998876544

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=89.58  E-value=0.3  Score=39.65  Aligned_cols=28  Identities=29%  Similarity=0.419  Sum_probs=23.4

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcC
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRG   35 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G   35 (233)
                      +.+.+.|. +|+||||++..++..+...+
T Consensus        47 ~~~ll~G~-~G~GKT~la~~l~~~l~~~~   74 (327)
T 1iqp_A           47 PHLLFAGP-PGVGKTTAALALARELFGEN   74 (327)
T ss_dssp             CEEEEESC-TTSSHHHHHHHHHHHHHGGG
T ss_pred             CeEEEECc-CCCCHHHHHHHHHHHhcCCc
Confidence            35788888 99999999999999986544

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=89.52  E-value=0.22  Score=39.92  Aligned_cols=24  Identities=25%  Similarity=0.443  Sum_probs=20.8

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFK   32 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~   32 (233)
                      -+++.|. +|+||||++..|+..+.
T Consensus        75 gvll~Gp-~GtGKTtl~~~i~~~~~   98 (278)
T 1iy2_A           75 GVLLVGP-PGVGKTHLARAVAGEAR   98 (278)
T ss_dssp             EEEEECC-TTSSHHHHHHHHHHHTT
T ss_pred             eEEEECC-CcChHHHHHHHHHHHcC
Confidence            4888888 99999999999998763

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=89.52  E-value=0.24  Score=41.90  Aligned_cols=32  Identities=19%  Similarity=0.287  Sum_probs=22.8

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .|+|-|. -|+||||++..|+..|..+|  |.+..
T Consensus        51 fIt~EG~-dGsGKTT~~~~Lae~L~~~g--vv~tr   82 (376)
T 1of1_A           51 RVYIDGP-HGMGKTTTTQLLVALGSRDD--IVYVP   82 (376)
T ss_dssp             EEEECSS-TTSSHHHHHHHHHC----CC--EEEEC
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHhhhCC--EEEEe
Confidence            4677777 89999999999999998887  55554

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=89.49  E-value=0.49  Score=43.64  Aligned_cols=33  Identities=24%  Similarity=0.487  Sum_probs=27.4

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ...+.+.|. +|+|||+++..|+..+   |.+...++
T Consensus       488 ~~~~ll~G~-~GtGKT~la~~la~~l---~~~~~~i~  520 (758)
T 1r6b_X          488 VGSFLFAGP-TGVGKTEVTVQLSKAL---GIELLRFD  520 (758)
T ss_dssp             SEEEEEECS-TTSSHHHHHHHHHHHH---TCEEEEEE
T ss_pred             ceEEEEECC-CCCcHHHHHHHHHHHh---cCCEEEEe
Confidence            346888988 9999999999999988   56666666

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=89.44  E-value=0.14  Score=43.02  Aligned_cols=34  Identities=24%  Similarity=0.110  Sum_probs=26.2

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG   40 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~   40 (233)
                      -..++|+|. .|+||||+...|+..+......|.+
T Consensus       175 G~~i~ivG~-sGsGKSTll~~l~~~~~~~~g~I~i  208 (361)
T 2gza_A          175 ERVIVVAGE-TGSGKTTLMKALMQEIPFDQRLITI  208 (361)
T ss_dssp             TCCEEEEES-SSSCHHHHHHHHHTTSCTTSCEEEE
T ss_pred             CCEEEEECC-CCCCHHHHHHHHHhcCCCCceEEEE
Confidence            357899998 8999999999998877654434444

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=89.39  E-value=0.24  Score=43.17  Aligned_cols=36  Identities=25%  Similarity=0.127  Sum_probs=27.9

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCC-eeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGI-SCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~-~Vl~~d   42 (233)
                      -.+++|.|. .|+||||++..|+..+...+- ++.+++
T Consensus       138 Ge~v~IvGp-nGsGKSTLlr~L~Gl~~p~~G~~pI~vd  174 (460)
T 2npi_A          138 GPRVVIVGG-SQTGKTSLSRTLCSYALKFNAYQPLYIN  174 (460)
T ss_dssp             CCCEEEEES-TTSSHHHHHHHHHHTTHHHHCCCCEEEE
T ss_pred             CCEEEEECC-CCCCHHHHHHHHhCcccccCCceeEEEc
Confidence            467999999 999999999999998876543 533443

>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...

Probab=89.30  E-value=0.21  Score=41.51  Aligned_cols=33  Identities=21%  Similarity=0.319  Sum_probs=23.6

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.|+|-|. -|+||||.+..|+..|..+|  |.+..
T Consensus         5 ~fI~~EG~-dGsGKTT~~~~La~~L~~~g--v~~tr   37 (331)
T 1e2k_A            5 LRVYIDGP-HGMGKTTTTQLLVALGSRDD--IVYVP   37 (331)
T ss_dssp             EEEEECSC-TTSSHHHHHHHHTC----CC--EEEEC
T ss_pred             EEEEEECC-CCCCHHHHHHHHHHHhhhCC--EEEEe
Confidence            46777777 89999999999999998887  55554

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=89.27  E-value=0.34  Score=35.31  Aligned_cols=38  Identities=16%  Similarity=0.227  Sum_probs=24.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904        148 PIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ  186 (233)
Q Consensus       148 ~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~  186 (233)
                      -+++|.+.......+....++.+...+.+ +-+|+||.+
T Consensus        81 ~~i~v~d~~~~~~~~~~~~l~~~~~~~~p-~ilv~nK~D  118 (178)
T 2lkc_A           81 IVILVVAADDGVMPQTVEAINHAKAANVP-IIVAINKMD  118 (178)
T ss_dssp             EEEEEEETTCCCCHHHHHHHHHHGGGSCC-EEEEEETTT
T ss_pred             EEEEEEECCCCCcHHHHHHHHHHHhCCCC-EEEEEECcc
Confidence            36777766544434444555666666777 458899998

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=89.25  E-value=0.31  Score=37.32  Aligned_cols=35  Identities=14%  Similarity=0.114  Sum_probs=28.3

Q ss_pred             CCCceeEEEEeCCCCCcHHHHHHHHHHHHH-HcCCeeeEEe
Q psy14904          3 NKNFLHYFITGTNTNIGKTIISCALLSEFK-KRGISCIGMK   42 (233)
Q Consensus         3 ~~~~~~i~i~~~kggvGKTt~a~~La~~l~-~~G~~Vl~~d   42 (233)
                      +.|||++.|||..||.|+     .++..|+ ++|++|.+++
T Consensus         2 ~~mmk~vlVtGasg~iG~-----~~~~~l~~~~g~~V~~~~   37 (221)
T 3r6d_A            2 NAMYXYITILGAAGQIAQ-----XLTATLLTYTDMHITLYG   37 (221)
T ss_dssp             CCSCSEEEEESTTSHHHH-----HHHHHHHHHCCCEEEEEE
T ss_pred             CceEEEEEEEeCCcHHHH-----HHHHHHHhcCCceEEEEe
Confidence            346788999998899886     5666777 7999998875

>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}

Probab=89.25  E-value=0.46  Score=38.05  Aligned_cols=35  Identities=14%  Similarity=-0.108  Sum_probs=29.4

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .++.|++. +|+||||++...+..-+++|.+++++-
T Consensus        22 s~~li~g~-p~~~~~~l~~qfl~~g~~~Ge~~~~~~   56 (260)
T 3bs4_A           22 LILIHEED-ASSRGKDILFYILSRKLKSDNLVGMFS   56 (260)
T ss_dssp             EEEEEECS-GGGCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             cEEEEEeC-CCccHHHHHHHHHHHHHHCCCcEEEEE
Confidence            45666555 888888999999999999999999985

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=89.22  E-value=0.39  Score=39.23  Aligned_cols=32  Identities=19%  Similarity=0.310  Sum_probs=24.0

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+++.+..+|+|||+++..++..+   +.++..++
T Consensus        49 ~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~   80 (324)
T 3u61_B           49 HIILHSPSPGTGKTTVAKALCHDV---NADMMFVN   80 (324)
T ss_dssp             SEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEE
T ss_pred             eEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEc
Confidence            344445559999999999998776   66777766

>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1

Probab=89.18  E-value=0.34  Score=41.98  Aligned_cols=31  Identities=19%  Similarity=0.194  Sum_probs=26.7

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeee
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCI   39 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl   39 (233)
                      +.++|.|||+   -|||||+.-|+..|.+.| ++.
T Consensus        99 ~~~vI~VTGT---nGKTTT~~~l~~iL~~~g-~~~  129 (452)
T 1gg4_A           99 PARVVALTGS---SGKTSVKEMTAAILSQCG-NTL  129 (452)
T ss_dssp             CCEEEEEECS---SCHHHHHHHHHHHHTTTS-CEE
T ss_pred             CCCEEEEeCC---CCcHHHHHHHHHHHHhcC-CEe
Confidence            4689999988   689999999999999999 444

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=89.17  E-value=0.3  Score=40.23  Aligned_cols=26  Identities=31%  Similarity=0.327  Sum_probs=22.5

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKK   33 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~   33 (233)
                      ..+.+.|. +|+||||++..++..+..
T Consensus        59 ~~~ll~G~-~G~GKT~la~~la~~l~~   84 (353)
T 1sxj_D           59 PHMLFYGP-PGTGKTSTILALTKELYG   84 (353)
T ss_dssp             CCEEEECS-TTSSHHHHHHHHHHHHHH
T ss_pred             CEEEEECC-CCCCHHHHHHHHHHHhCC
Confidence            34788888 999999999999999864

>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*

Probab=89.16  E-value=0.3  Score=40.21  Aligned_cols=40  Identities=15%  Similarity=0.177  Sum_probs=27.6

Q ss_pred             CCCCC-ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          1 MINKN-FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         1 ~~~~~-~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ||.+| ||++.+++. .| |=...+..|+.+|+++|++|.++-
T Consensus         1 mM~~m~mkIl~~~~~-~g-G~~~~~~~la~~L~~~G~~V~v~~   41 (364)
T 1f0k_A            1 MMSGQGKRLMVMAGG-TG-GHVFPGLAVAHHLMAQGWQVRWLG   41 (364)
T ss_dssp             ------CEEEEECCS-SH-HHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             CCCCCCcEEEEEeCC-Cc-cchhHHHHHHHHHHHcCCEEEEEe
Confidence            67775 787777543 33 677778899999999999999874

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=89.11  E-value=0.35  Score=40.09  Aligned_cols=26  Identities=31%  Similarity=0.466  Sum_probs=21.8

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKK   33 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~   33 (233)
                      +.+.++|. .|+||||++..++..+..
T Consensus        39 ~~~ll~G~-~G~GKT~la~~la~~l~~   64 (373)
T 1jr3_A           39 HAYLFSGT-RGVGKTSIARLLAKGLNC   64 (373)
T ss_dssp             SEEEEESC-TTSSHHHHHHHHHHHHSC
T ss_pred             eEEEEECC-CCCCHHHHHHHHHHHhCC
Confidence            35778887 999999999999988853

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=89.11  E-value=0.32  Score=38.44  Aligned_cols=37  Identities=22%  Similarity=0.197  Sum_probs=30.1

Q ss_pred             CCCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          1 MINKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      |+.-..|++.|||..+|.|+     .++..|+++|++|.+++
T Consensus         1 M~~l~~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~   37 (256)
T 2d1y_A            1 MGLFAGKGVLVTGGARGIGR-----AIAQAFAREGALVALCD   37 (256)
T ss_dssp             -CTTTTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred             CCCCCCCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEe
Confidence            55555689999999999887     57788899999998876

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=88.98  E-value=0.36  Score=40.91  Aligned_cols=25  Identities=28%  Similarity=0.389  Sum_probs=21.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      .+.+.|.|+ +|+||||++..|+..+
T Consensus       169 ~~~i~l~G~-~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          169 KRYWLFKGP-IDSGKTTLAAALLELC  193 (377)
T ss_dssp             CCEEEEECS-TTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECC-CCCCHHHHHHHHHhhc
Confidence            457888888 9999999999999764

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=88.98  E-value=0.34  Score=34.62  Aligned_cols=89  Identities=11%  Similarity=0.125  Sum_probs=45.4

Q ss_pred             CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCC-CcHHHHHHHHHHHH----hCCCcEEEEEEcccCCCch
Q psy14904        116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKI-GCINNALLSLEAIN----SRGLKLIGWVANHTQIVDT  190 (233)
Q Consensus       116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~-~~~~~~~~~~~~l~----~~~~~i~GiVlN~~~~~~~  190 (233)
                      .+++.++|+||.-..    ...........+ .+++|.+... .+..++....+.+.    ..+.+++ +|+||++-...
T Consensus        50 ~~~~~~~D~~G~~~~----~~~~~~~~~~~~-~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~i-iv~nK~Dl~~~  123 (166)
T 2ce2_X           50 TCLLDILDTAGQEEY----SAMRDQYMRTGE-GFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV-LVGNKSDLAAR  123 (166)
T ss_dssp             EEEEEEEECCCCSSC----CHHHHHHHHHCS-EEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEE-EEEECTTCSCC
T ss_pred             EEEEEEEECCCchhh----hHHHHHhhccCC-EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE-EEEEchhhhhc
Confidence            467899999864210    111222333333 4666666543 23333333333332    2367744 88999982211


Q ss_pred             hhhhhhHHHHHhhcCCCceE
Q psy14904        191 LFANENYIELTKYLNVTPLG  210 (233)
Q Consensus       191 ~~~~~~~~~l~~~~~~pvlg  210 (233)
                      ....+..+.+.+..+.+++.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~  143 (166)
T 2ce2_X          124 TVESRQAQDLARSYGIPYIE  143 (166)
T ss_dssp             CSCHHHHHHHHHHHTCCEEE
T ss_pred             ccCHHHHHHHHHHcCCeEEE
Confidence            12233444555556888774

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=88.92  E-value=0.4  Score=34.65  Aligned_cols=21  Identities=33%  Similarity=0.433  Sum_probs=16.9

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La   28 (233)
                      ..|+|.|. +|+||||+...|.
T Consensus         8 ~~i~v~G~-~~~GKssl~~~l~   28 (171)
T 1upt_A            8 MRILILGL-DGAGKTTILYRLQ   28 (171)
T ss_dssp             EEEEEECS-TTSSHHHHHHHHH
T ss_pred             cEEEEECC-CCCCHHHHHHHHh
Confidence            35788887 8999999987763

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=88.89  E-value=0.35  Score=35.38  Aligned_cols=25  Identities=20%  Similarity=0.380  Sum_probs=17.5

Q ss_pred             CCCceeEEEEeCCCCCcHHHHHHHHH
Q psy14904          3 NKNFLHYFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         3 ~~~~~~i~i~~~kggvGKTt~a~~La   28 (233)
                      .++.-.|+|.|. +|+||||+...+.
T Consensus         5 ~~~~~ki~v~G~-~~~GKssl~~~~~   29 (182)
T 3bwd_D            5 ASRFIKCVTVGD-GAVGKTCLLISYT   29 (182)
T ss_dssp             --CCCEEEEECS-TTSSHHHHHHHHH
T ss_pred             CCceEEEEEECC-CCCCHHHHHHHHh
Confidence            333445888887 9999999986554

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=88.86  E-value=0.29  Score=40.48  Aligned_cols=25  Identities=28%  Similarity=0.377  Sum_probs=21.2

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFK   32 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~   32 (233)
                      +.+.++|. .|+||||++..|+..+.
T Consensus        37 ~~~ll~Gp-~G~GKTtl~~~la~~l~   61 (354)
T 1sxj_E           37 PHLLLYGP-NGTGKKTRCMALLESIF   61 (354)
T ss_dssp             CCEEEECS-TTSSHHHHHHTHHHHHS
T ss_pred             CeEEEECC-CCCCHHHHHHHHHHHHc
Confidence            34888888 99999999999999763

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=88.79  E-value=0.36  Score=39.05  Aligned_cols=29  Identities=34%  Similarity=0.438  Sum_probs=23.6

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCC
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGI   36 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~   36 (233)
                      +.+.++|. +|+|||+++..++..+...+.
T Consensus        43 ~~~ll~G~-~G~GKt~la~~l~~~l~~~~~   71 (323)
T 1sxj_B           43 PHMIISGM-PGIGKTTSVHCLAHELLGRSY   71 (323)
T ss_dssp             CCEEEECS-TTSSHHHHHHHHHHHHHGGGH
T ss_pred             CeEEEECc-CCCCHHHHHHHHHHHhcCCcc
Confidence            34778887 999999999999999865443

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=88.74  E-value=0.29  Score=38.53  Aligned_cols=34  Identities=15%  Similarity=0.305  Sum_probs=28.5

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .|.|++.|||..+|.|+     .++..|+++|++|.+++
T Consensus        20 ~m~k~vlITGas~gIG~-----~la~~l~~~G~~V~~~~   53 (251)
T 3orf_A           20 HMSKNILVLGGSGALGA-----EVVKFFKSKSWNTISID   53 (251)
T ss_dssp             --CCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred             ccCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEe
Confidence            45689999999888886     78889999999999886

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.73  E-value=0.32  Score=42.33  Aligned_cols=34  Identities=18%  Similarity=0.179  Sum_probs=26.9

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..+-|.+.|+ +|+|||+++..+|..+   |.....++
T Consensus       242 pprGILLyGP-PGTGKTlLAkAiA~e~---~~~fi~vs  275 (467)
T 4b4t_H          242 PPKGILLYGP-PGTGKTLCARAVANRT---DATFIRVI  275 (467)
T ss_dssp             CCSEEEECSC-TTSSHHHHHHHHHHHH---TCEEEEEE
T ss_pred             CCCceEeeCC-CCCcHHHHHHHHHhcc---CCCeEEEE
Confidence            4567889999 9999999999998876   55555554

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=88.62  E-value=0.4  Score=38.74  Aligned_cols=29  Identities=24%  Similarity=0.346  Sum_probs=23.8

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCC
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGI   36 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~   36 (233)
                      +.+.++|. +|+|||+++..++..+...+.
T Consensus        39 ~~~ll~G~-~G~GKt~la~~l~~~l~~~~~   67 (319)
T 2chq_A           39 PHLLFSGP-PGTGKTATAIALARDLFGENW   67 (319)
T ss_dssp             CCEEEESS-SSSSHHHHHHHHHHHHHTTCH
T ss_pred             CeEEEECc-CCcCHHHHHHHHHHHhcCCcc
Confidence            35788888 999999999999999865443

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=88.55  E-value=0.41  Score=35.58  Aligned_cols=22  Identities=23%  Similarity=0.457  Sum_probs=18.2

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La   28 (233)
                      ...|+|.|. +|+||||+...|.
T Consensus        23 ~~~i~v~G~-~~~GKSsli~~l~   44 (195)
T 1svi_A           23 LPEIALAGR-SNVGKSSFINSLI   44 (195)
T ss_dssp             CCEEEEEEB-TTSSHHHHHHHHH
T ss_pred             CCEEEEECC-CCCCHHHHHHHHh
Confidence            456889998 8999999987764

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=88.54  E-value=0.4  Score=35.84  Aligned_cols=86  Identities=19%  Similarity=0.216  Sum_probs=42.6

Q ss_pred             CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCC-CcHHHHHHHHHHHH----hCCCcEEEEEEcccCCCch
Q psy14904        116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKI-GCINNALLSLEAIN----SRGLKLIGWVANHTQIVDT  190 (233)
Q Consensus       116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~-~~~~~~~~~~~~l~----~~~~~i~GiVlN~~~~~~~  190 (233)
                      .+.+.++|+||.-.     ...........+ .+++|.+... .++..+....+.+.    ..+.+++ +|.||++ -..
T Consensus        75 ~~~~~l~Dt~G~~~-----~~~~~~~~~~~d-~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~NK~D-l~~  146 (196)
T 2atv_A           75 VVSMEILDTAGQED-----TIQREGHMRWGE-GFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLI-LVGNKAD-LDH  146 (196)
T ss_dssp             EEEEEEEECCCCCC-----CHHHHHHHHHCS-EEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEE-EEEECGG-GGG
T ss_pred             EEEEEEEECCCCCc-----ccchhhhhccCC-EEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEE-EEEECcc-ccc
Confidence            46688899976432     111222333333 4677776653 24443333333332    2466644 8899998 211


Q ss_pred             --hhhhhhHHHHHhhcCCCce
Q psy14904        191 --LFANENYIELTKYLNVTPL  209 (233)
Q Consensus       191 --~~~~~~~~~l~~~~~~pvl  209 (233)
                        ....+....+.+..+.+++
T Consensus       147 ~~~v~~~~~~~~~~~~~~~~~  167 (196)
T 2atv_A          147 SRQVSTEEGEKLATELACAFY  167 (196)
T ss_dssp             GCCSCHHHHHHHHHHHTSEEE
T ss_pred             ccccCHHHHHHHHHHhCCeEE
Confidence              1112223344444577666

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=88.52  E-value=0.33  Score=39.12  Aligned_cols=37  Identities=24%  Similarity=0.369  Sum_probs=28.4

Q ss_pred             CCCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          1 MINKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      |+..+.|++.|||..+|.|+     .+|..|+++|.+|.+++
T Consensus        23 m~~~~~k~~lVTGas~GIG~-----aia~~la~~G~~V~~~~   59 (283)
T 3v8b_A           23 MMNQPSPVALITGAGSGIGR-----ATALALAADGVTVGALG   59 (283)
T ss_dssp             ----CCCEEEEESCSSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred             hcCCCCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEe
Confidence            44445689999999888886     57788999999999876

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=88.47  E-value=0.34  Score=35.44  Aligned_cols=22  Identities=23%  Similarity=0.350  Sum_probs=17.4

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALLS   29 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~   29 (233)
                      -.|++.|. +||||||+...|..
T Consensus         8 ~ki~~vG~-~~vGKTsli~~l~~   29 (178)
T 2iwr_A            8 LRLGVLGD-ARSGKSSLIHRFLT   29 (178)
T ss_dssp             EEEEEECC-GGGCHHHHHHHHHH
T ss_pred             eEEEEECC-CCCCHHHHHHHHHh
Confidence            35788888 89999998876653

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=88.43  E-value=0.36  Score=42.92  Aligned_cols=26  Identities=15%  Similarity=0.241  Sum_probs=22.8

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFK   32 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~   32 (233)
                      .+.+.+.|. +|+||||++..++..+.
T Consensus       108 g~~vll~Gp-~GtGKTtlar~ia~~l~  133 (543)
T 3m6a_A          108 GPILCLAGP-PGVGKTSLAKSIAKSLG  133 (543)
T ss_dssp             SCEEEEESS-SSSSHHHHHHHHHHHHT
T ss_pred             CCEEEEECC-CCCCHHHHHHHHHHhcC
Confidence            457888998 99999999999999883

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=88.29  E-value=0.3  Score=42.29  Aligned_cols=24  Identities=17%  Similarity=0.192  Sum_probs=21.2

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      +.+.+.|. +|+||||++..++..+
T Consensus        51 ~~vLL~Gp-pGtGKTtlAr~ia~~~   74 (447)
T 3pvs_A           51 HSMILWGP-PGTGKTTLAEVIARYA   74 (447)
T ss_dssp             CEEEEECS-TTSSHHHHHHHHHHHT
T ss_pred             cEEEEECC-CCCcHHHHHHHHHHHh
Confidence            46888888 9999999999998876

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=88.26  E-value=0.31  Score=42.24  Aligned_cols=33  Identities=24%  Similarity=0.262  Sum_probs=26.3

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.|.+.|. +|+||||++..||..+   |.....++
T Consensus        50 ~~~iLl~Gp-pGtGKT~lar~lA~~l---~~~~~~v~   82 (444)
T 1g41_A           50 PKNILMIGP-TGVGKTEIARRLAKLA---NAPFIKVE   82 (444)
T ss_dssp             CCCEEEECC-TTSSHHHHHHHHHHHT---TCCEEEEE
T ss_pred             CceEEEEcC-CCCCHHHHHHHHHHHc---CCCceeec
Confidence            456889998 9999999999999877   55555555

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=88.18  E-value=0.29  Score=37.89  Aligned_cols=32  Identities=19%  Similarity=0.278  Sum_probs=26.2

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ||++.|||..+|.|+     .++..|+++|++|.+++
T Consensus         1 Mk~vlVTGas~gIG~-----~~a~~l~~~G~~V~~~~   32 (230)
T 3guy_A            1 MSLIVITGASSGLGA-----ELAKLYDAEGKATYLTG   32 (230)
T ss_dssp             --CEEEESTTSHHHH-----HHHHHHHHTTCCEEEEE
T ss_pred             CCEEEEecCCchHHH-----HHHHHHHHCCCEEEEEe
Confidence            578999999888887     66778899999999876

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=88.14  E-value=0.18  Score=38.95  Aligned_cols=37  Identities=16%  Similarity=0.264  Sum_probs=28.8

Q ss_pred             CCCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          1 MINKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      |+..+.|++.|||..+|.|+     .++..|+++|++|.+.+
T Consensus         1 M~~~~~k~vlVTGas~gIG~-----~~a~~l~~~G~~V~~~~   37 (223)
T 3uce_A            1 MMGSDKTVYVVLGGTSGIGA-----ELAKQLESEHTIVHVAS   37 (223)
T ss_dssp             ----CCEEEEEETTTSHHHH-----HHHHHHCSTTEEEEEES
T ss_pred             CCCCCCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEec
Confidence            66667789999999898887     56778899999999876

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=88.14  E-value=0.38  Score=44.47  Aligned_cols=27  Identities=22%  Similarity=0.282  Sum_probs=22.8

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKK   33 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~   33 (233)
                      .+.+.+.|. +|+|||+++..||..+..
T Consensus       201 ~~~vLL~G~-pGtGKT~la~~la~~l~~  227 (758)
T 3pxi_A          201 KNNPVLIGE-PGVGKTAIAEGLAQQIIN  227 (758)
T ss_dssp             SCEEEEESC-TTTTTHHHHHHHHHHHHS
T ss_pred             CCCeEEECC-CCCCHHHHHHHHHHHHhc
Confidence            346788888 999999999999999843

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=88.04  E-value=0.31  Score=40.82  Aligned_cols=27  Identities=22%  Similarity=0.285  Sum_probs=22.9

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKK   33 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~   33 (233)
                      .+.++|.|. .|+||||+...|+..+.-
T Consensus       170 g~k~~IvG~-nGsGKSTLlk~L~gl~~~  196 (365)
T 1lw7_A          170 AKTVAILGG-ESSGKSVLVNKLAAVFNT  196 (365)
T ss_dssp             CEEEEEECC-TTSHHHHHHHHHHHHTTC
T ss_pred             hCeEEEECC-CCCCHHHHHHHHHHHhCC
Confidence            457899998 899999999999988753

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=88.02  E-value=0.21  Score=44.15  Aligned_cols=34  Identities=18%  Similarity=0.217  Sum_probs=25.3

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGM   41 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~   41 (233)
                      ...+.|+|. .|+||||+...|+..+... .++..+
T Consensus       260 g~~i~I~Gp-tGSGKTTlL~aL~~~i~~~-~giiti  293 (511)
T 2oap_1          260 KFSAIVVGE-TASGKTTTLNAIMMFIPPD-AKVVSI  293 (511)
T ss_dssp             TCCEEEEES-TTSSHHHHHHHHGGGSCTT-CCEEEE
T ss_pred             CCEEEEECC-CCCCHHHHHHHHHhhCCCC-CCEEEE
Confidence            346899998 9999999999888877443 344443

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=88.01  E-value=0.39  Score=35.55  Aligned_cols=21  Identities=19%  Similarity=0.539  Sum_probs=17.6

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHH
Q psy14904          8 HYFITGTNTNIGKTIISCALLS   29 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~   29 (233)
                      .|+|.|. +|+||||+...|..
T Consensus        23 ki~vvG~-~~~GKSsli~~l~~   43 (190)
T 3con_A           23 KLVVVGA-GGVGKSALTIQLIQ   43 (190)
T ss_dssp             EEEEECS-TTSSHHHHHHHHHH
T ss_pred             EEEEECc-CCCCHHHHHHHHHc
Confidence            5778887 99999999888763

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=88.00  E-value=0.18  Score=41.92  Aligned_cols=34  Identities=18%  Similarity=0.042  Sum_probs=26.0

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG   40 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~   40 (233)
                      ...++|+|. .|+||||+...|+..+......|.+
T Consensus       171 g~~v~i~G~-~GsGKTTll~~l~g~~~~~~g~i~i  204 (330)
T 2pt7_A          171 GKNVIVCGG-TGSGKTTYIKSIMEFIPKEERIISI  204 (330)
T ss_dssp             TCCEEEEES-TTSCHHHHHHHGGGGSCTTSCEEEE
T ss_pred             CCEEEEECC-CCCCHHHHHHHHhCCCcCCCcEEEE
Confidence            357899998 8999999998888887654444444

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=87.95  E-value=1.8  Score=30.65  Aligned_cols=20  Identities=20%  Similarity=0.562  Sum_probs=16.6

Q ss_pred             eEEEEeCCCCCcHHHHHHHHH
Q psy14904          8 HYFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La   28 (233)
                      .|++.|. +|+||||+...|.
T Consensus         5 ~i~v~G~-~~~GKssl~~~l~   24 (166)
T 2ce2_X            5 KLVVVGA-GGVGKSALTIQLI   24 (166)
T ss_dssp             EEEEEES-TTSSHHHHHHHHH
T ss_pred             EEEEECC-CCCCHHHHHHHHH
Confidence            4778887 9999999987765

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=87.94  E-value=0.44  Score=35.85  Aligned_cols=88  Identities=8%  Similarity=-0.000  Sum_probs=43.2

Q ss_pred             CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCC-CcHHHHHHHHHHHHh----CCCcEEEEEEcccCCCc-
Q psy14904        116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKI-GCINNALLSLEAINS----RGLKLIGWVANHTQIVD-  189 (233)
Q Consensus       116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~-~~~~~~~~~~~~l~~----~~~~i~GiVlN~~~~~~-  189 (233)
                      .+.+.|+|+||.-..  . . ......... ..+++|.+... .++..+....+.+.+    .+.++ -+|.||++-.. 
T Consensus        71 ~~~~~l~Dt~G~~~~--~-~-~~~~~~~~~-d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl~~~  144 (201)
T 3oes_A           71 EFHLHLVDTAGQDEY--S-I-LPYSFIIGV-HGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPV-VLVGNKADLSPE  144 (201)
T ss_dssp             CEEEEEEEECCCCTT--C-C-CCGGGTTTC-CEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCE-EEEEECTTCGGG
T ss_pred             EEEEEEEECCCccch--H-H-HHHHHHhcC-CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECccCccc
Confidence            567889999864311  0 0 111112222 24666666553 244444444444432    35664 48899998211 


Q ss_pred             hhhhhhhHHHHHhhcCCCce
Q psy14904        190 TLFANENYIELTKYLNVTPL  209 (233)
Q Consensus       190 ~~~~~~~~~~l~~~~~~pvl  209 (233)
                      ........+.+.+..+.+++
T Consensus       145 ~~v~~~~~~~~~~~~~~~~~  164 (201)
T 3oes_A          145 REVQAVEGKKLAESWGATFM  164 (201)
T ss_dssp             CCSCHHHHHHHHHHHTCEEE
T ss_pred             cccCHHHHHHHHHHhCCeEE
Confidence            11112333445555677665

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=87.94  E-value=0.42  Score=37.71  Aligned_cols=36  Identities=17%  Similarity=0.462  Sum_probs=29.4

Q ss_pred             CCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          2 INKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         2 ~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.-+.|++.|||..+|.|+     .++..|+++|.+|.+++
T Consensus         3 ~~l~~k~~lVTGas~gIG~-----aia~~l~~~G~~V~~~~   38 (257)
T 3tpc_A            3 MQLKSRVFIVTGASSGLGA-----AVTRMLAQEGATVLGLD   38 (257)
T ss_dssp             -CCTTCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred             cccCCCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEe
Confidence            3445589999999998887     57888999999999876

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=87.86  E-value=0.45  Score=34.70  Aligned_cols=22  Identities=27%  Similarity=0.480  Sum_probs=17.9

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La   28 (233)
                      ...|+|.|. +|+||||+...|.
T Consensus         8 ~~~i~v~G~-~~~GKSsli~~l~   29 (182)
T 1ky3_A            8 ILKVIILGD-SGVGKTSLMHRYV   29 (182)
T ss_dssp             EEEEEEECC-TTSSHHHHHHHHH
T ss_pred             eEEEEEECC-CCCCHHHHHHHHH
Confidence            346888887 9999999987665

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=87.82  E-value=0.5  Score=39.03  Aligned_cols=28  Identities=14%  Similarity=0.147  Sum_probs=23.3

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHc
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKR   34 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~   34 (233)
                      .+.+.++|. .|+|||+++..+|..+...
T Consensus        24 ~~a~L~~G~-~G~GKt~~a~~la~~l~~~   51 (334)
T 1a5t_A           24 HHALLIQAL-PGMGDDALIYALSRYLLCQ   51 (334)
T ss_dssp             CSEEEEECC-TTSCHHHHHHHHHHHHTCS
T ss_pred             ceeEEEECC-CCchHHHHHHHHHHHHhCC
Confidence            345788888 9999999999999998643

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=87.82  E-value=0.43  Score=37.71  Aligned_cols=33  Identities=21%  Similarity=0.332  Sum_probs=28.4

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.|++.|||..+|.|+     .++..|+++|++|.+++
T Consensus         7 ~~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~   39 (259)
T 4e6p_A            7 EGKSALITGSARGIGR-----AFAEAYVREGATVAIAD   39 (259)
T ss_dssp             TTCEEEEETCSSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEe
Confidence            4579999999888887     67888999999999876

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=87.81  E-value=0.45  Score=38.05  Aligned_cols=37  Identities=16%  Similarity=0.165  Sum_probs=30.6

Q ss_pred             CCCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          1 MINKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      |..-+.|++.|||..+|.|+     .+|..|+++|.+|.+++
T Consensus         5 m~~l~gk~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~   41 (287)
T 3pxx_A            5 MGRVQDKVVLVTGGARGQGR-----SHAVKLAEEGADIILFD   41 (287)
T ss_dssp             CCTTTTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred             ccccCCCEEEEeCCCChHHH-----HHHHHHHHCCCeEEEEc
Confidence            44445689999999888886     68888999999999986

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=87.72  E-value=0.17  Score=41.59  Aligned_cols=24  Identities=21%  Similarity=0.347  Sum_probs=20.8

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      ..+.+.|. +|+|||+++..++..+
T Consensus        47 ~~vll~G~-pGtGKT~la~~la~~~   70 (331)
T 2r44_A           47 GHILLEGV-PGLAKTLSVNTLAKTM   70 (331)
T ss_dssp             CCEEEESC-CCHHHHHHHHHHHHHT
T ss_pred             CeEEEECC-CCCcHHHHHHHHHHHh
Confidence            35788888 9999999999999877

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=87.67  E-value=0.19  Score=40.02  Aligned_cols=35  Identities=20%  Similarity=0.392  Sum_probs=29.3

Q ss_pred             CCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          3 NKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         3 ~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..+.|++.|||..+|.|+     .++..|+++|++|.+.+
T Consensus        25 ~~~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~   59 (260)
T 3un1_A           25 RNQQKVVVITGASQGIGA-----GLVRAYRDRNYRVVATS   59 (260)
T ss_dssp             HTTCCEEEESSCSSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred             CcCCCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEe
Confidence            334579999999898886     67788999999999986

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=87.64  E-value=3  Score=35.02  Aligned_cols=65  Identities=9%  Similarity=-0.069  Sum_probs=40.5

Q ss_pred             CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEc-ccC
Q psy14904        116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVAN-HTQ  186 (233)
Q Consensus       116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN-~~~  186 (233)
                      ++.+.|+||||.-.  +.  .....-+... .-+++|.+ ..+...++......++..+++..-+++| |++
T Consensus        59 ~~~i~iiDtPGh~~--f~--~~~~~~~~~a-D~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~D  124 (370)
T 2elf_A           59 GRNMVFVDAHSYPK--TL--KSLITALNIS-DIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDS  124 (370)
T ss_dssp             SSEEEEEECTTTTT--CH--HHHHHHHHTC-SEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGG
T ss_pred             CeEEEEEECCChHH--HH--HHHHHHHHHC-CEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccC
Confidence            45699999987531  00  0111122223 35677777 6555566666666777788887567899 998

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=87.62  E-value=0.6  Score=38.29  Aligned_cols=35  Identities=17%  Similarity=0.241  Sum_probs=29.0

Q ss_pred             CCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          3 NKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         3 ~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .-+.|++.|||..+|.|+     .++..|+++|++|.+.+
T Consensus         5 ~l~~k~vlVTGas~gIG~-----~la~~l~~~G~~Vv~~~   39 (319)
T 3ioy_A            5 DFAGRTAFVTGGANGVGI-----GLVRQLLNQGCKVAIAD   39 (319)
T ss_dssp             CCTTCEEEEETTTSTHHH-----HHHHHHHHTTCEEEEEE
T ss_pred             CCCCCEEEEcCCchHHHH-----HHHHHHHHCCCEEEEEE
Confidence            334579999999999887     67788889999998875

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.62  E-value=0.47  Score=40.87  Aligned_cols=33  Identities=15%  Similarity=0.235  Sum_probs=26.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+-|.+.|+ +|+|||++|..+|..+   |.....++
T Consensus       216 prGvLLyGP-PGTGKTlLAkAiA~e~---~~~fi~v~  248 (437)
T 4b4t_I          216 PKGVILYGA-PGTGKTLLAKAVANQT---SATFLRIV  248 (437)
T ss_dssp             CSEEEEESS-TTTTHHHHHHHHHHHH---TCEEEEEE
T ss_pred             CCCCceECC-CCchHHHHHHHHHHHh---CCCEEEEE
Confidence            467889999 9999999999999876   55555554

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=87.55  E-value=0.59  Score=34.00  Aligned_cols=88  Identities=13%  Similarity=0.105  Sum_probs=43.8

Q ss_pred             CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCC-CcHHHHHHHHHHH----HhCCCcEEEEEEcccCCCc-
Q psy14904        116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKI-GCINNALLSLEAI----NSRGLKLIGWVANHTQIVD-  189 (233)
Q Consensus       116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~-~~~~~~~~~~~~l----~~~~~~i~GiVlN~~~~~~-  189 (233)
                      .+.+.++|+||.-.  .  ...........+ .+++|.+... .++..+....+.+    ...+.++ -+|+||.+-.. 
T Consensus        56 ~~~~~~~Dt~G~~~--~--~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~~  129 (181)
T 2fn4_A           56 PARLDILDTAGQEE--F--GAMREQYMRAGH-GFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPV-VLVGNKADLESQ  129 (181)
T ss_dssp             EEEEEEEECCCTTT--T--SCCHHHHHHHCS-EEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCE-EEEEECGGGGGG
T ss_pred             EEEEEEEECCCchh--h--HHHHHHHHhhCC-EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECcccccc
Confidence            35678999986421  1  112333344433 4666666553 2344433333333    2346674 48899998211 


Q ss_pred             hhhhhhhHHHHHhhcCCCce
Q psy14904        190 TLFANENYIELTKYLNVTPL  209 (233)
Q Consensus       190 ~~~~~~~~~~l~~~~~~pvl  209 (233)
                      .....+..+.+.+..+.+++
T Consensus       130 ~~v~~~~~~~~~~~~~~~~~  149 (181)
T 2fn4_A          130 RQVPRSEASAFGASHHVAYF  149 (181)
T ss_dssp             CCSCHHHHHHHHHHTTCEEE
T ss_pred             cccCHHHHHHHHHHcCCeEE
Confidence            11112333444445576665

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=87.50  E-value=0.41  Score=38.49  Aligned_cols=34  Identities=24%  Similarity=0.238  Sum_probs=28.8

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      -+.|++.|||..+|.|+     .+|..|+++|.+|.+.+
T Consensus        23 l~~k~~lVTGas~GIG~-----~ia~~la~~G~~V~~~~   56 (281)
T 3v2h_A           23 MMTKTAVITGSTSGIGL-----AIARTLAKAGANIVLNG   56 (281)
T ss_dssp             CTTCEEEEETCSSHHHH-----HHHHHHHHTTCEEEEEC
T ss_pred             cCCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEe
Confidence            34589999999888887     67888999999999875

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=87.43  E-value=0.41  Score=36.23  Aligned_cols=21  Identities=19%  Similarity=0.265  Sum_probs=17.1

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La   28 (233)
                      ..|+|.|. +|+||||+...|.
T Consensus        26 ~ki~vvG~-~~~GKSsli~~l~   46 (207)
T 2fv8_A           26 KKLVVVGD-GACGKTCLLIVFS   46 (207)
T ss_dssp             EEEEEEEC-TTSSHHHHHHHHH
T ss_pred             cEEEEECc-CCCCHHHHHHHHh
Confidence            35888888 9999999986654

