Psyllid ID: psy14927

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070----
Protein Sequence
MKEEETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLETIEPDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKIAEVDKYLEMKRNQSFRSSNTDIILPVEKWTLLSLARVLEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKALKIITKQIILILIIYRVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCGQLDAVESIASELNVQSDQDLILKCASYFARREHHDRAVQMYAIARRYDQALSLIQTKHVPLSEELADLLVPPESDDQRQVVLNTLGNCAAVQANYHLATKLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK
Secondary Structure (PSIPRED)
ccHHHHHHcccHHHHHHHHHHcccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHcHHHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHHcccccccHHHHHHccccHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccccccccccEEHHHHHHHHHccccccccHHHHHHHHHHcccccHHHHHHHHHHHcccEEEEEccccHHHccHHHHHHHHHHccccccccccccEEEEEEEEEEEEccccccccccccccccccccccccccHHHcccccHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEccccHHHHHHHcccccEEEEEEEccccccccccccccccccEEEEEEcccccEEEEEEEcccHHHHHHHHHHHHHHcccHHHHHHcccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccccccccEEccccccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcEEEEEEEEEEEEEEccEEEEEEEHHHHHHHHHHHHHHHccccccHHHHccccHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHccHHHHHHHHHHcccccHHHHHHcccccccccccccHHHHcccccccHHHHHHHHHHHHHccccccEEcHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEccccEEEEEEcccccEEEEccEEEEEccccccccccccccccEEEEcccccHHccHHcccccccEEEEEEcccccccccccHHHHHHHHHHHHccccEEEEccEEEEEEEcccEEEEEEEEcccccccEEEEccEEEEEccccccccccccccccccccccccEEcccccccccccEEEEcccccccccccccccHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHHccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHHHHHcHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHEEHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccEEccHHHHHHHHHHHHHccccEEEEEEEHHHcHHHHHHcccccEEEEEEEccccEEEEEEEEEccccEEEEEEEccccHHHHHccccccEEEEEEEccccEEEEEEEEEccHHHHHHHHHHHHHcccEHHHHHcccccccccEEcccccccHHHHHccHHHHHHHHHHHHHHHHHHcccccHccEEEccEEEcHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEEcccEEEEEcccccccccccccHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHccccHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHccEEEEEEccccccHHHHHHcccccHHHHHHHHHHHHHHHcccccEEcHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEcEEEEcccccEEEEcccccEEEEccccEEEcccEEEccccccccccccEEEHHHHccccHHHHHHHcccEEEEEEcccccccccccHHHHHHHHHHHHHcccEEEEcEEEEEEEEEccccEEEEEEEEcccccEEEEEcEEEEcccEEEccccccHHHHcccEcccccEccccccEcccccEEEccccccccccHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mkeeetmkngdIDRAIRMFEKAEthqqhvprmlLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYensgqfdeAIHFYSVAGSCGNAVRLCKEQALDDQLWNLAlsagpseqIEAATYLETIEPDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLksgdtnkiIFFAGVSRMKEIYVMAANYlqssdwksqPELLKSIISFYSKGKAPHLLANFYVSCAQVEIdefgnyekgLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEidefgnyekgLGALNEAKRCLLKHNDSMYETLKSSVVEKIAEVDKYLEMkrnqsfrssntdiilpvEKWTLLSLARVLEGIeykvgkfpfaansraktnndtdGFVKVLgdkltdkvlgvhiigpgieykvgkfpfaansraktnndtdGFVKVLgdkltdkvlgvhiigpaaGELINEAVLAMEYGASCEDVartchahptvcvekndtlggtclnvgcipskallnnshyyhmahsgdmkargIEVEGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKALKIITKQIILILIIYRVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYensgqfdeAIHFYSVAGSCGNAVRLCGQLDAVESIASELNVQSDQDLILKCASYFARREHHDRAVQMYAIARRYDQALSLIqtkhvplseeladllvppesddqRQVVLNTLGNCAAVQANYHLATKLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHlfksnkvtqlnghgkitgpntvtviksdgsteevKTKNILIAtgsevtpfpgievdeetivsstgalslkkgsvwgrLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGkqgmqfklgtkvtgasksgdnitvtienvkdptkkeelscdallvcvgrrpythnlgleeigiekdekgrvpvnsrfqtvipnifaigdcihgpmlahkaedegivcvegiagdk
Flexible Loop (DISEMBL)
mkeeetmkngdidRAIRMFEKaethqqhvprmLLENTDKLEKYiiqskdpvlLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLETIEPDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKIAEVDKYLEmkrnqsfrssntdiilpvEKWTLLSLARVLEGIEYKVGkfpfaansraktnndtdgFVKVLGDKLTDKVLGVHIIGPGIEYKVGKFPFAANsraktnndtdgFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKALKIITKQIILILIIYRVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCGQLDAVESIASELNVQSDQDLILKCASYFARREHHDRAVQMYAIARRYDQALSLIQTKHVPLSEELADLLVPPESDDQRQVVLNTLGNCAAVQANYHLATKLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKsnkvtqlnghgkitgpntvtviksdgsteevktkniliatgsevtpfpgiEVDEETIVSstgalslkkgsvWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTkvtgasksgdnitvtienvkdptkkeelSCDALLVCVGRRPYThnlgleeigiekdekgrvPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK
Low Complexity Region (SEG)
MKEEETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLETIEPDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKIAEVDKYLEMKRNQSFRSSNTDIILPVEKWTLLSLARVLEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGTKSAAVKALTGGIAHLFKSNkalkiitkqiililiiyrvllkWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCGQLDAVESIASELNVQSDQDLILKCASYFARREHHDRAVQMYAIARRYDQALSLIQTKHVPLSEELADLLVPPESDDQRQVVLNTLGNCAAVQANYHLATKLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK
Disordered region (IsUnstruct)
******************************RMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLETIEPDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKIAEVDKYLEMKRNQSFRSSNTDIILPVEKWTLLSLARVLEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKALKIITKQIILILIIYRVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCGQLDAVESIASELNVQSDQDLILKCASYFARREHHDRAVQMYAIARRYDQALSLIQTKHVPLSEELADLLV*******RQVVLNTLGNCAAVQANYHLATKLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKS*****EVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGA****DNITVTIENV******EELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGI****
Disordered Region (DISOPRED)
*********GDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLETIEPDKAVLLYHKAGALHKALDLAFKL************AMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRC*********************EVEIDEFGNYEKGLGALNEAKR***KHNDSMYETLKSSVVEKIAEVDKYLEMKRNQSFRSSNTDIILPVEKWTLLSLARVLEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKALKIITKQIILILIIYRVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCGQLDAVESIASELNVQSDQDLILKCASYFARREHHDRAVQMYAIARRYDQALSLIQTKHVPLSEELADLLVPPESDDQRQVVLNTLGNCAAVQANYHLATKLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGD*
Disordered Region (DISEMBL)
*********GDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLETIEPDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKIAEVDKYLEMKRNQSFRSSNTDIILPVEKWTLLSLARVLEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKALKIITKQIILILIIYRVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCGQLDAVESIASELNVQSDQDLILKCASYFARREHHDRAVQMYAIARRYDQALSLIQTKHVPLSEELADLLVPPESDDQRQVVLNTLGNCAAVQANYHLATKLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK
Disordered Region (DISPRO)
MK**ETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLETIEPDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKIAEVDKYLEMKRNQSFRSSNTDIILPVEKWTLLSLARVLEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKALKIITKQIILILIIYRVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCGQLDAVESIASELNVQSDQDLILKCASYFARREHHDRAVQMYAIARRYDQALSLIQTKHVPLSEELADLLVPPESDDQRQVVLNTLGNCAAVQANYHLATKLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKEEETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLETIEPDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKIAEVDKYLEMKRNQSFRSSNTDIILPVEKWTLLSLARVLEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKALKIITKQIILILIIYRVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCGQLDAVESIASELNVQSDQDLILKCASYFARREHHDRAVQMYAIARRYDQALSLIQTKHVPLSEELADLLVPPESDDQRQVVLNTLGNCAAVQANYHLATKLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1074	2.2.26 [Sep-21-2011]
P49819	509	Dihydrolipoyl dehydrogena	yes	N/A	0.243	0.512	0.643	1e-94
P09623	509	Dihydrolipoyl dehydrogena	yes	N/A	0.243	0.512	0.643	2e-94
Q6P6R2	509	Dihydrolipoyl dehydrogena	yes	N/A	0.243	0.512	0.643	5e-94
P09622	509	Dihydrolipoyl dehydrogena	yes	N/A	0.243	0.512	0.636	1e-93
Q60HG3	509	Dihydrolipoyl dehydrogena	N/A	N/A	0.243	0.512	0.639	2e-93
Q5R4B1	509	Dihydrolipoyl dehydrogena	yes	N/A	0.243	0.512	0.636	2e-93
O08749	509	Dihydrolipoyl dehydrogena	yes	N/A	0.243	0.512	0.632	2e-93
Q8CIZ7	509	Dihydrolipoyl dehydrogena	yes	N/A	0.243	0.512	0.632	3e-93
Q811C4	479	Dihydrolipoyl dehydrogena	N/A	N/A	0.243	0.544	0.632	2e-92
O17953	495	Dihydrolipoyl dehydrogena	yes	N/A	0.242	0.525	0.602	2e-86

>sp|P49819|DLDH_CANFA Dihydrolipoyl dehydrogenase, mitochondrial OS=Canis familiaris GN=DLD PE=1 SV=1

 Score =  348 bits (894), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 182/283 (64%), Positives = 214/283 (75%), Gaps = 22/283 (7%)

Query: 811  YHLA-TKLFTQAGDK--GVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKIT 867
            YH+A  K F   G +   V+LNLE MM  KS AVKALTGGIAHLFK NKV  +NG+GKIT
Sbjct: 98   YHMAHGKDFASRGIEMSEVRLNLEKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKIT 157

Query: 868  GPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK------ 921
            G N VT  K+DGST+ + TKNILIATGSEVTPFPGI +DE+TIVSSTGALSLKK      
Sbjct: 158  GKNQVTAKKADGSTQVIDTKNILIATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKMV 217

Query: 922  -----------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTK 970
                       GSVW RLGA+VTA+EF+  +GG+GID E++K FQRIL KQG +FKL TK
Sbjct: 218  VIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTK 277

Query: 971  VTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGR 1029
            VTGA+K  D  I V+IE      K E ++CD LLVC+GRRP+T NLGLEE+GIE D +GR
Sbjct: 278  VTGATKKSDGKIDVSIEGASG-GKAEVITCDVLLVCIGRRPFTQNLGLEELGIELDPRGR 336

Query: 1030 VPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072
            +PVN+RFQT IPNI+AIGD + GPMLAHKAEDEGI+CVEG+AG
Sbjct: 337  IPVNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAG 379

Lipoamide dehydrogenase is a component of the glycine cleavage system as well as of the alpha-ketoacid dehydrogenase complexes. Involved in the hyperactivation of spermatazoa during capacitation and in the spermatazoal acrosome reaction.
Canis familiaris (taxid: 9615)
EC: 1EC: .EC: 8EC: .EC: 1EC: .EC: 4

>sp|P09623|DLDH_PIG Dihydrolipoyl dehydrogenase, mitochondrial OS=Sus scrofa GN=DLD PE=1 SV=1

 Score =  348 bits (892), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 182/283 (64%), Positives = 214/283 (75%), Gaps = 22/283 (7%)

Query: 811  YHLA-TKLFTQAGDK--GVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKIT 867
            YH+A  K F   G +   V+LNLE MM  KS AVKALTGGIAHLFK NKV ++NG+GKIT
Sbjct: 98   YHMAHGKDFASRGIEMSEVRLNLEKMMEQKSNAVKALTGGIAHLFKQNKVVRVNGYGKIT 157

Query: 868  GPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK------ 921
            G N VT  K+DGSTE + TKNILIATGSEVTPFPGI +DE+T+VSSTGALSLKK      
Sbjct: 158  GKNQVTATKADGSTEVINTKNILIATGSEVTPFPGITIDEDTVVSSTGALSLKKVPEKMV 217

Query: 922  -----------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTK 970
                       GSVW RLGA+VTA+E +  +GG+GID EV+K FQRIL KQG +FKL TK
Sbjct: 218  VIGAGVIGVELGSVWQRLGADVTAVELLGHVGGIGIDMEVSKNFQRILQKQGFKFKLNTK 277

Query: 971  VTGASKSGD-NITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGR 1029
            V GA+K  D NI V+IE      K E ++CD LLVC+GRRP+T NLGLEE+GIE D +GR
Sbjct: 278  VIGATKKSDGNIDVSIEAASG-GKAEVITCDVLLVCIGRRPFTQNLGLEELGIELDPRGR 336

Query: 1030 VPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072
            +PVN+RFQT IPNI+AIGD + GPMLAHKAEDEGI+CVEG+AG
Sbjct: 337  IPVNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAG 379

Lipoamide dehydrogenase is a component of the glycine cleavage system as well as of the alpha-ketoacid dehydrogenase complexes. Involved in the hyperactivation of spermatazoa during capacitation and in the spermatazoal acrosome reaction.

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 4

>sp|Q6P6R2|DLDH_RAT Dihydrolipoyl dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Dld PE=1 SV=1

 Score =  346 bits (888), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 182/283 (64%), Positives = 212/283 (74%), Gaps = 22/283 (7%)

Query: 811  YHLA-TKLFTQAGDK--GVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKIT 867
            YHLA  K F   G +   V+LNLE MM  K +AVKALTGGIAHLFK NKV  +NG GKIT
Sbjct: 98   YHLAHGKDFASRGIEIPEVRLNLEKMMEQKRSAVKALTGGIAHLFKQNKVVHVNGFGKIT 157

Query: 868  GPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK------ 921
            G N VT   +DGST+ + TKNILIATGSEVTPFPGI +DE+TIVSSTGALSLKK      
Sbjct: 158  GKNQVTATTADGSTQVIGTKNILIATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKLV 217

Query: 922  -----------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTK 970
                       GSVW RLGA+VTA+EF+  +GG+GID E++K FQRIL KQG +FKL TK
Sbjct: 218  VIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGIGIDMEISKNFQRILQKQGFKFKLNTK 277

Query: 971  VTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGR 1029
            VTGA+K  D  I V++E      K E ++CD LLVC+GRRP+T NLGLEE+GIE D KGR
Sbjct: 278  VTGATKKSDGKIDVSVEAASG-GKAEVITCDVLLVCIGRRPFTQNLGLEELGIELDPKGR 336

Query: 1030 VPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072
            +PVN+RFQT IPNIFAIGD + GPMLAHKAEDEGI+CVEG+AG
Sbjct: 337  IPVNTRFQTKIPNIFAIGDVVAGPMLAHKAEDEGIICVEGMAG 379

Lipoamide dehydrogenase is a component of the glycine cleavage system as well as of the alpha-ketoacid dehydrogenase complexes. Involved in the hyperactivation of spermatazoa during capacitation and in the spermatazoal acrosome reaction.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 4

>sp|P09622|DLDH_HUMAN Dihydrolipoyl dehydrogenase, mitochondrial OS=Homo sapiens GN=DLD PE=1 SV=2

 Score =  345 bits (885), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 180/283 (63%), Positives = 213/283 (75%), Gaps = 22/283 (7%)

Query: 811  YHLA-TKLFTQAGDK--GVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKIT 867
            YH+A  K F   G +   V+LNL+ MM  KS AVKALTGGIAHLFK NKV  +NG+GKIT
Sbjct: 98   YHMAHGKDFASRGIEMSEVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKIT 157

Query: 868  GPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK------ 921
            G N VT  K+DG T+ + TKNILIATGSEVTPFPGI +DE+TIVSSTGALSLKK      
Sbjct: 158  GKNQVTATKADGGTQVIDTKNILIATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKMV 217

Query: 922  -----------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTK 970
                       GSVW RLGA+VTA+EF+  +GG+GID E++K FQRIL KQG +FKL TK
Sbjct: 218  VIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTK 277

Query: 971  VTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGR 1029
            VTGA+K  D  I V+IE      K E ++CD LLVC+GRRP+T NLGLEE+GIE D +GR
Sbjct: 278  VTGATKKSDGKIDVSIEAASG-GKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGR 336

Query: 1030 VPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072
            +PVN+RFQT IPNI+AIGD + GPMLAHKAEDEGI+CVEG+AG
Sbjct: 337  IPVNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAG 379

Lipoamide dehydrogenase is a component of the glycine cleavage system as well as of the alpha-ketoacid dehydrogenase complexes. Involved in the hyperactivation of spermatazoa during capacitation and in the spermatazoal acrosome reaction.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 4

>sp|Q60HG3|DLDH_MACFA Dihydrolipoyl dehydrogenase, mitochondrial OS=Macaca fascicularis GN=DLD PE=2 SV=1

 Score =  344 bits (883), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 181/283 (63%), Positives = 212/283 (74%), Gaps = 22/283 (7%)

Query: 811  YHLA-TKLFTQAGDK--GVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKIT 867
            YH+A  K F   G +   V+LNL+ MM  KS AVKALTGGIAHLFK NKV  +NG+GKIT
Sbjct: 98   YHMAHGKDFASRGIEMSEVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVIHVNGYGKIT 157

Query: 868  GPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK------ 921
            G N VT  K DG T+ V TKNILIATGSEVTPFPGI +DE+TIVSSTGALSLKK      
Sbjct: 158  GKNQVTATKVDGGTQVVDTKNILIATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKMV 217

Query: 922  -----------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTK 970
                       GSVW RLGA+VTA+EF+  +GG+GID E++K FQRIL KQG +FKL TK
Sbjct: 218  VIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGIGIDMEISKNFQRILQKQGFKFKLNTK 277

Query: 971  VTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGR 1029
            VTGA+K  D  I V+IE      K E ++CD LLVC+GRRP+T NLGLEE+GIE D +GR
Sbjct: 278  VTGATKKSDGKIDVSIEAASG-GKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGR 336

Query: 1030 VPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072
            +PVN+RFQT IPNI+AIGD + GPMLAHKAEDEGI+CVEG+AG
Sbjct: 337  IPVNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAG 379

Lipoamide dehydrogenase is a component of the glycine cleavage system as well as of the alpha-ketoacid dehydrogenase complexes. Involved in the hyperactivation of spermatazoa during capacitation and in the spermatazoal acrosome reaction.

Macaca fascicularis (taxid: 9541)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 4

>sp|Q5R4B1|DLDH_PONAB Dihydrolipoyl dehydrogenase, mitochondrial OS=Pongo abelii GN=DLD PE=2 SV=1

 Score =  344 bits (883), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 180/283 (63%), Positives = 213/283 (75%), Gaps = 22/283 (7%)

Query: 811  YHLA-TKLFTQAGDK--GVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKIT 867
            YH+A  K F   G +   V+LNL+ MM  KS AVKALTGGIAHLFK NKV  +NG+GKIT
Sbjct: 98   YHMAHGKDFASRGIEMSEVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKIT 157

Query: 868  GPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK------ 921
            G N VT  K+DG T+ + TKNILIATGSEVTPFPGI +DE+TIVSSTGALSLKK      
Sbjct: 158  GKNQVTATKADGGTQVIDTKNILIATGSEVTPFPGIMIDEDTIVSSTGALSLKKVPEKMV 217

Query: 922  -----------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTK 970
                       GSVW RLGA+VTA+EF+  +GG+GID E++K FQRIL KQG +FKL TK
Sbjct: 218  VIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTK 277

Query: 971  VTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGR 1029
            VTGA+K  D  I V+IE      K E ++CD LLVC+GRRP+T NLGLEE+GIE D +GR
Sbjct: 278  VTGATKKSDGKIDVSIEAASG-GKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGR 336

Query: 1030 VPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072
            +PVN+RFQT IPNI+AIGD + GPMLAHKAEDEGI+CVEG+AG
Sbjct: 337  IPVNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAG 379

Lipoamide dehydrogenase is a component of the glycine cleavage system as well as of the alpha-ketoacid dehydrogenase complexes. Involved in the hyperactivation of spermatazoa during capacitation and in the spermatazoal acrosome reaction.

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 4

>sp|O08749|DLDH_MOUSE Dihydrolipoyl dehydrogenase, mitochondrial OS=Mus musculus GN=Dld PE=1 SV=2

 Score =  344 bits (883), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 179/283 (63%), Positives = 213/283 (75%), Gaps = 22/283 (7%)

Query: 811  YHLA-TKLFTQAGDK--GVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKIT 867
            YH+A  K F   G +   V+LNLE MM  K +AVKALTGGIAHLFK NKV  +NG GKIT
Sbjct: 98   YHMAHGKDFASRGIEIPEVRLNLEKMMEQKHSAVKALTGGIAHLFKQNKVVHVNGFGKIT 157

Query: 868  GPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK------ 921
            G N VT  K+DGST+ + TKNIL+ATGSEVTPFPGI +DE+TIVSSTGALSLKK      
Sbjct: 158  GKNQVTATKADGSTQVIDTKNILVATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKLV 217

Query: 922  -----------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTK 970
                       GSVW RLGA+VTA+EF+  +GG+GID E++K FQRIL +QG +FKL TK
Sbjct: 218  VIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGIGIDMEISKNFQRILQRQGFKFKLNTK 277

Query: 971  VTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGR 1029
            VTGA+K  D  I V++E      K E ++CD LLVC+GRRP+T NLGLEE+GIE D KGR
Sbjct: 278  VTGATKKSDGKIDVSVEAASG-GKAEVITCDVLLVCIGRRPFTQNLGLEELGIELDPKGR 336

Query: 1030 VPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072
            +PVN+RFQT IPNI+AIGD + GPMLAHKAEDEGI+CVEG+AG
Sbjct: 337  IPVNNRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAG 379

Lipoamide dehydrogenase is a component of the glycine cleavage system as well as of the alpha-ketoacid dehydrogenase complexes. Involved in the hyperactivation of spermatazoa during capacitation and in the spermatazoal acrosome reaction.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 4

>sp|Q8CIZ7|DLDH_CRIGR Dihydrolipoyl dehydrogenase, mitochondrial OS=Cricetulus griseus GN=DLD PE=2 SV=1

 Score =  343 bits (881), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 179/283 (63%), Positives = 213/283 (75%), Gaps = 22/283 (7%)

Query: 811  YHLA-TKLFTQAGDK--GVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKIT 867
            YHLA  + F   G +   V+LNLE MM  KS+AVKAL GGIAHLFK NKV  +NG GKIT
Sbjct: 98   YHLAHGRDFASRGIELSEVRLNLEKMMEQKSSAVKALIGGIAHLFKQNKVVHVNGFGKIT 157

Query: 868  GPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK------ 921
            G N VT  K+DGS++ + TKNILIATGSEVTPFPGI +DE+TIVSSTGALSLKK      
Sbjct: 158  GKNQVTATKADGSSQVIGTKNILIATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKLV 217

Query: 922  -----------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTK 970
                       GSVW RLGA+VTA+EF+  +GG+GID E++K FQRIL KQG +FKL TK
Sbjct: 218  VIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGIGIDMEISKNFQRILQKQGFKFKLNTK 277

Query: 971  VTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGR 1029
            VTGA+K  D  I V++E      K E ++CD LLVC+GRRP+T NLGLEE+GIE D +GR
Sbjct: 278  VTGATKRSDGKIDVSVEAASG-GKAEVITCDVLLVCIGRRPFTQNLGLEELGIELDPRGR 336

Query: 1030 VPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072
            +PVN+RFQT IPNI+AIGD + GPMLAHKAEDEGI+CVEG+AG
Sbjct: 337  IPVNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAG 379

Lipoamide dehydrogenase is a component of the glycine cleavage system as well as of the alpha-ketoacid dehydrogenase complexes. Involved in the hyperactivation of spermatazoa during capacitation and in the spermatazoal acrosome reaction.

Cricetulus griseus (taxid: 10029)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 4

>sp|Q811C4|DLDH_MESAU Dihydrolipoyl dehydrogenase, mitochondrial (Fragment) OS=Mesocricetus auratus GN=DLD PE=1 SV=1

 Score =  341 bits (875), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 179/283 (63%), Positives = 211/283 (74%), Gaps = 22/283 (7%)

Query: 811  YHLA-TKLFTQAGDK--GVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKIT 867
            YHLA  K F   G +   V+LNLE MM  KS+AVKALTGGIAHLFK NKV  +NG G IT
Sbjct: 82   YHLAHGKDFASRGIELSEVRLNLEKMMEQKSSAVKALTGGIAHLFKQNKVVHVNGFGNIT 141

Query: 868  GPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK------ 921
            G N VT  K+DGS++ + TKNILIATGSEVTPFPGI +DE+TIVSSTGALSLKK      
Sbjct: 142  GKNQVTATKADGSSQVIGTKNILIATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKLV 201

Query: 922  -----------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTK 970
                       GSVW RLGAEVTA+EF+  +GG+GID E++K+FQRIL KQG +FKL  K
Sbjct: 202  VIGAGVIGVELGSVWQRLGAEVTAVEFLGHVGGIGIDMEISKKFQRILQKQGFKFKLNPK 261

Query: 971  VTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGR 1029
            V GA+K  D  I V++E      K E + CD LLVC+GRRP+T NLGLEE+GIE D +GR
Sbjct: 262  VPGATKRSDGKIDVSVEAAPG-GKAEVIPCDVLLVCIGRRPFTQNLGLEELGIELDPRGR 320

Query: 1030 VPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072
            +PVN+RFQT IPNI+AIGD + GPMLAHKAEDEGI+CVEG+AG
Sbjct: 321  IPVNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAG 363

Lipoamide dehydrogenase is a component of the glycine cleavage system as well as of the alpha-ketoacid dehydrogenase complexes. Involved in the hyperactivation of spermatazoa during capacitation and in the spermatazoal acrosome reaction.

Mesocricetus auratus (taxid: 10036)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 4

>sp|O17953|DLDH_CAEEL Dihydrolipoyl dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=dld-1 PE=2 SV=2

 Score =  321 bits (822), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 168/279 (60%), Positives = 194/279 (69%), Gaps = 19/279 (6%)

Query: 812  HLATKLFTQAG-DKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPN 870
            H+A   F   G D    LNL  MM  KS +VK LTGGI  LFK+NKV  + G   I GPN
Sbjct: 87   HMAQHDFAARGIDCTASLNLPKMMEAKSNSVKQLTGGIKQLFKANKVGHVEGFATIVGPN 146

Query: 871  TVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK--------- 921
            TV   K+DGS E +  +NILIA+GSEVTPFPGI +DE+ IVSSTGALSL +         
Sbjct: 147  TVQAKKNDGSVETINARNILIASGSEVTPFPGITIDEKQIVSSTGALSLGQVPKKMVVIG 206

Query: 922  --------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTG 973
                    GSVW RLGAEVTA+EF+  +GGMGIDGEV+K FQR L KQG +F L TKV G
Sbjct: 207  AGVIGLELGSVWQRLGAEVTAVEFLGHVGGMGIDGEVSKNFQRSLTKQGFKFLLNTKVMG 266

Query: 974  ASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVN 1033
            AS++G  ITV +E  KD  KK+ L CD LLV VGRRPYT  LGL  + I+ D +GRVPVN
Sbjct: 267  ASQNGSTITVEVEGAKD-GKKQTLECDTLLVSVGRRPYTEGLGLSNVQIDLDNRGRVPVN 325

Query: 1034 SRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072
             RFQT +P+IFAIGD I GPMLAHKAEDEGI+CVEGIAG
Sbjct: 326  ERFQTKVPSIFAIGDVIEGPMLAHKAEDEGILCVEGIAG 364

Caenorhabditis elegans (taxid: 6239)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1074
242014046	508	Dihydrolipoyl dehydrogenase, putative [P	0.242	0.511	0.729	1e-111
328705771	511	PREDICTED: dihydrolipoyl dehydrogenase,	0.229	0.483	0.731	1e-104
399108166	500	dihydrolipoamide dehydrogenase E3 subuni	0.239	0.514	0.672	1e-104
391325117	499	PREDICTED: dihydrolipoyl dehydrogenase,	0.243	0.523	0.675	1e-104
399108172	471	dihydrolipoamide dehydrogenase E3 subuni	0.239	0.545	0.672	1e-104
442762163	543	Putative dihydrolipoamide dehydrogenase,	0.243	0.482	0.680	1e-103
399108170	474	dihydrolipoamide dehydrogenase E3 subuni	0.239	0.542	0.672	1e-103
399108168	503	dihydrolipoamide dehydrogenase E3 subuni	0.239	0.510	0.668	1e-103
399108156	507	dihydrolipoamide dehydrogenase E3 subuni	0.229	0.487	0.708	1e-103
399108150	507	dihydrolipoamide dehydrogenase E3 subuni	0.229	0.487	0.708	1e-102

>gi|242014046|ref|XP_002427709.1| Dihydrolipoyl dehydrogenase, putative [Pediculus humanus corporis] gi|212512144|gb|EEB14971.1| Dihydrolipoyl dehydrogenase, putative [Pediculus humanus corporis]

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/285 (72%), Positives = 232/285 (81%), Gaps = 25/285 (8%)

Query: 811  YHLATKLFTQAGDKGV------KLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHG 864
            YH+A     + G +GV       LNL+ +MGTKS AVKALTGGI  LFK+NKV+ + GH 
Sbjct: 95   YHMAHS--GELGKRGVVINGDVSLNLDVLMGTKSDAVKALTGGIKMLFKNNKVSHIQGHA 152

Query: 865  KITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK--- 921
            KITG N VT +K DGS E VKTKNILIATGSEVTPFPGIE+DEETIVSSTGALSLK+   
Sbjct: 153  KITGANEVTALKKDGSQEVVKTKNILIATGSEVTPFPGIEIDEETIVSSTGALSLKQVPQ 212

Query: 922  --------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKL 967
                          GSVW RLGAEVTA+EF+N+IGG+GIDGEVAK FQ+IL KQG++FKL
Sbjct: 213  KLVVIGAGVIGLELGSVWSRLGAEVTAVEFLNSIGGVGIDGEVAKSFQKILTKQGLKFKL 272

Query: 968  GTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEK 1027
            GTKVTGA+KSG  ITV++ENVKD +KKEEL CD LLVCVGRRPYT NLGLEE+GIEKDEK
Sbjct: 273  GTKVTGATKSGSGITVSVENVKDSSKKEELDCDVLLVCVGRRPYTVNLGLEEMGIEKDEK 332

Query: 1028 GRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072
            GR+PVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG
Sbjct: 333  GRIPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 377

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328705771|ref|XP_001948247.2| PREDICTED: dihydrolipoyl dehydrogenase, mitochondrial-like [Acyrthosiphon pisum]

 Score =  387 bits (995), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/264 (73%), Positives = 213/264 (80%), Gaps = 17/264 (6%)

Query: 826  VKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVK 885
            VKLNLE +M TK+ AV ALTGGIAHLFKSNK+T   GHGKI  PNTV+V+K DGS+E++K
Sbjct: 117  VKLNLEVLMQTKTNAVTALTGGIAHLFKSNKITLAKGHGKIKDPNTVSVLKEDGSSEDIK 176

Query: 886  TKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK-----------------GSVWGRL 928
            TKNILIATGSEVTPFPGI++DEET+VSSTGAL L K                 GSVW RL
Sbjct: 177  TKNILIATGSEVTPFPGIDIDEETVVSSTGALKLSKVPEKMIVIGAGVIGLELGSVWSRL 236

Query: 929  GAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENV 988
            GA+VTA+EFM  IGG+GIDGEV+KQFQ+IL KQG+ FKLGTKV  ASKSG  I V +EN 
Sbjct: 237  GAKVTAVEFMPTIGGVGIDGEVSKQFQKILTKQGLGFKLGTKVISASKSGGQILVEVENA 296

Query: 989  KDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGD 1048
            KD +KKE L CD LLV VGRRPYT NLGLEE  IEKD KGR+PVNSRFQTVIPNIFAIGD
Sbjct: 297  KDSSKKETLDCDVLLVSVGRRPYTQNLGLEENSIEKDAKGRIPVNSRFQTVIPNIFAIGD 356

Query: 1049 CIHGPMLAHKAEDEGIVCVEGIAG 1072
            CIHGPMLAHKAEDEGIVCVEGI G
Sbjct: 357  CIHGPMLAHKAEDEGIVCVEGITG 380

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|399108166|gb|AFP20530.1| dihydrolipoamide dehydrogenase E3 subunit, partial [Tribolium castaneum]

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/287 (67%), Positives = 225/287 (78%), Gaps = 30/287 (10%)

Query: 811  YHLATKLFTQAGDKG--------VKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG 862
            YH+A      +GD G        V+L+L+ +MG K  AVKALTGGIA LFK NKVT +NG
Sbjct: 92   YHMA-----HSGDLGARGISVDNVRLDLDKLMGQKENAVKALTGGIAQLFKKNKVTLING 146

Query: 863  HGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK- 921
            HGKITG N VT +K DGS+E V TKN+LIATGSEVTPFPGIE+DEE IVSSTGALSLK+ 
Sbjct: 147  HGKITGVNQVTALKPDGSSEVVNTKNVLIATGSEVTPFPGIEIDEEQIVSSTGALSLKEV 206

Query: 922  ----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQF 965
                            GSVW RLG+EVTA+EF+++IGG+GIDGEVAK  Q++L KQG++F
Sbjct: 207  PKRLIVIGAGVIGLELGSVWSRLGSEVTAVEFLSSIGGVGIDGEVAKTLQKVLTKQGLKF 266

Query: 966  KLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKD 1025
            KLGTKVT A KSG  + V+IE+ K+P KKEEL C+ LLVCVGRRPYTHNLGLEE+GIE+D
Sbjct: 267  KLGTKVTAAQKSGGVVKVSIEDAKNPDKKEELECEVLLVCVGRRPYTHNLGLEEMGIERD 326

Query: 1026 EKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072
            +KGR+PVNS FQTVIPNI AIGDCIHGPMLAHKAEDEGI+CVEGI G
Sbjct: 327  QKGRIPVNSHFQTVIPNIHAIGDCIHGPMLAHKAEDEGIICVEGITG 373

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|391325117|ref|XP_003737086.1| PREDICTED: dihydrolipoyl dehydrogenase, mitochondrial-like [Metaseiulus occidentalis]

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 189/280 (67%), Positives = 223/280 (79%), Gaps = 19/280 (6%)

Query: 811  YHLATKLFTQAGDK--GVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITG 868
            YH A   F   G +   V+LNL+T+M  K+ AV ALTGGIAHLFK NKV++ +GHGKITG
Sbjct: 88   YHEAIHSFASRGIECDNVRLNLDTLMDQKTKAVSALTGGIAHLFKQNKVSRFDGHGKITG 147

Query: 869  PNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK------- 921
            PN V+V KSDGS + +KTKNILIATGSEVTPFPGIE+DE+TIVSSTGALSLKK       
Sbjct: 148  PNEVSVHKSDGSVDTIKTKNILIATGSEVTPFPGIEIDEDTIVSSTGALSLKKVPEKLVV 207

Query: 922  ----------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKV 971
                      GSVW RLG+ VTA+E++ +IGGMGIDGE++K FQRILGKQGM+FKL TKV
Sbjct: 208  IGAGVIGLELGSVWCRLGSHVTAVEYLGSIGGMGIDGEISKNFQRILGKQGMKFKLDTKV 267

Query: 972  TGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVP 1031
             GA+KSGD ITV +++ KDP+K EE+ CDALLVCVGRRPYT NLGLEE+GI+KD +GR+ 
Sbjct: 268  MGATKSGDTITVQLQSAKDPSKNEEIQCDALLVCVGRRPYTENLGLEELGIKKDNRGRIE 327

Query: 1032 VNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIA 1071
            VN  FQT +PNI+AIGDCI GPMLAHKAEDEGI+CVE IA
Sbjct: 328  VNKLFQTNVPNIYAIGDCIPGPMLAHKAEDEGIICVEQIA 367

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|399108172|gb|AFP20533.1| dihydrolipoamide dehydrogenase E3 subunit, partial [Tribolium castaneum]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/287 (67%), Positives = 225/287 (78%), Gaps = 30/287 (10%)

Query: 811  YHLATKLFTQAGDKG--------VKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG 862
            YH+A      +GD G        V+L+L+ +MG K  AVKALTGGIA LFK NKVT +NG
Sbjct: 78   YHMA-----HSGDLGARGISVDNVRLDLDKLMGQKENAVKALTGGIAQLFKKNKVTLING 132

Query: 863  HGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK- 921
            HGKITG N VT +K DGS+E V TKN+LIATGSEVTPFPGIE+DEE IVSSTGALSLK+ 
Sbjct: 133  HGKITGVNQVTALKPDGSSEVVNTKNVLIATGSEVTPFPGIEIDEEQIVSSTGALSLKEV 192

Query: 922  ----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQF 965
                            GSVW RLG+EVTA+EF+++IGG+GIDGEVAK  Q++L KQG++F
Sbjct: 193  PKRLIVIGAGVIGLELGSVWSRLGSEVTAVEFLSSIGGVGIDGEVAKTLQKVLTKQGLKF 252

Query: 966  KLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKD 1025
            KLGTKVT A KSG  + V+IE+ K+P KKEEL C+ LLVCVGRRPYTHNLGLEE+GIE+D
Sbjct: 253  KLGTKVTAAQKSGGVVKVSIEDAKNPDKKEELECEVLLVCVGRRPYTHNLGLEEMGIERD 312

Query: 1026 EKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072
            +KGR+PVNS FQTVIPNI AIGDCIHGPMLAHKAEDEGI+CVEGI G
Sbjct: 313  QKGRIPVNSHFQTVIPNIHAIGDCIHGPMLAHKAEDEGIICVEGITG 359

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442762163|gb|JAA73240.1| Putative dihydrolipoamide dehydrogenase, partial [Ixodes ricinus]

 Score =  384 bits (987), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 192/282 (68%), Positives = 227/282 (80%), Gaps = 20/282 (7%)

Query: 811  YHLA-TKLFTQAGDK--GVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKIT 867
            YH+A +  F   G +   V+LNL+ +M  KSA+VKALTGGIAHLFK NKVT + GHGKIT
Sbjct: 132  YHMAHSSDFKNRGIEVDNVRLNLDQLMNQKSASVKALTGGIAHLFKQNKVTHIQGHGKIT 191

Query: 868  GPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK------ 921
            G N VT +K DG++E VKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLK+      
Sbjct: 192  GKNEVTALKRDGTSEVVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKRVPQKMI 251

Query: 922  -----------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTK 970
                       GSVW RLGA+VTA+EF+  +GGMGID E++K FQRIL KQG++FKL TK
Sbjct: 252  VIGAGVIGLELGSVWSRLGAQVTAVEFLGHVGGMGIDMEISKNFQRILTKQGLKFKLATK 311

Query: 971  VTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRV 1030
            VTGA++SG +ITV++E+VKD +KKE+L CD LLVCVGRRPYT NLGLEE+ I+KDE+GR+
Sbjct: 312  VTGATRSGGSITVSLEDVKDSSKKEQLDCDVLLVCVGRRPYTENLGLEEMAIKKDERGRI 371

Query: 1031 PVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072
             VNSRFQT +PNI+AIGDC+ GPMLAHKAEDEGIVCVEGI G
Sbjct: 372  VVNSRFQTGVPNIYAIGDCVPGPMLAHKAEDEGIVCVEGIVG 413

Source: Ixodes ricinus

Species: Ixodes ricinus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|399108170|gb|AFP20532.1| dihydrolipoamide dehydrogenase E3 subunit, partial [Tribolium castaneum]

 Score =  384 bits (987), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/287 (67%), Positives = 225/287 (78%), Gaps = 30/287 (10%)

Query: 811  YHLATKLFTQAGDKG--------VKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG 862
            YH+A      +GD G        V+L+L+ +MG K  AVKALTGGIA LFK NKVT +NG
Sbjct: 79   YHMA-----HSGDLGARGISVDNVRLDLDKLMGQKENAVKALTGGIAQLFKKNKVTLING 133

Query: 863  HGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK- 921
            HGKITG N VT +K DGS+E V TKN+LIATGSEVTPFPGIE+DEE IVSSTGALSLK+ 
Sbjct: 134  HGKITGVNQVTALKPDGSSEVVNTKNVLIATGSEVTPFPGIEIDEEQIVSSTGALSLKEV 193

Query: 922  ----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQF 965
                            GSVW RLG+EVTA+EF+++IGG+GIDGEVAK  Q++L KQG++F
Sbjct: 194  PKRLIVIGAGVIGLELGSVWSRLGSEVTAVEFLSSIGGVGIDGEVAKTLQKVLTKQGLKF 253

Query: 966  KLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKD 1025
            KLGTKVT A KSG  + V+IE+ K+P KKEEL C+ LLVCVGRRPYTHNLGLEE+GIE+D
Sbjct: 254  KLGTKVTAAQKSGGVVKVSIEDAKNPDKKEELECEVLLVCVGRRPYTHNLGLEEMGIERD 313

Query: 1026 EKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072
            +KGR+PVNS FQTVIPNI AIGDCIHGPMLAHKAEDEGI+CVEGI G
Sbjct: 314  QKGRIPVNSHFQTVIPNIHAIGDCIHGPMLAHKAEDEGIICVEGITG 360

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|399108168|gb|AFP20531.1| dihydrolipoamide dehydrogenase E3 subunit [Tribolium castaneum]

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 192/287 (66%), Positives = 224/287 (78%), Gaps = 30/287 (10%)

Query: 811  YHLATKLFTQAGDKG--------VKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG 862
            YH+A      +GD G        V+L+L+ +MG K  AVKALTG IA LFK NKVT +NG
Sbjct: 92   YHMA-----HSGDLGARGISVDNVRLDLDKLMGQKENAVKALTGSIAQLFKKNKVTLING 146

Query: 863  HGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK- 921
            HGKITG N VT +K DGS+E V TKN+LIATGSEVTPFPGIE+DEE IVSSTGALSLK+ 
Sbjct: 147  HGKITGVNQVTALKPDGSSEVVNTKNVLIATGSEVTPFPGIEIDEEQIVSSTGALSLKEV 206

Query: 922  ----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQF 965
                            GSVW RLG+EVTA+EF+++IGG+GIDGEVAK  Q++L KQG++F
Sbjct: 207  PKRLIVIGAGVIGLELGSVWSRLGSEVTAVEFLSSIGGVGIDGEVAKTLQKVLTKQGLKF 266

Query: 966  KLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKD 1025
            KLGTKVT A KSG  + V+IE+ K+P KKEEL C+ LLVCVGRRPYTHNLGLEE+GIE+D
Sbjct: 267  KLGTKVTAAQKSGGVVKVSIEDAKNPDKKEELECEVLLVCVGRRPYTHNLGLEEMGIERD 326

Query: 1026 EKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072
            +KGR+PVNS FQTVIPNI AIGDCIHGPMLAHKAEDEGI+CVEGI G
Sbjct: 327  QKGRIPVNSHFQTVIPNIHAIGDCIHGPMLAHKAEDEGIICVEGITG 373

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|399108156|gb|AFP20525.1| dihydrolipoamide dehydrogenase E3 subunit [Rhyzopertha dominica]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 187/264 (70%), Positives = 217/264 (82%), Gaps = 17/264 (6%)

Query: 826  VKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVK 885
            V+LNL+ +M TKS AVKALTGGIA LFK NKV  +NGHGKITG N VT +K DGS+E V 
Sbjct: 114  VELNLDKLMQTKSNAVKALTGGIAMLFKKNKVHLINGHGKITGNNQVTALKPDGSSEVVN 173

Query: 886  TKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK-----------------GSVWGRL 928
            TKNILIATGSEVTPF GI +DEETIVSSTGALSLK+                 GSVW RL
Sbjct: 174  TKNILIATGSEVTPFQGIPIDEETIVSSTGALSLKQVPKRLVVIGAGVIGLELGSVWSRL 233

Query: 929  GAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENV 988
            GA+VTA+EF+N+IGG GIDGEVA+ FQ++L KQG++FKLGTKVT A K+G  I V++E+V
Sbjct: 234  GADVTAVEFLNSIGGAGIDGEVAQTFQKVLTKQGLKFKLGTKVTSAQKTGGAIKVSVEDV 293

Query: 989  KDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGD 1048
            K+P KKE+L CD LLVCVGRRPYT NLGLEE+GIE+D++GR+PVNS FQTVIPNI+AIGD
Sbjct: 294  KNPEKKEDLECDVLLVCVGRRPYTENLGLEEMGIERDQRGRIPVNSHFQTVIPNIYAIGD 353

Query: 1049 CIHGPMLAHKAEDEGIVCVEGIAG 1072
            CIHGPMLAHKAEDEGI+CVEGI G
Sbjct: 354  CIHGPMLAHKAEDEGIICVEGIKG 377

Source: Rhyzopertha dominica

Species: Rhyzopertha dominica

Genus: Rhyzopertha

Family: Bostrichidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|399108150|gb|AFP20522.1| dihydrolipoamide dehydrogenase E3 subunit [Rhyzopertha dominica] gi|399108174|gb|AFP20534.1| dihydrolipoamide dehydrogenase E3 subunit [Rhyzopertha dominica]

 Score =  381 bits (979), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/264 (70%), Positives = 217/264 (82%), Gaps = 17/264 (6%)

Query: 826  VKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVK 885
            V+LNL+ +M TKS AVKALTGGIA LFK NKV  +NGHGKITG N VT +K DGS+E V 
Sbjct: 114  VELNLDKLMQTKSNAVKALTGGIAMLFKKNKVHLINGHGKITGNNQVTALKPDGSSEVVN 173

Query: 886  TKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK-----------------GSVWGRL 928
            TKNILIATGSEVTPF GI +DEETIVSSTGALSLK+                 GSVW RL
Sbjct: 174  TKNILIATGSEVTPFQGIPIDEETIVSSTGALSLKQVPKRLVVIGAGVIGLELGSVWSRL 233

Query: 929  GAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENV 988
            GA+VTA+EF+N+IGG GIDGEVA+ FQ++L KQG++FKLGTKVT A K+G  I V++E+V
Sbjct: 234  GADVTAVEFLNSIGGAGIDGEVAQTFQKVLTKQGLKFKLGTKVTSAQKTGGAIKVSVEDV 293

Query: 989  KDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGD 1048
            K+P KKE+L CD LLVCVGRRPYT NLGLEE+GIE+D++GR+PVNS FQTVIPNI+AIGD
Sbjct: 294  KNPEKKEDLECDVLLVCVGRRPYTENLGLEEMGIERDQRGRIPVNSHFQTVIPNIYAIGD 353

Query: 1049 CIHGPMLAHKAEDEGIVCVEGIAG 1072
            CIHGPMLAHKAEDEGI+CVEGI G
Sbjct: 354  CIHGPMLAHKAEDEGIICVEGIKG 377

Source: Rhyzopertha dominica

Species: Rhyzopertha dominica

Genus: Rhyzopertha

Family: Bostrichidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1074
ZFIN|ZDB-GENE-040120-4	507	dldh "dihydrolipoamide dehydro	0.230	0.489	0.560	2.9e-101
FB|FBgn0036762	504	CG7430 [Drosophila melanogaste	0.229	0.488	0.571	5e-95
UNIPROTKB|F1SAF0	509	DLD "Dihydrolipoyl dehydrogena	0.208	0.440	0.521	2.5e-87
UNIPROTKB|Q5ZM32	508	DLD "Dihydrolipoyl dehydrogena	0.208	0.440	0.521	2.6e-87
UNIPROTKB|P49819	509	DLD "Dihydrolipoyl dehydrogena	0.208	0.440	0.513	5.6e-87
RGD|735073	509	Dld "dihydrolipoamide dehydrog	0.208	0.440	0.517	1.1e-86
UNIPROTKB|Q6P6R2	509	Dld "Dihydrolipoyl dehydrogena	0.208	0.440	0.517	1.1e-86
UNIPROTKB|P09623	509	DLD "Dihydrolipoyl dehydrogena	0.208	0.440	0.517	1.2e-86
UNIPROTKB|F1PAR0	509	DLD "Dihydrolipoyl dehydrogena	0.208	0.440	0.513	1.2e-86
MGI|MGI:107450	509	Dld "dihydrolipoamide dehydrog	0.208	0.440	0.508	1.5e-86

ZFIN|ZDB-GENE-040120-4 dldh "dihydrolipoamide dehydrogenase" [Danio rerio (taxid:7955)]

 Score = 701 (251.8 bits), Expect = 2.9e-101, Sum P(2) = 2.9e-101
 Identities = 149/266 (56%), Positives = 181/266 (68%)

Query:   824 KGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGS--- 880
             +G+ LNLE MM  KS AVKALTGGIAHLFK NKVT +NG G ITG N VT   +DG    
Sbjct:   113 QGISLNLEKMMAQKSGAVKALTGGIAHLFKQNKVTHVNGFGTITGKNQVTAKTADGEQVI 172

Query:   881 ----------TEEVKTKNILIATGSEVTPFPGIE---VDEETIVSSTGALSLKKGSVWGR 927
                       +E      I I   S V+    +    V EE IV   G + ++ GSVW R
Sbjct:   173 NTKNILIATGSEVTPFPGIEIDEDSVVSSTGALSLKNVPEELIVIGAGVIGVELGSVWQR 232

Query:   928 LGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIE 986
             LGA+VTA+EF+  +GGMGID E++K FQRIL KQG++FKL TKV GA+K  D  I V +E
Sbjct:   233 LGAKVTAVEFLGHVGGMGIDMEISKNFQRILQKQGLKFKLSTKVMGATKRPDGKIDVAVE 292

Query:   987 NVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAI 1046
                   K E L+CD LLVC+GRRP+T NLGLE +GIE D++GR+PVN RFQT +PNI+AI
Sbjct:   293 AAAGG-KNETLTCDVLLVCIGRRPFTGNLGLESVGIELDKRGRIPVNGRFQTNVPNIYAI 351

Query:  1047 GDCIHGPMLAHKAEDEGIVCVEGIAG 1072
             GD + GPMLAHKAEDEGI+CVEG+AG
Sbjct:   352 GDVVAGPMLAHKAEDEGIICVEGMAG 377

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004148 "dihydrolipoyl dehydrogenase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016668 "oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor" evidence=IEA

FB|FBgn0036762 CG7430 [Drosophila melanogaster (taxid:7227)]

 Score = 667 (239.9 bits), Expect = 5.0e-95, Sum P(2) = 5.0e-95
 Identities = 151/264 (57%), Positives = 178/264 (67%)

Query:   826 VKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVK 885
             V L+LE +MG KS AVKALTGGIA LFK NKVTQL G G I  PN V V KSDGSTE VK
Sbjct:   112 VSLDLEKLMGQKSNAVKALTGGIAMLFKKNKVTQLTGFGTIVNPNEVEVKKSDGSTETVK 171

Query:   886 TKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK-GSVWGRLGAEVTAIEFMNAIGGM 944
             TKNILIATGSEVTPFPGIE+DEE IVSSTGAL L K       +GA V  +E  +    +
Sbjct:   172 TKNILIATGSEVTPFPGIEIDEEVIVSSTGALKLAKVPKHLVVIGAGVIGLELGSVWSRL 231

Query:   945 GIDGEVAKQFQRILGKQGMQ------F-KLGTKVTGASKSGDNITVTIENVKDPT----- 992
             G +   A +F   +G  G+       F K+ TK     K G  +T    +  + T     
Sbjct:   232 GAE-VTAIEFMDTIGGVGIDNEVSKTFQKVLTKQGLKFKLGTKVTAASRSGDNVTVSVEN 290

Query:   993 ----KKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGD 1048
                 +KEE+ CDALLV VGRRPYT  LGLE +GI KD++GR+PVN+ FQTV+PNI+AIGD
Sbjct:   291 AKSGEKEEIQCDALLVSVGRRPYTEGLGLEAVGIVKDDRGRIPVNATFQTVVPNIYAIGD 350

Query:  1049 CIHGPMLAHKAEDEGIVCVEGIAG 1072
             CIHGPMLAHKAEDEG++ +EGI G
Sbjct:   351 CIHGPMLAHKAEDEGLITIEGING 374

GO:0005960 "glycine cleavage complex" evidence=ISS

GO:0006099 "tricarboxylic acid cycle" evidence=ISS

GO:0006546 "glycine catabolic process" evidence=ISS

GO:0004148 "dihydrolipoyl dehydrogenase activity" evidence=ISS

GO:0006748 "lipoamide metabolic process" evidence=ISS

GO:0005947 "mitochondrial alpha-ketoglutarate dehydrogenase complex" evidence=ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

UNIPROTKB|F1SAF0 DLD "Dihydrolipoyl dehydrogenase" [Sus scrofa (taxid:9823)]

 Score = 575 (207.5 bits), Expect = 2.5e-87, Sum P(2) = 2.5e-87
 Identities = 120/230 (52%), Positives = 155/230 (67%)

Query:   847 GIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGI--- 903
             G   +   N+VT     G     NT  ++ + GS E      I I   + V+    +   
Sbjct:   152 GYGKITGKNQVTATKADGSTEVINTKNILIATGS-EVTPFPGITIDEDTVVSSTGALSLK 210

Query:   904 EVDEETIVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGM 963
             +V E+ +V   G + ++ GSVW RLGA+VTA+EF+  +GG+GID EV+K FQRIL KQG 
Sbjct:   211 KVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGIGIDMEVSKNFQRILQKQGF 270

Query:   964 QFKLGTKVTGASKSGD-NITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGI 1022
             +FKL TKV GA+K  D NI V+IE      K E ++CD LLVC+GRRP+T NLGLEE+GI
Sbjct:   271 KFKLNTKVIGATKKSDGNIDVSIEAASGG-KAEVITCDVLLVCIGRRPFTQNLGLEELGI 329

Query:  1023 EKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072
             E D +GR+PVN+RFQT IPNI+AIGD + GPMLAHKAEDEGI+CVEG+AG
Sbjct:   330 ELDPRGRIPVNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAG 379

GO:0048240 "sperm capacitation" evidence=IEA

GO:0043159 "acrosomal matrix" evidence=IEA

GO:0042391 "regulation of membrane potential" evidence=IEA

GO:0007369 "gastrulation" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004148 "dihydrolipoyl dehydrogenase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|Q5ZM32 DLD "Dihydrolipoyl dehydrogenase" [Gallus gallus (taxid:9031)]

 Score = 574 (207.1 bits), Expect = 2.6e-87, Sum P(2) = 2.6e-87
 Identities = 120/230 (52%), Positives = 156/230 (67%)

Query:   847 GIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGI--- 903
             G   +   N+VT     G     NT  ++ + GS E      I I   + V+    +   
Sbjct:   151 GFGRITGKNQVTATKDDGSTQVINTKNILIATGS-EVAPFPGITIDEDNIVSSTGALSLK 209

Query:   904 EVDEETIVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGM 963
             +V E+ +V   G + ++ GSVW RLGA+VTA+EFM  +GGMGID E++K FQRIL KQG+
Sbjct:   210 KVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFMGHVGGMGIDMEISKNFQRILQKQGL 269

Query:   964 QFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGI 1022
             +FKL TKVTGA+K  D  I V +E      K E ++CD LLVC+GRRP+T NLGLE+IGI
Sbjct:   270 KFKLNTKVTGATKKPDGKIDVAVEAAAGG-KAEVITCDMLLVCIGRRPFTANLGLEDIGI 328

Query:  1023 EKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072
             E D++GR+PVN+RFQT IPNI+AIGD + GPMLAHKAEDEGI+CVEG+AG
Sbjct:   329 ELDKRGRIPVNNRFQTKIPNIYAIGDVVAGPMLAHKAEDEGILCVEGMAG 378

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0004148 "dihydrolipoyl dehydrogenase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0007369 "gastrulation" evidence=IEA

GO:0042391 "regulation of membrane potential" evidence=IEA

GO:0043159 "acrosomal matrix" evidence=IEA

GO:0048240 "sperm capacitation" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISS

UNIPROTKB|P49819 DLD "Dihydrolipoyl dehydrogenase, mitochondrial" [Canis lupus familiaris (taxid:9615)]

 Score = 569 (205.4 bits), Expect = 5.6e-87, Sum P(2) = 5.6e-87
 Identities = 118/230 (51%), Positives = 155/230 (67%)

Query:   847 GIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGI--- 903
             G   +   N+VT     G     +T  ++ + GS E      I I   + V+    +   
Sbjct:   152 GYGKITGKNQVTAKKADGSTQVIDTKNILIATGS-EVTPFPGITIDEDTIVSSTGALSLK 210

Query:   904 EVDEETIVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGM 963
             +V E+ +V   G + ++ GSVW RLGA+VTA+EF+  +GG+GID E++K FQRIL KQG 
Sbjct:   211 KVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGF 270

Query:   964 QFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGI 1022
             +FKL TKVTGA+K  D  I V+IE      K E ++CD LLVC+GRRP+T NLGLEE+GI
Sbjct:   271 KFKLNTKVTGATKKSDGKIDVSIEGASGG-KAEVITCDVLLVCIGRRPFTQNLGLEELGI 329

Query:  1023 EKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072
             E D +GR+PVN+RFQT IPNI+AIGD + GPMLAHKAEDEGI+CVEG+AG
Sbjct:   330 ELDPRGRIPVNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAG 379

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0004148 "dihydrolipoyl dehydrogenase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

RGD|735073 Dld "dihydrolipoamide dehydrogenase" [Rattus norvegicus (taxid:10116)]

 Score = 573 (206.8 bits), Expect = 1.1e-86, Sum P(2) = 1.1e-86
 Identities = 119/230 (51%), Positives = 154/230 (66%)

Query:   847 GIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGI--- 903
             G   +   N+VT     G      T  ++ + GS E      I I   + V+    +   
Sbjct:   152 GFGKITGKNQVTATTADGSTQVIGTKNILIATGS-EVTPFPGITIDEDTIVSSTGALSLK 210

Query:   904 EVDEETIVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGM 963
             +V E+ +V   G + ++ GSVW RLGA+VTA+EF+  +GG+GID E++K FQRIL KQG 
Sbjct:   211 KVPEKLVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGIGIDMEISKNFQRILQKQGF 270

Query:   964 QFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGI 1022
             +FKL TKVTGA+K  D  I V++E      K E ++CD LLVC+GRRP+T NLGLEE+GI
Sbjct:   271 KFKLNTKVTGATKKSDGKIDVSVEAASGG-KAEVITCDVLLVCIGRRPFTQNLGLEELGI 329

Query:  1023 EKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072
             E D KGR+PVN+RFQT IPNIFAIGD + GPMLAHKAEDEGI+CVEG+AG
Sbjct:   330 ELDPKGRIPVNTRFQTKIPNIFAIGDVVAGPMLAHKAEDEGIICVEGMAG 379

GO:0004148 "dihydrolipoyl dehydrogenase activity" evidence=IEA;ISO;IDA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0005929 "cilium" evidence=ISO