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=87.36  E-value=0.5  Score=36.90  Aligned_cols=32  Identities=22%  Similarity=0.264  Sum_probs=27.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .|++.|||..+|.|+     .++..|+++|++|.+++
T Consensus        11 ~k~vlITGasggiG~-----~la~~l~~~G~~V~~~~   42 (254)
T 2wsb_A           11 GACAAVTGAGSGIGL-----EICRAFAASGARLILID   42 (254)
T ss_dssp             TCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEe
Confidence            478999999888887     67888899999999876

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=87.31  E-value=0.47  Score=37.93  Aligned_cols=37  Identities=16%  Similarity=0.163  Sum_probs=29.9

Q ss_pred             CCCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          1 MINKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      |..-+.|++.|||..+|.|+     .+|..|+++|.+|.+++
T Consensus         5 m~~l~~k~~lVTGas~gIG~-----a~a~~l~~~G~~V~~~~   41 (281)
T 3s55_A            5 MADFEGKTALITGGARGMGR-----SHAVALAEAGADIAICD   41 (281)
T ss_dssp             -CTTTTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred             ccccCCCEEEEeCCCchHHH-----HHHHHHHHCCCeEEEEe
Confidence            34445689999999888886     67888999999999987

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=87.28  E-value=0.48  Score=34.04  Aligned_cols=87  Identities=15%  Similarity=0.104  Sum_probs=43.5

Q ss_pred             CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCC-cHHHHHHHHHHHHh--CCCcEEEEEEcccCCCch--
Q psy14904        116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIG-CINNALLSLEAINS--RGLKLIGWVANHTQIVDT--  190 (233)
Q Consensus       116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~-~~~~~~~~~~~l~~--~~~~i~GiVlN~~~~~~~--  190 (233)
                      .+.+.++|+||.-.  . .. .........+ .+++|.+.... ++..+...++.+..  .+.++ -+|+||++ -..  
T Consensus        53 ~~~~~l~Dt~G~~~--~-~~-~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~pi-ilv~nK~D-l~~~~  125 (168)
T 1z2a_A           53 DVRLMLWDTAGQEE--F-DA-ITKAYYRGAQ-ACVLVFSTTDRESFEAISSWREKVVAEVGDIPT-ALVQNKID-LLDDS  125 (168)
T ss_dssp             EEEEEEECCTTGGG--T-TC-CCHHHHTTCC-EEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCE-EEEEECGG-GGGGC
T ss_pred             EEEEEEEcCCCcHh--H-HH-HHHHHhcCCC-EEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEECcc-cCccc
Confidence            46789999987431  1 11 1222233332 46666666532 34433333333332  46674 48899998 211  


Q ss_pred             hhhhhhHHHHHhhcCCCce
Q psy14904        191 LFANENYIELTKYLNVTPL  209 (233)
Q Consensus       191 ~~~~~~~~~l~~~~~~pvl  209 (233)
                      ....+..+.+.+..+.+++
T Consensus       126 ~~~~~~~~~~~~~~~~~~~  144 (168)
T 1z2a_A          126 CIKNEEAEGLAKRLKLRFY  144 (168)
T ss_dssp             SSCHHHHHHHHHHHTCEEE
T ss_pred             ccCHHHHHHHHHHcCCeEE
Confidence            1112233444445677666

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=87.28  E-value=0.42  Score=40.37  Aligned_cols=33  Identities=18%  Similarity=0.266  Sum_probs=26.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.+.+.|. +|+|||+++..+|..+   |..+..++
T Consensus       148 ~~~vLL~Gp-pGtGKT~la~aia~~~---~~~~~~v~  180 (389)
T 3vfd_A          148 ARGLLLFGP-PGNGKTMLAKAVAAES---NATFFNIS  180 (389)
T ss_dssp             CSEEEEESS-TTSCHHHHHHHHHHHT---TCEEEEEC
T ss_pred             CceEEEECC-CCCCHHHHHHHHHHhh---cCcEEEee
Confidence            467899998 9999999999887653   66776665

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=87.26  E-value=0.29  Score=38.89  Aligned_cols=35  Identities=17%  Similarity=0.142  Sum_probs=28.0

Q ss_pred             CCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          3 NKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         3 ~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .-+.|++.|||..+|.|+     .+|..|+++|++|.+++
T Consensus        24 ~l~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~   58 (260)
T 3gem_A           24 TLSSAPILITGASQRVGL-----HCALRLLEHGHRVIISY   58 (260)
T ss_dssp             ---CCCEEESSTTSHHHH-----HHHHHHHHTTCCEEEEE
T ss_pred             CCCCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEe
Confidence            334578999999888887     67888999999999986

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=87.22  E-value=0.39  Score=38.11  Aligned_cols=37  Identities=19%  Similarity=0.309  Sum_probs=30.6

Q ss_pred             CCCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          1 MINKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      |+.-+.|++.|||..+|.|+     .+|..|+++|++|.+++
T Consensus         5 m~~l~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~   41 (262)
T 3pk0_A            5 MFDLQGRSVVVTGGTKGIGR-----GIATVFARAGANVAVAG   41 (262)
T ss_dssp             TTCCTTCEEEETTCSSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred             ccCCCCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEe
Confidence            45555689999999888887     57788899999999876

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=87.20  E-value=0.52  Score=35.81  Aligned_cols=23  Identities=30%  Similarity=0.323  Sum_probs=18.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLS   29 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~   29 (233)
                      ...|+|.|. +|+||||+...|..
T Consensus        12 ~~~i~~~G~-~g~GKTsl~~~l~~   34 (218)
T 1nrj_B           12 QPSIIIAGP-QNSGKTSLLTLLTT   34 (218)
T ss_dssp             CCEEEEECS-TTSSHHHHHHHHHH
T ss_pred             CCEEEEECC-CCCCHHHHHHHHhc
Confidence            456888998 99999999876653

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=87.14  E-value=0.56  Score=34.63  Aligned_cols=21  Identities=29%  Similarity=0.317  Sum_probs=17.4

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCAL   27 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~L   27 (233)
                      ...|+|.|. +|+||||+...|
T Consensus        23 ~~~i~v~G~-~~~GKSsli~~l   43 (195)
T 3pqc_A           23 KGEVAFVGR-SNVGKSSLLNAL   43 (195)
T ss_dssp             TCEEEEEEB-TTSSHHHHHHHH
T ss_pred             CeEEEEECC-CCCCHHHHHHHH
Confidence            346888888 999999998766

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=87.13  E-value=0.44  Score=37.81  Aligned_cols=32  Identities=22%  Similarity=0.266  Sum_probs=28.4

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      -|++.|||..+|.|+     .+|..|++.|.+|.+.+
T Consensus         2 nK~vlVTGas~GIG~-----aia~~la~~Ga~V~~~~   33 (247)
T 3ged_A            2 NRGVIVTGGGHGIGK-----QICLDFLEAGDKVCFID   33 (247)
T ss_dssp             CCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEecCCCHHHH-----HHHHHHHHCCCEEEEEe
Confidence            478999999999998     57889999999999987

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=87.11  E-value=0.52  Score=34.74  Aligned_cols=21  Identities=33%  Similarity=0.460  Sum_probs=17.8

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La   28 (233)
                      ..|++.|. +|+||||+...|+
T Consensus         8 ~~i~lvG~-~gvGKStL~~~l~   28 (188)
T 2wjg_A            8 YEIALIGN-PNVGKSTIFNALT   28 (188)
T ss_dssp             EEEEEECS-TTSSHHHHHHHHH
T ss_pred             CEEEEECC-CCCCHHHHHHHHh
Confidence            46888888 8999999987775

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=87.10  E-value=0.48  Score=35.08  Aligned_cols=24  Identities=29%  Similarity=0.295  Sum_probs=20.6

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFK   32 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~   32 (233)
                      ..+|+|. .|+||||+.-.|...|.
T Consensus        28 ~~~i~G~-NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           28 FTAIVGA-NGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             EEEEEEC-TTSSHHHHHHHHHHHTT
T ss_pred             cEEEECC-CCCCHHHHHHHHHHHHc
Confidence            5678887 99999999999988875

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=87.07  E-value=0.32  Score=40.47  Aligned_cols=37  Identities=16%  Similarity=0.342  Sum_probs=28.7

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe-ee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK-PI   44 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d-p~   44 (233)
                      .+.|+|-|. =|+||||++..|+..|...+ +|.+.. |.
T Consensus         7 ~~fI~~EG~-dGaGKTT~~~~La~~L~~~~-~v~~trEPg   44 (334)
T 1p6x_A            7 IVRIYLDGV-YGIGKSTTGRVMASAASGGS-PTLYFPEPM   44 (334)
T ss_dssp             EEEEEEECS-TTSSHHHHHHHHHSGGGCSS-CEEEECCCH
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHHHhccCC-cEEEEeCCC
Confidence            357888888 89999999999999997644 466554 43

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=87.02  E-value=0.45  Score=37.40  Aligned_cols=35  Identities=31%  Similarity=0.432  Sum_probs=29.0

Q ss_pred             CCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          3 NKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         3 ~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .-+.|++.|||..+|.|+     .+|..|+++|.+|.+.+
T Consensus         6 ~l~gk~~lVTGas~gIG~-----a~a~~l~~~G~~V~~~~   40 (248)
T 3op4_A            6 NLEGKVALVTGASRGIGK-----AIAELLAERGAKVIGTA   40 (248)
T ss_dssp             CCTTCEEEESSCSSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred             CCCCCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEe
Confidence            334589999999888886     67888999999998876

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=86.98  E-value=0.5  Score=37.67  Aligned_cols=23  Identities=35%  Similarity=0.431  Sum_probs=19.0

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLS   29 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~   29 (233)
                      ...|++.|. +|+||||+...|..
T Consensus         3 ~~~i~lvG~-~g~GKTTL~n~l~g   25 (271)
T 3k53_A            3 LKTVALVGN-PNVGKTTIFNALTG   25 (271)
T ss_dssp             CEEEEEEEC-SSSSHHHHHHHHHT
T ss_pred             eeEEEEECC-CCCCHHHHHHHHhC
Confidence            356889998 99999999987753

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=86.96  E-value=0.16  Score=36.44  Aligned_cols=24  Identities=13%  Similarity=0.055  Sum_probs=19.0

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      ..+.+.|. +|+|||+++..++...
T Consensus        28 ~~vll~G~-~GtGKt~lA~~i~~~~   51 (143)
T 3co5_A           28 SPVFLTGE-AGSPFETVARYFHKNG   51 (143)
T ss_dssp             SCEEEEEE-TTCCHHHHHGGGCCTT
T ss_pred             CcEEEECC-CCccHHHHHHHHHHhC
Confidence            35788888 9999999887776543

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=86.89  E-value=0.7  Score=40.52  Aligned_cols=33  Identities=24%  Similarity=0.272  Sum_probs=26.1

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.+.+.|. +|+|||+++..++..+   +..+..++
T Consensus       238 ~~~vLL~Gp-pGtGKT~lAraia~~~---~~~fv~vn  270 (489)
T 3hu3_A          238 PRGILLYGP-PGTGKTLIARAVANET---GAFFFLIN  270 (489)
T ss_dssp             CCEEEEECS-TTSSHHHHHHHHHHHC---SSEEEEEE
T ss_pred             CCcEEEECc-CCCCHHHHHHHHHHHh---CCCEEEEE
Confidence            356889988 9999999998887665   66666665

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=86.82  E-value=0.52  Score=34.22  Aligned_cols=21  Identities=33%  Similarity=0.460  Sum_probs=17.5

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La   28 (233)
                      ..|++.|. +|+||||+...|.
T Consensus         4 ~~v~lvG~-~gvGKStL~~~l~   24 (165)
T 2wji_A            4 YEIALIGN-PNVGKSTIFNALT   24 (165)
T ss_dssp             EEEEEECS-TTSSHHHHHHHHH
T ss_pred             cEEEEECC-CCCCHHHHHHHHh
Confidence            35888888 8999999987775

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=86.81  E-value=0.74  Score=37.88  Aligned_cols=30  Identities=23%  Similarity=0.345  Sum_probs=23.1

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG   40 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~   40 (233)
                      -+-+.|+|. +|+||||+|..|    .++|++...
T Consensus       147 g~gvli~G~-sG~GKStlal~l----~~~G~~lv~  176 (312)
T 1knx_A          147 GVGVLLTGR-SGIGKSECALDL----INKNHLFVG  176 (312)
T ss_dssp             TEEEEEEES-SSSSHHHHHHHH----HTTTCEEEE
T ss_pred             CEEEEEEcC-CCCCHHHHHHHH----HHcCCEEEe
Confidence            346888888 999999999765    458987654

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=86.75  E-value=0.51  Score=37.20  Aligned_cols=25  Identities=20%  Similarity=0.207  Sum_probs=21.9

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFK   32 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~   32 (233)
                      .+++|.|. .|+||||+...|+..+.
T Consensus        25 e~~~liG~-nGsGKSTLl~~l~Gl~~   49 (240)
T 2onk_A           25 DYCVLLGP-TGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             SEEEEECC-TTSSHHHHHHHHHTSSC
T ss_pred             EEEEEECC-CCCCHHHHHHHHhCCCC
Confidence            67899999 99999999988887764

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=86.65  E-value=0.83  Score=36.12  Aligned_cols=37  Identities=19%  Similarity=0.222  Sum_probs=31.2

Q ss_pred             CCCCCceeEEEEeCCC--CCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          1 MINKNFLHYFITGTNT--NIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         1 ~~~~~~~~i~i~~~kg--gvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      |++-+-|++.|||..+  |.|+     .+|..|+++|.+|.+.+
T Consensus         1 M~~l~gK~alVTGaa~~~GIG~-----aiA~~la~~Ga~Vvi~~   39 (256)
T 4fs3_A            1 MLNLENKTYVIMGIANKRSIAF-----GVAKVLDQLGAKLVFTY   39 (256)
T ss_dssp             CCCCTTCEEEEECCCSTTCHHH-----HHHHHHHHTTCEEEEEE
T ss_pred             CcCCCCCEEEEECCCCCchHHH-----HHHHHHHHCCCEEEEEE
Confidence            7788889999999654  6775     67889999999999976

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=86.63  E-value=0.62  Score=34.54  Aligned_cols=21  Identities=33%  Similarity=0.371  Sum_probs=17.3

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La   28 (233)
                      ..|+|.|. +|+||||+...|.
T Consensus        49 ~~i~vvG~-~g~GKSsll~~l~   69 (193)
T 2ged_A           49 PSIIIAGP-QNSGKTSLLTLLT   69 (193)
T ss_dssp             CEEEEECC-TTSSHHHHHHHHH
T ss_pred             CEEEEECC-CCCCHHHHHHHHh
Confidence            36888888 8999999987664

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=86.62  E-value=0.47  Score=37.20  Aligned_cols=32  Identities=25%  Similarity=0.383  Sum_probs=27.3

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ||++.|||..+|.|+     .++..|+++|++|.+.+
T Consensus         1 mk~vlVTGas~gIG~-----~~a~~l~~~G~~V~~~~   32 (257)
T 1fjh_A            1 MSIIVISGCATGIGA-----ATRKVLEAAGHQIVGID   32 (257)
T ss_dssp             CCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEe
Confidence            578999999898887     56778889999999876

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=86.57  E-value=0.58  Score=37.41  Aligned_cols=33  Identities=18%  Similarity=0.305  Sum_probs=28.1

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.|++.|||..+|.|+     .++..|+++|++|.+++
T Consensus        21 ~~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~   53 (277)
T 2rhc_B           21 DSEVALVTGATSGIGL-----EIARRLGKEGLRVFVCA   53 (277)
T ss_dssp             TSCEEEEETCSSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEe
Confidence            3479999999999887     57788899999999876

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=86.50  E-value=0.4  Score=46.26  Aligned_cols=28  Identities=14%  Similarity=0.209  Sum_probs=23.3

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFK   32 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~   32 (233)
                      ...+++.|+|. ||+||||+|..++....
T Consensus       145 ~~~~~v~i~G~-gG~GKTtLa~~~~~~~~  172 (1249)
T 3sfz_A          145 GEPGWVTIYGM-AGCGKSVLAAEAVRDHS  172 (1249)
T ss_dssp             TSCEEEEEECS-TTSSHHHHHHHHTCCHH
T ss_pred             CCCCEEEEEeC-CCCCHHHHHHHHhcChh
Confidence            34678999999 99999999988887653

>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A

Probab=86.44  E-value=0.53  Score=40.42  Aligned_cols=37  Identities=19%  Similarity=0.134  Sum_probs=27.2

Q ss_pred             eeEEEEeCCCCCcHHHHH-HHHHHHHHHcCCeeeEEeee
Q psy14904          7 LHYFITGTNTNIGKTIIS-CALLSEFKKRGISCIGMKPI   44 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a-~~La~~l~~~G~~Vl~~dp~   44 (233)
                      +.+.+.+. .|+|||.++ ..+...+...|.+++++=|.
T Consensus         3 ~~~lv~a~-TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt   40 (431)
T 2v6i_A            3 ELTVLDLH-PGAGKTRRVLPQLVREAVKKRLRTVILAPT   40 (431)
T ss_dssp             CEEEEECC-TTSCTTTTHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEEEcC-CCCCHHHHHHHHHHHHHHhCCCCEEEECcH
Confidence            44556665 899999987 44555666789999998653

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=86.42  E-value=0.45  Score=38.60  Aligned_cols=36  Identities=17%  Similarity=0.330  Sum_probs=29.7

Q ss_pred             CCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          2 INKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         2 ~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.-+.|++.|||..+|.|+     .++..|+++|.+|.+++
T Consensus        37 ~~l~~k~vlVTGas~GIG~-----aia~~la~~G~~V~~~~   72 (293)
T 3rih_A           37 FDLSARSVLVTGGTKGIGR-----GIATVFARAGANVAVAA   72 (293)
T ss_dssp             TCCTTCEEEETTTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred             cCCCCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEE
Confidence            3334679999999888887     67788999999999986

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=86.41  E-value=0.78  Score=42.29  Aligned_cols=28  Identities=21%  Similarity=0.262  Sum_probs=24.1

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHc
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKR   34 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~   34 (233)
                      .+.+.++|. +|+|||+++..|+..+...
T Consensus       207 ~~~vlL~G~-~GtGKT~la~~la~~l~~~  234 (758)
T 1r6b_X          207 KNNPLLVGE-SGVGKTAIAEGLAWRIVQG  234 (758)
T ss_dssp             SCEEEEECC-TTSSHHHHHHHHHHHHHHT
T ss_pred             CCCeEEEcC-CCCCHHHHHHHHHHHHHhC
Confidence            456788888 9999999999999999764

>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}

Probab=86.33  E-value=0.52  Score=35.62  Aligned_cols=35  Identities=17%  Similarity=0.135  Sum_probs=25.0

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHc------CCeeeEEee
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKR------GISCIGMKP   43 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~------G~~Vl~~dp   43 (233)
                      .+.+.+. +|+|||+++..++..+..+      +.+++++=|
T Consensus        50 ~~li~~~-tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p   90 (216)
T 3b6e_A           50 NIIICLP-TGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVN   90 (216)
T ss_dssp             CEEEECS-CHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEES
T ss_pred             CEEEEcC-CCCCHHHHHHHHHHHHHhhcccccCCCcEEEEEC
Confidence            4555555 8999999998888765443      568887753

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=86.31  E-value=0.58  Score=33.45  Aligned_cols=20  Identities=15%  Similarity=0.524  Sum_probs=16.7

Q ss_pred             eEEEEeCCCCCcHHHHHHHHH
Q psy14904          8 HYFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La   28 (233)
                      .|+|.|. +|+||||+...|.
T Consensus         6 ~i~v~G~-~~~GKssl~~~l~   25 (168)
T 1u8z_A            6 KVIMVGS-GGVGKSALTLQFM   25 (168)
T ss_dssp             EEEEECS-TTSSHHHHHHHHH
T ss_pred             EEEEECC-CCCCHHHHHHHHH
Confidence            5788888 8999999977665

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=86.26  E-value=0.63  Score=37.32  Aligned_cols=33  Identities=15%  Similarity=0.143  Sum_probs=27.9

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.|++.|||..+|.|+     .+|..|+++|.+|.+++
T Consensus        28 ~~k~~lVTGas~GIG~-----aia~~la~~G~~V~~~~   60 (280)
T 4da9_A           28 ARPVAIVTGGRRGIGL-----GIARALAASGFDIAITG   60 (280)
T ss_dssp             CCCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEecCCCHHHH-----HHHHHHHHCCCeEEEEe
Confidence            3478999999888887     57788889999999876

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=86.26  E-value=0.75  Score=34.73  Aligned_cols=22  Identities=23%  Similarity=0.416  Sum_probs=17.3

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La   28 (233)
                      .-.|+|.|. +|+||||+...|.
T Consensus         9 ~~ki~i~G~-~~~GKTsli~~l~   30 (212)
T 2j0v_A            9 FIKCVTVGD-GAVGKTCMLICYT   30 (212)
T ss_dssp             EEEEEEEES-TTSSHHHHHHHHH
T ss_pred             eEEEEEECC-CCCCHHHHHHHHh
Confidence            345888888 8999999986654

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=86.23  E-value=0.6  Score=36.87  Aligned_cols=33  Identities=12%  Similarity=0.151  Sum_probs=28.6

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.|++.|||..+|.|+     .+|..|+++|.+|.+.+
T Consensus         7 ~gk~~lVTGas~gIG~-----a~a~~l~~~G~~V~~~~   39 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGL-----ATVRRLVEGGAEVLLTG   39 (255)
T ss_dssp             TTCEEEEETCSSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEe
Confidence            4579999999899887     68889999999999876

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=86.22  E-value=0.44  Score=36.80  Aligned_cols=34  Identities=24%  Similarity=0.180  Sum_probs=27.8

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.|++.|||..+|.|+     .++..|+++|++|.+++
T Consensus         3 ~~~k~vlVtGasggiG~-----~~a~~l~~~G~~V~~~~   36 (234)
T 2ehd_A            3 GMKGAVLITGASRGIGE-----ATARLLHAKGYRVGLMA   36 (234)
T ss_dssp             -CCCEEEESSTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred             CCCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEE
Confidence            44578999999888886     67788889999998876

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=86.22  E-value=0.52  Score=37.55  Aligned_cols=37  Identities=22%  Similarity=0.219  Sum_probs=30.1

Q ss_pred             CCCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          1 MINKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      |+.-+.|++.|||..+|.|+     .+|..|+++|.+|.+.+
T Consensus        22 m~~l~gk~vlVTGas~gIG~-----aia~~la~~G~~V~~~~   58 (266)
T 3grp_A           22 MFKLTGRKALVTGATGGIGE-----AIARCFHAQGAIVGLHG   58 (266)
T ss_dssp             TTCCTTCEEEESSTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred             hhccCCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEe
Confidence            34445689999999888886     67888999999998876

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=86.05  E-value=0.51  Score=37.13  Aligned_cols=32  Identities=9%  Similarity=0.030  Sum_probs=27.3

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ||++.|||..+|.|+     .++..|+++|++|.+++
T Consensus         1 Mk~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~   32 (254)
T 1zmt_A            1 MSTAIVTNVKHFGGM-----GSALRLSEAGHTVACHD   32 (254)
T ss_dssp             -CEEEESSTTSTTHH-----HHHHHHHHTTCEEEECC
T ss_pred             CeEEEEeCCCchHHH-----HHHHHHHHCCCEEEEEe
Confidence            578999999999998     57788899999998865

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=86.02  E-value=0.49  Score=37.13  Aligned_cols=26  Identities=19%  Similarity=0.016  Sum_probs=21.6

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFK   32 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~   32 (233)
                      -.+++|.|. .|+||||+...|+..+.
T Consensus        31 Ge~~~iiG~-nGsGKSTLl~~l~Gl~~   56 (235)
T 3tif_A           31 GEFVSIMGP-SGSGKSTMLNIIGCLDK   56 (235)
T ss_dssp             TCEEEEECS-TTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECC-CCCcHHHHHHHHhcCCC
Confidence            457899999 99999999888876654

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=85.98  E-value=0.54  Score=34.62  Aligned_cols=20  Identities=25%  Similarity=0.496  Sum_probs=16.6

Q ss_pred             eEEEEeCCCCCcHHHHHHHHH
Q psy14904          8 HYFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La   28 (233)
                      .|+|.|. +|+||||+...|.
T Consensus         3 ki~v~G~-~~~GKSsli~~l~   22 (190)
T 2cxx_A            3 TIIFAGR-SNVGKSTLIYRLT   22 (190)
T ss_dssp             EEEEEEB-TTSSHHHHHHHHH
T ss_pred             EEEEECC-CCCCHHHHHHHHh
Confidence            4778887 8999999987765

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=85.93  E-value=0.74  Score=37.01  Aligned_cols=29  Identities=24%  Similarity=0.237  Sum_probs=23.1

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcC
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRG   35 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G   35 (233)
                      .+.|.+.|+ +|+|||+++..||..+...|
T Consensus       104 ~n~~~l~Gp-pgtGKt~~a~ala~~~~l~G  132 (267)
T 1u0j_A          104 RNTIWLFGP-ATTGKTNIAEAIAHTVPFYG  132 (267)
T ss_dssp             CCEEEEECS-TTSSHHHHHHHHHHHSSCEE
T ss_pred             CcEEEEECC-CCCCHHHHHHHHHhhhcccc
Confidence            357999998 99999999999988653333

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=85.77  E-value=0.59  Score=37.33  Aligned_cols=33  Identities=12%  Similarity=0.264  Sum_probs=28.1

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.|++.|||..+|.|+     .+|..|+++|.+|.+++
T Consensus        29 ~~k~vlVTGas~GIG~-----aia~~l~~~G~~Vi~~~   61 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGE-----ATVRRLHADGLGVVIAD   61 (281)
T ss_dssp             TTEEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEECCCChHHH-----HHHHHHHHCCCEEEEEe
Confidence            4578999999888886     57788889999999876

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=85.75  E-value=1  Score=39.69  Aligned_cols=36  Identities=19%  Similarity=0.214  Sum_probs=26.0

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHH-HHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALL-SEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La-~~l~~~G~~Vl~~d   42 (233)
                      -.+++|.|. .|+||||++..++ ..+.+.+....+++
T Consensus        39 Ge~~~l~G~-nGsGKSTL~~~~ll~Gl~~~~~g~i~v~   75 (525)
T 1tf7_A           39 GRSTLVSGT-SGTGKTLFSIQFLYNGIIEFDEPGVFVT   75 (525)
T ss_dssp             TSEEEEEES-TTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             CeEEEEEcC-CCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            457899999 9999999999953 33444355566665

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=85.74  E-value=0.66  Score=34.67  Aligned_cols=21  Identities=14%  Similarity=0.360  Sum_probs=17.4

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHH
Q psy14904          8 HYFITGTNTNIGKTIISCALLS   29 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~   29 (233)
                      .++|.|. .|+||||+...|+.
T Consensus        31 kv~lvG~-~g~GKSTLl~~l~~   51 (191)
T 1oix_A           31 KVVLIGD-SGVGKSNLLSRFTR   51 (191)
T ss_dssp             EEEEEEC-TTSSHHHHHHHHHH
T ss_pred             EEEEECc-CCCCHHHHHHHHhc
Confidence            5788888 89999999876653

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=85.67  E-value=0.54  Score=36.55  Aligned_cols=32  Identities=31%  Similarity=0.478  Sum_probs=26.1

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ||++.|||..||.|+     +++..|+++|++|.+++
T Consensus         1 Mk~vlVtGasg~iG~-----~l~~~L~~~g~~V~~~~   32 (255)
T 2dkn_A            1 MSVIAITGSASGIGA-----ALKELLARAGHTVIGID   32 (255)
T ss_dssp             -CEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred             CcEEEEeCCCcHHHH-----HHHHHHHhCCCEEEEEe
Confidence            568999999888887     55677888999999886

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=85.66  E-value=0.67  Score=33.07  Aligned_cols=20  Identities=15%  Similarity=0.506  Sum_probs=16.4

Q ss_pred             eEEEEeCCCCCcHHHHHHHHH
Q psy14904          8 HYFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La   28 (233)
                      .|+|.|. +|+||||+...|.
T Consensus         5 ~i~v~G~-~~~GKSsli~~l~   24 (167)
T 1kao_A            5 KVVVLGS-GGVGKSALTVQFV   24 (167)
T ss_dssp             EEEEECC-TTSSHHHHHHHHH
T ss_pred             EEEEECC-CCCCHHHHHHHHH
Confidence            4788887 8999999976665

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=85.64  E-value=0.69  Score=37.13  Aligned_cols=25  Identities=16%  Similarity=0.400  Sum_probs=20.9

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHH
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKK   33 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~   33 (233)
                      +++|.|. .|+||||+.-.|+....-
T Consensus         4 ~v~lvG~-nGaGKSTLln~L~g~~~~   28 (270)
T 3sop_A            4 NIMVVGQ-SGLGKSTLVNTLFKSQVS   28 (270)
T ss_dssp             EEEEEES-SSSSHHHHHHHHHHHHC-
T ss_pred             EEEEECC-CCCCHHHHHHHHhCCCCC
Confidence            5889998 899999999888887743

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=85.63  E-value=0.5  Score=36.75  Aligned_cols=26  Identities=19%  Similarity=-0.015  Sum_probs=21.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFK   32 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~   32 (233)
                      -.+++|.|. .|+||||+...|+..+.
T Consensus        30 Ge~~~iiG~-nGsGKSTLl~~l~Gl~~   55 (224)
T 2pcj_A           30 GEFVSIIGA-SGSGKSTLLYILGLLDA   55 (224)
T ss_dssp             TCEEEEEEC-TTSCHHHHHHHHTTSSC
T ss_pred             CCEEEEECC-CCCCHHHHHHHHhcCCC
Confidence            357899999 99999999988876654

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=85.59  E-value=0.53  Score=36.98  Aligned_cols=26  Identities=27%  Similarity=0.319  Sum_probs=22.0

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFK   32 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~   32 (233)
                      -.+++|.|. .|+||||+...|+..+.
T Consensus        31 Ge~~~i~G~-nGsGKSTLl~~l~Gl~~   56 (237)
T 2cbz_A           31 GALVAVVGQ-VGCGKSSLLSALLAEMD   56 (237)
T ss_dssp             TCEEEEECS-TTSSHHHHHHHHTTCSE
T ss_pred             CCEEEEECC-CCCCHHHHHHHHhcCCC
Confidence            457899999 89999999988887764

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=85.55  E-value=0.75  Score=35.67  Aligned_cols=36  Identities=14%  Similarity=0.302  Sum_probs=28.8

Q ss_pred             CCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          2 INKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         2 ~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.-+.|++.|||..+|.|+     .++..|+++|++|.+++
T Consensus         3 ~~l~~k~vlITGasggiG~-----~~a~~l~~~G~~V~~~~   38 (244)
T 3d3w_A            3 LFLAGRRVLVTGAGKGIGR-----GTVQALHATGARVVAVS   38 (244)
T ss_dssp             CCCTTCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred             cccCCcEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEe
Confidence            3334578999999888887     56778889999998875

>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*

Probab=85.55  E-value=0.82  Score=40.83  Aligned_cols=39  Identities=26%  Similarity=0.334  Sum_probs=31.9

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHc----CCeeeEEeeee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKR----GISCIGMKPIA   45 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~----G~~Vl~~dp~~   45 (233)
                      +.-+.|+|. +|+|||+....|...|+.+    ..++.++||-.
T Consensus       214 ~pHlLIaG~-TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg  256 (574)
T 2iut_A          214 MPHLLVAGT-TGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM  256 (574)
T ss_dssp             SCCEEEECC-TTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred             CCeeEEECC-CCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence            567899998 9999999999999988865    34788888653

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=85.54  E-value=0.63  Score=33.45  Aligned_cols=20  Identities=15%  Similarity=0.346  Sum_probs=16.7

Q ss_pred             eEEEEeCCCCCcHHHHHHHHH
Q psy14904          8 HYFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La   28 (233)
                      .|+|.|. +|+||||+...|.
T Consensus         5 ~i~v~G~-~~~GKssli~~l~   24 (172)
T 2erx_A            5 RVAVFGA-GGVGKSSLVLRFV   24 (172)
T ss_dssp             EEEEECC-TTSSHHHHHHHHH
T ss_pred             EEEEECC-CCCCHHHHHHHHH
Confidence            4788887 9999999987765

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=85.53  E-value=0.63  Score=37.99  Aligned_cols=30  Identities=23%  Similarity=0.260  Sum_probs=23.7

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.+.|+|. .|+||||+...++..+   +  +.+++
T Consensus        32 ~~v~i~G~-~G~GKT~Ll~~~~~~~---~--~~~~~   61 (350)
T 2qen_A           32 PLTLLLGI-RRVGKSSLLRAFLNER---P--GILID   61 (350)
T ss_dssp             SEEEEECC-TTSSHHHHHHHHHHHS---S--EEEEE
T ss_pred             CeEEEECC-CcCCHHHHHHHHHHHc---C--cEEEE
Confidence            56888888 9999999998887654   3  66666

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=85.52  E-value=0.56  Score=37.10  Aligned_cols=33  Identities=18%  Similarity=0.216  Sum_probs=27.6

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..|++.|||..+|.|+     .++..|+++|++|.+++
T Consensus        28 ~~k~vlITGas~gIG~-----~la~~l~~~G~~V~~~~   60 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGA-----AIARKLGSLGARVVLTA   60 (262)
T ss_dssp             TTCEEEESSTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEECCCChHHH-----HHHHHHHHCCCEEEEEE
Confidence            4578999999888886     56788899999998876

>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23

Probab=85.51  E-value=1  Score=35.96  Aligned_cols=30  Identities=13%  Similarity=0.154  Sum_probs=23.5

Q ss_pred             eCCCCCcHHHHHHHHHHHHHHcCC-eeeEEe
Q psy14904         13 GTNTNIGKTIISCALLSEFKKRGI-SCIGMK   42 (233)
Q Consensus        13 ~~kggvGKTt~a~~La~~l~~~G~-~Vl~~d   42 (233)
                      ....|+|||.++..++..+..+|. +++++=
T Consensus       134 ~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~  164 (282)
T 1rif_A          134 NLPTSAGRSLIQALLARYYLENYEGKILIIV  164 (282)
T ss_dssp             CCCTTSCHHHHHHHHHHHHHHHCSSEEEEEC
T ss_pred             EcCCCCCcHHHHHHHHHHHHHcCCCeEEEEE
Confidence            344899999999888887766655 888874

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=85.48  E-value=0.64  Score=35.95  Aligned_cols=33  Identities=21%  Similarity=0.275  Sum_probs=27.8

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ++|++.|||..+|.|+     .++..|+++|++|.+.+
T Consensus         1 ~~k~vlITGas~gIG~-----~ia~~l~~~G~~V~~~~   33 (235)
T 3l77_A            1 EMKVAVITGASRGIGE-----AIARALARDGYALALGA   33 (235)
T ss_dssp             CCCEEEEESCSSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEe
Confidence            3688999999888876     67888889999998876

>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19

Probab=85.43  E-value=0.84  Score=35.69  Aligned_cols=31  Identities=26%  Similarity=0.275  Sum_probs=23.0

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEee
Q psy14904          9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGMKP   43 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp   43 (233)
                      +.+++. .|+|||.++..++..+   +.+++++=|
T Consensus       111 ~ll~~~-tG~GKT~~a~~~~~~~---~~~~liv~P  141 (237)
T 2fz4_A          111 GCIVLP-TGSGKTHVAMAAINEL---STPTLIVVP  141 (237)
T ss_dssp             EEEEES-SSTTHHHHHHHHHHHS---CSCEEEEES
T ss_pred             EEEEeC-CCCCHHHHHHHHHHHc---CCCEEEEeC
Confidence            555555 7999999998776554   778888753

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=85.43  E-value=0.75  Score=36.96  Aligned_cols=33  Identities=27%  Similarity=0.379  Sum_probs=28.0

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.|++.|||..+|.|+     .++..|+++|++|.+++
T Consensus        15 ~gk~vlVTGas~gIG~-----~~a~~L~~~G~~V~~~~   47 (291)
T 3rd5_A           15 AQRTVVITGANSGLGA-----VTARELARRGATVIMAV   47 (291)
T ss_dssp             TTCEEEEECCSSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEeCCCChHHH-----HHHHHHHHCCCEEEEEE
Confidence            4579999999888886     67788899999999876

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=85.37  E-value=0.46  Score=37.93  Aligned_cols=34  Identities=21%  Similarity=0.401  Sum_probs=28.4

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.|++.|||..+|.|+     +++..|+++|++|.+.+
T Consensus         3 ~~~k~vlVTGas~gIG~-----~~a~~l~~~G~~V~~~~   36 (281)
T 3m1a_A            3 ESAKVWLVTGASSGFGR-----AIAEAAVAAGDTVIGTA   36 (281)
T ss_dssp             -CCCEEEETTTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred             CCCcEEEEECCCChHHH-----HHHHHHHHCCCEEEEEe
Confidence            34689999999898887     67788899999998876

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=85.34  E-value=0.5  Score=38.33  Aligned_cols=37  Identities=24%  Similarity=0.253  Sum_probs=28.8

Q ss_pred             CCCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          1 MINKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      |+.-+.|++.|||..+|.|+     .++..|+++|++|.+++
T Consensus        21 m~~l~~k~vlVTGas~gIG~-----aia~~L~~~G~~V~~~~   57 (297)
T 1xhl_A           21 MARFSGKSVIITGSSNGIGR-----SAAVIFAKEGAQVTITG   57 (297)
T ss_dssp             --CCTTCEEEETTCSSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred             ccCCCCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEe
Confidence            34334578999999888887     57788899999999876

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=85.32  E-value=0.59  Score=36.83  Aligned_cols=34  Identities=15%  Similarity=-0.007  Sum_probs=25.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG   40 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~   40 (233)
                      -.+++|.|. .|+||||+...|+..+.-..-+|.+
T Consensus        28 Ge~~~i~G~-nGsGKSTLl~~l~Gl~~p~~G~i~~   61 (243)
T 1mv5_A           28 NSIIAFAGP-SGGGKSTIFSLLERFYQPTAGEITI   61 (243)
T ss_dssp             TEEEEEECC-TTSSHHHHHHHHTTSSCCSBSCEEE
T ss_pred             CCEEEEECC-CCCCHHHHHHHHhcCCCCCCcEEEE
Confidence            457899999 8999999999888876533224544

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=85.32  E-value=0.72  Score=36.86  Aligned_cols=33  Identities=21%  Similarity=0.258  Sum_probs=28.6

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.|++.|||..+|.|+     .+|..|+++|.+|.+++
T Consensus        14 ~gk~~lVTGas~gIG~-----a~a~~la~~G~~V~~~~   46 (280)
T 3pgx_A           14 QGRVAFITGAARGQGR-----SHAVRLAAEGADIIACD   46 (280)
T ss_dssp             TTCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEe
Confidence            4579999999888886     67888999999999986

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=85.31  E-value=0.47  Score=45.66  Aligned_cols=36  Identities=14%  Similarity=0.138  Sum_probs=26.7

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHH--HHH-cCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSE--FKK-RGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~--l~~-~G~~Vl~~d   42 (233)
                      .+++.|.|. ||+||||++..++..  .+. ....+..++
T Consensus       150 ~RVV~IvGm-GGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs  188 (1221)
T 1vt4_I          150 AKNVLIDGV-LGSGKTWVALDVCLSYKVQCKMDFKIFWLN  188 (1221)
T ss_dssp             SCEEEECCS-TTSSHHHHHHHHHHHCHHHHHHSSCEEEEE
T ss_pred             CeEEEEEcC-CCccHHHHHHHHHHhhHHHHhCCCcEEEEE
Confidence            578999999 999999999988853  332 244566665

>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A*

Probab=85.31  E-value=0.38  Score=41.62  Aligned_cols=30  Identities=23%  Similarity=0.198  Sum_probs=26.2

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGIS   37 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~   37 (233)
                      +.++|.|||+   -|||||+.-|+..|.+.|+.
T Consensus        99 ~~~vI~VTGT---nGKTTT~~~l~~iL~~~g~~  128 (454)
T 2am1_A           99 TVDVFAVTGS---NGKTTTKDMLAHLLSTRYKT  128 (454)
T ss_dssp             CCEEEEEECC---CSSSCHHHHHHHHHTTTSCE
T ss_pred             CCCEEEEeCC---CCcHHHHHHHHHHHHhcCCE
Confidence            4679999988   68999999999999999953

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=85.31  E-value=0.75  Score=33.33  Aligned_cols=22  Identities=23%  Similarity=0.525  Sum_probs=17.8

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALLS   29 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~   29 (233)
                      ..|+|.|. +|+||||+...|..
T Consensus        16 ~~i~v~G~-~~~GKSsli~~l~~   37 (179)
T 1z0f_A           16 FKYIIIGD-MGVGKSCLLHQFTE   37 (179)
T ss_dssp             EEEEEECS-TTSSHHHHHHHHHH
T ss_pred             eEEEEECC-CCCCHHHHHHHHHc
Confidence            46888887 99999999877653