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=IDA

GO:0006103 "2-oxoglutarate metabolic process" evidence=IDA

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=ISO

GO:0006508 "proteolysis" evidence=ISO

GO:0007369 "gastrulation" evidence=ISO

GO:0007568 "aging" evidence=IEP

GO:0009106 "lipoate metabolic process" evidence=IDA

GO:0042391 "regulation of membrane potential" evidence=ISO

GO:0043159 "acrosomal matrix" evidence=ISO

GO:0043544 "lipoamide binding" evidence=IDA

GO:0045252 "oxoglutarate dehydrogenase complex" evidence=IDA

GO:0045254 "pyruvate dehydrogenase complex" evidence=IDA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0048240 "sperm capacitation" evidence=ISO

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA;IDA

GO:0051068 "dihydrolipoamide metabolic process" evidence=IDA

GO:0051287 "NAD binding" evidence=IDA

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|Q6P6R2 Dld "Dihydrolipoyl dehydrogenase, mitochondrial" [Rattus norvegicus (taxid:10116)]

 Score = 573 (206.8 bits), Expect = 1.1e-86, Sum P(2) = 1.1e-86
 Identities = 119/230 (51%), Positives = 154/230 (66%)

Query:   847 GIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGI--- 903
             G   +   N+VT     G      T  ++ + GS E      I I   + V+    +   
Sbjct:   152 GFGKITGKNQVTATTADGSTQVIGTKNILIATGS-EVTPFPGITIDEDTIVSSTGALSLK 210

Query:   904 EVDEETIVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGM 963
             +V E+ +V   G + ++ GSVW RLGA+VTA+EF+  +GG+GID E++K FQRIL KQG 
Sbjct:   211 KVPEKLVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGIGIDMEISKNFQRILQKQGF 270

Query:   964 QFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGI 1022
             +FKL TKVTGA+K  D  I V++E      K E ++CD LLVC+GRRP+T NLGLEE+GI
Sbjct:   271 KFKLNTKVTGATKKSDGKIDVSVEAASGG-KAEVITCDVLLVCIGRRPFTQNLGLEELGI 329

Query:  1023 EKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072
             E D KGR+PVN+RFQT IPNIFAIGD + GPMLAHKAEDEGI+CVEG+AG
Sbjct:   330 ELDPKGRIPVNTRFQTKIPNIFAIGDVVAGPMLAHKAEDEGIICVEGMAG 379

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|P09623 DLD "Dihydrolipoyl dehydrogenase, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 569 (205.4 bits), Expect = 1.2e-86, Sum P(2) = 1.2e-86
 Identities = 119/230 (51%), Positives = 154/230 (66%)

Query:   847 GIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGI--- 903
             G   +   N+VT     G     NT  ++ + GS E      I I   + V+    +   
Sbjct:   152 GYGKITGKNQVTATKADGSTEVINTKNILIATGS-EVTPFPGITIDEDTVVSSTGALSLK 210

Query:   904 EVDEETIVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGM 963
             +V E+ +V   G + ++ GSVW RLGA+VTA+E +  +GG+GID EV+K FQRIL KQG 
Sbjct:   211 KVPEKMVVIGAGVIGVELGSVWQRLGADVTAVELLGHVGGIGIDMEVSKNFQRILQKQGF 270

Query:   964 QFKLGTKVTGASKSGD-NITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGI 1022
             +FKL TKV GA+K  D NI V+IE      K E ++CD LLVC+GRRP+T NLGLEE+GI
Sbjct:   271 KFKLNTKVIGATKKSDGNIDVSIEAASGG-KAEVITCDVLLVCIGRRPFTQNLGLEELGI 329

Query:  1023 EKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072
             E D +GR+PVN+RFQT IPNI+AIGD + GPMLAHKAEDEGI+CVEG+AG
Sbjct:   330 ELDPRGRIPVNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAG 379

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0004148 "dihydrolipoyl dehydrogenase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|F1PAR0 DLD "Dihydrolipoyl dehydrogenase" [Canis lupus familiaris (taxid:9615)]

 Score = 566 (204.3 bits), Expect = 1.2e-86, Sum P(2) = 1.2e-86
 Identities = 118/230 (51%), Positives = 154/230 (66%)

Query:   847 GIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGI--- 903
             G   +   N+VT     G     +T  ++ + GS E      I I   + V+    +   
Sbjct:   152 GYGKITGKNQVTAKKADGSTQVIDTKNILIATGS-EVTPFPGITIDEDTIVSSTGALSLK 210

Query:   904 EVDEETIVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGM 963
             +V E+ +V   G + ++ GSVW RLGA+VTA+EF+  +GG+GID E++K FQRIL KQG 
Sbjct:   211 KVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGF 270

Query:   964 QFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGI 1022
             +FKL TKVTGA+K  D  I V IE      K E ++CD LLVC+GRRP+T NLGLEE+GI
Sbjct:   271 KFKLNTKVTGATKKSDGKIDVFIEGASGG-KAEVITCDVLLVCIGRRPFTQNLGLEELGI 329

Query:  1023 EKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072
             E D +GR+PVN+RFQT IPNI+AIGD + GPMLAHKAEDEGI+CVEG+AG
Sbjct:   330 ELDPRGRIPVNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAG 379

GO:0048240 "sperm capacitation" evidence=IEA

GO:0043159 "acrosomal matrix" evidence=IEA

GO:0042391 "regulation of membrane potential" evidence=IEA

GO:0007369 "gastrulation" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004148 "dihydrolipoyl dehydrogenase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

MGI|MGI:107450 Dld "dihydrolipoamide dehydrogenase" [Mus musculus (taxid:10090)]

 Score = 569 (205.4 bits), Expect = 1.5e-86, Sum P(2) = 1.5e-86
 Identities = 117/230 (50%), Positives = 155/230 (67%)

Query:   847 GIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGI--- 903
             G   +   N+VT     G     +T  ++ + GS E      I I   + V+    +   
Sbjct:   152 GFGKITGKNQVTATKADGSTQVIDTKNILVATGS-EVTPFPGITIDEDTIVSSTGALSLK 210

Query:   904 EVDEETIVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGM 963
             +V E+ +V   G + ++ GSVW RLGA+VTA+EF+  +GG+GID E++K FQRIL +QG 
Sbjct:   211 KVPEKLVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGIGIDMEISKNFQRILQRQGF 270

Query:   964 QFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGI 1022
             +FKL TKVTGA+K  D  I V++E      K E ++CD LLVC+GRRP+T NLGLEE+GI
Sbjct:   271 KFKLNTKVTGATKKSDGKIDVSVEAASGG-KAEVITCDVLLVCIGRRPFTQNLGLEELGI 329

Query:  1023 EKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072
             E D KGR+PVN+RFQT IPNI+AIGD + GPMLAHKAEDEGI+CVEG+AG
Sbjct:   330 ELDPKGRIPVNNRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAG 379

GO:0004148 "dihydrolipoyl dehydrogenase activity" evidence=ISO;IMP

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005929 "cilium" evidence=IDA

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=ISO

GO:0006103 "2-oxoglutarate metabolic process" evidence=ISO

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=IMP

GO:0006508 "proteolysis" evidence=IDA

GO:0007369 "gastrulation" evidence=IMP

GO:0009106 "lipoate metabolic process" evidence=ISO

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016668 "oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor" evidence=IEA

GO:0042391 "regulation of membrane potential" evidence=IMP

GO:0043159 "acrosomal matrix" evidence=IDA

GO:0043544 "lipoamide binding" evidence=ISO

GO:0045252 "oxoglutarate dehydrogenase complex" evidence=ISO

GO:0045254 "pyruvate dehydrogenase complex" evidence=ISO

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0048240 "sperm capacitation" evidence=IDA

GO:0050660 "flavin adenine dinucleotide binding" evidence=ISO

GO:0051068 "dihydrolipoamide metabolic process" evidence=ISO

GO:0051287 "NAD binding" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P09623	DLDH_PIG	1, ., 8, ., 1, ., 4	0.6431	0.2430	0.5127	yes	N/A
P09622	DLDH_HUMAN	1, ., 8, ., 1, ., 4	0.6360	0.2430	0.5127	yes	N/A
Q54EW8	DLDH_DICDI	1, ., 8, ., 1, ., 4	0.525	0.2411	0.5307	yes	N/A
O08749	DLDH_MOUSE	1, ., 8, ., 1, ., 4	0.6325	0.2430	0.5127	yes	N/A
P49819	DLDH_CANFA	1, ., 8, ., 1, ., 4	0.6431	0.2430	0.5127	yes	N/A
Q8CIZ7	DLDH_CRIGR	1, ., 8, ., 1, ., 4	0.6325	0.2430	0.5127	yes	N/A
O17953	DLDH_CAEEL	1, ., 8, ., 1, ., 4	0.6021	0.2420	0.5252	yes	N/A
Q6P6R2	DLDH_RAT	1, ., 8, ., 1, ., 4	0.6431	0.2430	0.5127	yes	N/A
Q5R4B1	DLDH_PONAB	1, ., 8, ., 1, ., 4	0.6360	0.2430	0.5127	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	1074
PRK06115	466	PRK06115, PRK06115, dihydrolipoamide dehydrogenase	1e-77
TIGR01350	460	TIGR01350, lipoamide_DH, dihydrolipoamide dehydrog	3e-77
PRK06327	475	PRK06327, PRK06327, dihydrolipoamide dehydrogenase	5e-76
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	3e-75
PRK06467	471	PRK06467, PRK06467, dihydrolipoamide dehydrogenase	5e-70
PRK06416	462	PRK06416, PRK06416, dihydrolipoamide dehydrogenase	1e-68
PRK06292	460	PRK06292, PRK06292, dihydrolipoamide dehydrogenase	4e-68
PRK05976	472	PRK05976, PRK05976, dihydrolipoamide dehydrogenase	4e-52
PRK07818	466	PRK07818, PRK07818, dihydrolipoamide dehydrogenase	3e-41
PRK05249	461	PRK05249, PRK05249, soluble pyridine nucleotide tr	8e-36
PRK06912	458	PRK06912, acoL, dihydrolipoamide dehydrogenase; Va	4e-34
PRK06327	475	PRK06327, PRK06327, dihydrolipoamide dehydrogenase	4e-33
PRK06370	463	PRK06370, PRK06370, mercuric reductase; Validated	1e-32
pfam02852	110	pfam02852, Pyr_redox_dim, Pyridine nucleotide-disu	5e-32
PRK06115	466	PRK06115, PRK06115, dihydrolipoamide dehydrogenase	2e-31
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	4e-31
TIGR01350	460	TIGR01350, lipoamide_DH, dihydrolipoamide dehydrog	1e-29
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	6e-29
PRK06292	460	PRK06292, PRK06292, dihydrolipoamide dehydrogenase	2e-28
PLN02507	499	PLN02507, PLN02507, glutathione reductase	2e-28
PRK06116	450	PRK06116, PRK06116, glutathione reductase; Validat	7e-28
PRK06467	471	PRK06467, PRK06467, dihydrolipoamide dehydrogenase	8e-28
TIGR02053	463	TIGR02053, MerA, mercuric reductase	3e-27
PTZ00153	659	PTZ00153, PTZ00153, lipoamide dehydrogenase; Provi	3e-26
PRK07251	438	PRK07251, PRK07251, pyridine nucleotide-disulfide	4e-26
PRK06416	462	PRK06416, PRK06416, dihydrolipoamide dehydrogenase	3e-25
PRK05976	472	PRK05976, PRK05976, dihydrolipoamide dehydrogenase	3e-24
TIGR01350	460	TIGR01350, lipoamide_DH, dihydrolipoamide dehydrog	2e-23
PRK06467	471	PRK06467, PRK06467, dihydrolipoamide dehydrogenase	4e-23
PRK06327	475	PRK06327, PRK06327, dihydrolipoamide dehydrogenase	2e-22
TIGR01438	484	TIGR01438, TGR, thioredoxin and glutathione reduct	1e-20
TIGR01424	446	TIGR01424, gluta_reduc_2, glutathione-disulfide re	1e-20
PRK06115	466	PRK06115, PRK06115, dihydrolipoamide dehydrogenase	6e-19
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	8e-19
PRK14727	479	PRK14727, PRK14727, putative mercuric reductase; P	2e-17
PLN02546	558	PLN02546, PLN02546, glutathione reductase	2e-17
PRK07846	451	PRK07846, PRK07846, mycothione reductase; Reviewed	9e-17
PRK13748	561	PRK13748, PRK13748, putative mercuric reductase; P	9e-17
PRK05976	472	PRK05976, PRK05976, dihydrolipoamide dehydrogenase	1e-16
PRK06416	462	PRK06416, PRK06416, dihydrolipoamide dehydrogenase	3e-16
PRK07818	466	PRK07818, PRK07818, dihydrolipoamide dehydrogenase	3e-16
PRK06370	463	PRK06370, PRK06370, mercuric reductase; Validated	4e-16
PRK07845	466	PRK07845, PRK07845, flavoprotein disulfide reducta	4e-15
PRK14694	468	PRK14694, PRK14694, putative mercuric reductase; P	1e-14
PRK08010	441	PRK08010, PRK08010, pyridine nucleotide-disulfide	1e-14
TIGR02053	463	TIGR02053, MerA, mercuric reductase	2e-14
PRK06292	460	PRK06292, PRK06292, dihydrolipoamide dehydrogenase	3e-14
TIGR01423	486	TIGR01423, trypano_reduc, trypanothione-disulfide	3e-14
TIGR01421	450	TIGR01421, gluta_reduc_1, glutathione-disulfide re	3e-14
TIGR03452	452	TIGR03452, mycothione_red, mycothione reductase	1e-13
PTZ00058	561	PTZ00058, PTZ00058, glutathione reductase; Provisi	2e-13
COG0446	415	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent	5e-13
PTZ00052	499	PTZ00052, PTZ00052, thioredoxin reductase; Provisi	1e-12
PRK04965	377	PRK04965, PRK04965, NADH:flavorubredoxin oxidoredu	6e-11
COG0492	305	COG0492, TrxB, Thioredoxin reductase [Posttranslat	3e-10
PRK06912	458	PRK06912, acoL, dihydrolipoamide dehydrogenase; Va	6e-10
PRK12770	352	PRK12770, PRK12770, putative glutamate synthase su	5e-09
COG1251	793	COG1251, NirB, NAD(P)H-nitrite reductase [Energy p	5e-09
COG1252	405	COG1252, Ndh, NADH dehydrogenase, FAD-containing s	6e-09
PTZ00153	659	PTZ00153, PTZ00153, lipoamide dehydrogenase; Provi	7e-09
PRK07846	451	PRK07846, PRK07846, mycothione reductase; Reviewed	9e-09
TIGR03452	452	TIGR03452, mycothione_red, mycothione reductase	4e-08
TIGR02374	785	TIGR02374, nitri_red_nirB, nitrite reductase [NAD(	1e-07
PRK06912	458	PRK06912, acoL, dihydrolipoamide dehydrogenase; Va	2e-07
TIGR03385	427	TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase	4e-07
PRK14727	479	PRK14727, PRK14727, putative mercuric reductase; P	5e-07
pfam00070	82	pfam00070, Pyr_redox, Pyridine nucleotide-disulphi	5e-07
PRK07251	438	PRK07251, PRK07251, pyridine nucleotide-disulfide	2e-06
PRK07845	466	PRK07845, PRK07845, flavoprotein disulfide reducta	2e-06
PRK12810	471	PRK12810, gltD, glutamate synthase subunit beta; R	4e-06
PRK06370	463	PRK06370, PRK06370, mercuric reductase; Validated	6e-06
TIGR01424	446	TIGR01424, gluta_reduc_2, glutathione-disulfide re	7e-06
PRK13512	438	PRK13512, PRK13512, coenzyme A disulfide reductase	7e-06
TIGR01318	467	TIGR01318, gltD_gamma_fam, glutamate synthase smal	8e-06
TIGR02053	463	TIGR02053, MerA, mercuric reductase	9e-06
PRK09564	444	PRK09564, PRK09564, coenzyme A disulfide reductase	9e-06
PRK13748	561	PRK13748, PRK13748, putative mercuric reductase; P	1e-05
PRK14694	468	PRK14694, PRK14694, putative mercuric reductase; P	1e-05
TIGR03169	364	TIGR03169, Nterm_to_SelD, pyridine nucleotide-disu	1e-05
PRK07818	466	PRK07818, PRK07818, dihydrolipoamide dehydrogenase	2e-05
PRK05249	461	PRK05249, PRK05249, soluble pyridine nucleotide tr	3e-05
PRK14694	468	PRK14694, PRK14694, putative mercuric reductase; P	3e-05
TIGR01292	299	TIGR01292, TRX_reduct, thioredoxin-disulfide reduc	3e-05
TIGR01423	486	TIGR01423, trypano_reduc, trypanothione-disulfide	4e-05
PRK14727	479	PRK14727, PRK14727, putative mercuric reductase; P	5e-05
PTZ00153	659	PTZ00153, PTZ00153, lipoamide dehydrogenase; Provi	6e-05
PRK09853	1019	PRK09853, PRK09853, putative selenate reductase su	7e-05
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	1e-04
COG0493	457	COG0493, GltD, NADPH-dependent glutamate synthase	1e-04
PRK07846	451	PRK07846, PRK07846, mycothione reductase; Reviewed	4e-04
PRK05249	461	PRK05249, PRK05249, soluble pyridine nucleotide tr	7e-04
PRK08010	441	PRK08010, PRK08010, pyridine nucleotide-disulfide	7e-04
PRK06116	450	PRK06116, PRK06116, glutathione reductase; Validat	0.001
TIGR01424	446	TIGR01424, gluta_reduc_2, glutathione-disulfide re	0.001
PRK07846	451	PRK07846, PRK07846, mycothione reductase; Reviewed	0.001
PRK13748	561	PRK13748, PRK13748, putative mercuric reductase; P	0.001
PRK13984	604	PRK13984, PRK13984, putative oxidoreductase; Provi	0.001
TIGR01316	449	TIGR01316, gltA, glutamate synthase (NADPH), homot	0.001
TIGR03315	1012	TIGR03315, Se_ygfK, putative selenate reductase, Y	0.001
PRK06116	450	PRK06116, PRK06116, glutathione reductase; Validat	0.002
PRK12771	564	PRK12771, PRK12771, putative glutamate synthase (N	0.002
PTZ00058	561	PTZ00058, PTZ00058, glutathione reductase; Provisi	0.003
TIGR03452	452	TIGR03452, mycothione_red, mycothione reductase	0.004
TIGR03452	452	TIGR03452, mycothione_red, mycothione reductase	0.004

>gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed

 Score =  262 bits (672), Expect = 1e-77
 Identities = 121/263 (46%), Positives = 164/263 (62%), Gaps = 20/263 (7%)

Query: 827  KLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKT 886
             LNL  MM  K  +V+ALT G+  LF+ NKV  + G G++ G   V V   DGS  +++ 
Sbjct: 78   TLNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEA 137

Query: 887  KNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK-----------------GSVWGRLG 929
            K+I+IATGSE TP PG+ +D + I+ STGALSL +                 GSVW RLG
Sbjct: 138  KDIVIATGSEPTPLPGVTIDNQRIIDSTGALSLPEVPKHLVVIGAGVIGLELGSVWRRLG 197

Query: 930  AEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVK 989
            A+VT +E+++ I   G D E AK  Q+ L KQGM+FKLG+KVTGA+   D +++T+E   
Sbjct: 198  AQVTVVEYLDRICP-GTDTETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAA 256

Query: 990  DPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDC 1049
                 E L  D +LV +GRRPYT  LGLE +G+E D++G +  N   +T +P ++ IGD 
Sbjct: 257  GGA-AETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGML-ANDHHRTSVPGVWVIGDV 314

Query: 1050 IHGPMLAHKAEDEGIVCVEGIAG 1072
              GPMLAHKAEDE + C+E IAG
Sbjct: 315  TSGPMLAHKAEDEAVACIERIAG 337

Length = 466

>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase

 Score =  261 bits (669), Expect = 3e-77
 Identities = 107/268 (39%), Positives = 155/268 (57%), Gaps = 24/268 (8%)

Query: 825  GVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEV 884
             V ++ E M   K+  VK L GG++ L K NKVT + G  K   P TV+V   +G  E +
Sbjct: 72   NVSVDWEKMQKRKNKVVKKLVGGVSGLLKKNKVTVIKGEAKFLDPGTVSVTGENG-EETL 130

Query: 885  KTKNILIATGSEVTPFPG-IEVDEETIVSSTGALSLKK-----------------GSVWG 926
            + KNI+IATGS     PG  + D + +++STGAL+L++                  S++ 
Sbjct: 131  EAKNIIIATGSRPRSLPGPFDFDGKVVITSTGALNLEEVPESLVIIGGGVIGVEFASIFA 190

Query: 927  RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIE 986
             LG++VT IE ++ I   G D EV+K  Q+ L K+G++    TKVT   K+ D +T   +
Sbjct: 191  SLGSKVTVIEMLDRILP-GEDAEVSKVLQKALKKKGVKILTNTKVTAVEKNDDQVTYENK 249

Query: 987  NVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAI 1046
                  + E L+ + +LV VGR+P T  LGLE++G+E DE+GR+ V+   +T +P I+AI
Sbjct: 250  G----GETETLTGEKVLVAVGRKPNTEGLGLEKLGVELDERGRIVVDEYMRTNVPGIYAI 305

Query: 1047 GDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
            GD I GPMLAH A  EGIV  E IAG +
Sbjct: 306  GDVIGGPMLAHVASHEGIVAAENIAGKE 333

This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 460

>gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated

 Score =  258 bits (661), Expect = 5e-76
 Identities = 108/286 (37%), Positives = 151/286 (52%), Gaps = 24/286 (8%)

Query: 810  NYHLATKLFTQAG--DKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKIT 867
             +  A   F   G    GVK+++  M+  K   VK +TGGI  LFK NK+T L G G   
Sbjct: 66   EFENAGHHFADHGIHVDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFV 125

Query: 868  GPNTV-TVIKSDG-STEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK---- 921
            G       IK  G     +  K+++IATGSE    PG+  D + I+ +TGAL+  +    
Sbjct: 126  GKTDAGYEIKVTGEDETVITAKHVIIATGSEPRHLPGVPFDNKIILDNTGALNFTEVPKK 185

Query: 922  -------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLG 968
                         GSVW RLGAEVT +E + A      D +VAK+  +   KQG+   LG
Sbjct: 186  LAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA-ADEQVAKEAAKAFTKQGLDIHLG 244

Query: 969  TKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKG 1028
             K+      G  ++V   +     +  E   D L+V +GR P T  LGLE +G++ DE+G
Sbjct: 245  VKIGEIKTGGKGVSVAYTDADGEAQTLE--VDKLIVSIGRVPNTDGLGLEAVGLKLDERG 302

Query: 1029 RVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
             +PV+   +T +PN++AIGD + GPMLAHKAE+EG+   E IAG K
Sbjct: 303  FIPVDDHCRTNVPNVYAIGDVVRGPMLAHKAEEEGVAVAERIAGQK 348

Length = 475

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score =  255 bits (654), Expect = 3e-75
 Identities = 98/268 (36%), Positives = 142/268 (52%), Gaps = 24/268 (8%)

Query: 824  KGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEE 883
            +  K++ E ++  K   V+ LTGG+  L K N V  + G  +   P+TV V       E 
Sbjct: 76   EVPKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVT--GEDKET 133

Query: 884  VKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK-----------------GSVWG 926
            +   NI+IATGS     PG  +D   I+ S+ AL L +                  SV+ 
Sbjct: 134  ITADNIIIATGSRPRIPPGPGIDGARILDSSDALFLLELPKSLVIVGGGYIGLEFASVFA 193

Query: 927  RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIE 986
             LG++VT +E  + I   G D E++K+  + L K G++  L TKVT   K  D + VT+E
Sbjct: 194  ALGSKVTVVERGDRILP-GEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLE 252

Query: 987  NVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAI 1046
            + +  T    +  DA+LV +GR+P T  LGLE  G+E D++G + V+ +  T +P I+AI
Sbjct: 253  DGEGGT----IEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPGIYAI 308

Query: 1047 GDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
            GD I GPMLAH A  EG +  E IAG K
Sbjct: 309  GDVIGGPMLAHVAMAEGRIAAENIAGGK 336

Length = 454

>gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed

 Score =  241 bits (618), Expect = 5e-70
 Identities = 104/268 (38%), Positives = 141/268 (52%), Gaps = 21/268 (7%)

Query: 824  KGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEE 883
               K++++ M   K   VK LTGG+A + K  KVT +NG GK TG NT+ V   DG T  
Sbjct: 75   GEPKIDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTV 134

Query: 884  VKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK-----------------GSVWG 926
            ++  N +IA GS     P I  D+  I  ST AL LK+                 G+V+ 
Sbjct: 135  IEFDNAIIAAGSRPIQLPFIPHDDPRIWDSTDALELKEVPKRLLVMGGGIIGLEMGTVYH 194

Query: 927  RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIE 986
            RLG+EV  +E  + +     D ++ K F + + KQ     L TKVT      D I VT+E
Sbjct: 195  RLGSEVDVVEMFDQVIPAA-DKDIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDGIYVTME 252

Query: 987  NVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAI 1046
              K P + +    DA+LV VGR P    L  E+ G+E DE+G + V+ + +T +P+IFAI
Sbjct: 253  GKKAPAEPQRY--DAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVPHIFAI 310

Query: 1047 GDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
            GD +  PMLAHK   EG V  E IAG K
Sbjct: 311  GDIVGQPMLAHKGVHEGHVAAEVIAGKK 338

Length = 471

>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed

 Score =  237 bits (607), Expect = 1e-68
 Identities = 107/252 (42%), Positives = 147/252 (58%), Gaps = 25/252 (9%)

Query: 841  VKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPF 900
            V  LTGG+  L K NKV  + G  K+  PNTV V+  DG  +    KNI++ATGS     
Sbjct: 91   VNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDG-EQTYTAKNIILATGSRPREL 149

Query: 901  PGIEVDEETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGG 943
            PGIE+D   I +S  AL+L +                  S +  LGAEVT +E +  I  
Sbjct: 150  PGIEIDGRVIWTSDEALNLDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRI-- 207

Query: 944  M-GIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDAL 1002
            + G D E++K  +R L K+G++ K G K     ++ D +TVT+E   D  K+E L  D +
Sbjct: 208  LPGEDKEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLE---DGGKEETLEADYV 264

Query: 1003 LVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDE 1062
            LV VGRRP T NLGLEE+G++ D +G + V+ + +T +PNI+AIGD + GPMLAHKA  E
Sbjct: 265  LVAVGRRPNTENLGLEELGVKTD-RGFIEVDEQLRTNVPNIYAIGDIVGGPMLAHKASAE 323

Query: 1063 GIVCVEGIAGDK 1074
            GI+  E IAG+ 
Sbjct: 324  GIIAAEAIAGNP 335

Length = 462

>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated

 Score =  235 bits (603), Expect = 4e-68
 Identities = 99/269 (36%), Positives = 135/269 (50%), Gaps = 29/269 (10%)

Query: 825  GVKLNLETMMGTKSAAVKALTGGIAH-LFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEE 883
            G K++ + +M           GG+   L K  K+ ++ G  +   PNTV V     + E 
Sbjct: 74   GPKIDFKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEV-----NGER 128

Query: 884  VKTKNILIATGSEVTPFPGIE-VDEETIVSSTGALSLKK-----------------GSVW 925
            ++ KNI+IATGS V P PG+  +  + +++S  A  L K                 G   
Sbjct: 129  IEAKNIVIATGSRVPPIPGVWLILGDRLLTSDDAFELDKLPKSLAVIGGGVIGLELGQAL 188

Query: 926  GRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTI 985
             RLG +VT  E  + I     D EV+KQ Q+IL K+  + KLG KVT   KSGD     +
Sbjct: 189  SRLGVKVTVFERGDRILP-LEDPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEK---V 243

Query: 986  ENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFA 1045
            E ++   K E +  D +LV  GRRP T  LGLE  GIE DE+GR  V+   QT +P I+A
Sbjct: 244  EELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGIYA 303

Query: 1046 IGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
             GD    P L H+A DEG +  E  AGD 
Sbjct: 304  AGDVNGKPPLLHEAADEGRIAAENAAGDV 332

Length = 460

>gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated

 Score =  190 bits (484), Expect = 4e-52
 Identities = 93/274 (33%), Positives = 131/274 (47%), Gaps = 28/274 (10%)

Query: 825  GVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGP-------NTVTVIKS 877
            G  L+   +   K   V  LT G+A L K  K+   +G G+I GP        TV+V   
Sbjct: 75   GPALDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETE 134

Query: 878  DGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK---------------- 921
             G  E +  +N+LIATGS     PG+  D E ++SS  ALSL+                 
Sbjct: 135  TGENEMIIPENLLIATGSRPVELPGLPFDGEYVISSDEALSLETLPKSLVIVGGGVIGLE 194

Query: 922  -GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN 980
              S+    G EVT +E  + I     D E++K+  R+L K G++   G KV G +   D 
Sbjct: 195  WASMLADFGVEVTVVEAADRILP-TEDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDG 253

Query: 981  ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVI 1040
              + +       +++ L  D +LV VGRRP T  +GLE   I+  E G + ++   QT  
Sbjct: 254  GVLIVAEHNG--EEKTLEADKVLVSVGRRPNTEGIGLENTDIDV-EGGFIQIDDFCQTKE 310

Query: 1041 PNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
             +I+AIGD I  P LAH A  EG +  E IAG K
Sbjct: 311  RHIYAIGDVIGEPQLAHVAMAEGEMAAEHIAGKK 344

Length = 472

>gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed

 Score =  158 bits (401), Expect = 3e-41
 Identities = 82/242 (33%), Positives = 124/242 (51%), Gaps = 19/242 (7%)

Query: 847  GIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVD 906
            G+  L K NK+T+++G+G  T  NT+ V  +DG TE V   N +IATGS     PG  + 
Sbjct: 97   GVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLLPGTSLS 156

Query: 907  ------EETIVSST----------GALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEV 950
                  EE I+S            GA+ ++   V    G +VT +EF++       D EV
Sbjct: 157  ENVVTYEEQILSRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNE-DAEV 215

Query: 951  AKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRP 1010
            +K+  +   K G++   GTKV     +G  +TVT+   K   K +EL  D +L  +G  P
Sbjct: 216  SKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVS--KKDGKAQELEADKVLQAIGFAP 273

Query: 1011 YTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGI 1070
                 GLE+ G+   ++G + ++   +T +P+I+AIGD      LAH AE +G+V  E I
Sbjct: 274  RVEGYGLEKTGVALTDRGAIAIDDYMRTNVPHIYAIGDVTAKLQLAHVAEAQGVVAAETI 333

Query: 1071 AG 1072
            AG
Sbjct: 334  AG 335

Length = 466

>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase; Provisional

 Score =  142 bits (360), Expect = 8e-36
 Identities = 67/247 (27%), Positives = 108/247 (43%), Gaps = 32/247 (12%)

Query: 848  IAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPF--PGIEV 905
                ++ N+V  + G  +   P+TV V   DG  E +    I+IATGS   P+  P ++ 
Sbjct: 100  RRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSR--PYRPPDVDF 157

Query: 906  DEETIVSSTGALSLKK--GS--VWGRLGAEVTAIEFMNAIGGMG---------------I 946
            D   I  S   LSL     S  +    GA V   E+ +    +G               +
Sbjct: 158  DHPRIYDSDSILSLDHLPRSLII---YGAGVIGCEYASIFAALGVKVTLINTRDRLLSFL 214

Query: 947  DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCV 1006
            D E++      L   G+  +   +V       D + V +++ K      ++  D LL   
Sbjct: 215  DDEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGK------KIKADCLLYAN 268

Query: 1007 GRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVC 1066
            GR   T  L LE  G+E D +G++ VN  +QT +P+I+A+GD I  P LA  + D+G + 
Sbjct: 269  GRTGNTDGLNLENAGLEADSRGQLKVNENYQTAVPHIYAVGDVIGFPSLASASMDQGRIA 328

Query: 1067 VEGIAGD 1073
             +   G+
Sbjct: 329  AQHAVGE 335

Length = 461

>gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated

 Score =  137 bits (346), Expect = 4e-34
 Identities = 77/269 (28%), Positives = 115/269 (42%), Gaps = 32/269 (11%)

Query: 821  AGDKGVKLNLET-------MMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVT 873
            A   G+ L   +       M   KS  V  L  GI +L K NK+  + G       + V 
Sbjct: 62   ANHFGITLPNGSISIDWKQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVR 121

Query: 874  VIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK------------ 921
            V +     E V  +  +IA GSE T  P    D + I++S  A+SL              
Sbjct: 122  V-EYGDKEEVVDAEQFIIAAGSEPTELPFAPFDGKWIINSKHAMSLPSIPSSLLIVGGGV 180

Query: 922  -----GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASK 976
                  S++ RLG +VT +E    +   G D ++A   +  L   G++   G  + G + 
Sbjct: 181  IGCEFASIYSRLGTKVTIVEMAPQLL-PGEDEDIAHILREKLENDGVKIFTGAALKGLNS 239

Query: 977  SGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRF 1036
                     E        +E++ + +LV VGR+P    L LE+ G++   KG + VN   
Sbjct: 240  --YKKQALFEY---EGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVNEHM 293

Query: 1037 QTVIPNIFAIGDCIHGPMLAHKAEDEGIV 1065
            QT +P+I+A GD I G  LAH A  EG  
Sbjct: 294  QTNVPHIYACGDVIGGIQLAHVAFHEGTT 322

Length = 458

>gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated

 Score =  134 bits (339), Expect = 4e-33
 Identities = 50/77 (64%), Positives = 60/77 (77%)

Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
           G+EYK GKFPF AN RA    + DGFVK++ D  TD++LGVH+IGP A ELI EAV+AME
Sbjct: 380 GVEYKAGKFPFMANGRALAMGEPDGFVKIIADAKTDEILGVHVIGPNASELIAEAVVAME 439

Query: 512 YGASCEDVARTCHAHPT 528
           + AS ED+AR CHAHPT
Sbjct: 440 FKASSEDIARICHAHPT 456

Length = 475

>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated

 Score =  132 bits (335), Expect = 1e-32
 Identities = 70/227 (30%), Positives = 107/227 (47%), Gaps = 27/227 (11%)

Query: 857  VTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSE--VTPFPGIE----VDEETI 910
            V    GH +   PNTV V    G  E ++ K I I TG+   + P PG++    +  ETI
Sbjct: 110  VDVFRGHARFESPNTVRV---GG--ETLRAKRIFINTGARAAIPPIPGLDEVGYLTNETI 164

Query: 911  VSST-----------GALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILG 959
             S             G + L+   ++ R G+EVT IE    +     D +VA   + IL 
Sbjct: 165  FSLDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLP-REDEDVAAAVREILE 223

Query: 960  KQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEE 1019
            ++G+  +L  +     + GD I V ++         E++   +LV VGR P T +LGLE 
Sbjct: 224  REGIDVRLNAECIRVERDGDGIAVGLDC---NGGAPEITGSHILVAVGRVPNTDDLGLEA 280

Query: 1020 IGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEG-IV 1065
             G+E D +G + V+ + +T  P I+A GDC       H A ++  IV
Sbjct: 281  AGVETDARGYIKVDDQLRTTNPGIYAAGDCNGRGAFTHTAYNDARIV 327

Length = 463

>gnl|CDD|217252 pfam02852, Pyr_redox_dim, Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain

 Score =  120 bits (303), Expect = 5e-32
 Identities = 46/77 (59%), Positives = 56/77 (72%)

Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
           G E KVGKFPF AN RA    +T GFVK++ D  T ++LG HI+GP AGELI EA LA++
Sbjct: 25  GGEVKVGKFPFKANGRALAYGETKGFVKLVADAETGRILGAHIVGPNAGELIQEAALAIK 84

Query: 512 YGASCEDVARTCHAHPT 528
            GA+ ED+A T HAHPT
Sbjct: 85  MGATVEDLANTIHAHPT 101

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. Length = 110

>gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed

 Score =  128 bits (324), Expect = 2e-31
 Identities = 48/77 (62%), Positives = 60/77 (77%)

Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
           G  YKVGKFPF ANSRAK N++T+GF K+L D  TD+VLGVH++GP+  E+I E  +AME
Sbjct: 371 GRAYKVGKFPFTANSRAKINHETEGFAKILADARTDEVLGVHMVGPSVSEMIGEFCVAME 430

Query: 512 YGASCEDVARTCHAHPT 528
           + AS ED+A TCH HPT
Sbjct: 431 FSASAEDIALTCHPHPT 447

Length = 466

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score =  123 bits (311), Expect = 4e-31
 Identities = 59/230 (25%), Positives = 91/230 (39%), Gaps = 34/230 (14%)

Query: 845  TGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVT--PFPG 902
              G+  L  +  V    G   +   +  T         E+    ++IATG+       PG
Sbjct: 68   EFGVEVLLGTEVVDIDRGEKTVVLKDVET-------GREITYDKLIIATGARPRIPGIPG 120

Query: 903  IEVDEE-TIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGM 944
            +EV     ++ S   L L +                  +   +LG EVT +E  + +   
Sbjct: 121  VEVATLRGVIDSDEILELLELPKRVVVVGGGYIGLELAAALAKLGKEVTVVERRDRLLAR 180

Query: 945  GIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLV 1004
              D E++      L K  +   +   V    K GD     +  VK     EEL  D +LV
Sbjct: 181  ADD-EISAALLEKLEKLLLGVTVLLVVVVVVKVGD---GKVVEVKL-GDGEELDADVVLV 235

Query: 1005 CVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPM 1054
             +GRRP T    LE+ G+E DE+G + V+   +T +P I+A GD   G  
Sbjct: 236  AIGRRPNT--ELLEQAGVELDERGYIVVDEYLRTSVPGIYAAGDVAEGKP 283

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase

 Score =  123 bits (311), Expect = 1e-29
 Identities = 45/78 (57%), Positives = 58/78 (74%)

Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
           G + K+GKFPFAAN +A    +TDGFVK++ DK T ++LG HIIGP A ELI+EA LAME
Sbjct: 366 GYDVKIGKFPFAANGKALALGETDGFVKIIADKKTGEILGAHIIGPHATELISEAALAME 425

Query: 512 YGASCEDVARTCHAHPTV 529
              + E++ART H HPT+
Sbjct: 426 LEGTVEELARTIHPHPTL 443

This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 460

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score =  121 bits (305), Expect = 6e-29
 Identities = 51/79 (64%), Positives = 62/79 (78%)

Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
           GI+YKVGKFPFAAN RA T  +TDGFVK++ DK T ++LG HI+GP A ELINE  LA+E
Sbjct: 369 GIDYKVGKFPFAANGRAITMGETDGFVKLVVDKETGRILGAHIVGPGASELINEIALAIE 428

Query: 512 YGASCEDVARTCHAHPTVC 530
            GA+ ED+A T HAHPT+ 
Sbjct: 429 MGATAEDLALTIHAHPTLS 447

Length = 454

>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated

 Score =  119 bits (301), Expect = 2e-28
 Identities = 38/78 (48%), Positives = 48/78 (61%)

Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
           GI+Y VG+ PF A  RA+     DGFVKV  DK T ++LG HIIGP A  LI+    AM+
Sbjct: 365 GIDYVVGEVPFEAQGRARVMGKNDGFVKVYADKKTGRLLGAHIIGPDAEHLIHLLAWAMQ 424

Query: 512 YGASCEDVARTCHAHPTV 529
            G + ED+ R    HPT+
Sbjct: 425 QGLTVEDLLRMPFYHPTL 442

Length = 460

>gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase

 Score =  120 bits (302), Expect = 2e-28
 Identities = 79/245 (32%), Positives = 110/245 (44%), Gaps = 34/245 (13%)

Query: 825  GVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEV 884
             V  N + ++  K+  +  L G    L  +  V    G GKI GPN V V + DG+    
Sbjct: 107  KVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRY 166

Query: 885  KTKNILIATGSEVTP--FPGIEVDEETIVSSTGALSL----KKGSVWGRLGAEVTAIEFM 938
              K+ILIATGS       PG    +E  ++S  ALSL    K+  V   LG    A+EF 
Sbjct: 167  TAKHILIATGSRAQRPNIPG----KELAITSDEALSLEELPKRAVV---LGGGYIAVEFA 219

Query: 939  NAIGGMG---------------IDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITV 983
            +   GMG                D E+     R L  +G+     T +T  +K+   I V
Sbjct: 220  SIWRGMGATVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKV 279

Query: 984  TIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNI 1043
              ++       EE   D +L   GR P T  L LE +G+E D+ G V V+   +T IP+I
Sbjct: 280  ITDH------GEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSRTNIPSI 333

Query: 1044 FAIGD 1048
            +AIGD
Sbjct: 334  WAIGD 338

Length = 499

>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated

 Score =  117 bits (297), Expect = 7e-28
 Identities = 67/249 (26%), Positives = 111/249 (44%), Gaps = 36/249 (14%)

Query: 827  KLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKT 886
            K +   ++  + A +  L G   +  ++N V  + G  +    +TV V   +G  E    
Sbjct: 78   KFDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEV---NG--ERYTA 132

Query: 887  KNILIATGSEVTPFPGIEVDEETIVSSTGALSL----KKGSVWGRLGAEVTAIEF---MN 939
             +ILIATG   +  P I   E  I +S G  +L    K+ +V G   A   A+EF   +N
Sbjct: 133  DHILIATGGRPSI-PDIPGAEYGI-TSDGFFALEELPKRVAVVG---AGYIAVEFAGVLN 187

Query: 940  AIGG------------MGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIE 986
             +G              G D ++ +     + K+G++           K+ D  +T+T+E
Sbjct: 188  GLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLE 247

Query: 987  NVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAI 1046
            +       E L+ D L+  +GR P T  LGLE  G++ +EKG + V+    T +P I+A+
Sbjct: 248  D------GETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGIYAV 301

Query: 1047 GDCIHGPML 1055
            GD      L
Sbjct: 302  GDVTGRVEL 310

Length = 450

>gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed

 Score =  118 bits (297), Expect = 8e-28
 Identities = 39/78 (50%), Positives = 52/78 (66%)

Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
           GIEY+   FP+AA+ RA  ++  DG  K++ DK T +VLG  I+G  AGEL+ E  LA+E
Sbjct: 370 GIEYETATFPWAASGRAIASDCADGMTKLIFDKETHRVLGGAIVGTNAGELLGEIGLAIE 429

Query: 512 YGASCEDVARTCHAHPTV 529
            G   ED+A T HAHPT+
Sbjct: 430 MGCDAEDIALTIHAHPTL 447

Length = 471

>gnl|CDD|233700 TIGR02053, MerA, mercuric reductase

 Score =  116 bits (292), Expect = 3e-27
 Identities = 78/277 (28%), Positives = 121/277 (43%), Gaps = 25/277 (9%)

Query: 810  NYHLATKLFTQAGDKGVKLNLETMMGTKSAAVKAL-TGGIAHLFKSNKVTQLNGHGKITG 868
              H A K         V ++   ++  K   V+ L       +  S  V  L G  +   
Sbjct: 55   VAHYARKPPFGGLAATVAVDFGELLEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKD 114

Query: 869  PNTVTVIKSDGSTEEVKTKNILIATGSE--VTPFPGI-EVD---------EETIVSS--- 913
            P TV V   D   E    K  LIATG+   + P PG+ E            + I  S   
Sbjct: 115  PKTVKV---DLGREVRGAKRFLIATGARPAIPPIPGLKEAGYLTSEEALALDRIPESLAV 171

Query: 914  --TGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKV 971
               GA+ ++    + RLG+EVT ++  + +     + E++   +  L ++G++     +V
Sbjct: 172  IGGGAIGVELAQAFARLGSEVTILQRSDRLL-PREEPEISAAVEEALAEEGIEVVTSAQV 230

Query: 972  TGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVP 1031
               S  G    +T+E    P  + E+  D LLV  GRRP T  LGLE+ G++ DE+G + 
Sbjct: 231  KAVSVRGGGKIITVEK---PGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGIL 287

Query: 1032 VNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVE 1068
            V+   +T  P I+A GD   G  L + A  EG+V  E
Sbjct: 288  VDETLRTSNPGIYAAGDVTGGLQLEYVAAKEGVVAAE 324

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH [Cellular processes, Detoxification]. Length = 463

>gnl|CDD|173442 PTZ00153, PTZ00153, lipoamide dehydrogenase; Provisional

 Score =  115 bits (289), Expect = 3e-26
 Identities = 83/287 (28%), Positives = 134/287 (46%), Gaps = 43/287 (14%)

Query: 826  VKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTV----IKSDGST 881
            V++++  +     + +  L GGI +  KS K  + + H ++       V    IKS+ S 
Sbjct: 211  VQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSEKSG 270

Query: 882  EEVKTKNILIATGSEVTPF--PGIEVDEETIVSSTGALSLKK-GSVWGRLGAEVTAIEFM 938
            +E K KNI+IATGS  TP     IEVD++++ +S  A+ L+   +  G +G  +  +EFM
Sbjct: 271  KEFKVKNIIIATGS--TPNIPDNIEVDQKSVFTSDTAVKLEGLQNYMGIVGMGIIGLEFM 328

Query: 939  NAIGGMG---------------IDGEVAKQFQRILGK-QGMQFKLGTKVTGASKSGDNIT 982
            +    +G               +D +VAK F+R+  K + ++  L T +        N  
Sbjct: 329  DIYTALGSEVVSFEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQP 388

Query: 983  VTIE-----------NVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVP 1031
            V I              K+    +E   D+ LV  GR+P T+NLGL+++ I+   +G V 
Sbjct: 389  VIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMK-RGFVS 447

Query: 1032 VNSRFQT------VIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072
            V+   +       V  NIF IGD     MLAH A  + +  V+ I G
Sbjct: 448  VDEHLRVLREDQEVYDNIFCIGDANGKQMLAHTASHQALKVVDWIEG 494

Length = 659

>gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase; Provisional

 Score =  112 bits (282), Expect = 4e-26
 Identities = 75/279 (26%), Positives = 118/279 (42%), Gaps = 31/279 (11%)

Query: 815  TKLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTV 874
            TK    A +K   L+ E +M TK+     L G    +   + V   +          + V
Sbjct: 51   TKTLLVAAEKN--LSFEQVMATKNTVTSRLRGKNYAMLAGSGVDLYDAEAHFVSNKVIEV 108

Query: 875  IKSDGSTEEVKTKNILIATG--SEVTPFPGIEVDEETIVSSTGALSLKK----------- 921
               D    E+  + I+I TG  S V P PG+  D + +  STG  SL+            
Sbjct: 109  QAGDEK-IELTAETIVINTGAVSNVLPIPGLA-DSKHVYDSTGIQSLETLPERLGIIGGG 166

Query: 922  ------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGAS 975
                    ++ +LG++VT ++  + I     +  VA   ++ + + G+ F L    T   
Sbjct: 167  NIGLEFAGLYNKLGSKVTVLDAASTILPR-EEPSVAALAKQYMEEDGITFLLNAHTTEVK 225

Query: 976  KSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSR 1035
              GD + V  E+       E    DALL   GR+P T  LGLE   IE  E+G + V+  
Sbjct: 226  NDGDQVLVVTED-------ETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDY 278

Query: 1036 FQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
             QT +P +FA+GD   GP   + + D+  +    + GD 
Sbjct: 279  CQTSVPGVFAVGDVNGGPQFTYISLDDFRIVFGYLTGDG 317

Length = 438

>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed

 Score =  110 bits (277), Expect = 3e-25
 Identities = 40/77 (51%), Positives = 52/77 (67%)

Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
           G + KV KFPFA N +A    +TDGFVK++ DK   +VLG H++G  A ELI EA LA+ 
Sbjct: 367 GFDVKVVKFPFAGNGKALALGETDGFVKLIFDKKDGEVLGAHMVGARASELIQEAQLAIN 426

Query: 512 YGASCEDVARTCHAHPT 528
           + A+ ED+A T H HPT
Sbjct: 427 WEATPEDLALTIHPHPT 443

Length = 462

>gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated

 Score =  107 bits (269), Expect = 3e-24
 Identities = 42/77 (54%), Positives = 53/77 (68%)

Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
           G + KVGKFPFAAN +A T  ++DGFVKV+ D+ T  +LGV  +GP   ELI+E  LA+E
Sbjct: 377 GYDVKVGKFPFAANGKALTYGESDGFVKVVADRDTHDILGVQAVGPHVTELISEFALALE 436

Query: 512 YGASCEDVARTCHAHPT 528
            GA   +VA T H HPT
Sbjct: 437 LGARLWEVAGTIHPHPT 453

Length = 472

>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase

 Score =  104 bits (262), Expect = 2e-23
 Identities = 40/82 (48%), Positives = 53/82 (64%), Gaps = 5/82 (6%)

Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYH-MAHSGDMKARGIEVEGVKLNLETMMG 586
              VEK + LGGTCLNVGCIP+KALL+++  Y  + H+ D+   GIEVE V ++ E M  
Sbjct: 27  VALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDL---GIEVENVSVDWEKMQK 82

Query: 587 TKSAAVKALTGGIAHLFKSNKA 608
            K+  VK L GG++ L K NK 
Sbjct: 83  RKNKVVKKLVGGVSGLLKKNKV 104

This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 460

>gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed

 Score =  103 bits (260), Expect = 4e-23
 Identities = 37/80 (46%), Positives = 47/80 (58%), Gaps = 2/80 (2%)

Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGT 587
           TVCVE+  TLGG CLNVGCIPSKALL+ +     A    +   GI     K++++ M   
Sbjct: 30  TVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAK--ALAEHGIVFGEPKIDIDKMRAR 87

Query: 588 KSAAVKALTGGIAHLFKSNK 607
           K   VK LTGG+A + K  K
Sbjct: 88  KEKVVKQLTGGLAGMAKGRK 107

Length = 471

>gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated

 Score =  101 bits (254), Expect = 2e-22
 Identities = 40/86 (46%), Positives = 49/86 (56%), Gaps = 7/86 (8%)

Query: 528 TVCVEKNDT------LGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNL 581
             C+E          LGGTCLNVGCIPSKALL +S  +  A        GI V+GVK+++
Sbjct: 30  VACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGH-HFADHGIHVDGVKIDV 88

Query: 582 ETMMGTKSAAVKALTGGIAHLFKSNK 607
             M+  K   VK +TGGI  LFK NK
Sbjct: 89  AKMIARKDKVVKKMTGGIEGLFKKNK 114

Length = 475

>gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase selenoprotein

 Score = 96.5 bits (240), Expect = 1e-20
 Identities = 57/249 (22%), Positives = 105/249 (42%), Gaps = 24/249 (9%)

Query: 822  GDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGST 881
             ++ VK + + ++      + +L  G     +  KV   N + +    + +      G  
Sbjct: 80   VEETVKHDWKRLVEAVQNHIGSLNWGYRVALREKKVKYENAYAEFVDKHRIKATNKKGKE 139

Query: 882  EEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKKGSVWGR---LGAEVTAIE-- 936
            +    +  LIATG E   +PGI   +E  ++S    SL      G+   +GA   A+E  
Sbjct: 140  KIYSAERFLIATG-ERPRYPGIPGAKELCITSDDLFSLPY--CPGKTLVVGASYVALECA 196

Query: 937  -FMNAIGG-----------MGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVT 984
             F+  IG             G D + A +    + + G++FK         +    + V 
Sbjct: 197  GFLAGIGLDVTVMVRSILLRGFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVLVE 256

Query: 985  IENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEK-GRVPVNSRFQTVIPNI 1043
              +      +EE   D +L+ +GR   T  L LE +G++ ++K G++P +   QT +P I
Sbjct: 257  FTD-STNGIEEEY--DTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQTNVPYI 313

Query: 1044 FAIGDCIHG 1052
            +A+GD +  
Sbjct: 314  YAVGDILED 322

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. Length = 484

>gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant

 Score = 95.6 bits (238), Expect = 1e-20
 Identities = 56/238 (23%), Positives = 104/238 (43%), Gaps = 24/238 (10%)

Query: 826  VKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVK 885
             + + + ++  K   +  L+G       +     L+G  ++ GPNTV V+ S  +     
Sbjct: 74   ARFDWKKLLAAKDQEIARLSGLYRKGLANAGAELLDGRAELVGPNTVEVLASGKT---YT 130

Query: 886  TKNILIATGSE-VTP-FPGIEV-------------DEETIVSSTGALSLKKGSVWGRLGA 930
             + ILIA G     P  PG E+              +  +++  G ++++   ++  LG 
Sbjct: 131  AEKILIAVGGRPPKPALPGHELGITSNEAFHLPTLPKSILIAGGGYIAVEFAGIFRGLGV 190

Query: 931  EVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKD 990
            + T I +       G D ++ +     L ++G++      +T  SK  D           
Sbjct: 191  QTTLI-YRGKEILRGFDDDMRRGLAAALEERGIRILPEDSITSISKDDDGRLKATL---- 245

Query: 991  PTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGD 1048
             +K EE+  D +L   GR P T+ LGLE  G+  ++ G + V+   +T  P+I+A+GD
Sbjct: 246  -SKHEEIVADVVLFATGRSPNTNGLGLEAAGVRLNDLGAIAVDEYSRTSTPSIYAVGD 302

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria [Energy metabolism, Electron transport]. Length = 446

>gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed

 Score = 90.7 bits (225), Expect = 6e-19
 Identities = 43/80 (53%), Positives = 51/80 (63%), Gaps = 1/80 (1%)

Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGT 587
             CVE   TLGGTCLNVGC+PSKALL+ S  Y  A  G+    GIEV+   LNL  MM  
Sbjct: 29  VACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKP-TLNLAQMMKQ 87

Query: 588 KSAAVKALTGGIAHLFKSNK 607
           K  +V+ALT G+  LF+ NK
Sbjct: 88  KDESVEALTKGVEFLFRKNK 107

Length = 466

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score = 90.3 bits (225), Expect = 8e-19
 Identities = 36/80 (45%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGT 587
              VEK + LGGTCLNVGCIPSKALL+ +     A     K  GI  E  K++ E ++  
Sbjct: 30  VALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAA-KEYGISAEVPKIDFEKLLAR 88

Query: 588 KSAAVKALTGGIAHLFKSNK 607
           K   V+ LTGG+  L K N 
Sbjct: 89  KDKVVRLLTGGVEGLLKKNG 108

Length = 454

>gnl|CDD|237806 PRK14727, PRK14727, putative mercuric reductase; Provisional

 Score = 86.5 bits (214), Expect = 2e-17
 Identities = 67/276 (24%), Positives = 107/276 (38%), Gaps = 26/276 (9%)

Query: 806  AVQANYHLATKLFTQAGDKGVKLNLETMMGTKSAAVKAL-TGGIAHLFKSN-KVTQLNGH 863
            A Q  +   +  F         ++   ++  + A V+ L       +   N  +T L G+
Sbjct: 69   AAQLAHQQRSNPFDGVEAVAPSIDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGY 128

Query: 864  GKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIV-SSTGALSLKK- 921
             +    NT+ V   DG    +     LIATGS  T  P I    +T   +ST AL   + 
Sbjct: 129  ARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPT-IPPIPGLMDTPYWTSTEALFSDEL 187

Query: 922  GSVWGRLGAEVTAIEFMNAIGGMGI--------------DGEVAKQFQRILGKQGMQFKL 967
             +    +G+ V A E   A   +G               D  + +       K+G++   
Sbjct: 188  PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLFREDPLLGETLTACFEKEGIEVLN 247

Query: 968  GTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEK 1027
             T+ +      +   +T       T   EL  + LL+  GR   TH+L LE +G+  D  
Sbjct: 248  NTQASLVEHDDNGFVLT-------TGHGELRAEKLLISTGRHANTHDLNLEAVGVTTDTS 300

Query: 1028 GRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEG 1063
            G + VN   +T  P+I+A GDC   P   + A   G
Sbjct: 301  GAIVVNPAMETSAPDIYAAGDCSDLPQFVYVAAAAG 336

Length = 479

>gnl|CDD|215301 PLN02546, PLN02546, glutathione reductase

 Score = 86.5 bits (214), Expect = 2e-17
 Identities = 73/238 (30%), Positives = 109/238 (45%), Gaps = 38/238 (15%)

Query: 832  TMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILI 891
            T++  K+A ++ LTG   ++ K+  VT + G GKI  P+TV V   DG       +NILI
Sbjct: 168  TLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDV---DGKL--YTARNILI 222

Query: 892  ATGSEVTPF----PGIEVDEETIVSSTGALSL-KKGSVWGRLGAEVTAIEFMNAIGGM-- 944
            A G    PF    PGIE      + S  AL L  K      +G    A+EF     G+  
Sbjct: 223  AVGGR--PFIPDIPGIE----HAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFNGLKS 276

Query: 945  -------------GIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDP 991
                         G D EV       +  +G++F          KS D       ++K  
Sbjct: 277  DVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSL----SLK-- 330

Query: 992  TKKEELS-CDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGD 1048
            T K  +     ++   GR+P T NLGLEE+G++ D+ G + V+   +T +P+I+A+GD
Sbjct: 331  TNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRTSVPSIWAVGD 388

Length = 558

>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed

 Score = 83.8 bits (208), Expect = 9e-17
 Identities = 58/225 (25%), Positives = 95/225 (42%), Gaps = 33/225 (14%)

Query: 857  VTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGI------------- 903
            +    GH +  GP T+      G  EE+    ++IA GS     P I             
Sbjct: 104  IDVYRGHARFIGPKTLRT----GDGEEITADQVVIAAGSRPVIPPVIADSGVRYHTSDTI 159

Query: 904  ----EVDEETIVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGM--GIDGEVAKQFQRI 957
                E+ E  ++   G ++ +   V+  LG  VT +   N  G +   +D +++++F  +
Sbjct: 160  MRLPELPESLVIVGGGFIAAEFAHVFSALGVRVTVV---NRSGRLLRHLDDDISERFTEL 216

Query: 958  LGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGL 1017
              K+    +LG  V G S+ G  +T+ +++         +  D LLV  GR P    L  
Sbjct: 217  ASKR-WDVRLGRNVVGVSQDGSGVTLRLDD------GSTVEADVLLVATGRVPNGDLLDA 269

Query: 1018 EEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDE 1062
               G++ DE GRV V+   +T    +FA+GD      L H A  E
Sbjct: 270  AAAGVDVDEDGRVVVDEYQRTSAEGVFALGDVSSPYQLKHVANHE 314

Length = 451

>gnl|CDD|184298 PRK13748, PRK13748, putative mercuric reductase; Provisional

 Score = 84.4 bits (209), Expect = 9e-17
 Identities = 62/229 (27%), Positives = 96/229 (41%), Gaps = 44/229 (19%)

Query: 857  VTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSE--VTPFPGI----------- 903
            +T L+G  +     T+ V  +DG    V     LIATG+   V P PG+           
Sbjct: 204  ITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPGLKETPYWTSTEA 263

Query: 904  ----EVDEETIV--SSTGALSLKKGSVWGRLGAEVTAIE----FMN---AIGGMGIDGEV 950
                 + E   V  SS  AL L +   + RLG++VT +     F     AIG       V
Sbjct: 264  LVSDTIPERLAVIGSSVVALELAQA--FARLGSKVTILARSTLFFREDPAIGE-----AV 316

Query: 951  AKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRP 1010
               F+     +G++    T+ +  +       +T       T   EL  D LLV  GR P
Sbjct: 317  TAAFR----AEGIEVLEHTQASQVAHVDGEFVLT-------TGHGELRADKLLVATGRAP 365

Query: 1011 YTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKA 1059
             T +L L+  G+  + +G + ++   +T +P+I+A GDC   P   + A
Sbjct: 366  NTRSLALDAAGVTVNAQGAIVIDQGMRTSVPHIYAAGDCTDQPQFVYVA 414

Length = 561

>gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated

 Score = 83.8 bits (208), Expect = 1e-16
 Identities = 34/82 (41%), Positives = 43/82 (52%), Gaps = 5/82 (6%)

Query: 527 PTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMA-HSGDMKARGIEVEGVKLNLETMM 585
            T  VEK   LGGTCL+ GCIPSKALL+++  +  A  +      GI V G  L+   + 
Sbjct: 29  KTALVEK-GKLGGTCLHKGCIPSKALLHSAEVFQTAKKASPF---GISVSGPALDFAKVQ 84

Query: 586 GTKSAAVKALTGGIAHLFKSNK 607
             K   V  LT G+A L K  K
Sbjct: 85  ERKDGIVDRLTKGVAALLKKGK 106

Length = 472

>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed

 Score = 82.1 bits (204), Expect = 3e-16
 Identities = 36/81 (44%), Positives = 46/81 (56%), Gaps = 5/81 (6%)

Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYH-MAHSGDMKARGIEVEGVKLNLETMMG 586
              VEK + LGGTCLN GCIPSKALL+ +       HS D    GI+ E V ++ + +  
Sbjct: 30  VAIVEK-EKLGGTCLNRGCIPSKALLHAAERADEARHSEDF---GIKAENVGIDFKKVQE 85

Query: 587 TKSAAVKALTGGIAHLFKSNK 607
            K+  V  LTGG+  L K NK
Sbjct: 86  WKNGVVNRLTGGVEGLLKKNK 106

Length = 462

>gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed

 Score = 82.4 bits (204), Expect = 3e-16
 Identities = 34/77 (44%), Positives = 47/77 (61%)

Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
           G + KV KFPF AN +A    D  GFVK++ D    ++LG H+IGP   EL+ E  LA +
Sbjct: 371 GYDVKVAKFPFTANGKAHGLGDPTGFVKLVADAKYGELLGGHLIGPDVSELLPELTLAQK 430

Query: 512 YGASCEDVARTCHAHPT 528
           +  + E++AR  H HPT
Sbjct: 431 WDLTAEELARNVHTHPT 447

Length = 466

>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated

 Score = 82.2 bits (204), Expect = 4e-16
 Identities = 31/78 (39%), Positives = 42/78 (53%)

Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
           G    VG  P     RA    +T GF+KV+ D  TD++LG  I+G    E+I+E + AM 
Sbjct: 368 GRRVLVGTRPMTRVGRAVEKGETQGFMKVVVDADTDRILGATILGVHGDEMIHEILDAMY 427

Query: 512 YGASCEDVARTCHAHPTV 529
            GA    ++R  H HPTV
Sbjct: 428 AGAPYTTLSRAIHIHPTV 445

Length = 463

>gnl|CDD|236112 PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed

 Score = 78.7 bits (195), Expect = 4e-15
 Identities = 63/219 (28%), Positives = 98/219 (44%), Gaps = 38/219 (17%)

Query: 857  VTQLNGHGKIT----GPNTVTVIKSDGSTEEVKTKNILIATGSEVTP--FPGIEVDEETI 910
            V  + G G++     GP+ V V  +DG  E +    +LIATG+  +P   P  E D E I
Sbjct: 107  VRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGA--SPRILPTAEPDGERI 164

Query: 911  VSSTGALSLKKGSVWGRL---GAEVTAIEFMNAIGGMGI---------------DGEVAK 952
            ++      L +  +   L   G+ VT  EF +A   +G+               D + A+
Sbjct: 165  LTWRQLYDLDE--LPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAE 222

Query: 953  QFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYT 1012
              + +  ++GM     ++     ++GD + VT+    D    E       L+ VG  P T
Sbjct: 223  VLEEVFARRGMTVLKRSRAESVERTGDGVVVTLT---DGRTVEGSHA---LMAVGSVPNT 276

Query: 1013 HNLGLEEIGIEKDEKGRVPVN--SRFQTVIPNIFAIGDC 1049
              LGLEE G+E    G + V+  SR  T +P I+A GDC
Sbjct: 277  AGLGLEEAGVELTPSGHITVDRVSR--TSVPGIYAAGDC 313

Length = 466

>gnl|CDD|237790 PRK14694, PRK14694, putative mercuric reductase; Provisional

 Score = 77.7 bits (191), Expect = 1e-14
 Identities = 64/226 (28%), Positives = 95/226 (42%), Gaps = 31/226 (13%)

Query: 857  VTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVDEETIVSST 914
            +T LNG  +     T+TV  +DG  + V      I TG+     P PG+   E   ++ST
Sbjct: 112  ITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPPVPGLA--ETPYLTST 169

Query: 915  GALSLKKGSVWGRL---GAEVTAIEFMNAIGGMGI--------------DGEVAKQFQRI 957
             AL L    +  RL   GA V A+E   A   +G               D  V +  +  
Sbjct: 170  SALELD--HIPERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQEDPAVGEAIEAA 227

Query: 958  LGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGL 1017
              ++G++    T+ +    +G    +        T    L  + LLV  GR P T NL L
Sbjct: 228  FRREGIEVLKQTQASEVDYNGREFILE-------TNAGTLRAEQLLVATGRTPNTENLNL 280

Query: 1018 EEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEG 1063
            E IG+E  E+G + ++   QT +  I+A GDC   P   + A   G
Sbjct: 281  ESIGVET-ERGAIRIDEHLQTTVSGIYAAGDCTDQPQFVYVAAAGG 325

Length = 468

>gnl|CDD|181196 PRK08010, PRK08010, pyridine nucleotide-disulfide oxidoreductase; Provisional

 Score = 77.4 bits (190), Expect = 1e-14
 Identities = 65/259 (25%), Positives = 111/259 (42%), Gaps = 28/259 (10%)

Query: 834  MGTKSAAVKALTGGIAH-LFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIA 892
            +  K+  V  L     H L     +  ++G  +    +++ V + +G+ E +  + I I 
Sbjct: 68   IQRKNEVVNFLRNKNFHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLE-IHGEKIFIN 126

Query: 893  TGSE--VTPFPGIEVDEETIVSSTGALSLKK-GSVWGRLGAEVTAIEFMNAIGGMGI--- 946
            TG++  V P PGI      +  STG L+LK+     G LG     +EF +     G    
Sbjct: 127  TGAQTVVPPIPGITT-TPGVYDSTGLLNLKELPGHLGILGGGYIGVEFASMFANFGSKVT 185

Query: 947  ------------DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKK 994
                        D ++A     IL  QG+   L   V   S   + + V        ++ 
Sbjct: 186  ILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERISHHENQVQVH-------SEH 238

Query: 995  EELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPM 1054
             +L+ DALL+  GR+P T +L  E  GI  +E+G + V+    T   NI+A+GD   G  
Sbjct: 239  AQLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDVTGGLQ 298

Query: 1055 LAHKAEDEGIVCVEGIAGD 1073
              + + D+  +  + + G+
Sbjct: 299  FTYISLDDYRIVRDELLGE 317

Length = 441

>gnl|CDD|233700 TIGR02053, MerA, mercuric reductase

 Score = 77.1 bits (190), Expect = 2e-14
 Identities = 33/78 (42%), Positives = 46/78 (58%)

Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
           GIE      P     RA+ N DT GF+K++ +  T KVLGV ++ P A E+INEA LA+ 
Sbjct: 363 GIECDCRTLPLTNVPRARINRDTRGFIKLVAEPGTGKVLGVQVVAPEAAEVINEAALAIR 422

Query: 512 YGASCEDVARTCHAHPTV 529
            G + +D+  T H  PT+
Sbjct: 423 AGMTVDDLIDTLHPFPTM 440

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH [Cellular processes, Detoxification]. Length = 463

>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated

 Score = 76.0 bits (188), Expect = 3e-14
 Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 3/85 (3%)

Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGT 587
              +EK   LGGTCLNVGCIPSKAL+  +  +H A   +    GI  +G K++ + +M  
Sbjct: 29  VALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAE--EFGIHADGPKIDFKKVMAR 85

Query: 588 KSAAVKALTGGIAHLFKSNKALKII 612
                    GG+    +    +  I
Sbjct: 86  VRRERDRFVGGVVEGLEKKPKIDKI 110

Length = 460

>gnl|CDD|200098 TIGR01423, trypano_reduc, trypanothione-disulfide reductase

 Score = 76.2 bits (187), Expect = 3e-14
 Identities = 74/274 (27%), Positives = 116/274 (42%), Gaps = 33/274 (12%)

Query: 826  VKLNLETMMGTKSAAVKALTGGIAHLFKSNK-VTQLNGHGKITGPNTVTVIKSDGSTEEV 884
            VK N + ++  K+ AV  +      +F   + +T   G G +   N V V +S      V
Sbjct: 87   VKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAV 146

Query: 885  K----TKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKKGSVWG-RLGAEVTAIEFM- 938
            K     ++IL+ATGS      GI   E  I SS  A  L +       +G    ++EF  
Sbjct: 147  KERLQAEHILLATGSW-PQMLGIPGIEHCI-SSNEAFYLDEPPRRVLTVGGGFISVEFAG 204

Query: 939  -----NAIGGM------------GIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNI 981
                    GG             G D  + K+  + L   G+           + + D  
Sbjct: 205  IFNAYKPRGGKVTLCYRNNMILRGFDSTLRKELTKQLRANGINIMTNENPAKVTLNADGS 264

Query: 982  T-VTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVI 1040
              VT E+ K       L  D +++ +GR P T  L L+++G+E  +KG + V+   +T +
Sbjct: 265  KHVTFESGK------TLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSRTNV 318

Query: 1041 PNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
            PNI+AIGD     ML   A +EG   V+ + G+K
Sbjct: 319  PNIYAIGDVTDRVMLTPVAINEGAAFVDTVFGNK 352

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. Length = 486

>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase, animal/bacterial

 Score = 76.0 bits (187), Expect = 3e-14
 Identities = 63/243 (25%), Positives = 105/243 (43%), Gaps = 32/243 (13%)

Query: 827  KLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKT 886
              N   +   + A V  L G      + NKV  + GH + T   TV V     +  +   
Sbjct: 76   TFNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEV-----NGRDYTA 130

Query: 887  KNILIATGSEVTPFPGIEVDEETIVSSTGALSLK---KGSVWGRLGAEVTAIEFMNAIGG 943
             +ILIATG + +    I    E    S G  +L+   K  V   +GA   A+E    + G
Sbjct: 131  PHILIATGGKPSFPENIP-GAELGTDSDGFFALEELPKRVVI--VGAGYIAVELAGVLHG 187

Query: 944  MGIDGEVAKQFQRIL---------------GKQGMQFKLGTKVTGASKSGDN-ITVTIEN 987
            +G +  +  + +R+L                K+G+     +K     K+ +  + +  E+
Sbjct: 188  LGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFED 247

Query: 988  VKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIG 1047
             K          D L+  +GR+P T  LGLE +GI+ +EKG++ V+    T +P I+A+G
Sbjct: 248  GK-----SIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGIYALG 302

Query: 1048 DCI 1050
            D +
Sbjct: 303  DVV 305

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria [Energy metabolism, Electron transport]. Length = 450

>gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase

 Score = 74.4 bits (183), Expect = 1e-13
 Identities = 59/227 (25%), Positives = 95/227 (41%), Gaps = 37/227 (16%)

Query: 857  VTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGI------------- 903
            +   +GH +  GP T+      G  EE+    I+IA GS     P I             
Sbjct: 107  IDVYDGHARFVGPRTLRT----GDGEEITGDQIVIAAGSRPYIPPAIADSGVRYHTNEDI 162

Query: 904  ----EVDEETIVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGI----DGEVAKQFQ 955
                E+ E  ++   G ++ +   V+  LG  VT +          +    D +++ +F 
Sbjct: 163  MRLPELPESLVIVGGGYIAAEFAHVFSALGTRVTIV-----NRSTKLLRHLDEDISDRFT 217

Query: 956  RILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNL 1015
             I  K+    +LG  VT   + GD +T+T+++         ++ D LLV  GR P    L
Sbjct: 218  EIAKKK-WDIRLGRNVTAVEQDGDGVTLTLDDGST------VTADVLLVATGRVPNGDLL 270

Query: 1016 GLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDE 1062
              E  G+E DE GR+ V+   +T    ++A+GD      L H A  E
Sbjct: 271  DAEAAGVEVDEDGRIKVDEYGRTSARGVWALGDVSSPYQLKHVANAE 317

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. Length = 452

>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional

 Score = 73.9 bits (181), Expect = 2e-13
 Identities = 60/214 (28%), Positives = 107/214 (50%), Gaps = 26/214 (12%)

Query: 856  KVTQLNGHGKITGPNTVTVIKSDGSTEE----VKTKNILIATGSEVTPFPGIEVDEETIV 911
            KV+Q++G    +  + VT++ +  S  +    ++ KNILIA G++   FP ++  E TI 
Sbjct: 169  KVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGKNILIAVGNK-PIFPDVKGKEFTI- 226

Query: 912  SSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGK--QGMQFKLGT 969
            SS     +K+    G  G+   A+E +N +  +G +  +  +  R+L K  + +  +L  
Sbjct: 227  SSDDFFKIKEAKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRKFDETIINELEN 286

Query: 970  KVTGASKSGDNITVTIENVKDPTKKEE-------------LSCDALLVCVGRRPYTHNLG 1016
             +    K+  NI +T  NV++  K +E                D ++ CVGR P T +L 
Sbjct: 287  DM---KKNNINI-ITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLN 342

Query: 1017 LEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCI 1050
            L+ + I K  KG + V+   +T + +I+A+GDC 
Sbjct: 343  LKALNI-KTPKGYIKVDDNQRTSVKHIYAVGDCC 375

Length = 561

>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

 Score = 71.9 bits (176), Expect = 5e-13
 Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 7/149 (4%)

Query: 924  VWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITV 983
               + G +VT IE  + +GG  +D EVA++   +L K G++  LGTKV G    G+ + V
Sbjct: 154  AAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVV 213

Query: 984  TIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQT-VIPN 1042
                       EE+  D +++  G RP    L  + +       G V V+ R  T   P+
Sbjct: 214  ERVVG---IDGEEIKADLVIIGPGERPNVV-LANDALPGLALAGGAVLVDERGGTSKDPD 269

Query: 1043 IFAIGDCIHGPMLAHKAEDEGIVCVEGIA 1071
            ++A GD     + A +    G + +  IA
Sbjct: 270  VYAAGDV--AEIPAAETGKGGRIALWAIA 296

Length = 415

>gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional

 Score = 71.4 bits (175), Expect = 1e-12
 Identities = 64/231 (27%), Positives = 100/231 (43%), Gaps = 28/231 (12%)

Query: 853  KSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVS 912
            +S+KV  +NG  K+   +TV+    +   E +  K ILIATG   +    +   +E  ++
Sbjct: 113  RSSKVEYINGLAKLKDEHTVS-YGDNSQEETITAKYILIATGGRPSIPEDVPGAKEYSIT 171

Query: 913  STGALSLKKGSVWGR---LGAEVTAIE---FMNAIGG-----------MGIDGEVAKQFQ 955
            S    SL K    G+   +GA    +E   F+N +G             G D + +++  
Sbjct: 172  SDDIFSLSKDP--GKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLRGFDRQCSEKVV 229

Query: 956  RILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNL 1015
              + +QG  F  G       K  D I V   +        EL  D +L   GR+P    L
Sbjct: 230  EYMKEQGTLFLEGVVPINIEKMDDKIKVLFSD-----GTTELF-DTVLYATGRKPDIKGL 283

Query: 1016 GLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHG-PMLAHKAEDEGIV 1065
             L  IG+  ++  ++ +     T IPNIFA+GD + G P L   A   GI+
Sbjct: 284  NLNAIGVHVNKSNKI-IAPNDCTNIPNIFAVGDVVEGRPELTPVAIKAGIL 333

Length = 499

>gnl|CDD|179902 PRK04965, PRK04965, NADH:flavorubredoxin oxidoreductase; Provisional

 Score = 65.3 bits (160), Expect = 6e-11
 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 14/111 (12%)

Query: 949  EVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGR 1008
            EV+ + Q  L + G+   L +++ G  K+   I  T+           +  DA++   G 
Sbjct: 184  EVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATL------DSGRSIEVDAVIAAAGL 237

Query: 1009 RPYTHNLGL-EEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDC--IHGPMLA 1056
            RP   N  L    G+    +G V V+S  QT  P+I+A+GDC  I+G +L 
Sbjct: 238  RP---NTALARRAGLAV-NRGIV-VDSYLQTSAPDIYALGDCAEINGQVLP 283

Length = 377

>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

 Score = 62.3 bits (152), Expect = 3e-10
 Identities = 43/202 (21%), Positives = 71/202 (35%), Gaps = 47/202 (23%)

Query: 879  GSTEEVKTKNILIATGSE----------------VTPFP---GIEVDEETIVSSTG---- 915
                  + K ++IATG+                 V+      G    ++ +V   G    
Sbjct: 97   TDKGTYEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDGFFKGKDVVVIGGGDSAV 156

Query: 916  --ALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGK-QGMQFKLGTKVT 972
              AL L K      +  +VT +           +    +     L K   ++    T V 
Sbjct: 157  EEALYLSK------IAKKVTLV-------HRRDEFRAEEILVERLKKNVKIEVLTNTVVK 203

Query: 973  GASKSGDNIT-VTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVP 1031
                 GD++  V ++NVK   K  EL  D + + +G   +  N  L +     DE G + 
Sbjct: 204  --EILGDDVEGVVLKNVKGEEK--ELPVDGVFIAIG---HLPNTELLKGLGVLDENGYIV 256

Query: 1032 VNSRFQTVIPNIFAIGDCIHGP 1053
            V+   +T +P IFA GD     
Sbjct: 257  VDEEMETSVPGIFAAGDVADKN 278

Length = 305

>gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated

 Score = 62.8 bits (153), Expect = 6e-10
 Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 7/80 (8%)

Query: 537 LGGTCLNVGCIPSKALLNNSHYY-HMAHSGDMKARGIEV--EGVKLNLETMMGTKSAAVK 593
           LGGTCLN GC+P+K+LL ++  +  +  +      GI +    + ++ + M   KS  V 
Sbjct: 34  LGGTCLNEGCMPTKSLLESAEVHDKVKKANHF---GITLPNGSISIDWKQMQARKSQIVT 90

Query: 594 ALTGGIAHLFKSNKALKIIT 613
            L  GI +L K NK +K+I 
Sbjct: 91  QLVQGIQYLMKKNK-IKVIQ 109

Length = 458

>gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta; Provisional

 Score = 59.2 bits (144), Expect = 5e-09
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 10/111 (9%)

Query: 956  RILGK---QGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYT 1012
            RI+G+   +G++     ++    +SG    V I     P  +  L  D ++  +G  P T
Sbjct: 235  RIIGEGRVEGVEL-AKMRLGEPDESGRPRPVPI-----PGSEFVLEADTVVFAIGEIP-T 287

Query: 1013 HNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEG 1063
                 E +GIE + KG + V+ +  T    +FA GD + GP    KA   G
Sbjct: 288  PPFAKECLGIELNRKGEIVVDEKHMTSREGVFAAGDVVTGPSKIGKAIKSG 338

Length = 352

>gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion]

 Score = 60.4 bits (147), Expect = 5e-09
 Identities = 56/226 (24%), Positives = 88/226 (38%), Gaps = 48/226 (21%)

Query: 851  LFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSE--VTPFPGIEV--- 905
            L+   KV Q++            V    G    V    ++IATGS   + P PG ++   
Sbjct: 76   LYTGEKVIQID-------RANKVVTTDAG--RTVSYDKLIIATGSYPFILPIPGSDLPGV 126

Query: 906  -------DEETIVSSTGALSLKKGSVWG-------------RLGAEVTAIEFMNAIGGMG 945
                   D E ++    A + KK  V G              LG EVT +     +    
Sbjct: 127  FVYRTIDDVEAMLD--CARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQ 184

Query: 946  IDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVC 1005
            +D    +  +R L   G++  L          G++    +    D T   E+  D +++ 
Sbjct: 185  LDRTAGRLLRRKLEDLGIKVLLEKNTE--EIVGEDKVEGVR-FADGT---EIPADLVVMA 238

Query: 1006 VGRRPYTHNLGL-EEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCI 1050
            VG RP   N  L +E G+    +G V VN   QT  P+I+A+G+C 
Sbjct: 239  VGIRP---NDELAKEAGL-AVNRGIV-VNDYMQTSDPDIYAVGECA 279

Length = 793

>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

 Score = 59.2 bits (144), Expect = 6e-09
 Identities = 43/155 (27%), Positives = 62/155 (40%), Gaps = 19/155 (12%)

Query: 926  GRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTI 985
                  V  +E    I  M    +++K  +R L K G++  LGT VT  +  G       
Sbjct: 188  DPSELRVILVEAGPRILPM-FPPKLSKYAERALEKLGVEVLLGTPVTEVTPDG------- 239

Query: 986  ENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTV-IPNIF 1044
              V     +EE+  D ++   G R     L  +  G+E D +GR+ VN   Q    P+IF
Sbjct: 240  --VTLKDGEEEIPADTVVWAAGVRA--SPLLKDLSGLETDRRGRLVVNPTLQVPGHPDIF 295

Query: 1045 AIGDC---IHG---PMLAHKAEDEGIVCVEGIAGD 1073
            A GDC   I     P  A  A  +G    + I   
Sbjct: 296  AAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKAR 330

Length = 405

>gnl|CDD|173442 PTZ00153, PTZ00153, lipoamide dehydrogenase; Provisional

 Score = 59.5 bits (144), Expect = 7e-09
 Identities = 25/60 (41%), Positives = 40/60 (66%)

Query: 470 TNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTV 529
           T ++T+G VK++  K T ++LG+ I+G  A  LI+E VLA+    S +D+A   H+HPT+
Sbjct: 583 TVDNTEGMVKIVYLKDTKEILGMFIVGSYASILIHEGVLAINLKLSVKDLAHMVHSHPTI 642

Length = 659

>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed

 Score = 58.8 bits (143), Expect = 9e-09
 Identities = 23/49 (46%), Positives = 32/49 (65%)

Query: 473 DTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVAR 521
           DT GFVK++ D+ T ++LG HIIGP A  LI   + AM +G    ++AR
Sbjct: 381 DTTGFVKLIADRDTGRLLGAHIIGPQASTLIQPLIQAMSFGLDAREMAR 429

Length = 451

>gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase

 Score = 56.7 bits (137), Expect = 4e-08
 Identities = 23/49 (46%), Positives = 31/49 (63%)

Query: 473 DTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVAR 521
           DT GF K++ D+ T K+LG HIIGP A  LI   + AM +G    ++AR
Sbjct: 384 DTTGFCKLIADRDTGKLLGAHIIGPQASSLIQPLITAMAFGLDAREMAR 432

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. Length = 452

>gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large subunit

 Score = 55.6 bits (134), Expect = 1e-07
 Identities = 53/218 (24%), Positives = 82/218 (37%), Gaps = 61/218 (27%)

Query: 873  TVIKSDGSTEEVKTK--------NILIATGSE--VTPFPG-----------IEVDEETIV 911
            TVI+ D   ++V T          +++ATGS   + P PG           IE D + I+
Sbjct: 76   TVIQIDTDQKQVITDAGRTLSYDKLILATGSYPFILPIPGADKKGVYVFRTIE-DLDAIM 134

Query: 912  SSTGALSLKKGSVWG-------------RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRIL 958
            +   A   KK +V G              LG +V+ I     +    +D    +  QR L
Sbjct: 135  A--MAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQREL 192

Query: 959  GKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKK-------EELSCDALLVCVGRRPY 1011
             ++G+ F L                T+E V               L  D +++  G RP 
Sbjct: 193  EQKGLTFLLEKD-------------TVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPN 239

Query: 1012 THNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDC 1049
               L +   GI       + VN   QT  P+I+A+G+C
Sbjct: 240  D-ELAVSA-GI--KVNRGIIVNDSMQTSDPDIYAVGEC 273

[Central intermediary metabolism, Nitrogen metabolism]. Length = 785

>gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated

 Score = 54.7 bits (132), Expect = 2e-07
 Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 2/75 (2%)

Query: 456 KVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGAS 515
           ++G+FPF AN +A    +  G VKV+ +    +++G+ IIGP A ELI +  + M +   
Sbjct: 367 RIGEFPFTANGKALIIGEQTGKVKVIVEPKYQEIVGISIIGPRATELIGQGTV-MIHTEV 425

Query: 516 CEDVART-CHAHPTV 529
             D+      AHPT+
Sbjct: 426 TADIMEDFIAAHPTL 440

Length = 458

>gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase

 Score = 53.6 bits (129), Expect = 4e-07
 Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 10/122 (8%)

Query: 929  GAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENV 988
            G  VT I     I     D E+ +  +  L K  +  +L  +V   S  G+         
Sbjct: 160  GKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVD--SIEGEERVKVF--- 214

Query: 989  KDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGD 1048
               T       D +++  G +P +     ++ G++  E G + VN +FQT +PNI+A GD
Sbjct: 215  ---TSGGVYQADMVILATGIKPNSELA--KDSGLKLGETGAIWVNEKFQTSVPNIYAAGD 269

Query: 1049 CI 1050
              
Sbjct: 270  VA 271

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol [Cellular processes, Detoxification]. Length = 427

>gnl|CDD|237806 PRK14727, PRK14727, putative mercuric reductase; Provisional

 Score = 53.4 bits (128), Expect = 5e-07
 Identities = 21/54 (38%), Positives = 34/54 (62%)

Query: 467 RAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVA 520
           RA  N +TDGF+K++ ++ T K++G  I+    GELI  A LA+    + E++A
Sbjct: 394 RALANFETDGFIKLVAEEGTRKLIGAQILAHEGGELIQSAALAIHNRMTVEELA 447

Length = 479

>gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase

 Score = 48.0 bits (115), Expect = 5e-07
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 922 GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNI 981
            S   +LG++VT +E  + +     D E+AK  Q  L K G++  L T V     +GD +
Sbjct: 15  ASALAKLGSKVTVVERRDRLLRG-FDEEIAKILQEKLEKNGIEVLLNTTVEEIEGNGDGV 73

Query: 982 TVTIEN 987
            V ++ 
Sbjct: 74  VVKLKT 79

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82

>gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase; Provisional

 Score = 51.3 bits (123), Expect = 2e-06
 Identities = 27/84 (32%), Positives = 40/84 (47%)

Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
           G+ Y V +   AA  RA  NND  G  KV+ +  T ++LG  + G  + E+IN   +AM+
Sbjct: 351 GLPYAVKELLVAAMPRAHVNNDLRGAFKVVVNTETKEILGATLFGEGSQEIINLITMAMD 410

Query: 512 YGASCEDVARTCHAHPTVCVEKND 535
                    +    HPT+    ND
Sbjct: 411 NKIPYTYFKKQIFTHPTMAENLND 434

Length = 438

>gnl|CDD|236112 PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed

 Score = 51.0 bits (123), Expect = 2e-06
 Identities = 24/71 (33%), Positives = 37/71 (52%)

Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
            +  +    P A N RAK +   DGFVK+     T  V+G  ++ P A ELI    LA++
Sbjct: 371 EVPARTVMLPLATNPRAKMSGLRDGFVKLFCRPGTGVVIGGVVVAPRASELILPIALAVQ 430

Query: 512 YGASCEDVART 522
              + +D+A+T
Sbjct: 431 NRLTVDDLAQT 441

Length = 466

>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed

 Score = 50.2 bits (121), Expect = 4e-06
 Identities = 36/122 (29%), Positives = 46/122 (37%), Gaps = 20/122 (16%)

Query: 955  QRILGKQGMQFKLGTKVTGASKSGDNITVTIE-NVKDPTKKE----ELSCDALLVCVGRR 1009
            +   G+ G       KVTG         V  E    D    E     L  D +L+ +G  
Sbjct: 353  KEFEGENG-------KVTGV------KVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFT 399

Query: 1010 PYTHNLGLEEIGIEKDEKGRVPVNSR-FQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVE 1068
                 L L + G+E DE+GRV      +QT  P +FA GD   G  L   A  EG     
Sbjct: 400  GPEAGL-LAQFGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQSLVVWAIAEGRQAAR 458

Query: 1069 GI 1070
             I
Sbjct: 459  AI 460

Length = 471

>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated

 Score = 49.8 bits (120), Expect = 6e-06
 Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 1/32 (3%)

Query: 531 VEKNDTLGGTCLNVGCIPSKALLNNSHYYHMA 562
           +E+   LGGTC+N GC+P+K L+ ++   H+A
Sbjct: 34  IERGL-LGGTCVNTGCVPTKTLIASARAAHLA 64

Length = 463

>gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant

 Score = 49.4 bits (118), Expect = 7e-06
 Identities = 22/55 (40%), Positives = 33/55 (60%)

Query: 478 VKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVE 532
           +K++ D   DKVLG H++GP A E+I    +A++ GA+ +D   T   HPT   E
Sbjct: 387 MKLVVDAKDDKVLGAHMVGPDAAEIIQGLAIALKMGATKDDFDSTVAVHPTSAEE 441

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria [Energy metabolism, Electron transport]. Length = 446

>gnl|CDD|184103 PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional

 Score = 49.4 bits (118), Expect = 7e-06
 Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 2/51 (3%)

Query: 1000 DALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCI 1050
            D ++  VG  P +  +  E   I+ D+KG +PVN +F+T +PNI+AIGD I
Sbjct: 231  DMIIEGVGTHPNSKFI--ESSNIKLDDKGFIPVNDKFETNVPNIYAIGDII 279

Length = 438

>gnl|CDD|130385 TIGR01318, gltD_gamma_fam, glutamate synthase small subunit family protein, proteobacterial

 Score = 49.4 bits (118), Expect = 8e-06
 Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 7/80 (8%)

Query: 996  ELSCDALLVCVGRRPYTHNLG-LEEIGIEKDEKGRVPVNS----RFQTVIPNIFAIGDCI 1050
             L  D +++  G +P  H +  L   GI  D  GR+         +QT  P IFA GD +
Sbjct: 384  VLPADVVIMAFGFQP--HAMPWLAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAV 441

Query: 1051 HGPMLAHKAEDEGIVCVEGI 1070
             G  L   A  EG    +GI
Sbjct: 442  RGADLVVTAVAEGRQAAQGI 461

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. Length = 467

>gnl|CDD|233700 TIGR02053, MerA, mercuric reductase

 Score = 49.3 bits (118), Expect = 9e-06
 Identities = 28/82 (34%), Positives = 34/82 (41%), Gaps = 14/82 (17%)

Query: 494 IIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALL 553
           IIG  A      A+ A E GAS             V + +   LGGTC+NVGC+PSK LL
Sbjct: 5   IIGSGAAAF-AAAIKAAELGAS-------------VAMVERGPLGGTCVNVGCVPSKMLL 50

Query: 554 NNSHYYHMAHSGDMKARGIEVE 575
             +   H A           V 
Sbjct: 51  RAAEVAHYARKPPFGGLAATVA 72

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH [Cellular processes, Detoxification]. Length = 463

>gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed

 Score = 49.3 bits (118), Expect = 9e-06
 Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 9/122 (7%)

Query: 928  LGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIEN 987
            LG  V  I+  + I     D E+    +  L + G++  L   V  +    D +   +  
Sbjct: 171  LGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVK-SLIGEDKVEGVV-- 227

Query: 988  VKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIG 1047
                T K E   D ++V  G +P T    LE+ G++  + G + V+   +T I NI+A G
Sbjct: 228  ----TDKGEYEADVVIVATGVKPNTE--FLEDTGLKTLKNGAIIVDEYGETSIENIYAAG 281

Query: 1048 DC 1049
            DC
Sbjct: 282  DC 283

Length = 444

>gnl|CDD|184298 PRK13748, PRK13748, putative mercuric reductase; Provisional

 Score = 49.0 bits (117), Expect = 1e-05
 Identities = 19/44 (43%), Positives = 30/44 (68%)

Query: 467 RAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAM 510
           RA  N DT GF+K++ ++ + +++GV  + P AGELI  A LA+
Sbjct: 476 RALANFDTRGFIKLVIEEGSGRLIGVQAVAPEAGELIQTAALAI 519

Length = 561

>gnl|CDD|237790 PRK14694, PRK14694, putative mercuric reductase; Provisional

 Score = 48.8 bits (116), Expect = 1e-05
 Identities = 20/54 (37%), Positives = 35/54 (64%)

Query: 467 RAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVA 520
           RA  N DT GF+K++ ++ + ++LGV ++   AGELI  AV+A+    +  ++A
Sbjct: 383 RALVNFDTGGFIKMVAERGSGRLLGVQVVAGEAGELIQTAVMALRARMTVNEIA 436

Length = 468

>gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide oxidoreductase family protein

 Score = 48.0 bits (115), Expect = 1e-05
 Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 14/103 (13%)

Query: 950  VAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009
            V +   R+L ++G++   G  VT          + + +         L  DA+L   G R
Sbjct: 193  VRRLVLRLLARRGIEVHEGAPVTRGPDG----ALILADG------RTLPADAILWATGAR 242

Query: 1010 PYTHNLGLEEIGIEKDEKGRVPVNSRFQTVI-PNIFAIGDCIH 1051
                   L E G+  DE G + V+   Q++  P++FA GDC  
Sbjct: 243  APPW---LAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAV 282

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. Length = 364

>gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed

 Score = 48.1 bits (115), Expect = 2e-05
 Identities = 21/38 (55%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 538 GGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVE 575
           GG CLNVGCIPSKALL N+   H+    + K  GI  E
Sbjct: 39  GGVCLNVGCIPSKALLRNAELAHIFTK-EAKTFGISGE 75

Length = 466

>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase; Provisional

 Score = 47.8 bits (115), Expect = 3e-05
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELI 503
            + Y+VG+  F   +RA+   D  G +K+L  + T ++LGVH  G  A E+I
Sbjct: 368 KVPYEVGRARFKELARAQIAGDNVGMLKILFHRETLEILGVHCFGERATEII 419

Length = 461

>gnl|CDD|237790 PRK14694, PRK14694, putative mercuric reductase; Provisional

 Score = 47.6 bits (113), Expect = 3e-05
 Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 15/111 (13%)

Query: 485 LTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNV 544
           ++D  L + +IG + G  +  A+ A E GA    + R              T+GGTC+N+
Sbjct: 2   MSDNNLHIAVIG-SGGSAMAAALKATERGARVTLIER-------------GTIGGTCVNI 47

Query: 545 GCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGTKSAAVKAL 595
           GC+PSK ++  +H  H+         G+  +   ++   ++  + A V+ L
Sbjct: 48  GCVPSKIMIRAAHIAHLRRESPFDD-GLSAQAPVVDRSALLAQQQARVEEL 97

Length = 468

>gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase

 Score = 46.9 bits (112), Expect = 3e-05
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 7/92 (7%)

Query: 977  SGDNI--TVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNS 1034
             GDN    V I+N     ++EEL  D + + +G  P   N  L +  +E DE G +  + 
Sbjct: 203  VGDNKVEGVKIKNTVT-GEEEELEVDGVFIAIGHEP---NTELLKGLLELDENGYIVTDE 258

Query: 1035 RFQTVIPNIFAIGDC-IHGPMLAHKAEDEGIV 1065
              +T +P +FA GD    G   A  A  +G +
Sbjct: 259  GMRTSVPGVFAAGDVRDKGYRQAVTAAGDGCI 290

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070) [Energy metabolism, Electron transport]. Length = 299

>gnl|CDD|200098 TIGR01423, trypano_reduc, trypanothione-disulfide reductase

 Score = 46.9 bits (111), Expect = 4e-05
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 4/75 (5%)

Query: 537 LGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEG--VKLNLETMMGTKSAAVKA 594
           LGGTC+NVGC+P K ++  + Y  M    +    G E +   VK N + ++  K+ AV  
Sbjct: 47  LGGTCVNVGCVPKKLMVTGAQY--MDTLRESAGFGWEFDRSSVKANWKALIAAKNKAVLD 104

Query: 595 LTGGIAHLFKSNKAL 609
           +      +F   + L
Sbjct: 105 INKSYEGMFADTEGL 119

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. Length = 486

>gnl|CDD|237806 PRK14727, PRK14727, putative mercuric reductase; Provisional

 Score = 46.9 bits (111), Expect = 5e-05
 Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 16/126 (12%)

Query: 488 KVLGVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCI 547
             L V IIG  +      A+ A E+GA                +E  D +GG C+NVGC+
Sbjct: 15  LQLHVAIIGSGSAAF-AAAIKAAEHGAR------------VTIIEGADVIGGCCVNVGCV 61

Query: 548 PSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGTKSAAVKAL-TGGIAHLFKSN 606
           PSK L+  +   H   S      G+E     ++   ++  + A V+ L       +   N
Sbjct: 62  PSKILIRAAQLAHQQRSNPFD--GVEAVAPSIDRGLLLHQQQARVEELRHAKYQSILDGN 119

Query: 607 KALKII 612
            AL ++
Sbjct: 120 PALTLL 125

Length = 479

>gnl|CDD|173442 PTZ00153, PTZ00153, lipoamide dehydrogenase; Provisional

 Score = 46.8 bits (111), Expect = 6e-05
 Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 19/92 (20%)

Query: 535 DTLGGTCLNVGCIPSKALL----------NNSHYYHMA--------HSGDMKARGIEVEG 576
           D++GGTC+NVGCIPSKALL          N +  Y              D   R   V  
Sbjct: 150 DSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFKNGKNDPVERNQLVAD 209

Query: 577 -VKLNLETMMGTKSAAVKALTGGIAHLFKSNK 607
            V++++  +     + +  L GGI +  KS K
Sbjct: 210 TVQIDITKLKEYTQSVIDKLRGGIENGLKSKK 241

Length = 659

>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional

 Score = 46.9 bits (112), Expect = 7e-05
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 995  EELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGP 1053
              L  D ++  +G +  T    L+  GI  D+KG   V++  +T + N++ IGD   GP
Sbjct: 764  VTLEADTVITAIGEQVDTE--LLKANGIPLDKKGWPVVDANGETSLTNVYMIGDVQRGP 820

Length = 1019

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 526 HPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLET 583
                +E+    GGTC N GC+P K LL  +    +A    +     +  GV++ L T
Sbjct: 23  LKVALIER---EGGTCYNRGCLPKKLLLEVAEGLELAIGLALPEEVYKEFGVEVLLGT 77

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

 Score = 45.7 bits (109), Expect = 1e-04
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 3/96 (3%)

Query: 978  GDNITVTIENVKDPTKKEE--LSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSR 1035
            G+ +              E   + D +++ +G      +  L E G++ D++GR+ V+  
Sbjct: 351  GEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDEN 410

Query: 1036 F-QTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGI 1070
              QT IP +FA GD + G  L   A  EG    + I
Sbjct: 411  LQQTSIPGVFAGGDAVRGAALVVWAIAEGREAAKAI 446

Length = 457

>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed

 Score = 44.2 bits (105), Expect = 4e-04
 Identities = 15/25 (60%), Positives = 20/25 (80%)

Query: 427 DTDGFVKVLGDKLTDKVLGVHIIGP 451
           DT GFVK++ D+ T ++LG HIIGP
Sbjct: 381 DTTGFVKLIADRDTGRLLGAHIIGP 405

Length = 451

>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase; Provisional

 Score = 43.2 bits (103), Expect = 7e-04
 Identities = 16/48 (33%), Positives = 26/48 (54%)

Query: 405 EGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPG 452
             + Y+VG+  F   +RA+   D  G +K+L  + T ++LGVH  G  
Sbjct: 367 AKVPYEVGRARFKELARAQIAGDNVGMLKILFHRETLEILGVHCFGER 414

Length = 461

>gnl|CDD|181196 PRK08010, PRK08010, pyridine nucleotide-disulfide oxidoreductase; Provisional

 Score = 43.1 bits (101), Expect = 7e-04
 Identities = 25/84 (29%), Positives = 41/84 (48%)

Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
           G + +V   P AA  RA+  NDT G +K + D  T ++LG  ++   + E+IN   + M+
Sbjct: 352 GADIQVVTLPVAAIPRARVMNDTRGVLKAIVDNKTQRILGASLLCVDSHEMINIVKMVMD 411

Query: 512 YGASCEDVARTCHAHPTVCVEKND 535
            G     +      HP++    ND
Sbjct: 412 AGLPYSILRDQIFTHPSMSESLND 435

Length = 441

>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated

 Score = 42.8 bits (102), Expect = 0.001
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 477 FVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPT 528
            +K++     +KV+G+H IG  A E+I    +A++ GA+  D   T   HPT
Sbjct: 390 LMKLVVVGKEEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTVAIHPT 441

Length = 450

>gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant

 Score = 42.5 bits (100), Expect = 0.001
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 529 VCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGTK 588
           V + +   +GGTC+  GC+P K ++  S +    H  D    G  V   + + + ++  K
Sbjct: 28  VAIAEEFRVGGTCVIRGCVPKKLMVYASQF--AEHFEDAAGYGWTVGKARFDWKKLLAAK 85

Query: 589 SAAVKALTG 597
              +  L+G
Sbjct: 86  DQEIARLSG 94

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria [Energy metabolism, Electron transport]. Length = 446

>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed

 Score = 41.9 bits (99), Expect = 0.001
 Identities = 16/20 (80%), Positives = 17/20 (85%), Gaps = 1/20 (5%)

Query: 531 VEKNDTLGGTCLNVGCIPSK 550
           VEK  T GGTCLNVGCIP+K
Sbjct: 28  VEKG-TFGGTCLNVGCIPTK 46

Length = 451

>gnl|CDD|184298 PRK13748, PRK13748, putative mercuric reductase; Provisional

 Score = 42.4 bits (100), Expect = 0.001
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 14/72 (19%)

Query: 490 LGVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPS 549
           L V +IG + G  +  A+ A+E GA              V + +  T+GGTC+NVGC+PS
Sbjct: 99  LHVAVIG-SGGAAMAAALKAVEQGA-------------RVTLIERGTIGGTCVNVGCVPS 144

Query: 550 KALLNNSHYYHM 561
           K ++  +H  H+
Sbjct: 145 KIMIRAAHIAHL 156

Length = 561

>gnl|CDD|172486 PRK13984, PRK13984, putative oxidoreductase; Provisional

 Score = 42.4 bits (100), Expect = 0.001
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 5/83 (6%)

Query: 990  DPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDE--KGRVPVNSRFQTVIPNIFAIG 1047
            D + +  +  D ++  +G+ P    L  EE+   K E  +GR+  N   QT IP +FA G
Sbjct: 518  DESDQIIVEADMVVEAIGQAPDYSYLP-EELK-SKLEFVRGRILTNEYGQTSIPWLFAGG 575

Query: 1048 DCIHGPMLAHKAEDEGIVCVEGI 1070
            D +HGP + H   D G    EGI
Sbjct: 576  DIVHGPDIIHGVAD-GYWAAEGI 597

Length = 604

>gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric

 Score = 42.2 bits (99), Expect = 0.001
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)

Query: 986  ENVKDPTKKEE--LSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNI 1043
            E    P    E  L  DA++V +G     + +  E   ++  E+G + V+   +T IP +
Sbjct: 361  ERRFLPCGDAECKLEADAVIVAIGNGS--NPIMAETTRLKTSERGTIVVDEDQRTSIPGV 418

Query: 1044 FAIGDCIHG 1052
            FA GD I G
Sbjct: 419  FAGGDIILG 427

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH [Amino acid biosynthesis, Glutamate family]. Length = 449

>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit

 Score = 42.5 bits (100), Expect = 0.001
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 996  ELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRF-QTVIPNIFAIGDCIHGP 1053
            +L  D ++  VG +  T    L++ GI  DE G   VN    +T I N+F IGD   GP
Sbjct: 762  DLPADTVIAAVGEQVDTD--LLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGP 818

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. Length = 1012

>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated

 Score = 41.7 bits (99), Expect = 0.002
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 537 LGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGTKSAAVKALT 596
           LGGTC+NVGC+P K +   +      H       G +V   K +   ++  + A +  L 
Sbjct: 38  LGGTCVNVGCVPKKLMWYGAQIAEAFHD-YAPGYGFDVTENKFDWAKLIANRDAYIDRLH 96

Query: 597 GGIAHLFKSNKA 608
           G   +  ++N  
Sbjct: 97  GSYRNGLENNGV 108

Length = 450

>gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional

 Score = 41.8 bits (99), Expect = 0.002
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 3/77 (3%)

Query: 995  EELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQ-TVIPNIFAIGDCIHGP 1053
            E L  D +++ +G+     + GLE +   +  +G V V+  F  T  P +FA GD + GP
Sbjct: 365  ETLEADLVVLAIGQD--IDSAGLESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVPGP 422

Query: 1054 MLAHKAEDEGIVCVEGI 1070
                 A   G      I
Sbjct: 423  RTVTTAIGHGKKAARNI 439

Length = 564

>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional

 Score = 41.1 bits (96), Expect = 0.003
 Identities = 15/56 (26%), Positives = 29/56 (51%)

Query: 477 FVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVE 532
           ++K++     + + G+HI+G  A E++    +A++  A+  D   T   HPT   E
Sbjct: 497 YLKLVCVGKEELIKGLHIVGLNADEILQGFAVALKMNATKADFDETIPIHPTAAEE 552

Length = 561

>gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase

 Score = 40.9 bits (96), Expect = 0.004
 Identities = 14/26 (53%), Positives = 18/26 (69%)

Query: 525 AHPTVCVEKNDTLGGTCLNVGCIPSK 550
           A   + + +  T GGTCLNVGCIP+K
Sbjct: 22  ADKRIAIVEKGTFGGTCLNVGCIPTK 47

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. Length = 452

>gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase

 Score = 40.5 bits (95), Expect = 0.004
 Identities = 15/25 (60%), Positives = 19/25 (76%)

Query: 427 DTDGFVKVLGDKLTDKVLGVHIIGP 451
           DT GF K++ D+ T K+LG HIIGP
Sbjct: 384 DTTGFCKLIADRDTGKLLGAHIIGP 408

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. Length = 452

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1074
KOG3617|consensus	1416		100.0
KOG3616|consensus	1636		100.0
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	100.0
KOG0405|consensus	478		100.0
KOG1335|consensus	506		100.0
KOG3616|consensus	1636		100.0
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	100.0
KOG4716|consensus	503		100.0
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	100.0
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	100.0
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	100.0
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	100.0
PLN02507	499	glutathione reductase	99.98
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	99.98
PRK07845	466	flavoprotein disulfide reductase; Reviewed	99.98
PRK06116	450	glutathione reductase; Validated	99.97
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	99.97
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	99.97
PRK06370	463	mercuric reductase; Validated	99.97
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	99.97
TIGR02053	463	MerA mercuric reductase. This model represents the	99.97
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	99.97
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	99.97
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	99.97
PLN02546	558	glutathione reductase	99.97
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	99.97
PTZ00058	561	glutathione reductase; Provisional	99.97
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	99.97
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	99.97
PRK07846	451	mycothione reductase; Reviewed	99.97
PRK14694	468	putative mercuric reductase; Provisional	99.97
PRK13748	561	putative mercuric reductase; Provisional	99.96
PRK14727	479	putative mercuric reductase; Provisional	99.96
PTZ00052	499	thioredoxin reductase; Provisional	99.96
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	99.96
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	99.96
PTZ00153	659	lipoamide dehydrogenase; Provisional	99.96
PRK14989	847	nitrite reductase subunit NirD; Provisional	99.96
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	99.96
PRK13512	438	coenzyme A disulfide reductase; Provisional	99.96
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	99.96
PRK09564	444	coenzyme A disulfide reductase; Reviewed	99.96
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	99.95
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	99.95
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	99.95
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.95
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	99.94
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	99.94
PRK12831	464	putative oxidoreductase; Provisional	99.94
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	99.94
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	99.93
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	99.93
PRK10262	321	thioredoxin reductase; Provisional	99.93
KOG1336|consensus	478		99.93
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	99.92
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	99.92
PRK12779	944	putative bifunctional glutamate synthase subunit b	99.92
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	99.92
PRK12814	652	putative NADPH-dependent glutamate synthase small	99.92
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	99.92
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	99.91
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	99.91
PRK12770	352	putative glutamate synthase subunit beta; Provisio	99.91
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	99.9
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	99.9
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	99.9
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	99.89
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	99.89
KOG0404|consensus	322		99.89
KOG2495|consensus	491		99.86
KOG2247|consensus	615		99.85
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	99.85
KOG1538|consensus	1081		99.84
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	99.84
PLN02852	491	ferredoxin-NADP+ reductase	99.84
PRK13984	604	putative oxidoreductase; Provisional	99.83
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	99.83
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	99.8
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	99.75
KOG1335|consensus	506		99.74
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	99.72
KOG2041|consensus	1189		99.7
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	99.67
KOG3851|consensus	446		99.67
KOG0399|consensus	2142		99.63
PRK14727	479	putative mercuric reductase; Provisional	99.63
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	99.62
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	99.62
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.62
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	99.62
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	99.62
PRK06370	463	mercuric reductase; Validated	99.62
PRK14694	468	putative mercuric reductase; Provisional	99.61
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	99.61
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	99.6
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	99.6
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	99.6
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	99.6
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	99.6
PF02852	110	Pyr_redox_dim: Pyridine nucleotide-disulphide oxid	99.59
PRK07846	451	mycothione reductase; Reviewed	99.59
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	99.59
PRK07845	466	flavoprotein disulfide reductase; Reviewed	99.59
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	99.59
PRK06116	450	glutathione reductase; Validated	99.59
TIGR02053	463	MerA mercuric reductase. This model represents the	99.58
PLN02546	558	glutathione reductase	99.57
KOG1346|consensus	659		99.56
PRK13748	561	putative mercuric reductase; Provisional	99.56
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	99.56
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	99.54
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	99.54
KOG2041|consensus	1189		99.53
PLN02507	499	glutathione reductase	99.53
KOG3617|consensus	1416		99.53
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	99.53
PTZ00153	659	lipoamide dehydrogenase; Provisional	99.52
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	99.48
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	99.48
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	99.47
PRK06567	1028	putative bifunctional glutamate synthase subunit b	99.46
KOG1538|consensus	1081		99.46
PTZ00058	561	glutathione reductase; Provisional	99.44
PTZ00052	499	thioredoxin reductase; Provisional	99.43
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.4
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.35
KOG2755|consensus	334		99.31
PRK13512	438	coenzyme A disulfide reductase; Provisional	99.27
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	99.26
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	99.23
PRK09564	444	coenzyme A disulfide reductase; Reviewed	99.23
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	99.12
PTZ00188	506	adrenodoxin reductase; Provisional	99.11
KOG0405|consensus	478		99.05
KOG1800|consensus	468		99.01
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.87
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.86
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	98.83
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	98.76
PLN03077	857	Protein ECB2; Provisional	98.6
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.59
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.58
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	98.52
KOG1399|consensus	448		98.45
KOG4716|consensus	503		98.44
KOG4626|consensus	966		98.41
COG2081	408	Predicted flavoproteins [General function predicti	98.38
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.37
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.35
PLN03218	1060	maturation of RBCL 1; Provisional	98.3
KOG4626|consensus	966		98.28
PF02852	110	Pyr_redox_dim: Pyridine nucleotide-disulphide oxid	98.27
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	98.23
KOG2003|consensus	840		98.22
PLN03218	1060	maturation of RBCL 1; Provisional	98.22
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.18
KOG1920|consensus	1265		98.17
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	98.13
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.13
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	98.12
KOG1920|consensus	1265		98.05
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	98.04
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.0
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.0
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	97.99
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	97.95
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.95
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.94
KOG0985|consensus	1666		97.93
PRK11788	389	tetratricopeptide repeat protein; Provisional	97.91
KOG2002|consensus	1018		97.89
PLN03077	857	Protein ECB2; Provisional	97.88
PRK08275	554	putative oxidoreductase; Provisional	97.87
PRK08401	466	L-aspartate oxidase; Provisional	97.85
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	97.79
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.78
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	97.78
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	97.77
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	97.76
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	97.74
KOG1840|consensus	508		97.74
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	97.72
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	97.71
KOG2495|consensus	491		97.67
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	97.61
KOG1840|consensus	508		97.6
KOG0985|consensus	1666		97.58
PLN02463	447	lycopene beta cyclase	97.57
PRK09077	536	L-aspartate oxidase; Provisional	97.55
KOG1586|consensus	288		97.55
KOG1126|consensus	638		97.55
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.54
PRK07804	541	L-aspartate oxidase; Provisional	97.54
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	97.53
PRK13977	576	myosin-cross-reactive antigen; Provisional	97.51
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	97.5
PRK08071	510	L-aspartate oxidase; Provisional	97.48
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	97.47
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	97.47
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	97.45
PLN02697	529	lycopene epsilon cyclase	97.44
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	97.44
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	97.44
TIGR00275	400	flavoprotein, HI0933 family. The model when search	97.44
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	97.43
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	97.42
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	97.42
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.4
PRK06847	375	hypothetical protein; Provisional	97.39
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	97.35
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.35
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	97.34
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.34
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	97.31
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	97.28
KOG0547|consensus	606		97.26
PRK08163	396	salicylate hydroxylase; Provisional	97.25
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.24
PRK06184	502	hypothetical protein; Provisional	97.23
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	97.22
KOG2076|consensus	895		97.22
PRK07395	553	L-aspartate oxidase; Provisional	97.21
KOG1585|consensus	308		97.21
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.18
PRK07588	391	hypothetical protein; Provisional	97.16
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	97.14
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	97.12
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.1
PRK09897	534	hypothetical protein; Provisional	97.1
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	97.1
PRK06126	545	hypothetical protein; Provisional	97.09
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	97.09
KOG2003|consensus	840		97.08
KOG1586|consensus	288		97.06
KOG0276|consensus	794		97.06
KOG2066|consensus	846		97.06
PRK10157	428	putative oxidoreductase FixC; Provisional	97.06
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.05
KOG0276|consensus	794		97.03
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	97.02
PRK06475	400	salicylate hydroxylase; Provisional	97.02
PRK11728	393	hydroxyglutarate oxidase; Provisional	97.0
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	97.0
PRK08244	493	hypothetical protein; Provisional	96.98
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	96.96
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	96.95
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	96.92
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	96.91
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	96.91
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	96.9
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	96.9
PRK07190	487	hypothetical protein; Provisional	96.88
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	96.88
KOG2376|consensus	652		96.87
PRK12370	553	invasion protein regulator; Provisional	96.87
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	96.84
PRK06834	488	hypothetical protein; Provisional	96.84
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	96.83
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	96.8
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	96.8
KOG0495|consensus	913		96.79
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	96.77
PRK10015	429	oxidoreductase; Provisional	96.77
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	96.75
COG0579	429	Predicted dehydrogenase [General function predicti	96.75
PRK12842	574	putative succinate dehydrogenase; Reviewed	96.74
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	96.73
PRK08132	547	FAD-dependent oxidoreductase; Provisional	96.72
KOG2076|consensus	895		96.7
PRK09126	392	hypothetical protein; Provisional	96.67
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	96.67
PRK14574	822	hmsH outer membrane protein; Provisional	96.65
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	96.65
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	96.64
COG2907	447	Predicted NAD/FAD-binding protein [General functio	96.62
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	96.61
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	96.58
PRK05868	372	hypothetical protein; Validated	96.57
smart00299	140	CLH Clathrin heavy chain repeat homology.	96.57
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	96.57
PRK11445	351	putative oxidoreductase; Provisional	96.56
PRK08013	400	oxidoreductase; Provisional	96.55
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	96.55
PRK11189	296	lipoprotein NlpI; Provisional	96.55
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	96.53
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	96.51
PRK07538	413	hypothetical protein; Provisional	96.51
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	96.51
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	96.49
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	96.49
PRK07233	434	hypothetical protein; Provisional	96.47
KOG1155|consensus	559		96.43
COG4783	484	Putative Zn-dependent protease, contains TPR repea	96.39
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	96.39
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	96.37
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	96.34
PRK15359	144	type III secretion system chaperone protein SscB;	96.34
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	96.33
PRK07236	386	hypothetical protein; Provisional	96.31
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	96.3
PRK12370	553	invasion protein regulator; Provisional	96.29
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	96.29
KOG0292|consensus	1202		96.27
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	96.25
KOG1346|consensus	659		96.22
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	96.22
PRK06753	373	hypothetical protein; Provisional	96.21
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	96.2
KOG1155|consensus	559		96.19
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	96.19
PRK07045	388	putative monooxygenase; Reviewed	96.15
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	96.14
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	96.11
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	96.11
KOG0547|consensus	606		96.07
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	96.05
PRK06175	433	L-aspartate oxidase; Provisional	96.04
KOG1336|consensus	478		95.98
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	95.97
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	95.95
PLN02661	357	Putative thiazole synthesis	95.93
PRK04841	903	transcriptional regulator MalT; Provisional	95.92
PRK08274	466	tricarballylate dehydrogenase; Validated	95.91
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	95.91
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	95.88
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	95.86
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	95.82
PRK06185	407	hypothetical protein; Provisional	95.8
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	95.8
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	95.8
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	95.79
PRK10370	198	formate-dependent nitrite reductase complex subuni	95.77
PLN02985	514	squalene monooxygenase	95.74
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	95.71
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	95.7
PLN02487	569	zeta-carotene desaturase	95.66
PRK10262	321	thioredoxin reductase; Provisional	95.66
PRK07121	492	hypothetical protein; Validated	95.62
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	95.61
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	95.6
PRK11189	296	lipoprotein NlpI; Provisional	95.56
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	95.56
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	95.54
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	95.54
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	95.49
KOG2247|consensus	615		95.42
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	95.32
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	95.22
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	95.19
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	95.18
KOG0495|consensus	913		95.17
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	95.16
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	95.07
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	95.02
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	94.98
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	94.98
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	94.97
KOG1524|consensus	737		94.92
PRK08294	634	phenol 2-monooxygenase; Provisional	94.91
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	94.81
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	94.81
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	94.8
KOG2114|consensus	933		94.8
PRK06996	398	hypothetical protein; Provisional	94.75
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	94.73
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	94.72
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	94.62
COG3898	531	Uncharacterized membrane-bound protein [Function u	94.61
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	94.6
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	94.57
KOG1126|consensus	638		94.53
PRK04841	903	transcriptional regulator MalT; Provisional	94.52
KOG2002|consensus	1018		94.48
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	94.48
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	94.47
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	94.41
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	94.39
TIGR02552	135	LcrH_SycD type III secretion low calcium response	94.36
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	94.31
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	94.3
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	94.3
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	94.24
PTZ00383	497	malate:quinone oxidoreductase; Provisional	94.24
PRK12770	352	putative glutamate synthase subunit beta; Provisio	94.19
PRK07512	513	L-aspartate oxidase; Provisional	94.13
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	94.06
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	94.06
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	94.05
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	94.01
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	93.88
KOG2404|consensus	477		93.79
KOG0029|consensus	501		93.77
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	93.64
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	93.6
KOG2820|consensus	399		93.53
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	93.47
PRK12831	464	putative oxidoreductase; Provisional	93.42
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	93.38
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	93.38
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	93.36
PRK15359	144	type III secretion system chaperone protein SscB;	93.36
KOG2114|consensus	933		93.35
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	93.34
KOG0548|consensus	539		93.34
PRK14574	822	hmsH outer membrane protein; Provisional	93.27
PRK12839	572	hypothetical protein; Provisional	93.26
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	93.24
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	93.23
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	93.21
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	93.13
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	93.09
smart00299	140	CLH Clathrin heavy chain repeat homology.	93.08
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	93.08
KOG1130|consensus	639		93.05
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	93.04
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	93.0
PLN02815	594	L-aspartate oxidase	92.94
KOG0553|consensus	304		92.91
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	92.9
PTZ00367	567	squalene epoxidase; Provisional	92.77
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	92.71
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	92.68
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	92.58
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	92.5
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	92.5
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	92.49
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	92.45
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	92.4
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	92.31
PF12688	120	TPR_5: Tetratrico peptide repeat	92.16
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	92.06
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	92.06
KOG1129|consensus	478		92.04
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	92.03
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	91.99
KOG1127|consensus	1238		91.96
PRK11883	451	protoporphyrinogen oxidase; Reviewed	91.9
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	91.84
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	91.67
PF12931	284	Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_	91.5
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	91.47
PRK10370	198	formate-dependent nitrite reductase complex subuni	91.34
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	91.32
KOG0548|consensus	539		91.3
KOG3060|consensus	289		91.02
PRK14720	906	transcript cleavage factor/unknown domain fusion p	90.99
PRK07208	479	hypothetical protein; Provisional	90.94
KOG2415|consensus	621		90.87
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	90.83
KOG2311|consensus	679		90.71
COG3349	485	Uncharacterized conserved protein [Function unknow	90.7
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	90.58
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	90.58
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	90.54
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	90.49
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	90.35
PRK10803	263	tol-pal system protein YbgF; Provisional	90.32
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	90.3
TIGR02552	135	LcrH_SycD type III secretion low calcium response	90.29
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	90.28
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	90.13
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	90.12
PLN02268	435	probable polyamine oxidase	90.12
COG2081	408	Predicted flavoproteins [General function predicti	90.11
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	90.02
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	89.88
KOG1585|consensus	308		89.87
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	89.86
KOG1276|consensus	491		89.79
PRK12814	652	putative NADPH-dependent glutamate synthase small	89.78
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	89.76
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	89.68
PRK12416	463	protoporphyrinogen oxidase; Provisional	89.56
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	89.53
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	89.52
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	89.4
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	89.37
KOG1174|consensus	564		89.35
KOG1156|consensus	700		89.32
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.31
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	89.27
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	89.2
KOG2665|consensus	453		89.2
KOG2852|consensus	380		89.18
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	89.17
KOG1125|consensus	579		89.17
KOG0550|consensus	486		89.11
PRK15331	165	chaperone protein SicA; Provisional	88.75
PLN02529	738	lysine-specific histone demethylase 1	88.28
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	88.27
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	88.24
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	88.15
KOG0685|consensus	498		88.0
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	87.63
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	87.55
PF12688	120	TPR_5: Tetratrico peptide repeat	87.54
KOG1173|consensus	611		87.52
KOG0543|consensus	397		87.39
PRK13984	604	putative oxidoreductase; Provisional	87.32