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=85.30  E-value=0.27  Score=40.50  Aligned_cols=24  Identities=21%  Similarity=0.254  Sum_probs=20.9

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFK   32 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~   32 (233)
                      .+.+.|. +|+|||+++..++..+.
T Consensus        47 ~vLl~G~-~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           47 GVLVFGD-RGTGKSTAVRALAALLP   70 (350)
T ss_dssp             CEEEECC-GGGCTTHHHHHHHHHSC
T ss_pred             eEEEECC-CCccHHHHHHHHHHhCc
Confidence            4888888 99999999999998774

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=85.28  E-value=2.8  Score=35.94  Aligned_cols=87  Identities=15%  Similarity=-0.057  Sum_probs=45.7

Q ss_pred             CeEEEeccCcccCccCCCCch---HHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhh
Q psy14904        118 DVIILEGIGGFSVPFHDNENS---ADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFAN  194 (233)
Q Consensus       118 D~vlID~~~g~~~p~~~~~~~---~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~  194 (233)
                      .+.|+||||.....-......   ...... ..-+++|.+.+  ........++.+++.+.+++ +|+||++ .......
T Consensus        84 ~l~liDTpG~~d~~~l~~~~~~~~~~~l~~-aD~vllVvD~~--~~~~~~~~l~~l~~~~~piI-vV~NK~D-l~~~~~~  158 (423)
T 3qq5_A           84 PVTLVDTPGLDDVGELGRLRVEKARRVFYR-ADCGILVTDSA--PTPYEDDVVNLFKEMEIPFV-VVVNKID-VLGEKAE  158 (423)
T ss_dssp             EEEEEECSSTTCCCTTCCCCHHHHHHHHTS-CSEEEEECSSS--CCHHHHHHHHHHHHTTCCEE-EECCCCT-TTTCCCT
T ss_pred             eEEEEECcCCCcccchhHHHHHHHHHHHhc-CCEEEEEEeCC--ChHHHHHHHHHHHhcCCCEE-EEEeCcC-CCCccHH
Confidence            689999987542111111111   111222 23467777763  22334556666777788855 8899998 3222222


Q ss_pred             hhHHHHHhhcCCCce
Q psy14904        195 ENYIELTKYLNVTPL  209 (233)
Q Consensus       195 ~~~~~l~~~~~~pvl  209 (233)
                      +..+.+++.++.+++
T Consensus       159 ~~~~~l~~~~g~~v~  173 (423)
T 3qq5_A          159 ELKGLYESRYEAKVL  173 (423)
T ss_dssp             HHHHHSSCCTTCCCC
T ss_pred             HHHHHHHHHcCCCEE
Confidence            344455555566655

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=85.28  E-value=3.5  Score=34.83  Aligned_cols=66  Identities=17%  Similarity=0.093  Sum_probs=37.9

Q ss_pred             CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCc-HHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904        116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGC-INNALLSLEAINSRGLKLIGWVANHTQ  186 (233)
Q Consensus       116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~-~~~~~~~~~~l~~~~~~i~GiVlN~~~  186 (233)
                      .+.+.++|+||.-.  +.  ......+... .-+++|.++..+. ..++...+..++..+.+-+-+|+||++
T Consensus        74 ~~~~~iiDtPGh~~--~~--~~~~~~~~~~-D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~D  140 (403)
T 3sjy_A           74 LRRISFIDAPGHEV--LM--ATMLSGAALM-DGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVD  140 (403)
T ss_dssp             EEEEEEEECCCCGG--GH--HHHHHHHTTC-SEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGG
T ss_pred             cceEEEEECCCcHH--HH--HHHHHHHhhC-CEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECcc
Confidence            36799999987521  10  0111122222 3467777776553 555555666666555543558899998

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=85.21  E-value=0.39  Score=38.29  Aligned_cols=34  Identities=18%  Similarity=0.217  Sum_probs=28.7

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      -+.|++.|||..+|.|+     .+|..|+++|.+|.+.+
T Consensus        26 l~gk~vlVTGas~gIG~-----aia~~la~~G~~V~~~~   59 (266)
T 3uxy_A           26 FEGKVALVTGAAGGIGG-----AVVTALRAAGARVAVAD   59 (266)
T ss_dssp             CTTCEEEESSTTSHHHH-----HHHHHHHHTTCEEEECS
T ss_pred             CCCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEe
Confidence            34579999999888887     67888999999999876

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=85.20  E-value=0.52  Score=36.27  Aligned_cols=27  Identities=22%  Similarity=0.164  Sum_probs=22.3

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHH-cC
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKK-RG   35 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~-~G   35 (233)
                      .+++|.|. .|+||||+...|+.. .- .|
T Consensus        23 e~~~liG~-nGsGKSTLl~~l~Gl-~p~~G   50 (208)
T 3b85_A           23 TIVFGLGP-AGSGKTYLAMAKAVQ-ALQSK   50 (208)
T ss_dssp             SEEEEECC-TTSSTTHHHHHHHHH-HHHTT
T ss_pred             CEEEEECC-CCCCHHHHHHHHhcC-CCcCC
Confidence            47889998 899999999988887 53 45

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=85.19  E-value=0.87  Score=40.15  Aligned_cols=39  Identities=21%  Similarity=0.355  Sum_probs=30.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHc----CCeeeEEeeee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKR----GISCIGMKPIA   45 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~----G~~Vl~~dp~~   45 (233)
                      +..+.|+|. +|+||||+...|...|..+    ..++.++||-.
T Consensus       167 ~pHlLIaG~-TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~  209 (512)
T 2ius_A          167 MPHLLVAGT-TGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM  209 (512)
T ss_dssp             SCSEEEECC-TTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred             CceEEEECC-CCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence            567899998 9999999999988877654    34677788653

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=85.14  E-value=0.75  Score=34.42  Aligned_cols=22  Identities=23%  Similarity=0.430  Sum_probs=17.4

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La   28 (233)
                      .-.|+|.|. +|+||||+...|.
T Consensus         8 ~~ki~v~G~-~~~GKSsli~~l~   29 (203)
T 1zbd_A            8 MFKILIIGN-SSVGKTSFLFRYA   29 (203)
T ss_dssp             EEEEEEECS-TTSSHHHHHHHHH
T ss_pred             eeEEEEECC-CCCCHHHHHHHHh
Confidence            345888888 8999999887664

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=85.12  E-value=0.64  Score=36.32  Aligned_cols=37  Identities=22%  Similarity=0.251  Sum_probs=29.9

Q ss_pred             CCCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          1 MINKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      |..-+.|++.|||..+|.|+     .++..|+++|++|.+.+
T Consensus         1 m~~l~~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~   37 (246)
T 2ag5_A            1 MGRLDGKVIILTAAAQGIGQ-----AAALAFAREGAKVIATD   37 (246)
T ss_dssp             CCTTTTCEEEESSTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred             CCCCCCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEE
Confidence            44445679999999888886     57788889999999876

>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}

Probab=85.10  E-value=1  Score=41.10  Aligned_cols=37  Identities=30%  Similarity=0.343  Sum_probs=26.5

Q ss_pred             eeEEEEeCCCCCcHHHHHHHH-HHHHHHcCCeeeEEeee
Q psy14904          7 LHYFITGTNTNIGKTIISCAL-LSEFKKRGISCIGMKPI   44 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~L-a~~l~~~G~~Vl~~dp~   44 (233)
                      +.+.|++. +|+|||+.+.-. ...+.++|.+++++-|.
T Consensus        47 ~~~lv~ap-TGsGKT~~~~l~il~~~~~~~~~il~i~P~   84 (715)
T 2va8_A           47 NRLLLTSP-TGSGKTLIAEMGIISFLLKNGGKAIYVTPL   84 (715)
T ss_dssp             CCEEEECC-TTSCHHHHHHHHHHHHHHHSCSEEEEECSC
T ss_pred             CcEEEEcC-CCCcHHHHHHHHHHHHHHHCCCeEEEEeCc
Confidence            45666666 899999998444 34556678899998653

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=85.09  E-value=0.73  Score=36.13  Aligned_cols=35  Identities=23%  Similarity=0.290  Sum_probs=29.4

Q ss_pred             CCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          3 NKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         3 ~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +-+.|++.|||..+|.|+     .++..|+++|.+|.+.+
T Consensus         3 ~l~gk~vlVTGas~gIG~-----a~a~~l~~~G~~V~~~~   37 (247)
T 3rwb_A            3 RLAGKTALVTGAAQGIGK-----AIAARLAADGATVIVSD   37 (247)
T ss_dssp             TTTTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEC
T ss_pred             CcCCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEe
Confidence            345689999999898887     67889999999999875

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=85.08  E-value=0.49  Score=37.35  Aligned_cols=35  Identities=20%  Similarity=0.274  Sum_probs=28.6

Q ss_pred             CCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          3 NKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         3 ~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..++|++.|||..+|.|+     .++..|+++|++|.+++
T Consensus         4 ~~~~k~vlVTGas~gIG~-----~~a~~l~~~G~~v~~~~   38 (264)
T 3i4f_A            4 GRFVRHALITAGTKGLGK-----QVTEKLLAKGYSVTVTY   38 (264)
T ss_dssp             --CCCEEEETTTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred             ccccCEEEEeCCCchhHH-----HHHHHHHHCCCEEEEEc
Confidence            446789999999888886     67888899999999874

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=85.05  E-value=0.65  Score=39.03  Aligned_cols=23  Identities=13%  Similarity=0.290  Sum_probs=19.4

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHH
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La   28 (233)
                      ++..|.+.|+ ||+||||++..+-
T Consensus        32 ~~~killlG~-~~SGKST~~kq~~   54 (362)
T 1zcb_A           32 RLVKILLLGA-GESGKSTFLKQMR   54 (362)
T ss_dssp             CCEEEEEECS-TTSSHHHHHHHHH
T ss_pred             CccEEEEECC-CCCcHHHHHHHHH
Confidence            3556889998 9999999998883

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=84.99  E-value=0.77  Score=35.31  Aligned_cols=22  Identities=18%  Similarity=0.294  Sum_probs=17.8

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La   28 (233)
                      ...|+|.|. +|+||||+...|.
T Consensus        29 ~~kI~vvG~-~~vGKSsLin~l~   50 (228)
T 2qu8_A           29 KKTIILSGA-PNVGKSSFMNIVS   50 (228)
T ss_dssp             SEEEEEECS-TTSSHHHHHHHHT
T ss_pred             CCEEEEECC-CCCCHHHHHHHHh
Confidence            456888888 8999999887654

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=84.97  E-value=0.75  Score=34.28  Aligned_cols=20  Identities=30%  Similarity=0.383  Sum_probs=16.8

Q ss_pred             eEEEEeCCCCCcHHHHHHHHH
Q psy14904          8 HYFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La   28 (233)
                      .|++.|. +|+||||+...|.
T Consensus        25 ki~~vG~-~~vGKSsli~~l~   44 (190)
T 1m2o_B           25 KLLFLGL-DNAGKTTLLHMLK   44 (190)
T ss_dssp             EEEEEES-TTSSHHHHHHHHH
T ss_pred             EEEEECC-CCCCHHHHHHHHh
Confidence            5788888 8999999987665

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=84.96  E-value=0.79  Score=40.03  Aligned_cols=24  Identities=25%  Similarity=0.400  Sum_probs=20.8

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      +.+.+.|. +|+|||+++..++..+
T Consensus        50 ~gvLL~Gp-pGtGKT~Laraia~~~   73 (476)
T 2ce7_A           50 KGILLVGP-PGTGKTLLARAVAGEA   73 (476)
T ss_dssp             SEEEEECC-TTSSHHHHHHHHHHHH
T ss_pred             CeEEEECC-CCCCHHHHHHHHHHHc
Confidence            56889998 9999999999998755

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=84.96  E-value=0.64  Score=36.80  Aligned_cols=24  Identities=17%  Similarity=0.151  Sum_probs=20.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSE   30 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~   30 (233)
                      -.+++|.|. .|+||||+...|+..
T Consensus        29 Ge~~~l~G~-nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           29 GEVHALMGP-NGAGKSTLGKILAGD   52 (250)
T ss_dssp             TCEEEEECS-TTSSHHHHHHHHHTC
T ss_pred             CCEEEEECC-CCCCHHHHHHHHhCC
Confidence            457899999 899999999888765

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=84.88  E-value=0.6  Score=37.28  Aligned_cols=26  Identities=19%  Similarity=-0.019  Sum_probs=22.0

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFK   32 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~   32 (233)
                      -.+++|.|. .|+||||+...|+..+.
T Consensus        32 Ge~~~liG~-nGsGKSTLlk~l~Gl~~   57 (262)
T 1b0u_A           32 GDVISIIGS-SGSGKSTFLRCINFLEK   57 (262)
T ss_dssp             TCEEEEECC-TTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECC-CCCCHHHHHHHHhcCCC
Confidence            457899999 99999999988887664

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=84.86  E-value=0.73  Score=37.94  Aligned_cols=29  Identities=31%  Similarity=0.462  Sum_probs=22.7

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCI   39 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl   39 (233)
                      -+.++++|. +|+||||++..|..    +|++..
T Consensus       144 g~~vl~~G~-sG~GKSt~a~~l~~----~g~~lv  172 (314)
T 1ko7_A          144 GVGVLITGD-SGIGKSETALELIK----RGHRLV  172 (314)
T ss_dssp             TEEEEEEES-TTSSHHHHHHHHHH----TTCEEE
T ss_pred             CEEEEEEeC-CCCCHHHHHHHHHh----cCCcee
Confidence            457889998 99999999887754    577644

>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}

Probab=84.83  E-value=1.3  Score=39.38  Aligned_cols=35  Identities=17%  Similarity=0.155  Sum_probs=27.4

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHc---------CCeeeEEee
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKR---------GISCIGMKP   43 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~---------G~~Vl~~dp   43 (233)
                      .+.++.. .|+|||.++..++..+.+.         +.+|+++=|
T Consensus       200 ~~ll~~~-TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P  243 (590)
T 3h1t_A          200 RSLITMA-TGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLAD  243 (590)
T ss_dssp             EEEEEEC-TTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC
T ss_pred             ceEEEec-CCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeC
Confidence            3555555 7999999999999988774         478888765

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=84.82  E-value=0.57  Score=37.30  Aligned_cols=37  Identities=24%  Similarity=0.234  Sum_probs=29.3

Q ss_pred             CCCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          1 MINKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      |..-+.|++.|||..+|.|+     .++..|+++|++|.+++
T Consensus         1 m~~~~~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~   37 (278)
T 1spx_A            1 MTRFAEKVAIITGSSNGIGR-----ATAVLFAREGAKVTITG   37 (278)
T ss_dssp             -CTTTTCEEEETTTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred             CCCCCCCEEEEeCCCchHHH-----HHHHHHHHCCCEEEEEe
Confidence            44444578999999899887     56788889999998876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	233
d1byia_	224	c.37.1.10 (A:) Dethiobiotin synthetase {Escherichi	4e-29

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} Length = 224

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

 Score =  107 bits (266), Expect = 4e-29
 Identities = 79/225 (35%), Positives = 111/225 (49%), Gaps = 5/225 (2%)

Query: 9   YFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKY 68
           YF+TGT+T +GKT+ SCALL   K  G    G KP+ASG   + K          L  + 
Sbjct: 4   YFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASG---SEKTPEGLRNSDALALQR 60

Query: 69  SNSLYEFTKLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGF 128
           ++SL      +NPY F  P SP+  S  E R I +  +      L    D +++EG GG+
Sbjct: 61  NSSLQLDYATVNPYTFAEPTSPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGGW 120

Query: 129 SVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIV 188
             P  D    AD   +  LP+ILV+ +K+GCIN+A+L+ + I   GL L GWVAN     
Sbjct: 121 FTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPP 180

Query: 189 DTLFANENYIELTKYLNVTPLGRIPYLYNL-NINLISHYLDFSSL 232
               A E    LT+ +    LG IP+L           Y++ + L
Sbjct: 181 GKRHA-EYMTTLTRMIPAPLLGEIPWLAENPENAATGKYINLALL 224

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	233
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	100.0
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	99.93
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	99.91
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	99.89
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	99.88
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	99.74
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	99.65
d2qy9a2	211	GTPase domain of the signal recognition particle r	99.33
d1vmaa2	213	GTPase domain of the signal recognition particle r	99.32
d1okkd2	207	GTPase domain of the signal recognition particle r	99.3
d1ls1a2	207	GTPase domain of the signal sequence recognition p	99.29
d1j8yf2	211	GTPase domain of the signal sequence recognition p	99.21
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	98.67
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	98.43
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.41
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	98.26
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	98.14
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	98.01
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.98
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.76
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.72
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	97.62
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	97.54
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.53
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	97.47
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	97.43
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.31
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.31
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.29
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	97.25
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.25
d2g0ta1	338	Hypothetical protein TM0796 {Thermotoga maritima [	97.2
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.18
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.18
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.15
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.12
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.12
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	97.02
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.99
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.96
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.95
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.88
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.88
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.87
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.71
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.66
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.66
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.61
d1e8ca3	234	UDP-N-acetylmuramyl tripeptide synthetase MurE {Es	96.58
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.57
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.53
d1s1ma2	266	CTP synthase PyrG, N-terminal domain {Escherichia	96.52
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.49
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	96.45
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.42
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.39
d1eg7a_	549	Formyltetrahydrofolate synthetase {Moorella thermo	96.36
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.34
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.3
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.28
d1vcoa2	272	CTP synthase PyrG, N-terminal domain {Thermus ther	96.28
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.25
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	96.19
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	96.14
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.11
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.09
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.05
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.01
d2gc6a2	296	Folylpolyglutamate synthetase {Lactobacillus casei	95.99
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.99
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	95.97
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.97
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	95.89
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	95.88
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.8
d1j6ua3	207	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	95.79
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	95.79
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.74
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	95.7
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	95.67
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.67
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	95.64
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.63
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	95.59
d2jfga3	204	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	95.59
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	95.5
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.44
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.38
d1gg4a4	214	UDP-murNac-tripeptide D-alanyl-D-alanine-adding en	95.36
d1p3da3	215	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	95.35
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	95.33
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.32
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	95.32
d1o5za2	296	Folylpolyglutamate synthetase {Thermotoga maritima	95.21
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	95.19
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.18
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	95.17
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.17
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	95.13
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.04
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.99
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	94.88
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	94.84
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	94.78
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	94.76
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	94.7
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	94.41
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	94.39
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	94.25
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.24
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	94.22
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	94.17
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	94.16
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	94.16
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	94.15
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.14
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	94.13
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	94.1
d1g5ta_	157	ATP:corrinoid adenosyltransferase CobA {Salmonella	94.1
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	94.08
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	94.04
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	94.01
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	93.98
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	93.97
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	93.97
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	93.88
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	93.83
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	93.36
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	93.31
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	93.24
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	93.23
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	92.93
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	92.79
d2vo1a1	273	CTP synthase PyrG, N-terminal domain {Human (Homo	92.76
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	92.74
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	92.72
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	92.68
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.62
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	92.43
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	92.37
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	92.26
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	92.23
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	92.08
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	91.57
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	91.56
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	91.4
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	91.34
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	91.28
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	91.21
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	91.2
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	91.16
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	90.77
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	90.7
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	90.14
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	90.06
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	89.9
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	89.86
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	89.74
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	89.63
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	89.6
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	89.58
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	89.32
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	89.15
d2fh5b1	207	Signal recognition particle receptor beta-subunit	88.79
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	88.71
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	88.41
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	88.38
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	88.28
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	88.2
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	87.85
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	87.82
d1nrjb_	209	Signal recognition particle receptor beta-subunit	87.8
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	87.42
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	87.4
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	87.34
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	87.3
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	87.19
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	86.83
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	86.71
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	86.55
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	86.54
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	86.51
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	86.46
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	86.35
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	86.34
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	86.25
d2awna2	232	Maltose transport protein MalK, N-terminal domain	86.24
d1g2912	240	Maltose transport protein MalK, N-terminal domain	85.98
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	85.87
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	85.85
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	85.63
d1rzua_	477	Glycogen synthase 1, GlgA {Agrobacterium tumefacie	85.55
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	85.14
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	85.09
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	84.76
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	84.54
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	84.46
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	84.44
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	84.37
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	84.25
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	84.15
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	84.15
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	83.93
d1tf5a3	273	Translocation ATPase SecA, nucleotide-binding doma	83.86
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	83.83
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	83.79
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	83.78
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	83.75
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	83.74
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	83.74
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	83.71
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	83.67
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	83.55
d1rifa_	282	DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]	83.51
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	83.4
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	83.4
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	83.35
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	83.32
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	83.18
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	83.12
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	83.1
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	83.05
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	83.01
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	82.96
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	82.95
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	82.94
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	82.83
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	82.81
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	82.79
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	82.78
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	82.77
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	82.67
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	82.56
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	82.51
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	82.45
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	82.4
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	82.39
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	82.32
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	82.3
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	82.25
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	82.17
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	82.16
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	82.03
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	81.91
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	81.89
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	81.86
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	81.69
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	81.62
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	81.6
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	81.45
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	81.31
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	81.3
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	81.21
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	81.19
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	81.0
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	80.87
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	80.81
d1xpua3	289	Transcription termination factor Rho, ATPase domai	80.74
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	80.64
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	80.51
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	80.5
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	80.43
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	80.43
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	80.19
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	80.15
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	80.1

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.8e-32  Score=216.58  Aligned_cols=223  Identities=35%  Similarity=0.552  Sum_probs=174.8

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeec
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFK   85 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~   85 (233)
                      .|.|+|+|+.+||||||+|+|||.+|+++|+||+++||+.++.....  .+....+...+....+..... ....+....
T Consensus         1 ~~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~d~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   77 (224)
T d1byia_           1 SKRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTP--EGLRNSDALALQRNSSLQLDY-ATVNPYTFA   77 (224)
T ss_dssp             CEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECSEEESCBCCT--TSCBCHHHHHHHHTCSSCCCH-HHHCSEEES
T ss_pred             CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECccccCCCCCC--CCcchhHHHHHHHhhccCccc-ccccccccc
Confidence            37899999988999999999999999999999999998877655332  233334555555555543322 222333344


Q ss_pred             CCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHH
Q psy14904         86 YPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALL  165 (233)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~  165 (233)
                      ....+......+........+.+.+.++...+|++++|++++...+.......+++......++++|+.........+..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~~~~~~~~~~~~~  157 (224)
T d1byia_          78 EPTSPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAML  157 (224)
T ss_dssp             SCSCHHHHHHHHTCCCCHHHHHHHHHHHHTTCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHH
T ss_pred             cchhhhhhhhhhhhhhhHHHHHHHHhhhhhccceEeecccccccccccccchhhcccccccceeeEEEeeccchhHHHHH
Confidence            33333333344455566788999999999999999999998887665566778889888899999999999988888888


Q ss_pred             HHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCC-hhhhhhhcCCCCC
Q psy14904        166 SLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLN-INLISHYLDFSSL  232 (233)
Q Consensus       166 ~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~-~~~~~~~~~~~~~  232 (233)
                      ..+.+++.+..+.|+|+|+++ ++...+++..+.+++.+|+|++|.||+.++.. ..+.++|||++++
T Consensus       158 ~~~~~~~~~~~~~gvv~N~~~-~~~~~~~~~~~~l~~~~gi~vlG~IP~~~~~~e~~~~~~~l~l~~l  224 (224)
T d1byia_         158 TAQVIQHAGLTLAGWVANDVT-PPGKRHAEYMTTLTRMIPAPLLGEIPWLAENPENAATGKYINLALL  224 (224)
T ss_dssp             HHHHHHHTTCCEEEEEEECCS-SCCTTHHHHHHHHHHHSSSCEEEEECCCTTCTTCCCCGGGCCGGGC
T ss_pred             HHHHHhccCCccEEEEEeCcC-CCchHHHHHHHHHHHHhCCCEEEECCCCCCCccccccccccCcCcC
Confidence            999999999999999999998 55556678889999999999999999988875 4589999998864

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.93  E-value=1.5e-25  Score=178.06  Aligned_cols=195  Identities=17%  Similarity=0.156  Sum_probs=125.7

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCC--CCCccchHHHHHHHHhCCCccccccee---
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNK--NKIWFNEDVNLLNKYSNSLYEFTKLIN---   80 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~--~~~l~~~d~~~~~~~~~~~~~~~~~~~---   80 (233)
                      ||+|+|+|.||||||||+|+|||.+|+++|+||+++|   .+++....  .-++...... ............+.+.   
T Consensus         1 ~kvIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD---~D~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~   76 (232)
T d1hyqa_           1 VRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVD---ADITMANLELILGMEGLPVT-LQNVLAGEARIDEAIYVGP   76 (232)
T ss_dssp             CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEE---CCCSSSSHHHHTTCCCCCCC-HHHHHTTSSCGGGGCEECG
T ss_pred             CEEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEe---CCCCCCCHHHHhCCCcCcch-hhhhhccccccccccccCC
Confidence            7999999999999999999999999999999999998   33221100  0000000000 0111111111101110   


Q ss_pred             --eeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCC
Q psy14904         81 --PYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIG  158 (233)
Q Consensus        81 --~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~  158 (233)
                        ...+..  +..... .  .....+.+.+.++.+++.||+||||+|+++...     ...  +......+++|+.++..
T Consensus        77 ~~~~~l~~--~~~~~~-~--~~~~~~~l~~~l~~l~~~~D~viiD~~~~~~~~-----~~~--~l~~ad~v~~v~~~~~~  144 (232)
T d1hyqa_          77 GGVKVVPA--GVSLEG-L--RKANPEKLEDVLTQIMESTDILLLDAPAGLERS-----AVI--AIAAAQELLLVVNPEIS  144 (232)
T ss_dssp             GGCEEEEC--CSCHHH-H--HHHCHHHHHHHHHHHHHTCSEEEEECCSSSSHH-----HHH--HHHHSSEEEEEECSSHH
T ss_pred             ccceeEee--eccccc-c--cccchhhHHHHHHHHhhccceeeecccccccch-----hHH--Hhhhhheeeeecccccc
Confidence              011111  111110 0  112457889999999999999999999876421     111  22223478899999887


Q ss_pred             cHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCC
Q psy14904        159 CINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLN  219 (233)
Q Consensus       159 ~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~  219 (233)
                      ++.++...++.+++.+.+++|+|+||++ +..  .+...+.+++.++.|+++.||+++.+.
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~iv~N~~~-~~~--~~~~~~~i~~~~~~~~~~~IP~d~~~~  202 (232)
T d1hyqa_         145 SITDGLKTKIVAERLGTKVLGVVVNRIT-TLG--IEMAKNEIEAILEAKVIGLIPEDPEVR  202 (232)
T ss_dssp             HHHHHHHHHHHHHHHTCEEEEEEEEEEC-TTT--HHHHHHHHHHHTTSCEEEEEECCHHHH
T ss_pred             chhhhhhhhhhhhhcccccccccccccc-ccc--ccchhhhHHhhcCCeEEEECCCCHHHH
Confidence            8887777788888888999999999997 422  234456788889999999999997654

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.91  E-value=2.1e-24  Score=171.65  Aligned_cols=198  Identities=17%  Similarity=0.157  Sum_probs=124.0

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccce-----
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLI-----   79 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~-----   79 (233)
                      |.|+|+|+|.||||||||+|+|||.+|+++|++|+++|.....+.... ..+....+........+ ....++..     
T Consensus         1 m~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D~~~~~l~~-~l~~~~~~~~~~~~l~~-~~~~~~~~~~~~~   78 (237)
T d1g3qa_           1 MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSL-VLGVDDPDVTLHDVLAG-EANVEDAIYMTQF   78 (237)
T ss_dssp             CCEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSCCHHH-HTTCCCCSSCHHHHHTT-SSCGGGGCEECSS
T ss_pred             CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChhH-HhCCCCcccchhhhccC-CCcHHHhhhcccc
Confidence            568999999999999999999999999999999999993211111000 00000001000111111 11110001     


Q ss_pred             -eeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCC
Q psy14904         80 -NPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIG  158 (233)
Q Consensus        80 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~  158 (233)
                       ......  .+......   .....+.+.+.++.+++.||+|||||++++...     ....+.  ..+.+++|+.++..
T Consensus        79 ~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~l~~~~d~IiiD~~~~~~~~-----~~~~l~--~aD~viiv~~~~~~  146 (237)
T d1g3qa_          79 DNVYVLP--GAVDWEHV---LKADPRKLPEVIKSLKDKFDFILIDCPAGLQLD-----AMSAML--SGEEALLVTNPEIS  146 (237)
T ss_dssp             TTEEEEC--CCCSHHHH---HHCCGGGHHHHHHTTGGGCSEEEEECCSSSSHH-----HHHHHT--TCSEEEEEECSCHH
T ss_pred             ccccccc--cccchhhh---hhhhhHHHHHHHHHHHhcCCEEEEccccccccc-----chhhhh--hhhcccccccccce
Confidence             111111  11111111   112346788888899999999999999886421     111111  23468899999888


Q ss_pred             cHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCC
Q psy14904        159 CINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLN  219 (233)
Q Consensus       159 ~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~  219 (233)
                      ++.++...++.+++.++++.|+|+||++ +...  +...+..++..+.++++.||+++.+.
T Consensus       147 s~~~~~~~~~~~~~~~~~~~giv~N~~~-~~~~--~~~~~~~~~~~~~~~~~~IP~d~~v~  204 (237)
T d1g3qa_         147 CLTDTMKVGIVLKKAGLAILGFVLNRYG-RSDR--DIPPEAAEDVMEVPLLAVIPEDPAIR  204 (237)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEEEEEEET-SCTT--CCCHHHHHHHHCSCEEEEEECCHHHH
T ss_pred             ecchhhHHHHHHhhhhhhhhhhhhcccc-cccc--hhhhHHHHhhcCceEEEEeCCCHHHH
Confidence            8888888888889999999999999997 4321  12234556667899999999998763

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.89  E-value=1.2e-22  Score=166.70  Aligned_cols=201  Identities=13%  Similarity=0.124  Sum_probs=110.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCC--CCc-cchHH-HHHHHHhCCCccc-cccee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKN--KIW-FNEDV-NLLNKYSNSLYEF-TKLIN   80 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~--~~l-~~~d~-~~~~~~~~~~~~~-~~~~~   80 (233)
                      ||+|+|.| ||||||||+|+|||.+|+++|+||+++|   .+++.....  .+. ..... ..... .+...+. .+.+.
T Consensus         2 Mr~Iaisg-KGGVGKTT~a~NLA~~LA~~G~rVLlID---~DpQ~~st~~~l~~~~~~~~~~~~~~-~~~~~d~~~~~v~   76 (289)
T d2afhe1           2 MRQCAIYG-KGGIGKSTTTQNLVAALAEMGKKVMIVG---CDPKADSTRLILHSKAQNTIMEMAAE-AGTVEDLELEDVL   76 (289)
T ss_dssp             CEEEEEEE-CTTSSHHHHHHHHHHHHHHTTCCEEEEE---ECSSSCSSHHHHCCSSCCBHHHHHHT-TSSGGGCCHHHHC
T ss_pred             ccEEEEEC-CCCCCHHHHHHHHHHHHHHCCCCEEEEe---cCCCCCcchhhcCCCCCCchhhhhhc-cCcccccccceeE
Confidence            78899955 9999999999999999999999999998   444321100  000 00011 11111 1100000 00000


Q ss_pred             eeee----cCCCChhhhhhhcC--C-CCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEE
Q psy14904         81 PYLF----KYPISPYTSSNLEN--R-IINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVI  153 (233)
Q Consensus        81 ~~~~----~~~~~~~~~~~~~~--~-~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~  153 (233)
                      ...+    ..|...... ....  . ......+.+.+..+.++||||+|||||++....    ..+-++......+++++
T Consensus        77 ~~~~~~i~~i~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~D~iiiD~pp~~~~~~----~~~~~~~~~a~~vlv~~  151 (289)
T d2afhe1          77 KAGYGGVKCVESGGPEP-GVGCAGRGVITAINFLEEEGAYEDDLDFVFYDVLGDVVCGG----FAMPIRENKAQEIYIVC  151 (289)
T ss_dssp             EECGGGCEEEECCCCCT-TTCCHHHHHHHHHHHHHHTTCSSTTCSEEEEEEECSSCCTT----TTHHHHTTCCCEEEEEE
T ss_pred             ecccccceeeccCCchh-hhhhhhcchHHHHHHHHHHHHhhccCCeEeeccCCccCHHH----HHHHHHhhccceeeccc
Confidence            0000    000000000 0000  0 001123444555566899999999998864321    12222222223567777


Q ss_pred             cCCCCcHHHHHHHHHHH---H-hCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCC
Q psy14904        154 DLKIGCINNALLSLEAI---N-SRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLN  219 (233)
Q Consensus       154 ~~~~~~~~~~~~~~~~l---~-~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~  219 (233)
                      ..+..++..+...++.+   . +.+.++.|+|+|+++ ..  ...+..+.+++.+|.++++.||++..+.
T Consensus       152 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~-~~--~~~~~~~~~~~~~g~~vl~~IP~~~~v~  218 (289)
T d2afhe1         152 SGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRN-TD--REDELIIALANKLGTQMIHFVPRDNVVQ  218 (289)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCC-CT--THHHHHHHHHHHHTSCEEEEECCCHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhhhhcccccccceeehhhc-ch--hhHHHHHHHHHHcCCeEEEEEeccHHHH
Confidence            77765555444433333   2 567899999999987 32  2345667788888999999999987654

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=99.88  E-value=5.3e-23  Score=167.07  Aligned_cols=201  Identities=15%  Similarity=0.117  Sum_probs=114.1

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCC--C-CCccch-HHHHHHHHhC-CCc-cc--c-
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNK--N-KIWFNE-DVNLLNKYSN-SLY-EF--T-   76 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~--~-~~l~~~-d~~~~~~~~~-~~~-~~--~-   76 (233)
                      ||+|+|+| ||||||||+|+|||.+|+++|+||+++|   .+++....  . ...... -...+..... ... .+  . 
T Consensus         1 mr~Iai~g-KGGvGKTT~a~nLA~~LA~~G~rVllID---~D~q~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~   76 (269)
T d1cp2a_           1 MRQVAIYG-KGGIGKSTTTQNLTSGLHAMGKTIMVVG---CDPKADSTRLLLGGLAQKSVLDTLREEGEDVELDSILKEG   76 (269)
T ss_dssp             CEEEEEEE-CTTSSHHHHHHHHHHHHHTTTCCEEEEE---ECTTSCSSHHHHTSCCCCCHHHHHHHHGGGCCHHHHCEEC
T ss_pred             CCEEEEEC-CCcCCHHHHHHHHHHHHHhCCCcEEEEe---cCCCCCchhhhhCCCcccchhhhhhhcccccccceEEEec
Confidence            78999998 9999999999999999999999999999   43332110  0 000001 1111111111 000 00  0 


Q ss_pred             -cceeeeeecCCCChhhhhhhcCCCCCHHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcC
Q psy14904         77 -KLINPYLFKYPISPYTSSNLENRIINTSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDL  155 (233)
Q Consensus        77 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~  155 (233)
                       ..+........ .+.......+ ......+.+.+..+.+.||||+||||+++..    ......++......+++|+..
T Consensus        77 ~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~l~~~l~~l~~~~D~viiD~p~~~~~----~~~~~~~~~~~ad~vliv~~~  150 (269)
T d1cp2a_          77 YGGIRCVESGGP-EPGVGCAGRG-IITSINMLEQLGAYTDDLDYVFYDVLGDVVC----GGFAMPIREGKAQEIYIVASG  150 (269)
T ss_dssp             GGGCEEEECCCC-CTTSSCHHHH-HHHHHHHHHHTTCCCTTCSEEEEEEECSSCS----TTTTHHHHTTSCCEEEEEECS
T ss_pred             CCceEEeccCcc-hhhhhhcccc-hHHHHHHHHHHHHhhccCCEEEeccCCccch----hHHHHHHHhhccCceeeccch
Confidence             00110000000 0000000000 0112345556666778999999999987642    111222222223457778888


Q ss_pred             CCCcHHHHHHH---HHHHH-hCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCCCCCC
Q psy14904        156 KIGCINNALLS---LEAIN-SRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYLYNLN  219 (233)
Q Consensus       156 ~~~~~~~~~~~---~~~l~-~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~~~l~  219 (233)
                      +..++..+...   ++.+. ..+.++.|+|+|+++ ...  ..+..+.+.+.++.++++.||+++.+.
T Consensus       151 ~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~-~~~--~~~~~~~~~~~~~~~~~~~IP~d~~i~  215 (269)
T d1cp2a_         151 EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRK-VAN--EYELLDAFAKELGSQLIHFVPRSPMVT  215 (269)
T ss_dssp             SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCS-SSC--CHHHHHHHHHHHTCCEEEEECCCHHHH
T ss_pred             hhhHHHHHHHHHHHHHhhccccceeccceEEeeec-CCC--ccchhhhhHhhcCCeEEEEEecCHHHH
Confidence            76666544444   43332 467788999999987 432  235677777788999999999997664

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=1.1e-17  Score=136.46  Aligned_cols=39  Identities=21%  Similarity=0.184  Sum_probs=35.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904        148 PIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ  186 (233)
Q Consensus       148 ~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~  186 (233)
                      .+++|+.++..++.++...++.++..++++.|+|+||+.
T Consensus       200 ~~~lVt~pe~~~~~~~~r~~~~l~~~gi~~~~vVvN~v~  238 (296)
T d1ihua1         200 RLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVL  238 (296)
T ss_dssp             EEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEEC
T ss_pred             eeeEecCcchhHHHHHHHHHHHHHhcCCCceEEEEcCCc
Confidence            378899998888888999999999999999999999986

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=1.3e-15  Score=123.21  Aligned_cols=68  Identities=13%  Similarity=0.120  Sum_probs=48.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchh-----------hhhhhHHHHHhhcCCCceEecCCCC
Q psy14904        148 PIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTL-----------FANENYIELTKYLNVTPLGRIPYLY  216 (233)
Q Consensus       148 ~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~-----------~~~~~~~~l~~~~~~pvlg~IP~~~  216 (233)
                      .+++|+.++..++.++...++.+.+.+.++.|+|.|++. +...           .....++.+++.++.++. .||..+
T Consensus       185 ~~vlV~~p~~~~~~~~~r~~~~l~~~~~~~~~iV~N~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~-~vP~~~  262 (279)
T d1ihua2         185 KVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSL-SIADTRSPLLRMRAQQELPQIESVKRQHASRVA-LVPVLA  262 (279)
T ss_dssp             EEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEES-TTSCCCCHHHHHHHHHHHHHHHHHHTTTCSSEE-EEECCS
T ss_pred             cceEeccccHhHHHHHHHHHHHHHhcCCCccEEEEcCCc-cccccccHHHHHHHHHHHHHHHHHHHhcCCcEE-EecCCC
Confidence            378888888778888888888888999999999999986 3211           122334556666666664 677765


Q ss_pred             C
Q psy14904        217 N  217 (233)
Q Consensus       217 ~  217 (233)
                      .
T Consensus       263 ~  263 (279)
T d1ihua2         263 S  263 (279)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=3e-11  Score=93.10  Aligned_cols=170  Identities=15%  Similarity=0.139  Sum_probs=96.2

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeec
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFK   85 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~   85 (233)
                      ..+|+++|. .||||||+.+.||..+.++|++|+++-   .+...        ....+.++.+...-     .+..+...
T Consensus         9 p~vi~lvGp-tGvGKTTTiAKLA~~~~~~g~kV~lit---~Dt~R--------~gA~eQL~~~a~~l-----~v~~~~~~   71 (211)
T d2qy9a2           9 PFVILMVGV-NGVGKTTTIGKLARQFEQQGKSVMLAA---GDTFR--------AAAVEQLQVWGQRN-----NIPVIAQH   71 (211)
T ss_dssp             TEEEEEECC-TTSCHHHHHHHHHHHHHTTTCCEEEEC---CCTTC--------HHHHHHHHHHHHHT-----TCCEECCS
T ss_pred             CEEEEEECC-CCCCHHHHHHHHHHHHHHCCCcEEEEe---ccccc--------ccchhhhhhhhhhc-----CCcccccc
Confidence            468999999 999999999999999999999999985   32221        12344444443210     01111111


Q ss_pred             CCCChhhhhhhcCCCCCH-HHHHHHHHHh-hcCCCeEEEeccCcccCccCCCCchHHHH---HHh-------CCCEEEEE
Q psy14904         86 YPISPYTSSNLENRIINT-SHIINCYNYL-SNLTDVIILEGIGGFSVPFHDNENSADLA---EKL-------GLPIILVI  153 (233)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~-~~l~~~~~~l-~~~~D~vlID~~~g~~~p~~~~~~~~~l~---~~~-------~~~vllV~  153 (233)
                      .+             .+. ..+.+.++.. .++||+|||||+|.....   .....++.   ...       ...+++|.
T Consensus        72 ~~-------------~d~~~~l~~~~~~a~~~~~d~ilIDTaGr~~~d---~~~~~el~~l~~~~~~~~~~~p~~~~LVl  135 (211)
T d2qy9a2          72 TG-------------ADSASVIFDAIQAAKARNIDVLIADTAGRLQNK---SHLMEELKKIVRVMKKLDVEAPHEVMLTI  135 (211)
T ss_dssp             TT-------------CCHHHHHHHHHHHHHHTTCSEEEECCCCCGGGH---HHHHHHHHHHHHHHTTTCTTCCSEEEEEE
T ss_pred             cC-------------CCHHHHHHHHHHHHHHcCCCEEEeccCCCcccc---HHHHHHHHHHHHHHhhhcccCcceeeeeh
Confidence            11             111 2234444432 468999999998764311   11112221   111       24688888