>KOG3617|consensus

Probab=100.00  E-value=4.5e-65  Score=573.75  Aligned_cols=365  Identities=43%  Similarity=0.711  Sum_probs=319.8

Q ss_pred             hHHhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhh
Q psy14927          3 EEETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSM   82 (1074)
Q Consensus         3 ~~~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~   82 (1074)
                      -.+||..++++.|+.+|||+++|.++|+||+.+++..+++|+++.++|.||+|||+|+|+.|+++.|+.+|..|+||.++
T Consensus       865 A~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~  944 (1416)
T KOG3617|consen  865 AKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSM  944 (1416)
T ss_pred             HHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhh
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhH
Q psy14927         83 VRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQ  162 (1074)
Q Consensus        83 vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~  162 (1074)
                      ||++|.+|++++|.+|+++++|.++||++||+||+.|++.+||.||++|+.|.+||||||+|++.|+++++++.++++++
T Consensus       945 VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~ 1024 (1416)
T KOG3617|consen  945 VRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDL 1024 (1416)
T ss_pred             eeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcc-C-ChhHHHHHHHHhCChHHHHHHHHhhcc--------------CCc------------------------
Q psy14927        163 IEAATYLET-I-EPDKAVLLYHKAGALHKALDLAFKLTL--------------SNS------------------------  202 (1074)
Q Consensus       163 ~~~A~~~e~-~-~~~~A~~ly~kaG~~~kAl~l~~~~~~--------------~~~------------------------  202 (1074)
                      ..+|+|||+ + ++.+||+||||||.+.|||+++|..+.              +|.                        
T Consensus      1025 v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~ 1104 (1416)
T KOG3617|consen 1025 VSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLC 1104 (1416)
T ss_pred             HHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            999999999 5 589999999999999999999998652              110                        


Q ss_pred             --------------------------------c----------------h------H-----------HHHHHHHHHhcC
Q psy14927        203 --------------------------------G----------------L------V-----------FQIKAMKCLLKS  217 (1074)
Q Consensus       203 --------------------------------~----------------~------~-----------~~~~a~k~l~~~  217 (1074)
                                                      +                +      |           .+++||++|+||
T Consensus      1105 ~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraLLKS 1184 (1416)
T KOG3617|consen 1105 LAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAMRALLKS 1184 (1416)
T ss_pred             HHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHHHhc
Confidence                                            0                0      1           268999999999


Q ss_pred             CChhhHHHhhhhcchHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHhHHHHhhcCHHHHHHHHH
Q psy14927        218 GDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGALN  297 (1074)
Q Consensus       218 ~~~~~~i~~a~~~r~~~l~~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~a~~ei~e~~~y~~a~~~l~  297 (1074)
                      ||++||+|||+.+|++|||+|||||||++||+.+|+.+|+|+.||+|+++|+.+|+||.+|||.||+|+++|+||+.+|.
T Consensus      1185 Gdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAqiEiee~q~ydKa~gAl~ 1264 (1416)
T KOG3617|consen 1185 GDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQIEIEELQTYDKAMGALE 1264 (1416)
T ss_pred             CCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhhhhcchhHHHHHHHHHHHHHhhHHHHhhhhHHhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCchHH-----HHHHHHHHHHHHHHh----hcCChHHHhhHHHHHHHHHhhcc--CcchhH--HHHHHHH
Q psy14927        298 EAKRCLLKHNDSMYET-----LKSSVVEKLAEVEID----EFGNYEKGLGALNEAKRCLLKHN--DSMYET--LKSSVVE  364 (1074)
Q Consensus       298 ~a~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~~~~~--~~~~~i--~~~~~~~  364 (1074)
                      +|.+||.|+..+..++     |++.+..  +|..+.    ...||...|++..-....    |  +..+|+  +.--.||
T Consensus      1265 eA~kCl~ka~~k~~~~t~l~~Lq~~~a~--vk~~l~~~q~~~eD~~~~i~qc~~llee----p~ld~~Ir~~~~~a~lie 1338 (1416)
T KOG3617|consen 1265 EAAKCLLKAEQKNMSTTGLDALQEDLAK--VKVQLRKLQIMKEDAADGIRQCTTLLEE----PILDDIIRCTRLFALLIE 1338 (1416)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHhhC----cCCCCcchhHHHHHHHHH
Confidence            9999999987543322     3333333  333333    137888887754443332    2  223332  1123567


Q ss_pred             HHHHHhhhh
Q psy14927        365 KIAEVDKYL  373 (1074)
Q Consensus       365 ~~~~~~~~~  373 (1074)
                      ++....+|-
T Consensus      1339 ~~v~~k~y~ 1347 (1416)
T KOG3617|consen 1339 DHVSRKNYK 1347 (1416)
T ss_pred             HHHhhhhcc
Confidence            765444444

>KOG3616|consensus

Probab=100.00  E-value=8.4e-55  Score=484.53  Aligned_cols=577  Identities=17%  Similarity=0.187  Sum_probs=487.2

Q ss_pred             cHHHHHHHhhc----CCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHHH--
Q psy14927         36 NTDKLEKYIIQ----SKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAY--  109 (1074)
Q Consensus        36 ~~~~~~~~~~~----~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~--  109 (1074)
                      +|+++..++.+    ++...||..+++.+.+.|++..|.+||.+-||+ ..+|.|.....+  |.+..++.|+.+.-+  
T Consensus       459 df~ra~afles~~~~~da~amw~~laelale~~nl~iaercfaai~dv-ak~r~lhd~~ei--adeas~~~ggdgt~fyk  535 (1636)
T KOG3616|consen  459 DFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFAAIGDV-AKARFLHDILEI--ADEASIEIGGDGTDFYK  535 (1636)
T ss_pred             chHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-HHHHHHHHHHHH--HHHHhHhhCCCCchHHH
Confidence            67666666665    566779999999999999999999999999999 889999988888  888888877665432  


Q ss_pred             ---HHH----------HHHHhcCChHHHHHHHHHhCChHHHHHHHHHhC------chHHHHHHhhhcCchhHHHHHHHHc
Q psy14927        110 ---HLA----------RQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQA------LDDQLWNLALSAGPSEQIEAATYLE  170 (1074)
Q Consensus       110 ---~la----------~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~------~~~~~~~l~~~~~~~~~~~~A~~~e  170 (1074)
                         ++|          ++|.++|+.++||-||+..|+|+||+.||+..|      +...|+++..++.|+.  ++|+.-+
T Consensus       536 vra~lail~kkfk~ae~ifleqn~te~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~--ka~elk~  613 (1636)
T KOG3616|consen  536 VRAMLAILEKKFKEAEMIFLEQNATEEAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDE--KAAELKE  613 (1636)
T ss_pred             HHHHHHHHHhhhhHHHHHHHhcccHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchh--hhhhhcc
Confidence               333          778899999999999999999999999999998      6778888888899988  8999999


Q ss_pred             c-CChhHHHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcCCCC
Q psy14927        171 T-IEPDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWK  249 (1074)
Q Consensus       171 ~-~~~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~~~~  249 (1074)
                      + |+-..|+.||.|+|+|.+|++++++....                +.|.+.+-.++..+.+.+||.+|++.++..   
T Consensus       614 sdgd~laaiqlyika~~p~~a~~~a~n~~~l----------------~~de~il~~ia~alik~elydkagdlfeki---  674 (1636)
T KOG3616|consen  614 SDGDGLAAIQLYIKAGKPAKAARAALNDEEL----------------LADEEILEHIAAALIKGELYDKAGDLFEKI---  674 (1636)
T ss_pred             ccCccHHHHHHHHHcCCchHHHHhhcCHHHh----------------hccHHHHHHHHHHHHhhHHHHhhhhHHHHh---
Confidence            9 78899999999999999999999885433                678889999999999999999999999999   


Q ss_pred             CChhHHHHHHHHHHccCCHHHHH-----HHHHHHHhHHHHhhcCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q psy14927        250 SQPELLKSIISFYSKGKAPHLLA-----NFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAE  324 (1074)
Q Consensus       250 ~~~~~~~~i~~~Y~k~~~~~~aa-----~~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~  324 (1074)
                         +++.+++++|.|+.+|.+|.     +|++.+...| ++||++....++|+.|++|+.++++.++             
T Consensus       675 ---~d~dkale~fkkgdaf~kaielarfafp~evv~le-e~wg~hl~~~~q~daainhfiea~~~~k-------------  737 (1636)
T KOG3616|consen  675 ---HDFDKALECFKKGDAFGKAIELARFAFPEEVVKLE-EAWGDHLEQIGQLDAAINHFIEANCLIK-------------  737 (1636)
T ss_pred             ---hCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHH-HHHhHHHHHHHhHHHHHHHHHHhhhHHH-------------
Confidence               88899999999999999977     7899999999 9999999999999999999999998877             


Q ss_pred             HHHhhcCChHHHhhHHHHHHHHHhhccCcchhHHHHHHHHHHHHHhhhhhccccccccccCCceEEeccchhhccHHHHh
Q psy14927        325 VEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKIAEVDKYLEMKRNQSFRSSNTDIILPVEKWTLLSLARVL  404 (1074)
Q Consensus       325 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (1074)
                         ++            ++++.+++||+++. ||.  .+++.+-..+|+..                             
T Consensus       738 ---ai------------eaai~akew~kai~-ild--niqdqk~~s~yy~~-----------------------------  770 (1636)
T KOG3616|consen  738 ---AI------------EAAIGAKEWKKAIS-ILD--NIQDQKTASGYYGE-----------------------------  770 (1636)
T ss_pred             ---HH------------HHHhhhhhhhhhHh-HHH--HhhhhccccccchH-----------------------------
Confidence               64            89999999999997 888  67766533444422                             


Q ss_pred             ccccccccccccccccccccccCCcceEEEEeccCCCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEEC
Q psy14927        405 EGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDK  484 (1074)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~  484 (1074)
                                                             ++.|+...| ++++.+..|..                    
T Consensus       771 ---------------------------------------iadhyan~~-dfe~ae~lf~e--------------------  790 (1636)
T KOG3616|consen  771 ---------------------------------------IADHYANKG-DFEIAEELFTE--------------------  790 (1636)
T ss_pred             ---------------------------------------HHHHhccch-hHHHHHHHHHh--------------------
Confidence                                                   556666666 45544433331                    


Q ss_pred             CCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHHhhhcccCCccccccccccCCcccccCCCchHHHhhcchhhHHhcc
Q psy14927        485 LTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHS  564 (1074)
Q Consensus       485 ~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l~~~~~~hPt~s~e~~~~~ggtc~n~GCvpkk~l~~aa~~~~~~~~  564 (1074)
                                 |.--.+.|.++..+-+|..                   ..++...|+.+..+-+.++-.|.++.+++++
T Consensus       791 -----------~~~~~dai~my~k~~kw~d-------------------a~kla~e~~~~e~t~~~yiakaedldehgkf  840 (1636)
T KOG3616|consen  791 -----------ADLFKDAIDMYGKAGKWED-------------------AFKLAEECHGPEATISLYIAKAEDLDEHGKF  840 (1636)
T ss_pred             -----------cchhHHHHHHHhccccHHH-------------------HHHHHHHhcCchhHHHHHHHhHHhHHhhcch
Confidence                       2333445555555543332                   4577888999999999999999999999999


Q ss_pred             CccccCCeeccCcccCHHHHHHHH--HHHHHHHHHHHHHHhhhCccchhhHHHHHHHhhhhHHHHHHHHHHHHhhhcHHH
Q psy14927        565 GDMKARGIEVEGVKLNLETMMGTK--SAAVKALTGGIAHLFKSNKALKIITKQIILILIIYRVLLKWWAQYIESTEDMDL  642 (1074)
Q Consensus       565 ~~a~~~G~~~~~~~~~w~~~~~~~--~~~i~~l~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~  642 (1074)
                      .++++++|++++|+..+.||.+++  |+||+.+..+++++|.+++.+                    +|.-++++|+.++
T Consensus       841 ~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~--------------------f~~e~e~~g~lka  900 (1636)
T KOG3616|consen  841 AEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKH--------------------FAKELEAEGDLKA  900 (1636)
T ss_pred             hhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHH--------------------HHHHHHhccChhH
Confidence            999999999999999999999998  999999999999999998888                    9999999999999


Q ss_pred             HHHHHHHhhCHHHHHHHHHHcCCHHHHHHHHHhcCCcHHHHHH-------------------------------------
Q psy14927        643 AMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHL-------------------------------------  685 (1074)
Q Consensus       643 A~~~y~~ag~~~~ai~~~~~~~~~~~a~~v~~~~~~~~~~~~~-------------------------------------  685 (1074)
                      |++||++||+|+.+|+||...+.|++|++|++..++....+++                                     
T Consensus       901 ae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd  980 (1636)
T KOG3616|consen  901 AEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFD  980 (1636)
T ss_pred             HHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchh
Confidence            9999999999999999999999999999999877766665533                                     


Q ss_pred             ---------------------HHHHHhcCCHHHH-------------------------HHHHHHcC-CHHHHHHH---h
Q psy14927        686 ---------------------ARQYENSGQFDEA-------------------------IHFYSVAG-SCGNAVRL---C  715 (1074)
Q Consensus       686 ---------------------A~~~~~~g~~~~A-------------------------~~~~~kag-~~~~Av~m---a  715 (1074)
                                           |.+|++.|.++.|                         ..-|+++| +|++||.|   .
T Consensus       981 ~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~d 1060 (1636)
T KOG3616|consen  981 FAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHD 1060 (1636)
T ss_pred             hHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHhhhc
Confidence                                 9999999999999                         55566777 99999999   6


Q ss_pred             ccHHHHHHHHHHhCCcccHHHHHHHHHHH-------------HHcCCHHHHHHHHHHhCCHHHHHHHHHHcCCCCchhh-
Q psy14927        716 GQLDAVESIASELNVQSDQDLILKCASYF-------------ARREHHDRAVQMYAIARRYDQALSLIQTKHVPLSEEL-  781 (1074)
Q Consensus       716 ~~w~~a~~~A~~~~~~~~~~~~~~~a~~~-------------~~~~~~~~Ai~~y~~ag~~~~Ai~~~~~~~~~~~~~~-  781 (1074)
                      ++|..|.|+|+.|+|...+++|+++|+..             +++++|+.+..+|..++.|.+|+|+|+.|.|  .+-. 
T Consensus      1061 ndwa~aervae~h~~~~l~dv~tgqar~aiee~d~~kae~fllrankp~i~l~yf~e~~lw~dalri~kdylp--~q~a~ 1138 (1636)
T KOG3616|consen 1061 NDWAAAERVAEAHCEDLLADVLTGQARGAIEEGDFLKAEGFLLRANKPDIALNYFIEAELWPDALRIAKDYLP--HQAAA 1138 (1636)
T ss_pred             ccHHHHHHHHHhhChhhhHHHHhhhhhccccccchhhhhhheeecCCCchHHHHHHHhccChHHHHHHHhhCh--hHHHH
Confidence            99999999999999999999999999865             6788889999999999999999999999988  3333 


Q ss_pred             hhcCCCCCCCccchhhhhhccccchHHHHHHHhhhhhhhcc
Q psy14927        782 ADLLVPPESDDQRQVVLNTLGNCAAVQANYHLATKLFTQAG  822 (1074)
Q Consensus       782 ~~~~~~~~~~~~k~~VviiGgG~AGl~aA~~la~~l~e~~~  822 (1074)
                      +|.+++      |.   -+.-|..|...-...++ -++..+
T Consensus      1139 iqeeye------k~---~~k~gargvd~fvaqak-~weq~g 1169 (1636)
T KOG3616|consen 1139 IQEEYE------KE---ALKKGARGVDGFVAQAK-EWEQAG 1169 (1636)
T ss_pred             HHHHHH------HH---HHhccccccHHHHHHHH-HHHhcc
Confidence            666662      22   23345566655555555 455544

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=100.00  E-value=7.3e-37  Score=353.19  Aligned_cols=210  Identities=40%  Similarity=0.633  Sum_probs=179.6

Q ss_pred             CeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcceechhhHhcchH--------------
Q psy14927        856 KVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK--------------  921 (1074)
Q Consensus       856 gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t~~~~~~~~~--------------  921 (1074)
                      ||+++.|++.+++++++.|...  +.++++++++|||||++|..+|+.+.++..++++++.+...+              
T Consensus       108 ~V~vi~G~a~f~~~~~v~V~~~--~~~~~~a~~iiIATGS~p~~~~~~~~~~~~~~~s~~~l~~~~lP~~lvIiGgG~IG  185 (454)
T COG1249         108 GVDVIRGEARFVDPHTVEVTGE--DKETITADNIIIATGSRPRIPPGPGIDGARILDSSDALFLLELPKSLVIVGGGYIG  185 (454)
T ss_pred             CCEEEEEEEEECCCCEEEEcCC--CceEEEeCEEEEcCCCCCcCCCCCCCCCCeEEechhhcccccCCCEEEEECCCHHH
Confidence            3444455555555555555443  236899999999999999766655556667888888665555              


Q ss_pred             ---hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEE
Q psy14927        922 ---GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELS  998 (1074)
Q Consensus       922 ---A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~  998 (1074)
                         |..++++|.+|||+++.++++ |.+|+++++.+.+.|++.||++++++.+++++..++++.+++++    |.+.+++
T Consensus       186 lE~a~~~~~LG~~VTiie~~~~iL-p~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~----g~~~~~~  260 (454)
T COG1249         186 LEFASVFAALGSKVTVVERGDRIL-PGEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLED----GEGGTIE  260 (454)
T ss_pred             HHHHHHHHHcCCcEEEEecCCCCC-CcCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEec----CCCCEEE
Confidence               999999999999999999999 89999999999999999999999999999999876667777776    3334899


Q ss_pred             cCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHhhC
Q psy14927        999 CDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus       999 ~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I~~ 1072 (1074)
                      +|.|++|+|++||++.+++++.|+++|++|+|.||..++|++|||||+|||+++|.+++.|..+|++||.||+|
T Consensus       261 ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~Tnvp~IyA~GDV~~~~~Lah~A~~eg~iaa~~i~g  334 (454)
T COG1249         261 ADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPGIYAIGDVIGGPMLAHVAMAEGRIAAENIAG  334 (454)
T ss_pred             eeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCccccCCCCEEEeeccCCCcccHhHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999888889999999999999988999999999999999996

>KOG0405|consensus

Probab=100.00  E-value=7.2e-37  Score=320.87  Aligned_cols=311  Identities=26%  Similarity=0.408  Sum_probs=259.2

Q ss_pred             EEEEEeCCChhHHHHHHHHHHHcCCCHHHHhhhcccCCccccccccccCCcccccCCCchHHHhhcchhhHHhccCcccc
Q psy14927        490 LGVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKA  569 (1074)
Q Consensus       490 lG~~iiG~~a~eli~~~a~a~~~~~~~~~l~~~~~~hPt~s~e~~~~~ggtc~n~GCvpkk~l~~aa~~~~~~~~~~a~~  569 (1074)
                      ...-+||.+++.+. .+..|..+|.++            .-+|+-..+||||+|+||||||+||+++.+.+..+  |+++
T Consensus        21 fDylvIGgGSGGva-sARrAa~~GAkv------------~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~--da~~   85 (478)
T KOG0405|consen   21 FDYLVIGGGSGGVA-SARRAASHGAKV------------ALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEME--DAKD   85 (478)
T ss_pred             cceEEEcCCcchhH-HhHHHHhcCceE------------EEEecCCCcCceEEeeccccceeEEehhhhhHHhh--hhhh
Confidence            34567899999988 466777888754            33455458999999999999999999999988776  5899


Q ss_pred             CCeecc-CcccCHHHHHHHHHHHHHHHHHHHHHHhhhCccchhhHHHHHHHhhhhHHHHHHHHHHHHhhhcHHHHHHHHH
Q psy14927        570 RGIEVE-GVKLNLETMMGTKSAAVKALTGGIAHLFKSNKALKIITKQIILILIIYRVLLKWWAQYIESTEDMDLAMKYYE  648 (1074)
Q Consensus       570 ~G~~~~-~~~~~w~~~~~~~~~~i~~l~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~  648 (1074)
                      |||..+ .++|||.++++.||++|.+||..|+++|.+.+|+                +++|||+|.              
T Consensus        86 yG~~~~~~~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~----------------~i~G~a~f~--------------  135 (478)
T KOG0405|consen   86 YGFPINEEGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVK----------------LIEGRARFV--------------  135 (478)
T ss_pred             cCCccccccCCcHHHHHhhhhHHHHHHHHHHHhhcccccee----------------EEeeeEEEc--------------
Confidence            999985 5999999999999999999999999999888888                444444332              


Q ss_pred             HhhCHHHHHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHHHhcCCHHHHHHHHHHcCCHHHHHHHhccHHHHHHHHHHh
Q psy14927        649 EARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCGQLDAVESIASEL  728 (1074)
Q Consensus       649 ~ag~~~~ai~~~~~~~~~~~a~~v~~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~kag~~~~Av~ma~~w~~a~~~A~~~  728 (1074)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (478)
T KOG0405|consen  136 --------------------------------------------------------------------------------  135 (478)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHcCCCCchhhhhcCCCCCCCccchhhhhhccccchHH
Q psy14927        729 NVQSDQDLILKCASYFARREHHDRAVQMYAIARRYDQALSLIQTKHVPLSEELADLLVPPESDDQRQVVLNTLGNCAAVQ  808 (1074)
Q Consensus       729 ~~~~~~~~~~~~a~~~~~~~~~~~Ai~~y~~ag~~~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~k~~VviiGgG~AGl~  808 (1074)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (478)
T KOG0405|consen  136 --------------------------------------------------------------------------------  135 (478)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhhhhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCe
Q psy14927        809 ANYHLATKLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKN  888 (1074)
Q Consensus       809 aA~~la~~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~  888 (1074)
                                                                                 ++..+.|...+|....+++.+
T Consensus       136 -----------------------------------------------------------~~~~v~V~~~d~~~~~Ytak~  156 (478)
T KOG0405|consen  136 -----------------------------------------------------------SPGEVEVEVNDGTKIVYTAKH  156 (478)
T ss_pred             -----------------------------------------------------------CCCceEEEecCCeeEEEecce
Confidence                                                                       222233333344334588999


Q ss_pred             EEEccCCCCCCCCCCCCCCcceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHH
Q psy14927        889 ILIATGSEVTPFPGIEVDEETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVA  951 (1074)
Q Consensus       889 lIIATG~~p~~ipgi~~~~~~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~  951 (1074)
                      ++||||++|. +|.+|+ .+..++++.++.+.+                 |..++.+|.+++++-|.+.++ +.||+.++
T Consensus       157 iLIAtGg~p~-~PnIpG-~E~gidSDgff~Lee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvL-R~FD~~i~  233 (478)
T KOG0405|consen  157 ILIATGGRPI-IPNIPG-AELGIDSDGFFDLEEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVL-RGFDEMIS  233 (478)
T ss_pred             EEEEeCCccC-CCCCCc-hhhccccccccchhhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhh-cchhHHHH
Confidence            9999999983 455554 356778888888877                 888999999999999999999 89999999


Q ss_pred             HHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCee
Q psy14927        952 KQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVP 1031 (1074)
Q Consensus       952 ~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~ 1031 (1074)
                      ..+.+.|+..||+++.++.++++....++..+....     .+....+|.++||+|+.|++.-|++++.|+++|..|.|.
T Consensus       234 ~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~-----~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~Ii  308 (478)
T KOG0405|consen  234 DLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITS-----HGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAII  308 (478)
T ss_pred             HHHHHHhhhcceeecccccceeeeecCCCceEEEEe-----ccccccccEEEEEecCCCCcccccchhcceeeCCCCCEE
Confidence            999999999999999999999998876663333222     134455999999999999999999999999999999999


Q ss_pred             eCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHhhC
Q psy14927       1032 VNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus      1032 Vd~~~~ts~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I~~ 1072 (1074)
                      ||++.+||+|+||++||+++.-.+...|+..|+..++.+++
T Consensus       309 vDeYq~Tnvp~I~avGDv~gk~~LTPVAiaagr~la~rlF~  349 (478)
T KOG0405|consen  309 VDEYQNTNVPSIWAVGDVTGKINLTPVAIAAGRKLANRLFG  349 (478)
T ss_pred             EeccccCCCCceEEeccccCcEecchHHHhhhhhHHHHhhc
Confidence            99999999999999999999888999999999999999987

>KOG1335|consensus

Probab=100.00  E-value=9.4e-36  Score=316.52  Aligned_cols=319  Identities=61%  Similarity=0.984  Sum_probs=278.6

Q ss_pred             EEEEeCCChhHHHHHHHHHHHcCCCHHHHhhhcccCCccccccccccCCcccccCCCchHHHhhcchhhHHhccCccccC
Q psy14927        491 GVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKAR  570 (1074)
Q Consensus       491 G~~iiG~~a~eli~~~a~a~~~~~~~~~l~~~~~~hPt~s~e~~~~~ggtc~n~GCvpkk~l~~aa~~~~~~~~~~a~~~  570 (1074)
                      .+.|||.+.+..+ .+..|.+.|+            -|..+|....+||||+|+||||+|.|++.+.+.+..++.+++..
T Consensus        41 DvvvIG~GpGGyv-AAikAaQlGl------------kTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~r  107 (506)
T KOG1335|consen   41 DVVVIGGGPGGYV-AAIKAAQLGL------------KTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASR  107 (506)
T ss_pred             CEEEECCCCchHH-HHHHHHHhcc------------eeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhc
Confidence            4678899999998 4556668998            56889988999999999999999999999999998876588999


Q ss_pred             CeeccCcccCHHHHHHHHHHHHHHHHHHHHHHhhhCccchhhHHHHHHHhhhhHHHHHHHHHHHHhhhcHHHHHHHHHHh
Q psy14927        571 GIEVEGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKALKIITKQIILILIIYRVLLKWWAQYIESTEDMDLAMKYYEEA  650 (1074)
Q Consensus       571 G~~~~~~~~~w~~~~~~~~~~i~~l~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a  650 (1074)
                      |+.+....+|.+.+++++++.|+.|.++++.++++++|+                ++.|                     
T Consensus       108 Gi~vs~~~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~----------------~~kG---------------------  150 (506)
T KOG1335|consen  108 GIDVSSVSLDLQAMMKAKDNAVKQLTGGIENLFKKNKVT----------------YVKG---------------------  150 (506)
T ss_pred             CccccceecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeE----------------EEee---------------------
Confidence            999888888988888888888888888888777777777                2222                     


Q ss_pred             hCHHHHHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHHHhcCCHHHHHHHHHHcCCHHHHHHHhccHHHHHHHHHHhCC
Q psy14927        651 RDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCGQLDAVESIASELNV  730 (1074)
Q Consensus       651 g~~~~ai~~~~~~~~~~~a~~v~~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~kag~~~~Av~ma~~w~~a~~~A~~~~~  730 (1074)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (506)
T KOG1335|consen  151 --------------------------------------------------------------------------------  150 (506)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHcCCCCchhhhhcCCCCCCCccchhhhhhccccchHHHH
Q psy14927        731 QSDQDLILKCASYFARREHHDRAVQMYAIARRYDQALSLIQTKHVPLSEELADLLVPPESDDQRQVVLNTLGNCAAVQAN  810 (1074)
Q Consensus       731 ~~~~~~~~~~a~~~~~~~~~~~Ai~~y~~ag~~~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~k~~VviiGgG~AGl~aA  810 (1074)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (506)
T KOG1335|consen  151 --------------------------------------------------------------------------------  150 (506)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHhhhhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEE
Q psy14927        811 YHLATKLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNIL  890 (1074)
Q Consensus       811 ~~la~~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lI  890 (1074)
                                                                          ...+++|..+++...||+...+.++++|
T Consensus       151 ----------------------------------------------------~gsf~~p~~V~v~k~dg~~~ii~aKnIi  178 (506)
T KOG1335|consen  151 ----------------------------------------------------FGSFLDPNKVSVKKIDGEDQIIKAKNII  178 (506)
T ss_pred             ----------------------------------------------------eEeecCCceEEEeccCCCceEEeeeeEE
Confidence                                                                2234444445555555555678899999


Q ss_pred             EccCCCCCCCCCCCCCCcceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHH
Q psy14927        891 IATGSEVTPFPGIEVDEETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQ  953 (1074)
Q Consensus       891 IATG~~p~~ipgi~~~~~~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~  953 (1074)
                      |||||.-.++||+.-+...+++++..+.+..                 +..+.++|.+||+++..+.+. +.+|++++..
T Consensus       179 iATGSeV~~~PGI~IDekkIVSStgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~-~~mD~Eisk~  257 (506)
T KOG1335|consen  179 IATGSEVTPFPGITIDEKKIVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIG-GVMDGEISKA  257 (506)
T ss_pred             EEeCCccCCCCCeEecCceEEecCCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhc-cccCHHHHHH
Confidence            9999976689999989999999999998887                 888899999999999999999 6799999999


Q ss_pred             HHHHHHhCCCEEEeCceEEEEEecCC-eEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeee
Q psy14927        954 FQRILGKQGMQFKLGTKVTGASKSGD-NITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPV 1032 (1074)
Q Consensus       954 ~~~~l~~~gV~i~~~~~v~~i~~~~~-~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~V 1032 (1074)
                      +.+.|.+.|++|.+++++..++.+++ .+.|++.+.. +++..+++||.+++++|++|.+..|++++.|++.|..|+|.|
T Consensus       258 ~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak-~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v  336 (506)
T KOG1335|consen  258 FQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAK-TGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIV  336 (506)
T ss_pred             HHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecC-CCceeEEEeeEEEEEccCcccccCCChhhcccccccccceec
Confidence            99999999999999999999998877 5888888877 788899999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHhhCC
Q psy14927       1033 NSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1033 d~~~~ts~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      |..++|.+|+||+|||++.+|++++.|..+|-.+...|.+.
T Consensus       337 ~~~f~t~vP~i~~IGDv~~gpMLAhkAeeegI~~VE~i~g~  377 (506)
T KOG1335|consen  337 NTRFQTKVPHIYAIGDVTLGPMLAHKAEEEGIAAVEGIAGG  377 (506)
T ss_pred             cccccccCCceEEecccCCcchhhhhhhhhchhheeeeccc
Confidence            99999999999999999999999999999999999888763

>KOG3616|consensus

Probab=100.00  E-value=1.2e-34  Score=323.96  Aligned_cols=561  Identities=17%  Similarity=0.139  Sum_probs=395.4

Q ss_pred             hhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHh
Q psy14927          7 MKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVL   86 (1074)
Q Consensus         7 ~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l   86 (1074)
                      -+++..++|+-||+..+.||..+ .        +.+-...+.-.+|.+-|-+|+..+||-+.|.+.-+.-||-.+++.+|
T Consensus       555 leqn~te~aigmy~~lhkwde~i-~--------lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk~sdgd~laaiqly  625 (1636)
T KOG3616|consen  555 LEQNATEEAIGMYQELHKWDEAI-A--------LAEAKGHPALEKLKRSYLQALMDTGQDEKAAELKESDGDGLAAIQLY  625 (1636)
T ss_pred             HhcccHHHHHHHHHHHHhHHHHH-H--------HHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhccccCccHHHHHHH
Confidence            34567888888888888777322 1        12222233336789999999999999999999999999999999999


Q ss_pred             hccCCHHHHHHHHHh----cCChHHHHHHH-------------HHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHH
Q psy14927         87 CFLQDFSRAAELANA----SGDTAAAYHLA-------------RQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQ  149 (1074)
Q Consensus        87 ~~~~~~~~a~~i~~~----~~~~~~~~~la-------------~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~  149 (1074)
                      .+.|.|.+|.+.+..    ..+.....+++             ..|++..|++.|+++|.+...|..||+||+-.     
T Consensus       626 ika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfa-----  700 (1636)
T KOG3616|consen  626 IKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFA-----  700 (1636)
T ss_pred             HHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhh-----
Confidence            999999999988863    23333333333             56666667789999999999999999888755     


Q ss_pred             HHHHhhhcCchhHHHHHHHHcc-CChhHHHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhh
Q psy14927        150 LWNLALSAGPSEQIEAATYLET-IEPDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAG  228 (1074)
Q Consensus       150 ~~~l~~~~~~~~~~~~A~~~e~-~~~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~  228 (1074)
                          .|.........|+.+++. ++++.|+++|..|+...||++.++.                    ...|.|+|-+..
T Consensus       701 ----fp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~--------------------akew~kai~ild  756 (1636)
T KOG3616|consen  701 ----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIG--------------------AKEWKKAISILD  756 (1636)
T ss_pred             ----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhh--------------------hhhhhhhHhHHH
Confidence                233333444579999999 8899999999999999999999987                    334444444443


Q ss_pred             hcchHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHH--HhHHHHhhcCHHHHHHHHHHHHHHHHhc
Q psy14927        229 VSRMKEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSC--AQVEIDEFGNYEKGLGALNEAKRCLLKH  306 (1074)
Q Consensus       229 ~~r~~~l~~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~--a~~ei~e~~~y~~a~~~l~~a~~~l~~~  306 (1074)
                      ...+               .....+.+-.|..+|.-.+.|+.|...|...  -...|++||.-.+|.++.+-+-++....
T Consensus       757 niqd---------------qk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~~~e  821 (1636)
T KOG3616|consen  757 NIQD---------------QKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECHGPE  821 (1636)
T ss_pred             Hhhh---------------hccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhcCch
Confidence            3222               2223344444555555555555555555444  3446899999999999988877766543


Q ss_pred             CC-----CchHHHHHHHHHHH-HHHHHhhcCChHHHhhHHHHHHHHHhhccCcchhHHHHHHHHHHHHHhhhhhcccccc
Q psy14927        307 ND-----SMYETLKSSVVEKL-AEVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKIAEVDKYLEMKRNQS  380 (1074)
Q Consensus       307 ~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  380 (1074)
                      ..     ...++|........ +.+||. +|++++||.||.++...     +.|+|++..+..+++              
T Consensus       822 ~t~~~yiakaedldehgkf~eaeqlyit-i~~p~~aiqmydk~~~~-----ddmirlv~k~h~d~l--------------  881 (1636)
T KOG3616|consen  822 ATISLYIAKAEDLDEHGKFAEAEQLYIT-IGEPDKAIQMYDKHGLD-----DDMIRLVEKHHGDHL--------------  881 (1636)
T ss_pred             hHHHHHHHhHHhHHhhcchhhhhheeEE-ccCchHHHHHHHhhCcc-----hHHHHHHHHhChhhh--------------
Confidence            22     55667777777765 899999 79999999999999999     999999999888888              


Q ss_pred             ccccCCceEEeccchhhccHHHHhccccccccccccccccccccccCCcceEEEEeccCCCcccccccccCCCcEEE---
Q psy14927        381 FRSSNTDIILPVEKWTLLSLARVLEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPGIEYKV---  457 (1074)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~v---  457 (1074)
                                                                               .+||+.+|.++.+.| +...   
T Consensus       882 ---------------------------------------------------------~dt~~~f~~e~e~~g-~lkaae~  903 (1636)
T KOG3616|consen  882 ---------------------------------------------------------HDTHKHFAKELEAEG-DLKAAEE  903 (1636)
T ss_pred             ---------------------------------------------------------hHHHHHHHHHHHhcc-ChhHHHH
Confidence                                                                     556666777777777 2222   


Q ss_pred             EeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHHhhhcccCCcccccccccc
Q psy14927        458 GKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEKNDTL  537 (1074)
Q Consensus       458 ~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l~~~~~~hPt~s~e~~~~~  537 (1074)
                      +......+..++.|....++|                        -..+..|                         .+-
T Consensus       904 ~flea~d~kaavnmyk~s~lw------------------------~dayria-------------------------kte  934 (1636)
T KOG3616|consen  904 HFLEAGDFKAAVNMYKASELW------------------------EDAYRIA-------------------------KTE  934 (1636)
T ss_pred             HHHhhhhHHHHHHHhhhhhhH------------------------HHHHHHH-------------------------hcc
Confidence            222233444444444322222                        0011111                         111


Q ss_pred             CCcccccCCCchHHHhhcchhhHHhccCccccCCeeccCcccCHHHHHHHHHHHHHHHHHH--HHHHhhhCccchhhHHH
Q psy14927        538 GGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGTKSAAVKALTGG--IAHLFKSNKALKIITKQ  615 (1074)
Q Consensus       538 ggtc~n~GCvpkk~l~~aa~~~~~~~~~~a~~~G~~~~~~~~~w~~~~~~~~~~i~~l~~~--~~~~l~~~~i~~~~~~~  615 (1074)
                      ||                +.+..+..               +-|++-.. .+.-|+.||+.  +....+-.-=.-+|.-|
T Consensus       935 gg----------------~n~~k~v~---------------flwaksig-gdaavkllnk~gll~~~id~a~d~~afd~a  982 (1636)
T KOG3616|consen  935 GG----------------ANAEKHVA---------------FLWAKSIG-GDAAVKLLNKHGLLEAAIDFAADNCAFDFA  982 (1636)
T ss_pred             cc----------------ccHHHHHH---------------HHHHHhhC-cHHHHHHHHhhhhHHHHhhhhhcccchhhH
Confidence            11                11111111               23332111 14555566532  11111111111237778


Q ss_pred             HHHHhhh----hHHHHHHHHHHHHhhhcHHHHHHHHHHh-------------------------h-CHHHHHHHHHHcCC
Q psy14927        616 IILILII----YRVLLKWWAQYIESTEDMDLAMKYYEEA-------------------------R-DYLSMVRVLCFLQD  665 (1074)
Q Consensus       616 ~~~~~~~----~~~l~~~~a~~~e~~~~~~~A~~~y~~a-------------------------g-~~~~ai~~~~~~~~  665 (1074)
                      |+|+|+.    -|+++..+|.|++++|+|++|-+||.+|                         | +|+.||+|++|.+|
T Consensus       983 fdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dnd 1062 (1636)
T KOG3616|consen  983 FDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDND 1062 (1636)
T ss_pred             HHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHhhhccc
Confidence            8888877    4589999999999999999997777654                         5 99999999999999


Q ss_pred             HHHHHHHHHhcCCcHHHHHH---HHHHHhcCCHHHHHHHHHHcCCHHHHHHH---hccHHHHHHHHHHhCCcccHHHHHH
Q psy14927        666 FSRAAELANASGDTAAAYHL---ARQYENSGQFDEAIHFYSVAGSCGNAVRL---CGQLDAVESIASELNVQSDQDLILK  739 (1074)
Q Consensus       666 ~~~a~~v~~~~~~~~~~~~~---A~~~~~~g~~~~A~~~~~kag~~~~Av~m---a~~w~~a~~~A~~~~~~~~~~~~~~  739 (1074)
                      |..|.+|++.|.+...+..+   |+--...|+|..|+-++++|++|.-+++.   ++.|.+|.|+|+.++|.....+.-.
T Consensus      1063 wa~aervae~h~~~~l~dv~tgqar~aiee~d~~kae~fllrankp~i~l~yf~e~~lw~dalri~kdylp~q~a~iqee 1142 (1636)
T KOG3616|consen 1063 WAAAERVAEAHCEDLLADVLTGQARGAIEEGDFLKAEGFLLRANKPDIALNYFIEAELWPDALRIAKDYLPHQAAAIQEE 1142 (1636)
T ss_pred             HHHHHHHHHhhChhhhHHHHhhhhhccccccchhhhhhheeecCCCchHHHHHHHhccChHHHHHHHhhChhHHHHHHHH
Confidence            99999999999988877744   88888899999999999999999999998   8999999999999999877666555


Q ss_pred             HHHHHHHcCC-----HHHHHHHHHHhCCHHHHHHHHHHcCCCCch
Q psy14927        740 CASYFARREH-----HDRAVQMYAIARRYDQALSLIQTKHVPLSE  779 (1074)
Q Consensus       740 ~a~~~~~~~~-----~~~Ai~~y~~ag~~~~Ai~~~~~~~~~~~~  779 (1074)
                      +-+.-++.|-     +..-.+-|+.+|+|..|+..+++...+.+.
T Consensus      1143 yek~~~k~gargvd~fvaqak~weq~gd~rkav~~~lkinrdst~ 1187 (1636)
T KOG3616|consen 1143 YEKEALKKGARGVDGFVAQAKEWEQAGDWRKAVDALLKINRDSTD 1187 (1636)
T ss_pred             HHHHHHhccccccHHHHHHHHHHHhcccHHHHHHHHhhhccCCCC
Confidence            6555554443     234457788889999999888888776543

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=1.1e-32  Score=327.99  Aligned_cols=275  Identities=39%  Similarity=0.528  Sum_probs=226.4

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhcccccccc------------------------------------chhhh
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL------------------------------------NLETM  833 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~------------------------------------~~~~~  833 (1074)
                      .+|+||||||+|+.||..+++     +++|+.+..||..                                    +|..+
T Consensus         5 ~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~   84 (471)
T PRK06467          5 TQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDIDKM   84 (471)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHHHH
Confidence            459999999999999999999     7888765555521                                    11222


Q ss_pred             hhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcceech
Q psy14927        834 MGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSS  913 (1074)
Q Consensus       834 ~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t~  913 (1074)
                      ..++....+.+...+...++..||+++.|++++++++.+.|...+|+..++.||+||||||++|..+|++++....++++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~~~~v~~~  164 (471)
T PRK06467         85 RARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDDPRIWDS  164 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCCCCCcEECh
Confidence            22222233333344556677889999999999999988888776764467999999999999997667776666678888


Q ss_pred             hhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEe
Q psy14927        914 TGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASK  976 (1074)
Q Consensus       914 ~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~  976 (1074)
                      .+.+.+..                 |..|.++|.+||++++.++++ +.+++++++.+.+.|++. |++++++.+++++.
T Consensus       165 ~~~~~~~~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il-~~~d~~~~~~~~~~l~~~-v~i~~~~~v~~i~~  242 (471)
T PRK06467        165 TDALELKEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI-PAADKDIVKVFTKRIKKQ-FNIMLETKVTAVEA  242 (471)
T ss_pred             HHhhccccCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC-CcCCHHHHHHHHHHHhhc-eEEEcCCEEEEEEE
Confidence            88776654                 888899999999999999999 789999999999999988 99999999999987


Q ss_pred             cCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcH
Q psy14927        977 SGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLA 1056 (1074)
Q Consensus       977 ~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~ 1056 (1074)
                      .++++.+++.+.  +++..++++|.||+++|++||++++.+...|++++++|+|.||++++|++|||||+|||++.|.++
T Consensus       243 ~~~~~~v~~~~~--~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t~~p~VyAiGDv~~~~~la  320 (471)
T PRK06467        243 KEDGIYVTMEGK--KAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVPHIFAIGDIVGQPMLA  320 (471)
T ss_pred             cCCEEEEEEEeC--CCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCcccCCCCEEEehhhcCCcccH
Confidence            666666666541  133467999999999999999998767889999999999999999999999999999999988899


Q ss_pred             HHHHHHHHHHHHHhhCC
Q psy14927       1057 HKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1057 ~~A~~~G~~aA~~I~~~ 1073 (1074)
                      +.|..+|+.+|.+|++.
T Consensus       321 ~~A~~eG~~aa~~i~g~  337 (471)
T PRK06467        321 HKGVHEGHVAAEVIAGK  337 (471)
T ss_pred             HHHHHHHHHHHHHHcCC
Confidence            99999999999999874

>KOG4716|consensus

Probab=100.00  E-value=1.9e-33  Score=293.64  Aligned_cols=323  Identities=24%  Similarity=0.408  Sum_probs=262.8

Q ss_pred             EEEEeCCChhHHHHHHHHHHHcCCCHHHHhhhcccCCccccccccccCCcccccCCCchHHHhhcchhhHHhccCccccC
Q psy14927        491 GVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKAR  570 (1074)
Q Consensus       491 G~~iiG~~a~eli~~~a~a~~~~~~~~~l~~~~~~hPt~s~e~~~~~ggtc~n~GCvpkk~l~~aa~~~~~~~~~~a~~~  570 (1074)
                      ...++|.+++.|. .+..|...|.++.-|..+.   ||..-- .|.+||||+|+||||||+|.+|+-+-+..+  |+..|
T Consensus        21 DLIviGgGSgGLa-caKeAa~~G~kV~~lDfV~---PtP~Gt-sWGlGGTCvNVGCIPKKLMHQAallG~al~--da~ky   93 (503)
T KOG4716|consen   21 DLIVIGGGSGGLA-CAKEAADLGAKVACLDFVK---PTPQGT-SWGLGGTCVNVGCIPKKLMHQAALLGEALH--DARKY   93 (503)
T ss_pred             cEEEEcCCcchhh-HHHHHHhcCCcEEEEeecc---cCCCCC-ccccCceeeecccccHHHHHHHHHHHHHHH--HHHhh
Confidence            3567899999988 7888889999887665443   222222 489999999999999997777776555544  58999


Q ss_pred             CeeccC--cccCHHHHHHHHHHHHHHHHHHHHHHhhhCccchhhHHHHHHHhhhhHHHHHHHHHHHHhhhcHHHHHHHHH
Q psy14927        571 GIEVEG--VKLNLETMMGTKSAAVKALTGGIAHLFKSNKALKIITKQIILILIIYRVLLKWWAQYIESTEDMDLAMKYYE  648 (1074)
Q Consensus       571 G~~~~~--~~~~w~~~~~~~~~~i~~l~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~  648 (1074)
                      ||.+.+  +++||..|.+..+++|..+||+|+-.|+++.|.                +++.+|+|.+             
T Consensus        94 GW~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~----------------Y~NsygeFv~-------------  144 (503)
T KOG4716|consen   94 GWNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVE----------------YINSYGEFVD-------------  144 (503)
T ss_pred             CCCCccccccccHHHHHHHHHHHhhhccceEEEEeccceee----------------eeecceeecc-------------
Confidence            999886  789999999999999999999998777777777                3333333332             


Q ss_pred             HhhCHHHHHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHHHhcCCHHHHHHHHHHcCCHHHHHHHhccHHHHHHHHHHh
Q psy14927        649 EARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCGQLDAVESIASEL  728 (1074)
Q Consensus       649 ~ag~~~~ai~~~~~~~~~~~a~~v~~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~kag~~~~Av~ma~~w~~a~~~A~~~  728 (1074)
                                                                                                      
T Consensus       145 --------------------------------------------------------------------------------  144 (503)
T KOG4716|consen  145 --------------------------------------------------------------------------------  144 (503)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHcCCCCchhhhhcCCCCCCCccchhhhhhccccchHH
Q psy14927        729 NVQSDQDLILKCASYFARREHHDRAVQMYAIARRYDQALSLIQTKHVPLSEELADLLVPPESDDQRQVVLNTLGNCAAVQ  808 (1074)
Q Consensus       729 ~~~~~~~~~~~~a~~~~~~~~~~~Ai~~y~~ag~~~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~k~~VviiGgG~AGl~  808 (1074)
                                                                                                      
T Consensus       145 --------------------------------------------------------------------------------  144 (503)
T KOG4716|consen  145 --------------------------------------------------------------------------------  144 (503)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhhhhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCe
Q psy14927        809 ANYHLATKLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKN  888 (1074)
Q Consensus       809 aA~~la~~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~  888 (1074)
                                                                                  ++.+..+..+|.++.++++.
T Consensus       145 ------------------------------------------------------------~h~I~at~~~gk~~~~ta~~  164 (503)
T KOG4716|consen  145 ------------------------------------------------------------PHKIKATNKKGKERFLTAEN  164 (503)
T ss_pred             ------------------------------------------------------------cceEEEecCCCceEEeecce
Confidence                                                                        22333333333335688999


Q ss_pred             EEEccCCCCCCCCCCCCCCcceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHH
Q psy14927        889 ILIATGSEVTPFPGIEVDEETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVA  951 (1074)
Q Consensus       889 lIIATG~~p~~ipgi~~~~~~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~  951 (1074)
                      +|||||.+| ..|++|+..+..+|++|++.+..                 |.+|.-+|.+||+..|+-.+  ++||.++.
T Consensus       165 fvIatG~RP-rYp~IpG~~Ey~ITSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~L--rGFDqdma  241 (503)
T KOG4716|consen  165 FVIATGLRP-RYPDIPGAKEYGITSDDLFSLPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILL--RGFDQDMA  241 (503)
T ss_pred             EEEEecCCC-CCCCCCCceeeeecccccccccCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEEeec--ccccHHHH
Confidence            999999998 47788888999999999998776                 89999999999999887544  68999999


Q ss_pred             HHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCC-CCC
Q psy14927        952 KQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDE-KGR 1029 (1074)
Q Consensus       952 ~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~-~G~ 1029 (1074)
                      +.+.+.|++.||+|...+.+..|+.-+++ ..|...++. ++++-+-++|+|+||+|+.+.++-++++..|++.|+ .|.
T Consensus       242 e~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~v~~k~t~-t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~K  320 (503)
T KOG4716|consen  242 ELVAEHMEERGIKFLRKTVPERVEQIDDGKLRVFYKNTN-TGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGK  320 (503)
T ss_pred             HHHHHHHHHhCCceeecccceeeeeccCCcEEEEeeccc-ccccccchhhhhhhhhccccchhhcCCCccceeecccCCc
Confidence            99999999999999999888888865544 566666644 555667789999999999999999999999999965 689


Q ss_pred             eeeCCCCCCCCCCEEEecccCC-CCCcHHHHHHHHHHHHHHhhCC
Q psy14927       1030 VPVNSRFQTVIPNIFAIGDCIH-GPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1030 I~Vd~~~~ts~~~IyAiGD~~~-~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      |.||+.-+|++|+|||+||+.. .|.+...|++.|+..|+.+++.
T Consensus       321 I~v~~~e~t~vp~vyAvGDIl~~kpELTPvAIqsGrlLa~Rlf~g  365 (503)
T KOG4716|consen  321 IPVDDEEATNVPYVYAVGDILEDKPELTPVAIQSGRLLARRLFAG  365 (503)
T ss_pred             cccChHHhcCCCceEEecceecCCcccchhhhhhchHHHHHHhcC
Confidence            9999999999999999999986 5789999999999999999863

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=5.1e-32  Score=322.18  Aligned_cols=276  Identities=45%  Similarity=0.737  Sum_probs=221.9

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhcccccccc-chhh------------------------------------
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL-NLET------------------------------------  832 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~-~~~~------------------------------------  832 (1074)
                      .+|+||||||||+.||+.+++     +++|+.+..||.. +..-                                    
T Consensus         4 ~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~   83 (466)
T PRK06115          4 YDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNLAQ   83 (466)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCHHH
Confidence            359999999999999999998     7888755666642 1110                                    


Q ss_pred             hhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcceec
Q psy14927        833 MMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVS  912 (1074)
Q Consensus       833 ~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t  912 (1074)
                      +..+.......+...+...++..||+++.|++.+.+++.+.|.+.+|+..+++||+||||||++|+++||++.++..+++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~ipg~~~~~~~~~~  163 (466)
T PRK06115         84 MMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTPLPGVTIDNQRIID  163 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCCCCCCCCCCCCeEEC
Confidence            01111111222223345566677999999998888888888877777545799999999999999878887655667788


Q ss_pred             hhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEE
Q psy14927        913 STGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGAS  975 (1074)
Q Consensus       913 ~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~  975 (1074)
                      +++++.+..                 |..+.++|.+||++++.++++ +.+++++...+.+.|++.||++++++.+.+++
T Consensus       164 ~~~~~~~~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il-~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~  242 (466)
T PRK06115        164 STGALSLPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC-PGTDTETAKTLQKALTKQGMKFKLGSKVTGAT  242 (466)
T ss_pred             HHHHhCCccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC-CCCCHHHHHHHHHHHHhcCCEEEECcEEEEEE
Confidence            888776432                 788899999999999999998 78999999999999999999999999999998


Q ss_pred             ecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCc
Q psy14927        976 KSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPML 1055 (1074)
Q Consensus       976 ~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~ 1055 (1074)
                      ++++++.+++.+.. +|+++++++|.||+++|++||++.++++..|++++++| +.||++++|++|||||+|||++.|++
T Consensus       243 ~~~~~v~v~~~~~~-~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G-~~vd~~~~Ts~~~IyA~GD~~~~~~l  320 (466)
T PRK06115        243 AGADGVSLTLEPAA-GGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRG-MLANDHHRTSVPGVWVIGDVTSGPML  320 (466)
T ss_pred             EcCCeEEEEEEEcC-CCceeEEEeCEEEEccCCccccccCCcccccceeCCCC-EEECCCeecCCCCEEEeeecCCCccc
Confidence            76566666655322 24467899999999999999999877778889888877 67899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhCC
Q psy14927       1056 AHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1056 ~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      ++.|..+|+.+|+||++.
T Consensus       321 a~~A~~~g~~aa~~i~~~  338 (466)
T PRK06115        321 AHKAEDEAVACIERIAGK  338 (466)
T ss_pred             HHHHHHHHHHHHHHHcCC
Confidence            999999999999999874

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=1.3e-31  Score=319.70  Aligned_cols=272  Identities=41%  Similarity=0.635  Sum_probs=222.2

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhcccccccc-c-----------------------------------hhhh
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL-N-----------------------------------LETM  833 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~-~-----------------------------------~~~~  833 (1074)
                      .+|+||||||||++||..+++     .++|+.. .||.. +                                   |..+
T Consensus         5 yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   83 (462)
T PRK06416          5 YDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFKKV   83 (462)
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHHHH
Confidence            459999999999999999998     6788765 55422 1                                   1122


Q ss_pred             hhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcceech
Q psy14927        834 MGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSS  913 (1074)
Q Consensus       834 ~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t~  913 (1074)
                      ..+.+...+.+...+...+++.||+++.|++++++++.+.|...+|. .++.||+||||||++|..+||++..+..++++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~-~~~~~d~lViAtGs~p~~~pg~~~~~~~v~~~  162 (462)
T PRK06416         84 QEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGE-QTYTAKNIILATGSRPRELPGIEIDGRVIWTS  162 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCc-EEEEeCEEEEeCCCCCCCCCCCCCCCCeEEcc
Confidence            22222222333334566777889999999999999988888754432 57999999999999997778876555567788


Q ss_pred             hhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEe
Q psy14927        914 TGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASK  976 (1074)
Q Consensus       914 ~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~  976 (1074)
                      ++.+.+..                 |..|++.|.+||++++.++++ +.+++++...+.+.|++.||++++++.|.++++
T Consensus       163 ~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~  241 (462)
T PRK06416        163 DEALNLDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL-PGEDKEISKLAERALKKRGIKIKTGAKAKKVEQ  241 (462)
T ss_pred             hHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC-CcCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEE
Confidence            87765443                 788889999999999999998 789999999999999999999999999999998