Q ss_pred             cCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCceEecCCC
Q psy14904        154 DLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPLGRIPYL  215 (233)
Q Consensus       154 ~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvlg~IP~~  215 (233)
                      ++..+ .++.....+..+  .+++-|+|++|.+ .. ...-..+.... .++.|+. ++-..
T Consensus       136 ~a~~~-~~~~~~~~~~~~--~~~~~~lIlTKlD-e~-~~~G~~l~~~~-~~~~Pi~-~i~~G  190 (211)
T d2qy9a2         136 DASTG-QNAVSQAKLFHE--AVGLTGITLTKLD-GT-AKGGVIFSVAD-QFGIPIR-YIGVG  190 (211)
T ss_dssp             EGGGT-HHHHHHHHHHHH--HSCCCEEEEECCT-TC-TTTTHHHHHHH-HHCCCEE-EEECS
T ss_pred             hcccC-cchHHHHhhhhh--ccCCceEEEeecC-CC-CCccHHHHHHH-HHCCCEE-EEeCC
Confidence            88653 233333444333  3456799999999 42 22344555444 4588875 44333

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=99.32  E-value=3.4e-11  Score=93.00  Aligned_cols=166  Identities=14%  Similarity=0.158  Sum_probs=93.3

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeee
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLF   84 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~   84 (233)
                      +..+|+++|. .||||||+++.||..+.++|++|+++-   .+...        ....+.++.+...-     .+ ++..
T Consensus        10 ~p~vi~lvGp-tGvGKTTTiAKLAa~~~~~~~kV~lit---~Dt~R--------~gA~eQL~~~a~~l-----~i-~~~~   71 (213)
T d1vmaa2          10 PPFVIMVVGV-NGTGKTTSCGKLAKMFVDEGKSVVLAA---ADTFR--------AAAIEQLKIWGERV-----GA-TVIS   71 (213)
T ss_dssp             SCEEEEEECC-TTSSHHHHHHHHHHHHHHTTCCEEEEE---ECTTC--------HHHHHHHHHHHHHH-----TC-EEEC
T ss_pred             CCEEEEEECC-CCCCHHHHHHHHHHHHHHCCCceEEEe---ecccc--------cchhHHHHHHhhhc-----Cc-cccc
Confidence            4568999999 999999999999999999999999986   33322        12344455443210     01 1111


Q ss_pred             cCCCChhhhhhhcCCCCCHHHHH-HHH-HHhhcCCCeEEEeccCcccCccCCCCchHHH---HHHh-------CCCEEEE
Q psy14904         85 KYPISPYTSSNLENRIINTSHII-NCY-NYLSNLTDVIILEGIGGFSVPFHDNENSADL---AEKL-------GLPIILV  152 (233)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~l~~~~D~vlID~~~g~~~p~~~~~~~~~l---~~~~-------~~~vllV  152 (233)
                      ...            ..+...+. ... ....++||+|||||+|....  . .....++   ....       ...+++|
T Consensus        72 ~~~------------~~d~~~~~~~~~~~~~~~~~d~ilIDTaGr~~~--d-~~~~~el~~~~~~~~~~~~~~p~~~~LV  136 (213)
T d1vmaa2          72 HSE------------GADPAAVAFDAVAHALARNKDVVIIDTAGRLHT--K-KNLMEELRKVHRVVKKKIPDAPHETLLV  136 (213)
T ss_dssp             CST------------TCCHHHHHHHHHHHHHHTTCSEEEEEECCCCSC--H-HHHHHHHHHHHHHGGGTCTTCCSEEEEE
T ss_pred             cCC------------CCcHHHHHHHHHHHHHHcCCCEEEEeccccccc--h-HHHHHHHHHHHhhhhhccccccceeEEe
Confidence            100            01111121 111 22346899999999976421  1 0111111   1111       1347888


Q ss_pred             EcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904        153 IDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL  209 (233)
Q Consensus       153 ~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl  209 (233)
                      .++..+ .+......+..+  .+++-|+|++|.+ .. ...-..+.... .++.|+.
T Consensus       137 l~a~~~-~~~~~~~~~~~~--~~~~~~lI~TKlD-e~-~~~G~~l~~~~-~~~~Pi~  187 (213)
T d1vmaa2         137 IDATTG-QNGLVQAKIFKE--AVNVTGIILTKLD-GT-AKGGITLAIAR-ELGIPIK  187 (213)
T ss_dssp             EEGGGH-HHHHHHHHHHHH--HSCCCEEEEECGG-GC-SCTTHHHHHHH-HHCCCEE
T ss_pred             eccccC-cchhhhhhhhcc--ccCCceEEEeccc-CC-CcccHHHHHHH-HHCCCEE
Confidence            888642 333333444433  3456799999999 32 22344555544 3588875

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=99.30  E-value=4.9e-11  Score=91.77  Aligned_cols=170  Identities=14%  Similarity=0.116  Sum_probs=94.3

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeee
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYL   83 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~   83 (233)
                      .+.++|+++|. +||||||+++.||.++.++|++|+++-   .+...        ....+.++.+..+-     .+ ++ 
T Consensus         4 ~~~~vi~lvGp-tGvGKTTTiaKLA~~~~~~g~kV~lit---~Dt~R--------~gA~eQL~~~a~~l-----~i-~~-   64 (207)
T d1okkd2           4 PKGRVVLVVGV-NGVGKTTTIAKLGRYYQNLGKKVMFCA---GDTFR--------AAGGTQLSEWGKRL-----SI-PV-   64 (207)
T ss_dssp             CSSSEEEEECS-TTSSHHHHHHHHHHHHHTTTCCEEEEC---CCCSS--------TTHHHHHHHHHHHH-----TC-CE-
T ss_pred             CCCEEEEEECC-CCCCHHHHHHHHHHHHHHCCCcEEEEE---ecccc--------ccchhhHhhccccc-----Cc-eE-
Confidence            35679999999 999999999999999999999999975   32322        12344454443210     01 11 


Q ss_pred             ecCCCChhhhhhhcCCCCCH-HHHHHHHHH-hhcCCCeEEEeccCcccCc--cCCCC-chHHHHHH----hCCCEEEEEc
Q psy14904         84 FKYPISPYTSSNLENRIINT-SHIINCYNY-LSNLTDVIILEGIGGFSVP--FHDNE-NSADLAEK----LGLPIILVID  154 (233)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~-l~~~~D~vlID~~~g~~~p--~~~~~-~~~~l~~~----~~~~vllV~~  154 (233)
                      +.....           .+. ..+.+.... ..++||+||||++|....-  +...+ ...+....    ....+++|.+
T Consensus        65 ~~~~~~-----------~d~~~~~~~~~~~~~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~  133 (207)
T d1okkd2          65 IQGPEG-----------TDPAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLD  133 (207)
T ss_dssp             ECCCTT-----------CCHHHHHHHHHHHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE
T ss_pred             EeccCC-----------ccHHHHHHHHHHHHHHCCCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEee
Confidence            111000           111 223333322 2368999999999764210  00000 01111111    1246889988


Q ss_pred             CCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904        155 LKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL  209 (233)
Q Consensus       155 ~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl  209 (233)
                      +..+. ++.....+..+..  ++-|+|++|++ .. ...-..+.... .++.|+.
T Consensus       134 a~~~~-~~~~~~~~~~~~~--~~~~lI~TKlD-et-~~~G~~l~~~~-~~~~Pi~  182 (207)
T d1okkd2         134 AVTGQ-NGLEQAKKFHEAV--GLTGVIVTKLD-GT-AKGGVLIPIVR-TLKVPIK  182 (207)
T ss_dssp             TTBCT-HHHHHHHHHHHHH--CCSEEEEECTT-SS-CCCTTHHHHHH-HHCCCEE
T ss_pred             cccCc-hHHHHHHHhhhcc--CCceEEEeccC-CC-CCccHHHHHHH-HHCCCEE
Confidence            87643 3333344443333  44599999999 32 22344555544 3588874

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=99.29  E-value=1.1e-10  Score=89.94  Aligned_cols=163  Identities=16%  Similarity=0.156  Sum_probs=90.8

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHh---CCCcccccceee
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYS---NSLYEFTKLINP   81 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~~   81 (233)
                      +.++|+++|. +||||||+++.||.+++++|++|+++.   .+...        ....+.++.+.   +.+      +  
T Consensus         9 ~~~vi~lvGp-~GvGKTTTiaKLA~~~~~~g~kV~lit---~Dt~R--------~gA~eQL~~~a~~l~v~------~--   68 (207)
T d1ls1a2           9 DRNLWFLVGL-QGSGKTTTAAKLALYYKGKGRRPLLVA---ADTQR--------PAAREQLRLLGEKVGVP------V--   68 (207)
T ss_dssp             SSEEEEEECC-TTTTHHHHHHHHHHHHHHTTCCEEEEE---CCSSC--------HHHHHHHHHHHHHHTCC------E--
T ss_pred             CCcEEEEECC-CCCCHHHHHHHHHHHHHHCCCcEEEEe---ccccc--------chHHHHHHHHHHhcCCc------c--
Confidence            4568888988 999999999999999999999999987   32221        12334444433   321      1  


Q ss_pred             eeecCCCChhhhhhhcCCCCCHHHHHHHHH--HhhcCCCeEEEeccCcccCccCCCCchHH---HHHHhC-CCEEEEEcC
Q psy14904         82 YLFKYPISPYTSSNLENRIINTSHIINCYN--YLSNLTDVIILEGIGGFSVPFHDNENSAD---LAEKLG-LPIILVIDL  155 (233)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~l~~~~D~vlID~~~g~~~p~~~~~~~~~---l~~~~~-~~vllV~~~  155 (233)
                      +....+             .+...+.....  ...+++|+||||++|....  . .....+   +..... ..+++|.++
T Consensus        69 ~~~~~~-------------~~~~~~~~~~~~~~~~~~~d~vlIDTaGr~~~--d-~~~~~el~~~~~~~~~~~~llv~~a  132 (207)
T d1ls1a2          69 LEVMDG-------------ESPESIRRRVEEKARLEARDLILVDTAGRLQI--D-EPLMGELARLKEVLGPDEVLLVLDA  132 (207)
T ss_dssp             EECCTT-------------CCHHHHHHHHHHHHHHHTCCEEEEECCCCSSC--C-HHHHHHHHHHHHHHCCSEEEEEEEG
T ss_pred             cccccc-------------chhhHHHHHHHHHHhhccCcceeecccccchh--h-hhhHHHHHHHHhhcCCceEEEEecc
Confidence            111111             11222222211  1236899999999976421  1 111222   222222 367788877


Q ss_pred             CCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904        156 KIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL  209 (233)
Q Consensus       156 ~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl  209 (233)
                      ..+ .+. ....+... ..+++-|+|++|++ .. ...-..+.... .++.|+.
T Consensus       133 ~~~-~~~-~~~~~~f~-~~~~~~~~I~TKlD-e~-~~~G~~l~~~~-~~~~Pi~  180 (207)
T d1ls1a2         133 MTG-QEA-LSVARAFD-EKVGVTGLVLTKLD-GD-ARGGAALSARH-VTGKPIY  180 (207)
T ss_dssp             GGT-HHH-HHHHHHHH-HHTCCCEEEEECGG-GC-SSCHHHHHHHH-HHCCCEE
T ss_pred             ccc-hhH-HHHHHHHH-hhCCCCeeEEeecC-cc-ccchHHHHHHH-HHCCCEE
Confidence            543 222 22222221 12456799999998 32 22334455444 4588874

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=99.21  E-value=3.3e-10  Score=87.26  Aligned_cols=168  Identities=15%  Similarity=0.113  Sum_probs=89.5

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeee
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLF   84 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~   84 (233)
                      ...+|+++|+ +|+||||+++-||..+.++|++|.++-   .+...        ....+.++.+..+.     .+ ++..
T Consensus        11 ~p~vi~lvGp-tGvGKTTTiAKLA~~~~~~g~kV~lit---~Dt~R--------~ga~eQL~~~a~~l-----~v-~~~~   72 (211)
T d1j8yf2          11 IPYVIMLVGV-QGTGKATTAGKLAYFYKKKGFKVGLVG---ADVYR--------PAALEQLQQLGQQI-----GV-PVYG   72 (211)
T ss_dssp             SSEEEEEECS-CCC----HHHHHHHHHHHTTCCEEEEE---CCCSS--------HHHHHHHHHHHHHH-----TC-CEEC
T ss_pred             CCEEEEEECC-CCCCHHHHHHHHHHHHHHCCCceEEEE---eeccc--------cchhHHHHHhcccc-----Cc-ceee
Confidence            4568999999 999999999999999999999999986   33322        12344444443210     01 1111


Q ss_pred             cCCCChhhhhhhcCCCCCHHHHHHHHHH-hhcCCCeEEEeccCcccCccCC-CCchHHH---HHHh-CCCEEEEEcCCCC
Q psy14904         85 KYPISPYTSSNLENRIINTSHIINCYNY-LSNLTDVIILEGIGGFSVPFHD-NENSADL---AEKL-GLPIILVIDLKIG  158 (233)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-l~~~~D~vlID~~~g~~~p~~~-~~~~~~l---~~~~-~~~vllV~~~~~~  158 (233)
                      .. ....          ....+.+.+.. ...++|+||||++|..  |... .....++   .... ...+++|.++..+
T Consensus        73 ~~-~~~~----------~~~~~~~a~~~~~~~~~d~IlIDTaGr~--~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~  139 (211)
T d1j8yf2          73 EP-GEKD----------VVGIAKRGVEKFLSEKMEIIIVDTAGRH--GYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG  139 (211)
T ss_dssp             CT-TCCC----------HHHHHHHHHHHHHHTTCSEEEEECCCSC--CTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG
T ss_pred             cc-cchh----------hhHHHHHHHHHhhccCCceEEEecCCcC--ccchhhHHHHHHHHHHhhcCCceEEEEEecccC
Confidence            10 0000          01223333332 3468999999998753  2211 0111222   2222 2357888877653


Q ss_pred             cHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCCCce
Q psy14904        159 CINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNVTPL  209 (233)
Q Consensus       159 ~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~pvl  209 (233)
                      . +.........+..  ++-|+|++|++ .. ...-..+.... .++.|+.
T Consensus       140 ~-~~~~~~~~~~~~~--~~~~lI~TKlD-et-~~~G~~l~~~~-~~~lPi~  184 (211)
T d1j8yf2         140 Q-KAYDLASKFNQAS--KIGTIIITKMD-GT-AKGGGALSAVA-ATGATIK  184 (211)
T ss_dssp             G-GHHHHHHHHHHHC--TTEEEEEECTT-SC-SCHHHHHHHHH-TTTCCEE
T ss_pred             c-chHHHHhhhhccc--CcceEEEeccc-CC-CcccHHHHHHH-HHCcCEE
Confidence            2 2222333333333  45699999999 32 23345555555 4688875

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.67  E-value=3.4e-08  Score=72.67  Aligned_cols=38  Identities=16%  Similarity=0.150  Sum_probs=35.6

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPI   44 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~   44 (233)
                      ||+|.|+|. .|+||||+...|+..|+++|++|.++|-.
T Consensus         1 Mkii~I~G~-~gSGKTTli~~l~~~L~~~g~~v~vik~d   38 (165)
T d1xjca_           1 MNVWQVVGY-KHSGKTTLMEKWVAAAVREGWRVGTVKHH   38 (165)
T ss_dssp             CCEEEEECC-TTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CcEEEEEeC-CCCCHHHHHHHHHHHHHhCCCeEEEEEec
Confidence            789999998 79999999999999999999999999833

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.43  E-value=5e-06  Score=65.94  Aligned_cols=92  Identities=14%  Similarity=0.085  Sum_probs=64.7

Q ss_pred             CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhh
Q psy14904        116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANE  195 (233)
Q Consensus       116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~  195 (233)
                      ++.+-||||||...  +.   ....-+......+++|+++..+--.++....+.+++.+++.+ +++||.+ ........
T Consensus        70 ~~~~n~iDtPG~~d--F~---~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~~~lP~i-~fINKmD-r~~ad~~~  142 (276)
T d2bv3a2          70 DHRINIIDAPGHVD--FT---IEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI-AFANKMD-KTGADLWL  142 (276)
T ss_dssp             TEEEEEECCCSSSS--CS---TTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHHHHTTTCCEE-EEEECTT-STTCCHHH
T ss_pred             CeEEEEecCCchhh--hH---HHHHHHHHhhhheEEeccccCCcchhHHHHHHHHHHcCCCEE-EEEeccc-ccccccch
Confidence            56799999998752  21   122222233346788888887766677888888889999955 7799999 44445678


Q ss_pred             hHHHHHhhcCCCceE-ecCC
Q psy14904        196 NYIELTKYLNVTPLG-RIPY  214 (233)
Q Consensus       196 ~~~~l~~~~~~pvlg-~IP~  214 (233)
                      .++.+++.++.+++. .+|.
T Consensus       143 ~l~ei~~~l~~~~vp~~~Pi  162 (276)
T d2bv3a2         143 VIRTMQERLGARPVVMQLPI  162 (276)
T ss_dssp             HHHHHHHTTCCCEEECEEEE
T ss_pred             hHHHHHHHhCCCeEEEEecc
Confidence            899999999876664 3653

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.41  E-value=1.8e-07  Score=68.37  Aligned_cols=39  Identities=21%  Similarity=0.126  Sum_probs=35.9

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeee
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPI   44 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~   44 (233)
                      |+++|.|+|. +|+||||++..|+..|.++|++|.+++..
T Consensus         1 m~Pvi~itG~-~GSGKTTL~~~L~~~l~~~g~~v~v~~~d   39 (170)
T d1np6a_           1 MIPLLAFAAW-SGTGKTTLLKKLIPALCARGIRPGLIKHT   39 (170)
T ss_dssp             CCCEEEEECC-TTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCEEEEEcC-CCCCHHHHHHHHHHHHHHCCCeEEEeccc
Confidence            5789999999 89999999999999999999999999843

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=98.26  E-value=4.9e-06  Score=67.68  Aligned_cols=37  Identities=24%  Similarity=0.257  Sum_probs=33.8

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +..+|.|||. +|+||||+.-.|+.++..+|++|.++-
T Consensus        53 ~~~~IgitG~-pGaGKSTLi~~l~~~~~~~g~~vavla   89 (327)
T d2p67a1          53 NTLRLGVTGT-PGAGKSTFLEAFGMLLIREGLKVAVIA   89 (327)
T ss_dssp             CSEEEEEEEC-TTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CceEEEeeCC-CCCCHHHHHHHHHHHHHhcCCceeeec
Confidence            4678999999 999999999999999999999988753

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=98.14  E-value=1.7e-05  Score=62.59  Aligned_cols=85  Identities=14%  Similarity=0.008  Sum_probs=57.3

Q ss_pred             CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhh
Q psy14904        116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANE  195 (233)
Q Consensus       116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~  195 (233)
                      ++.+-+|||||...  +   ......+......+++|+++..+-..++....+.+++.+++. -+++||++ .. ....+
T Consensus        66 ~~~~n~iDtPGh~d--F---~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~~~~p~-~i~iNk~D-~~-~~~~~  137 (267)
T d2dy1a2          66 GHRVFLLDAPGYGD--F---VGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPR-MVVVTKLD-KG-GDYYA  137 (267)
T ss_dssp             TEEEEEEECCCSGG--G---HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCE-EEEEECGG-GC-CCHHH
T ss_pred             ccceeEEccCchhh--h---hhhhhhhhcccCceEEEeeccCCccchhHHHHHhhhhccccc-cccccccc-cc-ccchh
Confidence            56689999998752  1   111222223334688888888776667788888888999995 57799998 33 33456


Q ss_pred             hHHHHHhhcCCCce
Q psy14904        196 NYIELTKYLNVTPL  209 (233)
Q Consensus       196 ~~~~l~~~~~~pvl  209 (233)
                      .++.+++.++ ++.
T Consensus       138 ~l~~~~~~lg-~~v  150 (267)
T d2dy1a2         138 LLEDLRSTLG-PIL  150 (267)
T ss_dssp             HHHHHHHHHC-SEE
T ss_pred             hhhhHHHHhc-cCc
Confidence            6777787777 444

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.01  E-value=2.4e-05  Score=63.33  Aligned_cols=39  Identities=26%  Similarity=0.249  Sum_probs=34.8

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE--eee
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGM--KPI   44 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~--dp~   44 (233)
                      +..+|.|||+ +|+||||+.-.|+.++..+|++|.++  ||.
T Consensus        50 ~~~~igitG~-pGaGKSTli~~l~~~~~~~g~~vaViavDps   90 (323)
T d2qm8a1          50 RAIRVGITGV-PGVGKSTTIDALGSLLTAAGHKVAVLAVDPS   90 (323)
T ss_dssp             CSEEEEEECC-TTSCHHHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred             CceEEeeeCC-CCCCHHHHHHHHHHHHhhcCCceeeeecccc
Confidence            4678999999 99999999999999999999999985  543

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.98  E-value=4.2e-06  Score=61.79  Aligned_cols=36  Identities=17%  Similarity=0.277  Sum_probs=33.9

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ||+|.|+|. +|+||||++..|+..|..+|+++..+.
T Consensus         1 mkiivi~G~-~GsGKTT~~~~La~~L~~~~~~~~~~~   36 (194)
T d1nksa_           1 MKIGIVTGI-PGVGKSTVLAKVKEILDNQGINNKIIN   36 (194)
T ss_dssp             CEEEEEEEC-TTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            789999999 899999999999999999999998776

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=1.3e-05  Score=58.56  Aligned_cols=35  Identities=29%  Similarity=0.466  Sum_probs=32.2

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      |.|+|+|. +|+||||++..++..|...|.+|.++.
T Consensus         2 k~v~ItG~-~GtGKTtl~~~i~~~l~~~~~~v~~~~   36 (189)
T d2i3ba1           2 RHVFLTGP-PGVGKTTLIHKASEVLKSSGVPVDGFY   36 (189)
T ss_dssp             CCEEEESC-CSSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             cEEEEECC-CCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence            67999998 999999999999999999999998765

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.72  E-value=1.5e-05  Score=58.32  Aligned_cols=35  Identities=20%  Similarity=0.321  Sum_probs=32.3

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      |+|+|+|. +|+||||++..|+..|..+|.++.++.
T Consensus         2 kiI~i~G~-~GsGKsT~~~~L~~~l~~~~~~~~~~~   36 (190)
T d1khta_           2 KVVVVTGV-PGVGSTTSSQLAMDNLRKEGVNYKMVS   36 (190)
T ss_dssp             CEEEEECC-TTSCHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred             CEEEEECC-CCCCHHHHHHHHHHHHHHcCCCeEEEe
Confidence            68999999 999999999999999999999988764

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=97.62  E-value=0.00033  Score=54.90  Aligned_cols=90  Identities=18%  Similarity=0.212  Sum_probs=58.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeec
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFK   85 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~   85 (233)
                      .++.-|.|. +|+|||++|..++....+.|.+|+++|   +  ..     .+   +..++ +..|+..   +++   .+.
T Consensus        57 g~itei~G~-~~sGKT~l~l~~~~~aqk~g~~v~yiD---t--E~-----~~---~~~~a-~~~Gvd~---d~i---~~~  115 (268)
T d1xp8a1          57 GRITEIYGP-ESGGKTTLALAIVAQAQKAGGTCAFID---A--EH-----AL---DPVYA-RALGVNT---DEL---LVS  115 (268)
T ss_dssp             TSEEEEEES-TTSSHHHHHHHHHHHHHHTTCCEEEEE---S--SC-----CC---CHHHH-HHTTCCG---GGC---EEE
T ss_pred             ceEEEEecC-CccchHHHHHHHHHHHHhCCCEEEEEE---C--Cc-----cC---CHHHH-HHhCCCc---hhE---EEE
Confidence            356677777 999999999999999999999999999   2  21     11   22233 3456542   232   222


Q ss_pred             CCCChhhhhhhcCCCCCHHHHHHHHHHhh--cCCCeEEEeccCccc
Q psy14904         86 YPISPYTSSNLENRIINTSHIINCYNYLS--NLTDVIILEGIGGFS  129 (233)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~--~~~D~vlID~~~g~~  129 (233)
                      .|.             ..+...+.++.+.  ..+++||||+.+.+.
T Consensus       116 ~~~-------------~~E~~~~~~~~l~~~~~~~liIiDSi~al~  148 (268)
T d1xp8a1         116 QPD-------------NGEQALEIMELLVRSGAIDVVVVDSVAALT  148 (268)
T ss_dssp             CCS-------------SHHHHHHHHHHHHTTTCCSEEEEECTTTCC
T ss_pred             cCC-------------CHHHHHHHHHHHHhcCCCcEEEEecccccc
Confidence            221             2234445555553  469999999987765

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=0.00047  Score=53.89  Aligned_cols=36  Identities=19%  Similarity=0.279  Sum_probs=32.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .++..|+|. +|+||||+|+.++...++.|.+|.|+|
T Consensus        54 g~itei~G~-~gsGKTtl~l~~~~~~q~~g~~~vyid   89 (263)
T d1u94a1          54 GRIVEIYGP-ESSGKTTLTLQVIAAAQREGKTCAFID   89 (263)
T ss_dssp             TSEEEEECS-TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             ceEEEEecC-CCcHHHHHHHHHHHHHHcCCCEEEEEc
Confidence            356777777 999999999999999999999999998

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.53  E-value=5.5e-05  Score=54.83  Aligned_cols=36  Identities=28%  Similarity=0.389  Sum_probs=30.3

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG   40 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~   40 (233)
                      ++..+|+++|. +|+||||++..||..|...+.....
T Consensus         4 ~~g~~I~l~G~-~GsGKTTia~~La~~L~~~~~~~~~   39 (183)
T d1m8pa3           4 TQGFTIFLTGY-MNSGKDAIARALQVTLNQQGGRSVS   39 (183)
T ss_dssp             TCCEEEEEECS-TTSSHHHHHHHHHHHHHHHCSSCEE
T ss_pred             CCCeEEEEECC-CCCCHHHHHHHHHHHHhhcCCCchh
Confidence            34568999999 9999999999999999887765443

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.47  E-value=0.0012  Score=49.38  Aligned_cols=67  Identities=12%  Similarity=0.009  Sum_probs=46.0

Q ss_pred             cCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904        115 NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ  186 (233)
Q Consensus       115 ~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~  186 (233)
                      +++.+.||||||...  +.   ...--+.....-+++|+++..|-..++...+..++..|++-+=+++||++
T Consensus        65 ~~~~i~iiDtPGh~d--f~---~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~gi~~iiv~iNK~D  131 (204)
T d2c78a3          65 AKRHYSHVDCPGHAD--YI---KNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVD  131 (204)
T ss_dssp             SSCEEEEEECCCSGG--GH---HHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGG
T ss_pred             CCeEEEEEeCCCchh--hH---HHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEecc
Confidence            467899999998642  11   11111222334688899988776677888888888889875556689998

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.43  E-value=0.00075  Score=52.82  Aligned_cols=90  Identities=14%  Similarity=0.151  Sum_probs=57.2

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHHHhCCCcccccceeeeeec
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNKYSNSLYEFTKLINPYLFK   85 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~   85 (233)
                      .++..+.|. +|+||||+|..++....+.|.+|.++|   +  ..     .+   +..++++ .|+..   +++   .+.
T Consensus        60 g~i~e~~G~-~~~GKT~l~l~~~~~~q~~g~~~vyID---t--E~-----~~---~~e~a~~-~GvD~---d~i---l~~  118 (269)
T d1mo6a1          60 GRVIEIYGP-ESSGKTTVALHAVANAQAAGGVAAFID---A--EH-----AL---DPDYAKK-LGVDT---DSL---LVS  118 (269)
T ss_dssp             SSEEEEECS-SSSSHHHHHHHHHHHHHHTTCEEEEEE---S--SC-----CC---CHHHHHH-HTCCG---GGC---EEE
T ss_pred             ceeEEEecC-CCcHHHHHHHHHHHHHhcCCCEEEEEE---C--Cc-----cC---CHHHHHH-hCCCH---HHe---EEe
Confidence            356677777 999999999999999999999999999   2  21     11   2233333 46532   232   222


Q ss_pred             CCCChhhhhhhcCCCCCHHHHHHHHHHh--hcCCCeEEEeccCccc
Q psy14904         86 YPISPYTSSNLENRIINTSHIINCYNYL--SNLTDVIILEGIGGFS  129 (233)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l--~~~~D~vlID~~~g~~  129 (233)
                      .|.             ..+.+.+.++.+  ....++||||+.+++.
T Consensus       119 ~~~-------------~~E~~~~~~~~l~~~~~~~liIiDSi~al~  151 (269)
T d1mo6a1         119 QPD-------------TGEQALEIADMLIRSGALDIVVIDSVAALV  151 (269)
T ss_dssp             CCS-------------SHHHHHHHHHHHHHTTCEEEEEEECSTTCC
T ss_pred             cCC-------------CHHHHHHHHHHHHhcCCCCEEEEecccccc
Confidence            211             223444455544  3568899999987664

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.31  E-value=5.9e-05  Score=54.29  Aligned_cols=26  Identities=27%  Similarity=0.399  Sum_probs=22.0

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      |.|.|+|+|. +|+||||++..|+..+
T Consensus         1 M~klI~i~G~-~GsGKTTva~~L~~~~   26 (176)
T d2bdta1           1 MKKLYIITGP-AGVGKSTTCKRLAAQL   26 (176)
T ss_dssp             CEEEEEEECS-TTSSHHHHHHHHHHHS
T ss_pred             CCeEEEEECC-CCCCHHHHHHHHHHHc
Confidence            4467888888 9999999999998765

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.31  E-value=0.00016  Score=53.23  Aligned_cols=34  Identities=26%  Similarity=0.351  Sum_probs=31.1

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +|+|+|. +|+||||+|..|+..|...|..+..+.
T Consensus        24 iIgI~G~-~GSGKSTla~~L~~~l~~~~~~~~~~~   57 (198)
T d1rz3a_          24 VLGIDGL-SRSGKTTLANQLSQTLREQGISVCVFH   57 (198)
T ss_dssp             EEEEEEC-TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHhccccccceecc
Confidence            6889999 999999999999999999998887765

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.29  E-value=6.7e-05  Score=53.39  Aligned_cols=29  Identities=21%  Similarity=0.371  Sum_probs=24.6

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISC   38 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~V   38 (233)
                      .|.|+++|. +|+||||+|..||..|   |..+
T Consensus         2 ~k~I~l~G~-~GsGKSTvak~La~~L---~~~~   30 (169)
T d1kaga_           2 KRNIFLVGP-MGAGKSTIGRQLAQQL---NMEF   30 (169)
T ss_dssp             CCCEEEECC-TTSCHHHHHHHHHHHT---TCEE
T ss_pred             CCeEEEECC-CCCCHHHHHHHHHHHh---CCCe
Confidence            467999998 9999999999999887   5554

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.25  E-value=0.00085  Score=51.01  Aligned_cols=64  Identities=17%  Similarity=0.251  Sum_probs=42.6

Q ss_pred             cCCCeEEEeccCcccC-cc-CCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904        115 NLTDVIILEGIGGFSV-PF-HDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ  186 (233)
Q Consensus       115 ~~~D~vlID~~~g~~~-p~-~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~  186 (233)
                      ..+.+.+|||||...- .. ..++..+|       -+++|+++..+--.+....++.+...+.+++ +++||++
T Consensus        68 ~~~~~~~iDtPGh~~f~~~~~~~~~~~D-------~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-ivlNK~D  133 (227)
T d1g7sa4          68 TLPGLFFIDTPGHEAFTTLRKRGGALAD-------LAILIVDINEGFKPQTQEALNILRMYRTPFV-VAANKID  133 (227)
T ss_dssp             TCCEEEEECCCTTSCCTTSBCSSSBSCS-------EEEEEEETTTCCCHHHHHHHHHHHHTTCCEE-EEEECGG
T ss_pred             cccccccccccceecccccchhcccccc-------eEEEEEecccCcccchhHHHHHhhcCCCeEE-EEEECcc
Confidence            3566899999985321 11 11222232       4788888776544556777888888899955 8899998

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.25  E-value=0.00013  Score=55.18  Aligned_cols=39  Identities=21%  Similarity=0.394  Sum_probs=33.6

Q ss_pred             CCCceeEEEEeCCCCCcHHHHHHHHHHHHHH-cCCeeeEEe
Q psy14904          3 NKNFLHYFITGTNTNIGKTIISCALLSEFKK-RGISCIGMK   42 (233)
Q Consensus         3 ~~~~~~i~i~~~kggvGKTt~a~~La~~l~~-~G~~Vl~~d   42 (233)
                      .++..+|.++|. +|+||||+|..|+..|.+ .++.+..+|
T Consensus        21 ~~kg~vIwltGl-sGsGKTTia~~L~~~l~~~~~~~~~~ld   60 (208)
T d1m7ga_          21 NQRGLTIWLTGL-SASGKSTLAVELEHQLVRDRRVHAYRLD   60 (208)
T ss_dssp             TSSCEEEEEECS-TTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred             CCCCeEEEEECC-CCCCHHHHHHHHHHHHHHhcCceEEEEc
Confidence            456779999999 999999999999988864 688888887

>d2g0ta1 c.37.1.10 (A:1-338) Hypothetical protein TM0796 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein TM0796
species: Thermotoga maritima [TaxId: 2336]

Probab=97.20  E-value=0.0015  Score=52.16  Aligned_cols=38  Identities=18%  Similarity=0.183  Sum_probs=35.5

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.+++.+.||.-.+||-|++.-|..++.++|+++.++=
T Consensus       156 ~~~rvl~vGTDca~GK~tTal~l~~~l~~~G~~a~fia  193 (338)
T d2g0ta1         156 KIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLA  193 (338)
T ss_dssp             CSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCcEEEEeccCccccHHHHHHHHHHHHHhCCCCeeEEE
Confidence            57899999999999999999999999999999998864

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.18  E-value=0.0001  Score=53.50  Aligned_cols=26  Identities=23%  Similarity=0.245  Sum_probs=23.6

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      .+|.|+|+|+ +|+||||+|..||..+
T Consensus         6 ~~K~I~i~G~-~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           6 FAKTVAILGG-ESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             TCEEEEEECC-TTSHHHHHHHHHHHHT
T ss_pred             cceEEEEECC-CCCCHHHHHHHHHHHh
Confidence            3689999999 9999999999999876

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.18  E-value=0.00029  Score=52.43  Aligned_cols=34  Identities=24%  Similarity=0.227  Sum_probs=30.1

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +|+++|. +|+||||+|..|+..+...|+++.+++
T Consensus         4 li~l~Gl-pgsGKSTla~~L~~~l~~~~~~~~~~~   37 (213)
T d1bifa1           4 LIVMVGL-PARGKTYISKKLTRYLNFIGVPTREFN   37 (213)
T ss_dssp             EEEEECC-TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHHhcCCCCeEEc
Confidence            4666666 999999999999999999999998886

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.00015  Score=53.28  Aligned_cols=36  Identities=31%  Similarity=0.432  Sum_probs=31.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..+|+++|. +|+||||+|..|+..|...+...-.++
T Consensus        19 g~vI~L~G~-pGSGKTTiAk~La~~l~~~~~~~~~~~   54 (195)
T d1x6va3          19 GCTVWLTGL-SGAGKTTVSMALEEYLVCHGIPCYTLD   54 (195)
T ss_dssp             CEEEEEESS-CHHHHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHHHHHhcCCCccchh
Confidence            458999999 999999999999999999888776654

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.12  E-value=0.00017  Score=51.91  Aligned_cols=29  Identities=34%  Similarity=0.537  Sum_probs=23.9

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeee
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCI   39 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl   39 (233)
                      +.|+|+|. +|+||||+|..||..|   |+++.
T Consensus         5 ~~I~i~G~-pGsGKTTia~~La~~l---~~~~i   33 (173)
T d1rkba_           5 PNILLTGT-PGVGKTTLGKELASKS---GLKYI   33 (173)
T ss_dssp             CCEEEECS-TTSSHHHHHHHHHHHH---CCEEE
T ss_pred             CEEEEECC-CCCCHHHHHHHHHHHH---CCcEE
Confidence            35779999 9999999999998776   66654

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.12  E-value=0.00023  Score=52.70  Aligned_cols=30  Identities=20%  Similarity=0.301  Sum_probs=25.8

Q ss_pred             CCCCCceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          1 MINKNFLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      |-.++.++|+|.|+ +|+||||+|..||..+
T Consensus         1 ~~~~kp~iI~i~G~-pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           1 MEKSKPNVVFVLGG-PGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCCCCCEEEEEEES-TTSSHHHHHHHHHHHH
T ss_pred             CCCCCCcEEEEECC-CCCCHHHHHHHHHHHH
Confidence            45566789999999 9999999999999876

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.00051  Score=51.72  Aligned_cols=37  Identities=16%  Similarity=0.145  Sum_probs=33.4

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.+.|+|.|. -|+||||.+..|+..|..+|++|.+++
T Consensus         2 rG~lI~ieG~-dGsGKsT~~~~L~~~L~~~g~~v~~~~   38 (209)
T d1nn5a_           2 RGALIVLEGV-DRAGKSTQSRKLVEALCAAGHRAELLR   38 (209)
T ss_dssp             CCCEEEEEES-TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CeeEEEEECC-CCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence            4567888899 899999999999999999999998876

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.99  E-value=0.00024  Score=51.52  Aligned_cols=29  Identities=21%  Similarity=0.299  Sum_probs=24.8

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGIS   37 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~   37 (233)
                      |.+.|+++|. +|+||||++..||..|   |++
T Consensus         1 M~~~Iil~G~-~GsGKSTia~~LA~~L---g~~   29 (170)
T d1e6ca_           1 MTEPIFMVGA-RGCGMTTVGRELARAL---GYE   29 (170)
T ss_dssp             CCCCEEEESC-TTSSHHHHHHHHHHHH---TCE
T ss_pred             CCCCEEEECC-CCCCHHHHHHHHHHHh---CCC
Confidence            4567889998 9999999999999888   665

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.96  E-value=0.00024  Score=51.13  Aligned_cols=32  Identities=19%  Similarity=0.187  Sum_probs=25.3

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGM   41 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~   41 (233)
                      .|+|.|+|. +|+||||+|..|+..|   |.+...+
T Consensus         3 ~kiI~l~G~-~GsGKsTva~~L~~~l---~~~~~~~   34 (178)
T d1qhxa_           3 TRMIILNGG-SSAGKSGIVRCLQSVL---PEPWLAF   34 (178)
T ss_dssp             CCEEEEECC-TTSSHHHHHHHHHHHS---SSCEEEE
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHHHc---CCCeEEe
Confidence            358889888 9999999999999887   4444433

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.95  E-value=0.00054  Score=50.98  Aligned_cols=34  Identities=24%  Similarity=0.301  Sum_probs=31.0

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .|+|.|. -|+||||++..|+..|..+|++|.++.
T Consensus         2 lI~ieG~-dGsGKST~~~~L~~~l~~~g~~v~~~~   35 (208)
T d1gsia_           2 LIAIEGV-DGAGKRTLVEKLSGAFRAAGRSVATLA   35 (208)
T ss_dssp             EEEEECS-TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHHHCCCCEEEEe
Confidence            4788888 999999999999999999999998875

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.00043  Score=49.65  Aligned_cols=28  Identities=18%  Similarity=0.455  Sum_probs=24.1

Q ss_pred             CCCceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          3 NKNFLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         3 ~~~~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      +.+.++|.++|. +|+||||++..|+..|
T Consensus         3 ~~~~~iivl~G~-~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           3 NHDHHIYVLMGV-SGSGKSAVASEVAHQL   30 (171)
T ss_dssp             CTTSEEEEEECS-TTSCHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECC-CCCCHHHHHHHHHHHh
Confidence            445678888888 9999999999999887

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.88  E-value=0.00026  Score=56.03  Aligned_cols=37  Identities=14%  Similarity=0.392  Sum_probs=30.8

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.++|+|+|. +|+||||++..|...|.+.|.++.++.
T Consensus         3 k~pIIgIaG~-SGSGKTTva~~l~~i~~~~~v~~~iI~   39 (288)
T d1a7ja_           3 KHPIISVTGS-SGAGTSTVKHTFDQIFRREGVKAVSIE   39 (288)
T ss_dssp             TSCEEEEESC-C---CCTHHHHHHHHHHHHTCCEEEEE
T ss_pred             CCCEEEEECC-CCCcHHHHHHHHHHHHhhcCCCeEEEe
Confidence            4569999999 999999999999999999999988875