Q ss_pred             cCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcH
Q psy14927        977 SGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLA 1056 (1074)
Q Consensus       977 ~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~ 1056 (1074)
                      +++++.+.+.+   +++.+++++|.||+++|++|++.+++++..|++++ +|+|.||++++|+.|+|||+|||+..++++
T Consensus       242 ~~~~v~v~~~~---gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~  317 (462)
T PRK06416        242 TDDGVTVTLED---GGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIEVDEQLRTNVPNIYAIGDIVGGPMLA  317 (462)
T ss_pred             eCCEEEEEEEe---CCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec-CCEEeECCCCccCCCCEEEeeecCCCcchH
Confidence            76666666554   23346799999999999999999877788899998 899999999999999999999999888899


Q ss_pred             HHHHHHHHHHHHHhhCC
Q psy14927       1057 HKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1057 ~~A~~~G~~aA~~I~~~ 1073 (1074)
                      ..|..||+.+|.||++.
T Consensus       318 ~~A~~~g~~aa~ni~~~  334 (462)
T PRK06416        318 HKASAEGIIAAEAIAGN  334 (462)
T ss_pred             HHHHHHHHHHHHHHcCC
Confidence            99999999999999874

>TIGR03452 mycothione_red mycothione reductase

Probab=100.00  E-value=5.2e-31  Score=312.05  Aligned_cols=207  Identities=29%  Similarity=0.466  Sum_probs=173.6

Q ss_pred             CCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcceechhhHhcchH-------------
Q psy14927        855 NKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK-------------  921 (1074)
Q Consensus       855 ~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t~~~~~~~~~-------------  921 (1074)
                      .||+++.|+++++++..+.  +.+|  .+++||+||||||++|..+|+++.....++++++++.+..             
T Consensus       105 ~gv~~~~g~~~~~~~~~V~--~~~g--~~~~~d~lIiATGs~p~~p~~~~~~~~~~~~~~~~~~l~~~~k~vvVIGgG~i  180 (452)
T TIGR03452       105 PNIDVYDGHARFVGPRTLR--TGDG--EEITGDQIVIAAGSRPYIPPAIADSGVRYHTNEDIMRLPELPESLVIVGGGYI  180 (452)
T ss_pred             CCeEEEEEEEEEecCCEEE--ECCC--cEEEeCEEEEEECCCCCCCCCCCCCCCEEEcHHHHHhhhhcCCcEEEECCCHH
Confidence            4888999988877765544  4566  5799999999999998644544444445778888876653             


Q ss_pred             ----hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEE
Q psy14927        922 ----GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEEL  997 (1074)
Q Consensus       922 ----A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i  997 (1074)
                          |..|.++|.+||++++.+.++ +.+++++...+.+.+ +.||++++++.|.+++.+++++.+++.+      ++++
T Consensus       181 g~E~A~~l~~~G~~Vtli~~~~~ll-~~~d~~~~~~l~~~~-~~gI~i~~~~~V~~i~~~~~~v~v~~~~------g~~i  252 (452)
T TIGR03452       181 AAEFAHVFSALGTRVTIVNRSTKLL-RHLDEDISDRFTEIA-KKKWDIRLGRNVTAVEQDGDGVTLTLDD------GSTV  252 (452)
T ss_pred             HHHHHHHHHhCCCcEEEEEccCccc-cccCHHHHHHHHHHH-hcCCEEEeCCEEEEEEEcCCeEEEEEcC------CCEE
Confidence                888899999999999999988 778999988887655 4689999999999998766665565533      3479


Q ss_pred             EcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHhhCC
Q psy14927        998 SCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus       998 ~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      ++|.|++++|++|++++++++..|++++++|+|.||++++|++|||||+|||++.+++++.|..||+++|+||++.
T Consensus       253 ~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~  328 (452)
T TIGR03452       253 TADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRTSARGVWALGDVSSPYQLKHVANAEARVVKHNLLHP  328 (452)
T ss_pred             EcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCcccCCCCEEEeecccCcccChhHHHHHHHHHHHHhcCC
Confidence            9999999999999999877788899999999999999999999999999999998889999999999999999874

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=100.00  E-value=2.4e-31  Score=317.44  Aligned_cols=272  Identities=25%  Similarity=0.391  Sum_probs=221.6

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhh-hh----------------------------------
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLET-MM----------------------------------  834 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~-~~----------------------------------  834 (1074)
                      .+|+||||||+|+.||+.+++     +++|+.+..||...... +|                                  
T Consensus         6 yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   85 (461)
T PRK05249          6 YDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFADL   85 (461)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCHHHH
Confidence            459999999999999999998     78888766666431111 11                                  


Q ss_pred             -hhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcceech
Q psy14927        835 -GTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSS  913 (1074)
Q Consensus       835 -~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t~  913 (1074)
                       .+.....+.+...+..++.+.||+++.|++.+++++.++|...+|...++.||+||||||++|..+|..+.....++++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~~~~~~~~v~~~  165 (461)
T PRK05249         86 LARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPDVDFDHPRIYDS  165 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCCCeEEcH
Confidence             0111111122233556677889999999999999999888887775457999999999999985444444445667888


Q ss_pred             hhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEe
Q psy14927        914 TGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASK  976 (1074)
Q Consensus       914 ~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~  976 (1074)
                      ++++....                 |..|++.|.+||++++.++++ +.+++++...+.+.|++.||++++++.++++..
T Consensus       166 ~~~~~~~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-~~~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~  244 (461)
T PRK05249        166 DSILSLDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL-SFLDDEISDALSYHLRDSGVTIRHNEEVEKVEG  244 (461)
T ss_pred             HHhhchhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-CcCCHHHHHHHHHHHHHcCCEEEECCEEEEEEE
Confidence            77766543                 888899999999999999998 789999999999999999999999999999987


Q ss_pred             cCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcH
Q psy14927        977 SGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLA 1056 (1074)
Q Consensus       977 ~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~ 1056 (1074)
                      +++++.+++.+      +.++++|.||+|+|++||++.+.++..|++++++|+|.||++++|+.|||||+|||++.|+++
T Consensus       245 ~~~~~~v~~~~------g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyAiGD~~~~~~~~  318 (461)
T PRK05249        245 GDDGVIVHLKS------GKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAVPHIYAVGDVIGFPSLA  318 (461)
T ss_pred             eCCeEEEEECC------CCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCcccCCCCEEEeeecCCCcccH
Confidence            66666565443      347999999999999999998767889999999999999999999999999999999988899


Q ss_pred             HHHHHHHHHHHHHhhCC
Q psy14927       1057 HKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1057 ~~A~~~G~~aA~~I~~~ 1073 (1074)
                      +.|..+|+.||.||+|.
T Consensus       319 ~~A~~~g~~aa~~i~g~  335 (461)
T PRK05249        319 SASMDQGRIAAQHAVGE  335 (461)
T ss_pred             hHHHHHHHHHHHHHcCC
Confidence            99999999999999874

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=100.00  E-value=4e-31  Score=313.30  Aligned_cols=266  Identities=28%  Similarity=0.423  Sum_probs=216.6

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhcccccccc------------------------------------chhhh
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL------------------------------------NLETM  833 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~------------------------------------~~~~~  833 (1074)
                      .+|+||||||||++||+.+++     +++|+. ..||..                                    +|..+
T Consensus         3 yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~   81 (446)
T TIGR01424         3 YDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKKL   81 (446)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHHH
Confidence            359999999999999999999     677763 445432                                    22333


Q ss_pred             hhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcceech
Q psy14927        834 MGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSS  913 (1074)
Q Consensus       834 ~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t~  913 (1074)
                      ..+.......+...+...+.+.||+++.|+++.++++.+.+. .+|  .++.||+||||||++|. .|.+++.. ..+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~-~~g--~~~~~d~lIiATGs~p~-~p~i~G~~-~~~~~  156 (446)
T TIGR01424        82 LQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVL-QDG--TTYTAKKILIAVGGRPQ-KPNLPGHE-LGITS  156 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEe-cCC--eEEEcCEEEEecCCcCC-CCCCCCcc-ceech
Confidence            333344445566667788888999999999999999877764 345  57999999999999984 23343322 34566


Q ss_pred             hhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEe
Q psy14927        914 TGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASK  976 (1074)
Q Consensus       914 ~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~  976 (1074)
                      ++.+.+..                 |..+.++|.+||++++.+.++ +.+++++...+.+.|++.||++++++.+.++..
T Consensus       157 ~~~~~l~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~  235 (446)
T TIGR01424       157 NEAFHLPTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL-RGFDDDMRALLARNMEGRGIRIHPQTSLTSITK  235 (446)
T ss_pred             HHhhcccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC-cccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEE
Confidence            66665332                 788889999999999999988 779999999999999999999999999999987


Q ss_pred             cCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcH
Q psy14927        977 SGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLA 1056 (1074)
Q Consensus       977 ~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~ 1056 (1074)
                      .++++.+++.+      +.++++|.||+|+|++|+++.++++..|++++++|+|.||+++||++|||||+|||++.++++
T Consensus       236 ~~~~~~v~~~~------g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~l~  309 (446)
T TIGR01424       236 TDDGLKVTLSH------GEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRTSIPSIYAVGDVTDRINLT  309 (446)
T ss_pred             cCCeEEEEEcC------CcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCccCCCCEEEeeccCCCccch
Confidence            65565565543      457999999999999999998777889999999999999999999999999999999988899


Q ss_pred             HHHHHHHHHHHHHhhCC
Q psy14927       1057 HKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1057 ~~A~~~G~~aA~~I~~~ 1073 (1074)
                      +.|..+|+++|.||++.
T Consensus       310 ~~A~~~g~~~a~~i~~~  326 (446)
T TIGR01424       310 PVAIMEATCFANTEFGN  326 (446)
T ss_pred             hHHHHHHHHHHHHHhcC
Confidence            99999999999999973

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PLN02507 glutathione reductase

Probab=99.98  E-value=5.3e-31  Score=314.65  Aligned_cols=271  Identities=31%  Similarity=0.416  Sum_probs=217.1

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhh---------cccccccc-c-----------------------------
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQ---------AGDKGVKL-N-----------------------------  829 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~---------~~~~g~~~-~-----------------------------  829 (1074)
                      +.+|+||||||+|+.||..+++     .++|+         .+..||.. +                             
T Consensus        25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~~~  104 (499)
T PLN02507         25 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGWEI  104 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCccc
Confidence            4569999999999999999998     67884         23344432 1                             


Q ss_pred             -------hhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCC
Q psy14927        830 -------LETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPG  902 (1074)
Q Consensus       830 -------~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipg  902 (1074)
                             |..+..........+...+...+...||+++.|+++++|++.+.|++.+|+..++.||+||||||++|.. |.
T Consensus       105 ~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p~~-p~  183 (499)
T PLN02507        105 NEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQR-PN  183 (499)
T ss_pred             CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCCCC-CC
Confidence                   1111222222223333445566777899999999999999999999888855579999999999999842 22


Q ss_pred             CCCCCcceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEE
Q psy14927        903 IEVDEETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQF  965 (1074)
Q Consensus       903 i~~~~~~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i  965 (1074)
                      +++. ...+++++++.+..                 |..+..+|.+|||+++.++++ +.+++++...+.+.|++.||++
T Consensus       184 ipG~-~~~~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l-~~~d~~~~~~l~~~l~~~GI~i  261 (499)
T PLN02507        184 IPGK-ELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL-RGFDDEMRAVVARNLEGRGINL  261 (499)
T ss_pred             CCCc-cceechHHhhhhhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC-cccCHHHHHHHHHHHHhCCCEE
Confidence            3332 22456666655433                 788889999999999999888 7799999999999999999999


Q ss_pred             EeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEE
Q psy14927        966 KLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFA 1045 (1074)
Q Consensus       966 ~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyA 1045 (1074)
                      ++++.|++++.+++++.+.+.+      +.++++|.||+++|++||+++++++..|++++++|+|.||+++||++|||||
T Consensus       262 ~~~~~V~~i~~~~~~~~v~~~~------g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~Ts~p~IyA  335 (499)
T PLN02507        262 HPRTNLTQLTKTEGGIKVITDH------GEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSRTNIPSIWA  335 (499)
T ss_pred             EeCCEEEEEEEeCCeEEEEECC------CcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCCcCCCCCEEE
Confidence            9999999998765665555433      4579999999999999999987778899999999999999999999999999


Q ss_pred             ecccCCCCCcHHHHHHHHHHHHHHhhCC
Q psy14927       1046 IGDCIHGPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1046 iGD~~~~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      +|||++.+.+++.|..||+++|+||++.
T Consensus       336 iGDv~~~~~l~~~A~~qg~~aa~ni~g~  363 (499)
T PLN02507        336 IGDVTNRINLTPVALMEGTCFAKTVFGG  363 (499)
T ss_pred             eeEcCCCCccHHHHHHHHHHHHHHHcCC
Confidence            9999998889999999999999999863

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=99.98  E-value=6.1e-31  Score=311.28  Aligned_cols=265  Identities=26%  Similarity=0.339  Sum_probs=214.2

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccccccc-------------------------------------cchhh
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVK-------------------------------------LNLET  832 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~-------------------------------------~~~~~  832 (1074)
                      .+|+||||||+|+.||+.+++     +++|+.. .||.                                     ++|..
T Consensus         3 yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~   81 (450)
T TIGR01421         3 YDYLVIGGGSGGIASARRAAEHGAKALLVEAKK-LGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWPE   81 (450)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEecccc-cccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHHH
Confidence            459999999999999999998     6778743 4442                                     22333


Q ss_pred             hhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcceec
Q psy14927        833 MMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVS  912 (1074)
Q Consensus       833 ~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t  912 (1074)
                      +..++....+.+...+...+.+.||+++.|++.+.+++.+.+   +|  ..+.||+||||||++|..++++++.. ..++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v---~~--~~~~~d~vIiAtGs~p~~p~~i~g~~-~~~~  155 (450)
T TIGR01421        82 LKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEV---NG--RDYTAPHILIATGGKPSFPENIPGAE-LGTD  155 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE---CC--EEEEeCEEEEecCCCCCCCCCCCCCc-eeEc
Confidence            333344444455555777788889999999888777765544   44  57999999999999984332454432 3456


Q ss_pred             hhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEE
Q psy14927        913 STGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGAS  975 (1074)
Q Consensus       913 ~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~  975 (1074)
                      +++++.+..                 |..|.++|++||++++.++++ +.+++++.+.+.+.|++.||++++++.++++.
T Consensus       156 ~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il-~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~  234 (450)
T TIGR01421       156 SDGFFALEELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL-RSFDSMISETITEEYEKEGINVHKLSKPVKVE  234 (450)
T ss_pred             HHHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-cccCHHHHHHHHHHHHHcCCEEEcCCEEEEEE
Confidence            777666543                 888999999999999999998 78999999999999999999999999999998


Q ss_pred             ecCCe-EEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCC
Q psy14927        976 KSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPM 1054 (1074)
Q Consensus       976 ~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~ 1054 (1074)
                      +++++ +.+.+.+    | ...+++|.||+++|++||++++.++..|++++++|+|.||++++|++|||||+|||++.+.
T Consensus       235 ~~~~~~~~v~~~~----g-~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T~~p~IyAiGD~~~~~~  309 (450)
T TIGR01421       235 KTVEGKLVIHFED----G-KSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGIYALGDVVGKVE  309 (450)
T ss_pred             EeCCceEEEEECC----C-cEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcCCCCCEEEEEecCCCcc
Confidence            75443 4555543    3 2579999999999999999987778899999999999999999999999999999999888


Q ss_pred             cHHHHHHHHHHHHHHhhC
Q psy14927       1055 LAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus      1055 ~~~~A~~~G~~aA~~I~~ 1072 (1074)
                      +++.|..+|+.+|.||++
T Consensus       310 ~~~~A~~~g~~aa~~i~~  327 (450)
T TIGR01421       310 LTPVAIAAGRKLSERLFN  327 (450)
T ss_pred             cHHHHHHHHHHHHHHHhc
Confidence            999999999999999986

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=99.98  E-value=6.1e-31  Score=312.94  Aligned_cols=270  Identities=26%  Similarity=0.415  Sum_probs=219.5

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhcccccccc---------------------------------------chh
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL---------------------------------------NLE  831 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~---------------------------------------~~~  831 (1074)
                      +|+||||||+|+.+|..+++     +++++.. .||..                                       +|.
T Consensus         3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~   81 (466)
T PRK07845          3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDLP   81 (466)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCHH
Confidence            49999999999999999998     6777654 33311                                       122


Q ss_pred             hhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEE----ecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCC
Q psy14927        832 TMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKI----TGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDE  907 (1074)
Q Consensus       832 ~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~----id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~  907 (1074)
                      .+..+.....+.+...+.+.+.+.||+++.|++++    ++++.+.|.+.+|+..++.||+||||||++|..+|+.....
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~~  161 (466)
T PRK07845         82 AVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPTAEPDG  161 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCCCCCCCC
Confidence            22223333333334456677888999999999988    67788888777774447999999999999986566533334


Q ss_pred             cceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCce
Q psy14927        908 ETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTK  970 (1074)
Q Consensus       908 ~~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~  970 (1074)
                      ..++++.++.....                 |..|+++|++||++++.++++ +.+++++...+.+.|++.||++++++.
T Consensus       162 ~~v~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l-~~~d~~~~~~l~~~L~~~gV~i~~~~~  240 (466)
T PRK07845        162 ERILTWRQLYDLDELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVL-PGEDADAAEVLEEVFARRGMTVLKRSR  240 (466)
T ss_pred             ceEEeehhhhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCC-CCCCHHHHHHHHHHHHHCCcEEEcCCE
Confidence            56777777765432                 888899999999999999998 788999999999999999999999999


Q ss_pred             EEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccC
Q psy14927        971 VTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCI 1050 (1074)
Q Consensus       971 v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~ 1050 (1074)
                      +.+++.+++++.+.+.+      ++++++|.||+++|++||++.+.++.+|++++++|+|.||++++|++|||||+|||+
T Consensus       241 v~~v~~~~~~~~v~~~~------g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~Ts~~~IyA~GD~~  314 (466)
T PRK07845        241 AESVERTGDGVVVTLTD------GRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRTSVPGIYAAGDCT  314 (466)
T ss_pred             EEEEEEeCCEEEEEECC------CcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCcccCCCCEEEEeecc
Confidence            99998765666565543      357999999999999999998767889999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHhhCC
Q psy14927       1051 HGPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1051 ~~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      +.+++++.|..+|..|+.||++.
T Consensus       315 ~~~~l~~~A~~~g~~aa~~i~g~  337 (466)
T PRK07845        315 GVLPLASVAAMQGRIAMYHALGE  337 (466)
T ss_pred             CCccchhHHHHHHHHHHHHHcCC
Confidence            98889999999999999999974

>PRK06116 glutathione reductase; Validated

Probab=99.97  E-value=1.1e-30  Score=310.62  Aligned_cols=264  Identities=26%  Similarity=0.403  Sum_probs=212.3

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccccccc-------------------------------------cchhh
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVK-------------------------------------LNLET  832 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~-------------------------------------~~~~~  832 (1074)
                      .+|+||||||||++||+.+++     +++|+. ..||.                                     ++|..
T Consensus         5 ~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   83 (450)
T PRK06116          5 YDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDWAK   83 (450)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCHHH
Confidence            359999999999999999998     677764 44442                                     12222


Q ss_pred             hhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcceec
Q psy14927        833 MMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVS  912 (1074)
Q Consensus       833 ~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t  912 (1074)
                      +..+.......+...+...+.+.||+++.|+++++++..+++   +|  .++.||+||||||++|. +|.+++. ..+++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~~v~~---~g--~~~~~d~lViATGs~p~-~p~i~g~-~~~~~  156 (450)
T PRK06116         84 LIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEV---NG--ERYTADHILIATGGRPS-IPDIPGA-EYGIT  156 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE---CC--EEEEeCEEEEecCCCCC-CCCCCCc-ceeEc
Confidence            222222333444455666777889999999999998876555   55  57999999999999984 3334432 24667


Q ss_pred             hhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEE
Q psy14927        913 STGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGAS  975 (1074)
Q Consensus       913 ~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~  975 (1074)
                      +++++....                 |..|.++|.+||++++++.++ +.+++++...+.+.|++.||++++++.|.+++
T Consensus       157 ~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~  235 (450)
T PRK06116        157 SDGFFALEELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL-RGFDPDIRETLVEEMEKKGIRLHTNAVPKAVE  235 (450)
T ss_pred             hhHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc-cccCHHHHHHHHHHHHHCCcEEECCCEEEEEE
Confidence            776665442                 888889999999999999888 78999999999999999999999999999998


Q ss_pred             ecCCe-EEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCC
Q psy14927        976 KSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPM 1054 (1074)
Q Consensus       976 ~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~ 1054 (1074)
                      .++++ +.+.+.+      +.++++|.||+++|++|+++.+.+...|++++++|+|.||++++|++|||||+|||++.++
T Consensus       236 ~~~~g~~~v~~~~------g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~  309 (450)
T PRK06116        236 KNADGSLTLTLED------GETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGIYAVGDVTGRVE  309 (450)
T ss_pred             EcCCceEEEEEcC------CcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCcCCCCEEEEeecCCCcC
Confidence            76444 5555443      3579999999999999999977678889999999999999999999999999999998888


Q ss_pred             cHHHHHHHHHHHHHHhhCC
Q psy14927       1055 LAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1055 ~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      ++..|..+|+.||.||+|.
T Consensus       310 ~~~~A~~~g~~aa~~i~g~  328 (450)
T PRK06116        310 LTPVAIAAGRRLSERLFNN  328 (450)
T ss_pred             cHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999873

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=99.97  E-value=2.7e-30  Score=308.57  Aligned_cols=273  Identities=34%  Similarity=0.499  Sum_probs=218.7

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhcccccccc------------------------------------chhhh
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL------------------------------------NLETM  833 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~------------------------------------~~~~~  833 (1074)
                      .+|+||||||||+.||+.+++     .++|+. ..||..                                    +|..+
T Consensus         5 ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~   83 (472)
T PRK05976          5 YDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFAKV   83 (472)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHHHH
Confidence            459999999999999999999     677764 344422                                    22222


Q ss_pred             hhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCC-------eEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCC
Q psy14927        834 MGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPN-------TVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVD  906 (1074)
Q Consensus       834 ~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~-------~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~  906 (1074)
                      ..++....+.+...+...+++.||+++.|+++++|++       .+.|.+.+|+..++.||+||||||++|..+|+++..
T Consensus        84 ~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~  163 (472)
T PRK05976         84 QERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVELPGLPFD  163 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCCCCCCCCC
Confidence            2333333344444456677788999999999999998       888888777546799999999999999767777655


Q ss_pred             CcceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCc
Q psy14927        907 EETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGT  969 (1074)
Q Consensus       907 ~~~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~  969 (1074)
                      ..+++++++++.+..                 |..|+++|.+||++++.++++ +.+++++...+.+.|++.||++++++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il-~~~~~~~~~~l~~~l~~~gI~i~~~~  242 (472)
T PRK05976        164 GEYVISSDEALSLETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL-PTEDAELSKEVARLLKKLGVRVVTGA  242 (472)
T ss_pred             CceEEcchHhhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC-CcCCHHHHHHHHHHHHhcCCEEEeCc
Confidence            666788888776543                 888899999999999999998 78899999999999999999999999


Q ss_pred             eEEEEEec-CCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecc
Q psy14927        970 KVTGASKS-GDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGD 1048 (1074)
Q Consensus       970 ~v~~i~~~-~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD 1048 (1074)
                      .+.+++.. ++++.+....   +|+..++++|.||+++|++|+++.++++..++.. .+|+|.||++++|+.|+|||+||
T Consensus       243 ~v~~i~~~~~~~~~~~~~~---~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~g~i~Vd~~l~ts~~~IyAiGD  318 (472)
T PRK05976        243 KVLGLTLKKDGGVLIVAEH---NGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDV-EGGFIQIDDFCQTKERHIYAIGD  318 (472)
T ss_pred             EEEEEEEecCCCEEEEEEe---CCceEEEEeCEEEEeeCCccCCCCCCchhcCcee-cCCEEEECCCcccCCCCEEEeee
Confidence            99999851 2333332222   2545689999999999999999876566677765 46899999999999999999999


Q ss_pred             cCCCCCcHHHHHHHHHHHHHHhhCC
Q psy14927       1049 CIHGPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1049 ~~~~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      |++.++++..|..+|+.+|.||+|.
T Consensus       319 ~~~~~~~~~~A~~~g~~aa~~i~g~  343 (472)
T PRK05976        319 VIGEPQLAHVAMAEGEMAAEHIAGK  343 (472)
T ss_pred             cCCCcccHHHHHHHHHHHHHHHcCC
Confidence            9988889999999999999999874

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.97  E-value=3.5e-30  Score=307.15  Aligned_cols=275  Identities=31%  Similarity=0.453  Sum_probs=215.1

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhh---------------------------------
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGT---------------------------------  836 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~---------------------------------  836 (1074)
                      .+|+||||||||+.||+.+++     +++|+....|..++..-+|..                                 
T Consensus         5 ~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~   84 (466)
T PRK07818          5 YDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEVTFDYGAAF   84 (466)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCcccCHHHHH
Confidence            359999999999999999998     677765322222222111110                                 


Q ss_pred             --hhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcceechh
Q psy14927        837 --KSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSST  914 (1074)
Q Consensus       837 --~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t~~  914 (1074)
                        .....+.+.......+...+|+++.|+++++++..+.|...+|+..++.||+||||||++|..+|+++.. ..+++++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~pg~~~~-~~v~~~~  163 (466)
T PRK07818         85 DRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLLPGTSLS-ENVVTYE  163 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCCCCCCCC-CcEEchH
Confidence              0001111111223344456999999999999999888887777556799999999999999767776422 3466666


Q ss_pred             hHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEec
Q psy14927        915 GALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKS  977 (1074)
Q Consensus       915 ~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~  977 (1074)
                      +.+....                 |..++++|.+||++++.++++ +.+++++...+.+.|++.||++++++.|++++++
T Consensus       164 ~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l-~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~  242 (466)
T PRK07818        164 EQILSRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL-PNEDAEVSKEIAKQYKKLGVKILTGTKVESIDDN  242 (466)
T ss_pred             HHhccccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC-CccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEe
Confidence            5433221                 888899999999999999998 7889999999999999999999999999999876


Q ss_pred             CCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcHH
Q psy14927        978 GDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAH 1057 (1074)
Q Consensus       978 ~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~~ 1057 (1074)
                      ++.+.+.+.+.  +|+..++++|.||+++|++||+++++++..|++++++|+|.||++++|+.|||||+|||+..+++++
T Consensus       243 ~~~~~v~~~~~--~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~p~IyAiGD~~~~~~l~~  320 (466)
T PRK07818        243 GSKVTVTVSKK--DGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRTNVPHIYAIGDVTAKLQLAH  320 (466)
T ss_pred             CCeEEEEEEec--CCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCcccCCCCEEEEeecCCCcccHh
Confidence            65555665521  2444689999999999999999987778899999999999999999999999999999999888999


Q ss_pred             HHHHHHHHHHHHhhCC
Q psy14927       1058 KAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1058 ~A~~~G~~aA~~I~~~ 1073 (1074)
                      .|..+|+.||.||++.
T Consensus       321 ~A~~~g~~aa~~i~g~  336 (466)
T PRK07818        321 VAEAQGVVAAETIAGA  336 (466)
T ss_pred             HHHHHHHHHHHHHcCC
Confidence            9999999999999974

>PRK06370 mercuric reductase; Validated

Probab=99.97  E-value=3.7e-30  Score=306.96  Aligned_cols=268  Identities=28%  Similarity=0.447  Sum_probs=212.7

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccccccccch------------------------------------hhh
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNL------------------------------------ETM  833 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~------------------------------------~~~  833 (1074)
                      .+||||||||||++||+.+++     +++|+....|..+++                                    ..+
T Consensus         6 ~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~   85 (463)
T PRK06370          6 YDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDFKAV   85 (463)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCeEEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCHHHH
Confidence            459999999999999999998     678875433332222                                    222


Q ss_pred             hhhhhHHHhhhhhhHHHHhhhC-CeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCCCCcce
Q psy14927        834 MGTKSAAVKALTGGIAHLFKSN-KVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVDEETI  910 (1074)
Q Consensus       834 ~~~~~~~~~~l~~~~~~~l~~~-gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~~~v  910 (1074)
                      ..+.....+.+...+...+++. ||+++.|+++++++..+.+   +|  .++.||+||||||++|.  ++||+  +...+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~~~v~v---~~--~~~~~d~lViATGs~p~~p~i~G~--~~~~~  158 (463)
T PRK06370         86 MARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESPNTVRV---GG--ETLRAKRIFINTGARAAIPPIPGL--DEVGY  158 (463)
T ss_pred             HHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEccCCEEEE---Cc--EEEEeCEEEEcCCCCCCCCCCCCC--CcCce
Confidence            2222222233334456677777 9999999888888776655   34  57999999999999984  34443  23456


Q ss_pred             echhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEE
Q psy14927        911 VSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTG  973 (1074)
Q Consensus       911 ~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~  973 (1074)
                      +++++++....                 |..|.+.|.+||++++.+.++ +.+++++.+.+.+.|++.||++++++.+.+
T Consensus       159 ~~~~~~~~~~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~  237 (463)
T PRK06370        159 LTNETIFSLDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLL-PREDEDVAAAVREILEREGIDVRLNAECIR  237 (463)
T ss_pred             EcchHhhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCC-cccCHHHHHHHHHHHHhCCCEEEeCCEEEE
Confidence            77777765432                 888899999999999999998 778999999999999999999999999999


Q ss_pred             EEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCC
Q psy14927        974 ASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGP 1053 (1074)
Q Consensus       974 i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~ 1053 (1074)
                      +++++++..+.+..   ++.+.++++|.||+|+|++|+++.++++..|++++++|+|.||+++||++|||||+|||++.+
T Consensus       238 i~~~~~~~~v~~~~---~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t~~~~IyAiGD~~~~~  314 (463)
T PRK06370        238 VERDGDGIAVGLDC---NGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRTTNPGIYAAGDCNGRG  314 (463)
T ss_pred             EEEcCCEEEEEEEe---CCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcCCCCCEEEeeecCCCc
Confidence            98866665555543   233568999999999999999996667888999999999999999999999999999999988


Q ss_pred             CcHHHHHHHHHHHHHHhhCC
Q psy14927       1054 MLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1054 ~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      .+++.|..||++||.||++.
T Consensus       315 ~~~~~A~~~g~~aa~ni~~~  334 (463)
T PRK06370        315 AFTHTAYNDARIVAANLLDG  334 (463)
T ss_pred             ccHHHHHHHHHHHHHHHhCC
Confidence            89999999999999999864

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.97  E-value=5e-30  Score=304.10  Aligned_cols=269  Identities=26%  Similarity=0.385  Sum_probs=210.1

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhcc-ccccccc-hhhh------------------hhhhhHHHhhhhhhH-
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAG-DKGVKLN-LETM------------------MGTKSAAVKALTGGI-  848 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~-~~g~~~~-~~~~------------------~~~~~~~~~~l~~~~-  848 (1074)
                      .+||||||||||++||+.+++     +++|+.+ ..|+... ..-+                  ..+.....+.+.... 
T Consensus         4 yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (441)
T PRK08010          4 YQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNKNF   83 (441)
T ss_pred             CCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHH
Confidence            359999999999999999998     7888765 3455431 1111                  111111111121111 


Q ss_pred             HHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCCCCcceechhhHhcchH-----
Q psy14927        849 AHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVDEETIVSSTGALSLKK-----  921 (1074)
Q Consensus       849 ~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~~~v~t~~~~~~~~~-----  921 (1074)
                      ....+..||+++.|++++++++.+.|.+.+|. .++.||+||||||++|.  ++||+.. ...++++.+++....     
T Consensus        84 ~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~-~~~~~d~lviATGs~p~~p~i~G~~~-~~~v~~~~~~~~~~~~~~~v  161 (441)
T PRK08010         84 HNLADMPNIDVIDGQAEFINNHSLRVHRPEGN-LEIHGEKIFINTGAQTVVPPIPGITT-TPGVYDSTGLLNLKELPGHL  161 (441)
T ss_pred             HHHhhcCCcEEEEEEEEEecCCEEEEEeCCCe-EEEEeCEEEEcCCCcCCCCCCCCccC-CCCEEChhHhhcccccCCeE
Confidence            22233449999999999999998988877762 36999999999999983  3444421 234677777665433     


Q ss_pred             ------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeecc
Q psy14927        922 ------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVK  989 (1074)
Q Consensus       922 ------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~  989 (1074)
                                  |..|.++|.+||++++++.++ +.+++++...+.+.|++.||++++++.+.+++.+++.+.+...+  
T Consensus       162 ~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-~~~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~--  238 (441)
T PRK08010        162 GILGGGYIGVEFASMFANFGSKVTILEAASLFL-PREDRDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEH--  238 (441)
T ss_pred             EEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC-CCcCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcC--
Confidence                        788889999999999999988 77899999999999999999999999999998765555444221  


Q ss_pred             CCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHH
Q psy14927        990 DPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEG 1069 (1074)
Q Consensus       990 ~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~ 1069 (1074)
                           .++++|.|++++|++||++++.+..+|++++++|+|.||++++|++|||||+|||++.+++++.|..+|+.++.|
T Consensus       239 -----g~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~~~~~a~~~~~~~~~~  313 (441)
T PRK08010        239 -----AQLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDVTGGLQFTYISLDDYRIVRDE  313 (441)
T ss_pred             -----CeEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCccchhHHHHHHHHHHHH
Confidence                 258999999999999999987677889999999999999999999999999999999989999999999999999


Q ss_pred             hhCC
Q psy14927       1070 IAGD 1073 (1074)
Q Consensus      1070 I~~~ 1073 (1074)
                      |+|.
T Consensus       314 ~~g~  317 (441)
T PRK08010        314 LLGE  317 (441)
T ss_pred             HcCC
Confidence            9973

>TIGR02053 MerA mercuric reductase

Probab=99.97  E-value=7.7e-30  Score=304.39  Aligned_cols=268  Identities=30%  Similarity=0.470  Sum_probs=213.8

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhccccccc-c----------------------------------chhhhhh
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVK-L----------------------------------NLETMMG  835 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~-~----------------------------------~~~~~~~  835 (1074)
                      +||||||||+|+.||..+++     +++|+.. .||. +                                  +|..+..
T Consensus         2 DvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~   80 (463)
T TIGR02053         2 DLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELLE   80 (463)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHHH
Confidence            48999999999999999999     6778754 3332 2                                  2222333


Q ss_pred             hhhHHHhhhhh-hHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCCCCcceec
Q psy14927        836 TKSAAVKALTG-GIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVDEETIVS  912 (1074)
Q Consensus       836 ~~~~~~~~l~~-~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~~~v~t  912 (1074)
                      +.+.....+.. .+...+++.||+++.|+++++++..+.+  .+| ...+.||+||||||++|.  ++||++  ...+++
T Consensus        81 ~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v--~~g-~~~~~~~~lIiATGs~p~~p~i~G~~--~~~~~~  155 (463)
T TIGR02053        81 GKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVKV--DLG-REVRGAKRFLIATGARPAIPPIPGLK--EAGYLT  155 (463)
T ss_pred             HHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccCCEEEE--cCC-eEEEEeCEEEEcCCCCCCCCCCCCcc--cCceEC
Confidence            33333333432 2556778889999999998888765544  454 246899999999999984  344442  234677


Q ss_pred             hhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEE
Q psy14927        913 STGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGAS  975 (1074)
Q Consensus       913 ~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~  975 (1074)
                      +++++....                 |..|.++|.+||++++.++++ +.+++++...+.+.|++.||+++++++|+++.
T Consensus       156 ~~~~~~~~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~  234 (463)
T TIGR02053       156 SEEALALDRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL-PREEPEISAAVEEALAEEGIEVVTSAQVKAVS  234 (463)
T ss_pred             chhhhCcccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC-CccCHHHHHHHHHHHHHcCCEEEcCcEEEEEE
Confidence            777765432                 888899999999999999998 78999999999999999999999999999998


Q ss_pred             ecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCc
Q psy14927        976 KSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPML 1055 (1074)
Q Consensus       976 ~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~ 1055 (1074)
                      .+++...+++.+   ++.+.++++|.||+|+|++|+++.+++...+++++++|+|.||+++||+.|||||+|||++.+.+
T Consensus       235 ~~~~~~~v~~~~---~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~VyAiGD~~~~~~~  311 (463)
T TIGR02053       235 VRGGGKIITVEK---PGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIYAAGDVTGGLQL  311 (463)
T ss_pred             EcCCEEEEEEEe---CCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccCCCCCEEEeeecCCCccc
Confidence            765555565543   23357899999999999999999666788899999999999999999999999999999999889


Q ss_pred             HHHHHHHHHHHHHHhhCC
Q psy14927       1056 AHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1056 ~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      ++.|..||++||.||++.
T Consensus       312 ~~~A~~~g~~aa~ni~~~  329 (463)
T TIGR02053       312 EYVAAKEGVVAAENALGG  329 (463)
T ss_pred             HhHHHHHHHHHHHHhcCC
Confidence            999999999999999874

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=99.97  E-value=6.7e-30  Score=304.03  Aligned_cols=272  Identities=21%  Similarity=0.336  Sum_probs=217.9

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhc-----c---ccccc-----------------------------------
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQA-----G---DKGVK-----------------------------------  827 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~-----~---~~g~~-----------------------------------  827 (1074)
                      +||||||||+|+.+|+.+++     .++++.     .   ..||.                                   
T Consensus         4 DvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~   83 (484)
T TIGR01438         4 DLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVEET   83 (484)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccCCC
Confidence            49999999999999999998     567742     1   12331                                   


Q ss_pred             --cchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCC
Q psy14927        828 --LNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEV  905 (1074)
Q Consensus       828 --~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~  905 (1074)
                        ++|..+..++......+...+...++..||+++.|++.+++++.+.|...+|...+++||+||||||++|. +|.+++
T Consensus        84 ~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~-~p~ipG  162 (484)
T TIGR01438        84 VKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPR-YPGIPG  162 (484)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCCCCC-CCCCCC
Confidence              12333344444455555556677788899999999999999998888765664467999999999999984 334554


Q ss_pred             CCcceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeC
Q psy14927        906 DEETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLG  968 (1074)
Q Consensus       906 ~~~~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~  968 (1074)
                      .....+++++++.+..                 |..|+++|.+||++.+ +.++ +.+++++.+.+.+.|++.||+++++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~~~l-~~~d~~~~~~l~~~L~~~gV~i~~~  240 (484)
T TIGR01438       163 AKELCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILL-RGFDQDCANKVGEHMEEHGVKFKRQ  240 (484)
T ss_pred             ccceeecHHHhhcccccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe-cccc-cccCHHHHHHHHHHHHHcCCEEEeC
Confidence            4345567777765443                 8888999999999987 5677 7899999999999999999999999


Q ss_pred             ceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCC-CCCeeeCCCCCCCCCCEEEec
Q psy14927        969 TKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDE-KGRVPVNSRFQTVIPNIFAIG 1047 (1074)
Q Consensus       969 ~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~-~G~I~Vd~~~~ts~~~IyAiG 1047 (1074)
                      +.+.++...++.+.+++.+   ++++.++++|.||+++|++||+++++++..|+++++ +|+|.||++++|++|||||+|
T Consensus       241 ~~v~~v~~~~~~~~v~~~~---~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~Ts~p~IyA~G  317 (484)
T TIGR01438       241 FVPIKVEQIEAKVKVTFTD---STNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQTNVPYIYAVG  317 (484)
T ss_pred             ceEEEEEEcCCeEEEEEec---CCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCCcccCCCCEEEEE
Confidence            9999998765555666654   122357999999999999999998878899999876 599999999999999999999


Q ss_pred             ccCC-CCCcHHHHHHHHHHHHHHhhCC
Q psy14927       1048 DCIH-GPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1048 D~~~-~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      ||+. .+.+++.|..+|+.+|.||++.
T Consensus       318 Dv~~~~~~l~~~A~~~g~~aa~~i~~~  344 (484)
T TIGR01438       318 DILEDKQELTPVAIQAGRLLAQRLFSG  344 (484)
T ss_pred             EecCCCccchHHHHHHHHHHHHHHhcC
Confidence            9996 5778999999999999999863

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=99.97  E-value=8.6e-30  Score=304.11  Aligned_cols=274  Identities=38%  Similarity=0.627  Sum_probs=215.5

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhh------cccccccc-c---------------------------------
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQ------AGDKGVKL-N---------------------------------  829 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~------~~~~g~~~-~---------------------------------  829 (1074)
                      .+|+||||||||+.||+++++     .++|+      ....|+.. +                                 
T Consensus         5 ~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~~~   84 (475)
T PRK06327          5 FDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVDGV   84 (475)
T ss_pred             eeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCCCC
Confidence            359999999999999999999     67776      13333321 1                                 


Q ss_pred             ---hhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEec----CCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCC
Q psy14927        830 ---LETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITG----PNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPG  902 (1074)
Q Consensus       830 ---~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id----~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipg  902 (1074)
                         |..+..+.+...+.+...+...++..||+++.|++++++    +..+.+...++  .+++||+||||||++|..+|+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~--~~~~~d~lViATGs~p~~~p~  162 (475)
T PRK06327         85 KIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDE--TVITAKHVIIATGSEPRHLPG  162 (475)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCC--eEEEeCEEEEeCCCCCCCCCC
Confidence               111111112222233334556677789999999998887    34444432333  579999999999999976777


Q ss_pred             CCCCCcceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEE
Q psy14927        903 IEVDEETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQF  965 (1074)
Q Consensus       903 i~~~~~~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i  965 (1074)
                      ++.....++++++++.+..                 |..+.++|.+||++++.+.++ +.+++++...+.+.|++.||++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-~~~d~~~~~~~~~~l~~~gi~i  241 (475)
T PRK06327        163 VPFDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFL-AAADEQVAKEAAKAFTKQGLDI  241 (475)
T ss_pred             CCCCCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccC-CcCCHHHHHHHHHHHHHcCcEE
Confidence            7655566777777665432                 788889999999999999998 6789999999999999999999


Q ss_pred             EeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEE
Q psy14927        966 KLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFA 1045 (1074)
Q Consensus       966 ~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyA 1045 (1074)
                      ++++.|.+++.+++++.+.+.+.  +|+..++++|.||+++|++|+++++.++.+|++++++|+|.||++++|+.|||||
T Consensus       242 ~~~~~v~~i~~~~~~v~v~~~~~--~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~Ts~~~VyA  319 (475)
T PRK06327        242 HLGVKIGEIKTGGKGVSVAYTDA--DGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRTNVPNVYA  319 (475)
T ss_pred             EeCcEEEEEEEcCCEEEEEEEeC--CCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCCccCCCCEEE
Confidence            99999999988766666666542  2444689999999999999999976677889999999999999999999999999


Q ss_pred             ecccCCCCCcHHHHHHHHHHHHHHhhCC
Q psy14927       1046 IGDCIHGPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1046 iGD~~~~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      +|||+..|++++.|..+|..||.||++.
T Consensus       320 ~GD~~~~~~~~~~A~~~G~~aa~~i~g~  347 (475)
T PRK06327        320 IGDVVRGPMLAHKAEEEGVAVAERIAGQ  347 (475)
T ss_pred             EEeccCCcchHHHHHHHHHHHHHHHcCC
Confidence            9999998889999999999999999874

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=99.97  E-value=8.6e-30  Score=302.25  Aligned_cols=270  Identities=27%  Similarity=0.391  Sum_probs=213.8

Q ss_pred             hhhhhhccccchHHHHHHHhh------hhhhhc--------cccccc---------------------------------
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT------KLFTQA--------GDKGVK---------------------------------  827 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~------~l~e~~--------~~~g~~---------------------------------  827 (1074)
                      .+|+||||||+|..||+.+++      .++|+.        ...||.                                 
T Consensus         4 ~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~~~   83 (486)
T TIGR01423         4 FDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWEFD   83 (486)
T ss_pred             cCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCeecc
Confidence            459999999999999999987      466752        234431                                 


Q ss_pred             -----cchhhhhhhhhHHHhhhhhhHHHHhhh-CCeEEEeeeEEEecCCeEEEEeCC-C---CeeEEEcCeEEEccCCCC
Q psy14927        828 -----LNLETMMGTKSAAVKALTGGIAHLFKS-NKVTQLNGHGKITGPNTVTVIKSD-G---STEEVKTKNILIATGSEV  897 (1074)
Q Consensus       828 -----~~~~~~~~~~~~~~~~l~~~~~~~l~~-~gV~~~~g~v~~id~~~~~v~~~~-G---~~~~i~~d~lIIATG~~p  897 (1074)
                           ++|..+..+++.....+...+...++. .||+++.|++++++++.+.|.... +   ...++.||+||||||++|
T Consensus        84 ~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~lIIATGs~p  163 (486)
T TIGR01423        84 RSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHILLATGSWP  163 (486)
T ss_pred             CCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCEEEEecCCCC
Confidence                 133334444455555565666677776 499999999999999888886421 1   125799999999999998


Q ss_pred             CCCCCCCCCCcceechhhHhcchH-----------------hhHHhhc---CCcEEEEecCCccCCCCCCHHHHHHHHHH
Q psy14927        898 TPFPGIEVDEETIVSSTGALSLKK-----------------GSVWGRL---GAEVTAIEFMNAIGGMGIDGEVAKQFQRI  957 (1074)
Q Consensus       898 ~~ipgi~~~~~~v~t~~~~~~~~~-----------------A~~l~~~---G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~  957 (1074)
                      . .|.+++. ..++++++++.+..                 |..+..+   |.+|||+++.++++ +.+++++.+.+.+.
T Consensus       164 ~-~p~i~G~-~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il-~~~d~~~~~~l~~~  240 (486)
T TIGR01423       164 Q-MLGIPGI-EHCISSNEAFYLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL-RGFDSTLRKELTKQ  240 (486)
T ss_pred             C-CCCCCCh-hheechhhhhccccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc-cccCHHHHHHHHHH
Confidence            4 3334432 23567777665543                 5555454   99999999999998 78999999999999


Q ss_pred             HHhCCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCC
Q psy14927        958 LGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRF 1036 (1074)
Q Consensus       958 l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~ 1036 (1074)
                      |++.||++++++.++++..++++ ..+.+.+      +.++++|.||+++|++|+++++.++..|++++++|+|.||+++
T Consensus       241 L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~------g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~l  314 (486)
T TIGR01423       241 LRANGINIMTNENPAKVTLNADGSKHVTFES------GKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFS  314 (486)
T ss_pred             HHHcCCEEEcCCEEEEEEEcCCceEEEEEcC------CCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecCCCC
Confidence            99999999999999999865443 4555543      3479999999999999999987778899999999999999999


Q ss_pred             CCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHhhCC
Q psy14927       1037 QTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1037 ~ts~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      ||++|||||+|||++.+++++.|..||+++|.||++.
T Consensus       315 ~Ts~~~IyA~GDv~~~~~l~~~A~~qG~~aa~ni~g~  351 (486)
T TIGR01423       315 RTNVPNIYAIGDVTDRVMLTPVAINEGAAFVDTVFGN  351 (486)
T ss_pred             cCCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999974

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PLN02546 glutathione reductase

Probab=99.97  E-value=7.3e-30  Score=305.79  Aligned_cols=266  Identities=28%  Similarity=0.419  Sum_probs=216.7

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhc---------ccccc---------------------------------
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQA---------GDKGV---------------------------------  826 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~---------~~~g~---------------------------------  826 (1074)
                      ..+|+||||||+|+.||+.+++     .++|+.         ...||                                 
T Consensus        79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~~  158 (558)
T PLN02546         79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWKY  158 (558)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCccc
Confidence            3469999999999999999998     677741         12222                                 


Q ss_pred             ----ccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCC
Q psy14927        827 ----KLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPG  902 (1074)
Q Consensus       827 ----~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipg  902 (1074)
                          .++|..+..++......+..++...+++.||+++.|++++++++.+.+   +|  .++.||+||||||++|. +|.
T Consensus       159 ~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v---~G--~~~~~D~LVIATGs~p~-~P~  232 (558)
T PLN02546        159 ETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDV---DG--KLYTARNILIAVGGRPF-IPD  232 (558)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCEEEE---CC--EEEECCEEEEeCCCCCC-CCC
Confidence                235555555666666777777888899999999999999999986655   45  57999999999999984 333


Q ss_pred             CCCCCcceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEE
Q psy14927        903 IEVDEETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQF  965 (1074)
Q Consensus       903 i~~~~~~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i  965 (1074)
                      +++. ..++++++++....                 |..|..+|.+||++++.+.++ +.++++++..+.+.|++.||++
T Consensus       233 IpG~-~~v~~~~~~l~~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il-~~~d~~~~~~l~~~L~~~GV~i  310 (558)
T PLN02546        233 IPGI-EHAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL-RGFDEEVRDFVAEQMSLRGIEF  310 (558)
T ss_pred             CCCh-hhccCHHHHHhccccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc-cccCHHHHHHHHHHHHHCCcEE
Confidence            4432 24677777765432                 788889999999999999988 7899999999999999999999


Q ss_pred             EeCceEEEEEecCCe-EEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEE
Q psy14927        966 KLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIF 1044 (1074)
Q Consensus       966 ~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~Iy 1044 (1074)
                      ++++.+.++...+++ +.+.  .    +.+..+.+|.||+++|++||++++.++.+|++++++|+|.||+++||++||||
T Consensus       311 ~~~~~v~~i~~~~~g~v~v~--~----~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~Ts~p~IY  384 (558)
T PLN02546        311 HTEESPQAIIKSADGSLSLK--T----NKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRTSVPSIW  384 (558)
T ss_pred             EeCCEEEEEEEcCCCEEEEE--E----CCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCceeCCCCEE
Confidence            999999999864333 3333  2    12344569999999999999998767889999999999999999999999999


Q ss_pred             EecccCCCCCcHHHHHHHHHHHHHHhhCC
Q psy14927       1045 AIGDCIHGPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1045 AiGD~~~~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      |+|||++.+++++.|..+|+.+|.||++.
T Consensus       385 AaGDv~~~~~l~~~A~~~g~~~a~~i~g~  413 (558)
T PLN02546        385 AVGDVTDRINLTPVALMEGGALAKTLFGN  413 (558)
T ss_pred             EeeccCCCcccHHHHHHHHHHHHHHHcCC
Confidence            99999999889999999999999999974

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=99.97  E-value=1.2e-29  Score=301.76  Aligned_cols=270  Identities=31%  Similarity=0.442  Sum_probs=215.9

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhccccccc-------------------------------------cchhhh
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVK-------------------------------------LNLETM  833 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~-------------------------------------~~~~~~  833 (1074)
                      +|+||||||||+.||..+++     +++|+....|..                                     ++|..+
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~   81 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQM   81 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHHH
Confidence            38999999999999999998     677764322211                                     123333


Q ss_pred             hhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcceech
Q psy14927        834 MGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSS  913 (1074)
Q Consensus       834 ~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t~  913 (1074)
                      ..+.+...+.+.......++..+|+++.|++.+++++.+.|..++| ..+++||+||||||++|..+|..+.....++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~-~~~~~~d~lviATGs~p~~~p~~~~~~~~v~~~  160 (458)
T PRK06912         82 QARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGDK-EEVVDAEQFIIAAGSEPTELPFAPFDGKWIINS  160 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEeeCCC-cEEEECCEEEEeCCCCCCCCCCCCCCCCeEEcc
Confidence            3333344444444556667778999999999999999988877555 247999999999999986555333344567788


Q ss_pred             hhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEe
Q psy14927        914 TGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASK  976 (1074)
Q Consensus       914 ~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~  976 (1074)
                      .+++.+..                 |..+.+.|.+||++++.++++ +.+++++.+.+.+.|++.||++++++.+.+++.
T Consensus       161 ~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll-~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~  239 (458)
T PRK06912        161 KHAMSLPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL-PGEDEDIAHILREKLENDGVKIFTGAALKGLNS  239 (458)
T ss_pred             hHHhCccccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-ccccHHHHHHHHHHHHHCCCEEEECCEEEEEEE
Confidence            77776543                 778888999999999999998 788999999999999999999999999999987


Q ss_pred             cCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcH
Q psy14927        977 SGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLA 1056 (1074)
Q Consensus       977 ~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~ 1056 (1074)
                      +++.+.  +.+   +|+..++++|.||+++|++|+++.++++..|+.++++| |.||+++||+.|||||+|||+++++++
T Consensus       240 ~~~~v~--~~~---~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~g-i~Vd~~~~ts~~~VyA~GD~~~~~~la  313 (458)
T PRK06912        240 YKKQAL--FEY---EGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVNEHMQTNVPHIYACGDVIGGIQLA  313 (458)
T ss_pred             cCCEEE--EEE---CCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCC-EEeCCCeecCCCCEEEEeecCCCcccH
Confidence            554333  333   24446799999999999999998766778889888777 999999999999999999999988899


Q ss_pred             HHHHHHHHHHHHHhhCC
Q psy14927       1057 HKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1057 ~~A~~~G~~aA~~I~~~ 1073 (1074)
                      +.|..+|++||.+|+|.
T Consensus       314 ~~A~~~g~~aa~~~~g~  330 (458)
T PRK06912        314 HVAFHEGTTAALHASGE  330 (458)
T ss_pred             HHHHHHHHHHHHHHcCC
Confidence            99999999999999874

>PTZ00058 glutathione reductase; Provisional

Probab=99.97  E-value=1.8e-29  Score=302.20  Aligned_cols=268  Identities=24%  Similarity=0.374  Sum_probs=215.9

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhcccccc-----------------------------------ccchhhh
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGV-----------------------------------KLNLETM  833 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~-----------------------------------~~~~~~~  833 (1074)
                      +.+|+||||||||+.||+.+++     .++|+. ..||                                   .++|..+
T Consensus        48 ~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~~~  126 (561)
T PTZ00058         48 VYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLPLL  126 (561)
T ss_pred             cccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHHHH
Confidence            4569999999999999999998     566764 2333                                   1344455


Q ss_pred             hhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEE--------------------------eCCCCeeEEEcC
Q psy14927        834 MGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVI--------------------------KSDGSTEEVKTK  887 (1074)
Q Consensus       834 ~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~--------------------------~~~G~~~~i~~d  887 (1074)
                      ..+.......+...+...+++.||+++.|++.+++++++.|+                          .++|  .+++||
T Consensus       127 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g--~~i~ad  204 (561)
T PTZ00058        127 VERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDG--QVIEGK  204 (561)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCC--cEEECC
Confidence            555566666666667788888999999999999988877541                          2355  579999


Q ss_pred             eEEEccCCCCCCCCCCCCCCcceechhhHhcchH----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHH
Q psy14927        888 NILIATGSEVTPFPGIEVDEETIVSSTGALSLKK----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVA  951 (1074)
Q Consensus       888 ~lIIATG~~p~~ipgi~~~~~~v~t~~~~~~~~~----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~  951 (1074)
                      +||||||++|. +|.+++. ..++++++++.+..                |..+.++|++||+++++++++ +.+++++.
T Consensus       205 ~lVIATGS~P~-~P~IpG~-~~v~ts~~~~~l~~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il-~~~d~~i~  281 (561)
T PTZ00058        205 NILIAVGNKPI-FPDVKGK-EFTISSDDFFKIKEAKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL-RKFDETII  281 (561)
T ss_pred             EEEEecCCCCC-CCCCCCc-eeEEEHHHHhhccCCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc-ccCCHHHH
Confidence            99999999984 3445443 25778888776532                888899999999999999998 78999999


Q ss_pred             HHHHHHHHhCCCEEEeCceEEEEEecCC-eEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCe
Q psy14927        952 KQFQRILGKQGMQFKLGTKVTGASKSGD-NITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRV 1030 (1074)
Q Consensus       952 ~~~~~~l~~~gV~i~~~~~v~~i~~~~~-~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I 1030 (1074)
                      +.+.+.|++.||+++++..+.+++++++ ++.+.+.+     .++++++|.|++++|++|+++++++...++. +++|+|
T Consensus       282 ~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~-----~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~-~~~G~I  355 (561)
T PTZ00058        282 NELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSD-----GRKYEHFDYVIYCVGRSPNTEDLNLKALNIK-TPKGYI  355 (561)
T ss_pred             HHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECC-----CCEEEECCEEEECcCCCCCccccCcccccee-cCCCeE
Confidence            9999999999999999999999987543 34444322     2367999999999999999998776666665 467999


Q ss_pred             eeCCCCCCCCCCEEEecccCC----------------------------------CCCcHHHHHHHHHHHHHHhhCC
Q psy14927       1031 PVNSRFQTVIPNIFAIGDCIH----------------------------------GPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1031 ~Vd~~~~ts~~~IyAiGD~~~----------------------------------~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      .||+++||++|||||+|||++                                  .+++++.|..+|+++|.||+|.
T Consensus       356 ~VDe~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~  432 (561)
T PTZ00058        356 KVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGP  432 (561)
T ss_pred             EECcCCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhCC
Confidence            999999999999999999998                                  5778999999999999999874

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=99.97  E-value=4.4e-29  Score=298.19  Aligned_cols=271  Identities=41%  Similarity=0.613  Sum_probs=215.7

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhccccccccchh------------------------------------hhh
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLE------------------------------------TMM  834 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~------------------------------------~~~  834 (1074)
                      +|+||||||||+.||+.+++     +++|+ +..||.....                                    .+.
T Consensus         3 DvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   81 (461)
T TIGR01350         3 DVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDWEKMQ   81 (461)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCHHHHH
Confidence            49999999999999999999     78887 6666642110                                    000


Q ss_pred             hhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCC-CCCCCcceech
Q psy14927        835 GTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPG-IEVDEETIVSS  913 (1074)
Q Consensus       835 ~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipg-i~~~~~~v~t~  913 (1074)
                      .+.......+...+...++..||+++.|+++++++..+.+...+|. .++.||+||||||++|..+|. ++.....++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~-~~~~~d~lVlAtG~~p~~~~~~~~~~~~~~~~~  160 (461)
T TIGR01350        82 KRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVLVTGENGE-ETLTAKNIIIATGSRPRSLPGPFDFDGEVVITS  160 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCc-EEEEeCEEEEcCCCCCCCCCCCCCCCCceEEcc
Confidence            1111111222223445666789999999999999988888766652 479999999999999854443 33344467788


Q ss_pred             hhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEe
Q psy14927        914 TGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASK  976 (1074)
Q Consensus       914 ~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~  976 (1074)
                      ++.+....                 |..+.+.|.+||++++.+.++ +.+++++...+.+.|++.||++++++.+.+++.
T Consensus       161 ~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~  239 (461)
T TIGR01350       161 TGALNLKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL-PGEDAEVSKVVAKALKKKGVKILTNTKVTAVEK  239 (461)
T ss_pred             hHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC-CCCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEE
Confidence            87775433                 778889999999999999998 789999999999999999999999999999987