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.87  E-value=0.00038  Score=49.04  Aligned_cols=23  Identities=13%  Similarity=0.114  Sum_probs=17.8

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHH
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La   28 (233)
                      |-++|.|+|. +|+||||++..|+
T Consensus         1 MkklIii~G~-pGsGKTTla~~L~   23 (152)
T d1ly1a_           1 MKKIILTIGC-PGSGKSTWAREFI   23 (152)
T ss_dssp             CCEEEEEECC-TTSSHHHHHHHHH
T ss_pred             CCEEEEEECC-CCCCHHHHHHHHH
Confidence            3457777777 9999999987654

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.71  E-value=0.0011  Score=50.47  Aligned_cols=35  Identities=20%  Similarity=0.208  Sum_probs=31.5

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .++.|+|. +|+|||+++.++|..+.++|.+|+++.
T Consensus        27 sl~li~G~-pGsGKT~l~~qia~~~~~~~~~~~~is   61 (242)
T d1tf7a2          27 SIILATGA-TGTGKTLLVSRFVENACANKERAILFA   61 (242)
T ss_dssp             CEEEEEEC-TTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             eEEEEEeC-CCCCHHHHHHHHHHHHHHhccccceee
Confidence            45667777 999999999999999999999999987

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.66  E-value=0.00063  Score=50.28  Aligned_cols=29  Identities=17%  Similarity=0.282  Sum_probs=25.0

Q ss_pred             CCCCceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          2 INKNFLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         2 ~~~~~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      ...+.++|+|.|+ +|+||||+|..|+..|
T Consensus         4 ~~~~~~iI~i~Gp-pGSGKsT~a~~La~~~   32 (196)
T d1ukza_           4 SPDQVSVIFVLGG-PGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             CTTTCEEEEEECS-TTSSHHHHHHHHHHHS
T ss_pred             CCCCCcEEEEECC-CCCCHHHHHHHHHHHh
Confidence            3456789999988 9999999999998876

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.66  E-value=0.0006  Score=48.98  Aligned_cols=33  Identities=21%  Similarity=0.248  Sum_probs=25.2

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .++|+++|. +|+||||++..|+..+   |.+...++
T Consensus         4 g~iI~l~G~-~GsGKSTia~~La~~l---g~~~~~~~   36 (176)
T d1zp6a1           4 GNILLLSGH-PGSGKSTIAEALANLP---GVPKVHFH   36 (176)
T ss_dssp             TEEEEEEEC-TTSCHHHHHHHHHTCS---SSCEEEEC
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHHHh---CCCEEEec
Confidence            468899999 9999999987776533   66766654

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.61  E-value=0.0012  Score=51.35  Aligned_cols=35  Identities=11%  Similarity=0.045  Sum_probs=29.1

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHH-HcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFK-KRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~-~~G~~Vl~~d   42 (233)
                      ..+.|++. +|+|||+++.++|..++ +.|.+|+++.
T Consensus        36 ~l~vi~G~-~G~GKT~~~~~la~~~a~~~g~~v~~~s   71 (277)
T d1cr2a_          36 EVIMVTSG-SGMGKSTFVRQQALQWGTAMGKKVGLAM   71 (277)
T ss_dssp             CEEEEECS-TTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred             eEEEEEeC-CCCCHHHHHHHHHHhhhhhcccceeEee
Confidence            34556665 99999999999999876 5799999986

>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramyl tripeptide synthetase MurE
species: Escherichia coli [TaxId: 562]

Probab=96.58  E-value=0.0013  Score=49.55  Aligned_cols=35  Identities=29%  Similarity=0.119  Sum_probs=31.7

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGM   41 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~   41 (233)
                      +++++|+|||+   .||||++.-|++.|...|+++.++
T Consensus         3 ~~~~vI~ITGT---~GKTTt~~~l~~iL~~~g~~~~~~   37 (234)
T d1e8ca3           3 DNLRLVGVTGT---NGKTTTTQLLAQWSQLLGEISAVM   37 (234)
T ss_dssp             GSSEEEEEESS---SCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCCeEEEEECC---CcHHHHHHHHHHHHHHCCCCeEEE
Confidence            46799999988   599999999999999999999875

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.57  E-value=0.00074  Score=48.44  Aligned_cols=23  Identities=35%  Similarity=0.533  Sum_probs=20.3

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      .|+|+|. +|+||||++..|+..|
T Consensus         7 ~I~i~G~-~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           7 NILITGT-PGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             EEEEECS-TTSSHHHHHHHHHHHS
T ss_pred             EEEEEeC-CCCCHHHHHHHHHHHh
Confidence            5889988 9999999998888765

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.53  E-value=0.00082  Score=48.20  Aligned_cols=24  Identities=21%  Similarity=0.331  Sum_probs=21.8

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      |.|+++|. +|+||||++..||..|
T Consensus         1 k~I~liG~-~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           1 KNIVFIGF-MGSGKSTLARALAKDL   24 (161)
T ss_dssp             CCEEEECC-TTSCHHHHHHHHHHHH
T ss_pred             CcEEEECC-CCCCHHHHHHHHHHHh
Confidence            45888898 9999999999999998

>d1s1ma2 c.37.1.10 (A:1-266) CTP synthase PyrG, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: CTP synthase PyrG, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.014  Score=44.65  Aligned_cols=193  Identities=13%  Similarity=0.146  Sum_probs=101.9

Q ss_pred             CceeEEEEe-CCCCCcHHHHHHHHHHHHHHcCCeeeEEe--eeec-Ccc-----c------CCCCCCccchHHHHHHHHh
Q psy14904          5 NFLHYFITG-TNTNIGKTIISCALLSEFKKRGISCIGMK--PIAS-GAY-----L------NNKNKIWFNEDVNLLNKYS   69 (233)
Q Consensus         5 ~~~~i~i~~-~kggvGKTt~a~~La~~l~~~G~~Vl~~d--p~~~-~~~-----~------~~~~~~l~~~d~~~~~~~~   69 (233)
                      ++|-|+||| -=+|.||=.+|+.|+..|+.+|++|..+|  |-.. ++.     .      .+ ..+-.+-|...+.++.
T Consensus         2 ~tkyifvtGGV~S~lGKGi~~aSig~llk~~g~~V~~~K~DPYlNvD~GtmsP~eHGEvfVt~-DG~EtDlDlG~YERFl   80 (266)
T d1s1ma2           2 TTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTE-DGAETDLDLGHYERFI   80 (266)
T ss_dssp             CCEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECCSCSCGGGSCTTTSCCCEECT-TSCEECTHHHHHHHHC
T ss_pred             CceEEEEeCCcccccchHHHHHHHHHHHHhCCceeEEEecccceecCCCCCCchhhceeEEec-cccccccCccceeccC
Confidence            357888887 45899999999999999999999999976  4211 110     0      01 0112233555566666


Q ss_pred             CCCcccccceeee-eecCCCChhhhhhhcCCCC----C-----HHHHHHHHHHhhcCCCeEEEeccCcccCccCCCCchH
Q psy14904         70 NSLYEFTKLINPY-LFKYPISPYTSSNLENRII----N-----TSHIINCYNYLSNLTDVIILEGIGGFSVPFHDNENSA  139 (233)
Q Consensus        70 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~-----~~~l~~~~~~l~~~~D~vlID~~~g~~~p~~~~~~~~  139 (233)
                      +.......++... .+.    .-+..++.|..+    .     -+.+++.+.+..+++|++|+|-.|-..+ + +.+...
T Consensus        81 ~~~l~~~~niTtGkiy~----~Vi~kER~G~yLG~TVQvIPHiTdeIk~~I~~~~~~~Di~ivEiGGTVGD-I-Es~pFl  154 (266)
T d1s1ma2          81 RTKMSRRNNFTTGRIYS----DVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGD-I-ESLPFL  154 (266)
T ss_dssp             SSCCCGGGEEEHHHHHH----HHHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHTTCSEEEEEECSCTTS-S-TTHHHH
T ss_pred             CCCCcCccccchhHHHH----HHHHHhhccccccCcccccCchHHHHHHHHHhcCCCCCEEEEeccceech-h-hcchHH
Confidence            6443221222110 010    001123334321    1     2556777777788999999998765542 1 111112


Q ss_pred             ----HHHHHhC-CCEEEEEc---CCCC-----cHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhcCC
Q psy14904        140 ----DLAEKLG-LPIILVID---LKIG-----CINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYLNV  206 (233)
Q Consensus       140 ----~l~~~~~-~~vllV~~---~~~~-----~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~~~  206 (233)
                          ++....+ ..++++.-   +...     -.+-+..+++.|+..|+. .=+++=|..   ....++..+++.-..++
T Consensus       155 EAiRQl~~e~g~~n~~~iHvtlvP~l~~~gE~KTKPTQhSVkeLrs~GIq-PDilvcRse---~~l~~~~k~KIslFcnV  230 (266)
T d1s1ma2         155 EAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQ-PDILICRSD---RAVPANERAKIALFCNV  230 (266)
T ss_dssp             HHHHHHHHHHCTTSEEEEEEEECCEETTTTEECCHHHHHHHHHHHTTTCC-CSEEEEEES---SCCCHHHHHHHHHTTCC
T ss_pred             HHHHHHHHhcCCCCEEEEeeccceeeccccccccchHHHHHHHHHhcCCC-CCeEeeccc---cCCCHHHHHHHHhhcCC
Confidence                2222232 23333321   1111     112245577788877776 334555554   22345667777765555


Q ss_pred             Cc
Q psy14904        207 TP  208 (233)
Q Consensus       207 pv  208 (233)
                      +.
T Consensus       231 ~~  232 (266)
T d1s1ma2         231 PE  232 (266)
T ss_dssp             CS
T ss_pred             Ch
Confidence            43

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.49  E-value=0.0012  Score=49.39  Aligned_cols=32  Identities=25%  Similarity=0.380  Sum_probs=25.6

Q ss_pred             ce-eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FL-HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~-~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      || +|.|||. .|+||||+|-    .|.+.|+.|.=.|
T Consensus         2 mk~iIgitG~-igSGKStv~~----~l~~~G~~vidaD   34 (208)
T d1vhta_           2 LRYIVALTGG-IGSGKSTVAN----AFADLGINVIDAD   34 (208)
T ss_dssp             CCEEEEEECC-TTSCHHHHHH----HHHHTTCEEEEHH
T ss_pred             CCEEEEEECC-CcCCHHHHHH----HHHHCCCcEEEch
Confidence            66 8999999 9999999884    5678898875433

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.45  E-value=0.0031  Score=50.90  Aligned_cols=65  Identities=14%  Similarity=0.100  Sum_probs=45.5

Q ss_pred             CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904        116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ  186 (233)
Q Consensus       116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~  186 (233)
                      .|-+=||||||...     ......-+....+.+++|+++..|-..++...++.+.+.+++++ +++||++
T Consensus        95 ~~~inliDtPGh~d-----F~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~~~p~i-~viNKiD  159 (341)
T d1n0ua2          95 SFLINLIDSPGHVD-----FSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPV-VVINKVD  159 (341)
T ss_dssp             EEEEEEECCCCCCS-----SCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEE-EEEECHH
T ss_pred             ceEEEEEcCCCcHH-----HHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHcCCCeE-EEEECcc
Confidence            34467899998752     11223333344457899999888766677778888888899855 7799998

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.42  E-value=0.0012  Score=49.34  Aligned_cols=26  Identities=19%  Similarity=0.180  Sum_probs=23.8

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      +.++|+|.|+ +|+||||+|..||..|
T Consensus         2 ~~piI~I~Gp-pGSGKgT~ak~La~~~   27 (225)
T d1ckea_           2 IAPVITIDGP-SGAGKGTLCKAMAEAL   27 (225)
T ss_dssp             CSCEEEEECC-TTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECC-CCCCHHHHHHHHHHHh
Confidence            4569999999 9999999999999988

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.39  E-value=0.0019  Score=51.41  Aligned_cols=36  Identities=14%  Similarity=0.099  Sum_probs=30.9

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHc--CCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKR--GISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~--G~~Vl~~d   42 (233)
                      .-+|+|+|. .|+||||+|..|...|++.  |.+|.++-
T Consensus        80 P~iIGIaG~-sgSGKSTla~~L~~lL~~~~~~~~v~~Is  117 (308)
T d1sq5a_          80 PYIISIAGS-VAVGKSTTARVLQALLSRWPEHRRVELIT  117 (308)
T ss_dssp             CEEEEEEEC-TTSSHHHHHHHHHHHHTTSTTCCCEEEEE
T ss_pred             CEEEEEeCC-CCCCCcHHHHHHHHHHhhhcCCCceEEEe
Confidence            348999999 9999999999999999864  67888874

>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella thermoacetica [TaxId: 1525]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Formyltetrahydrofolate synthetase
species: Moorella thermoacetica [TaxId: 1525]

Probab=96.36  E-value=0.0013  Score=55.56  Aligned_cols=37  Identities=22%  Similarity=0.200  Sum_probs=31.0

Q ss_pred             CceeEEEEe---CCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904          5 NFLHYFITG---TNTNIGKTIISCALLSEFKKRGISCIGM   41 (233)
Q Consensus         5 ~~~~i~i~~---~kggvGKTt~a~~La~~l~~~G~~Vl~~   41 (233)
                      ..|.|.||+   +.-|.||||++.+|+.+|++.|+++.+.
T Consensus        50 ~gklilVTaitPTp~GEGKtTttiGL~~aL~~lgk~~~~~   89 (549)
T d1eg7a_          50 DGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVC   89 (549)
T ss_dssp             CCEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CceEEEEEeCCCCCCCCCcceeHHhHHHHHHHhCCceEEE
Confidence            345666654   7789999999999999999999998874

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.00086  Score=50.18  Aligned_cols=35  Identities=11%  Similarity=0.202  Sum_probs=28.0

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcC-----CeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRG-----ISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G-----~~Vl~~d   42 (233)
                      -+|+|+|. .|+||||+|..|+..|...+     .+|.++.
T Consensus         3 ~iIgI~G~-~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~   42 (213)
T d1uj2a_           3 FLIGVSGG-TASGKSSVCAKIVQLLGQNEVDYRQKQVVILS   42 (213)
T ss_dssp             EEEEEECS-TTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEE
T ss_pred             EEEEEECC-CCCCHHHHHHHHHHHhchhccccCCCceEEEe
Confidence            36889999 99999999999999997654     3455553

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.30  E-value=0.0013  Score=47.18  Aligned_cols=24  Identities=21%  Similarity=0.282  Sum_probs=20.7

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      +.|.++|. +||||||++..||..|
T Consensus         2 p~IvliG~-~G~GKSTig~~La~~l   25 (165)
T d2iyva1           2 PKAVLVGL-PGSGKSTIGRRLAKAL   25 (165)
T ss_dssp             CSEEEECS-TTSSHHHHHHHHHHHH
T ss_pred             CcEEEECC-CCCCHHHHHHHHHHHh
Confidence            34667788 9999999999999888

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.28  E-value=0.0028  Score=47.21  Aligned_cols=35  Identities=20%  Similarity=0.232  Sum_probs=30.3

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGM   41 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~   41 (233)
                      .|-|+|-|. -|+||||.+-.|+..|..+|+++.++
T Consensus         2 gkfIviEG~-dGsGKsT~~~~L~~~L~~~g~~~~~~   36 (210)
T d4tmka_           2 SKYIVIEGL-EGAGKTTARNVVVETLEQLGIRDMVF   36 (210)
T ss_dssp             CCEEEEEEC-TTSCHHHHHHHHHHHHHHTTCCCEEE
T ss_pred             CCEEEEECC-CCCCHHHHHHHHHHHHHhCCCCeEEE
Confidence            467888888 89999999999999999999876554

>d1vcoa2 c.37.1.10 (A:11-282) CTP synthase PyrG, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: CTP synthase PyrG, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.28  E-value=0.048  Score=41.72  Aligned_cols=193  Identities=13%  Similarity=0.152  Sum_probs=101.5

Q ss_pred             CceeEEEEe-CCCCCcHHHHHHHHHHHHHHcCCeeeEEe--eeec-Ccc-----c------CCCCCCccchHHHHHHHHh
Q psy14904          5 NFLHYFITG-TNTNIGKTIISCALLSEFKKRGISCIGMK--PIAS-GAY-----L------NNKNKIWFNEDVNLLNKYS   69 (233)
Q Consensus         5 ~~~~i~i~~-~kggvGKTt~a~~La~~l~~~G~~Vl~~d--p~~~-~~~-----~------~~~~~~l~~~d~~~~~~~~   69 (233)
                      ++|-|+||| -=+|.||=.+|+.|+..|..+|++|..+|  |-.. ++.     .      .+ ..+-.+-|...+.+..
T Consensus         1 ~~kyifvtGGV~S~lGKGi~~asig~ll~~~g~~v~~~K~DpYlNvD~Gtm~P~eHGEVfVt~-DG~EtDlDlG~YERfl   79 (272)
T d1vcoa2           1 PRKYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKIDPYVNVDAGTMRPYEHGEVFVTA-DGAETDLDIGHYERFL   79 (272)
T ss_dssp             CCEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECSSCSSGGGSCSSTTSCCEECT-TCCEECTHHHHHHHHH
T ss_pred             CceEEEEeCCcccccccHHHHHHHHHHHHhCCCceeEEeeccceecCCCCCCchhhceEEEec-ccccccccccceeecc
Confidence            468889988 45789999999999999999999999976  3211 111     0      01 0122234565566666


Q ss_pred             CCCcccccceeee-eecCCCChhhhhhhcCCCC----C-----HHHHHHHHHHhh--cCCCeEEEeccCcccCccCCCCc
Q psy14904         70 NSLYEFTKLINPY-LFKYPISPYTSSNLENRII----N-----TSHIINCYNYLS--NLTDVIILEGIGGFSVPFHDNEN  137 (233)
Q Consensus        70 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~-----~~~l~~~~~~l~--~~~D~vlID~~~g~~~p~~~~~~  137 (233)
                      +...+...++... .|.    .-...++.|..+    .     .+.+++.+.+++  .++|++|+|-.|...+ + +.+.
T Consensus        80 ~~~l~~~~n~TtG~iy~----~vi~kER~G~yLG~TVQvIPHvTdeIk~~I~~~a~~~~~Di~ivEiGGTVGD-i-Es~p  153 (272)
T d1vcoa2          80 DMDLSRGNNLTTGQVYL----SVIQKERRGEYLSQTVQVIPHITDEIKERIRKVAEEQKAEIVVVEVGGTVGD-I-ESLP  153 (272)
T ss_dssp             TSCCCGGGEEEHHHHHH----HHHHHHHTTTTTTCCCCTTTHHHHHHHHHHHHHHHHTTCSEEEEEECSCTTS-S-TTHH
T ss_pred             CCCCcCccchhHHHHHH----HHHHHHhhCCccccccccCCcchHHHHHHHHhcccCCCCCEEEEeccceecc-c-chhh
Confidence            6443321222110 010    001123333321    1     245566665444  5789999998766543 1 1111


Q ss_pred             h----HHHHHHhC-CCEEEEEcCC---CC-----cHHHHHHHHHHHHhCCCcEEEEEEcccCCCchhhhhhhHHHHHhhc
Q psy14904        138 S----ADLAEKLG-LPIILVIDLK---IG-----CINNALLSLEAINSRGLKLIGWVANHTQIVDTLFANENYIELTKYL  204 (233)
Q Consensus       138 ~----~~l~~~~~-~~vllV~~~~---~~-----~~~~~~~~~~~l~~~~~~i~GiVlN~~~~~~~~~~~~~~~~l~~~~  204 (233)
                      .    -++....+ ..+++|.-.-   ..     -.+=+..+++.|+..|+. .-+++=|.+   ....++..+++.-..
T Consensus       154 FlEAiRQl~~e~g~~n~~~iHvtlvP~~~~~gE~KTKPTQhSVk~Lr~~GIq-PDilvcRse---~~l~~~~k~KIslFc  229 (272)
T d1vcoa2         154 FLEAIRQFRFDEGEGNTLYLHLTLVPYLETSEEFKTKPTQHSVATLRGVGIQ-PDILVLRSA---RPVPEEVRRKVALFT  229 (272)
T ss_dssp             HHHHHHTHHHHHCTTSEEEEEEEECCEETTTTEECCHHHHHHHHHHHHTTCC-CSEEEEEES---SCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCCcEEEEeeeeeeecccccccccCchhHHHHHHHhcCCC-CceeeeccC---CcCCHHHHHHHHHhc
Confidence            1    22222232 1233333111   11     112255577888888876 334454554   224456777777666


Q ss_pred             CCCc
Q psy14904        205 NVTP  208 (233)
Q Consensus       205 ~~pv  208 (233)
                      +++.
T Consensus       230 nV~~  233 (272)
T d1vcoa2         230 NVRP  233 (272)
T ss_dssp             TCCG
T ss_pred             CCCH
Confidence            6654

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.25  E-value=0.0016  Score=47.13  Aligned_cols=22  Identities=14%  Similarity=0.335  Sum_probs=20.1

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          9 YFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      |+|.|. +|+||||+|..||..+
T Consensus         3 I~i~G~-pGSGKsT~a~~La~~~   24 (182)
T d1zina1           3 LVLMGL-PGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEECS-TTSSHHHHHHHHHHHH
T ss_pred             EEEECC-CCCCHHHHHHHHHHHH
Confidence            778888 9999999999999887

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.19  E-value=0.065  Score=40.57  Aligned_cols=65  Identities=14%  Similarity=0.113  Sum_probs=41.3

Q ss_pred             cCCCeEEEeccCcccCccCCCCchHHHHH--HhCCCEEEEEcCCCCcH-------HHHHHHHHHHHhCCCcEEEEEEccc
Q psy14904        115 NLTDVIILEGIGGFSVPFHDNENSADLAE--KLGLPIILVIDLKIGCI-------NNALLSLEAINSRGLKLIGWVANHT  185 (233)
Q Consensus       115 ~~~D~vlID~~~g~~~p~~~~~~~~~l~~--~~~~~vllV~~~~~~~~-------~~~~~~~~~l~~~~~~i~GiVlN~~  185 (233)
                      +++.+.||||||...  +     ...+..  ....-+++|+++..+.+       .++...+..++..+++-+=+++||+
T Consensus        82 ~~~~i~iiDtPGH~d--f-----~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~gv~~iiv~iNKm  154 (239)
T d1f60a3          82 PKYQVTVIDAPGHRD--F-----IKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKM  154 (239)
T ss_dssp             SSEEEEEEECCCCTT--H-----HHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECG
T ss_pred             CCEEEEEEECCCcHH--H-----HHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHcCCCeEEEEEECC
Confidence            357899999997642  1     111111  11234777887765432       2466667777788888666789999


Q ss_pred             C
Q psy14904        186 Q  186 (233)
Q Consensus       186 ~  186 (233)
                      +
T Consensus       155 D  155 (239)
T d1f60a3         155 D  155 (239)
T ss_dssp             G
T ss_pred             C
Confidence            8

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.14  E-value=0.002  Score=46.32  Aligned_cols=25  Identities=32%  Similarity=0.550  Sum_probs=22.9

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHc
Q psy14904          9 YFITGTNTNIGKTIISCALLSEFKKR   34 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l~~~   34 (233)
                      |+|+|. +|+||||+...++..+...
T Consensus         3 i~I~G~-~G~GKSTLl~~i~~~l~~~   27 (178)
T d1ye8a1           3 IIITGE-PGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             EEEECC-TTSSHHHHHHHHHHHHGGG
T ss_pred             EEEECC-CCcHHHHHHHHHHhcCCCC
Confidence            899999 9999999999999999765

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.11  E-value=0.0016  Score=47.87  Aligned_cols=26  Identities=15%  Similarity=0.275  Sum_probs=22.6

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      +.++|+|.|+ +|+||||+|..||..+
T Consensus         7 ~~~iI~l~G~-pGSGKsT~a~~La~~~   32 (194)
T d3adka_           7 KSKIIFVVGG-PGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             TSCEEEEEEC-TTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECC-CCCCHHHHHHHHHHHh
Confidence            4578999999 9999999999998854

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.09  E-value=0.002  Score=48.17  Aligned_cols=23  Identities=22%  Similarity=0.455  Sum_probs=21.2

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      +|+|.|+ +|+||||+|..||..|
T Consensus         5 ~IaIdGp-~GsGKgT~ak~La~~l   27 (223)
T d1q3ta_           5 QIAIDGP-ASSGKSTVAKIIAKDF   27 (223)
T ss_dssp             EEEEECS-SCSSHHHHHHHHHHHH
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHh
Confidence            4788899 9999999999999998

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.05  E-value=0.0019  Score=48.11  Aligned_cols=33  Identities=24%  Similarity=0.282  Sum_probs=26.0

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      |+-+|.|||. .|+||||+|    ..|.+.|..|.-.|
T Consensus         1 M~~iIgITG~-igSGKStv~----~~l~~~G~~vidaD   33 (205)
T d1jjva_           1 MTYIVGLTGG-IGSGKTTIA----NLFTDLGVPLVDAD   33 (205)
T ss_dssp             CCEEEEEECS-TTSCHHHHH----HHHHTTTCCEEEHH
T ss_pred             CcEEEEEECC-CCCCHHHHH----HHHHHCCCeEEEch
Confidence            4568999999 999999986    46677898886444

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.0026  Score=46.62  Aligned_cols=28  Identities=21%  Similarity=0.457  Sum_probs=23.7

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISC   38 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~V   38 (233)
                      .+|+|.|+ +|+||||.|..||..|   |...
T Consensus         2 ~iI~i~Gp-pGSGKsT~a~~La~~~---g~~~   29 (194)
T d1teva_           2 LVVFVLGG-PGAGKGTQCARIVEKY---GYTH   29 (194)
T ss_dssp             EEEEEECC-TTSSHHHHHHHHHHHH---CCEE
T ss_pred             cEEEEECC-CCCCHHHHHHHHHHHh---CCce
Confidence            47899999 9999999999999877   6544

>d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: Folylpolyglutamate synthetase
domain: Folylpolyglutamate synthetase
species: Lactobacillus casei [TaxId: 1582]

Probab=95.99  E-value=0.004  Score=49.09  Aligned_cols=36  Identities=19%  Similarity=0.145  Sum_probs=32.6

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +++|+|.|||+   -|||||+.-|...|...|++|+++-
T Consensus        37 ~~lkvI~VTGT---NGKtST~~~i~~IL~~~G~kvG~~t   72 (296)
T d2gc6a2          37 QQGRYIHVTGT---NGKGSAANAIAHVLEASGLTVGLYT   72 (296)
T ss_dssp             GSSCEEEEECS---SSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             hhCCEEEEecc---CcHHHHHHHHHHHHHhcCCceeeee
Confidence            46889999988   5899999999999999999999974

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.99  E-value=0.0048  Score=46.26  Aligned_cols=35  Identities=37%  Similarity=0.336  Sum_probs=32.2

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.++|.|. +|+|||.++..++..+.++|+++.++.
T Consensus        37 n~l~l~G~-~G~GKTHLl~A~~~~~~~~~~~~~~~~   71 (213)
T d1l8qa2          37 NPIFIYGS-VGTGKTHLLQAAGNEAKKRGYRVIYSS   71 (213)
T ss_dssp             SSEEEECS-SSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CcEEEECC-CCCcHHHHHHHHHHHhccCccceEEec
Confidence            45888888 999999999999999999999999986

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=95.97  E-value=0.014  Score=43.10  Aligned_cols=65  Identities=12%  Similarity=0.019  Sum_probs=43.3

Q ss_pred             cCCCeEEEeccCcccC-c-cCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904        115 NLTDVIILEGIGGFSV-P-FHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ  186 (233)
Q Consensus       115 ~~~D~vlID~~~g~~~-p-~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~  186 (233)
                      .++.+.+|||||...- . ...++..+       .-+++|+++..+-..++...+..+...+.+-+=+++||++
T Consensus        64 ~~~~~~~iDtPGh~~f~~~~~~~~~~a-------D~allVVda~~G~~~QT~~~~~~a~~~~~~~iIv~iNK~D  130 (196)
T d1d2ea3          64 AARHYAHTDCPGHADYVKNMITGTAPL-------DGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKAD  130 (196)
T ss_dssp             SSCEEEEEECSSHHHHHHHHHHTSSCC-------SEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGG
T ss_pred             ceeeEEeecCcchHHHHHHHHHHHhhc-------CeEEEEEEcCCCCchhHHHHHHHHHHhcCCcEEEEEeccc
Confidence            3577999999976420 0 00111122       3578888888776667777777777778765657799998

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=95.97  E-value=0.0024  Score=46.95  Aligned_cols=25  Identities=24%  Similarity=0.315  Sum_probs=20.2

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      +|+ |+|.|. +|+||||+|..||..+
T Consensus         6 ~mr-IiliG~-PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           6 LLR-AAIMGA-PGSGKGTVSSRITKHF   30 (189)
T ss_dssp             CCE-EEEECC-TTSSHHHHHHHHHHHB
T ss_pred             cee-EEEECC-CCCCHHHHHHHHHHHH
Confidence            344 667788 9999999999999865

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=95.89  E-value=0.0049  Score=47.52  Aligned_cols=35  Identities=11%  Similarity=0.091  Sum_probs=26.8

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHc----------CCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKR----------GISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~----------G~~Vl~~d   42 (233)
                      .+..|++. +|+||||++++||.+++..          +.+|++++
T Consensus        30 ~~~~i~G~-~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~   74 (274)
T d1nlfa_          30 TVGALVSP-GGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLP   74 (274)
T ss_dssp             SEEEEEES-TTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEE
T ss_pred             cEEEEEeC-CCCCHHHHHHHHHHHHHcCCCcccccccCCCceEEEe
Confidence            35556666 9999999999999998853          23677765

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=95.88  E-value=0.0043  Score=46.74  Aligned_cols=33  Identities=15%  Similarity=0.155  Sum_probs=28.6

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +|.|+|. .|+||||+.-+|.+.+. .++++.++.
T Consensus         2 vi~v~G~-~GsGKTTLl~~ll~~~~-~~~~~~ivn   34 (244)
T d1yrba1           2 IVVFVGT-AGSGKTTLTGEFGRYLE-DNYKVAYVN   34 (244)
T ss_dssp             EEEEECS-TTSSHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred             EEEEEcC-CCCcHHHHHHHHHHHHh-hCCeEEEEe
Confidence            6889999 99999999999998764 677888875

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=95.80  E-value=0.0039  Score=45.49  Aligned_cols=30  Identities=20%  Similarity=0.246  Sum_probs=22.8

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISC   38 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~V   38 (233)
                      +-+++| +.|. +|+||||+|..||..+   |...
T Consensus         2 ~~~rii-l~G~-pGSGKsT~a~~La~~~---g~~~   31 (190)
T d1ak2a1           2 KGVRAV-LLGP-PGAGKGTQAPKLAKNF---CVCH   31 (190)
T ss_dssp             CCCEEE-EECC-TTSSHHHHHHHHHHHH---TCEE
T ss_pred             CccEEE-EECC-CCCCHHHHHHHHHHHh---CCeE
Confidence            345655 5677 9999999999999876   5544

>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.79  E-value=0.004  Score=46.17  Aligned_cols=34  Identities=24%  Similarity=0.169  Sum_probs=30.0

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGM   41 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~   41 (233)
                      +.++|+|||+   .||||++.-|+..|.+.|+++..+
T Consensus        13 ~~~~iAITGT---nGKTTt~~~l~~iL~~~g~~~~~~   46 (207)
T d1j6ua3          13 KKEEFAVTGT---DGKTTTTAMVAHVLKHLRKSPTVF   46 (207)
T ss_dssp             CCCEEEEECS---SSHHHHHHHHHHHHHHTTCCCEEE
T ss_pred             CCCEEEEECC---CCHHHHHHHHHHHHHhCCCCCeEE
Confidence            4679999987   799999999999999999987664

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=95.79  E-value=0.0058  Score=50.41  Aligned_cols=38  Identities=24%  Similarity=0.314  Sum_probs=33.4

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeee
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIA   45 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~   45 (233)
                      +-++|.|+ +|+|||++...+...+.++|..++++||-+
T Consensus        51 ~H~~I~G~-tGsGKT~~l~~li~~~~~~g~~~iiiD~kg   88 (433)
T d1e9ra_          51 RHLLVNGA-TGTGKSVLLRELAYTGLLRGDRMVIVDPNG   88 (433)
T ss_dssp             GCEEEEEC-TTSSHHHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred             ceEEEEeC-CCCcHHHHHHHHHHHHHhCCCCEEEEeCCh
Confidence            45788888 899999999899999999999999999853

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.74  E-value=0.0064  Score=47.71  Aligned_cols=33  Identities=18%  Similarity=0.246  Sum_probs=26.9

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHc---CCeeeEE
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKR---GISCIGM   41 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~---G~~Vl~~   41 (233)
                      +|.|+|. .|+||||+|..|...|.++   ..+|.++
T Consensus        29 iIGi~G~-qGSGKSTl~~~l~~~L~~~~~~~~~v~~i   64 (286)
T d1odfa_          29 FIFFSGP-QGSGKSFTSIQIYNHLMEKYGGEKSIGYA   64 (286)
T ss_dssp             EEEEECC-TTSSHHHHHHHHHHHHHHHHGGGSCEEEE
T ss_pred             EEEeECC-CCCCHHHHHHHHHHHHHHHhCCCcceEee
Confidence            6788888 9999999999999998775   3456654

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.70  E-value=0.004  Score=45.04  Aligned_cols=22  Identities=18%  Similarity=0.333  Sum_probs=19.9

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          9 YFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      |+|.|. +|+||||+|..|+..+
T Consensus         3 I~i~G~-pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           3 VLLLGP-PGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEECC-TTSSHHHHHHHHHHHH
T ss_pred             EEEECC-CCCCHHHHHHHHHHHH
Confidence            677787 9999999999999888

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.67  E-value=0.0043  Score=45.23  Aligned_cols=25  Identities=16%  Similarity=0.279  Sum_probs=21.2

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      +|+ |+|.|. +|+||||+|.-|+..+
T Consensus         3 Pm~-I~i~Gp-pGsGKsT~a~~La~~~   27 (189)
T d1zaka1           3 PLK-VMISGA-PASGKGTQCELIKTKY   27 (189)
T ss_dssp             SCC-EEEEES-TTSSHHHHHHHHHHHH
T ss_pred             CeE-EEEECC-CCCCHHHHHHHHHHHH
Confidence            444 778888 8999999999998887

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.67  E-value=0.0077  Score=44.88  Aligned_cols=36  Identities=19%  Similarity=0.146  Sum_probs=28.1

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHH-HcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFK-KRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~-~~G~~Vl~~d   42 (233)
                      ..++.|+|. +|+|||++|.+++...+ +.+.+++++.
T Consensus        26 G~~~~I~G~-~G~GKT~la~~~~~~~~~~~~~~~~~~s   62 (242)
T d1tf7a1          26 GRSTLVSGT-SGTGKTLFSIQFLYNGIIEFDEPGVFVT   62 (242)
T ss_dssp             TSEEEEEES-TTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             CeEEEEEeC-CCCCHHHHHHHHHHHHHHhcCCCccccc
Confidence            346677776 99999999999887654 4567888876

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=95.64  E-value=0.0043  Score=44.99  Aligned_cols=22  Identities=14%  Similarity=0.323  Sum_probs=19.7

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          9 YFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      |+|.|. +|+||||+|..||..|
T Consensus         3 I~i~G~-pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           3 IVLMGL-PGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEECS-TTSSHHHHHHHHHHHH
T ss_pred             EEEECC-CCCCHHHHHHHHHHHH
Confidence            667788 9999999999999887

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.63  E-value=0.0037  Score=47.24  Aligned_cols=35  Identities=23%  Similarity=0.309  Sum_probs=28.9

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ++++..|||. -|+||||+-.+|...  ++|+|++++-
T Consensus         2 ~iPv~iitGF-LGaGKTTll~~lL~~--~~~~riaVI~   36 (222)
T d1nija1           2 PIAVTLLTGF-LGAGKTTLLRHILNE--QHGYKIAVIE   36 (222)
T ss_dssp             CEEEEEEEES-SSSSCHHHHHHHHHS--CCCCCEEEEC
T ss_pred             CCCEEEEeeC-CCCCHHHHHHHHHhc--CCCCcEEEEE
Confidence            4788999999 899999998777663  4689999874

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=95.59  E-value=0.0067  Score=44.18  Aligned_cols=29  Identities=21%  Similarity=0.361  Sum_probs=23.5

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIG   40 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~   40 (233)
                      -+|.|||. .|+||||+|-    .|.+.|+++.-
T Consensus         4 ~IIgitG~-~gSGKstva~----~l~~~g~~~~~   32 (191)
T d1uf9a_           4 IIIGITGN-IGSGKSTVAA----LLRSWGYPVLD   32 (191)
T ss_dssp             EEEEEEEC-TTSCHHHHHH----HHHHTTCCEEE
T ss_pred             EEEEEECC-CCCCHHHHHH----HHHHCCCeEEE
Confidence            37899999 9999999874    45678988754

>d2jfga3 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=95.59  E-value=0.0072  Score=44.47  Aligned_cols=34  Identities=21%  Similarity=0.107  Sum_probs=30.5

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGM   41 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~   41 (233)
                      +.++|+|||+   .||||++.-|++.|...|+++.+.
T Consensus        10 ~~~vI~VTGT---~GKTTt~~~l~~iL~~~g~~~~~~   43 (204)
T d2jfga3          10 QAPIVAITGS---NGKSTVTTLVGEMAKAAGVNVGVG   43 (204)
T ss_dssp             CSCEEEEECS---SSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEEECC---CCHHHHHHHHHHHHHhcCCCcccC
Confidence            4679999988   799999999999999999998774

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.50  E-value=0.0047  Score=44.65  Aligned_cols=23  Identities=22%  Similarity=0.105  Sum_probs=18.1

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHH
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La   28 (233)
                      +...|.++|. +|+||||++..|+
T Consensus        13 ~p~liil~G~-pGsGKST~a~~l~   35 (172)
T d1yj5a2          13 NPEVVVAVGF-PGAGKSTFIQEHL   35 (172)
T ss_dssp             SCCEEEEECC-TTSSHHHHHHHHT
T ss_pred             CCEEEEEECC-CCCCHHHHHHHHH
Confidence            4456777777 9999999988764

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.44  E-value=0.00093  Score=50.70  Aligned_cols=31  Identities=16%  Similarity=0.159  Sum_probs=26.8

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCC
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGI   36 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~   36 (233)
                      +||.|+|-|. -|+||||++..|+..|...|.
T Consensus         1 ~~k~I~ieG~-dGsGKST~~~~L~~~l~~~~~   31 (241)
T d1p5zb_           1 RIKKISIEGN-IAAGKSTFVNILKQLCEDWEV   31 (241)
T ss_dssp             CCEEEEEECS-TTSSHHHHHTTTGGGCTTEEE
T ss_pred             CCCEEEEECC-CCCCHHHHHHHHHHHHhcCCC
Confidence            4899999999 999999999999998865543

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.38  E-value=0.0047  Score=46.79  Aligned_cols=30  Identities=17%  Similarity=0.218  Sum_probs=23.7

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCI   39 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl   39 (233)
                      |++|.|||. .|+||||+|.-|+.   +.|+.+.
T Consensus         1 M~iIgiTG~-igSGKsTva~~l~e---~~g~~~i   30 (241)
T d1deka_           1 MKLIFLSGV-KRSGKDTTADFIMS---NYSAVKY   30 (241)
T ss_dssp             CEEEEEECC-TTSSHHHHHHHHHH---HSCEEEC
T ss_pred             CEEEEEECC-CCCCHHHHHHHHHH---hCCCeEE
Confidence            789999999 89999999876644   2476554

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

Probab=95.36  E-value=0.0064  Score=44.85  Aligned_cols=34  Identities=18%  Similarity=0.094  Sum_probs=29.6

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGM   41 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~   41 (233)
                      +.|+|+|||+   -||||++.-|+..|.+.|++|...
T Consensus         1 p~kvI~VTGT---nGKTTt~~mi~~iL~~~g~~~~~~   34 (214)
T d1gg4a4           1 PARVVALTGS---SGKTSVKEMTAAILSQCGNTLYTA   34 (214)
T ss_dssp             CCEEEEEECS---SCHHHHHHHHHHHHTTTSCEEECC
T ss_pred             CCCEEEEeCC---CcHHHHHHHHHHHHHhCCCCEEEe
Confidence            3579999988   589999999999999999988763

>d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=95.35  E-value=0.0088  Score=44.41  Aligned_cols=35  Identities=14%  Similarity=0.086  Sum_probs=30.4