Q ss_pred             cCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcH
Q psy14927        977 SGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLA 1056 (1074)
Q Consensus       977 ~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~ 1056 (1074)
                      +++++.+.+.+    |+..++++|.||+|+|++|++..+.++..++.++.+|+|.||++++|+.|+|||+|||+..++++
T Consensus       240 ~~~~v~v~~~~----g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~IyaiGD~~~~~~~~  315 (461)
T TIGR01350       240 NDDQVVYENKG----GETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRTNVPGIYAIGDVIGGPMLA  315 (461)
T ss_pred             eCCEEEEEEeC----CcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCcccCCCCEEEeeecCCCcccH
Confidence            66666555433    33467999999999999999985447888999999999999999999999999999999988899


Q ss_pred             HHHHHHHHHHHHHhhCC
Q psy14927       1057 HKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1057 ~~A~~~G~~aA~~I~~~ 1073 (1074)
                      ..|..+|+.+|.||++.
T Consensus       316 ~~A~~~g~~aa~~i~~~  332 (461)
T TIGR01350       316 HVASHEGIVAAENIAGK  332 (461)
T ss_pred             HHHHHHHHHHHHHHcCC
Confidence            99999999999999874

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.97  E-value=9.6e-29  Score=292.83  Aligned_cols=269  Identities=27%  Similarity=0.416  Sum_probs=214.3

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccc-cccc-c------------------chhhhhhhhhHHHhhhhhhHH
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGD-KGVK-L------------------NLETMMGTKSAAVKALTGGIA  849 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~-~g~~-~------------------~~~~~~~~~~~~~~~l~~~~~  849 (1074)
                      .+||||||||||++||..+++     +++|+.+. .||. +                  +|..+..........+.....
T Consensus         4 ~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (438)
T PRK07251          4 YDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRGKNY   83 (438)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            359999999999999999998     78888753 4543 1                  223333333333344444455


Q ss_pred             HHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCCCCcceechhhHhcchH------
Q psy14927        850 HLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVDEETIVSSTGALSLKK------  921 (1074)
Q Consensus       850 ~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~~~v~t~~~~~~~~~------  921 (1074)
                      +.+.+.||+++.+++.++++..+.+...++ ..++.||+||||||++|.  ++||+. ....++++.+++.+..      
T Consensus        84 ~~~~~~gV~~~~g~~~~~~~~~v~v~~~~~-~~~~~~d~vViATGs~~~~p~i~G~~-~~~~v~~~~~~~~~~~~~~~vv  161 (438)
T PRK07251         84 AMLAGSGVDLYDAEAHFVSNKVIEVQAGDE-KIELTAETIVINTGAVSNVLPIPGLA-DSKHVYDSTGIQSLETLPERLG  161 (438)
T ss_pred             HHHHhCCCEEEEEEEEEccCCEEEEeeCCC-cEEEEcCEEEEeCCCCCCCCCCCCcC-CCCcEEchHHHhcchhcCCeEE
Confidence            677888999999999888877766653222 257999999999999984  445542 2345778877766543      


Q ss_pred             -----------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccC
Q psy14927        922 -----------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKD  990 (1074)
Q Consensus       922 -----------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~  990 (1074)
                                 |..+++.|.+||++++++.++ +..++++...+.+.|++.||+++++++++++..+++.+.+.  .   
T Consensus       162 IIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-~~~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~--~---  235 (438)
T PRK07251        162 IIGGGNIGLEFAGLYNKLGSKVTVLDAASTIL-PREEPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVV--T---  235 (438)
T ss_pred             EECCCHHHHHHHHHHHHcCCeEEEEecCCccC-CCCCHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEE--E---
Confidence                       788889999999999999998 77899999999999999999999999999998765544443  2   


Q ss_pred             CCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHh
Q psy14927        991 PTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGI 1070 (1074)
Q Consensus       991 ~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I 1070 (1074)
                      +  +.++++|.||+|+|++|+++.++++..++.++++|+|.||+++||++|||||+|||++.+.+.+.|..+|+.++.+|
T Consensus       236 ~--g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t~~~~IyaiGD~~~~~~~~~~a~~~~~~~~~~~  313 (438)
T PRK07251        236 E--DETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQTSVPGVFAVGDVNGGPQFTYISLDDFRIVFGYL  313 (438)
T ss_pred             C--CeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHH
Confidence            1  35799999999999999999876777888888899999999999999999999999999889999999999999999


Q ss_pred             hCC
Q psy14927       1071 AGD 1073 (1074)
Q Consensus      1071 ~~~ 1073 (1074)
                      ++.
T Consensus       314 ~~~  316 (438)
T PRK07251        314 TGD  316 (438)
T ss_pred             cCC
Confidence            864

>PRK07846 mycothione reductase; Reviewed

Probab=99.97  E-value=8.3e-29  Score=292.95  Aligned_cols=265  Identities=22%  Similarity=0.367  Sum_probs=205.3

Q ss_pred             hhhhhccccchHHHHHHHhh---hhhhhcccccc-----------------------------------ccchhhhhhhh
Q psy14927        796 VVLNTLGNCAAVQANYHLAT---KLFTQAGDKGV-----------------------------------KLNLETMMGTK  837 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~---~l~e~~~~~g~-----------------------------------~~~~~~~~~~~  837 (1074)
                      +|+||||||+|..||..++-   .++|+....|.                                   .++|..+..+.
T Consensus         3 D~vVIG~G~~g~~aa~~~~G~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~   82 (451)
T PRK07846          3 DLIIIGTGSGNSILDERFADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPDIVSRV   82 (451)
T ss_pred             CEEEECCCHHHHHHHHHHCCCeEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHHHHHHH
Confidence            48999999999999877533   45554322221                                   12333334344


Q ss_pred             hHHHhhhhhh-HHHH-hhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCC-CCcceechh
Q psy14927        838 SAAVKALTGG-IAHL-FKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEV-DEETIVSST  914 (1074)
Q Consensus       838 ~~~~~~l~~~-~~~~-l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~-~~~~v~t~~  914 (1074)
                      ....+.+... .... ++..||+++.|+++++++..+++  .+|  .+++||+||||||++|.. |.+++ ....+++++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~V~v--~~g--~~~~~d~lViATGs~p~~-p~i~g~~~~~~~~~~  157 (451)
T PRK07846         83 FGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGPKTLRT--GDG--EEITADQVVIAAGSRPVI-PPVIADSGVRYHTSD  157 (451)
T ss_pred             HHHHHHHhccchhhhhhhhCCcEEEEEEEEEecCCEEEE--CCC--CEEEeCEEEEcCCCCCCC-CCCCCcCCccEEchH
Confidence            3333444322 2333 67789999999999987765554  566  479999999999999843 33333 234567777


Q ss_pred             hHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEec
Q psy14927        915 GALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKS  977 (1074)
Q Consensus       915 ~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~  977 (1074)
                      +++.+..                 |..|.++|.+||+++++++++ +.+++++.+.+.+.+ +.||++++++++.+++++
T Consensus       158 ~~~~l~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll-~~~d~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~  235 (451)
T PRK07846        158 TIMRLPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL-RHLDDDISERFTELA-SKRWDVRLGRNVVGVSQD  235 (451)
T ss_pred             HHhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc-cccCHHHHHHHHHHH-hcCeEEEeCCEEEEEEEc
Confidence            7765543                 888899999999999999998 789999988877655 568999999999999876


Q ss_pred             CCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcHH
Q psy14927        978 GDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAH 1057 (1074)
Q Consensus       978 ~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~~ 1057 (1074)
                      ++++.+++.+      +.++++|.|++|+|++|++++++++..|++++++|+|.||+++||++|||||+|||++.+++++
T Consensus       236 ~~~v~v~~~~------g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~Ts~p~IyA~GD~~~~~~l~~  309 (451)
T PRK07846        236 GSGVTLRLDD------GSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRTSAEGVFALGDVSSPYQLKH  309 (451)
T ss_pred             CCEEEEEECC------CcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCcccCCCCEEEEeecCCCccChh
Confidence            5555565543      4579999999999999999987778899999999999999999999999999999999888999


Q ss_pred             HHHHHHHHHHHHhhCC
Q psy14927       1058 KAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1058 ~A~~~G~~aA~~I~~~ 1073 (1074)
                      .|..||+++|+||++.
T Consensus       310 ~A~~~g~~~a~ni~~~  325 (451)
T PRK07846        310 VANHEARVVQHNLLHP  325 (451)
T ss_pred             HHHHHHHHHHHHHcCC
Confidence            9999999999999864

>PRK14694 putative mercuric reductase; Provisional

Probab=99.97  E-value=1.4e-28  Score=293.44  Aligned_cols=267  Identities=25%  Similarity=0.434  Sum_probs=205.6

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhcccccccc-------------------------------------chh
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL-------------------------------------NLE  831 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~-------------------------------------~~~  831 (1074)
                      +.+|+||||||||++||..+++     .++|+. ..||..                                     +|.
T Consensus         6 ~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~   84 (468)
T PRK14694          6 NLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVVDRS   84 (468)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCccCHH
Confidence            4569999999999999999999     677764 333311                                     111


Q ss_pred             hhhhhhhHHHhhhhhh-HHHHhhh-CCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCCCC
Q psy14927        832 TMMGTKSAAVKALTGG-IAHLFKS-NKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVDE  907 (1074)
Q Consensus       832 ~~~~~~~~~~~~l~~~-~~~~l~~-~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~  907 (1074)
                      .+..+.+.....+... +...+.. .+|+++.|+++++|++.+.|++.+|+..+++||+||||||++|.  ++||+.  .
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~~p~i~G~~--~  162 (468)
T PRK14694         85 ALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPPVPGLA--E  162 (468)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCCCCCCCCCC--C
Confidence            2222222222222211 3333544 38999999999999999999988875557999999999999984  344442  2


Q ss_pred             cceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCce
Q psy14927        908 ETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTK  970 (1074)
Q Consensus       908 ~~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~  970 (1074)
                      ..++++.+.+.+..                 |..|.++|.+||++++ ++++ +.+++++...+.+.|++.||++++++.
T Consensus       163 ~~~~~~~~~~~l~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~-~~~l-~~~~~~~~~~l~~~l~~~GI~v~~~~~  240 (468)
T PRK14694        163 TPYLTSTSALELDHIPERLLVIGASVVALELAQAFARLGSRVTVLAR-SRVL-SQEDPAVGEAIEAAFRREGIEVLKQTQ  240 (468)
T ss_pred             CceEcchhhhchhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEC-CCCC-CCCCHHHHHHHHHHHHhCCCEEEeCCE
Confidence            23556555554432                 8888999999999986 4666 678999999999999999999999999


Q ss_pred             EEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccC
Q psy14927        971 VTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCI 1050 (1074)
Q Consensus       971 v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~ 1050 (1074)
                      +.+++.+++.+.+...     +  .++++|.||+++|++|+++++.+..+|++. ++|+|.||++++|++|||||+|||+
T Consensus       241 v~~i~~~~~~~~v~~~-----~--~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~-~~G~i~vd~~~~Ts~~~IyA~GD~~  312 (468)
T PRK14694        241 ASEVDYNGREFILETN-----A--GTLRAEQLLVATGRTPNTENLNLESIGVET-ERGAIRIDEHLQTTVSGIYAAGDCT  312 (468)
T ss_pred             EEEEEEcCCEEEEEEC-----C--CEEEeCEEEEccCCCCCcCCCCchhcCccc-CCCeEeeCCCcccCCCCEEEEeecC
Confidence            9999876554444322     1  259999999999999999987667788886 5799999999999999999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHhhCC
Q psy14927       1051 HGPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1051 ~~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      +.|.+++.|..+|+.||.||++.
T Consensus       313 ~~~~~~~~A~~~G~~aa~~i~~~  335 (468)
T PRK14694        313 DQPQFVYVAAAGGSRAAINMTGG  335 (468)
T ss_pred             CCcccHHHHHHHHHHHHHHhcCC
Confidence            99989999999999999999874

>PRK13748 putative mercuric reductase; Provisional

Probab=99.96  E-value=1e-28  Score=302.14  Aligned_cols=268  Identities=25%  Similarity=0.388  Sum_probs=206.3

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhcccccccc-c------------------------------------hh
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL-N------------------------------------LE  831 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~-~------------------------------------~~  831 (1074)
                      +.+||||||||+|+.||+.+++     .++|+. ..||.. +                                    +.
T Consensus        98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  176 (561)
T PRK13748         98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDRS  176 (561)
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCHH
Confidence            4569999999999999999999     677765 444421 1                                    11


Q ss_pred             hhhhhhhHHHhhhhh-hHHHHhhhC-CeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCCCC
Q psy14927        832 TMMGTKSAAVKALTG-GIAHLFKSN-KVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVDE  907 (1074)
Q Consensus       832 ~~~~~~~~~~~~l~~-~~~~~l~~~-gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~  907 (1074)
                      .+..+.......+.. .+...+... +|+++.|+++++++..+.|.+.+|+..+++||+||||||++|.  ++||+.  .
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~~--~  254 (561)
T PRK13748        177 RLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPGLK--E  254 (561)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCC--c
Confidence            111111111111111 133445555 8999999999999999988887774457999999999999984  344432  2


Q ss_pred             cceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCce
Q psy14927        908 ETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTK  970 (1074)
Q Consensus       908 ~~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~  970 (1074)
                      ..+++..+.+....                 |..|.++|.+||++++. .++ +.+++++...+.+.|++.||++++++.
T Consensus       255 ~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~-~~l-~~~d~~~~~~l~~~l~~~gI~i~~~~~  332 (561)
T PRK13748        255 TPYWTSTEALVSDTIPERLAVIGSSVVALELAQAFARLGSKVTILARS-TLF-FREDPAIGEAVTAAFRAEGIEVLEHTQ  332 (561)
T ss_pred             cceEccHHHhhcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC-ccc-cccCHHHHHHHHHHHHHCCCEEEcCCE
Confidence            23455555443221                 88889999999999985 455 568999999999999999999999999


Q ss_pred             EEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccC
Q psy14927        971 VTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCI 1050 (1074)
Q Consensus       971 v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~ 1050 (1074)
                      +++++.+++.+.+...+       .++++|.||+++|++||+.++.++..|++++++|+|.||+++||++|||||+|||+
T Consensus       333 v~~i~~~~~~~~v~~~~-------~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~~~IyA~GD~~  405 (561)
T PRK13748        333 ASQVAHVDGEFVLTTGH-------GELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRTSVPHIYAAGDCT  405 (561)
T ss_pred             EEEEEecCCEEEEEecC-------CeEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCcccCCCCEEEeeecC
Confidence            99998765554443322       25999999999999999998767889999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHhhCC
Q psy14927       1051 HGPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1051 ~~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      +.+.+++.|..+|++||.||++.
T Consensus       406 ~~~~~~~~A~~~g~~aa~~i~g~  428 (561)
T PRK13748        406 DQPQFVYVAAAAGTRAAINMTGG  428 (561)
T ss_pred             CCccchhHHHHHHHHHHHHHcCC
Confidence            99889999999999999999874

>PRK14727 putative mercuric reductase; Provisional

Probab=99.96  E-value=1.3e-28  Score=294.01  Aligned_cols=269  Identities=26%  Similarity=0.363  Sum_probs=206.9

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchh------------------------------------h
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLE------------------------------------T  832 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~------------------------------------~  832 (1074)
                      +.+|+||||||+|+.+|..+++     +++|+.+..||.....                                    .
T Consensus        16 ~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   95 (479)
T PRK14727         16 QLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSIDRGL   95 (479)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccCHHH
Confidence            3459999999999999999999     6777765555532111                                    0


Q ss_pred             hhhhhhHHHhhhhh-hHHHHhhhC-CeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCCCCc
Q psy14927        833 MMGTKSAAVKALTG-GIAHLFKSN-KVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVDEE  908 (1074)
Q Consensus       833 ~~~~~~~~~~~l~~-~~~~~l~~~-gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~~  908 (1074)
                      +..+.......+.. .+...+... ||+++.|++++++++.+.|.+.+|+..++.||+||||||++|.  ++||+.  ..
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~i~G~~--~~  173 (479)
T PRK14727         96 LLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTIPPIPGLM--DT  173 (479)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCCCCCCCCcC--cc
Confidence            11111111111211 133444444 8999999999999999999888875457999999999999984  334432  22


Q ss_pred             ceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceE
Q psy14927        909 TIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKV  971 (1074)
Q Consensus       909 ~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v  971 (1074)
                      .+++..+.+....                 |..+.++|.+||++++. .++ +.+++++...+.+.|++.||++++++++
T Consensus       174 ~~~~~~~~l~~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~l-~~~d~~~~~~l~~~L~~~GV~i~~~~~V  251 (479)
T PRK14727        174 PYWTSTEALFSDELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TLL-FREDPLLGETLTACFEKEGIEVLNNTQA  251 (479)
T ss_pred             ceecchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CCC-CcchHHHHHHHHHHHHhCCCEEEcCcEE
Confidence            3455544443221                 78888999999999875 566 6789999999999999999999999999


Q ss_pred             EEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCC
Q psy14927        972 TGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIH 1051 (1074)
Q Consensus       972 ~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~ 1051 (1074)
                      +++..+++.+.+...+       .++++|.||+++|++||+.++.++..|++++++|+|.||+++||++|||||+|||+.
T Consensus       252 ~~i~~~~~~~~v~~~~-------g~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~Ts~~~IyA~GD~~~  324 (479)
T PRK14727        252 SLVEHDDNGFVLTTGH-------GELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPDIYAAGDCSD  324 (479)
T ss_pred             EEEEEeCCEEEEEEcC-------CeEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeecCCCCEEEeeecCC
Confidence            9998765555444322       258999999999999999987678889999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHhhCC
Q psy14927       1052 GPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1052 ~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      .|.+++.|..+|+.||.||++.
T Consensus       325 ~~~~~~~A~~~G~~aa~~i~g~  346 (479)
T PRK14727        325 LPQFVYVAAAAGSRAGINMTGG  346 (479)
T ss_pred             cchhhhHHHHHHHHHHHHHcCC
Confidence            8889999999999999999874

>PTZ00052 thioredoxin reductase; Provisional

Probab=99.96  E-value=1.7e-28  Score=293.37  Aligned_cols=268  Identities=25%  Similarity=0.328  Sum_probs=206.3

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhcc--------ccccc-cc--------------------------------
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAG--------DKGVK-LN--------------------------------  829 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~--------~~g~~-~~--------------------------------  829 (1074)
                      +|+||||||||+.||+.+++     .++|+..        ..||. ++                                
T Consensus         7 DviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~~~~   86 (499)
T PTZ00052          7 DLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWKTSS   86 (499)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCCCCC
Confidence            49999999999999999998     6778521        24443 11                                


Q ss_pred             ---hhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCC
Q psy14927        830 ---LETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVD  906 (1074)
Q Consensus       830 ---~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~  906 (1074)
                         +..+..+.......+...+...++..||+++.|++.+.++..+.+... +....+.||+||||||++|..++.+++.
T Consensus        87 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~-~~~~~i~~d~lIIATGs~p~~p~~i~G~  165 (499)
T PTZ00052         87 SFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDN-SQEETITAKYILIATGGRPSIPEDVPGA  165 (499)
T ss_pred             CcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCEEEEeeC-CCceEEECCEEEEecCCCCCCCCCCCCc
Confidence               111122222222233333444455679999999999988887776532 2235799999999999998533335544


Q ss_pred             CcceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCc
Q psy14927        907 EETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGT  969 (1074)
Q Consensus       907 ~~~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~  969 (1074)
                      ....+++++++.+..                 |..|.++|.+||++++. .++ +.+++++.+.+.+.|++.||++++++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l-~~~d~~~~~~l~~~l~~~GV~i~~~~  243 (499)
T PTZ00052        166 KEYSITSDDIFSLSKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPL-RGFDRQCSEKVVEYMKEQGTLFLEGV  243 (499)
T ss_pred             cceeecHHHHhhhhcCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-ccc-ccCCHHHHHHHHHHHHHcCCEEEcCC
Confidence            445678888776543                 88889999999999874 566 78999999999999999999999999


Q ss_pred             eEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEeccc
Q psy14927        970 KVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDC 1049 (1074)
Q Consensus       970 ~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~ 1049 (1074)
                      .+.++...++.+.+.+.+      +.++++|.||+++|++||++++.++.+|++++++|++.+++. +|+.|+|||+|||
T Consensus       244 ~v~~v~~~~~~~~v~~~~------g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~Ts~p~IyAiGDv  316 (499)
T PTZ00052        244 VPINIEKMDDKIKVLFSD------GTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND-CTNIPNIFAVGDV  316 (499)
T ss_pred             eEEEEEEcCCeEEEEECC------CCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC-cCCCCCEEEEEEe
Confidence            999998755555565543      346899999999999999998777889999999999877766 9999999999999


Q ss_pred             CC-CCCcHHHHHHHHHHHHHHhhCC
Q psy14927       1050 IH-GPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1050 ~~-~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      +. .|.+++.|..+|+++|.||++.
T Consensus       317 ~~~~~~l~~~A~~~g~~aa~ni~g~  341 (499)
T PTZ00052        317 VEGRPELTPVAIKAGILLARRLFKQ  341 (499)
T ss_pred             cCCCcccHHHHHHHHHHHHHHHhCC
Confidence            85 5779999999999999999874

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=99.96  E-value=2.4e-28  Score=291.67  Aligned_cols=264  Identities=39%  Similarity=0.551  Sum_probs=206.8

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhccccccccc------------------------------------hhhhh
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLN------------------------------------LETMM  834 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~------------------------------------~~~~~  834 (1074)
                      +||||||||+|+.||..+++     .++|+ +..|+...                                    +..+.
T Consensus         5 DvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~   83 (460)
T PRK06292          5 DVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKIDFKKVM   83 (460)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccCHHHHH
Confidence            59999999999999999998     67787 45555321                                    11111


Q ss_pred             hhhhHHHhhhhhhH-HHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCC-CCCCCCCCC-CCccee
Q psy14927        835 GTKSAAVKALTGGI-AHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSE-VTPFPGIEV-DEETIV  911 (1074)
Q Consensus       835 ~~~~~~~~~l~~~~-~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~-p~~ipgi~~-~~~~v~  911 (1074)
                      .........+...+ ...+...||+++.|++..+++..+.+   ++  .++.||+||||||++ | ++||... ....++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v---~~--~~~~~d~lIiATGs~~p-~ipg~~~~~~~~~~  157 (460)
T PRK06292         84 ARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEV---NG--ERIEAKNIVIATGSRVP-PIPGVWLILGDRLL  157 (460)
T ss_pred             HHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEE---Cc--EEEEeCEEEEeCCCCCC-CCCCCcccCCCcEE
Confidence            11111111111222 33456679999999988888877665   45  679999999999999 5 4666532 234567


Q ss_pred             chhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEE
Q psy14927        912 SSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGA  974 (1074)
Q Consensus       912 t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i  974 (1074)
                      ++++.+.+..                 |..|.++|.+||++++.++++ +.+++++...+.+.|++. |++++++.+.++
T Consensus       158 ~~~~~~~~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-~~~d~~~~~~~~~~l~~~-I~i~~~~~v~~i  235 (460)
T PRK06292        158 TSDDAFELDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRIL-PLEDPEVSKQAQKILSKE-FKIKLGAKVTSV  235 (460)
T ss_pred             CchHHhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC-cchhHHHHHHHHHHHhhc-cEEEcCCEEEEE
Confidence            7777664332                 788889999999999999998 789999999999999999 999999999999


Q ss_pred             EecCC-eEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCC
Q psy14927        975 SKSGD-NITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGP 1053 (1074)
Q Consensus       975 ~~~~~-~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~ 1053 (1074)
                      +.+++ .+.++..+    +++.++++|.||+++|++|+++.+.++..|++++++|+|.||++++|++|||||+|||++.+
T Consensus       236 ~~~~~~~v~~~~~~----~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~ts~~~IyA~GD~~~~~  311 (460)
T PRK06292        236 EKSGDEKVEELEKG----GKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGIYAAGDVNGKP  311 (460)
T ss_pred             EEcCCceEEEEEcC----CceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCcccCCCCEEEEEecCCCc
Confidence            87544 34443222    44578999999999999999998767889999999999999999999999999999999988


Q ss_pred             CcHHHHHHHHHHHHHHhhC
Q psy14927       1054 MLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus      1054 ~~~~~A~~~G~~aA~~I~~ 1072 (1074)
                      ++++.|..||+.||.||++
T Consensus       312 ~~~~~A~~qg~~aa~~i~~  330 (460)
T PRK06292        312 PLLHEAADEGRIAAENAAG  330 (460)
T ss_pred             cchhHHHHHHHHHHHHhcC
Confidence            8999999999999999987

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=99.96  E-value=3.6e-29  Score=281.70  Aligned_cols=263  Identities=24%  Similarity=0.306  Sum_probs=211.8

Q ss_pred             chhhhhhccccchHHHHHHHhh-------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCC-eEEEeeeEE
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNK-VTQLNGHGK  865 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~g-V~~~~g~v~  865 (1074)
                      +++|||||||++|+.+|..|.+       +++++...+...+.+..+..+.-.. ..+...+...++..+ |+|+.++|+
T Consensus         3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~-~~i~~p~~~~~~~~~~v~~~~~~V~   81 (405)
T COG1252           3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSE-SEIAIPLRALLRKSGNVQFVQGEVT   81 (405)
T ss_pred             CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCCh-hheeccHHHHhcccCceEEEEEEEE
Confidence            4569999999999999999998       4667777777777777777665433 677788899998665 999999999


Q ss_pred             EecCCeEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCCCCcceechhhHhcchH----------------------
Q psy14927        866 ITGPNTVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVDEETIVSSTGALSLKK----------------------  921 (1074)
Q Consensus       866 ~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~~~v~t~~~~~~~~~----------------------  921 (1074)
                      .||.+..+|++.++  .++.||+||||+|+.+.  .+||+.......-+.++...++.                      
T Consensus        82 ~ID~~~k~V~~~~~--~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~  159 (405)
T COG1252          82 DIDRDAKKVTLADL--GEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIV  159 (405)
T ss_pred             EEcccCCEEEeCCC--ccccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEE
Confidence            99999999999985  58999999999999973  34554333333335555543222                      


Q ss_pred             -----------hhHHhhc-------------CCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEec
Q psy14927        922 -----------GSVWGRL-------------GAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKS  977 (1074)
Q Consensus       922 -----------A~~l~~~-------------G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~  977 (1074)
                                 |..|.++             ..+|+||+++++++ |.++++++.+..+.|++.||++++++.|++++++
T Consensus       160 IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL-p~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~  238 (405)
T COG1252         160 IVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL-PMFPPKLSKYAERALEKLGVEVLLGTPVTEVTPD  238 (405)
T ss_pred             EECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc-cCCCHHHHHHHHHHHHHCCCEEEcCCceEEECCC
Confidence                       2222211             13899999999999 8999999999999999999999999999999985


Q ss_pred             CCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccc-cCcccCCCCCeeeCCCCCC-CCCCEEEecccCCC---
Q psy14927        978 GDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEE-IGIEKDEKGRVPVNSRFQT-VIPNIFAIGDCIHG--- 1052 (1074)
Q Consensus       978 ~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~-~gl~ld~~G~I~Vd~~~~t-s~~~IyAiGD~~~~--- 1052 (1074)
                      +    |++.+    |++ +|++|++||++|.+|++.   ... .|++.|..|++.||+++++ ++|+|||+|||+..   
T Consensus       239 ~----v~~~~----g~~-~I~~~tvvWaaGv~a~~~---~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~  306 (405)
T COG1252         239 G----VTLKD----GEE-EIPADTVVWAAGVRASPL---LKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDP  306 (405)
T ss_pred             c----EEEcc----CCe-eEecCEEEEcCCCcCChh---hhhcChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCC
Confidence            3    55554    222 799999999999999886   355 4788899999999999995 99999999999862   


Q ss_pred             ---CCcHHHHHHHHHHHHHHhhC
Q psy14927       1053 ---PMLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus      1053 ---~~~~~~A~~~G~~aA~~I~~ 1072 (1074)
                         |+.++.|++||..+|+||..
T Consensus       307 ~p~P~tAQ~A~Qqg~~~a~ni~~  329 (405)
T COG1252         307 RPVPPTAQAAHQQGEYAAKNIKA  329 (405)
T ss_pred             CCCCChhHHHHHHHHHHHHHHHH
Confidence               57899999999999999873

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=99.96  E-value=3.7e-28  Score=294.20  Aligned_cols=274  Identities=29%  Similarity=0.419  Sum_probs=214.7

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhc-ccccc-----------------------------------------
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQA-GDKGV-----------------------------------------  826 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~-~~~g~-----------------------------------------  826 (1074)
                      +.+|+|||+||+|..||+.+++     .++|.. ...||                                         
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~~~  195 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFKN  195 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccccc
Confidence            3469999999999999999998     566642 12222                                         


Q ss_pred             ----------------ccchhhhhhhhhHHHhhhhhhHHHHhhhCC-------eEEEeeeEEEecCCeEEEEeCCCCeeE
Q psy14927        827 ----------------KLNLETMMGTKSAAVKALTGGIAHLFKSNK-------VTQLNGHGKITGPNTVTVIKSDGSTEE  883 (1074)
Q Consensus       827 ----------------~~~~~~~~~~~~~~~~~l~~~~~~~l~~~g-------V~~~~g~v~~id~~~~~v~~~~G~~~~  883 (1074)
                                      .++|..+..+.+...+.+...+...++..+       |+++.|...+++++.+++. .+|  .+
T Consensus       196 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~-~~g--~~  272 (659)
T PTZ00153        196 GKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSE-KSG--KE  272 (659)
T ss_pred             cccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEc-cCC--EE
Confidence                            123444444455555555555666777664       8999999999999887764 355  57


Q ss_pred             EEcCeEEEccCCCCCCCCCCCCCCcceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCC
Q psy14927        884 VKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGI  946 (1074)
Q Consensus       884 i~~d~lIIATG~~p~~ipgi~~~~~~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~  946 (1074)
                      +.||+||||||++|..+|+.+.+...++++++++.+..                 |..|.++|++||++++.++++ +.+
T Consensus       273 i~ad~lIIATGS~P~~P~~~~~~~~~V~ts~d~~~l~~lpk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll-~~~  351 (659)
T PTZ00153        273 FKVKNIIIATGSTPNIPDNIEVDQKSVFTSDTAVKLEGLQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL-PLL  351 (659)
T ss_pred             EECCEEEEcCCCCCCCCCCCCCCCCcEEehHHhhhhhhcCCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc-ccC
Confidence            99999999999998544434334556888888765543                 788889999999999999999 789


Q ss_pred             CHHHHHHHHHHH-HhCCCEEEeCceEEEEEecCCe--EEEEEeeccCCC----------CceEEEcCEEEEccCCcccCC
Q psy14927        947 DGEVAKQFQRIL-GKQGMQFKLGTKVTGASKSGDN--ITVTIENVKDPT----------KKEELSCDALLVCVGRRPYTH 1013 (1074)
Q Consensus       947 ~~~~~~~~~~~l-~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~~~~~g----------~~~~i~~D~vi~a~G~~p~~~ 1013 (1074)
                      ++++...+.+.+ ++.||++++++.|.+|++++++  +.+.+.+.. ++          +.+++++|.||+|+|++||++
T Consensus       352 d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~-~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~  430 (659)
T PTZ00153        352 DADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQ-TGESDGPKKNMNDIKETYVDSCLVATGRKPNTN  430 (659)
T ss_pred             CHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccc-cccccccccccccceEEEcCEEEEEECcccCCc
Confidence            999999998875 6799999999999999875443  445443210 01          124799999999999999999


Q ss_pred             ccCccccCcccCCCCCeeeCCCCCCC------CCCEEEecccCCCCCcHHHHHHHHHHHHHHhhCC
Q psy14927       1014 NLGLEEIGIEKDEKGRVPVNSRFQTV------IPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1014 ~l~l~~~gl~ld~~G~I~Vd~~~~ts------~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      .++++..++++++ |+|.||+++||+      +|||||+|||++.+++++.|..||+.+|.||++.
T Consensus       431 ~L~l~~~gi~~~~-G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~~La~~A~~qg~~aa~ni~g~  495 (659)
T PTZ00153        431 NLGLDKLKIQMKR-GFVSVDEHLRVLREDQEVYDNIFCIGDANGKQMLAHTASHQALKVVDWIEGK  495 (659)
T ss_pred             cCCchhcCCcccC-CEEeECCCCCcCCCCCCCCCCEEEEEecCCCccCHHHHHHHHHHHHHHHcCC
Confidence            8777888988874 999999999997      6999999999998889999999999999999874

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=99.96  E-value=1e-28  Score=308.31  Aligned_cols=267  Identities=18%  Similarity=0.259  Sum_probs=212.3

Q ss_pred             hhhhhhccccchHHHHHHHhh---------hhhhhccccc-cccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-e
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT---------KLFTQAGDKG-VKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-H  863 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~---------~l~e~~~~~g-~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~  863 (1074)
                      ++|||||||+||+.+|..|.+         +++++.+.++ ..+.+..+....  ..+++......++...||+++.| .
T Consensus         4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~--~~~~l~~~~~~~~~~~gI~~~~g~~   81 (847)
T PRK14989          4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHH--TAEELSLVREGFYEKHGIKVLVGER   81 (847)
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCC--CHHHccCCCHHHHHhCCCEEEcCCE
Confidence            359999999999999999864         6777766553 222233333322  23555555667788899999999 5


Q ss_pred             EEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCCCCccee-chhhHhcchH-------------------
Q psy14927        864 GKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVDEETIV-SSTGALSLKK-------------------  921 (1074)
Q Consensus       864 v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~~~v~-t~~~~~~~~~-------------------  921 (1074)
                      |+.+|+....|++.+|  .++.||+||||||++|.  ++||.+....+++ +.++...+..                   
T Consensus        82 V~~Id~~~~~V~~~~G--~~i~yD~LVIATGs~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE  159 (847)
T PRK14989         82 AITINRQEKVIHSSAG--RTVFYDKLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLE  159 (847)
T ss_pred             EEEEeCCCcEEEECCC--cEEECCEEEECCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHH
Confidence            8899998888888888  67999999999999984  4556543333333 5555544321                   


Q ss_pred             -hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCC--eEEEEEeeccCCCCceEEE
Q psy14927        922 -GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGD--NITVTIENVKDPTKKEELS  998 (1074)
Q Consensus       922 -A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~--~~~v~~~~~~~~g~~~~i~  998 (1074)
                       |..|.++|.+||++++.+++++..++++....+.+.|++.||++++++.+++|.++++  ...+.+.+      +++++
T Consensus       160 ~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~d------G~~i~  233 (847)
T PRK14989        160 AAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFAD------GSELE  233 (847)
T ss_pred             HHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECC------CCEEE
Confidence             8888999999999999999885578999999999999999999999999999976432  24455544      45899


Q ss_pred             cCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCC----CcHHHHHHHHHHHHHHhhCC
Q psy14927        999 CDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGP----MLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus       999 ~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~----~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      +|.||+++|.+||+++  +..+|++++++|+|.||++++|+.|+|||+|||+..+    .++..|..+|++||.||+|.
T Consensus       234 ~D~Vv~A~G~rPn~~L--~~~~Gl~~~~~G~I~VD~~l~Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i~g~  310 (847)
T PRK14989        234 VDFIVFSTGIRPQDKL--ATQCGLAVAPRGGIVINDSCQTSDPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHLLGS  310 (847)
T ss_pred             cCEEEECCCcccCchH--HhhcCccCCCCCcEEECCCCcCCCCCEEEeecceeEcCcccccHHHHHHHHHHHHHHhcCC
Confidence            9999999999999986  6788999999999999999999999999999999753    26788999999999999985

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=99.96  E-value=2.1e-28  Score=285.86  Aligned_cols=264  Identities=20%  Similarity=0.272  Sum_probs=197.7

Q ss_pred             hhhhhhccccchHHHHHHHhh-------hhhhhcccccc-ccchh-hhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eE
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGV-KLNLE-TMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HG  864 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~-~~~~~-~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v  864 (1074)
                      ++||||||||||++||..|++       +++++.+.... .+.+. .+......  ........+.+...||+++.| .|
T Consensus         4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~g~~V   81 (396)
T PRK09754          4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSP--QLQQVLPANWWQENNVHLHSGVTI   81 (396)
T ss_pred             CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCc--cccccCCHHHHHHCCCEEEcCCEE
Confidence            349999999999999999988       56665543322 11111 11111100  111111234566789999999 58


Q ss_pred             EEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcceec---hhhHhcchH--------------------
Q psy14927        865 KITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVS---STGALSLKK--------------------  921 (1074)
Q Consensus       865 ~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t---~~~~~~~~~--------------------  921 (1074)
                      +.+|+....|++++|  .++.||+||||||++|..+|..+.....+++   .+++..+..                    
T Consensus        82 ~~id~~~~~v~~~~g--~~~~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~  159 (396)
T PRK09754         82 KTLGRDTRELVLTNG--ESWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLEL  159 (396)
T ss_pred             EEEECCCCEEEECCC--CEEEcCEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHH
Confidence            899998888888888  6799999999999998655544433444554   455433322                    


Q ss_pred             hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCE
Q psy14927        922 GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDA 1001 (1074)
Q Consensus       922 A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~ 1001 (1074)
                      |..|.+.|.+||++++.+.++...+++.+...+.+.+++.||++++++.++++.. ++.+.+.+.+      ++++++|.
T Consensus       160 A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~~~~~v~l~~------g~~i~aD~  232 (396)
T PRK09754        160 AASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVD-GEKVELTLQS------GETLQADV  232 (396)
T ss_pred             HHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc-CCEEEEEECC------CCEEECCE
Confidence            7888889999999999999884457888889999999999999999999999986 3445555544      35799999


Q ss_pred             EEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCC---------CCcHHHHHHHHHHHHHHhhC
Q psy14927       1002 LLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHG---------PMLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus      1002 vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~---------~~~~~~A~~~G~~aA~~I~~ 1072 (1074)
                      ||+++|.+||+.+  +...|+..+  |.|.||++++|+.|||||+|||+..         ++.+..|..||++||.||+|
T Consensus       233 Vv~a~G~~pn~~l--~~~~gl~~~--~gi~vd~~~~ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g  308 (396)
T PRK09754        233 VIYGIGISANDQL--AREANLDTA--NGIVIDEACRTCDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAAAAMLG  308 (396)
T ss_pred             EEECCCCChhhHH--HHhcCCCcC--CCEEECCCCccCCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcC
Confidence            9999999999886  466777654  5699999999999999999999852         13578999999999999997


Q ss_pred             C
Q psy14927       1073 D 1073 (1074)
Q Consensus      1073 ~ 1073 (1074)
                      .
T Consensus       309 ~  309 (396)
T PRK09754        309 L  309 (396)
T ss_pred             C
Confidence            4

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=99.96  E-value=1.7e-28  Score=290.04  Aligned_cols=262  Identities=20%  Similarity=0.268  Sum_probs=196.7

Q ss_pred             hhhhhccccchHHHHHHHhh-------hhhhhcccccccc-chhhhhhhhhHHHhhhhhh-HHHHhhhCCeEEEee-eEE
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVKL-NLETMMGTKSAAVKALTGG-IAHLFKSNKVTQLNG-HGK  865 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~~-~~~~~~~~~~~~~~~l~~~-~~~~l~~~gV~~~~g-~v~  865 (1074)
                      +|||||||+||+.||..+++       +++++.+..+... .++.+........+.+... ...+..+.||+++.+ +|+
T Consensus         3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V~   82 (438)
T PRK13512          3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEVI   82 (438)
T ss_pred             eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEEE
Confidence            49999999999999999987       6777766544321 1222221111111222221 233446679999875 899


Q ss_pred             EecCCeEEEEeCCC---CeeEEEcCeEEEccCCCCCCCCCCCCCCcceech---hhHhcch---------H---------
Q psy14927        866 ITGPNTVTVIKSDG---STEEVKTKNILIATGSEVTPFPGIEVDEETIVSS---TGALSLK---------K---------  921 (1074)
Q Consensus       866 ~id~~~~~v~~~~G---~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t~---~~~~~~~---------~---------  921 (1074)
                      .||++...|.+.++   +..++.||+||||||++|. +|+++.  ..+++.   .+...+.         .         
T Consensus        83 ~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~-~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~i  159 (438)
T PRK13512         83 AINDERQTVTVLNRKTNEQFEESYDKLILSPGASAN-SLGFES--DITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYI  159 (438)
T ss_pred             EEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCC-CCCCCC--CCeEEecCHHHHHHHHHHHhhcCCCEEEEECCCHH
Confidence            99988777776543   2335799999999999985 344543  233322   2221111         1         


Q ss_pred             ----hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEE
Q psy14927        922 ----GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEEL  997 (1074)
Q Consensus       922 ----A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i  997 (1074)
                          |..|+++|++||++++.++++ +.+++++.+.+.+.|++.||+++++++++++++  .  .+++.+      +.++
T Consensus       160 g~E~A~~l~~~g~~Vtli~~~~~l~-~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~--~v~~~~------g~~~  228 (438)
T PRK13512        160 SLEVLENLYERGLHPTLIHRSDKIN-KLMDADMNQPILDELDKREIPYRLNEEIDAING--N--EVTFKS------GKVE  228 (438)
T ss_pred             HHHHHHHHHhCCCcEEEEecccccc-hhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeC--C--EEEECC------CCEE
Confidence                888889999999999999988 789999999999999999999999999999965  2  355443      3478


Q ss_pred             EcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCC----------CCCcHHHHHHHHHHHH
Q psy14927        998 SCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIH----------GPMLAHKAEDEGIVCV 1067 (1074)
Q Consensus       998 ~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~----------~~~~~~~A~~~G~~aA 1067 (1074)
                      ++|.|++++|++||+++  ++..|++++++|+|.||+++||++|||||+|||+.          .+++++.|..+|+++|
T Consensus       229 ~~D~vl~a~G~~pn~~~--l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a  306 (438)
T PRK13512        229 HYDMIIEGVGTHPNSKF--IESSNIKLDDKGFIPVNDKFETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVA  306 (438)
T ss_pred             EeCEEEECcCCCcChHH--HHhcCcccCCCCcEEECCCcccCCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHH
Confidence            99999999999999997  67889999889999999999999999999999986          2357888999999999


Q ss_pred             HHhhCC
Q psy14927       1068 EGIAGD 1073 (1074)
Q Consensus      1068 ~~I~~~ 1073 (1074)
                      +||+|.
T Consensus       307 ~ni~g~  312 (438)
T PRK13512        307 EQIAGN  312 (438)
T ss_pred             HHhcCC
Confidence            999974

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=99.96  E-value=3.8e-28  Score=285.79  Aligned_cols=263  Identities=17%  Similarity=0.209  Sum_probs=199.8

Q ss_pred             cchhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEe
Q psy14927        793 QRQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKIT  867 (1074)
Q Consensus       793 ~k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~i  867 (1074)
                      ++++|||||||+||+.+|..|.+     +++++.+.+...+.++.+..+.... +.+...+...+...+++|+.++|+.|
T Consensus         9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~-~~~~~~~~~~~~~~~~~~i~~~V~~I   87 (424)
T PTZ00318          9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEF-RSICEPVRPALAKLPNRYLRAVVYDV   87 (424)
T ss_pred             CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCCh-HHhHHHHHHHhccCCeEEEEEEEEEE
Confidence            36679999999999999999865     7888777655444444444333222 44555567777788999999999999


Q ss_pred             cCCeEEEEe----------CCCCeeEEEcCeEEEccCCCCC--CCCCCCCCCcceechhhHhc-----------------
Q psy14927        868 GPNTVTVIK----------SDGSTEEVKTKNILIATGSEVT--PFPGIEVDEETIVSSTGALS-----------------  918 (1074)
Q Consensus       868 d~~~~~v~~----------~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~~~v~t~~~~~~-----------------  918 (1074)
                      |++...|++          .+|  .++.||+||||||+.|.  .+||.......+.+..+...                 
T Consensus        88 d~~~~~v~~~~~~~~~~~~~~g--~~i~yD~LViAtGs~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~  165 (424)
T PTZ00318         88 DFEEKRVKCGVVSKSNNANVNT--FSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTT  165 (424)
T ss_pred             EcCCCEEEEecccccccccCCc--eEecCCEEEECCCcccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence            987777766          344  57999999999999973  34554211111111111100                 


Q ss_pred             -------chH-------------hhHHhh--------------cCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCE
Q psy14927        919 -------LKK-------------GSVWGR--------------LGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQ  964 (1074)
Q Consensus       919 -------~~~-------------A~~l~~--------------~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~  964 (1074)
                             ...             |..+..              .+++||+++++++++ +.+++.+++.+.+.|++.||+
T Consensus       166 ~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll-~~~~~~~~~~~~~~L~~~gV~  244 (424)
T PTZ00318        166 SVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL-GSFDQALRKYGQRRLRRLGVD  244 (424)
T ss_pred             ChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc-ccCCHHHHHHHHHHHHHCCCE
Confidence                   001             444443              368999999999998 789999999999999999999


Q ss_pred             EEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCC-CCCCCE
Q psy14927        965 FKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQ-TVIPNI 1043 (1074)
Q Consensus       965 i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~-ts~~~I 1043 (1074)
                      ++++++|+++.++  .  |.+.+      ++++++|++||++|.+|+. +  +..++++++++|+|.||+++| |++|||
T Consensus       245 v~~~~~v~~v~~~--~--v~~~~------g~~i~~d~vi~~~G~~~~~-~--~~~~~l~~~~~G~I~Vd~~l~~~~~~~I  311 (424)
T PTZ00318        245 IRTKTAVKEVLDK--E--VVLKD------GEVIPTGLVVWSTGVGPGP-L--TKQLKVDKTSRGRISVDDHLRVKPIPNV  311 (424)
T ss_pred             EEeCCeEEEEeCC--E--EEECC------CCEEEccEEEEccCCCCcc-h--hhhcCCcccCCCcEEeCCCcccCCCCCE
Confidence            9999999999763  2  44544      3589999999999999984 4  567788888899999999999 699999


Q ss_pred             EEecccCCC-----CCcHHHHHHHHHHHHHHhhC
Q psy14927       1044 FAIGDCIHG-----PMLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus      1044 yAiGD~~~~-----~~~~~~A~~~G~~aA~~I~~ 1072 (1074)
                      ||+|||+..     |+++..|+.||..+|+||.+
T Consensus       312 fAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~  345 (424)
T PTZ00318        312 FALGDCAANEERPLPTLAQVASQQGVYLAKEFNN  345 (424)
T ss_pred             EEEeccccCCCCCCCCchHHHHHHHHHHHHHHHH
Confidence            999999973     66889999999999999974

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=99.96  E-value=3.7e-28  Score=288.94  Aligned_cols=265  Identities=22%  Similarity=0.290  Sum_probs=198.1

Q ss_pred             hhhhhccccchHHHHHHHhh-------hhhhhcccccccc-chhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEE
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVKL-NLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKI  866 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~~-~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~  866 (1074)
                      +||||||||||+++|..|++       +++++.+..+... .++.+..........+.....+.+.+.||+++.+ .|+.
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~   81 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVVK   81 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEEE
Confidence            49999999999999999987       6788777553221 1111111111112333444556677889999876 7888


Q ss_pred             ecCCeEEEEeCC---CCeeEEE--cCeEEEccCCCCC--CCCCCCCCCcceec---hhhHhcch---------H------
Q psy14927        867 TGPNTVTVIKSD---GSTEEVK--TKNILIATGSEVT--PFPGIEVDEETIVS---STGALSLK---------K------  921 (1074)
Q Consensus       867 id~~~~~v~~~~---G~~~~i~--~d~lIIATG~~p~--~ipgi~~~~~~v~t---~~~~~~~~---------~------  921 (1074)
                      +|++...|.+.+   |  .++.  ||+||||||++|.  ++||+..  .++++   ..+...+.         .      
T Consensus        82 id~~~~~v~~~~~~~~--~~~~~~yd~lviAtG~~~~~~~i~g~~~--~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGg  157 (444)
T PRK09564         82 VDAKNKTITVKNLKTG--SIFNDTYDKLMIATGARPIIPPIKNINL--ENVYTLKSMEDGLALKELLKDEEIKNIVIIGA  157 (444)
T ss_pred             EECCCCEEEEEECCCC--CEEEecCCEEEECCCCCCCCCCCCCcCC--CCEEEECCHHHHHHHHHHHhhcCCCEEEEECC
Confidence            887665665543   4  3455  9999999999983  4455432  23432   22222221         1      


Q ss_pred             -------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCc
Q psy14927        922 -------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKK  994 (1074)
Q Consensus       922 -------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~  994 (1074)
                             |..+.+.|.+|+++++.++++++.+++++.+.+.+.+++.||++++++++.++.++++...+.. +      +
T Consensus       158 G~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~-~------~  230 (444)
T PRK09564        158 GFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVT-D------K  230 (444)
T ss_pred             CHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEe-C------C
Confidence                   7788889999999999998884468999999999999999999999999999976443333332 2      2


Q ss_pred             eEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCC----------CCcHHHHHHHHH
Q psy14927        995 EELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHG----------PMLAHKAEDEGI 1064 (1074)
Q Consensus       995 ~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~----------~~~~~~A~~~G~ 1064 (1074)
                      .++++|.+|+|+|++|++++  ++..|++++++|+|.||++++|++|||||+|||+..          +++++.|..||+
T Consensus       231 ~~i~~d~vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~  308 (444)
T PRK09564        231 GEYEADVVIVATGVKPNTEF--LEDTGLKTLKNGAIIVDEYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGR  308 (444)
T ss_pred             CEEEcCEEEECcCCCcCHHH--HHhcCccccCCCCEEECCCcccCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHH
Confidence            36999999999999999987  678899988899999999999999999999999863          457899999999


Q ss_pred             HHHHHhhCC
Q psy14927       1065 VCVEGIAGD 1073 (1074)
Q Consensus      1065 ~aA~~I~~~ 1073 (1074)
                      ++|+||+|.
T Consensus       309 ~~a~ni~g~  317 (444)
T PRK09564        309 MVGENLAGR  317 (444)
T ss_pred             HHHHHhcCC
Confidence            999999974

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=99.95  E-value=2.4e-27  Score=275.47  Aligned_cols=263  Identities=19%  Similarity=0.272  Sum_probs=197.2

Q ss_pred             hhhhhhccccchHHHHHHHhh-------hhhhhcccc-ccccchhhhhhhhhHHHhhhhh-hHHHHhhhCCeEEEee-eE
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-------KLFTQAGDK-GVKLNLETMMGTKSAAVKALTG-GIAHLFKSNKVTQLNG-HG  864 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-------~l~e~~~~~-g~~~~~~~~~~~~~~~~~~l~~-~~~~~l~~~gV~~~~g-~v  864 (1074)
                      ++|||||||+||+.+|..+++       +++++.+.. ...+.+........ ...++.. ...+++.+.||+++.+ +|
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~gv~~~~~~~V   81 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQ-RADDLTRQSAGEFAEQFNLRLFPHTWV   81 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCC-CHHHhhcCCHHHHHHhCCCEEECCCEE
Confidence            359999999999999999987       567665532 22223333332221 1234333 3456677889999987 68


Q ss_pred             EEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcceec---hhhHhcch-------H-------------
Q psy14927        865 KITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVS---STGALSLK-------K-------------  921 (1074)
Q Consensus       865 ~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t---~~~~~~~~-------~-------------  921 (1074)
                      +.+|+....+++ +|  ..+.||+||||||++|.. |.+++... +++   ..++....       .             
T Consensus        82 ~~id~~~~~v~~-~~--~~~~yd~LVlATG~~~~~-p~i~G~~~-v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~  156 (377)
T PRK04965         82 TDIDAEAQVVKS-QG--NQWQYDKLVLATGASAFV-PPIPGREL-MLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTEL  156 (377)
T ss_pred             EEEECCCCEEEE-CC--eEEeCCEEEECCCCCCCC-CCCCCCce-EEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHH
Confidence            899987777765 44  479999999999999842 23433222 333   23332111       1             


Q ss_pred             hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCE
Q psy14927        922 GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDA 1001 (1074)
Q Consensus       922 A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~ 1001 (1074)
                      |..|.+.|.+||++++.+.+++..+++.....+.+.+++.||++++++.+.++..+++...+.+.+      +.++++|.
T Consensus       157 A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~------g~~i~~D~  230 (377)
T PRK04965        157 AMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDS------GRSIEVDA  230 (377)
T ss_pred             HHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcC------CcEEECCE
Confidence            777888899999999999888445688899999999999999999999999998866666666544      45899999


Q ss_pred             EEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCC----CcHHHHHHHHHHHHHHhhCC
Q psy14927       1002 LLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGP----MLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1002 vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~----~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      ||+|+|.+|++.+  +...|++.+ +| |.||++++|+.|||||+|||+..+    +.+..|..||+.+|.||+|.
T Consensus       231 vI~a~G~~p~~~l--~~~~gl~~~-~g-i~vd~~l~ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~g~  302 (377)
T PRK04965        231 VIAAAGLRPNTAL--ARRAGLAVN-RG-IVVDSYLQTSAPDIYALGDCAEINGQVLPFLQPIQLSAMALAKNLLGQ  302 (377)
T ss_pred             EEECcCCCcchHH--HHHCCCCcC-CC-EEECCCcccCCCCEEEeeecEeECCceeehHHHHHHHHHHHHHHhcCC
Confidence            9999999999987  567788875 35 999999999999999999998743    24667899999999999985

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=99.95  E-value=3e-27  Score=296.03  Aligned_cols=264  Identities=18%  Similarity=0.284  Sum_probs=207.0

Q ss_pred             hhhhccccchHHHHHHHhh--------hhhhhcccccc-ccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEE
Q psy14927        797 VLNTLGNCAAVQANYHLAT--------KLFTQAGDKGV-KLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKI  866 (1074)
Q Consensus       797 VviiGgG~AGl~aA~~la~--------~l~e~~~~~g~-~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~  866 (1074)
                      |||||||+||+.+|..+.+        +++++.+.++. .+.+..+..+.. ..+++.....+++.+.||+++.| +|+.
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~-~~~~l~~~~~~~~~~~gv~~~~g~~V~~   79 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEA-DLDDITLNSKDWYEKHGITLYTGETVIQ   79 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCC-CHHHccCCCHHHHHHCCCEEEcCCeEEE
Confidence            6899999999999998866        67777776542 222333433322 22555555677788899999999 6999


Q ss_pred             ecCCeEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCCCCccee-chhhHhcchH--------------------hh
Q psy14927        867 TGPNTVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVDEETIV-SSTGALSLKK--------------------GS  923 (1074)
Q Consensus       867 id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~~~v~-t~~~~~~~~~--------------------A~  923 (1074)
                      +|+....|++.+|  .++.||+||||||+.|.  ++||....+.+.+ +.++...+..                    |.
T Consensus        80 Id~~~k~V~~~~g--~~~~yD~LVlATGs~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~  157 (785)
T TIGR02374        80 IDTDQKQVITDAG--RTLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAV  157 (785)
T ss_pred             EECCCCEEEECCC--cEeeCCEEEECCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHH
Confidence            9998888988888  68999999999999984  4555433222222 3333332221                    88


Q ss_pred             HHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEE
Q psy14927        924 VWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALL 1003 (1074)
Q Consensus       924 ~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi 1003 (1074)
                      .|++.|.+||++++.+.++...+++.....+.+.+++.||++++++.++++.+++....|.+.+      ++++++|+||
T Consensus       158 ~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~d------G~~i~~D~Vi  231 (785)
T TIGR02374       158 GLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKD------GSSLEADLIV  231 (785)
T ss_pred             HHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECC------CCEEEcCEEE
Confidence            8899999999999999988566899999999999999999999999999998765445566655      4589999999


Q ss_pred             EccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCC----CcHHHHHHHHHHHHHHhhCC
Q psy14927       1004 VCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGP----MLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1004 ~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~----~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      +++|.+|++++  +..+|++++  |.|.||++++|+.|+|||+|||+..+    .++..|..||+++|.||+|.
T Consensus       232 ~a~G~~Pn~~l--a~~~gl~~~--ggI~Vd~~~~Ts~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~ni~g~  301 (785)
T TIGR02374       232 MAAGIRPNDEL--AVSAGIKVN--RGIIVNDSMQTSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHICGV  301 (785)
T ss_pred             ECCCCCcCcHH--HHhcCCccC--CCEEECCCcccCCCCEEEeeecceeCCcccccHHHHHHHHHHHHHHhcCC
Confidence            99999999987  567788775  66999999999999999999998743    25677899999999999975

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=99.95  E-value=9.8e-27  Score=269.44  Aligned_cols=257  Identities=19%  Similarity=0.264  Sum_probs=194.7

Q ss_pred             hhhhhccccchHHHHHHHhh--------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEe
Q psy14927        796 VVLNTLGNCAAVQANYHLAT--------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKIT  867 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~--------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~i  867 (1074)
                      +|||||||+||+.+|..+++        +++++.+.......++.+..+.. ...++...+.++++..||+|+.++|+.+
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~gv~~~~~~v~~i   79 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHY-SLDEIRIDLRRLARQAGARFVIAEATGI   79 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeC-CHHHhcccHHHHHHhcCCEEEEEEEEEE
Confidence            48999999999999999953        77877765544333333333322 1245666677888888999999999999


Q ss_pred             cCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCccee---chhhHhc-------------ch-H---------
Q psy14927        868 GPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIV---SSTGALS-------------LK-K---------  921 (1074)
Q Consensus       868 d~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~---t~~~~~~-------------~~-~---------  921 (1074)
                      |+....|.+.+|  .++.||+||||||+.|. .|.+++...+++   +.+++..             .. .         
T Consensus        80 d~~~~~V~~~~g--~~~~yD~LviAtG~~~~-~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~  156 (364)
T TIGR03169        80 DPDRRKVLLANR--PPLSYDVLSLDVGSTTP-LSGVEGAADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAA  156 (364)
T ss_pred             ecccCEEEECCC--CcccccEEEEccCCCCC-CCCCCcccccccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHH
Confidence            998888999888  67999999999999984 233443333322   1111111             00 1         


Q ss_pred             ----hhHHhh----cC--CcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCC
Q psy14927        922 ----GSVWGR----LG--AEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDP  991 (1074)
Q Consensus       922 ----A~~l~~----~G--~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~  991 (1074)
                          |..+.+    .|  .+||++ +.+.++ +.+++.+...+.+.|++.||++++++.++++.+  +  .+.+.+    
T Consensus       157 g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l-~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~--~v~~~~----  226 (364)
T TIGR03169       157 GVEIALALRRRLPKRGLRGQVTLI-AGASLL-PGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPD--G--ALILAD----  226 (364)
T ss_pred             HHHHHHHHHHHHHhcCCCceEEEE-eCCccc-ccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcC--C--eEEeCC----
Confidence                444543    34  489999 566776 678899999999999999999999999999865  2  344443    