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..++|+|||+   .||||++.-|++.|.+.|+++..+-
T Consensus        11 ~~~~I~ITGT---nGKTTt~~~l~~iL~~~~~~~~~~~   45 (215)
T d1p3da3          11 FRHGIAVAGT---HGKTTTTAMISMIYTQAKLDPTFVN   45 (215)
T ss_dssp             TSEEEEEESS---SCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CCCEEEEECC---CCHHHHHHHHHHHHHhCCCCceEee
Confidence            3478999987   7999999999999999999988753

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.33  E-value=0.0052  Score=47.07  Aligned_cols=33  Identities=21%  Similarity=0.297  Sum_probs=25.4

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.|.+.|+ +|+||||++..||..+   +.....++
T Consensus        32 P~~ilL~Gp-PGtGKT~la~~la~~~---~~~~~~i~   64 (273)
T d1gvnb_          32 PTAFLLGGQ-PGSGKTSLRSAIFEET---QGNVIVID   64 (273)
T ss_dssp             CEEEEEECC-TTSCTHHHHHHHHHHT---TTCCEEEC
T ss_pred             CEEEEEECC-CCCCHHHHHHHHHHHh---hcceEEEe
Confidence            456888888 9999999998888876   44555554

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.32  E-value=0.0029  Score=47.67  Aligned_cols=33  Identities=15%  Similarity=0.029  Sum_probs=27.7

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIG   40 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~   40 (233)
                      .++.|+|. +|+|||+++.++|..++..|+.+.+
T Consensus        35 ~l~~i~G~-~G~GKT~~~l~~a~~~~~~~~~~~~   67 (258)
T d2i1qa2          35 SVTEFAGV-FGSGKTQIMHQSCVNLQNPEFLFYD   67 (258)
T ss_dssp             EEEEEEES-TTSSHHHHHHHHHHHTTCGGGEECC
T ss_pred             eEEEEEeC-CCCCHHHHHHHHHHHHHhcCCCceE
Confidence            56778887 9999999999999999887765544

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.32  E-value=0.0066  Score=43.91  Aligned_cols=24  Identities=21%  Similarity=0.296  Sum_probs=20.0

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      |+ |.|.|. +|+||||+|..||..+
T Consensus         3 mr-Ivl~G~-pGSGKtT~a~~La~~~   26 (180)
T d1akya1           3 IR-MVLIGP-PGAGKGTQAPNLQERF   26 (180)
T ss_dssp             CE-EEEECC-TTSSHHHHHHHHHHHH
T ss_pred             eE-EEEECC-CCCCHHHHHHHHHHHh
Confidence            55 456677 9999999999999876

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.19  E-value=0.0077  Score=43.36  Aligned_cols=22  Identities=14%  Similarity=0.317  Sum_probs=19.0

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          9 YFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      |+|.|. +|+||||+|..|+..+
T Consensus         3 I~i~G~-pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           3 IILLGA-PVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHH
T ss_pred             EEEECC-CCCCHHHHHHHHHHHh
Confidence            567788 8999999999998776

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.18  E-value=0.0045  Score=46.51  Aligned_cols=36  Identities=14%  Similarity=0.088  Sum_probs=28.7

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHH------HcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFK------KRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~------~~G~~Vl~~d   42 (233)
                      -+++.|+|. +|+||||++.+++...+      ..|.++++++
T Consensus        34 G~~~li~G~-pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~   75 (251)
T d1szpa2          34 GSITELFGE-FRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYID   75 (251)
T ss_dssp             SSEEEEEES-TTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEE
T ss_pred             CeEEEEEcC-CCCCHHHHHHHHHHHhhhhhhhccCCceEEEEe
Confidence            357778888 99999999999987653      3467888887

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=95.17  E-value=0.0075  Score=45.48  Aligned_cols=33  Identities=21%  Similarity=0.339  Sum_probs=25.4

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.+.++|+ +|+||||+|..||..+   +.....+.
T Consensus        35 ~~~~L~~GP-pGtGKT~lA~~la~~~---~~~~~~~~   67 (238)
T d1in4a2          35 LDHVLLAGP-PGLGKTTLAHIIASEL---QTNIHVTS   67 (238)
T ss_dssp             CCCEEEESS-TTSSHHHHHHHHHHHH---TCCEEEEE
T ss_pred             CCeEEEECC-CCCcHHHHHHHHHhcc---CCCccccc
Confidence            356888998 9999999998888766   55655554

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.17  E-value=0.0088  Score=45.18  Aligned_cols=36  Identities=19%  Similarity=0.050  Sum_probs=28.6

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHc------CCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKR------GISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~------G~~Vl~~d   42 (233)
                      -+++.|+|. +|+||||++.+++...+++      |-++.+++
T Consensus        36 G~~~li~G~-pGsGKT~~~lq~~~~~~~~~~~~~~~~~~~~~~   77 (254)
T d1pzna2          36 QAITEVFGE-FGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID   77 (254)
T ss_dssp             SEEEEEEES-TTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEE
T ss_pred             CEEEEEEcC-CCCCHHHHHHHHHHHhhchHHhcCCCceEEEEe
Confidence            356777787 9999999999999988754      45677765

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.13  E-value=0.011  Score=44.89  Aligned_cols=36  Identities=17%  Similarity=0.266  Sum_probs=28.3

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHc-CCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKR-GISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~-G~~Vl~~d   42 (233)
                      .+.+.|.|. +|+|||+++..|+..+... +.++..+.
T Consensus        43 ~~~lll~Gp-pGtGKT~l~~~l~~~l~~~~~~~~~~~~   79 (276)
T d1fnna2          43 YPRATLLGR-PGTGKTVTLRKLWELYKDKTTARFVYIN   79 (276)
T ss_dssp             CCEEEEECC-TTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred             CCceEEECC-CCCCHHHHHHHHHHHHhcccCCcEEEec
Confidence            457889998 9999999999999999754 44554443

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.04  E-value=0.004  Score=45.68  Aligned_cols=31  Identities=19%  Similarity=-0.031  Sum_probs=25.4

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCee
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISC   38 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~V   38 (233)
                      .++.|+|. +|+|||+++.++|...+..+...
T Consensus        24 ~v~~i~G~-~GsGKT~l~l~la~~~~~~~~~~   54 (242)
T d1n0wa_          24 SITEMFGE-FRTGKTQICHTLAVTCQLPIDRG   54 (242)
T ss_dssp             SEEEEECC-TTSSHHHHHHHHHHHTTSCGGGT
T ss_pred             EEEEEEeC-CCCCHHHHHHHHHHHHHHhhccc
Confidence            46777777 99999999999999888776543

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.99  E-value=0.0084  Score=46.71  Aligned_cols=26  Identities=27%  Similarity=0.503  Sum_probs=22.2

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      ...+|.|.|. ||+||||+|..+....
T Consensus        43 ~~~~v~I~Gm-gGiGKTtLA~~v~~~~   68 (277)
T d2a5yb3          43 DSFFLFLHGR-AGSGKSVIASQALSKS   68 (277)
T ss_dssp             SSEEEEEECS-TTSSHHHHHHHHHHHC
T ss_pred             CceEEEEECC-CCCCHHHHHHHHHHhh
Confidence            4578999998 9999999999987653

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=94.88  E-value=0.011  Score=44.62  Aligned_cols=32  Identities=22%  Similarity=0.438  Sum_probs=24.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEE
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGM   41 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~   41 (233)
                      .+.+.+.|+ +|+||||++..+|..+   ++.....
T Consensus        35 ~~~~Ll~GP-pG~GKTtla~~la~~~---~~~~~~~   66 (239)
T d1ixsb2          35 LEHLLLFGP-PGLGKTTLAHVIAHEL---GVNLRVT   66 (239)
T ss_dssp             CCCEEEECC-TTSCHHHHHHHHHHHH---TCCEEEE
T ss_pred             CCeEEEECC-CCCCHHHHHHHHHHHh---CCCeEec
Confidence            467888888 9999999999888765   5554443

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.84  E-value=0.012  Score=45.04  Aligned_cols=34  Identities=18%  Similarity=0.337  Sum_probs=26.9

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +++.|.+.|+ +|+|||+++..||..+   |..+.-++
T Consensus        39 p~~~vLL~Gp-pGtGKT~la~alA~~~---~~~~~~i~   72 (246)
T d1d2na_          39 PLVSVLLEGP-PHSGKTALAAKIAEES---NFPFIKIC   72 (246)
T ss_dssp             SEEEEEEECS-TTSSHHHHHHHHHHHH---TCSEEEEE
T ss_pred             CCeEEEEECc-CCCCHHHHHHHHhhcc---cccccccc
Confidence            4567899999 9999999999998765   56655544

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.78  E-value=0.022  Score=41.86  Aligned_cols=28  Identities=21%  Similarity=0.220  Sum_probs=23.8

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHc
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKR   34 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~   34 (233)
                      -..+.++|. +|||||++.-.||+.+...
T Consensus        43 k~n~lLvG~-pGVGKTalv~~LA~ri~~~   70 (195)
T d1jbka_          43 KNNPVLIGE-PGVGKTAIVEGLAQRIING   70 (195)
T ss_dssp             SCEEEEECC-TTSCHHHHHHHHHHHHHHT
T ss_pred             CCCeEEEec-CCcccHHHHHHHHHHHHhC
Confidence            346778888 9999999999999999863

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.76  E-value=0.013  Score=39.56  Aligned_cols=38  Identities=21%  Similarity=0.217  Sum_probs=32.4

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHHHc--CCeeeEEe
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFKKR--GISCIGMK   42 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~--G~~Vl~~d   42 (233)
                      ++-=+|+++|- .|+||+|+|..|...|.+.  |++|-++|
T Consensus         4 kqgf~i~~tg~-~~~gk~~ia~al~~~l~q~~G~R~vtll~   43 (122)
T d1g8fa3           4 KQGFSIVLGNS-LTVSREQLSIALLSTFLQFGGGRYYKIFE   43 (122)
T ss_dssp             GCCEEEEECTT-CCSCHHHHHHHHHHHHTTSCSCCCEEECC
T ss_pred             ccceEEEEeCC-CCCCHHHHHHHHHHHHHHhcCCcceEEec
Confidence            34557889998 9999999999999999884  68898887

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.70  E-value=0.011  Score=44.82  Aligned_cols=33  Identities=24%  Similarity=0.390  Sum_probs=26.3

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.+.+.|+ +|+||||++..||..+   |..+..+.
T Consensus        52 ~~~lll~GP-pG~GKTt~a~~la~~~---~~~~~~~~   84 (253)
T d1sxja2          52 FRAAMLYGP-PGIGKTTAAHLVAQEL---GYDILEQN   84 (253)
T ss_dssp             CSEEEEECS-TTSSHHHHHHHHHHHT---TCEEEEEC
T ss_pred             CceEEEECC-CCCCHHHHHHHHHHHH---Hhhhhccc
Confidence            457888888 9999999999988765   66666654

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=94.41  E-value=0.015  Score=46.06  Aligned_cols=34  Identities=24%  Similarity=0.259  Sum_probs=26.6

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.+.|.+.|+ +|||||.+|..||..+   +.....++
T Consensus        48 ~~~~iLl~GP-pG~GKT~lAkalA~~~---~~~~~~i~   81 (309)
T d1ofha_          48 TPKNILMIGP-TGVGKTEIARRLAKLA---NAPFIKVE   81 (309)
T ss_dssp             CCCCEEEECC-TTSSHHHHHHHHHHHH---TCCEEEEE
T ss_pred             CCceEEEECC-CCCCHHHHHHHHhhcc---ccchhccc
Confidence            3467888999 9999999999999886   34444455

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=94.39  E-value=0.014  Score=39.60  Aligned_cols=41  Identities=22%  Similarity=0.331  Sum_probs=27.9

Q ss_pred             CCCCCceeEEEEeCCCCCcHHHHHH-HHHHHHHHcCCeeeEEee
Q psy14904          1 MINKNFLHYFITGTNTNIGKTIISC-ALLSEFKKRGISCIGMKP   43 (233)
Q Consensus         1 ~~~~~~~~i~i~~~kggvGKTt~a~-~La~~l~~~G~~Vl~~dp   43 (233)
                      |+++. +...+... +|+|||.++. .+...+.+.+.+++++-|
T Consensus         3 ~l~~~-~~~il~~~-tGsGKT~~~~~~~~~~~~~~~~~vli~~p   44 (140)
T d1yksa1           3 MLKKG-MTTVLDFH-PGAGKTRRFLPQILAECARRRLRTLVLAP   44 (140)
T ss_dssp             TTSTT-CEEEECCC-TTSSTTTTHHHHHHHHHHHTTCCEEEEES
T ss_pred             HHHcC-CcEEEEcC-CCCChhHHHHHHHHHHhhhcCceeeeeec
Confidence            44443 44444445 8999998875 456677778888888753

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=94.25  E-value=0.021  Score=38.99  Aligned_cols=35  Identities=17%  Similarity=0.328  Sum_probs=25.2

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEee
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKP   43 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp   43 (233)
                      ..++..|... .|+|||+++.   .++.+.|++++++=|
T Consensus         7 ~~~~~ll~ap-TGsGKT~~~~---~~~~~~~~~vli~~P   41 (136)
T d1a1va1           7 SFQVAHLHAP-TGSGKSTKVP---AAYAAQGYKVLVLNP   41 (136)
T ss_dssp             SCEEEEEECC-TTSCTTTHHH---HHHHTTTCCEEEEES
T ss_pred             CCCEEEEEeC-CCCCHHHHHH---HHHHHcCCcEEEEcC
Confidence            3455555555 8999998764   445678999999753

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.24  E-value=0.0084  Score=48.04  Aligned_cols=37  Identities=24%  Similarity=0.411  Sum_probs=32.7

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe-ee
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK-PI   44 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d-p~   44 (233)
                      -.|+|-|. -|+||||++..|+..|..+|.+|.++. |+
T Consensus         6 lrI~IEG~-iGsGKSTl~~~L~~~l~~~g~~v~~~~EP~   43 (331)
T d1osna_           6 LRIYLDGA-YGIGKTTAAEEFLHHFAITPNRILLIGEPL   43 (331)
T ss_dssp             EEEEEEES-SSSCTTHHHHHHHHTTTTSGGGEEEECCCH
T ss_pred             eEEEEECC-CCCCHHHHHHHHHHHHhhcCCceEEEeCch
Confidence            36888888 899999999999999999999999886 53

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.22  E-value=0.019  Score=42.84  Aligned_cols=35  Identities=29%  Similarity=0.398  Sum_probs=26.7

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcC--CeeeEE
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRG--ISCIGM   41 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G--~~Vl~~   41 (233)
                      .+.+.++|+ +|+||||++..||..+....  +.+..+
T Consensus        36 ~~~~ll~Gp-~G~GKTt~a~~la~~l~~~~~~~~~~~~   72 (224)
T d1sxjb2          36 MPHMIISGM-PGIGKTTSVHCLAHELLGRSYADGVLEL   72 (224)
T ss_dssp             CCCEEEECS-TTSSHHHHHHHHHHHHHGGGHHHHEEEE
T ss_pred             CCeEEEECC-CCCCchhhHHHHHHHHhccccccccccc
Confidence            345778888 99999999999999987553  334444

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=94.17  E-value=0.032  Score=42.81  Aligned_cols=33  Identities=18%  Similarity=0.291  Sum_probs=27.9

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.+.+.|+ +|+|||+++..+|..+   |..+..++
T Consensus        45 ~~~iLL~Gp-pGtGKT~la~~iA~~~---~~~~~~i~   77 (256)
T d1lv7a_          45 PKGVLMVGP-PGTGKTLLAKAIAGEA---KVPFFTIS   77 (256)
T ss_dssp             CCEEEEECC-TTSCHHHHHHHHHHHH---TCCEEEEC
T ss_pred             CCeEEeeCC-CCCCccHHHHHHHHHc---CCCEEEEE
Confidence            456889999 9999999999999877   67777776

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=94.16  E-value=0.015  Score=47.86  Aligned_cols=35  Identities=23%  Similarity=0.242  Sum_probs=28.7

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      =.|.|+|+ .|+||||+...+...+.+.++++.-+-
T Consensus       159 GliLvtGp-TGSGKSTTl~~~l~~~~~~~~~i~tiE  193 (401)
T d1p9ra_         159 GIILVTGP-TGSGKSTTLYAGLQELNSSERNILTVE  193 (401)
T ss_dssp             EEEEEECS-TTSCHHHHHHHHHHHHCCTTSCEEEEE
T ss_pred             ceEEEEcC-CCCCccHHHHHHhhhhcCCCceEEEec
Confidence            35777777 999999999999999877777876663

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.16  E-value=0.02  Score=42.83  Aligned_cols=28  Identities=29%  Similarity=0.433  Sum_probs=23.7

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHc
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKR   34 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~   34 (233)
                      .+.+.++|+ +|+||||++..+|..+...
T Consensus        45 ~~~lll~Gp-~G~GKTtla~~iak~l~~~   72 (231)
T d1iqpa2          45 MPHLLFAGP-PGVGKTTAALALARELFGE   72 (231)
T ss_dssp             CCEEEEESC-TTSSHHHHHHHHHHHHHGG
T ss_pred             CCeEEEECC-CCCcHHHHHHHHHHHHHhc
Confidence            456888888 9999999999999988643

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.15  E-value=0.0076  Score=43.99  Aligned_cols=25  Identities=20%  Similarity=0.101  Sum_probs=20.1

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      ...|+|.|. -|+||||++-.|+..|
T Consensus         9 p~~I~ieG~-~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1           9 PFTVLIEGN-IGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             CEEEEEECS-TTSCHHHHHHTTGGGT
T ss_pred             ceEEEEECC-CCCCHHHHHHHHHHHh
Confidence            347889988 9999999888776554

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.14  E-value=0.029  Score=43.43  Aligned_cols=28  Identities=21%  Similarity=0.262  Sum_probs=24.3

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHc
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKR   34 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~   34 (233)
                      ...+.++|. +|||||++.-+||+.+.+.
T Consensus        39 k~n~lLVG~-~GvGKTalv~~la~ri~~~   66 (268)
T d1r6bx2          39 KNNPLLVGE-SGVGKTAIAEGLAWRIVQG   66 (268)
T ss_dssp             SCEEEEECC-TTSSHHHHHHHHHHHHHHT
T ss_pred             cCCcEEECC-CCCcHHHHHHHHHHHHHhC
Confidence            346778888 9999999999999999874

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.13  E-value=0.014  Score=43.97  Aligned_cols=35  Identities=26%  Similarity=0.374  Sum_probs=28.4

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEee
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKP   43 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp   43 (233)
                      .+.+..+ +|+|||+++...+..+..+|.+++++=|
T Consensus        60 ~~~i~ap-TGsGKT~~~~~~~~~~~~~~~rvliv~P   94 (237)
T d1gkub1          60 SFAATAP-TGVGKTSFGLAMSLFLALKGKRCYVIFP   94 (237)
T ss_dssp             CEECCCC-BTSCSHHHHHHHHHHHHTTSCCEEEEES
T ss_pred             CEEEEec-CCChHHHHHHHHHHHHHHhcCeEEEEec
Confidence            4455554 7999999988888888889999999865

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.10  E-value=0.016  Score=43.76  Aligned_cols=29  Identities=28%  Similarity=0.401  Sum_probs=23.7

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcC
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRG   35 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G   35 (233)
                      .+.+.++|+ +|+||||++..+|..+...+
T Consensus        33 ~~~lll~Gp-~G~GKTt~~~~la~~l~~~~   61 (252)
T d1sxje2          33 LPHLLLYGP-NGTGKKTRCMALLESIFGPG   61 (252)
T ss_dssp             CCCEEEECS-TTSSHHHHHHTHHHHHSCTT
T ss_pred             CCeEEEECC-CCCCHHHHHHHHHHhhcCcc
Confidence            456788888 99999999999999874443

>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: ATP:corrinoid adenosyltransferase CobA
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.10  E-value=0.047  Score=38.59  Aligned_cols=28  Identities=14%  Similarity=0.075  Sum_probs=25.9

Q ss_pred             CCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904         15 NTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus        15 kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..|-||||-|.++|..-+-+|+||+++.
T Consensus        10 G~GKGKTTAAlG~alRA~G~G~rV~ivQ   37 (157)
T d1g5ta_          10 GNGKGKTTAAFGTAARAVGHGKNVGVVQ   37 (157)
T ss_dssp             SSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCCcHHHHHHHHHHHhcCCCEEEEEE
Confidence            3599999999999999999999999986

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=94.08  E-value=0.032  Score=45.03  Aligned_cols=36  Identities=22%  Similarity=0.206  Sum_probs=26.6

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHH----cCCeeeEEee
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKK----RGISCIGMKP   43 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~----~G~~Vl~~dp   43 (233)
                      ++..|+|. +|+||||+...+...|.+    .|.+|++.=|
T Consensus       164 ~~~vI~G~-pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~Ap  203 (359)
T d1w36d1         164 RISVISGG-PGTGKTTTVAKLLAALIQMADGERCRIRLAAP  203 (359)
T ss_dssp             SEEEEECC-TTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBS
T ss_pred             CeEEEEcC-CCCCceehHHHHHHHHHHHHhccCCeEEEecC
Confidence            45556665 999999999887777754    4678888654

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=94.04  E-value=0.031  Score=42.68  Aligned_cols=33  Identities=21%  Similarity=0.276  Sum_probs=27.9

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.+.+.|+ +|+|||+++..||..+   |.++..++
T Consensus        42 ~~giLl~Gp-pGtGKT~la~aia~~~---~~~~~~i~   74 (247)
T d1ixza_          42 PKGVLLVGP-PGVGKTHLARAVAGEA---RVPFITAS   74 (247)
T ss_dssp             CSEEEEECC-TTSSHHHHHHHHHHHT---TCCEEEEE
T ss_pred             CceEEEecC-CCCChhHHHHHHHHHc---CCCEEEEE
Confidence            356888998 9999999999999765   78888877

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=94.01  E-value=0.031  Score=43.74  Aligned_cols=33  Identities=12%  Similarity=0.152  Sum_probs=24.3

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcC----CeeeEE
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRG----ISCIGM   41 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G----~~Vl~~   41 (233)
                      .+.|.|. +|+||||+.++-+..|...+    .+++++
T Consensus        26 ~~lV~g~-aGSGKTt~l~~ri~~ll~~~~~~p~~il~l   62 (318)
T d1pjra1          26 PLLIMAG-AGSGKTRVLTHRIAYLMAEKHVAPWNILAI   62 (318)
T ss_dssp             CEEEEEC-TTSCHHHHHHHHHHHHHHTTCCCGGGEEEE
T ss_pred             CEEEEec-CCccHHHHHHHHHHHHHHcCCCCHHHeEeE
Confidence            3566666 89999999998766665554    367775

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=93.98  E-value=0.014  Score=44.61  Aligned_cols=26  Identities=23%  Similarity=0.272  Sum_probs=21.6

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHc
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKR   34 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~   34 (233)
                      ++++.|+ +|+|||+++..++..|...
T Consensus        48 ~l~l~Gp-pGtGKT~l~~~l~~~l~~~   73 (287)
T d1w5sa2          48 IYGSIGR-VGIGKTTLAKFTVKRVSEA   73 (287)
T ss_dssp             EEECTTC-CSSSHHHHHHHHHHHHHHH
T ss_pred             EEEeECC-CCCCHHHHHHHHHHHHHhh
Confidence            3455677 9999999999999999764

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.97  E-value=0.015  Score=43.42  Aligned_cols=30  Identities=20%  Similarity=0.143  Sum_probs=25.8

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCC
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGI   36 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~   36 (233)
                      .+.|+|-|. -|+||||.+..|+..|..+|+
T Consensus         3 Gk~I~iEG~-DGsGKST~~~~L~~~L~~~~~   32 (214)
T d1tmka_           3 GKLILIEGL-DRTGKTTQCNILYKKLQPNCK   32 (214)
T ss_dssp             CCEEEEEES-TTSSHHHHHHHHHHHTTTSEE
T ss_pred             eEEEEEECC-CCCcHHHHHHHHHHHHHhCCE
Confidence            467899998 899999999999999976653

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=93.97  E-value=0.019  Score=44.52  Aligned_cols=34  Identities=12%  Similarity=0.191  Sum_probs=24.7

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHc-C---CeeeEEe
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKR-G---ISCIGMK   42 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~-G---~~Vl~~d   42 (233)
                      .+.|.|. +|+||||+.+..+..+.++ +   .+|+++-
T Consensus        16 ~~lI~g~-aGTGKTt~l~~rv~~ll~~~~~~~~~ILvlt   53 (306)
T d1uaaa1          16 PCLVLAG-AGSGKTRVITNKIAHLIRGCGYQARHIAAVT   53 (306)
T ss_dssp             EEEECCC-TTSCHHHHHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred             CEEEEee-CCccHHHHHHHHHHHHHHhcCCChhHEEEEe
Confidence            3566666 9999999988876666543 4   4788864

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=93.88  E-value=0.09  Score=39.25  Aligned_cols=66  Identities=15%  Similarity=0.081  Sum_probs=46.9

Q ss_pred             CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904        116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCINNALLSLEAINSRGLKLIGWVANHTQ  186 (233)
Q Consensus       116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~~~~~~~~~l~~~~~~i~GiVlN~~~  186 (233)
                      .+.+.+|||||...-     ..+..-.....+.+++|+++..+-..++...+..+...|++-+=+++|+++
T Consensus        88 ~~~~~iiD~PGH~df-----v~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~~gv~~iiv~vNK~D  153 (222)
T d1zunb3          88 KRKFIIADTPGHEQY-----TRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMD  153 (222)
T ss_dssp             SEEEEEEECCCSGGG-----HHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTT
T ss_pred             ceEEEEEeccchhhh-----hhhhccccccCceEEEEeccccCcccchHHHHHHHHHcCCCEEEEEEEccc
Confidence            567999999976421     111111223334688888888877777888888888899987778999998

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.83  E-value=0.024  Score=42.30  Aligned_cols=27  Identities=30%  Similarity=0.340  Sum_probs=22.9

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKK   33 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~   33 (233)
                      .+.+.++|+ +|+||||++..++..+..
T Consensus        33 ~~~lll~Gp-~G~GKTtl~~~i~~~l~~   59 (237)
T d1sxjd2          33 LPHMLFYGP-PGTGKTSTILALTKELYG   59 (237)
T ss_dssp             CCCEEEECS-TTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEECC-CCCChHHHHHHHHHHHcC
Confidence            345788888 999999999999998854

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.36  E-value=0.024  Score=40.77  Aligned_cols=25  Identities=16%  Similarity=0.321  Sum_probs=20.0

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFK   32 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~   32 (233)
                      +.|.|+|+ +|+||||++..|...+.
T Consensus         3 ~iivl~Gp-sG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           3 RVVVLSGP-SAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CEEEEECS-TTSSHHHHHHHHHHHST
T ss_pred             eEEEEECC-CCCCHHHHHHHHHhhCC
Confidence            57888888 99999999877765553

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.31  E-value=0.03  Score=40.74  Aligned_cols=24  Identities=21%  Similarity=0.390  Sum_probs=20.1

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFK   32 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~   32 (233)
                      .|+|+|+ +|+||||++-.|+..+.
T Consensus         2 pIvl~GP-sGsGK~tl~~~L~~~~~   25 (190)
T d1lvga_           2 PVVLSGP-SGAGKSTLLKKLFQEHS   25 (190)
T ss_dssp             CEEEECC-TTSSHHHHHHHHHHHHT
T ss_pred             eEEEECC-CCCCHHHHHHHHHHhCC
Confidence            4788888 99999999888877763

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.24  E-value=0.034  Score=41.28  Aligned_cols=31  Identities=29%  Similarity=0.351  Sum_probs=24.7

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGIS   37 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~   37 (233)
                      .+.+.+.|+ +|+||||++..+|..+....+.
T Consensus        35 ~~~lLl~Gp-~G~GKttl~~~la~~l~~~~~~   65 (227)
T d1sxjc2          35 LPHLLFYGP-PGTGKTSTIVALAREIYGKNYS   65 (227)
T ss_dssp             CCCEEEECS-SSSSHHHHHHHHHHHHHTTSHH
T ss_pred             CCeEEEECC-CCCChhHHHHHHHHHhhcCCCc
Confidence            345778888 9999999999999988655443

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.23  E-value=0.02  Score=43.05  Aligned_cols=28  Identities=18%  Similarity=0.251  Sum_probs=24.2

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcC
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRG   35 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G   35 (233)
                      |.|+|-|. -|+||||++-.|+..|...+
T Consensus         3 k~IviEG~-~GsGKST~~~~L~~~l~~~~   30 (241)
T d2ocpa1           3 RRLSIEGN-IAVGKSTFVKLLTKTYPEWH   30 (241)
T ss_dssp             EEEEEEEC-TTSSHHHHHHHHHHHCTTSE
T ss_pred             eEEEEECC-CCCcHHHHHHHHHHHHhhcC
Confidence            67899988 99999999999998886554

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.93  E-value=0.046  Score=43.21  Aligned_cols=33  Identities=24%  Similarity=0.487  Sum_probs=26.3

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..++.++|+ +|||||.++..||..+   +.+..-+|
T Consensus        52 ~~~~lf~Gp-~GvGKT~lak~la~~l---~~~~i~~d   84 (315)
T d1r6bx3          52 VGSFLFAGP-TGVGKTEVTVQLSKAL---GIELLRFD   84 (315)
T ss_dssp             SEEEEEECS-TTSSHHHHHHHHHHHH---TCEEEEEE
T ss_pred             ceEEEEECC-CcchhHHHHHHHHhhc---cCCeeEec
Confidence            347888888 9999999999999987   44555555

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=92.79  E-value=0.045  Score=44.19  Aligned_cols=33  Identities=24%  Similarity=0.379  Sum_probs=27.0

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.+.+.|+ +|+|||++|..||..+   |.++..+.
T Consensus       154 ~~~~~~~g~-~~~gk~~~~~~~~~~~---~~~~i~in  186 (362)
T d1svma_         154 KRYWLFKGP-IDSGKTTLAAALLELC---GGKALNVN  186 (362)
T ss_dssp             CCEEEEECS-TTSSHHHHHHHHHHHH---CCEEECCS
T ss_pred             cCeEEEECC-CCCCHHHHHHHHHHHc---CCCEEEEE
Confidence            357888888 9999999999999888   66776554

>d2vo1a1 c.37.1.10 (A:1-273) CTP synthase PyrG, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: CTP synthase PyrG, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.76  E-value=0.096  Score=39.97  Aligned_cols=37  Identities=27%  Similarity=0.424  Sum_probs=33.8

Q ss_pred             ceeEEEEe-CCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITG-TNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~-~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ||-|+||| -=+|.||=.+|+.|+..|+.+|++|..+|
T Consensus         1 mKyifVtGGV~S~lGKGi~~aSig~ll~~~g~~V~~~K   38 (273)
T d2vo1a1           1 MKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIK   38 (273)
T ss_dssp             CEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CeEEEEeCCcccccchHHHHHHHHHHHHhCCceeEEEe
Confidence            68899998 45899999999999999999999999976

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.74  E-value=0.031  Score=40.44  Aligned_cols=25  Identities=24%  Similarity=0.441  Sum_probs=20.2

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFK   32 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~   32 (233)
                      |.|.|+|+ +|+||||++-.|+..+.
T Consensus         2 rpIvl~Gp-sG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           2 RPIVISGP-SGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             CCEEEECC-TTSSHHHHHHHHHHHCT
T ss_pred             CeEEEECC-CCCCHHHHHHHHHHhCC
Confidence            45888888 99999999888766553

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.72  E-value=0.044  Score=39.44  Aligned_cols=24  Identities=17%  Similarity=0.358  Sum_probs=18.8

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSE   30 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~   30 (233)
                      -|.|.|+|+ .|+||||+...|...
T Consensus         3 ~k~ivl~Gp-sg~GK~tl~~~L~~~   26 (178)
T d1kgda_           3 RKTLVLLGA-HGVGRRHIKNTLITK   26 (178)
T ss_dssp             CCEEEEECC-TTSSHHHHHHHHHHH
T ss_pred             CCcEEEECC-CCCCHHHHHHHHHHh
Confidence            467788777 999999998766543

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.68  E-value=0.03  Score=41.95  Aligned_cols=36  Identities=22%  Similarity=0.082  Sum_probs=27.2

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHc------CCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKR------GISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~------G~~Vl~~d   42 (233)
                      -.++.|+|. +|+|||++|.+++....+.      +..+.+++
T Consensus        37 G~~~~i~G~-~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~   78 (258)
T d1v5wa_          37 MAITEAFGE-FRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID   78 (258)
T ss_dssp             SEEEEEECC-TTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred             CEEEEEECC-CCCCHHHHHHHHHHHHHhhhhcccccceEEEec
Confidence            457778887 9999999999999866543      34566666

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.62  E-value=0.058  Score=42.61  Aligned_cols=36  Identities=19%  Similarity=0.304  Sum_probs=28.1

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ..++.++|+ +|+|||.+|..||..|-..+.+...+|
T Consensus        53 ~~~~lf~Gp-~G~GKt~lak~la~~l~~~~~~~~~~~   88 (315)
T d1qvra3          53 IGSFLFLGP-TGVGKTELAKTLAATLFDTEEAMIRID   88 (315)
T ss_dssp             SEEEEEBSC-SSSSHHHHHHHHHHHHHSSGGGEEEEC
T ss_pred             ceEEEEECC-CcchHHHHHHHHHHHhcCCCcceEEEe
Confidence            347888898 999999999999999964444555554

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=92.43  E-value=0.083  Score=39.73  Aligned_cols=33  Identities=18%  Similarity=0.197  Sum_probs=25.4

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.+.|.|. +|+|||++...++..+   +....+++
T Consensus        29 ~~~i~i~G~-~G~GKTsLl~~~~~~~---~~~~~~i~   61 (283)
T d2fnaa2          29 APITLVLGL-RRTGKSSIIKIGINEL---NLPYIYLD   61 (283)
T ss_dssp             SSEEEEEES-TTSSHHHHHHHHHHHH---TCCEEEEE
T ss_pred             CCEEEEEcC-CCCcHHHHHHHHHHHC---CCCeEEEE
Confidence            357888888 9999999988776544   66666666

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.37  E-value=0.069  Score=40.77  Aligned_cols=34  Identities=24%  Similarity=0.249  Sum_probs=27.2

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKP   43 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp   43 (233)
                      .+.+.+.|+ +|+|||+++..+|..+   |.++..+++
T Consensus        38 ~~giLL~Gp-pGtGKT~l~~ala~~~---~~~~~~i~~   71 (258)
T d1e32a2          38 PRGILLYGP-PGTGKTLIARAVANET---GAFFFLING   71 (258)
T ss_dssp             CCEEEEECC-TTSSHHHHHHHHHHHT---TCEEEEECH
T ss_pred             CceeEEecC-CCCCchHHHHHHHHHh---CCeEEEEEc
Confidence            356888888 9999999988887765   777777763

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=92.26  E-value=0.057  Score=37.42  Aligned_cols=25  Identities=28%  Similarity=0.398  Sum_probs=18.7

Q ss_pred             CCCCceeEEEEeCCCCCcHHHHHHHHH
Q psy14904          2 INKNFLHYFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         2 ~~~~~~~i~i~~~kggvGKTt~a~~La   28 (233)
                      |.+.+| |++.|. +||||||+...+.
T Consensus         2 m~ke~k-I~ivG~-~~vGKSSLi~~~~   26 (169)
T d1upta_           2 MTREMR-ILILGL-DGAGKTTILYRLQ   26 (169)
T ss_dssp             CSSCEE-EEEECS-TTSSHHHHHHHHH
T ss_pred             CCcceE-EEEECC-CCCCHHHHHHHHh
Confidence            445566 778886 8999999987653

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=92.23  E-value=0.044  Score=41.46  Aligned_cols=32  Identities=25%  Similarity=0.383  Sum_probs=28.6

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ||++.|||..+|.|+     .+|..|+++|++|.+.+
T Consensus         1 mkVvlITGas~GIG~-----aiA~~la~~Ga~V~~~~   32 (257)
T d1fjha_           1 MSIIVISGCATGIGA-----ATRKVLEAAGHQIVGID   32 (257)
T ss_dssp             CCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEE
Confidence            799999999888887     47889999999999887

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.08  E-value=0.077  Score=40.71  Aligned_cols=33  Identities=24%  Similarity=0.326  Sum_probs=27.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .+.|.+.|+ +|+|||+++..+|..+   |.+...++
T Consensus        41 ~~giLL~Gp-~GtGKT~l~~ala~~~---~~~~~~~~   73 (265)
T d1r7ra3          41 SKGVLFYGP-PGCGKTLLAKAIANEC---QANFISIK   73 (265)
T ss_dssp             CCEEEEBCC-TTSSHHHHHHHHHHHT---TCEEEEEC
T ss_pred             CCeEEEECC-CCCcchhHHHHHHHHh---CCcEEEEE
Confidence            457888888 9999999999999888   67776666

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=91.57  E-value=0.088  Score=38.71  Aligned_cols=26  Identities=15%  Similarity=0.140  Sum_probs=22.5

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKK   33 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~   33 (233)
                      +.+.+.|+ .|+||||++..+|..|..
T Consensus        25 h~lLl~Gp-~G~GKtt~a~~~a~~l~~   50 (207)
T d1a5ta2          25 HALLIQAL-PGMGDDALIYALSRYLLC   50 (207)
T ss_dssp             SEEEEECC-TTSCHHHHHHHHHHHHTC
T ss_pred             eEEEEECC-CCCcHHHHHHHHHHhccc
Confidence            45888888 999999999999998863

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=91.56  E-value=0.15  Score=35.12  Aligned_cols=37  Identities=19%  Similarity=0.031  Sum_probs=32.0

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeee
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPI   44 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~   44 (233)
                      ..=.|+|+ -.+||||--+..+..+..+|++|++++|-
T Consensus         8 ~l~lI~Gp-MfSGKTteLi~~~~~~~~~g~~vl~i~~~   44 (141)
T d1xx6a1           8 WVEVIVGP-MYSGKSEELIRRIRRAKIAKQKIQVFKPE   44 (141)
T ss_dssp             EEEEEECS-TTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             eEEEEEec-cccHHHHHHHHHHHHhhhcCCcEEEEEec
Confidence            44456777 99999999999999999999999999964

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.40  E-value=0.07  Score=38.87  Aligned_cols=35  Identities=17%  Similarity=0.247  Sum_probs=23.7

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEee
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKP   43 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp   43 (233)
                      .+.+..+ +|+|||+++.-.+.....++.+++++=|
T Consensus        42 ~~il~ap-TGsGKT~~a~l~i~~~~~~~~~vl~l~P   76 (202)
T d2p6ra3          42 NLLLAMP-TAAGKTLLAEMAMVREAIKGGKSLYVVP   76 (202)
T ss_dssp             CEEEECS-SHHHHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CEEEEcC-CCCchhHHHHHHHHHHhhccCcceeecc
Confidence            4556666 7999999875444433456678888754

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=91.34  E-value=0.075  Score=37.39  Aligned_cols=23  Identities=30%  Similarity=0.366  Sum_probs=17.5

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHH
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La   28 (233)
                      +.+| |+|+|. +||||||+...|.
T Consensus        14 k~~k-I~vvG~-~~~GKSsLi~rl~   36 (177)
T d1zj6a1          14 QEHK-VIIVGL-DNAGKTTILYQFS   36 (177)
T ss_dssp             SCEE-EEEEES-TTSSHHHHHHHHH
T ss_pred             CeEE-EEEECC-CCCCHHHHHHHHh
Confidence            3455 778888 8999999987653

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=91.28  E-value=0.15  Score=36.57  Aligned_cols=30  Identities=30%  Similarity=0.420  Sum_probs=22.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG   40 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~   40 (233)
                      -+-+.++|. +|+||||++..    |.++|++...
T Consensus        14 g~gvl~~G~-sG~GKStlal~----l~~~g~~lv~   43 (176)
T d1kkma_          14 GLGVLITGD-SGVGKSETALE----LVQRGHRLIA   43 (176)
T ss_dssp             TEEEEEECC-TTSCHHHHHHH----HHHTTCEEEE
T ss_pred             CEEEEEEeC-CCCCHHHHHHH----HHHcCCeEEe
Confidence            356788877 99999998864    5568986544

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.21  E-value=0.14  Score=36.83  Aligned_cols=34  Identities=26%  Similarity=0.290  Sum_probs=24.0

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHH-HcCCeeeEEee
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFK-KRGISCIGMKP   43 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~-~~G~~Vl~~dp   43 (233)
                      +| |..+ +|+|||+++..++.... +.|.+++++=|
T Consensus        26 ~l-v~~p-TGsGKT~i~~~~~~~~~~~~~~~il~i~P   60 (200)
T d1wp9a1          26 CL-IVLP-TGLGKTLIAMMIAEYRLTKYGGKVLMLAP   60 (200)
T ss_dssp             EE-EECC-TTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred             eE-EEeC-CCCcHHHHHHHHHHHHHHhcCCcEEEEcC
Confidence            44 4444 79999999887776544 46888888753