Q ss_pred             CCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCC-CCCCEEEecccCCC-----CCcHHHHHHHHHH
Q psy14927        992 TKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQT-VIPNIFAIGDCIHG-----PMLAHKAEDEGIV 1065 (1074)
Q Consensus       992 g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~t-s~~~IyAiGD~~~~-----~~~~~~A~~~G~~ 1065 (1074)
                        +.++++|.||+++|.+|++.   +...++.++++|+|.||++++| ++|||||+|||+..     |+.+..|+.||+.
T Consensus       227 --g~~i~~D~vi~a~G~~p~~~---l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~  301 (364)
T TIGR03169       227 --GRTLPADAILWATGARAPPW---LAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPI  301 (364)
T ss_pred             --CCEEecCEEEEccCCChhhH---HHHcCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHH
Confidence              45899999999999999864   4567888888999999999998 99999999999863     4467889999999


Q ss_pred             HHHHhh
Q psy14927       1066 CVEGIA 1071 (1074)
Q Consensus      1066 aA~~I~ 1071 (1074)
                      +|+||.
T Consensus       302 ~a~ni~  307 (364)
T TIGR03169       302 LAANLR  307 (364)
T ss_pred             HHHHHH
Confidence            999986

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.95  E-value=1.2e-26  Score=261.41  Aligned_cols=263  Identities=21%  Similarity=0.252  Sum_probs=190.7

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhccccccccchh----hhhhhhh-HHHhhhhhhHHHHhhhCCeEEEeeeEE
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLE----TMMGTKS-AAVKALTGGIAHLFKSNKVTQLNGHGK  865 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~----~~~~~~~-~~~~~l~~~~~~~l~~~gV~~~~g~v~  865 (1074)
                      +|+||||||+|+++|..|++     +++|+.+ .|+.+...    .++.... ....++...+.+.+.+.|++++.++|+
T Consensus         2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~v~   80 (300)
T TIGR01292         2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIYEEVI   80 (300)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEEEEEE
Confidence            48999999999999999988     7888765 44433211    1121110 111355566778888899999998888


Q ss_pred             EecCC--eEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCCC-Cccee---chhhHh-cchH-------------hh
Q psy14927        866 ITGPN--TVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVD-EETIV---SSTGAL-SLKK-------------GS  923 (1074)
Q Consensus       866 ~id~~--~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~-~~~v~---t~~~~~-~~~~-------------A~  923 (1074)
                      .+++.  .+.+.+.+|  .++.||+||+|||+.|.  .+|+.... ...+.   ..+... ....             |.
T Consensus        81 ~v~~~~~~~~v~~~~~--~~~~~d~liiAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~  158 (300)
T TIGR01292        81 KVDLSDRPFKVKTGDG--KEYTAKAVIIATGASARKLGIPGEDEFLGRGVSYCATCDGPFFKNKEVAVVGGGDSAIEEAL  158 (300)
T ss_pred             EEEecCCeeEEEeCCC--CEEEeCEEEECCCCCcccCCCCChhhcCCccEEEeeecChhhcCCCEEEEECCChHHHHHHH
Confidence            88764  356666666  58999999999999874  24443211 01111   111111 1111             77


Q ss_pred             HHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhC-CCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEE
Q psy14927        924 VWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQ-GMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDAL 1002 (1074)
Q Consensus       924 ~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~-gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~v 1002 (1074)
                      .+.+.+.+|+++++.+.+.   .    ...+.+.+++. ||++++++.++++.+++....+++.+.. ++++.++++|.|
T Consensus       159 ~l~~~~~~V~~v~~~~~~~---~----~~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~-~g~~~~i~~D~v  230 (300)
T TIGR01292       159 YLTRIAKKVTLVHRRDKFR---A----EKILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTV-TGEEEELKVDGV  230 (300)
T ss_pred             HHHhhcCEEEEEEeCcccC---c----CHHHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecC-CCceEEEEccEE
Confidence            7788899999999987654   1    23455667777 9999999999999875533445555422 356688999999


Q ss_pred             EEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCC-CCCcHHHHHHHHHHHHHHhhC
Q psy14927       1003 LVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIH-GPMLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus      1003 i~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~-~~~~~~~A~~~G~~aA~~I~~ 1072 (1074)
                      |+|+|++|+.++  +... +.++++|+|.||++++|++||||++|||++ .++.+..|+.+|+.||.+|..
T Consensus       231 i~a~G~~~~~~~--l~~~-~~~~~~g~i~v~~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~  298 (300)
T TIGR01292       231 FIAIGHEPNTEL--LKGL-LELDEGGYIVTDEGMRTSVPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAER  298 (300)
T ss_pred             EEeeCCCCChHH--HHHh-heecCCCcEEECCCCccCCCCEEEeecccCcchhhhhhhhhhHHHHHHHHHh
Confidence            999999999987  4455 677888999999999999999999999998 577899999999999999864

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=2.1e-26  Score=254.51  Aligned_cols=261  Identities=21%  Similarity=0.277  Sum_probs=200.8

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccccccccc----hhhhhhhhh-HHHhhhhhhHHHHhhhCCeEEEeeeE
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLN----LETMMGTKS-AAVKALTGGIAHLFKSNKVTQLNGHG  864 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~----~~~~~~~~~-~~~~~l~~~~~~~l~~~gV~~~~g~v  864 (1074)
                      .+|+|||||||||+||++++|     +++......|+++.    ..++|.... ....++...+.++....|+++....|
T Consensus         4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~~~v   83 (305)
T COG0492           4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVEDEV   83 (305)
T ss_pred             eeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEEEEE
Confidence            459999999999999999999     45555555554442    333444333 23466777788888899999999888


Q ss_pred             EEecCC--eEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCC---CCC-cceechhhHhcchH-------------hh
Q psy14927        865 KITGPN--TVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIE---VDE-ETIVSSTGALSLKK-------------GS  923 (1074)
Q Consensus       865 ~~id~~--~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~---~~~-~~v~t~~~~~~~~~-------------A~  923 (1074)
                      ..++..  .+.|.+.+|   ++++++||||||..+.  .+|+-.   +.+ .++.+++.++..+.             |.
T Consensus        84 ~~v~~~~~~F~v~t~~~---~~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~cdg~~~~k~v~ViGgG~sAve~Al  160 (305)
T COG0492          84 EKVELEGGPFKVKTDKG---TYEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDGFFKGKDVVVIGGGDSAVEEAL  160 (305)
T ss_pred             EEEeecCceEEEEECCC---eEEEeEEEECcCCcccCCCCCcchhhcCCceEEeeecCccccCCeEEEEcCCHHHHHHHH
Confidence            888765  688988888   4999999999999873  233211   111 13446666333333             89


Q ss_pred             HHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhC-CCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEE
Q psy14927        924 VWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQ-GMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDAL 1002 (1074)
Q Consensus       924 ~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~-gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~v 1002 (1074)
                      +|.+.+++||+++|++.+..   .    +.+.+.+++. +|++++++.+.++.+++ ...|++++..  ++..++++|.+
T Consensus       161 ~L~~~a~~Vtlv~r~~~~ra---~----~~~~~~l~~~~~i~~~~~~~i~ei~G~~-v~~v~l~~~~--~~~~~~~~~gv  230 (305)
T COG0492         161 YLSKIAKKVTLVHRRDEFRA---E----EILVERLKKNVKIEVLTNTVVKEILGDD-VEGVVLKNVK--GEEKELPVDGV  230 (305)
T ss_pred             HHHHhcCeEEEEecCcccCc---C----HHHHHHHHhcCCeEEEeCCceeEEecCc-cceEEEEecC--CceEEEEeceE
Confidence            99999999999999998872   2    3344555555 89999999999999975 4456667632  56779999999


Q ss_pred             EEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCC-cHHHHHHHHHHHHHHhh
Q psy14927       1003 LVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPM-LAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1003 i~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~-~~~~A~~~G~~aA~~I~ 1071 (1074)
                      ++++|..|++++  +...++ ++++|+|.||+.++||+|||||+||++..+. ++..|..+|.+||.++.
T Consensus       231 f~~iG~~p~~~~--~~~~~~-~~~~g~I~v~~~~~TsvpGifAaGDv~~~~~rqi~ta~~~G~~Aa~~a~  297 (305)
T COG0492         231 FIAIGHLPNTEL--LKGLGV-LDENGYIVVDEEMETSVPGIFAAGDVADKNGRQIATAAGDGAIAALSAE  297 (305)
T ss_pred             EEecCCCCchHH--Hhhccc-cCCCCcEEcCCCcccCCCCEEEeEeeccCcccEEeehhhhHHHHHHHHH
Confidence            999999999988  566666 8999999999999999999999999998754 78899999999998764

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=99.94  E-value=4.4e-26  Score=281.47  Aligned_cols=260  Identities=19%  Similarity=0.199  Sum_probs=189.1

Q ss_pred             cchhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEe
Q psy14927        793 QRQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKIT  867 (1074)
Q Consensus       793 ~k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~i  867 (1074)
                      +.++|+||||||||++||++|++     ++|++.+..||.+... ++.++  ...++.....+.+...||+|+.|+.+.+
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~-IP~~R--lp~evL~~die~l~~~GVe~~~gt~Vdi  614 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNI-IPQFR--IPAELIQHDIEFVKAHGVKFEFGCSPDL  614 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeee-ccccc--ccHHHHHHHHHHHHHcCCEEEeCceeEE
Confidence            35669999999999999999999     8999988888876542 33222  1234445556777888999999954322


Q ss_pred             cCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcceechhhHhcch----------H--------------hh
Q psy14927        868 GPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLK----------K--------------GS  923 (1074)
Q Consensus       868 d~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t~~~~~~~~----------~--------------A~  923 (1074)
                             .+++.  ....||+||||||++++..+++++...++++..+++...          +              |.
T Consensus       615 -------~le~L--~~~gYDaVILATGA~~~~~l~IpG~~~gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar  685 (1019)
T PRK09853        615 -------TVEQL--KNEGYDYVVVAIGADKNGGLKLEGGNQNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAAR  685 (1019)
T ss_pred             -------Ehhhh--eeccCCEEEECcCCCCCCCCCCCCccCCceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHH
Confidence                   22222  346699999999998644444555445566555544321          1              55


Q ss_pred             HHhhc-C-CcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEE---Eeecc--------C
Q psy14927        924 VWGRL-G-AEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVT---IENVK--------D  990 (1074)
Q Consensus       924 ~l~~~-G-~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~---~~~~~--------~  990 (1074)
                      .+.+. | .+||+++|++.-.+|..++++    .+.+ +.||++++++.+.++.+++ .+.+.   +...+        .
T Consensus       686 ~a~RlgGakeVTLVyRr~~~~MPA~~eEl----e~Al-eeGVe~~~~~~p~~I~~dG-~l~~~~~~lg~~d~~Gr~~~v~  759 (1019)
T PRK09853        686 AALRVPGVEKVTVVYRRTKQEMPAWREEY----EEAL-EDGVEFKELLNPESFDADG-TLTCRVMKLGEPDESGRRRPVE  759 (1019)
T ss_pred             HHHhcCCCceEEEEEccCcccccccHHHH----HHHH-HcCCEEEeCCceEEEEcCC-cEEEEEEEeecccCCCceEEee
Confidence            56666 4 489999998743325544443    2333 4799999999999997532 22221   11000        0


Q ss_pred             CCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHh
Q psy14927        991 PTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGI 1070 (1074)
Q Consensus       991 ~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I 1070 (1074)
                      ++++.++++|.||+|+|++|++++  +...|++++++|+|.||++++|+.|||||+|||+++|.++..|+.+|+.||.+|
T Consensus       760 tg~~~~I~aD~VIvAIG~~Pntel--le~~GL~ld~~G~I~VDetlqTs~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI  837 (1019)
T PRK09853        760 TGETVTLEADTVITAIGEQVDTEL--LKANGIPLDKKGWPVVDANGETSLTNVYMIGDVQRGPSTIVAAIADARRAADAI  837 (1019)
T ss_pred             CCCeEEEEeCEEEECCCCcCChhH--HHhcCccccCCCCEEeCCCcccCCCCEEEEeccccCchHHHHHHHHHHHHHHHH
Confidence            245678999999999999999998  567889999999999999999999999999999998989999999999999999


Q ss_pred             hC
Q psy14927       1071 AG 1072 (1074)
Q Consensus      1071 ~~ 1072 (1074)
                      ++
T Consensus       838 ~~  839 (1019)
T PRK09853        838 LS  839 (1019)
T ss_pred             hh
Confidence            86

>PRK12831 putative oxidoreductase; Provisional

Probab=99.94  E-value=3e-26  Score=271.35  Aligned_cols=262  Identities=18%  Similarity=0.139  Sum_probs=186.8

Q ss_pred             cchhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEe
Q psy14927        793 QRQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKIT  867 (1074)
Q Consensus       793 ~k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~i  867 (1074)
                      +.++|+||||||||++||++|++     ++|++.+..||.+.+. ++.+.. ..+.+.....+.+...||+|+.++... 
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g-ip~~~l-~~~~~~~~~~~~~~~~gv~i~~~~~v~-  215 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYG-IPEFRL-PKETVVKKEIENIKKLGVKIETNVVVG-  215 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeec-CCCccC-CccHHHHHHHHHHHHcCCEEEcCCEEC-
Confidence            35669999999999999999999     8899888888776442 222110 112255555677888899999996431 


Q ss_pred             cCCeEEEEeCCCCeeEEEcCeEEEccCC-CCC--CCCCCCCCCcceechhhHhcc------------------hH-----
Q psy14927        868 GPNTVTVIKSDGSTEEVKTKNILIATGS-EVT--PFPGIEVDEETIVSSTGALSL------------------KK-----  921 (1074)
Q Consensus       868 d~~~~~v~~~~G~~~~i~~d~lIIATG~-~p~--~ipgi~~~~~~v~t~~~~~~~------------------~~-----  921 (1074)
                          ..+++++. ...+.||+||||||+ .|+  ++||.  +...+++..+++..                  +.     
T Consensus       216 ----~~v~~~~~-~~~~~~d~viiAtGa~~~~~l~ipG~--~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIG  288 (464)
T PRK12831        216 ----KTVTIDEL-LEEEGFDAVFIGSGAGLPKFMGIPGE--NLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVG  288 (464)
T ss_pred             ----CcCCHHHH-HhccCCCEEEEeCCCCCCCCCCCCCc--CCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEEC
Confidence                11222221 023579999999999 464  34443  23457776665422                  11     


Q ss_pred             --------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe--EEEEEeec---
Q psy14927        922 --------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN--ITVTIENV---  988 (1074)
Q Consensus       922 --------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~~---  988 (1074)
                              |..+.++|.+||++++.+...++....++     +.+.+.||++++++.+.++..++++  ..|++...   
T Consensus       289 gG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~-----~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~  363 (464)
T PRK12831        289 GGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEV-----HHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELG  363 (464)
T ss_pred             CcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHH-----HHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEec
Confidence                    78888999999999987643323322222     3456789999999999999764332  22333210   


Q ss_pred             --cC---------CCCceEEEcCEEEEccCCcccCCccCccc-cCcccCCCCCeeeCCC-CCCCCCCEEEecccCCCCCc
Q psy14927        989 --KD---------PTKKEELSCDALLVCVGRRPYTHNLGLEE-IGIEKDEKGRVPVNSR-FQTVIPNIFAIGDCIHGPML 1055 (1074)
Q Consensus       989 --~~---------~g~~~~i~~D~vi~a~G~~p~~~~l~l~~-~gl~ld~~G~I~Vd~~-~~ts~~~IyAiGD~~~~~~~ 1055 (1074)
                        +.         +|+..++++|+||+++|+.|++.+  +.. .|++++++|+|.||++ ++||.|||||+|||+.++.+
T Consensus       364 ~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~--~~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~~~  441 (464)
T PRK12831        364 EPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLI--SSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTGAAT  441 (464)
T ss_pred             CcCCCCCccceecCCceEEEECCEEEECCCCCCChhh--hcccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCCchH
Confidence              00         133457999999999999999986  344 6888999999999987 99999999999999998889


Q ss_pred             HHHHHHHHHHHHHHhh
Q psy14927       1056 AHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1056 ~~~A~~~G~~aA~~I~ 1071 (1074)
                      +..|+.+|+.||.+|.
T Consensus       442 v~~Ai~~G~~AA~~I~  457 (464)
T PRK12831        442 VILAMGAGKKAAKAID  457 (464)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999985

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=99.94  E-value=2.5e-26  Score=271.66  Aligned_cols=259  Identities=19%  Similarity=0.169  Sum_probs=188.7

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEec
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITG  868 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id  868 (1074)
                      .++|+||||||+|+++|..|++     ++|++.+..|+.+.+. ++.+.  ...++.....+.+.+.||+|+.++++.  
T Consensus       133 ~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g-ip~~~--~~~~~~~~~~~~l~~~gv~~~~~~~v~--  207 (449)
T TIGR01316       133 HKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYG-IPEFR--LPKEIVVTEIKTLKKLGVTFRMNFLVG--  207 (449)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeec-CCCcc--CCHHHHHHHHHHHHhCCcEEEeCCccC--
Confidence            5569999999999999999998     8999888888776543 22211  113444445566778899999996431  


Q ss_pred             CCeEEEEeCCCCeeEEEcCeEEEccCC-CCC--CCCCCCCCCcceechhhHhcc-------------------hH-----
Q psy14927        869 PNTVTVIKSDGSTEEVKTKNILIATGS-EVT--PFPGIEVDEETIVSSTGALSL-------------------KK-----  921 (1074)
Q Consensus       869 ~~~~~v~~~~G~~~~i~~d~lIIATG~-~p~--~ipgi~~~~~~v~t~~~~~~~-------------------~~-----  921 (1074)
                         ..+++.++   ...||+||||||+ .|.  ++||.+  ..++++..+++..                   +.     
T Consensus       208 ---~~v~~~~~---~~~yd~viiAtGa~~p~~~~ipG~~--~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIG  279 (449)
T TIGR01316       208 ---KTATLEEL---FSQYDAVFIGTGAGLPKLMNIPGEE--LCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIG  279 (449)
T ss_pred             ---CcCCHHHH---HhhCCEEEEeCCCCCCCcCCCCCCC--CCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEEC
Confidence               22333332   3469999999998 453  344432  3346655544311                   11     


Q ss_pred             --------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe--EEEEEeec---
Q psy14927        922 --------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN--ITVTIENV---  988 (1074)
Q Consensus       922 --------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~~---  988 (1074)
                              |..+.++|.+||+++++++..++..     ....+.+++.||++++++.++++.+++++  ..|++...   
T Consensus       280 gG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~-----~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~  354 (449)
T TIGR01316       280 GGNTAVDSARTALRLGAEVHCLYRRTREDMTAR-----VEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQ  354 (449)
T ss_pred             CCHHHHHHHHHHHHcCCEEEEEeecCcccCCCC-----HHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEec
Confidence                    8888899999999998875432222     12235678899999999999999864332  23444310   


Q ss_pred             ----cC-------CCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcHH
Q psy14927        989 ----KD-------PTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAH 1057 (1074)
Q Consensus       989 ----~~-------~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~~ 1057 (1074)
                          ++       +++..++++|+||+++|+.|++.+  ++..|++++++|+|.||++++|+.|||||+|||++++.++.
T Consensus       355 ~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~--l~~~gl~~~~~G~i~vd~~~~Ts~~~VfA~GD~~~g~~~v~  432 (449)
T TIGR01316       355 EQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIM--AETTRLKTSERGTIVVDEDQRTSIPGVFAGGDIILGAATVI  432 (449)
T ss_pred             CcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchh--hhccCcccCCCCeEEeCCCCccCCCCEEEecCCCCCcHHHH
Confidence                00       133457999999999999999876  57788999999999999999999999999999998888899


Q ss_pred             HHHHHHHHHHHHhhC
Q psy14927       1058 KAEDEGIVCVEGIAG 1072 (1074)
Q Consensus      1058 ~A~~~G~~aA~~I~~ 1072 (1074)
                      .|+.+|+.||.+|..
T Consensus       433 ~Ai~~G~~AA~~I~~  447 (449)
T TIGR01316       433 RAMGQGKRAAKSINE  447 (449)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999999863

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=99.93  E-value=1.5e-25  Score=278.61  Aligned_cols=260  Identities=22%  Similarity=0.195  Sum_probs=186.2

Q ss_pred             cchhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEe
Q psy14927        793 QRQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKIT  867 (1074)
Q Consensus       793 ~k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~i  867 (1074)
                      ++++|+||||||||++||++|++     ++||+.+..||.+... ++.++  ...++.....+.+...||+|+.|.... 
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~-IP~~r--lp~e~l~~~ie~l~~~GVe~~~g~~~d-  611 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNI-IPEFR--ISAESIQKDIELVKFHGVEFKYGCSPD-  611 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeec-ccccC--CCHHHHHHHHHHHHhcCcEEEEecccc-
Confidence            35669999999999999999999     8999998888887543 22221  113344445567777899999983211 


Q ss_pred             cCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcceechhhHhcc----------hH--------------hh
Q psy14927        868 GPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSL----------KK--------------GS  923 (1074)
Q Consensus       868 d~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t~~~~~~~----------~~--------------A~  923 (1074)
                          ..  +.+.  ....||+||||||++++..+++++....+++..+++..          .+              |.
T Consensus       612 ----~~--ve~l--~~~gYDaVIIATGA~~~~~l~I~G~~~~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar  683 (1012)
T TIGR03315       612 ----LT--VAEL--KNQGYKYVILAIGAWKHGPLRLEGGGERVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAAR  683 (1012)
T ss_pred             ----eE--hhhh--hcccccEEEECCCCCCCCCCCcCCCCcceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHH
Confidence                11  1222  34569999999999864444455545566665554431          11              55


Q ss_pred             HHhhc-CC-cEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEe---ecc--------C
Q psy14927        924 VWGRL-GA-EVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIE---NVK--------D  990 (1074)
Q Consensus       924 ~l~~~-G~-~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~---~~~--------~  990 (1074)
                      .+.+. |. +||+++|++.-.++...+++    .+.+ +.||+++++..+.++.+  +.+.+...   ..+        .
T Consensus       684 ~a~Rl~Ga~kVtLVyRr~~~~Mpa~~eEl----~~al-eeGVe~~~~~~p~~I~~--g~l~v~~~~l~~~d~sGr~~~v~  756 (1012)
T TIGR03315       684 AALRVPGVEKVTVVYRRTKRYMPASREEL----EEAL-EDGVDFKELLSPESFED--GTLTCEVMKLGEPDASGRRRPVG  756 (1012)
T ss_pred             HHHHhCCCceEEEEEccCccccccCHHHH----HHHH-HcCCEEEeCCceEEEEC--CeEEEEEEEeecccCCCceeeec
Confidence            55555 75 89999988743325554443    2333 57999999999988873  33332211   000        0


Q ss_pred             CCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCC-CCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHH
Q psy14927        991 PTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSR-FQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEG 1069 (1074)
Q Consensus       991 ~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~-~~ts~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~ 1069 (1074)
                      +|++.++++|+||+|+|++|++++  +...|++++.+|+|.||+. ++|+.|||||+|||+.+|.++..|+.+|+.||.+
T Consensus       757 ~Gee~~I~aD~VIvAiG~~Pnt~l--le~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP~tVv~AIaqGr~AA~n  834 (1012)
T TIGR03315       757 TGETVDLPADTVIAAVGEQVDTDL--LQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGPATIVEAIADGRKAANA  834 (1012)
T ss_pred             CCCeEEEEeCEEEEecCCcCChHH--HHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCccHHHHHHHHHHHHHHH
Confidence            355568999999999999999997  5678999999999999975 8999999999999998898999999999999999


Q ss_pred             hhCC
Q psy14927       1070 IAGD 1073 (1074)
Q Consensus      1070 I~~~ 1073 (1074)
                      |++.
T Consensus       835 Il~~  838 (1012)
T TIGR03315       835 ILSR  838 (1012)
T ss_pred             Hhcc
Confidence            9853

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=99.93  E-value=1.8e-25  Score=269.03  Aligned_cols=263  Identities=20%  Similarity=0.293  Sum_probs=190.7

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccc----hhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-e
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLN----LETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-H  863 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~----~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~  863 (1074)
                      ..+|+||||||||++||.++++     ++++.  ..|+++.    +..++........++...+.+.++..||+++.+ +
T Consensus       212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~  289 (515)
T TIGR03140       212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQR  289 (515)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCE
Confidence            3459999999999999999999     55543  4555442    112211111122456666778888889999997 5


Q ss_pred             EEEecC--CeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCC----ccee---chhhHhcch-H------------
Q psy14927        864 GKITGP--NTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDE----ETIV---SSTGALSLK-K------------  921 (1074)
Q Consensus       864 v~~id~--~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~----~~v~---t~~~~~~~~-~------------  921 (1074)
                      |+.++.  +.+.+++++|  ..+.||+||||||++|.. |++++..    ..+.   .++...... +            
T Consensus       290 V~~I~~~~~~~~v~~~~g--~~i~~d~lIlAtGa~~~~-~~ipG~~~~~~~~v~~~~~~~~~~~~~k~VvViGgG~~g~E  366 (515)
T TIGR03140       290 AKKIETEDGLIVVTLESG--EVLKAKSVIVATGARWRK-LGVPGEKEYIGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIE  366 (515)
T ss_pred             EEEEEecCCeEEEEECCC--CEEEeCEEEECCCCCcCC-CCCCCHHHcCCCeEEEeeccChhhcCCCEEEEECCcHHHHH
Confidence            777754  3567777777  579999999999998742 2333321    1122   122211111 1            


Q ss_pred             -hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHh-CCCEEEeCceEEEEEecCCeE-EEEEeeccCCCCceEEE
Q psy14927        922 -GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGK-QGMQFKLGTKVTGASKSGDNI-TVTIENVKDPTKKEELS  998 (1074)
Q Consensus       922 -A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~-~gV~i~~~~~v~~i~~~~~~~-~v~~~~~~~~g~~~~i~  998 (1074)
                       |..|+..|.+||++++.+.+..       ...+.+.+++ .||++++++.++++.++++.+ .|++.+.. ++++++++
T Consensus       367 ~A~~L~~~g~~Vtli~~~~~l~~-------~~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~-~~~~~~i~  438 (515)
T TIGR03140       367 AAIDLAGIVRHVTVLEFADELKA-------DKVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRN-SGEEKQLD  438 (515)
T ss_pred             HHHHHHhcCcEEEEEEeCCcCCh-------hHHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECC-CCcEEEEE
Confidence             7888888999999998876651       2445667765 699999999999998764443 46666532 34557899


Q ss_pred             cCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCC-CcHHHHHHHHHHHHHHhhC
Q psy14927        999 CDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGP-MLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus       999 ~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~-~~~~~A~~~G~~aA~~I~~ 1072 (1074)
                      +|.||+++|++|+++++  ... ++++++|+|.||++++|++|||||+|||++.| .++..|+.+|..||.+|..
T Consensus       439 ~D~vi~a~G~~Pn~~~l--~~~-~~~~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~i~~  510 (515)
T TIGR03140       439 LDGVFVQIGLVPNTEWL--KDA-VELNRRGEIVIDERGRTSVPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAFD  510 (515)
T ss_pred             cCEEEEEeCCcCCchHH--hhh-cccCCCCeEEECCCCCCCCCCEEEcccccCCccceEEEEEccHHHHHHHHHH
Confidence            99999999999999984  444 78888899999999999999999999999865 4678899999999999864

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK10262 thioredoxin reductase; Provisional

Probab=99.93  E-value=3.7e-25  Score=251.60  Aligned_cols=266  Identities=18%  Similarity=0.216  Sum_probs=185.0

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchh----hhhhhhh-HHHhhhhhhHHHHhhhCCeEEEeee
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLE----TMMGTKS-AAVKALTGGIAHLFKSNKVTQLNGH  863 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~----~~~~~~~-~~~~~l~~~~~~~l~~~gV~~~~g~  863 (1074)
                      +++|+||||||||++||..+++     ++++.. ..|+.+...    .++.... .....+...+......++++++.++
T Consensus         6 ~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (321)
T PRK10262          6 HSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDH   84 (321)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEeeE
Confidence            4459999999999999999988     566643 445443221    1111100 0112344556677777788888887


Q ss_pred             EEEecC--CeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCC----cce---echhhHhcchH-------------
Q psy14927        864 GKITGP--NTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDE----ETI---VSSTGALSLKK-------------  921 (1074)
Q Consensus       864 v~~id~--~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~----~~v---~t~~~~~~~~~-------------  921 (1074)
                      ++.++.  ..++++.+++   .+.||+||||||+.|.. |++++..    ..+   ...+......+             
T Consensus        85 v~~v~~~~~~~~v~~~~~---~~~~d~vilAtG~~~~~-~~i~g~~~~~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~e  160 (321)
T PRK10262         85 INKVDLQNRPFRLTGDSG---EYTCDALIIATGASARY-LGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVE  160 (321)
T ss_pred             EEEEEecCCeEEEEecCC---EEEECEEEECCCCCCCC-CCCCCHHHcCCCcEEEeecCCHHHcCCCEEEEECCCHHHHH
Confidence            766654  3444544333   68999999999999742 2333321    111   12222221111             


Q ss_pred             -hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEc
Q psy14927        922 -GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSC  999 (1074)
Q Consensus       922 -A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~  999 (1074)
                       |..|++.|++||++++.+.+.   .++.+.+.+.+.|++.||++++++.++++.+++.+ ..|++.+...+++.+++++
T Consensus       161 ~A~~l~~~~~~Vtlv~~~~~~~---~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~  237 (321)
T PRK10262        161 EALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDV  237 (321)
T ss_pred             HHHHHHhhCCEEEEEEECCccC---CCHHHHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEEC
Confidence             788888999999999987653   34667888889999999999999999999876433 3455554210133468999


Q ss_pred             CEEEEccCCcccCCccCccccCcccCCCCCeeeCC-----CCCCCCCCEEEecccCCC-CCcHHHHHHHHHHHHHHhh
Q psy14927       1000 DALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNS-----RFQTVIPNIFAIGDCIHG-PMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1000 D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~-----~~~ts~~~IyAiGD~~~~-~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                      |.||+++|++||+.++  . .++.++ +|+|.||+     +++|++|||||+|||++. +.++..|+.+|..||..|.
T Consensus       238 D~vv~a~G~~p~~~l~--~-~~l~~~-~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa~~~~  311 (321)
T PRK10262        238 AGLFVAIGHSPNTAIF--E-GQLELE-NGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAE  311 (321)
T ss_pred             CEEEEEeCCccChhHh--h-cccccc-CCEEEECCCCcccccccCCCCEEECeeccCCCcceEEEEehhHHHHHHHHH
Confidence            9999999999999864  2 245554 58999997     678999999999999975 4567779999999999875

>KOG1336|consensus

Probab=99.93  E-value=4.6e-25  Score=245.20  Aligned_cols=262  Identities=22%  Similarity=0.288  Sum_probs=199.9

Q ss_pred             chhhhhhccccchHHHHHHHhh-------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEE
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGK  865 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~  865 (1074)
                      -++|+|+||||+|..|+.++..       +++.....+  ..+.+.++.........+.....++++..||+++++ .|+
T Consensus        74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~--pydr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~  151 (478)
T KOG1336|consen   74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLL--PYDRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVV  151 (478)
T ss_pred             cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccC--cccchhcccceeeccccccccChhhHhhcCceEEEcceeE
Confidence            4459999999999999999988       222211111  112222222222223445555667888999999999 599


Q ss_pred             EecCCeEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCCCCcceechhhHhcchH----------------------
Q psy14927        866 ITGPNTVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVDEETIVSSTGALSLKK----------------------  921 (1074)
Q Consensus       866 ~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~~~v~t~~~~~~~~~----------------------  921 (1074)
                      .+|-...+|++.+|  +.+.|++||||||+.|.  ++||..  ..++.+..++.+...                      
T Consensus       152 ~~D~~~K~l~~~~G--e~~kys~LilATGs~~~~l~~pG~~--~~nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~E  227 (478)
T KOG1336|consen  152 KADLASKTLVLGNG--ETLKYSKLIIATGSSAKTLDIPGVE--LKNVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGME  227 (478)
T ss_pred             EeeccccEEEeCCC--ceeecceEEEeecCccccCCCCCcc--ccceeeeccHHHHHHHHHHhccCceEEEECchHHHHH
Confidence            99999999999999  88999999999999764  556654  344443333333222                      


Q ss_pred             -hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe--EEEEEeeccCCCCceEEE
Q psy14927        922 -GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN--ITVTIENVKDPTKKEELS  998 (1074)
Q Consensus       922 -A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~~~~~g~~~~i~  998 (1074)
                       +..+...+.+||+|++.+.+++.-+.+.+.+.++..++++||++++++.+.+++...++  ..|.+.+      +.+++
T Consensus       228 vaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~d------g~~l~  301 (478)
T KOG1336|consen  228 VAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKD------GKTLE  301 (478)
T ss_pred             HHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEecc------CCEec
Confidence             55556668899999999999966789999999999999999999999999999987755  4455544      67999


Q ss_pred             cCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCC----------cHHHHHHHHHHHHH
Q psy14927        999 CDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPM----------LAHKAEDEGIVCVE 1068 (1074)
Q Consensus       999 ~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~----------~~~~A~~~G~~aA~ 1068 (1074)
                      +|.|++.+|.+|++.++  +. |..++..|+|.||+++||++|||||+||+++.|.          -+..|..+|+.++.
T Consensus       302 adlvv~GiG~~p~t~~~--~~-g~~~~~~G~i~V~~~f~t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~av~  378 (478)
T KOG1336|consen  302 ADLVVVGIGIKPNTSFL--EK-GILLDSKGGIKVDEFFQTSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQAVK  378 (478)
T ss_pred             cCeEEEeeccccccccc--cc-cceecccCCEeehhceeeccCCcccccceeecccccccccccchHHHHHHHHHHhhhh
Confidence            99999999999999984  44 8888999999999999999999999999998542          24567888886655


Q ss_pred             Hh
Q psy14927       1069 GI 1070 (1074)
Q Consensus      1069 ~I 1070 (1074)
                      .|
T Consensus       379 ai  380 (478)
T KOG1336|consen  379 AI  380 (478)
T ss_pred             hh
Confidence            54

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=99.92  E-value=9.1e-25  Score=263.24  Aligned_cols=263  Identities=21%  Similarity=0.293  Sum_probs=191.8

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccc----hhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-e
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLN----LETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-H  863 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~----~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~  863 (1074)
                      ..+|+||||||||++||.++++     ++++.  ..|+++.    +..++........++...+...++++|++++.+ +
T Consensus       211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~--~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~  288 (517)
T PRK15317        211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE--RFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQR  288 (517)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCE
Confidence            3459999999999999999999     45543  3555442    222222212223456677888888899999987 6


Q ss_pred             EEEecCC--eEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCC-CCccee---chhhHh-cchH-------------
Q psy14927        864 GKITGPN--TVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEV-DEETIV---SSTGAL-SLKK-------------  921 (1074)
Q Consensus       864 v~~id~~--~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~-~~~~v~---t~~~~~-~~~~-------------  921 (1074)
                      |+.++..  .+.|.+.+|  .++.||.||+|||++|+  .+||... ....+.   +++... ..+.             
T Consensus       289 V~~I~~~~~~~~V~~~~g--~~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~~~~~~~~~gk~VvVVGgG~~g~e~  366 (517)
T PRK15317        289 ASKLEPAAGLIEVELANG--AVLKAKTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEA  366 (517)
T ss_pred             EEEEEecCCeEEEEECCC--CEEEcCEEEECCCCCcCCCCCCCHHHhcCceEEEeeccCchhcCCCEEEEECCCHHHHHH
Confidence            8887653  567777777  57999999999999874  2343211 111121   222221 1111             


Q ss_pred             hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHh-CCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEc
Q psy14927        922 GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGK-QGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSC  999 (1074)
Q Consensus       922 A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~-~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~  999 (1074)
                      |..|+..|++||++++++.+. .      ...+.+.+.+ .||++++++.++++.++++. ..+++.+.. +++.+++++
T Consensus       367 A~~L~~~~~~Vtlv~~~~~l~-~------~~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~-~g~~~~i~~  438 (517)
T PRK15317        367 AIDLAGIVKHVTVLEFAPELK-A------DQVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRT-TGEEHHLEL  438 (517)
T ss_pred             HHHHHhcCCEEEEEEECcccc-c------cHHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECC-CCcEEEEEc
Confidence            888888999999999988765 1      2344556665 69999999999999886444 346666533 355578999


Q ss_pred             CEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCC-CcHHHHHHHHHHHHHHhh
Q psy14927       1000 DALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGP-MLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1000 D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~-~~~~~A~~~G~~aA~~I~ 1071 (1074)
                      |.|++++|++|+++++  ... ++++++|+|.||++++|++|||||+|||++.+ +++..|+.+|..||.++.
T Consensus       439 D~v~~~~G~~p~~~~l--~~~-v~~~~~g~i~vd~~l~Ts~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~~~~  508 (517)
T PRK15317        439 EGVFVQIGLVPNTEWL--KGT-VELNRRGEIIVDARGATSVPGVFAAGDCTTVPYKQIIIAMGEGAKAALSAF  508 (517)
T ss_pred             CEEEEeECCccCchHH--hhh-eeeCCCCcEEECcCCCCCCCCEEECccccCCCCCEEEEhhhhHHHHHHHHH
Confidence            9999999999999984  444 78888999999999999999999999999864 678999999999999876

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=99.92  E-value=1.1e-24  Score=273.41  Aligned_cols=261  Identities=22%  Similarity=0.180  Sum_probs=187.3

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEec
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITG  868 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id  868 (1074)
                      .++|+||||||||++||.+|++     ++|++.+..|+.+.+. ++.++  ....+.....+.+.+.||+|+.++.+.  
T Consensus       431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g-ip~~r--lp~~~~~~~~~~l~~~gv~~~~~~~v~--  505 (752)
T PRK12778        431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYG-IPEFR--LPKKIVDVEIENLKKLGVKFETDVIVG--  505 (752)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec-CCCCC--CCHHHHHHHHHHHHHCCCEEECCCEEC--
Confidence            5569999999999999999999     8999988888877653 22221  113344555677788899999986431  


Q ss_pred             CCeEEEEeCCCCeeEEEcCeEEEccCCC-CCCCCCCCC-CCcceechhhHhcc------------------hH-------
Q psy14927        869 PNTVTVIKSDGSTEEVKTKNILIATGSE-VTPFPGIEV-DEETIVSSTGALSL------------------KK-------  921 (1074)
Q Consensus       869 ~~~~~v~~~~G~~~~i~~d~lIIATG~~-p~~ipgi~~-~~~~v~t~~~~~~~------------------~~-------  921 (1074)
                         ..+++++.  ....||+||||||+. |+. +++++ +...+++..+++..                  +.       
T Consensus       506 ---~~v~~~~l--~~~~ydavvlAtGa~~~~~-l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG  579 (752)
T PRK12778        506 ---KTITIEEL--EEEGFKGIFIASGAGLPNF-MNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGG  579 (752)
T ss_pred             ---CcCCHHHH--hhcCCCEEEEeCCCCCCCC-CCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCc
Confidence               12333332  346799999999994 532 22333 23456666655421                  11       


Q ss_pred             ------hhHHhhcCCc-EEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe--EEEEEeec----
Q psy14927        922 ------GSVWGRLGAE-VTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN--ITVTIENV----  988 (1074)
Q Consensus       922 ------A~~l~~~G~~-Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~~----  988 (1074)
                            |..+.++|.+ ||++++++...++....++     +.+++.||++++++.+.++..++++  ..|++...    
T Consensus       580 ~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~-----~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~  654 (752)
T PRK12778        580 NTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEV-----KHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGE  654 (752)
T ss_pred             HHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHH-----HHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecC
Confidence                  7788889987 9999987653323332222     4567889999999999999764433  23443210    


Q ss_pred             ---c-------CCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcHHH
Q psy14927        989 ---K-------DPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHK 1058 (1074)
Q Consensus       989 ---~-------~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~~~ 1058 (1074)
                         +       .+|+..++++|.||+|+|++|++.++ ....|++++++|+|.||++++|+.|||||+|||++++.++..
T Consensus       655 ~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~-~~~~gl~~~~~G~i~vd~~~~Ts~~gVfA~GD~~~g~~~vv~  733 (752)
T PRK12778        655 PDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVP-SSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDIVRGGATVIL  733 (752)
T ss_pred             cCCCCCCCceecCCCeEEEECCEEEECcCCCCCcccc-ccccCceECCCCCEEeCCCCCCCCCCEEEeCCccCCcHHHHH
Confidence               0       01344679999999999999998763 223478899999999999999999999999999998888999


Q ss_pred             HHHHHHHHHHHhh
Q psy14927       1059 AEDEGIVCVEGIA 1071 (1074)
Q Consensus      1059 A~~~G~~aA~~I~ 1071 (1074)
                      |+.+|+.||.+|.
T Consensus       734 Av~~G~~AA~~I~  746 (752)
T PRK12778        734 AMGDGKRAAAAID  746 (752)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999985

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=99.92  E-value=1.8e-24  Score=272.65  Aligned_cols=261  Identities=16%  Similarity=0.137  Sum_probs=190.6

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEec
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITG  868 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id  868 (1074)
                      .++|+|||||||||+||.+|++     ++||+.+..||.+.+. ++.++  ...++.....+.+...||+|+.|+...  
T Consensus       306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yG-IP~~r--lp~~vi~~~i~~l~~~Gv~f~~n~~vG--  380 (944)
T PRK12779        306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYG-IPEFR--LPNQLIDDVVEKIKLLGGRFVKNFVVG--  380 (944)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEcc-CCCCc--ChHHHHHHHHHHHHhhcCeEEEeEEec--
Confidence            4559999999999999999999     8999999999988765 33332  235666667788888999999996442  


Q ss_pred             CCeEEEEeCCCCeeEEEcCeEEEccCCC-CCCCCCCCC-CCcceechhhHhcc--------------------hH-----
Q psy14927        869 PNTVTVIKSDGSTEEVKTKNILIATGSE-VTPFPGIEV-DEETIVSSTGALSL--------------------KK-----  921 (1074)
Q Consensus       869 ~~~~~v~~~~G~~~~i~~d~lIIATG~~-p~~ipgi~~-~~~~v~t~~~~~~~--------------------~~-----  921 (1074)
                         ..+++++.  ....||+||||||+. |+. +++++ +..++++..+++..                    +.     
T Consensus       381 ---~dit~~~l--~~~~yDAV~LAtGA~~pr~-l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIG  454 (944)
T PRK12779        381 ---KTATLEDL--KAAGFWKIFVGTGAGLPTF-MNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIG  454 (944)
T ss_pred             ---cEEeHHHh--ccccCCEEEEeCCCCCCCc-CCCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEEC
Confidence               23444444  345799999999996 532 23333 23456666655421                    11     


Q ss_pred             --------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCC--eE-EEEEe----
Q psy14927        922 --------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGD--NI-TVTIE----  986 (1074)
Q Consensus       922 --------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~--~~-~v~~~----  986 (1074)
                              |..+.++|.+||++++++...+|....+    +.. ..+.||++++++.+++|.++++  .+ .+.+.    
T Consensus       455 GG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~~e----~~~-a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l  529 (944)
T PRK12779        455 GGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARVEE----LHH-ALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNEL  529 (944)
T ss_pred             CCHHHHHHHHHHHHcCCEEEEEEecCcccccccHHH----HHH-HHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEe
Confidence                    7788889999999998864332333222    222 3467999999999999986532  22 22221    


Q ss_pred             -e--cc------CCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCC-CCCCCCCCEEEecccCCCCCcH
Q psy14927        987 -N--VK------DPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNS-RFQTVIPNIFAIGDCIHGPMLA 1056 (1074)
Q Consensus       987 -~--~~------~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~-~~~ts~~~IyAiGD~~~~~~~~ 1056 (1074)
                       .  .+      .+|+..++++|.||+|+|+.|++.+. ....|++++++|.|.||+ +++||.|||||+|||+.++.++
T Consensus       530 ~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~-~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~~~v  608 (944)
T PRK12779        530 GEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMK-DAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGGSTA  608 (944)
T ss_pred             ccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhh-hcccCceECCCCCEEECCCCCccCCCCEEEEEcCCCChHHH
Confidence             0  00      02445689999999999999997642 345688899999999996 5899999999999999998899


Q ss_pred             HHHHHHHHHHHHHhh
Q psy14927       1057 HKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1057 ~~A~~~G~~aA~~I~ 1071 (1074)
                      ..|+.+|+.||.+|.
T Consensus       609 v~Ai~eGr~AA~~I~  623 (944)
T PRK12779        609 IRAAGDGQAAAKEIV  623 (944)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999999986

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=99.92  E-value=3e-24  Score=255.44  Aligned_cols=259  Identities=18%  Similarity=0.155  Sum_probs=186.4

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEec
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITG  868 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id  868 (1074)
                      .++|+||||||+|+++|..|++     +++++.+..|+.+.+. ++...  ...++.....+.+...||+|+.++.+.  
T Consensus       140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~g-ip~~~--~~~~~~~~~~~~l~~~gv~~~~~~~v~--  214 (457)
T PRK11749        140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYG-IPEFR--LPKDIVDREVERLLKLGVEIRTNTEVG--  214 (457)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeecc-CCCcc--CCHHHHHHHHHHHHHcCCEEEeCCEEC--
Confidence            4569999999999999999998     7899888887766542 22211  123455556677888899999996541  


Q ss_pred             CCeEEEEeCCCCeeEEEcCeEEEccCCC-CC--CCCCCCCCCcceechhhHhcc-------------hH-----------
Q psy14927        869 PNTVTVIKSDGSTEEVKTKNILIATGSE-VT--PFPGIEVDEETIVSSTGALSL-------------KK-----------  921 (1074)
Q Consensus       869 ~~~~~v~~~~G~~~~i~~d~lIIATG~~-p~--~ipgi~~~~~~v~t~~~~~~~-------------~~-----------  921 (1074)
                         ..++++++   .+.||+||||||+. |.  ++||..  ...+++..+++..             +.           
T Consensus       215 ---~~v~~~~~---~~~~d~vvlAtGa~~~~~~~i~G~~--~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~  286 (457)
T PRK11749        215 ---RDITLDEL---RAGYDAVFIGTGAGLPRFLGIPGEN--LGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAM  286 (457)
T ss_pred             ---CccCHHHH---HhhCCEEEEccCCCCCCCCCCCCcc--CCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHH
Confidence               12222332   37899999999996 43  334432  2345544333221             11           


Q ss_pred             --hhHHhhcCC-cEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeec-------c-
Q psy14927        922 --GSVWGRLGA-EVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENV-------K-  989 (1074)
Q Consensus       922 --A~~l~~~G~-~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~-------~-  989 (1074)
                        |..+.+.|. +||++++++...++....     ..+.+++.||++++++.+.++.+++++ ..|++...       + 
T Consensus       287 e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~-----~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g  361 (457)
T PRK11749        287 DAARTAKRLGAESVTIVYRRGREEMPASEE-----EVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASG  361 (457)
T ss_pred             HHHHHHHHcCCCeEEEeeecCcccCCCCHH-----HHHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCC
Confidence              777888887 899999876533233322     246678899999999999999876543 22333211       0 


Q ss_pred             -----CCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCC-CCCCCCCCEEEecccCCCCCcHHHHHHHH
Q psy14927        990 -----DPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNS-RFQTVIPNIFAIGDCIHGPMLAHKAEDEG 1063 (1074)
Q Consensus       990 -----~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~-~~~ts~~~IyAiGD~~~~~~~~~~A~~~G 1063 (1074)
                           .++++.++++|.||+++|++|++.++ ....++.++++|+|.||+ +++|++|+|||+|||+.+++++..|+.+|
T Consensus       362 ~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~-~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~~~~~~~A~~~G  440 (457)
T PRK11749        362 RRRVPIEGSEFTLPADLVIKAIGQTPNPLIL-STTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVTGAATVVWAVGDG  440 (457)
T ss_pred             CcccCCCCceEEEECCEEEECccCCCCchhh-ccccCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCCchHHHHHHHHH
Confidence                 02345689999999999999998763 345678889999999998 88999999999999998878899999999


Q ss_pred             HHHHHHhh
Q psy14927       1064 IVCVEGIA 1071 (1074)
Q Consensus      1064 ~~aA~~I~ 1071 (1074)
                      +.||.+|.
T Consensus       441 ~~aA~~I~  448 (457)
T PRK11749        441 KDAAEAIH  448 (457)
T ss_pred             HHHHHHHH
Confidence            99999986

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=99.92  E-value=3.5e-24  Score=263.62  Aligned_cols=260  Identities=18%  Similarity=0.191  Sum_probs=187.0

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEec
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITG  868 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id  868 (1074)
                      .++|+||||||+|+++|..|++     ++|++.+..||.+.+. ++.+.  ....+.....+.+...||+++.+++..++
T Consensus       193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~g-ip~~~--~~~~~~~~~~~~l~~~Gv~i~~~~~v~~d  269 (652)
T PRK12814        193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYG-IPRFR--LPESVIDADIAPLRAMGAEFRFNTVFGRD  269 (652)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeec-CCCCC--CCHHHHHHHHHHHHHcCCEEEeCCcccCc
Confidence            5569999999999999999999     8999988888877653 22221  22444555667778889999999654322


Q ss_pred             CCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCC-CCcceechhhHhcc---------hH--------------hhH
Q psy14927        869 PNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEV-DEETIVSSTGALSL---------KK--------------GSV  924 (1074)
Q Consensus       869 ~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~-~~~~v~t~~~~~~~---------~~--------------A~~  924 (1074)
                           +++.+.   ...||+||||||+++...+++++ +...+++..+++..         .+              |..
T Consensus       270 -----v~~~~~---~~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~  341 (652)
T PRK12814        270 -----ITLEEL---QKEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAART  341 (652)
T ss_pred             -----cCHHHH---HhhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHH
Confidence                 222222   23599999999998632223332 23345655554431         01              777


Q ss_pred             HhhcCC-cEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEE---Eeec----c-------
Q psy14927        925 WGRLGA-EVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVT---IENV----K-------  989 (1074)
Q Consensus       925 l~~~G~-~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~---~~~~----~-------  989 (1074)
                      +.++|. +||++++++...++..+.++    .+. .+.||+|++++.+.+|.++++++.++   +...    +       
T Consensus       342 l~~~Ga~~Vtlv~r~~~~~mpa~~~ei----~~a-~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~  416 (652)
T PRK12814        342 ALRLGAESVTILYRRTREEMPANRAEI----EEA-LAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVP  416 (652)
T ss_pred             HHHcCCCeEEEeeecCcccCCCCHHHH----HHH-HHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCccee
Confidence            778886 69999988753324444333    222 35799999999999998765554332   2210    0       


Q ss_pred             CCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCC-CCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHH
Q psy14927        990 DPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNS-RFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVE 1068 (1074)
Q Consensus       990 ~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~-~~~ts~~~IyAiGD~~~~~~~~~~A~~~G~~aA~ 1068 (1074)
                      .+|+..++++|.||+++|+.|++++  +...|++++.+|+|.||+ +++|+.|||||+||++.++.++..|+.+|+.||.
T Consensus       417 ~~g~~~~i~~D~VI~AiG~~p~~~l--l~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g~~~v~~Ai~~G~~AA~  494 (652)
T PRK12814        417 VEGSEFTLQADTVISAIGQQVDPPI--AEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTGADIAINAVEQGKRAAH  494 (652)
T ss_pred             cCCceEEEECCEEEECCCCcCCccc--ccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcCCCchHHHHHHHHHHHHHH
Confidence            0133457999999999999999987  567889999899999996 6889999999999999988889999999999999


Q ss_pred             Hhh
Q psy14927       1069 GIA 1071 (1074)
Q Consensus      1069 ~I~ 1071 (1074)
                      +|.
T Consensus       495 ~I~  497 (652)
T PRK12814        495 AID  497 (652)
T ss_pred             HHH
Confidence            985

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=99.92  E-value=3.7e-24  Score=259.44  Aligned_cols=263  Identities=19%  Similarity=0.222  Sum_probs=182.4

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccccccccchh----hhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEE
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLE----TMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGK  865 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~----~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~  865 (1074)
                      .+|+||||||||++||+++++     +++|+. ..||.+...    .++.........+...+...+...|++++.++|+
T Consensus         5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~~~~V~   83 (555)
T TIGR03143         5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFLQAEVL   83 (555)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEeccEEE
Confidence            359999999999999999998     788875 455554321    1111111112345566777788889999888888


Q ss_pred             EecCCe--EEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCC-CCccee---chhh-HhcchH-------------hh
Q psy14927        866 ITGPNT--VTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEV-DEETIV---SSTG-ALSLKK-------------GS  923 (1074)
Q Consensus       866 ~id~~~--~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~-~~~~v~---t~~~-~~~~~~-------------A~  923 (1074)
                      .++...  +.+.+.+|   ++.+++||||||++|.  ++||... ....+.   +++. ......             |.
T Consensus        84 ~i~~~~~~~~V~~~~g---~~~a~~lVlATGa~p~~~~ipG~~~~~~~~v~~~~~~~~~~~~g~~VvVIGgG~~g~E~A~  160 (555)
T TIGR03143        84 DVDFDGDIKTIKTARG---DYKTLAVLIATGASPRKLGFPGEEEFTGRGVAYCATCDGEFFTGMDVFVIGGGFAAAEEAV  160 (555)
T ss_pred             EEEecCCEEEEEecCC---EEEEeEEEECCCCccCCCCCCCHHHhCCceEEEEeecChhhcCCCEEEEECCCHHHHHHHH
Confidence            887543  45666555   5899999999999984  3444311 011121   2221 111111             77


Q ss_pred             HHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEE--EcCE
Q psy14927        924 VWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEEL--SCDA 1001 (1074)
Q Consensus       924 ~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i--~~D~ 1001 (1074)
                      .|.+.|++||++++.+.+.   ..+..   ..+.+...||++++++.|+++.+++....+.+.+.. +|+..++  ++|.
T Consensus       161 ~L~~~g~~Vtli~~~~~~~---~~~~~---~~~~~~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~-~G~~~~~~~~~D~  233 (555)
T TIGR03143       161 FLTRYASKVTVIVREPDFT---CAKLI---AEKVKNHPKIEVKFNTELKEATGDDGLRYAKFVNNV-TGEITEYKAPKDA  233 (555)
T ss_pred             HHHccCCEEEEEEeCCccc---cCHHH---HHHHHhCCCcEEEeCCEEEEEEcCCcEEEEEEEECC-CCCEEEEeccccc
Confidence            7888999999999988664   12222   223345579999999999999875433334444322 3444443  4776


Q ss_pred             ----EEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCC-CCCcHHHHHHHHHHHHHHhh
Q psy14927       1002 ----LLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIH-GPMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1002 ----vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~-~~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                          ||+++|++|++.++  . .+++++++|+|.||++++|++|||||+|||+. .+..+..|+.+|+.||.+|.
T Consensus       234 ~~~~Vi~a~G~~Pn~~l~--~-~~l~l~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i~  305 (555)
T TIGR03143       234 GTFGVFVFVGYAPSSELF--K-GVVELDKRGYIPTNEDMETNVPGVYAAGDLRPKELRQVVTAVADGAIAATSAE  305 (555)
T ss_pred             cceEEEEEeCCCCChhHH--h-hhcccCCCCeEEeCCccccCCCCEEEceeccCCCcchheeHHhhHHHHHHHHH
Confidence                99999999999973  3 35788889999999999999999999999975 34567889999999999985

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=99.91  E-value=3.7e-24  Score=247.62  Aligned_cols=265  Identities=19%  Similarity=0.266  Sum_probs=214.2

Q ss_pred             hhhhhhccccchHHHHHHHhh--------hhhhhcccccc-ccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eE
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT--------KLFTQAGDKGV-KLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HG  864 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~--------~l~e~~~~~g~-~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v  864 (1074)
                      .++||||.|++|..+.-++..        |+|...++... .+.+..+.+.... .+++...-.+++.++||+++.| .|
T Consensus         4 ~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~-~edi~l~~~dwy~~~~i~L~~~~~v   82 (793)
T COG1251           4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKT-AEDISLNRNDWYEENGITLYTGEKV   82 (793)
T ss_pred             eeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCcc-HHHHhccchhhHHHcCcEEEcCCee
Confidence            348999999999988888777        55555543322 3334444444333 3666666778899999999999 69


Q ss_pred             EEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCC-CCccee---chhhHhcchH-------------------
Q psy14927        865 KITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEV-DEETIV---SSTGALSLKK-------------------  921 (1074)
Q Consensus       865 ~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~-~~~~v~---t~~~~~~~~~-------------------  921 (1074)
                      +++|+....|+++.|  .++.||.|||||||.|..+| +|+ +...++   +.++......                   
T Consensus        83 ~~idr~~k~V~t~~g--~~~~YDkLilATGS~pfi~P-iPG~~~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlE  159 (793)
T COG1251          83 IQIDRANKVVTTDAG--RTVSYDKLIIATGSYPFILP-IPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLE  159 (793)
T ss_pred             EEeccCcceEEccCC--cEeecceeEEecCccccccC-CCCCCCCCeeEEecHHHHHHHHHHHhccCCcEEEccchhhhH
Confidence            999999999999999  88999999999999996444 332 223344   4444433322                   


Q ss_pred             -hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcC
Q psy14927        922 -GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCD 1000 (1074)
Q Consensus       922 -A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D 1000 (1074)
                       |..|...|.+|++++..+.++-..+++.-...+...+++.||+++++....++.+.+....+.+.+      +..+++|
T Consensus       160 aA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~D------G~~i~ad  233 (793)
T COG1251         160 AARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFAD------GTEIPAD  233 (793)
T ss_pred             HHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhcCcceeeEeecC------CCcccce
Confidence             778888999999999999998788999999999999999999999999999888855556777777      5689999


Q ss_pred             EEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCC----CCcHHHHHHHHHHHHHHhhCC
Q psy14927       1001 ALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHG----PMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1001 ~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~----~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      .|++++|.+||+++  ...+|+.+++  .|.||+++|||.|+|||+|+|+..    ..++.-+..|++++|+++++.
T Consensus       234 ~VV~a~GIrPn~el--a~~aGlavnr--GIvvnd~mqTsdpdIYAvGEcae~~g~~yGLVaP~yeq~~v~a~hl~~~  306 (793)
T COG1251         234 LVVMAVGIRPNDEL--AKEAGLAVNR--GIVVNDYMQTSDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADHLCGG  306 (793)
T ss_pred             eEEEecccccccHh--HHhcCcCcCC--CeeecccccccCCCeeehhhHHHhcCccceehhHHHHHHHHHHHHhccC
Confidence            99999999999998  7889999987  599999999999999999999863    446788999999999999874