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=91.20  E-value=0.082  Score=38.92  Aligned_cols=26  Identities=23%  Similarity=0.284  Sum_probs=21.0

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFK   32 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~   32 (233)
                      .+.|.|+|+ +|+||||+.-.|.....
T Consensus         2 G~livi~GP-SG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           2 GTLYIVSAP-SGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             CCEEEEECC-TTSCHHHHHHHHHHHSC
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHhhCC
Confidence            467788888 99999999988776654

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=91.16  E-value=0.13  Score=41.72  Aligned_cols=35  Identities=23%  Similarity=0.344  Sum_probs=27.5

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHc-------CCeeeEEee
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKR-------GISCIGMKP   43 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~-------G~~Vl~~dp   43 (233)
                      ...++|. +|||||++.-+||..+...       ++++..+|+
T Consensus        45 n~llvG~-~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~   86 (387)
T d1qvra2          45 NPVLIGE-PGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM   86 (387)
T ss_dssp             CCEEEEC-TTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC
T ss_pred             CCeEECC-CCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeH
Confidence            3556677 8999999999999998764       467777773

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.77  E-value=0.18  Score=34.29  Aligned_cols=35  Identities=20%  Similarity=0.225  Sum_probs=30.5

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeee
Q psy14904          9 YFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPI   44 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~   44 (233)
                      =.|+|+ -.+||||--...+..+..+|++|++++|-
T Consensus         5 ~li~Gp-MfsGKTt~Li~~~~~~~~~g~~v~~ikp~   39 (133)
T d1xbta1           5 QVILGP-MFSGKSTELMRRVRRFQIAQYKCLVIKYA   39 (133)
T ss_dssp             EEEECC-TTSCHHHHHHHHHHHHHTTTCCEEEEEET
T ss_pred             EEEEec-ccCHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence            356777 89999999999999998999999999954

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=90.70  E-value=0.081  Score=42.64  Aligned_cols=26  Identities=23%  Similarity=0.388  Sum_probs=22.0

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      +.+.|.+.|+ +|||||-+|-.||..+
T Consensus        67 p~~niLfiGP-TGvGKTElAk~LA~~~   92 (364)
T d1um8a_          67 SKSNILLIGP-TGSGKTLMAQTLAKHL   92 (364)
T ss_dssp             CCCCEEEECC-TTSSHHHHHHHHHHHT
T ss_pred             CCcceeeeCC-CCccHHHHHHHHHhhc
Confidence            4567888898 8999999999998775

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=90.14  E-value=0.27  Score=31.41  Aligned_cols=32  Identities=13%  Similarity=0.159  Sum_probs=27.6

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ++.|.+.|- ||+|-|.    ||..|.++|+.|.--|
T Consensus         8 ~~~ihfiGi-gG~GMs~----LA~~L~~~G~~VsGSD   39 (96)
T d1p3da1           8 VQQIHFIGI-GGAGMSG----IAEILLNEGYQISGSD   39 (96)
T ss_dssp             CCEEEEETT-TSTTHHH----HHHHHHHHTCEEEEEE
T ss_pred             CCEEEEEEE-CHHHHHH----HHHHHHhCCCEEEEEe
Confidence            567999998 9999976    6899999999998776

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=90.06  E-value=0.22  Score=37.58  Aligned_cols=67  Identities=13%  Similarity=0.091  Sum_probs=39.6

Q ss_pred             cCCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCcHH-------HHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904        115 NLTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGCIN-------NALLSLEAINSRGLKLIGWVANHTQ  186 (233)
Q Consensus       115 ~~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~~~-------~~~~~~~~l~~~~~~i~GiVlN~~~  186 (233)
                      ..+.+.+|||||+..  +..   ..--......-+++|+++..+...       ++...+..+...+++.+-+++|+++
T Consensus       100 ~~~~i~~iDtPGH~d--f~~---~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~i~~iiv~iNKmD  173 (245)
T d1r5ba3         100 EHRRFSLLDAPGHKG--YVT---NMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMD  173 (245)
T ss_dssp             SSEEEEECCCCC----------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTT
T ss_pred             ccceeeeeccccccc--chh---hhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHcCCCeEEEEEEcCC
Confidence            356799999998753  111   111111222357888887765433       4566666777788886778899998

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=89.90  E-value=0.093  Score=43.44  Aligned_cols=32  Identities=25%  Similarity=0.310  Sum_probs=24.7

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.|.+.|+ +|||||.+|..||..+   +-.-..+|
T Consensus        50 sNILliGP-TGvGKTlLAr~LAk~l---~VPFv~~d   81 (443)
T d1g41a_          50 KNILMIGP-TGVGKTEIARRLAKLA---NAPFIKVE   81 (443)
T ss_dssp             CCEEEECC-TTSSHHHHHHHHHHHT---TCCEEEEE
T ss_pred             ccEEEECC-CCCCHHHHHHHHHHHh---CCCEEEee
Confidence            46888888 8999999999999876   44444444

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=89.86  E-value=0.19  Score=36.01  Aligned_cols=30  Identities=23%  Similarity=0.399  Sum_probs=22.9

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG   40 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~   40 (233)
                      -+-+.|+|. +|+||||++..|.    ++|++...
T Consensus        15 g~gvli~G~-sG~GKS~lal~l~----~~G~~lva   44 (177)
T d1knxa2          15 GVGVLLTGR-SGIGKSECALDLI----NKNHLFVG   44 (177)
T ss_dssp             TEEEEEEES-SSSSHHHHHHHHH----TTTCEEEE
T ss_pred             CEEEEEEcC-CCCCHHHHHHHHH----HcCCceec
Confidence            356788888 9999999987654    57886544

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=89.74  E-value=0.39  Score=32.82  Aligned_cols=36  Identities=28%  Similarity=0.288  Sum_probs=31.3

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeee
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKPI   44 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~   44 (233)
                      .=+|+|+ -.+||||=-+..+..+..+|++|++++|-
T Consensus         4 L~~i~Gp-MfsGKTteLi~~~~~~~~~~~kv~~ikp~   39 (139)
T d2b8ta1           4 IEFITGP-MFAGKTAELIRRLHRLEYADVKYLVFKPK   39 (139)
T ss_dssp             EEEEECS-TTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             EEEEEcc-ccCHHHHHHHHHHHHHHHCCCcEEEEEEc
Confidence            3456777 89999999999999999999999999964

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=89.63  E-value=0.13  Score=40.68  Aligned_cols=24  Identities=33%  Similarity=0.350  Sum_probs=20.3

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFK   32 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~   32 (233)
                      ++.+.|. +|+|||.++-+||..+.
T Consensus       125 ~~l~~G~-pG~GKT~la~ala~~~~  148 (321)
T d1w44a_         125 MVIVTGK-GNSGKTPLVHALGEALG  148 (321)
T ss_dssp             EEEEECS-SSSCHHHHHHHHHHHHH
T ss_pred             eEEEECC-CCccHHHHHHHHHHHhc
Confidence            3455777 99999999999999885

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=89.60  E-value=0.12  Score=37.07  Aligned_cols=23  Identities=22%  Similarity=0.443  Sum_probs=19.8

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHH
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La   28 (233)
                      ..+.|+|.|. +|+||||+.-.|.
T Consensus        22 ~~~~I~lvG~-~n~GKSTLin~L~   44 (195)
T d1svia_          22 GLPEIALAGR-SNVGKSSFINSLI   44 (195)
T ss_dssp             CCCEEEEEEB-TTSSHHHHHHHHH
T ss_pred             CCCEEEEECC-CCCCHHHHHHHhc
Confidence            3557999998 9999999998886

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=89.58  E-value=0.16  Score=35.76  Aligned_cols=24  Identities=21%  Similarity=0.436  Sum_probs=20.5

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFK   32 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~   32 (233)
                      +|++.|. =|+||||++.+++.+|.
T Consensus        35 ii~L~G~-LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          35 MVYLNGD-LGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             EEEEECS-TTSSHHHHHHHHHHHTT
T ss_pred             EEEEecC-CCccHHHHHHHHHhhcc
Confidence            5666666 99999999999999984

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=89.32  E-value=0.18  Score=37.85  Aligned_cols=35  Identities=14%  Similarity=0.132  Sum_probs=29.7

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEee
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIGMKP   43 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp   43 (233)
                      .-.+.|- .|+|||-++...+.....+|++|+++=|
T Consensus        78 ~~LL~Gd-vGsGKT~V~~~a~~~~~~~g~qv~~l~P  112 (233)
T d2eyqa3          78 DRLVCGD-VGFGKTEVAMRAAFLAVDNHKQVAVLVP  112 (233)
T ss_dssp             EEEEECC-CCTTTHHHHHHHHHHHHTTTCEEEEECS
T ss_pred             CeEEEcC-CCCCcHHHHHHHHHHHHHcCCceEEEcc
Confidence            3455555 8999999999999999999999999764

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=89.15  E-value=0.078  Score=42.21  Aligned_cols=34  Identities=15%  Similarity=0.263  Sum_probs=27.4

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      -.|+|-|. -|+||||++..|+..+..++ .+.++.
T Consensus         7 ~rI~iEG~-iGsGKSTl~~~L~~~l~~~~-~v~~~~   40 (333)
T d1p6xa_           7 VRIYLDGV-YGIGKSTTGRVMASAASGGS-PTLYFP   40 (333)
T ss_dssp             EEEEEECS-TTSSHHHHHHHHHSGGGCSS-CEEEEC
T ss_pred             EEEEEECC-ccCCHHHHHHHHHHHhccCC-CeEEEe
Confidence            36888888 89999999999999997665 555553

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.79  E-value=0.15  Score=36.94  Aligned_cols=21  Identities=29%  Similarity=0.423  Sum_probs=17.7

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La   28 (233)
                      |.|+|.|. +|+||||+.-.|.
T Consensus         1 k~V~ivG~-~~~GKTsLl~~l~   21 (207)
T d2fh5b1           1 RAVLFVGL-CDSGKTLLFVRLL   21 (207)
T ss_dssp             CEEEEECS-TTSSHHHHHHHHH
T ss_pred             CEEEEECC-CCCCHHHHHHHHH
Confidence            57999999 9999999876654

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=88.71  E-value=0.2  Score=37.38  Aligned_cols=26  Identities=31%  Similarity=0.466  Sum_probs=21.3

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKK   33 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~   33 (233)
                      +.+.+.|+ +|+||||++..++..+-.
T Consensus        35 ~~~Ll~Gp-~G~GKtt~a~~~~~~l~~   60 (239)
T d1njfa_          35 HAYLFSGT-RGVGKTSIARLLAKGLNC   60 (239)
T ss_dssp             SEEEEECS-TTSSHHHHHHHHHHHHHC
T ss_pred             eeEEEECC-CCCcHHHHHHHHHHHhcC
Confidence            34677777 999999999999888854

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=88.41  E-value=0.19  Score=35.73  Aligned_cols=29  Identities=31%  Similarity=0.418  Sum_probs=21.7

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeee
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCI   39 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl   39 (233)
                      -+-+.|+|. +|+||||++..    |.++|++.+
T Consensus        15 g~gvli~G~-sg~GKS~la~~----l~~~g~~li   43 (169)
T d1ko7a2          15 GVGVLITGD-SGIGKSETALE----LIKRGHRLV   43 (169)
T ss_dssp             TEEEEEEES-TTSSHHHHHHH----HHHTTCEEE
T ss_pred             CEEEEEEeC-CCCCHHHHHHH----HHHcCCeEE
Confidence            356888888 99999997754    556788644

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=88.38  E-value=0.16  Score=35.52  Aligned_cols=20  Identities=30%  Similarity=0.539  Sum_probs=17.5

Q ss_pred             eEEEEeCCCCCcHHHHHHHHH
Q psy14904          8 HYFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La   28 (233)
                      +|+|.|. +|+||||+.-.|.
T Consensus         2 ~V~liG~-~n~GKSsLi~~L~   21 (171)
T d1mkya1           2 TVLIVGR-PNVGKSTLFNKLV   21 (171)
T ss_dssp             EEEEECC-TTSSHHHHHHHHH
T ss_pred             EEEEECC-CCCCHHHHHHHHh
Confidence            5888988 9999999988775

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.28  E-value=0.19  Score=35.23  Aligned_cols=24  Identities=13%  Similarity=0.487  Sum_probs=17.6

Q ss_pred             CCCceeEEEEeCCCCCcHHHHHHHHH
Q psy14904          3 NKNFLHYFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         3 ~~~~~~i~i~~~kggvGKTt~a~~La   28 (233)
                      .++.| |++.|. +||||||+...+.
T Consensus         3 ~~~~K-i~lvG~-~~vGKTsLi~r~~   26 (171)
T d2erya1           3 QEKYR-LVVVGG-GGVGKSALTIQFI   26 (171)
T ss_dssp             CCEEE-EEEEEC-TTSSHHHHHHHHH
T ss_pred             CcceE-EEEECC-CCCCHHHHHHHHH
Confidence            44456 666775 8999999987664

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.20  E-value=0.15  Score=38.73  Aligned_cols=26  Identities=15%  Similarity=0.207  Sum_probs=21.9

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFK   32 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~   32 (233)
                      -..++|+|. .|+||||+...|+..+.
T Consensus        41 Ge~iaivG~-sGsGKSTLl~ll~gl~~   66 (253)
T d3b60a1          41 GKTVALVGR-SGSGKSTIASLITRFYD   66 (253)
T ss_dssp             TCEEEEEEC-TTSSHHHHHHHHTTTTC
T ss_pred             CCEEEEECC-CCChHHHHHHHHhcccC
Confidence            457999998 99999999988876664

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=87.85  E-value=0.14  Score=38.65  Aligned_cols=27  Identities=15%  Similarity=0.065  Sum_probs=22.7

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKK   33 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~   33 (233)
                      ...++|+|. .|+||||+...|+..+.-
T Consensus        29 Ge~vaIvG~-sGsGKSTLl~ll~gl~~p   55 (241)
T d2pmka1          29 GEVIGIVGR-SGSGKSTLTKLIQRFYIP   55 (241)
T ss_dssp             TCEEEEECS-TTSSHHHHHHHHTTSSCC
T ss_pred             CCEEEEECC-CCCCHHHHHHHHHhcCCC
Confidence            457999999 899999999888877653

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=87.82  E-value=0.11  Score=41.21  Aligned_cols=34  Identities=18%  Similarity=0.237  Sum_probs=26.8

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +.|.|+|. +|+||||+...|+..+- ...|+..+.
T Consensus       167 ~nili~G~-tgSGKTT~l~al~~~i~-~~~rivtiE  200 (323)
T d1g6oa_         167 KNVIVCGG-TGSGKTTYIKSIMEFIP-KEERIISIE  200 (323)
T ss_dssp             CCEEEEES-TTSSHHHHHHHHGGGSC-TTCCEEEEE
T ss_pred             CCEEEEee-ccccchHHHHHHhhhcc-cccceeecc
Confidence            45888888 99999999988887664 466777774

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.80  E-value=0.19  Score=36.16  Aligned_cols=21  Identities=33%  Similarity=0.371  Sum_probs=17.9

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHH
Q psy14904          7 LHYFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La   28 (233)
                      ++|+|.|. +|+||||+.-.|.
T Consensus         4 p~V~lvG~-~n~GKTSLln~l~   24 (209)
T d1nrjb_           4 PSIIIAGP-QNSGKTSLLTLLT   24 (209)
T ss_dssp             CEEEEECS-TTSSHHHHHHHHH
T ss_pred             CEEEEECC-CCCCHHHHHHHHh
Confidence            47899999 9999999877775

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=87.42  E-value=0.19  Score=34.83  Aligned_cols=21  Identities=29%  Similarity=0.392  Sum_probs=16.0

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHH
Q psy14904          5 NFLHYFITGTNTNIGKTIISCAL   27 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~L   27 (233)
                      .+| |+|.|. +|+||||+...|
T Consensus         2 ~~k-i~ivG~-~~~GKTsLi~~l   22 (165)
T d1ksha_           2 ELR-LLMLGL-DNAGKTTILKKF   22 (165)
T ss_dssp             CEE-EEEECS-TTSSHHHHHHHH
T ss_pred             cEE-EEEECC-CCCCHHHHHHHH
Confidence            345 678888 899999988654

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=87.40  E-value=0.2  Score=38.44  Aligned_cols=37  Identities=24%  Similarity=0.230  Sum_probs=24.5

Q ss_pred             eeEEEEeCCCCCcHHHH-HHHHHHHHHHcCCeeeEEeee
Q psy14904          7 LHYFITGTNTNIGKTII-SCALLSEFKKRGISCIGMKPI   44 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~-a~~La~~l~~~G~~Vl~~dp~   44 (233)
                      +...|.+. +|+|||+. ...+......+|.+++++=|.
T Consensus        10 ~~~lv~~~-TGsGKT~~~l~~~~~~~~~~~~~~lvi~Pt   47 (305)
T d2bmfa2          10 RLTIMDLH-PGAGKTKRYLPAIVREAIKRGLRTLILAPT   47 (305)
T ss_dssp             CEEEECCC-TTSSTTTTHHHHHHHHHHHHTCCEEEEESS
T ss_pred             CcEEEEEC-CCCCHHHHHHHHHHHHHHhcCCEEEEEccH
Confidence            44444444 89999963 335555556678999998653

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=87.34  E-value=0.21  Score=34.87  Aligned_cols=21  Identities=29%  Similarity=0.264  Sum_probs=16.0

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCAL   27 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~L   27 (233)
                      ...|++.|. +||||||+...|
T Consensus        13 ~~kI~lvG~-~~vGKTsLl~~l   33 (186)
T d1f6ba_          13 TGKLVFLGL-DNAGKTTLLHML   33 (186)
T ss_dssp             CEEEEEEEE-TTSSHHHHHHHH
T ss_pred             CCEEEEECC-CCCCHHHHHHHH
Confidence            345778887 799999996554

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=87.30  E-value=0.22  Score=33.87  Aligned_cols=19  Identities=32%  Similarity=0.398  Sum_probs=15.8

Q ss_pred             EEEEeCCCCCcHHHHHHHHH
Q psy14904          9 YFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La   28 (233)
                      |.|.|. +||||||+...|.
T Consensus         3 ivlvG~-~~vGKSsLi~~l~   21 (160)
T d1r8sa_           3 ILMVGL-DAAGKTTILYKLK   21 (160)
T ss_dssp             EEEECS-TTSSHHHHHHHHH
T ss_pred             EEEECC-CCCCHHHHHHHHh
Confidence            567787 8999999997764

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=87.19  E-value=0.2  Score=37.87  Aligned_cols=34  Identities=15%  Similarity=-0.007  Sum_probs=25.3

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG   40 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~   40 (233)
                      -..++|.|. .|+||||+...|+..+.-..=+|.+
T Consensus        28 Ge~vaivG~-sGsGKSTLl~ll~gl~~p~~G~I~i   61 (242)
T d1mv5a_          28 NSIIAFAGP-SGGGKSTIFSLLERFYQPTAGEITI   61 (242)
T ss_dssp             TEEEEEECC-TTSSHHHHHHHHTTSSCCSBSCEEE
T ss_pred             CCEEEEECC-CCCCHHHHHHHHHHhhCCCCCEEEE
Confidence            468999999 8999999998888777533224444

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.83  E-value=0.2  Score=38.07  Aligned_cols=34  Identities=15%  Similarity=0.140  Sum_probs=25.1

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG   40 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~   40 (233)
                      -..++|.|. .|+||||+...|+..+.-..=+|.+
T Consensus        40 Ge~vaivG~-sGsGKSTLl~li~gl~~p~~G~I~i   73 (251)
T d1jj7a_          40 GEVTALVGP-NGSGKSTVAALLQNLYQPTGGQLLL   73 (251)
T ss_dssp             TCEEEEECS-TTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred             CCEEEEECC-CCCcHHHHHHHHhcccCCCcCEEEE
Confidence            467999999 9999999998887766433224443

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=86.71  E-value=0.22  Score=37.58  Aligned_cols=26  Identities=15%  Similarity=0.093  Sum_probs=21.4

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFK   32 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~   32 (233)
                      -.+++|.|. .|+||||+...|+..+.
T Consensus        31 Ge~~~iiG~-sGsGKSTLl~~i~Gl~~   56 (240)
T d3dhwc1          31 GQIYGVIGA-SGAGKSTLIRCVNLLER   56 (240)
T ss_dssp             SCEEEEEES-TTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECC-CCCCHHHHHHHHcCCcc
Confidence            457899999 99999999887776553

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.55  E-value=0.28  Score=34.08  Aligned_cols=22  Identities=18%  Similarity=0.306  Sum_probs=16.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La   28 (233)
                      ...|+|.|. .||||||+...|.
T Consensus         4 ~~Kv~liG~-~~vGKTsLl~~~~   25 (167)
T d1xtqa1           4 SRKIAILGY-RSVGKSSLTIQFV   25 (167)
T ss_dssp             EEEEEEEES-TTSSHHHHHHHHH
T ss_pred             ceEEEEECC-CCcCHHHHHHHHH
Confidence            345777887 8999999876553

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.54  E-value=0.36  Score=36.81  Aligned_cols=33  Identities=21%  Similarity=0.356  Sum_probs=28.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEee
Q psy14904         10 FITGTNTNIGKTIISCALLSEFKKRGISCIGMKP   43 (233)
Q Consensus        10 ~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp   43 (233)
                      .+.|- .|+|||-++...+......|++|+++=|
T Consensus       108 LL~Gd-vGSGKT~Va~~a~~~~~~~g~q~~~m~P  140 (264)
T d1gm5a3         108 LLQGD-VGSGKTVVAQLAILDNYEAGFQTAFMVP  140 (264)
T ss_dssp             EEECC-SSSSHHHHHHHHHHHHHHHTSCEEEECS
T ss_pred             eeecc-ccccccHHHHHHHHHHHhcccceeEEee
Confidence            34444 7999999999999999999999999754

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=86.51  E-value=0.15  Score=40.38  Aligned_cols=34  Identities=21%  Similarity=0.333  Sum_probs=23.7

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +..|+|-|. -|+||||++..|+..+..+  .|.++.
T Consensus         4 ~lrI~IEG~-iGsGKTTl~~~La~~l~~~--~v~~~~   37 (329)
T d1e2ka_           4 LLRVYIDGP-HGMGKTTTTQLLVALGSRD--DIVYVP   37 (329)
T ss_dssp             EEEEEECSC-TTSSHHHHHHHHTC----C--CEEEEC
T ss_pred             ceEEEEECC-cCCCHHHHHHHHHHHhCCC--CeEEec
Confidence            345888888 8999999999999888643  566653

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.46  E-value=0.26  Score=37.99  Aligned_cols=26  Identities=35%  Similarity=0.350  Sum_probs=22.2

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFK   32 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~   32 (233)
                      -..++|.|. .|+||||+...|+..+.
T Consensus        62 Ge~vaivG~-nGsGKSTLl~~i~Gl~~   87 (281)
T d1r0wa_          62 GEMLAITGS-TGSGKTSLLMLILGELE   87 (281)
T ss_dssp             TCEEEEEES-TTSSHHHHHHHHHTSSC
T ss_pred             CCEEEEECC-CCChHHHHHHHHhCCCc
Confidence            468999999 99999999988877664

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.35  E-value=0.22  Score=37.11  Aligned_cols=22  Identities=18%  Similarity=0.160  Sum_probs=18.2

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La   28 (233)
                      -++.+++|+ +||||||+.-.|.
T Consensus        95 ~kt~~~~G~-SGVGKSTLiN~L~  116 (225)
T d1u0la2          95 GKISTMAGL-SGVGKSSLLNAIN  116 (225)
T ss_dssp             SSEEEEECS-TTSSHHHHHHHHS
T ss_pred             CCeEEEECC-CCCCHHHHHHhhc
Confidence            457788888 9999999997764

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.25  E-value=0.56  Score=33.93  Aligned_cols=38  Identities=16%  Similarity=0.110  Sum_probs=29.5

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcC---CeeeEEee
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRG---ISCIGMKP   43 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G---~~Vl~~dp   43 (233)
                      ....+.+.|. +|+|||++|..|+..+...-   ..+..++|
T Consensus        14 ~~~~~l~~G~-~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~   54 (198)
T d2gnoa2          14 EGISILINGE-DLSYPREVSLELPEYVEKFPPKASDVLEIDP   54 (198)
T ss_dssp             SSEEEEEECS-SSSHHHHHHHHHHHHHHTSCCCTTTEEEECC
T ss_pred             CCceEEEECC-CCCCHHHHHHHHHHHHhccccCCCCEEEEeC
Confidence            4567888887 99999999999999886442   24777764

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.24  E-value=0.28  Score=36.71  Aligned_cols=34  Identities=9%  Similarity=-0.072  Sum_probs=24.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG   40 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~   40 (233)
                      -.++++.|+ .|+||||+...++..+.-..-+|.+
T Consensus        26 Gei~~liGp-sGsGKSTLl~~i~Gl~~p~sG~I~i   59 (232)
T d2awna2          26 GEFVVFVGP-SGCGKSTLLRMIAGLETITSGDLFI   59 (232)
T ss_dssp             TCEEEEECC-TTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred             CCEEEEECC-CCChHHHHHHHHhcCCCCCCCEEEE
Confidence            458999999 9999999987777665433224443

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=85.98  E-value=0.26  Score=37.14  Aligned_cols=26  Identities=15%  Similarity=0.057  Sum_probs=22.1

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFK   32 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~   32 (233)
                      -.++++.|. .|+||||+...|+..+.
T Consensus        29 Ge~~~liG~-sGaGKSTll~~i~gl~~   54 (240)
T d1g2912          29 GEFMILLGP-SGCGKTTTLRMIAGLEE   54 (240)
T ss_dssp             TCEEEEECS-TTSSHHHHHHHHHTSSC
T ss_pred             CCEEEEECC-CCChHHHHHHHHhcCCC
Confidence            457899999 99999999988887665

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.87  E-value=0.27  Score=37.19  Aligned_cols=33  Identities=21%  Similarity=0.392  Sum_probs=29.0

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +-|++.|||..+|.|+     .+|..|+++|.+|.+.+
T Consensus         9 k~Kv~lITGas~GIG~-----aiA~~la~~G~~Vv~~~   41 (257)
T d1xg5a_           9 RDRLALVTGASGGIGA-----AVARALVQQGLKVVGCA   41 (257)
T ss_dssp             TTCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEE
Confidence            4589999999999998     57888999999998876

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=85.85  E-value=0.24  Score=37.05  Aligned_cols=26  Identities=19%  Similarity=0.016  Sum_probs=20.6

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFK   32 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~   32 (233)
                      -.+++|.|. .|+||||+...++..+.
T Consensus        31 Ge~~~iiG~-sGsGKSTLl~~i~gl~~   56 (230)
T d1l2ta_          31 GEFVSIMGP-SGSGKSTMLNIIGCLDK   56 (230)
T ss_dssp             TCEEEEECS-TTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECC-CCCCcchhhHhccCCCC
Confidence            457899999 99999999776665543

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=85.63  E-value=2.8  Score=31.20  Aligned_cols=33  Identities=21%  Similarity=0.273  Sum_probs=28.9

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +-|++.|||..+|.||     .+|..|+++|.+|.+.+
T Consensus         5 ~gK~alITGas~GIG~-----aia~~la~~G~~V~i~~   37 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGY-----AIVEELAGLGARVYTCS   37 (258)
T ss_dssp             TTCEEEEESCSSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEE
Confidence            4579999999999998     57889999999999976

>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=85.55  E-value=0.26  Score=40.52  Aligned_cols=35  Identities=9%  Similarity=0.097  Sum_probs=28.0

Q ss_pred             ceeEEEEeC------CCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGT------NTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~------kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      ||+++|++.      -||.|  +++.+|+.+|+++|++|.++=
T Consensus         1 M~i~~v~~e~~P~~~~GGl~--~vv~~La~~L~~~Gh~V~Vi~   41 (477)
T d1rzua_           1 MNVLSVSSEIYPLIKTGGLA--DVVGALPIALEAHGVRTRTLI   41 (477)
T ss_dssp             CEEEEECSCBTTTBCSSHHH--HHHHHHHHHHHTTTCEEEEEE
T ss_pred             CEEEEEEEeeecccccCcHH--HHHHHHHHHHHHcCCeEEEEe
Confidence            788888764      35656  477799999999999999873

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=85.14  E-value=0.23  Score=36.30  Aligned_cols=27  Identities=22%  Similarity=0.153  Sum_probs=22.8

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKK   33 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~   33 (233)
                      ..+++|.|. .|+||||+...|+..+.-
T Consensus        27 Gei~~l~G~-NGsGKSTLl~~i~gl~~p   53 (200)
T d1sgwa_          27 GNVVNFHGP-NGIGKTTLLKTISTYLKP   53 (200)
T ss_dssp             TCCEEEECC-TTSSHHHHHHHHTTSSCC
T ss_pred             CCEEEEECC-CCChHHHHHHHHhccccc
Confidence            457899999 999999999888877753

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.09  E-value=0.44  Score=34.42  Aligned_cols=33  Identities=15%  Similarity=0.296  Sum_probs=27.0

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .|++|+|||..|.+|+     +++..|.++|++|-+++
T Consensus         2 ~~~tVlVtGatG~iG~-----~l~~~Ll~~g~~v~v~~   34 (252)
T d2q46a1           2 NLPTVLVTGASGRTGQ-----IVYKKLKEGSDKFVAKG   34 (252)
T ss_dssp             SCCEEEEESTTSTTHH-----HHHHHHHHTTTTCEEEE
T ss_pred             CCCEEEEECCccHHHH-----HHHHHHHHCCCcEEEEE
Confidence            5889999999999996     66778888998766544

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=84.76  E-value=0.31  Score=34.21  Aligned_cols=20  Identities=25%  Similarity=0.496  Sum_probs=17.0

Q ss_pred             eEEEEeCCCCCcHHHHHHHHH
Q psy14904          8 HYFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La   28 (233)
                      .|++.|. +|+||||+.-.|.
T Consensus         2 ~I~lvG~-~nvGKSsLin~l~   21 (184)
T d2cxxa1           2 TIIFAGR-SNVGKSTLIYRLT   21 (184)
T ss_dssp             EEEEEEB-TTSSHHHHHHHHH
T ss_pred             EEEEECC-CCCCHHHHHHHHh
Confidence            5888898 9999999987764

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.54  E-value=0.31  Score=34.06  Aligned_cols=20  Identities=35%  Similarity=0.526  Sum_probs=17.0

Q ss_pred             eEEEEeCCCCCcHHHHHHHHH
Q psy14904          8 HYFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La   28 (233)
                      .|+|.|. +||||||+.-.|.
T Consensus         7 ~I~iiG~-~nvGKSSLin~L~   26 (179)
T d1egaa1           7 FIAIVGR-PNVGKSTLLNKLL   26 (179)
T ss_dssp             EEEEECS-SSSSHHHHHHHHH
T ss_pred             EEEEECC-CCCCHHHHHHHHh
Confidence            5778888 9999999988775

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.46  E-value=0.38  Score=32.58  Aligned_cols=19  Identities=32%  Similarity=0.392  Sum_probs=15.8

Q ss_pred             EEEEeCCCCCcHHHHHHHHH
Q psy14904          9 YFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La   28 (233)
                      |++.|. +||||||+...|.
T Consensus         3 I~liG~-~nvGKSSLln~l~   21 (166)
T d2qtvb1           3 LLFLGL-DNAGKTTLLHMLK   21 (166)
T ss_dssp             EEEECS-TTSSHHHHHHHHH
T ss_pred             EEEECC-CCCCHHHHHHHHh
Confidence            778888 9999999987654

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.44  E-value=0.68  Score=36.26  Aligned_cols=35  Identities=23%  Similarity=0.308  Sum_probs=27.6

Q ss_pred             CCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          2 INKNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         2 ~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      |.++|| |.|||..|     .+-.+|+..|.++|++|..+|
T Consensus        12 ~~~nMK-ILVTGgsG-----fIGs~lv~~L~~~g~~V~~~d   46 (363)
T d2c5aa1          12 PSENLK-ISITGAGG-----FIASHIARRLKHEGHYVIASD   46 (363)
T ss_dssp             TTSCCE-EEEETTTS-----HHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCCCE-EEEECCCC-----HHHHHHHHHHHHCcCEEEEEe
Confidence            346788 77998755     556688888999999999886

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=84.37  E-value=0.42  Score=33.65  Aligned_cols=20  Identities=35%  Similarity=0.546  Sum_probs=16.5

Q ss_pred             eEEEEeCCCCCcHHHHHHHHH
Q psy14904          8 HYFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La   28 (233)
                      .|+|.|. +|+||||+.-.|.
T Consensus        10 kV~iiG~-~~~GKSTLin~l~   29 (186)
T d1mkya2          10 KVAIVGR-PNVGKSTLFNAIL   29 (186)
T ss_dssp             EEEEECS-TTSSHHHHHHHHH
T ss_pred             EEEEECC-CCCCHHHHHHHHH
Confidence            4788887 9999999987664

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.25  E-value=0.31  Score=36.24  Aligned_cols=32  Identities=13%  Similarity=0.251  Sum_probs=28.1

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .|++.|||..+|.|+     .+|..|+++|.+|.++|
T Consensus         2 gK~vlITGas~GIG~-----a~a~~l~~~G~~V~~~~   33 (236)
T d1dhra_           2 ARRVLVYGGRGALGS-----RCVQAFRARNWWVASID   33 (236)
T ss_dssp             CCEEEEETTTSHHHH-----HHHHHHHTTTCEEEEEE
T ss_pred             CCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEe
Confidence            578999999999987     56788999999999986

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=84.15  E-value=0.36  Score=33.89  Aligned_cols=22  Identities=32%  Similarity=0.369  Sum_probs=17.9

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La   28 (233)
                      ...|+|.|. +|+||||+.-.|.
T Consensus         5 ~~~I~lvG~-~~~GKSSLin~l~   26 (178)
T d1wf3a1           5 SGFVAIVGK-PNVGKSTLLNNLL   26 (178)
T ss_dssp             EEEEEEECS-TTSSHHHHHHHHH
T ss_pred             CcEEEEECC-CCCCHHHHHHHHh
Confidence            347899998 9999999986653

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.15  E-value=0.54  Score=33.24  Aligned_cols=19  Identities=21%  Similarity=0.417  Sum_probs=14.8

Q ss_pred             eEEEEeCCCCCcHHHHHHHH
Q psy14904          8 HYFITGTNTNIGKTIISCAL   27 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~L   27 (233)
                      .|+|.|. +|||||++...+
T Consensus        11 Ki~lvG~-~~vGKTsLi~r~   29 (185)
T d2atxa1          11 KCVVVGD-GAVGKTCLLMSY   29 (185)
T ss_dssp             EEEEEEC-TTSSHHHHHHHH
T ss_pred             EEEEECC-CCCCHHHHHHHH
Confidence            4778887 899999976544

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.93  E-value=0.61  Score=33.77  Aligned_cols=30  Identities=23%  Similarity=0.255  Sum_probs=21.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEee
Q psy14904         10 FITGTNTNIGKTIISCALLSEFKKRGISCIGMKP   43 (233)
Q Consensus        10 ~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp   43 (233)
                      .|... .|+|||.+++.++.   +.+.+++++=|
T Consensus        89 ll~~~-tG~GKT~~a~~~~~---~~~~~~Liv~p  118 (206)
T d2fz4a1          89 CIVLP-TGSGKTHVAMAAIN---ELSTPTLIVVP  118 (206)
T ss_dssp             EEEES-SSTTHHHHHHHHHH---HSCSCEEEEES
T ss_pred             EEEeC-CCCCceehHHhHHH---HhcCceeEEEc
Confidence            34444 79999998876654   45778888753

>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Translocation ATPase SecA, nucleotide-binding domains
species: Bacillus subtilis [TaxId: 1423]

Probab=83.86  E-value=0.63  Score=35.46  Aligned_cols=52  Identities=17%  Similarity=0.078  Sum_probs=37.4

Q ss_pred             EEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEeeeecCcccCCCCCCccchHHHHHHH---HhCCC
Q psy14904         11 ITGTNTNIGKTIISCALLSEFKKRGISCIGMKPIASGAYLNNKNKIWFNEDVNLLNK---YSNSL   72 (233)
Q Consensus        11 i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~dp~~~~~~~~~~~~~l~~~d~~~~~~---~~~~~   72 (233)
                      |+--++|.|||.++.-.|..-+-.|+.|-++-    -.++      |...|+.|+..   .+|+.
T Consensus        97 iaem~TGEGKTL~a~l~a~l~al~g~~vhvvT----vNdy------LA~RDae~m~~iy~~lGls  151 (273)
T d1tf5a3          97 IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVT----VNEY------LASRDAEQMGKIFEFLGLT  151 (273)
T ss_dssp             EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEE----SSHH------HHHHHHHHHHHHHHHTTCC
T ss_pred             heeecCCCcchhHHHHHHHHHHhcCCCceEEe----cCcc------ccchhhhHHhHHHHHcCCC
Confidence            45567899999999888888888999998874    3332      33357777665   35654

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.83  E-value=0.36  Score=33.58  Aligned_cols=18  Identities=17%  Similarity=0.340  Sum_probs=14.1

Q ss_pred             EEEEeCCCCCcHHHHHHHH
Q psy14904          9 YFITGTNTNIGKTIISCAL   27 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~L   27 (233)
                      |+|.|. +||||||+...+
T Consensus         5 i~viG~-~~vGKTsLi~r~   22 (171)
T d2erxa1           5 VAVFGA-GGVGKSSLVLRF   22 (171)
T ss_dssp             EEEECC-TTSSHHHHHHHH
T ss_pred             EEEECC-CCCCHHHHHHHH
Confidence            566776 899999987655

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.79  E-value=0.35  Score=34.21  Aligned_cols=18  Identities=22%  Similarity=0.390  Sum_probs=14.1

Q ss_pred             EEEEeCCCCCcHHHHHHHH
Q psy14904          9 YFITGTNTNIGKTIISCAL   27 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~L   27 (233)
                      |+|.|. +||||||+...|
T Consensus         8 i~ivG~-~~vGKTsLi~~l   25 (186)
T d2f7sa1           8 LLALGD-SGVGKTTFLYRY   25 (186)
T ss_dssp             EEEESC-TTSSHHHHHHHH
T ss_pred             EEEECC-CCcCHHHHHHHH
Confidence            667776 999999986544

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=83.78  E-value=0.43  Score=35.84  Aligned_cols=27  Identities=15%  Similarity=0.039  Sum_probs=22.8

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKK   33 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~   33 (233)
                      -.++++.|. .|+||||+...++..+.-
T Consensus        32 Ge~~~liGp-sGaGKSTLl~~i~Gl~~p   58 (239)
T d1v43a3          32 GEFLVLLGP-SGCGKTTTLRMIAGLEEP   58 (239)
T ss_dssp             TCEEEEECC-TTSSHHHHHHHHHTSSCC
T ss_pred             CCEEEEECC-CCChHHHHHHHHHcCCCC
Confidence            457899999 999999999888887753

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=83.75  E-value=0.31  Score=36.42  Aligned_cols=34  Identities=18%  Similarity=0.048  Sum_probs=25.6

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG   40 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~   40 (233)
                      -.++++.|+ .|+||||+...|+..+.-..=+|.+
T Consensus        26 Ge~~~liGp-sGaGKSTll~~l~Gl~~p~sG~I~~   59 (229)
T d3d31a2          26 GEYFVILGP-TGAGKTLFLELIAGFHVPDSGRILL   59 (229)
T ss_dssp             TCEEEEECC-CTHHHHHHHHHHHTSSCCSEEEEEE
T ss_pred             CCEEEEECC-CCCcHHHHHHHHhcCcCCCCCEEEE
Confidence            457999999 9999999998888876433225544

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.74  E-value=0.32  Score=34.30  Aligned_cols=21  Identities=19%  Similarity=0.336  Sum_probs=15.3

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHH
Q psy14904          5 NFLHYFITGTNTNIGKTIISCAL   27 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~L   27 (233)
                      .+| |.+.|. +|||||++...+
T Consensus         2 e~K-ivllG~-~~vGKTsl~~r~   22 (195)
T d1svsa1           2 EVK-LLLLGA-GESGKSTIVKQM   22 (195)
T ss_dssp             EEE-EEEECS-TTSSHHHHHHHH
T ss_pred             ceE-EEEECC-CCCCHHHHHHHH
Confidence            345 556666 899999997654

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.74  E-value=0.38  Score=33.31  Aligned_cols=19  Identities=26%  Similarity=0.559  Sum_probs=14.8

Q ss_pred             EEEEeCCCCCcHHHHHHHHH
Q psy14904          9 YFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La   28 (233)
                      |+|.|. +|||||++...+.
T Consensus         7 ivlvG~-~~vGKTsli~~~~   25 (166)
T d1z0fa1           7 YIIIGD-MGVGKSCLLHQFT   25 (166)
T ss_dssp             EEEECS-TTSSHHHHHHHHH
T ss_pred             EEEECC-CCcCHHHHHHHHH
Confidence            667776 9999999976553

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.71  E-value=0.38  Score=33.46  Aligned_cols=19  Identities=26%  Similarity=0.424  Sum_probs=15.4

Q ss_pred             EEEEeCCCCCcHHHHHHHHH
Q psy14904          9 YFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La   28 (233)
                      |++.|. +||||||+...|.
T Consensus         8 i~vvG~-~~vGKTsLi~~l~   26 (169)
T d3raba_           8 ILIIGN-SSVGKTSFLFRYA   26 (169)
T ss_dssp             EEEECS-TTSSHHHHHHHHH
T ss_pred             EEEECC-CCcCHHHHHHHHH
Confidence            667777 8999999987664

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=83.67  E-value=0.4  Score=33.84  Aligned_cols=26  Identities=38%  Similarity=0.330  Sum_probs=19.7

Q ss_pred             CCCCCceeEEEEeCCCCCcHHHHHHHHH
Q psy14904          1 MINKNFLHYFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         1 ~~~~~~~~i~i~~~kggvGKTt~a~~La   28 (233)
                      |.-|.. .|+|.|. +++||||+.-.|.
T Consensus         1 ~~~k~i-nIaiiG~-~naGKSTL~n~L~   26 (179)
T d1wb1a4           1 MDFKNI-NLGIFGH-IDHGKTTLSKVLT   26 (179)
T ss_dssp             CCCEEE-EEEEEEC-TTSSHHHHHHHHH
T ss_pred             CCCCCE-EEEEEeC-CCCcHHHHHHHHH
Confidence            444444 5899998 9999999987664

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.55  E-value=0.39  Score=33.95  Aligned_cols=22  Identities=18%  Similarity=0.288  Sum_probs=16.5

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHH
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La   28 (233)
                      +.| |.+.|. +|||||++...+.
T Consensus         2 e~K-iv~lG~-~~vGKTsll~r~~   23 (200)
T d2bcjq2           2 ELK-LLLLGT-GESGKSTFIKQMR   23 (200)
T ss_dssp             EEE-EEEEES-TTSSHHHHHHHHH
T ss_pred             eeE-EEEECC-CCCCHHHHHHHHh
Confidence            345 566676 7999999988763

>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: DNA helicase UvsW
domain: DNA helicase UvsW
species: Bacteriophage T4 [TaxId: 10665]

Probab=83.51  E-value=0.73  Score=35.25  Aligned_cols=27  Identities=15%  Similarity=0.210  Sum_probs=21.8

Q ss_pred             CCCcHHHHHHHHHHHHHHc-CCeeeEEe
Q psy14904         16 TNIGKTIISCALLSEFKKR-GISCIGMK   42 (233)
Q Consensus        16 ggvGKTt~a~~La~~l~~~-G~~Vl~~d   42 (233)
                      +|+|||.++..++..+... +.|++++=
T Consensus       137 TGsGKT~i~~~i~~~~~~~~~~k~Liiv  164 (282)
T d1rifa_         137 TSAGRSLIQALLARYYLENYEGKILIIV  164 (282)
T ss_dssp             TTSCHHHHHHHHHHHHHHHCSSEEEEEC
T ss_pred             cccCccHHHHHHHHHhhhcccceEEEEE
Confidence            6999999999998777554 56888874

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=83.40  E-value=0.43  Score=33.14  Aligned_cols=35  Identities=14%  Similarity=0.152  Sum_probs=23.7

Q ss_pred             CCCCCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCC-eeeEEe
Q psy14904          1 MINKNFLHYFITGTNTNIGKTIISCALLSEFKKRGI-SCIGMK   42 (233)
Q Consensus         1 ~~~~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~-~Vl~~d   42 (233)
                      |+.++.| |+|.|. |++|.| +    |..++.++. ++.++|
T Consensus         3 ~~~k~~K-I~IIGa-G~VG~~-l----A~~l~~~~~~el~L~D   38 (154)
T d1pzga1           3 LVQRRKK-VAMIGS-GMIGGT-M----GYLCALRELADVVLYD   38 (154)
T ss_dssp             CCSCCCE-EEEECC-SHHHHH-H----HHHHHHHTCCEEEEEC
T ss_pred             cccCCCc-EEEECC-CHHHHH-H----HHHHHhCCCceEEEEE
Confidence            6677666 788887 999954 3    444555554 787887

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=83.40  E-value=0.43  Score=32.64  Aligned_cols=19  Identities=37%  Similarity=0.469  Sum_probs=15.1

Q ss_pred             EEEEeCCCCCcHHHHHHHHH
Q psy14904          9 YFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La   28 (233)
                      |++.|. +|+||||+.-.|.
T Consensus         4 I~lvG~-~nvGKSsLin~l~   22 (161)
T d2gj8a1           4 VVIAGR-PNAGKSSLLNALA   22 (161)
T ss_dssp             EEEEES-TTSSHHHHHHHHH
T ss_pred             EEEECC-CCCCHHHHHHHHh
Confidence            678888 9999999865554

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=83.35  E-value=0.36  Score=36.67  Aligned_cols=26  Identities=19%  Similarity=-0.019  Sum_probs=21.7

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFK   32 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~   32 (233)
                      -.+++|.|. .|+||||+...|+..+.
T Consensus        28 GEi~~iiG~-sGsGKSTLl~~i~Gl~~   53 (258)
T d1b0ua_          28 GDVISIIGS-SGSGKSTFLRCINFLEK   53 (258)
T ss_dssp             TCEEEEECC-TTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECC-CCCcHHHHHHHHHcCcc
Confidence            458999999 89999999988886553

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.32  E-value=0.42  Score=33.26  Aligned_cols=19  Identities=21%  Similarity=0.417  Sum_probs=15.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHH
Q psy14904          9 YFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La   28 (233)
                      |++.|. +||||||+...|.
T Consensus         8 i~lvG~-~~vGKTsLi~~l~   26 (171)
T d2ew1a1           8 IVLIGN-AGVGKTCLVRRFT   26 (171)
T ss_dssp             EEEEES-TTSSHHHHHHHHH
T ss_pred             EEEECC-CCcCHHHHHHHHH
Confidence            667776 8999999887654

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.18  E-value=0.42  Score=33.28  Aligned_cols=19  Identities=26%  Similarity=0.457  Sum_probs=15.7

Q ss_pred             EEEEeCCCCCcHHHHHHHHH
Q psy14904          9 YFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La   28 (233)
                      |+|.|. +||||||+...+.
T Consensus         5 i~~vG~-~~vGKSsLi~~~~   23 (175)
T d1ky3a_           5 VIILGD-SGVGKTSLMHRYV   23 (175)
T ss_dssp             EEEECC-TTSSHHHHHHHHH
T ss_pred             EEEECC-CCcCHHHHHHHHH
Confidence            778887 9999999987654

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.12  E-value=0.43  Score=33.03  Aligned_cols=21  Identities=14%  Similarity=0.520  Sum_probs=15.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La   28 (233)
                      .| |++.|. +||||||+...+.
T Consensus         4 ~K-i~lvG~-~~vGKTsLi~r~~   24 (167)
T d1kaoa_           4 YK-VVVLGS-GGVGKSALTVQFV   24 (167)
T ss_dssp             EE-EEEECC-TTSSHHHHHHHHH
T ss_pred             eE-EEEECC-CCcCHHHHHHHHH
Confidence            44 666676 8999999977653

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.10  E-value=0.5  Score=33.07  Aligned_cols=19  Identities=26%  Similarity=0.247  Sum_probs=14.4

Q ss_pred             EEEEeCCCCCcHHHHHHHHH
Q psy14904          9 YFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La   28 (233)
                      |+|.|. +|||||++...+.
T Consensus         5 ivvvG~-~~vGKTsLi~~~~   23 (177)
T d1kmqa_           5 LVIVGD-GACGKTCLLIVNS   23 (177)
T ss_dssp             EEEEES-TTSSHHHHHHHHH
T ss_pred             EEEECC-CCcCHHHHHHHHH
Confidence            566675 8999999975543

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=83.05  E-value=0.41  Score=34.35  Aligned_cols=33  Identities=6%  Similarity=-0.018  Sum_probs=28.7

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .-|++.|||..+|+|+     .+|..|+++|.+|.+++
T Consensus        22 ~gK~vlItGasgGIG~-----~ia~~la~~G~~V~~~~   54 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGM-----RSAALLAGEGAEVVLCG   54 (191)
T ss_dssp             TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEECCCHHHHH-----HHHHHHHhhccchhhcc
Confidence            3579999999999887     67889999999999876

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.01  E-value=0.42  Score=35.89  Aligned_cols=32  Identities=16%  Similarity=0.069  Sum_probs=24.1

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEFKKRGISCIG   40 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~   40 (233)
                      ++++.|+ .|+||||+...|+..+.-..=+|.+
T Consensus        26 ~~~liGp-nGaGKSTll~~i~Gl~~p~~G~I~~   57 (240)
T d2onka1          26 YCVLLGP-TGAGKSVFLELIAGIVKPDRGEVRL   57 (240)
T ss_dssp             EEEEECC-TTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred             EEEEECC-CCChHHHHHHHHHcCCCCCceEEEE
Confidence            6778888 8999999999999887543224444

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=82.96  E-value=0.31  Score=34.40  Aligned_cols=21  Identities=33%  Similarity=0.415  Sum_probs=15.5

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHH
Q psy14904          5 NFLHYFITGTNTNIGKTIISCAL   27 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~L   27 (233)
                      ..| |++.|. +||||||+...|
T Consensus        17 ~~K-I~lvG~-~~vGKTsLi~~l   37 (182)
T d1moza_          17 ELR-ILILGL-DGAGKTTILYRL   37 (182)
T ss_dssp             CEE-EEEEEE-TTSSHHHHHHHT
T ss_pred             eEE-EEEECC-CCCCHHHHHHHH
Confidence            344 667777 799999988654

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.95  E-value=0.41  Score=35.84  Aligned_cols=33  Identities=15%  Similarity=0.338  Sum_probs=29.2

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      .-|++.|||..+|.||.     +|..|+++|.+|.+.+
T Consensus         6 ~GK~~lITGas~GIG~a-----ia~~la~~G~~V~~~~   38 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRG-----TVQALHATGARVVAVS   38 (244)
T ss_dssp             TTCEEEEESTTSHHHHH-----HHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEeCCCCHHHHH-----HHHHHHHcCCEEEEEE
Confidence            45899999999999974     7899999999999986

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.94  E-value=0.42  Score=35.60  Aligned_cols=33  Identities=21%  Similarity=0.267  Sum_probs=28.7

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +-|+..|||..+|.|+.     +|..|+++|.+|.+.+
T Consensus         4 kGKvalITGas~GIG~a-----ia~~la~~G~~V~~~~   36 (248)
T d2o23a1           4 KGLVAVITGGASGLGLA-----TAERLVGQGASAVLLD   36 (248)
T ss_dssp             TTCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEe
Confidence            46899999998888875     7889999999999876

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.83  E-value=0.43  Score=35.91  Aligned_cols=32  Identities=16%  Similarity=0.227  Sum_probs=28.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      -|++.|||..+|.|+.     +|..|+++|.+|.+.+
T Consensus         3 GKvalITGas~GIG~a-----ia~~la~~Ga~V~i~~   34 (254)
T d2gdza1           3 GKVALVTGAAQGIGRA-----FAEALLLKGAKVALVD   34 (254)
T ss_dssp             TCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEE
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEE
Confidence            5799999999999985     7888999999999976

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.81  E-value=0.4  Score=35.95  Aligned_cols=32  Identities=25%  Similarity=0.186  Sum_probs=28.5

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      -|++.|||..+|.|+     .+|..|+++|.+|.+.+
T Consensus         7 Gkv~lITGas~GIG~-----~ia~~la~~G~~V~l~~   38 (244)
T d1yb1a_           7 GEIVLITGAGHGIGR-----LTAYEFAKLKSKLVLWD   38 (244)
T ss_dssp             TCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEE
Confidence            589999999999997     56788999999999976

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.79  E-value=0.46  Score=33.14  Aligned_cols=18  Identities=17%  Similarity=0.529  Sum_probs=14.4

Q ss_pred             EEEEeCCCCCcHHHHHHHH
Q psy14904          9 YFITGTNTNIGKTIISCAL   27 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~L   27 (233)
                      |++.|. +||||||+...+
T Consensus         8 I~lvG~-~~vGKTsll~~~   25 (174)
T d2bmea1           8 FLVIGN-AGTGKSCLLHQF   25 (174)
T ss_dssp             EEEEES-TTSSHHHHHHHH
T ss_pred             EEEECC-CCcCHHHHHHHH
Confidence            677777 899999987654

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=82.78  E-value=0.43  Score=33.23  Aligned_cols=19  Identities=32%  Similarity=0.441  Sum_probs=15.5

Q ss_pred             eEEEEeCCCCCcHHHHHHHH
Q psy14904          8 HYFITGTNTNIGKTIISCAL   27 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~L   27 (233)
                      .|++.|. +||||||+...|
T Consensus        18 kI~vvG~-~~vGKSsLi~~l   36 (176)
T d1fzqa_          18 RILLLGL-DNAGKTTLLKQL   36 (176)
T ss_dssp             EEEEEES-TTSSHHHHHHHH
T ss_pred             EEEEECC-CCCCHHHHHHHH
Confidence            4778888 899999998654

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.77  E-value=0.45  Score=32.95  Aligned_cols=19  Identities=21%  Similarity=0.280  Sum_probs=15.1

Q ss_pred             EEEEeCCCCCcHHHHHHHHH
Q psy14904          9 YFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La   28 (233)
                      |+|.|. +|||||++...+.
T Consensus         6 ivlvG~-~~vGKTsLi~r~~   24 (167)
T d1z08a1           6 VVLLGE-GCVGKTSLVLRYC   24 (167)
T ss_dssp             EEEECC-TTSCHHHHHHHHH
T ss_pred             EEEECC-CCcCHHHHHHHHH
Confidence            567776 8999999986654

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.67  E-value=0.45  Score=32.85  Aligned_cols=60  Identities=17%  Similarity=0.081  Sum_probs=30.7

Q ss_pred             CEEEEEcCCC-CcHHHHHHHHHHHH--hCCCcEEEEEEcccCCCch--hhhhhhHHHHHhhcCCCce
Q psy14904        148 PIILVIDLKI-GCINNALLSLEAIN--SRGLKLIGWVANHTQIVDT--LFANENYIELTKYLNVTPL  209 (233)
Q Consensus       148 ~vllV~~~~~-~~~~~~~~~~~~l~--~~~~~i~GiVlN~~~~~~~--~~~~~~~~~l~~~~~~pvl  209 (233)
                      -+++|.+... .+++.+...++.+.  ..+.+++ +|.||++ -..  ....+..+.+.+..+.+++
T Consensus        77 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ii-lVgnK~D-l~~~~~v~~~~~~~~~~~~~~~~~  141 (164)
T d1z2aa1          77 ACVLVFSTTDRESFEAISSWREKVVAEVGDIPTA-LVQNKID-LLDDSCIKNEEAEGLAKRLKLRFY  141 (164)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEE-EEEECGG-GGGGCSSCHHHHHHHHHHHTCEEE
T ss_pred             eEEEEEeccchhhhhhcccccccccccCCCceEE-EeeccCC-cccceeeeehhhHHHHHHcCCEEE
Confidence            3555555443 34444444444443  3566744 6789998 211  1122334455556677765

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.56  E-value=0.44  Score=33.25  Aligned_cols=19  Identities=32%  Similarity=0.609  Sum_probs=14.8

Q ss_pred             EEEEeCCCCCcHHHHHHHHH
Q psy14904          9 YFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La   28 (233)
                      |+|.|. +||||||+...+.
T Consensus         6 ivvvG~-~~vGKTsli~r~~   24 (173)
T d2a5ja1           6 YIIIGD-TGVGKSCLLLQFT   24 (173)
T ss_dssp             EEEESS-TTSSHHHHHHHHH
T ss_pred             EEEECC-CCcCHHHHHHHHh
Confidence            567776 8999999986553

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=82.51  E-value=0.54  Score=35.13  Aligned_cols=34  Identities=26%  Similarity=0.366  Sum_probs=29.3

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      -+-|++.|||..+|.|+.     +|..|+++|.+|.+.+
T Consensus         3 L~gK~~lITGas~GIG~a-----ia~~l~~~G~~V~~~~   36 (242)
T d1ulsa_           3 LKDKAVLITGAAHGIGRA-----TLELFAKEGARLVACD   36 (242)
T ss_dssp             TTTCEEEEESTTSHHHHH-----HHHHHHHTTCEEEEEE
T ss_pred             CCCCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEE
Confidence            345899999999999985     6789999999999986

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=82.45  E-value=0.6  Score=29.19  Aligned_cols=31  Identities=26%  Similarity=0.220  Sum_probs=23.8

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      -|.|+|.    |-|||-.+  .|.+|+++|.+|.++|
T Consensus         5 ~K~v~Vi----GlG~sG~s--~a~~L~~~g~~v~~~D   35 (93)
T d2jfga1           5 GKNVVII----GLGLTGLS--CVDFFLARGVTPRVMD   35 (93)
T ss_dssp             TCCEEEE----CCSHHHHH--HHHHHHHTTCCCEEEE
T ss_pred             CCEEEEE----eECHHHHH--HHHHHHHCCCEEEEee
Confidence            3456776    45777665  3789999999999998

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=82.40  E-value=0.2  Score=39.40  Aligned_cols=23  Identities=22%  Similarity=0.274  Sum_probs=20.1

Q ss_pred             eEEEEeCCCCCcHHHHHHHHHHHH
Q psy14904          8 HYFITGTNTNIGKTIISCALLSEF   31 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~La~~l   31 (233)
                      -+.+.|. +|+||||++-.|+..|
T Consensus        30 ~vLl~G~-pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_          30 GVLVFGD-RGTGKSTAVRALAALL   52 (333)
T ss_dssp             CEEEECC-GGGCTTHHHHHHHHHS
T ss_pred             eEEEECC-CCccHHHHHHHHHHhC
Confidence            4777888 9999999999999877

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=82.39  E-value=0.58  Score=33.43  Aligned_cols=65  Identities=22%  Similarity=0.136  Sum_probs=36.7

Q ss_pred             CCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCCCCc-HHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904        117 TDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLKIGC-INNALLSLEAINSRGLKLIGWVANHTQ  186 (233)
Q Consensus       117 ~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~~~~-~~~~~~~~~~l~~~~~~i~GiVlN~~~  186 (233)
                      +-+.+|||||+-.  +.   ....-+.....-+++|+++..+. ..++...+..++..+.+.+-+++|+++
T Consensus        78 ~~~~~iDtPGh~~--f~---~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~~~~iiv~inK~D  143 (195)
T d1kk1a3          78 RRVSFIDAPGHEA--LM---TTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIE  143 (195)
T ss_dssp             EEEEEEECSSHHH--HH---HHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGG
T ss_pred             eeEeeeccchhhh--hh---HHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhcCccceeeeeccc
Confidence            4589999997631  00   00100111123466667766553 334555666666667776667899997

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.32  E-value=0.47  Score=32.97  Aligned_cols=20  Identities=15%  Similarity=0.426  Sum_probs=15.3

Q ss_pred             EEEEeCCCCCcHHHHHHHHHH
Q psy14904          9 YFITGTNTNIGKTIISCALLS   29 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La~   29 (233)
                      |+|.|. +||||||+...|..
T Consensus         9 i~vvG~-~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           9 LVLLGE-SAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEECS-TTSSHHHHHHHHHH
T ss_pred             EEEECC-CCcCHHHHHHHHHh
Confidence            566666 89999999876643

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.30  E-value=0.49  Score=32.55  Aligned_cols=19  Identities=21%  Similarity=0.448  Sum_probs=15.1

Q ss_pred             EEEEeCCCCCcHHHHHHHHH
Q psy14904          9 YFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La   28 (233)
                      |+|.|. +|||||++...+.
T Consensus         3 v~vvG~-~~vGKTsLi~r~~   21 (164)
T d1yzqa1           3 LVFLGE-QSVGKTSLITRFM   21 (164)
T ss_dssp             EEEEES-TTSSHHHHHHHHH
T ss_pred             EEEECC-CCcCHHHHHHHHH
Confidence            566676 8999999987764

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=82.25  E-value=0.28  Score=36.98  Aligned_cols=34  Identities=15%  Similarity=-0.088  Sum_probs=25.4

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeE
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIG   40 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~   40 (233)
                      -.+++|.|. .|+||||+...|+..+.-..-+|.+
T Consensus        31 Ge~~~iiG~-sGsGKSTll~~i~gl~~p~~G~I~~   64 (242)
T d1oxxk2          31 GERFGILGP-SGAGKTTFMRIIAGLDVPSTGELYF   64 (242)
T ss_dssp             TCEEEEECS-CHHHHHHHHHHHHTSSCCSEEEEEE
T ss_pred             CCEEEEECC-CCCcHHHHHHHHHcCcCCCCceEEE
Confidence            458999999 9999999998888876433224444

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=82.17  E-value=0.39  Score=35.38  Aligned_cols=31  Identities=23%  Similarity=0.414  Sum_probs=27.4

Q ss_pred             eeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          7 LHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         7 ~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      |++.|||..+|.|+     .+|..|+++|.+|.+.+
T Consensus         2 K~alITGas~GIG~-----aiA~~la~~Ga~V~i~~   32 (241)
T d1uaya_           2 RSALVTGGASGLGR-----AAALALKARGYRVVVLD   32 (241)
T ss_dssp             CEEEEETTTSHHHH-----HHHHHHHHHTCEEEEEE
T ss_pred             CEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEE
Confidence            68899999999888     47889999999999987

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=82.16  E-value=0.23  Score=37.78  Aligned_cols=26  Identities=12%  Similarity=0.046  Sum_probs=20.7

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFK   32 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~   32 (233)
                      -..++|+|. .|+||||+...|+..+.
T Consensus        44 Ge~vaivG~-sGsGKSTLl~ll~gl~~   69 (255)
T d2hyda1          44 GETVAFVGM-SGGGKSTLINLIPRFYD   69 (255)
T ss_dssp             TCEEEEECS-TTSSHHHHHTTTTTSSC
T ss_pred             CCEEEEECC-CCCcHHHHHHHHHhcCC
Confidence            457999999 89999999876665443

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=82.03  E-value=0.31  Score=34.33  Aligned_cols=19  Identities=26%  Similarity=0.363  Sum_probs=16.0

Q ss_pred             eEEEEeCCCCCcHHHHHHHH
Q psy14904          8 HYFITGTNTNIGKTIISCAL   27 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~L   27 (233)
                      -|+|.|. +||||||+.-.|
T Consensus         3 ~VaivG~-~nvGKSTLin~L   21 (180)
T d1udxa2           3 DVGLVGY-PNAGKSSLLAAM   21 (180)
T ss_dssp             SEEEECC-GGGCHHHHHHHH
T ss_pred             EEEEECC-CCCCHHHHHHHH
Confidence            3888888 999999998665

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.91  E-value=0.52  Score=32.54  Aligned_cols=18  Identities=17%  Similarity=0.508  Sum_probs=14.7

Q ss_pred             EEEEeCCCCCcHHHHHHHH
Q psy14904          9 YFITGTNTNIGKTIISCAL   27 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~L   27 (233)
                      |+|.|. +||||||+...|
T Consensus         5 i~vvG~-~~vGKTSli~~l   22 (166)
T d1g16a_           5 ILLIGD-SGVGKSCLLVRF   22 (166)
T ss_dssp             EEEEES-TTSSHHHHHHHH
T ss_pred             EEEECC-CCcCHHHHHHHH
Confidence            667776 899999998655

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.89  E-value=0.51  Score=32.45  Aligned_cols=60  Identities=8%  Similarity=0.131  Sum_probs=31.3

Q ss_pred             CEEEEEcCCC-CcHHHHHHHHHHHH----hCCCcEEEEEEcccCCCch--hhhhhhHHHHHhhcCCCce
Q psy14904        148 PIILVIDLKI-GCINNALLSLEAIN----SRGLKLIGWVANHTQIVDT--LFANENYIELTKYLNVTPL  209 (233)
Q Consensus       148 ~vllV~~~~~-~~~~~~~~~~~~l~----~~~~~i~GiVlN~~~~~~~--~~~~~~~~~l~~~~~~pvl  209 (233)
                      .+++|.+... .+++.+......+.    ..+++ +-+|.||.+ -..  ....+..+.+.+.++.+++
T Consensus        78 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-i~lvgnK~D-l~~~~~v~~~~~~~~~~~~~~~~~  144 (165)
T d1z06a1          78 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIP-RILVGNKCD-LRSAIQVPTDLAQKFADTHSMPLF  144 (165)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCC-EEEEEECTT-CGGGCCSCHHHHHHHHHHTTCCEE
T ss_pred             ceEEEEEeehhhhhhhhhhhhHHHHhhccCCCCe-EEEEecccc-chhccchhHHHHHHHHHHCCCEEE
Confidence            3555655443 34554443444332    23555 557899998 211  1223334555566788776

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=81.86  E-value=0.65  Score=33.51  Aligned_cols=62  Identities=15%  Similarity=0.073  Sum_probs=36.0

Q ss_pred             CeEEEeccCcccC-c-cCCCCchHHHHHHhCCCEEEEEcCCCCc-HHHHHHHHHHHHhCCCcEEEEEEcccC
Q psy14904        118 DVIILEGIGGFSV-P-FHDNENSADLAEKLGLPIILVIDLKIGC-INNALLSLEAINSRGLKLIGWVANHTQ  186 (233)
Q Consensus       118 D~vlID~~~g~~~-p-~~~~~~~~~l~~~~~~~vllV~~~~~~~-~~~~~~~~~~l~~~~~~i~GiVlN~~~  186 (233)
                      .+-+|||||...- . ...++..       ..-+++|+++..+- -.++......++..+++-+=+++||++
T Consensus        87 ~~~iiD~PGH~df~~~~~~~~~~-------ad~ailvVda~~gi~~~~t~e~~~~~~~~~i~~iIV~vNK~D  151 (205)
T d2qn6a3          87 RISFIDAPGHEVLMATMLSGAAL-------MDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVD  151 (205)
T ss_dssp             EEEEEECSCHHHHHHHHHHTSSC-------CSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECGG
T ss_pred             EEEEeccchHHHHHhhhhcceec-------cccccccccccccccchhHHHHHHHHHHcCCceeeeccccCC
Confidence            4789999975310 0 0011111       23467777776552 334555666666677754556799998

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=81.69  E-value=0.33  Score=34.28  Aligned_cols=19  Identities=16%  Similarity=0.331  Sum_probs=16.1

Q ss_pred             eEEEEeCCCCCcHHHHHHHH
Q psy14904          8 HYFITGTNTNIGKTIISCAL   27 (233)
Q Consensus         8 ~i~i~~~kggvGKTt~a~~L   27 (233)
                      -|+|.|. +||||||+.-.|
T Consensus         3 ~VaiiG~-~nvGKSSLin~L   21 (185)
T d1lnza2           3 DVGLVGF-PSVGKSTLLSVV   21 (185)
T ss_dssp             CEEEESS-TTSSHHHHHHHS
T ss_pred             eEEEECC-CCCCHHHHHHHH
Confidence            4889998 999999987655

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.62  E-value=0.53  Score=32.57  Aligned_cols=21  Identities=24%  Similarity=0.420  Sum_probs=15.6

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La   28 (233)
                      .| |+|.|. +||||||+...|.
T Consensus         5 ~K-i~lvG~-~~vGKTsli~rl~   25 (167)
T d1z0ja1           5 LK-VCLLGD-TGVGKSSIMWRFV   25 (167)
T ss_dssp             EE-EEEECC-TTSSHHHHHHHHH
T ss_pred             eE-EEEECC-CCcCHHHHHHHHH
Confidence            45 566676 8999999887654

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=81.60  E-value=0.47  Score=35.65  Aligned_cols=33  Identities=15%  Similarity=0.200  Sum_probs=28.5

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +-|++.|||..+|.|+     .+|..|+++|.+|.+.+
T Consensus         4 ~gK~~lITGas~GIG~-----aia~~la~~Ga~V~i~~   36 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGF-----GIAQGLAEAGCSVVVAS   36 (251)
T ss_dssp             TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEE
Confidence            4579999999898887     56789999999999986

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.45  E-value=0.52  Score=33.20  Aligned_cols=21  Identities=19%  Similarity=0.327  Sum_probs=16.4

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La   28 (233)
                      +| |+|.|. +|||||++...+.
T Consensus         6 iK-ivviG~-~~vGKTsli~~~~   26 (183)
T d1mh1a_           6 IK-CVVVGD-GAVGKTCLLISYT   26 (183)
T ss_dssp             EE-EEEECS-TTSSHHHHHHHHH
T ss_pred             EE-EEEECC-CCCCHHHHHHHHH
Confidence            44 677776 8999999987764

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.31  E-value=0.51  Score=32.76  Aligned_cols=87  Identities=6%  Similarity=-0.018  Sum_probs=39.1

Q ss_pred             CCCeEEEeccCcccCccCCCCchHHHHHHhCCCEEEEEcCC-CCcHHHHHHHHHHHH----hCCCcEEEEEEcccCCCch
Q psy14904        116 LTDVIILEGIGGFSVPFHDNENSADLAEKLGLPIILVIDLK-IGCINNALLSLEAIN----SRGLKLIGWVANHTQIVDT  190 (233)
Q Consensus       116 ~~D~vlID~~~g~~~p~~~~~~~~~l~~~~~~~vllV~~~~-~~~~~~~~~~~~~l~----~~~~~i~GiVlN~~~~~~~  190 (233)
                      .+.+.+.|+++.-..    ...........+ .+++|.+.. ..+++++......+.    ..++++ -+|.||.+ -..
T Consensus        47 ~~~l~i~D~~g~e~~----~~~~~~~~~~~d-~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~pi-ilvgnK~D-l~~  119 (168)
T d2gjsa1          47 EASLMVYDIWEQDGG----RWLPGHCMAMGD-AYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPI-ILVGNKSD-LVR  119 (168)
T ss_dssp             EEEEEEEECC-----------CHHHHHTSCS-EEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCE-EEEEECTT-CGG
T ss_pred             ccceeeeeccccccc----ceecccchhhhh-hhceeccccccccccccccccchhhcccccccceE-EEeecccc-hhh
Confidence            466777887653210    011122222222 356666544 335555544444443    234454 36789998 221


Q ss_pred             h--hhhhhHHHHHhhcCCCce
Q psy14904        191 L--FANENYIELTKYLNVTPL  209 (233)
Q Consensus       191 ~--~~~~~~~~l~~~~~~pvl  209 (233)
                      .  ......+.+.+..+.+++
T Consensus       120 ~~~v~~~~~~~~~~~~~~~~~  140 (168)
T d2gjsa1         120 SREVSVDEGRACAVVFDCKFI  140 (168)
T ss_dssp             GCCSCHHHHHHHHHHHTSEEE
T ss_pred             hcchhHHHHHHHHHhcCCEEE
Confidence            1  112233445556677765

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=81.30  E-value=0.54  Score=35.39  Aligned_cols=33  Identities=21%  Similarity=0.327  Sum_probs=29.2

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +-|++.|||..+|.|+     .+|..|+++|.+|.+.+
T Consensus         4 ~gK~alVTGas~GIG~-----aia~~la~~Ga~V~~~~   36 (256)
T d1k2wa_           4 DGKTALITGSARGIGR-----AFAEAYVREGARVAIAD   36 (256)
T ss_dssp             TTEEEEEETCSSHHHH-----HHHHHHHHTTEEEEEEE
T ss_pred             CCCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEE
Confidence            4589999999999998     57889999999999986

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.21  E-value=0.54  Score=32.61  Aligned_cols=18  Identities=22%  Similarity=0.523  Sum_probs=14.8

Q ss_pred             EEEEeCCCCCcHHHHHHHH
Q psy14904          9 YFITGTNTNIGKTIISCAL   27 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~L   27 (233)
                      |+|.|. +|||||++...+
T Consensus         9 i~vvG~-~~vGKTsli~~~   26 (170)
T d2g6ba1           9 VMLVGD-SGVGKTCLLVRF   26 (170)
T ss_dssp             EEEECS-TTSSHHHHHHHH
T ss_pred             EEEECC-CCcCHHHHHHHH
Confidence            777887 899999987654

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.19  E-value=0.57  Score=32.35  Aligned_cols=19  Identities=21%  Similarity=0.581  Sum_probs=15.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHH
Q psy14904          9 YFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La   28 (233)
                      |++.|. +||||||+...|.
T Consensus         6 i~viG~-~~vGKTsli~~l~   24 (166)
T d1ctqa_           6 LVVVGA-GGVGKSALTIQLI   24 (166)
T ss_dssp             EEEEES-TTSSHHHHHHHHH
T ss_pred             EEEECC-CCCCHHHHHHHHH
Confidence            667775 8999999987664

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=81.00  E-value=0.51  Score=35.40  Aligned_cols=32  Identities=19%  Similarity=0.280  Sum_probs=28.2

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      -|++.|||..+|.|+.     +|..|+++|.+|.+.+
T Consensus         5 GK~alITGas~GIG~a-----ia~~la~~G~~V~~~~   36 (248)
T d2d1ya1           5 GKGVLVTGGARGIGRA-----IAQAFAREGALVALCD   36 (248)
T ss_dssp             TCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEE
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEE
Confidence            5799999999999874     6889999999999976

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=80.87  E-value=0.66  Score=35.44  Aligned_cols=32  Identities=28%  Similarity=0.397  Sum_probs=28.3

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      -|++.|||..+|.|+-     +|..|+++|.+|.+.+
T Consensus        25 gK~alITGas~GIG~a-----iA~~la~~Ga~Vii~~   56 (294)
T d1w6ua_          25 GKVAFITGGGTGLGKG-----MTTLLSSLGAQCVIAS   56 (294)
T ss_dssp             TCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEE
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHHcCCEEEEEE
Confidence            3899999999998885     7889999999999986

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.81  E-value=0.58  Score=32.95  Aligned_cols=19  Identities=26%  Similarity=0.455  Sum_probs=15.3

Q ss_pred             EEEEeCCCCCcHHHHHHHHH
Q psy14904          9 YFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La   28 (233)
                      |+|.|. +||||||+...+.
T Consensus         5 v~vvG~-~~vGKSSLi~~l~   23 (184)
T d1vg8a_           5 VIILGD-SGVGKTSLMNQYV   23 (184)
T ss_dssp             EEEECC-TTSSHHHHHHHHH
T ss_pred             EEEECC-CCcCHHHHHHHHH
Confidence            677777 8999999977653

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=80.74  E-value=1  Score=34.71  Aligned_cols=30  Identities=13%  Similarity=0.070  Sum_probs=24.2

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHHHHHHHcCC
Q psy14904          6 FLHYFITGTNTNIGKTIISCALLSEFKKRGI   36 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La~~l~~~G~   36 (233)
                      -+.+.|.+. .|+|||++...++........
T Consensus        43 GQr~~I~g~-~g~GKT~l~~~i~~~~~~~~~   72 (289)
T d1xpua3          43 GQRGLIVAP-PKAGKTMLLQNIAQSIAYNHP   72 (289)
T ss_dssp             TCEEEEEEC-SSSSHHHHHHHHHHHHHHHCT
T ss_pred             CCeeeEeCC-CCCCHHHHHHHHHHHHhhcCC
Confidence            346777887 899999999999998876543

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=80.64  E-value=0.35  Score=33.74  Aligned_cols=21  Identities=24%  Similarity=0.264  Sum_probs=17.4

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCAL   27 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~L   27 (233)
                      ...|++.|. +|+||||+.-.|
T Consensus        16 ~~~I~lvG~-~NvGKSSL~n~L   36 (188)
T d1puia_          16 GIEVAFAGR-SNAGKSSALNTL   36 (188)
T ss_dssp             SEEEEEEEC-TTSSHHHHHTTT
T ss_pred             CCEEEEECC-CCCCHHHHHHHH
Confidence            456999998 999999987555

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.51  E-value=0.6  Score=33.26  Aligned_cols=19  Identities=16%  Similarity=0.440  Sum_probs=15.4

Q ss_pred             EEEEeCCCCCcHHHHHHHHH
Q psy14904          9 YFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La   28 (233)
                      |+|.|. +||||||+...+.
T Consensus         9 ivvvG~-~~vGKTsli~~l~   27 (194)
T d2bcgy1           9 LLLIGN-SGVGKSCLLLRFS   27 (194)
T ss_dssp             EEEEES-TTSSHHHHHHHHH
T ss_pred             EEEECC-CCcCHHHHHHHHh
Confidence            677777 8999999886664

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=80.50  E-value=0.65  Score=31.95  Aligned_cols=20  Identities=20%  Similarity=0.240  Sum_probs=15.0

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCAL   27 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~L   27 (233)
                      +| |++.|. +|+||||+...|
T Consensus         3 ~k-i~i~G~-~~~GKTsLl~~l   22 (164)
T d1zd9a1           3 ME-LTLVGL-QYSGKTTFVNVI   22 (164)
T ss_dssp             EE-EEEECS-TTSSHHHHHHHH
T ss_pred             EE-EEEECC-CCCCHHHHHHHH
Confidence            44 556677 899999987655

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=80.43  E-value=0.66  Score=35.29  Aligned_cols=33  Identities=21%  Similarity=0.368  Sum_probs=28.8

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          5 NFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      +-|++.|||..+|.|+.     +|..|+++|.+|.+.+
T Consensus         4 ~gK~alITGas~GIG~a-----ia~~la~~Ga~V~i~~   36 (276)
T d1bdba_           4 KGEAVLITGGASGLGRA-----LVDRFVAEGAKVAVLD   36 (276)
T ss_dssp             TTCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEE
Confidence            45899999999998884     6789999999999986

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.43  E-value=0.61  Score=32.32  Aligned_cols=21  Identities=24%  Similarity=0.409  Sum_probs=15.3

Q ss_pred             ceeEEEEeCCCCCcHHHHHHHHH
Q psy14904          6 FLHYFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         6 ~~~i~i~~~kggvGKTt~a~~La   28 (233)
                      .| |.+.|. +|||||++...+.
T Consensus         3 iK-i~lvG~-~~vGKTsli~r~~   23 (168)
T d2atva1           3 VK-LAIFGR-AGVGKSALVVRFL   23 (168)
T ss_dssp             EE-EEEECC-TTSSHHHHHHHHH
T ss_pred             EE-EEEECC-CCCCHHHHHHHHH
Confidence            45 556665 8999999886553

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.19  E-value=0.73  Score=34.35  Aligned_cols=34  Identities=18%  Similarity=0.367  Sum_probs=28.8

Q ss_pred             CCceeEEEEeCCCCCcHHHHHHHHHHHHHHcCCeeeEEe
Q psy14904          4 KNFLHYFITGTNTNIGKTIISCALLSEFKKRGISCIGMK   42 (233)
Q Consensus         4 ~~~~~i~i~~~kggvGKTt~a~~La~~l~~~G~~Vl~~d   42 (233)
                      -+-|++.|||..+|.|+     .+|..|+++|.+|.+.+
T Consensus         3 l~GK~alITGas~GIG~-----aia~~la~~Ga~V~~~~   36 (242)
T d1cyda_           3 FSGLRALVTGAGKGIGR-----DTVKALHASGAKVVAVT   36 (242)
T ss_dssp             CTTCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred             CCCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEE
Confidence            34688999999888887     46888999999999986

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=80.15  E-value=0.44  Score=33.25  Aligned_cols=21  Identities=29%  Similarity=0.377  Sum_probs=15.9

Q ss_pred             CceeEEEEeCCCCCcHHHHHHHH
Q psy14904          5 NFLHYFITGTNTNIGKTIISCAL   27 (233)
Q Consensus         5 ~~~~i~i~~~kggvGKTt~a~~L   27 (233)
                      .+| |++.|. +||||||+...|
T Consensus        12 ~~k-IvlvG~-~~vGKTSli~rl   32 (173)
T d1e0sa_          12 EMR-ILMLGL-DAAGKTTILYKL   32 (173)
T ss_dssp             CEE-EEEEEE-TTSSHHHHHHHT
T ss_pred             eEE-EEEECC-CCCCHHHHHHHH
Confidence            455 667777 899999988654

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.10  E-value=0.64  Score=32.37  Aligned_cols=19  Identities=16%  Similarity=0.364  Sum_probs=15.7

Q ss_pred             EEEEeCCCCCcHHHHHHHHH
Q psy14904          9 YFITGTNTNIGKTIISCALL   28 (233)
Q Consensus         9 i~i~~~kggvGKTt~a~~La   28 (233)
                      |+|.|. +||||||+...+.
T Consensus         9 I~vvG~-~~vGKSSli~~~~   27 (174)
T d1wmsa_           9 VILLGD-GGVGKSSLMNRYV   27 (174)
T ss_dssp             EEEECC-TTSSHHHHHHHHH
T ss_pred             EEEECC-CCCCHHHHHHHHH
Confidence            778886 8999999986664