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=99.91  E-value=1.4e-23  Score=249.02  Aligned_cols=259  Identities=21%  Similarity=0.206  Sum_probs=184.1

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEec
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITG  868 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id  868 (1074)
                      .++|+||||||+|+++|..|++     ++|++.+..||.+.+. ++.+..  ..++.....+.+...||+++.++...  
T Consensus       141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~g-ip~~~~--~~~~~~~~~~~~~~~Gv~~~~~~~v~--  215 (467)
T TIGR01318       141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFG-IPSFKL--DKAVLSRRREIFTAMGIEFHLNCEVG--  215 (467)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeec-CccccC--CHHHHHHHHHHHHHCCCEEECCCEeC--
Confidence            5569999999999999999998     7899998888877653 333221  24455556678888999999985321  


Q ss_pred             CCeEEEEeCCCCeeEEEcCeEEEccCCCCC---CCCCCCCCCcceechhhHh---------------------cchH---
Q psy14927        869 PNTVTVIKSDGSTEEVKTKNILIATGSEVT---PFPGIEVDEETIVSSTGAL---------------------SLKK---  921 (1074)
Q Consensus       869 ~~~~~v~~~~G~~~~i~~d~lIIATG~~p~---~ipgi~~~~~~v~t~~~~~---------------------~~~~---  921 (1074)
                      .   .+.+++   ....||.||+|||+.+.   ++||...  ..+++..+++                     ..++   
T Consensus       216 ~---~~~~~~---~~~~~D~vilAtGa~~~~~~~i~g~~~--~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvV  287 (467)
T TIGR01318       216 R---DISLDD---LLEDYDAVFLGVGTYRSMRGGLPGEDA--PGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVV  287 (467)
T ss_pred             C---ccCHHH---HHhcCCEEEEEeCCCCCCcCCCCCcCC--CCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEE
Confidence            1   111111   12469999999999863   4555432  2344322111                     0011   


Q ss_pred             ----------hhHHhhcCC-cEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe--EEEEEeec
Q psy14927        922 ----------GSVWGRLGA-EVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN--ITVTIENV  988 (1074)
Q Consensus       922 ----------A~~l~~~G~-~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~~  988 (1074)
                                |..+.++|. +||++++++...++..+.++     +.+.+.||++++++.+.++..++++  ..|++...
T Consensus       288 IGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~~e~-----~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~  362 (467)
T TIGR01318       288 LGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSRREV-----ANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRT  362 (467)
T ss_pred             ECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCCHHHH-----HHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEE
Confidence                      566677885 79999998765434444333     4567889999999999999764332  22333210


Q ss_pred             -------c-------CCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeC----CCCCCCCCCEEEecccC
Q psy14927        989 -------K-------DPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVN----SRFQTVIPNIFAIGDCI 1050 (1074)
Q Consensus       989 -------~-------~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd----~~~~ts~~~IyAiGD~~ 1050 (1074)
                             +       .+|+..++++|.||+++|++|+...+ +...+++++++|+|.||    .+++|+.|+||++|||+
T Consensus       363 ~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~-~~~~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~  441 (467)
T TIGR01318       363 ALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPW-LAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAV  441 (467)
T ss_pred             EecccCCCCCccceecCCceEEEECCEEEECCcCCCCcccc-ccccCccCCCCCCEEeCCccccCccCCCCCEEEECCcC
Confidence                   0       01345689999999999999986432 56778899999999999    67899999999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHhh
Q psy14927       1051 HGPMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1051 ~~~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                      +++.++..|+.+|+.||.+|.
T Consensus       442 ~~~~~~~~Ai~~G~~aA~~i~  462 (467)
T TIGR01318       442 RGADLVVTAVAEGRQAAQGIL  462 (467)
T ss_pred             CCccHHHHHHHHHHHHHHHHH
Confidence            988888999999999999986

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=99.91  E-value=1.9e-23  Score=240.17  Aligned_cols=267  Identities=21%  Similarity=0.168  Sum_probs=180.7

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEec
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITG  868 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id  868 (1074)
                      .++|+||||||+|+++|..+++     +++++.+..++.+... .+.... ..+.+. ...+.+.+.||+++.++....+
T Consensus        18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~-~~~~~~-~~~~~~-~~~~~l~~~~i~~~~~~~v~~~   94 (352)
T PRK12770         18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFG-IPEFRI-PIERVR-EGVKELEEAGVVFHTRTKVCCG   94 (352)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeec-Cccccc-CHHHHH-HHHHHHHhCCeEEecCcEEeec
Confidence            3459999999999999999998     7899888877765332 111110 112222 2334455669999999544322


Q ss_pred             CC-------eEEEEeCCCCeeEEEcCeEEEccCCC-CC--CCCCCCCCCcceechhhHh--------------c-----c
Q psy14927        869 PN-------TVTVIKSDGSTEEVKTKNILIATGSE-VT--PFPGIEVDEETIVSSTGAL--------------S-----L  919 (1074)
Q Consensus       869 ~~-------~~~v~~~~G~~~~i~~d~lIIATG~~-p~--~ipgi~~~~~~v~t~~~~~--------------~-----~  919 (1074)
                      ..       .+.......+...+.||+||||||+. |.  ++||.  +...+++..+..              .     .
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~~~~~~~ipg~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~g  172 (352)
T PRK12770         95 EPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTWKSRKLGIPGE--DLPGVYSALEYLFRIRAAKLGYLPWEKVPPVEG  172 (352)
T ss_pred             cccccccccccccccCCHHHHHhhCCEEEEEeCCCCCCcCCCCCc--cccCceeHHHHHHHhhhccccccccccccccCC
Confidence            11       11111111111247899999999995 42  34443  223344432211              0     0


Q ss_pred             hH-------------hhHHhhcCCc-EEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEE
Q psy14927        920 KK-------------GSVWGRLGAE-VTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTI  985 (1074)
Q Consensus       920 ~~-------------A~~l~~~G~~-Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~  985 (1074)
                      ..             |..+...|.+ ||++++.+... ....    ....+.|+++||++++++.+.++++++....|++
T Consensus       173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~-~~~~----~~~~~~l~~~gi~i~~~~~v~~i~~~~~~~~v~~  247 (352)
T PRK12770        173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINE-APAG----KYEIERLIARGVEFLELVTPVRIIGEGRVEGVEL  247 (352)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhh-CCCC----HHHHHHHHHcCCEEeeccCceeeecCCcEeEEEE
Confidence            11             7777778987 99998876432 1111    2344668999999999999999987543334444


Q ss_pred             eecc--------------CCCCceEEEcCEEEEccCCcccCCccCccc-cCcccCCCCCeeeCCCCCCCCCCEEEecccC
Q psy14927        986 ENVK--------------DPTKKEELSCDALLVCVGRRPYTHNLGLEE-IGIEKDEKGRVPVNSRFQTVIPNIFAIGDCI 1050 (1074)
Q Consensus       986 ~~~~--------------~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~-~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~ 1050 (1074)
                      .+..              .++++.++++|.||+++|++|++.+  ... .|+.++++|+|.||++++|+.|+||++|||+
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l--~~~~~g~~~~~~g~i~vd~~~~t~~~~vyaiGD~~  325 (352)
T PRK12770        248 AKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPF--AKECLGIELNRKGEIVVDEKHMTSREGVFAAGDVV  325 (352)
T ss_pred             EEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchh--hhcccCceecCCCcEeeCCCcccCCCCEEEEcccc
Confidence            3210              0245678999999999999999876  334 7888888999999999999999999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHhhC
Q psy14927       1051 HGPMLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus      1051 ~~~~~~~~A~~~G~~aA~~I~~ 1072 (1074)
                      .+|..+..|+.+|+.||.+|..
T Consensus       326 ~~~~~~~~A~~~g~~aa~~i~~  347 (352)
T PRK12770        326 TGPSKIGKAIKSGLRAAQSIHE  347 (352)
T ss_pred             cCcchHHHHHHHHHHHHHHHHH
Confidence            9888999999999999999863

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=99.90  E-value=2.5e-23  Score=264.77  Aligned_cols=261  Identities=17%  Similarity=0.163  Sum_probs=185.8

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEec
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITG  868 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id  868 (1074)
                      .++|+|||||||||+||.+|++     ++|++.+..|+.+.+. ++.+.  ...++.....+.+.+.||+|+.|+++..+
T Consensus       430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~g-ip~~r--l~~e~~~~~~~~l~~~Gv~~~~~~~vg~~  506 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYG-IPSFR--LPRDIIDREVQRLVDIGVKIETNKVIGKT  506 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeecc-CCccC--CCHHHHHHHHHHHHHCCCEEEeCCccCCc
Confidence            4569999999999999999999     8999988888877653 33332  12456666778888899999999654221


Q ss_pred             CCeEEEEeCCCCeeEEEcCeEEEccCCC-CC--CCCCCCCCCcceechhhHhcc------------------hH------
Q psy14927        869 PNTVTVIKSDGSTEEVKTKNILIATGSE-VT--PFPGIEVDEETIVSSTGALSL------------------KK------  921 (1074)
Q Consensus       869 ~~~~~v~~~~G~~~~i~~d~lIIATG~~-p~--~ipgi~~~~~~v~t~~~~~~~------------------~~------  921 (1074)
                         +++  ++- .....||+||||||+. |+  ++||.  +...+++..+++..                  .+      
T Consensus       507 ---~~~--~~l-~~~~~yDaViIATGa~~pr~l~IpG~--~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIG  578 (1006)
T PRK12775        507 ---FTV--PQL-MNDKGFDAVFLGVGAGAPTFLGIPGE--FAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIG  578 (1006)
T ss_pred             ---cCH--HHH-hhccCCCEEEEecCCCCCCCCCCCCc--CCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEEC
Confidence               211  110 0024699999999995 43  34443  23456666655421                  11      


Q ss_pred             --------hhHHhhcCC-cEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe--EEEEEeec--
Q psy14927        922 --------GSVWGRLGA-EVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN--ITVTIENV--  988 (1074)
Q Consensus       922 --------A~~l~~~G~-~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~~--  988 (1074)
                              |..+.++|. .|+++.++....++....+     .+.+++.||++++++.+.++..++++  ..|++...  
T Consensus       579 gG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~~e-----~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l  653 (1006)
T PRK12775        579 AGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARIEE-----IRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMEL  653 (1006)
T ss_pred             CcHHHHHHHHHHHHcCCCEEEEEeecCcccCCCCHHH-----HHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEe
Confidence                    667778887 5888887755443332222     24567889999999999999754332  23433210  


Q ss_pred             ---cC--------CCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCC-----CCCCCCCCEEEecccCCC
Q psy14927        989 ---KD--------PTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNS-----RFQTVIPNIFAIGDCIHG 1052 (1074)
Q Consensus       989 ---~~--------~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~-----~~~ts~~~IyAiGD~~~~ 1052 (1074)
                         +.        +|+..++++|.||+++|+.|++.++ ....|+.++.+|.|.||+     +++||+|||||+||++.+
T Consensus       654 ~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~-~~~~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~G  732 (1006)
T PRK12775        654 GEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIIT-QSTPGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIVTG  732 (1006)
T ss_pred             cccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhh-hccCCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcCCC
Confidence               00        2334579999999999999998763 233478888899999996     789999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHHhh
Q psy14927       1053 PMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1053 ~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                      +.++..|+.+|+.||.+|.
T Consensus       733 ~~~vv~Ai~~Gr~AA~~I~  751 (1006)
T PRK12775        733 GATVILAMGAGRRAARSIA  751 (1006)
T ss_pred             ccHHHHHHHHHHHHHHHHH
Confidence            9899999999999999985

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=99.90  E-value=4.5e-23  Score=243.85  Aligned_cols=253  Identities=19%  Similarity=0.281  Sum_probs=183.0

Q ss_pred             HHHHHhh-------hhhhhcccccccc-chhhhhhhhhHHHhhhhhh-HHHHhhhCCeEEEee-eEEEecCCeEEEEeCC
Q psy14927        809 ANYHLAT-------KLFTQAGDKGVKL-NLETMMGTKSAAVKALTGG-IAHLFKSNKVTQLNG-HGKITGPNTVTVIKSD  878 (1074)
Q Consensus       809 aA~~la~-------~l~e~~~~~g~~~-~~~~~~~~~~~~~~~l~~~-~~~~l~~~gV~~~~g-~v~~id~~~~~v~~~~  878 (1074)
                      ||.+|++       +++++.+.....+ .++.+..+.....+.+... ....+.+.||+++.+ +|+.+|+....+.+.+
T Consensus         2 aA~~l~~~~~~~~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~   81 (427)
T TIGR03385         2 AASRVRRLDKESDIIVFEKTEDVSFANCGLPYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEVNDERQTVVVRN   81 (427)
T ss_pred             HHHHHHhhCCCCcEEEEEcCCceeEEcCCCCeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEEECCCCEEEEEE
Confidence            5666665       6777777554433 2333322211111222222 344557889999866 7888987655555532


Q ss_pred             C-CeeEEE--cCeEEEccCCCCC--CCCCCCCCCcceechh---hHhcc---------hH-------------hhHHhhc
Q psy14927        879 G-STEEVK--TKNILIATGSEVT--PFPGIEVDEETIVSST---GALSL---------KK-------------GSVWGRL  928 (1074)
Q Consensus       879 G-~~~~i~--~d~lIIATG~~p~--~ipgi~~~~~~v~t~~---~~~~~---------~~-------------A~~l~~~  928 (1074)
                      + ...++.  ||+||||||++|.  ++||++.  ..+++..   +...+         +.             |..|++.
T Consensus        82 ~~~~~~~~~~yd~lIiATG~~p~~~~i~G~~~--~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~  159 (427)
T TIGR03385        82 NKTNETYEESYDYLILSPGASPIVPNIEGINL--DIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRER  159 (427)
T ss_pred             CCCCCEEecCCCEEEECCCCCCCCCCCCCcCC--CCEEEECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhC
Confidence            1 124567  9999999999984  3444321  3343322   22110         11             7788889


Q ss_pred             CCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927        929 GAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus       929 G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
                      |.+||++++++.++.+.+++++...+.+.|++.||++++++.+.++.+++. + +.+.+      +.++++|.||+++|+
T Consensus       160 g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~-~-v~~~~------g~~i~~D~vi~a~G~  231 (427)
T TIGR03385       160 GKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEER-V-KVFTS------GGVYQADMVILATGI  231 (427)
T ss_pred             CCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecCCC-E-EEEcC------CCEEEeCEEEECCCc
Confidence            999999999998854678899999999999999999999999999987543 2 33333      357999999999999


Q ss_pred             cccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCC----------CCcHHHHHHHHHHHHHHhhCC
Q psy14927       1009 RPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHG----------PMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1009 ~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~----------~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      +|++++  +..+|++++++|+|.||++++|+.|+|||+|||+..          ++++..|..||+++|+||+|.
T Consensus       232 ~p~~~~--l~~~gl~~~~~G~i~vd~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g~  304 (427)
T TIGR03385       232 KPNSEL--AKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAGN  304 (427)
T ss_pred             cCCHHH--HHhcCcccCCCCCEEECCCcEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhcCC
Confidence            999987  678899999999999999999999999999999863          347899999999999999874

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.90  E-value=6.3e-23  Score=253.78  Aligned_cols=259  Identities=19%  Similarity=0.202  Sum_probs=182.2

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEec
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITG  868 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id  868 (1074)
                      .++|+||||||||+++|..|++     ++||+.+..||.+.+. ++.+.  ...++.....+.+...||+|+.++.+..+
T Consensus       327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~g-ip~~~--l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~  403 (654)
T PRK12769        327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFG-IPAFK--LDKSLLARRREIFSAMGIEFELNCEVGKD  403 (654)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeec-CCCcc--CCHHHHHHHHHHHHHCCeEEECCCEeCCc
Confidence            4569999999999999999999     8899988888877654 23221  12344455567778889999998533211


Q ss_pred             CCeEEEEeCCCCeeEEEcCeEEEccCCCCC---CCCCCCCCCcceechhhHh---------------------cchH---
Q psy14927        869 PNTVTVIKSDGSTEEVKTKNILIATGSEVT---PFPGIEVDEETIVSSTGAL---------------------SLKK---  921 (1074)
Q Consensus       869 ~~~~~v~~~~G~~~~i~~d~lIIATG~~p~---~ipgi~~~~~~v~t~~~~~---------------------~~~~---  921 (1074)
                           +...+   ....||+||+|||+.+.   .+|+...  ..+++..+++                     ..++   
T Consensus       404 -----i~~~~---~~~~~DavilAtGa~~~~~l~i~g~~~--~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvV  473 (654)
T PRK12769        404 -----ISLES---LLEDYDAVFVGVGTYRSMKAGLPNEDA--PGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVV  473 (654)
T ss_pred             -----CCHHH---HHhcCCEEEEeCCCCCCCCCCCCCCCC--CCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEE
Confidence                 11111   12469999999999753   3454322  2333221111                     0011   


Q ss_pred             ----------hhHHhhcCC-cEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecC-Ce-EEEEEeec
Q psy14927        922 ----------GSVWGRLGA-EVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSG-DN-ITVTIENV  988 (1074)
Q Consensus       922 ----------A~~l~~~G~-~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~-~~-~~v~~~~~  988 (1074)
                                |..+.++|. +||++++++...++..+.+     .+.+++.||++++++.++++..++ +. ..|++...
T Consensus       474 IGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~e-----~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~  548 (654)
T PRK12769        474 LGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKKE-----VKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRT  548 (654)
T ss_pred             ECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHHH-----HHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEE
Confidence                      556677886 7999998876543544333     356788999999999999997533 22 23443210


Q ss_pred             -----cC---------CCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCC----CCCCCCCCEEEecccC
Q psy14927        989 -----KD---------PTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNS----RFQTVIPNIFAIGDCI 1050 (1074)
Q Consensus       989 -----~~---------~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~----~~~ts~~~IyAiGD~~ 1050 (1074)
                           +.         +|+..++++|+||+++|+.|++..+ +...+++++++|.|.||+    +++||.|||||+||++
T Consensus       549 ~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~-~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~  627 (654)
T PRK12769        549 RLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPW-LESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAV  627 (654)
T ss_pred             EecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCcccc-ccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcC
Confidence                 00         1334579999999999999986432 677899999999999985    4899999999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHhh
Q psy14927       1051 HGPMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1051 ~~~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                      .++.++..|+.+|+.||.+|.
T Consensus       628 ~g~~~vv~Ai~~Gr~AA~~I~  648 (654)
T PRK12769        628 RGADLVVTAMAEGRHAAQGII  648 (654)
T ss_pred             CCCcHHHHHHHHHHHHHHHHH
Confidence            998899999999999999986

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=99.89  E-value=1.2e-22  Score=242.21  Aligned_cols=264  Identities=20%  Similarity=0.182  Sum_probs=181.6

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEec
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITG  868 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id  868 (1074)
                      .++|+||||||+|+++|..|++     ++|++.+..|+.+.+. ++.+..  ...+.....+.+...||+++.++.+..+
T Consensus       143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g-ip~~~~--~~~~~~~~~~~~~~~gv~~~~~~~v~~~  219 (471)
T PRK12810        143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYG-IPDFKL--EKEVIDRRIELMEAEGIEFRTNVEVGKD  219 (471)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeec-CCcccC--CHHHHHHHHHHHHhCCcEEEeCCEECCc
Confidence            4569999999999999999999     7899988888776543 222211  1334444566778889999999654332


Q ss_pred             CCeEEEEeCCCCeeEEEcCeEEEccCCC-CC--CCCCCCCCCcceechhhHhc------------------chH------
Q psy14927        869 PNTVTVIKSDGSTEEVKTKNILIATGSE-VT--PFPGIEVDEETIVSSTGALS------------------LKK------  921 (1074)
Q Consensus       869 ~~~~~v~~~~G~~~~i~~d~lIIATG~~-p~--~ipgi~~~~~~v~t~~~~~~------------------~~~------  921 (1074)
                      ..     .. .  ....||+||||||+. |.  .+||..  ..++++..+++.                  .+.      
T Consensus       220 ~~-----~~-~--~~~~~d~vvlAtGa~~~~~l~ipG~~--~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGg  289 (471)
T PRK12810        220 IT-----AE-E--LLAEYDAVFLGTGAYKPRDLGIPGRD--LDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGG  289 (471)
T ss_pred             CC-----HH-H--HHhhCCEEEEecCCCCCCcCCCCCcc--CCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECC
Confidence            11     01 1  135799999999997 43  345432  234554332221                  011      


Q ss_pred             -------hhHHhhcCC-cEEEEecCCccCCCCCCH----HHH-HHHHHHHHhCCCEEEeCceEEEEEecCCeE-EEEEee
Q psy14927        922 -------GSVWGRLGA-EVTAIEFMNAIGGMGIDG----EVA-KQFQRILGKQGMQFKLGTKVTGASKSGDNI-TVTIEN  987 (1074)
Q Consensus       922 -------A~~l~~~G~-~Vtlv~~~~~~~~~~~~~----~~~-~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~-~v~~~~  987 (1074)
                             |..+.+.|. +||++++.+......++.    ... ....+.+.+.||++++++.+++|.++++.+ .|++..
T Consensus       290 G~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~  369 (471)
T PRK12810        290 GDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVR  369 (471)
T ss_pred             cHHHHHHHHHHHHcCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEE
Confidence                   556667775 799776554332111000    000 113456778899999999999998644443 344331


Q ss_pred             cc--------CCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeC-CCCCCCCCCEEEecccCCCCCcHHH
Q psy14927        988 VK--------DPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVN-SRFQTVIPNIFAIGDCIHGPMLAHK 1058 (1074)
Q Consensus       988 ~~--------~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd-~~~~ts~~~IyAiGD~~~~~~~~~~ 1058 (1074)
                      ..        .+|+..++++|.||+++|++|+...+ +...|++++++|+|.+| ++++|+.|||||+|||++++.++..
T Consensus       370 ~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l-~~~~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~~~~~~  448 (471)
T PRK12810        370 TELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGL-LAQFGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQSLVVW  448 (471)
T ss_pred             EEecCCCccccCCceEEEECCEEEECcCcCCCchhh-ccccCcccCCCCCEEeCCCcccCCCCCEEEccccCCCchhHHH
Confidence            10        02445789999999999999986433 67888999999999998 7999999999999999998888999


Q ss_pred             HHHHHHHHHHHhh
Q psy14927       1059 AEDEGIVCVEGIA 1071 (1074)
Q Consensus      1059 A~~~G~~aA~~I~ 1071 (1074)
                      |+.+|+.||.+|.
T Consensus       449 Av~~G~~AA~~i~  461 (471)
T PRK12810        449 AIAEGRQAARAID  461 (471)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999985

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.89  E-value=1.6e-22  Score=249.05  Aligned_cols=259  Identities=19%  Similarity=0.185  Sum_probs=181.7

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEec
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITG  868 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id  868 (1074)
                      .++|+||||||+|+++|..|++     ++|++.+..|+.+.+.. ++++  ....+.....+.+...||+|+.++....+
T Consensus       310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gi-p~~~--l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~  386 (639)
T PRK12809        310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGI-PPFK--LDKTVLSQRREIFTAMGIDFHLNCEIGRD  386 (639)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccC-Cccc--CCHHHHHHHHHHHHHCCeEEEcCCccCCc
Confidence            4559999999999999999999     89999999888876643 3322  11344445567788899999999532111


Q ss_pred             CCeEEEEeCCCCeeEEEcCeEEEccCCCCC---CCCCCCCCCcceechhhHh--------c-------------chH---
Q psy14927        869 PNTVTVIKSDGSTEEVKTKNILIATGSEVT---PFPGIEVDEETIVSSTGAL--------S-------------LKK---  921 (1074)
Q Consensus       869 ~~~~~v~~~~G~~~~i~~d~lIIATG~~p~---~ipgi~~~~~~v~t~~~~~--------~-------------~~~---  921 (1074)
                           +.+++   ....||+||+|||+.++   .+|+..  ...+++..+++        .             .++   
T Consensus       387 -----~~~~~---l~~~~DaV~latGa~~~~~~~i~g~~--~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvV  456 (639)
T PRK12809        387 -----ITFSD---LTSEYDAVFIGVGTYGMMRADLPHED--APGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVV  456 (639)
T ss_pred             -----CCHHH---HHhcCCEEEEeCCCCCCCCCCCCCCc--cCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEE
Confidence                 11111   13469999999999753   344432  22333321111        0             011   


Q ss_pred             ----------hhHHhhcCC-cEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-E-EEEEeec
Q psy14927        922 ----------GSVWGRLGA-EVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-I-TVTIENV  988 (1074)
Q Consensus       922 ----------A~~l~~~G~-~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~-~v~~~~~  988 (1074)
                                |..+.++|. +||++++++...++..+.++     ..+++.||++++++.+++|..++++ + .+.+...
T Consensus       457 iGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~~~e~-----~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~  531 (639)
T PRK12809        457 LGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRKEV-----VNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRT  531 (639)
T ss_pred             ECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHH-----HHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEE
Confidence                      555667784 89999998766445544433     2356889999999999999754332 2 2332110


Q ss_pred             -----cC---------CCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCC----CCCCCCCCEEEecccC
Q psy14927        989 -----KD---------PTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNS----RFQTVIPNIFAIGDCI 1050 (1074)
Q Consensus       989 -----~~---------~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~----~~~ts~~~IyAiGD~~ 1050 (1074)
                           ++         .|+..++++|.||+++|++|+...+ +...+++++++|+|.||+    +++|+.|+|||+||++
T Consensus       532 ~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~-~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~  610 (639)
T PRK12809        532 AMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPW-LQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAV  610 (639)
T ss_pred             EecCcCCCCCccceecCCceEEEECCEEEECcCCCCCcccc-ccccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCC
Confidence                 00         1345689999999999999976433 577889999999999985    4789999999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHhh
Q psy14927       1051 HGPMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1051 ~~~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                      .++.++..|+.+|+.||.+|.
T Consensus       611 ~g~~~vv~Ai~~Gr~AA~~i~  631 (639)
T PRK12809        611 HGADLVVTAMAAGRQAARDML  631 (639)
T ss_pred             CCchHHHHHHHHHHHHHHHHH
Confidence            988889999999999999986

>KOG0404|consensus

Probab=99.89  E-value=4.6e-23  Score=204.83  Aligned_cols=258  Identities=20%  Similarity=0.209  Sum_probs=191.4

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhcc----cccccc-------chhhhhhhhhHHHhhhhhhHHHHhhhCCeEE
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAG----DKGVKL-------NLETMMGTKSAAVKALTGGIAHLFKSNKVTQ  859 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~----~~g~~~-------~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~  859 (1074)
                      +|+|||.|||+..||++++|     .+||..-    .+|+++       +++.+|.+...  .++.+.++++..++|.++
T Consensus        10 ~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G--~~l~d~mrkqs~r~Gt~i   87 (322)
T KOG0404|consen   10 NVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITG--PELMDKMRKQSERFGTEI   87 (322)
T ss_pred             eEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCccccc--HHHHHHHHHHHHhhccee
Confidence            59999999999999999999     5777633    345554       34444444332  466778899999999999


Q ss_pred             EeeeEEEecC--CeEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCCCCc---ceech----hhHh---cch-----
Q psy14927        860 LNGHGKITGP--NTVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVDEE---TIVSS----TGAL---SLK-----  920 (1074)
Q Consensus       860 ~~g~v~~id~--~~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~~---~v~t~----~~~~---~~~-----  920 (1074)
                      +..+|..+|.  .-+++.++.+   .+.+|.||+|||+...  .+||-. +..   ..++.    +.+.   .-+     
T Consensus        88 ~tEtVskv~~sskpF~l~td~~---~v~~~avI~atGAsAkRl~~pg~g-e~~fWqrGiSaCAVCDGaapifrnk~laVI  163 (322)
T KOG0404|consen   88 ITETVSKVDLSSKPFKLWTDAR---PVTADAVILATGASAKRLHLPGEG-EGEFWQRGISACAVCDGAAPIFRNKPLAVI  163 (322)
T ss_pred             eeeehhhccccCCCeEEEecCC---ceeeeeEEEecccceeeeecCCCC-cchHHhcccchhhcccCcchhhcCCeeEEE
Confidence            9999988874  4566666554   7999999999999864  456531 111   11122    2111   100     


Q ss_pred             --------HhhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeeccCC
Q psy14927        921 --------KGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDP  991 (1074)
Q Consensus       921 --------~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~  991 (1074)
                              +|.+|.+.+.+|.+++|++.+..      ...+.++..+..+|++++++.+.+..++++. -.+.+++.. +
T Consensus       164 GGGDsA~EEA~fLtkyaskVyii~Rrd~fRA------s~~Mq~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~-t  236 (322)
T KOG0404|consen  164 GGGDSAMEEALFLTKYASKVYIIHRRDHFRA------SKIMQQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVK-T  236 (322)
T ss_pred             cCcHHHHHHHHHHHhhccEEEEEEEhhhhhH------HHHHHHHHhcCCCeEEEechhhhhhccCcccccceEEEecc-c
Confidence                    08999999999999999998862      1223345567789999999999888876433 345666665 7


Q ss_pred             CCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeC-CCCCCCCCCEEEecccCCC-CCcHHHHHHHHHHHHHH
Q psy14927        992 TKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVN-SRFQTVIPNIFAIGDCIHG-PMLAHKAEDEGIVCVEG 1069 (1074)
Q Consensus       992 g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd-~~~~ts~~~IyAiGD~~~~-~~~~~~A~~~G~~aA~~ 1069 (1074)
                      |+...++.+-+++++|..|++.++  +. .+++|.+|+|.+- ..-.||+||+||+||+.+. ..++.+|...|.++|..
T Consensus       237 ge~~dl~v~GlFf~IGH~Pat~~l--~g-qve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~kyRQAvTaAgsGciaald  313 (322)
T KOG0404|consen  237 GEETDLPVSGLFFAIGHSPATKFL--KG-QVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDKKYRQAVTAAGSGCIAALD  313 (322)
T ss_pred             CcccccccceeEEEecCCchhhHh--cC-ceeeccCceEEeccCcccccccceeeccccchHHHHHHHhhhccchhhhhh
Confidence            888899999999999999999984  44 8999999999988 5667999999999999874 44678888888887754

>KOG2495|consensus

Probab=99.86  E-value=3.6e-21  Score=209.66  Aligned_cols=268  Identities=18%  Similarity=0.250  Sum_probs=189.8

Q ss_pred             cchhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhC--CeEEEeeeEE
Q psy14927        793 QRQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSN--KVTQLNGHGK  865 (1074)
Q Consensus       793 ~k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~--gV~~~~g~v~  865 (1074)
                      .|++|||+|.|++|.+.+..+-.     +++......-..+-++..+-+.-+. ..+........+..  ++.++....+
T Consensus        54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~-rSIvEPIr~i~r~k~~~~~y~eAec~  132 (491)
T KOG2495|consen   54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVEL-RSIVEPIRAIARKKNGEVKYLEAECT  132 (491)
T ss_pred             CCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceee-hhhhhhHHHHhhccCCCceEEecccE
Confidence            37779999999999999888877     3333333333333333333332221 33344444444433  7889999999


Q ss_pred             EecCCeEEEEeC----CC--CeeEEEcCeEEEccCCCCC--CCCCCCCCCcceechhhHhcchH----------------
Q psy14927        866 ITGPNTVTVIKS----DG--STEEVKTKNILIATGSEVT--PFPGIEVDEETIVSSTGALSLKK----------------  921 (1074)
Q Consensus       866 ~id~~~~~v~~~----~G--~~~~i~~d~lIIATG~~p~--~ipgi~~~~~~v~t~~~~~~~~~----------------  921 (1074)
                      .+|++..+|++.    ++  .+..+.|||||||+|+.|.  .+||+.....+.-...+..+.+.                
T Consensus       133 ~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~  212 (491)
T KOG2495|consen  133 KIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSD  212 (491)
T ss_pred             eecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCCh
Confidence            999987777652    22  2357999999999999983  46665332222112222222211                


Q ss_pred             ---------------------hhHHhhc--------------CCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEE
Q psy14927        922 ---------------------GSVWGRL--------------GAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFK  966 (1074)
Q Consensus       922 ---------------------A~~l~~~--------------G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~  966 (1074)
                                           |..|...              -.+||+++..+.++ +.|+..+.++.++.+.+.||.+.
T Consensus       213 eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL-~mFdkrl~~yae~~f~~~~I~~~  291 (491)
T KOG2495|consen  213 EERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHIL-NMFDKRLVEYAENQFVRDGIDLD  291 (491)
T ss_pred             HHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHH-HHHHHHHHHHHHHHhhhccceee
Confidence                                 3333221              24899999999999 89999999999999999999999


Q ss_pred             eCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCC--CeeeCCCCCC-CCCCE
Q psy14927        967 LGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKG--RVPVNSRFQT-VIPNI 1043 (1074)
Q Consensus       967 ~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G--~I~Vd~~~~t-s~~~I 1043 (1074)
                      .++.|..+++.  .  +..+..  +|+.++|++-+++|+||..|..-   ...+.-.+++.|  .+.||+++|. +.+||
T Consensus       292 ~~t~Vk~V~~~--~--I~~~~~--~g~~~~iPYG~lVWatG~~~rp~---~k~lm~~i~e~~rr~L~vDE~LrV~G~~nv  362 (491)
T KOG2495|consen  292 TGTMVKKVTEK--T--IHAKTK--DGEIEEIPYGLLVWATGNGPRPV---IKDLMKQIDEQGRRGLAVDEWLRVKGVKNV  362 (491)
T ss_pred             cccEEEeecCc--E--EEEEcC--CCceeeecceEEEecCCCCCchh---hhhHhhcCCccCceeeeeeceeeccCcCce
Confidence            99999999873  3  443332  37778999999999999988654   345555566777  8999999995 89999


Q ss_pred             EEecccCC---CCCcHHHHHHHHHHHHHHhh
Q psy14927       1044 FAIGDCIH---GPMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1044 yAiGD~~~---~~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                      ||+|||+.   .+++++.|.+||..+|.++-
T Consensus       363 fAiGDca~~~~~~~tAQVA~QqG~yLAk~fn  393 (491)
T KOG2495|consen  363 FAIGDCADQRGLKPTAQVAEQQGAYLAKNFN  393 (491)
T ss_pred             EEeccccccccCccHHHHHHHHHHHHHHHHH
Confidence            99999994   35589999999999999863

>KOG2247|consensus

Probab=99.85  E-value=4.9e-24  Score=232.80  Aligned_cols=316  Identities=12%  Similarity=0.029  Sum_probs=276.5

Q ss_pred             HHhhhcCCHHHHHHHHHHcCcccchhhhHh--hhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhh
Q psy14927          4 EETMKNGDIDRAIRMFEKAETHQQHVPRML--LENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLS   81 (1074)
Q Consensus         4 ~~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~   81 (1074)
                      +-|+.+++..||+++||..+.++ ++.-.|  .++|.++.+.+.++.+++++..||++.|-.+  ..|+ +|...+|++.
T Consensus       180 ~~L~v~~qegeta~ltevggepd-nm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~--pval-~fq~~~gni~  255 (615)
T KOG2247|consen  180 NTLSVTTQEGETASLTEVGGEPD-NMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDE--PVAL-QFQEKYGNIH  255 (615)
T ss_pred             HHHHHhhhccceeeeeeccCccc-hhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCC--ccce-EeeecCCcee
Confidence            45788899999999999999998 665444  4689999999999999999999999999988  7777 9999999999


Q ss_pred             hhhH-hh-ccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCc
Q psy14927         82 MVRV-LC-FLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGP  159 (1074)
Q Consensus        82 ~vr~-l~-~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~  159 (1074)
                      .+|+ +. ++.++..|..++.+|  ...+...|.+|.+. |+++|++|.+.++|+++||.|+..++...++.++.....-
T Consensus       256 cyrwylDg~i~igf~ag~iV~iS--~h~aeLgaeffqkl-dy~~aLqsiavsqcvnkaftlgdn~nkvRdl~el~e~y~n  332 (615)
T KOG2247|consen  256 CYRWYLDGYILIGFDAGYIVSIS--AHNAELGAEFFQKL-DYRGALQSIAVSQCVNKAFTLGDNMNKVRDLDELTEVYMN  332 (615)
T ss_pred             EEEEeccccccccccceeEEEEe--ccchHHHHHHHHHh-hHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            9999 66 799999999999987  77888999999999 9999999999999999999999999999998887644322


Q ss_pred             hhHHHHHHHHcc-CChhHHHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHH
Q psy14927        160 SEQIEAATYLET-IEPDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVM  238 (1074)
Q Consensus       160 ~~~~~~A~~~e~-~~~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~  238 (1074)
                      .  +..|+|++. ..+..|+++|..++++..|..+++|++                         |..+..+.+..+-..
T Consensus       333 ~--L~eaek~lge~~~t~dgqlyals~Q~g~l~~fLtKLp-------------------------ilc~a~Sn~i~ylt~  385 (615)
T KOG2247|consen  333 T--LIEAEKNLGEIEVTEDGQLYALSSQSGVLSIFLTKLP-------------------------ILCAAYSNSICYLTN  385 (615)
T ss_pred             H--HHHHHhccCceeeeeccceeeehhccchHHHHHHhhh-------------------------hhhhhhcchHHHHhh
Confidence            2  678899988 678999999999999999999999953                         444455566555566


Q ss_pred             HHHHHhcCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHhHHHHhhcCHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Q psy14927        239 AANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSV  318 (1074)
Q Consensus       239 aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~  318 (1074)
                      +.+++.++    .|++++..+++|.      .++.+++.+++.+ +.-|| ..+.+.|+.+.+.+++...+++-+|..++
T Consensus       386 L~evtvge----~~vep~~lftLyv------DaepTaV~vg~~h-lavGN-~nnRdlfY~mhQ~areK~~rveylmtv~~  453 (615)
T KOG2247|consen  386 LTEVTVGE----PEVEPKGLFTLYV------DAEPTAVGVGPLH-LAVGN-MNNRDLFYDMHQSAREKINRVEYLMTVTN  453 (615)
T ss_pred             hheeeecC----cccCCccceEEEE------ecccceEEEehHH-Hhhcc-chhHHHHHHHHHHHHHHhhccchhhhhhH
Confidence            66666665    4477788888898      7889999999999 99999 99999999999999999999999999998


Q ss_pred             HHHHH----HHHHhhcCChHHHhhHHHHHHHHHhhccCcchhHHHHHHHHHH
Q psy14927        319 VEKLA----EVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKI  366 (1074)
Q Consensus       319 ~~~~~----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  366 (1074)
                      +.++.    ++++. ++++..|+++|.+.+.++++||.|..++++|++++|.
T Consensus       454 I~LHsyyaa~~f~~-r~~lhLaAksl~~t~nvi~~Fpe~~~~~l~sya~~~~  504 (615)
T KOG2247|consen  454 IQLHSYYAAVNFGS-RLRLHLAAKSLMLTDNVIIEFPEARNATLYSYALTEN  504 (615)
T ss_pred             HHHHHHHHHHHHHh-HHHHHHHHHHHHhhhchhhcCcHhhhhhhheeeeecc
Confidence            88764    45555 6999999999999999999999999999999999998

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=99.85  E-value=7.8e-21  Score=226.54  Aligned_cols=263  Identities=20%  Similarity=0.223  Sum_probs=174.2

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEec
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITG  868 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id  868 (1074)
                      .++|+||||||+|+++|..|++     ++|++.+..|+.+.+. ++.+.  ....+.....+.+...||+++.++....+
T Consensus       143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~g-ip~~~--~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~  219 (485)
T TIGR01317       143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYG-IPNMK--LDKAIVDRRIDLLSAEGIDFVTNTEIGVD  219 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeecc-CCCcc--CCHHHHHHHHHHHHhCCCEEECCCEeCCc
Confidence            4569999999999999999998     8899888887766543 22211  11233444556778889999999644221


Q ss_pred             CCeEEEEeCCCCeeEEEcCeEEEccCCC-CC--CCCCCCCCCcceechhhHh--------------------cchH----
Q psy14927        869 PNTVTVIKSDGSTEEVKTKNILIATGSE-VT--PFPGIEVDEETIVSSTGAL--------------------SLKK----  921 (1074)
Q Consensus       869 ~~~~~v~~~~G~~~~i~~d~lIIATG~~-p~--~ipgi~~~~~~v~t~~~~~--------------------~~~~----  921 (1074)
                      .     .. ++  ....||.||||||++ |.  ++||..  ...+++..+++                    ..++    
T Consensus       220 ~-----~~-~~--~~~~~d~VilAtGa~~~~~l~i~G~~--~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvVi  289 (485)
T TIGR01317       220 I-----SA-DE--LKEQFDAVVLAGGATKPRDLPIPGRE--LKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVI  289 (485)
T ss_pred             c-----CH-HH--HHhhCCEEEEccCCCCCCcCCCCCcC--CCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEE
Confidence            1     11 11  235799999999998 53  344432  23444432221                    0111    


Q ss_pred             ---------hhHHhhcC-CcEEEEecCCccCCCC--------CCH--HHHHHHHHHHHhCCCEE-EeCceEEEEEecC-C
Q psy14927        922 ---------GSVWGRLG-AEVTAIEFMNAIGGMG--------IDG--EVAKQFQRILGKQGMQF-KLGTKVTGASKSG-D  979 (1074)
Q Consensus       922 ---------A~~l~~~G-~~Vtlv~~~~~~~~~~--------~~~--~~~~~~~~~l~~~gV~i-~~~~~v~~i~~~~-~  979 (1074)
                               |..+.++| .+|+++++.+..+...        ++.  ++.....+..+..||.+ ++++.+.+|.+++ +
T Consensus       290 GgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g  369 (485)
T TIGR01317       290 GGGDTGADCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEG  369 (485)
T ss_pred             CCcHHHHHHHHHHHHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCC
Confidence                     34455565 5799998877654111        111  12223344444567654 5678888887653 2


Q ss_pred             e-EEEEEee---c---c-------CCCCceEEEcCEEEEccCCc-ccCCccCccccCcccCCCCCeee-CCCCCCCCCCE
Q psy14927        980 N-ITVTIEN---V---K-------DPTKKEELSCDALLVCVGRR-PYTHNLGLEEIGIEKDEKGRVPV-NSRFQTVIPNI 1043 (1074)
Q Consensus       980 ~-~~v~~~~---~---~-------~~g~~~~i~~D~vi~a~G~~-p~~~~l~l~~~gl~ld~~G~I~V-d~~~~ts~~~I 1043 (1074)
                      . ..+++..   .   +       ..|+..++++|+||+++|+. |++.+  +...|++++++|+|.+ |++++|+.|||
T Consensus       370 ~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~--~~~~gl~~~~~G~i~~~~~~~~Ts~~gV  447 (485)
T TIGR01317       370 KVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQIL--LDDFGVKKTRRGNISAGYDDYSTSIPGV  447 (485)
T ss_pred             eEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCcccc--ccccCcccCCCCCEEecCCCceECCCCE
Confidence            2 2333211   0   0       01334689999999999996 88886  5678898888999954 57899999999


Q ss_pred             EEecccCCCCCcHHHHHHHHHHHHHHhh
Q psy14927       1044 FAIGDCIHGPMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1044 yAiGD~~~~~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                      ||+|||++++.++..|+.+|+.||.+|.
T Consensus       448 fAaGD~~~g~~~~~~Av~~G~~AA~~i~  475 (485)
T TIGR01317       448 FAAGDCRRGQSLIVWAINEGRKAAAAVD  475 (485)
T ss_pred             EEeeccCCCcHHHHHHHHHHHHHHHHHH
Confidence            9999999988889999999999999985

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>KOG1538|consensus

Probab=99.84  E-value=1.4e-20  Score=210.31  Aligned_cols=198  Identities=14%  Similarity=0.229  Sum_probs=178.5

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchhhhHhhh--cHHHHHHHhhcCCC---hHHHHHHHHHHHhccCHHHHHHHHHHhhChh
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHVPRMLLE--NTDKLEKYIIQSKD---PVLLKWWAQYIESTEDMDLAMKYYEEARDYL   80 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~   80 (1074)
                      +.=.|+|.||+++|.++| ++.++..||++  +|+.+++++.+.++   +.|.+..|.|+.+..+++.|+++...+||..
T Consensus       642 ~Ay~gKF~EAAklFk~~G-~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~  720 (1081)
T KOG1538|consen  642 FAYQGKFHEAAKLFKRSG-HENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHV  720 (1081)
T ss_pred             HHhhhhHHHHHHHHHHcC-chhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchh
Confidence            455799999999999999 55599999986  89999999999754   4488999999999999999999999999999


Q ss_pred             hhhhHhhccCCHHHHHHHHHh--cCChHHHHH-------------HHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhC
Q psy14927         81 SMVRVLCFLQDFSRAAELANA--SGDTAAAYH-------------LARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQA  145 (1074)
Q Consensus        81 ~~vr~l~~~~~~~~a~~i~~~--~~~~~~~~~-------------la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~  145 (1074)
                      .++.+....||.+.+.+|.+.  ..+.+....             .|++|.+.||..+-+++.+..+.|++||+||++| 
T Consensus       721 KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~ksiVqlHve~~~W~eAFalAe~h-  799 (1081)
T KOG1538|consen  721 KAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDLKSLVQLHVETQRWDEAFALAEKH-  799 (1081)
T ss_pred             hhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccHHHHhhheeecccchHhHhhhhhC-
Confidence            999999999999999999984  234444333             3488889999999999999999999999999999 


Q ss_pred             chHHHHHHhhhcCchhHHHHHHHHccCC-hhHHHHHHHHhCChHHHHHHHHhhc--------cCCcchHHHHHHHHHH
Q psy14927        146 LDDQLWNLALSAGPSEQIEAATYLETIE-PDKAVLLYHKAGALHKALDLAFKLT--------LSNSGLVFQIKAMKCL  214 (1074)
Q Consensus       146 ~~~~~~~l~~~~~~~~~~~~A~~~e~~~-~~~A~~ly~kaG~~~kAl~l~~~~~--------~~~~~~~~~~~a~k~l  214 (1074)
                               |+..++.+.+.|+|+.+++ |++|.+.|||||+-.+|..++-+++        +.|++|+||+++|++|
T Consensus       800 ---------Pe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav~E~Rf~DA~y~yw~L~~q~L  868 (1081)
T KOG1538|consen  800 ---------PEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAVAESRFNDAAYYYWMLSMQCL  868 (1081)
T ss_pred             ---------ccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhhhhhhhccchhHHHHhhhhhh
Confidence                     9999999999999999965 9999999999999999999999986        4678999999999999

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=99.84  E-value=3.4e-20  Score=225.99  Aligned_cols=257  Identities=20%  Similarity=0.240  Sum_probs=175.3

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEec
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITG  868 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id  868 (1074)
                      .++|+|||+||+||++|..|++     +++++.+..|+.+.+. ++.+.  ...++.....+.+.+.|+++..++....+
T Consensus       137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~g-ip~~~--~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~  213 (564)
T PRK12771        137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYG-IPAYR--LPREVLDAEIQRILDLGVEVRLGVRVGED  213 (564)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec-CCCcc--CCHHHHHHHHHHHHHCCCEEEeCCEECCc
Confidence            4559999999999999999988     7899988888877554 22221  11333333455667789999888432112


Q ss_pred             CCeEEEEeCCCCeeEEEcCeEEEccCCCCC---CCCCCCCCCcceechhhHhc----------chH-------------h
Q psy14927        869 PNTVTVIKSDGSTEEVKTKNILIATGSEVT---PFPGIEVDEETIVSSTGALS----------LKK-------------G  922 (1074)
Q Consensus       869 ~~~~~v~~~~G~~~~i~~d~lIIATG~~p~---~ipgi~~~~~~v~t~~~~~~----------~~~-------------A  922 (1074)
                      .....        ....||+||+|||+.+.   .+|+..  ...+++..+++.          .++             +
T Consensus       214 ~~~~~--------~~~~~D~Vi~AtG~~~~~~~~i~g~~--~~gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a  283 (564)
T PRK12771        214 ITLEQ--------LEGEFDAVFVAIGAQLGKRLPIPGED--AAGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAA  283 (564)
T ss_pred             CCHHH--------HHhhCCEEEEeeCCCCCCcCCCCCCc--cCCcEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHH
Confidence            11000        11248999999999753   344422  122333222221          111             5


Q ss_pred             hHHhhcC-CcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEE---ee----ccC---
Q psy14927        923 SVWGRLG-AEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTI---EN----VKD---  990 (1074)
Q Consensus       923 ~~l~~~G-~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~---~~----~~~---  990 (1074)
                      ..+.++| .+|+++++.+....+.....+     +...+.||++++++.+.++.+++++ +.+++   ..    .++   
T Consensus       284 ~~a~~lga~~v~ii~r~~~~~~~~~~~~~-----~~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~  358 (564)
T PRK12771        284 RTARRLGAEEVTIVYRRTREDMPAHDEEI-----EEALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPS  358 (564)
T ss_pred             HHHHHcCCCEEEEEEecCcccCCCCHHHH-----HHHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCee
Confidence            5566777 679999988754334443333     3345689999999999999875443 22222   11    000   


Q ss_pred             --CCCceEEEcCEEEEccCCcccCCccCccc-cCcccCCCCCeeeCC-CCCCCCCCEEEecccCCCCCcHHHHHHHHHHH
Q psy14927        991 --PTKKEELSCDALLVCVGRRPYTHNLGLEE-IGIEKDEKGRVPVNS-RFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVC 1066 (1074)
Q Consensus       991 --~g~~~~i~~D~vi~a~G~~p~~~~l~l~~-~gl~ld~~G~I~Vd~-~~~ts~~~IyAiGD~~~~~~~~~~A~~~G~~a 1066 (1074)
                        +|+..++++|+||+++|+.|++.++  .. .++. +++|+|.||+ +++|++||||++|||+.+|.++..|+.+|+.|
T Consensus       359 ~~~g~~~~i~~D~Vi~A~G~~p~~~~~--~~~~gl~-~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~~~v~~Av~~G~~a  435 (564)
T PRK12771        359 PVTGEEETLEADLVVLAIGQDIDSAGL--ESVPGVE-VGRGVVQVDPNFMMTGRPGVFAGGDMVPGPRTVTTAIGHGKKA  435 (564)
T ss_pred             ecCCceEEEECCEEEECcCCCCchhhh--hhccCcc-cCCCCEEeCCCCccCCCCCEEeccCcCCCchHHHHHHHHHHHH
Confidence              2445689999999999999998874  43 5777 7889999997 78899999999999999888999999999999


Q ss_pred             HHHhh
Q psy14927       1067 VEGIA 1071 (1074)
Q Consensus      1067 A~~I~ 1071 (1074)
                      |.+|.
T Consensus       436 A~~i~  440 (564)
T PRK12771        436 ARNID  440 (564)
T ss_pred             HHHHH
Confidence            99984

>PLN02852 ferredoxin-NADP+ reductase

Probab=99.84  E-value=4.4e-20  Score=216.38  Aligned_cols=269  Identities=15%  Similarity=0.111  Sum_probs=181.4

Q ss_pred             chhhhhhccccchHHHHHHHhh-------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEE
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKI  866 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~  866 (1074)
                      +++|+||||||||++||..|++       ++||+.+.+||.+.+...+.+.  ....+...+...+...+|+|+.+....
T Consensus        26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~--~~k~v~~~~~~~~~~~~v~~~~nv~vg  103 (491)
T PLN02852         26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHP--ETKNVTNQFSRVATDDRVSFFGNVTLG  103 (491)
T ss_pred             CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcc--hhHHHHHHHHHHHHHCCeEEEcCEEEC
Confidence            5569999999999999999974       8999999999988775434332  235566667777888899998873221


Q ss_pred             ecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCC-CCcceechhhHhc----------------chH--------
Q psy14927        867 TGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEV-DEETIVSSTGALS----------------LKK--------  921 (1074)
Q Consensus       867 id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~-~~~~v~t~~~~~~----------------~~~--------  921 (1074)
                           ..+++++-   ...||+||||||+.+...+++++ +...+++..++..                ..+        
T Consensus       104 -----~dvtl~~L---~~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgG  175 (491)
T PLN02852        104 -----RDVSLSEL---RDLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQG  175 (491)
T ss_pred             -----ccccHHHH---hhhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCC
Confidence                 12233332   24699999999998632223333 2345666655531                011        


Q ss_pred             ------hhHHhhc--------------------CC-cEEEEecCCccCCCCCCHHHHH----------------------
Q psy14927        922 ------GSVWGRL--------------------GA-EVTAIEFMNAIGGMGIDGEVAK----------------------  952 (1074)
Q Consensus       922 ------A~~l~~~--------------------G~-~Vtlv~~~~~~~~~~~~~~~~~----------------------  952 (1074)
                            |..+.+.                    |. +|+|+.|+...-.+...+++++                      
T Consensus       176 nvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~~~~~~~~~~~~~~~~  255 (491)
T PLN02852        176 NVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNVRVRIKEADLTLSPED  255 (491)
T ss_pred             HHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCCCceeechhhhccccch
Confidence                  5555443                    54 6999999885432222223222                      


Q ss_pred             ---------------HHHHHHHh---------CCCEEEeCceEEEEEec--C-C-eEEEEEeecc-------------CC
Q psy14927        953 ---------------QFQRILGK---------QGMQFKLGTKVTGASKS--G-D-NITVTIENVK-------------DP  991 (1074)
Q Consensus       953 ---------------~~~~~l~~---------~gV~i~~~~~v~~i~~~--~-~-~~~v~~~~~~-------------~~  991 (1074)
                                     .+.+...+         ++|.|++...+.+|.++  + + ...+++....             ++
T Consensus       256 ~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~t  335 (491)
T PLN02852        256 EEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGT  335 (491)
T ss_pred             hhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCC
Confidence                           11112112         57999999999999842  1 2 2334443110             13


Q ss_pred             CCceEEEcCEEEEccCCc--ccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCC-cHHHHHHHHHHHHH
Q psy14927        992 TKKEELSCDALLVCVGRR--PYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPM-LAHKAEDEGIVCVE 1068 (1074)
Q Consensus       992 g~~~~i~~D~vi~a~G~~--p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~-~~~~A~~~G~~aA~ 1068 (1074)
                      |+.++++||.||.++|++  |.+.+......++..+.+|+|.+|+.++|+.|||||+|||..+|. .+..++.+|..++.
T Consensus       336 ge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~~~T~ipGvyAaGDi~~Gp~gvI~t~~~dA~~ta~  415 (491)
T PLN02852        336 GEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSASGADTEPGLYVVGWLKRGPTGIIGTNLTCAEETVA  415 (491)
T ss_pred             CCEEEEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCCCccCCCCEEEeeeEecCCCCeeeecHhhHHHHHH
Confidence            556789999999999998  555531023446777889999999888999999999999999876 78889999999999


Q ss_pred             HhhC
Q psy14927       1069 GIAG 1072 (1074)
Q Consensus      1069 ~I~~ 1072 (1074)
                      +|+.
T Consensus       416 ~i~~  419 (491)
T PLN02852        416 SIAE  419 (491)
T ss_pred             HHHH
Confidence            8863

>PRK13984 putative oxidoreductase; Provisional

Probab=99.83  E-value=3.5e-20  Score=228.10  Aligned_cols=257  Identities=19%  Similarity=0.211  Sum_probs=171.2

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEec
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITG  868 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id  868 (1074)
                      .++|+|||+||+|+++|..|++     ++|++.+..|+.+.+. ++...  ...++.....+.+...||+++.++.+..+
T Consensus       283 ~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~-i~~~~--~~~~~~~~~~~~~~~~gv~~~~~~~v~~~  359 (604)
T PRK13984        283 NKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYG-IPSYR--LPDEALDKDIAFIEALGVKIHLNTRVGKD  359 (604)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeec-CCccc--CCHHHHHHHHHHHHHCCcEEECCCEeCCc
Confidence            5569999999999999999999     7888888887766543 22111  12334444566788899999999543222


Q ss_pred             CCeEEEEeCCCCeeEEEcCeEEEccCCCC---CCCCCCCCCCcceechhhHhc---------------chH---------
Q psy14927        869 PNTVTVIKSDGSTEEVKTKNILIATGSEV---TPFPGIEVDEETIVSSTGALS---------------LKK---------  921 (1074)
Q Consensus       869 ~~~~~v~~~~G~~~~i~~d~lIIATG~~p---~~ipgi~~~~~~v~t~~~~~~---------------~~~---------  921 (1074)
                           +..++   ....||+||||||+.+   +++||..  ...+++..+++.               .+.         
T Consensus       360 -----~~~~~---~~~~yD~vilAtGa~~~r~l~i~G~~--~~gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~  429 (604)
T PRK13984        360 -----IPLEE---LREKHDAVFLSTGFTLGRSTRIPGTD--HPDVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNV  429 (604)
T ss_pred             -----CCHHH---HHhcCCEEEEEcCcCCCccCCCCCcC--CcCeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchH
Confidence                 11111   1357999999999874   2445542  234554444332               011         


Q ss_pred             ----hhHHhhcC------CcEEEEecCC--ccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeec
Q psy14927        922 ----GSVWGRLG------AEVTAIEFMN--AIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENV  988 (1074)
Q Consensus       922 ----A~~l~~~G------~~Vtlv~~~~--~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~  988 (1074)
                          |..+.++|      .+|+++....  ..+ +....+    +.+ +.+.||++++++.+.++..+++. ..|++...
T Consensus       430 g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~-~~~~~e----~~~-~~~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~  503 (604)
T PRK13984        430 AMDIARSMARLQKMEYGEVNVKVTSLERTFEEM-PADMEE----IEE-GLEEGVVIYPGWGPMEVVIENDKVKGVKFKKC  503 (604)
T ss_pred             HHHHHHHHHhccccccCceEEEEeccccCcccC-CCCHHH----HHH-HHHcCCEEEeCCCCEEEEccCCEEEEEEEEEE
Confidence                66777664      3788874321  122 222222    222 34679999999999888754443 23433210


Q ss_pred             ------c-------CCCCceEEEcCEEEEccCCcccCCccCcc-ccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCC
Q psy14927        989 ------K-------DPTKKEELSCDALLVCVGRRPYTHNLGLE-EIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPM 1054 (1074)
Q Consensus       989 ------~-------~~g~~~~i~~D~vi~a~G~~p~~~~l~l~-~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~ 1054 (1074)
                            +       .+|.+.++++|.||+++|++|+++++... ..++++ ++|+|.||++++|++|||||+|||+.++.
T Consensus       504 ~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~-~~G~i~vd~~~~Ts~~gVfAaGD~~~~~~  582 (604)
T PRK13984        504 VEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEF-VRGRILTNEYGQTSIPWLFAGGDIVHGPD  582 (604)
T ss_pred             eeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccc-cCCeEEeCCCCccCCCCEEEecCcCCchH
Confidence                  0       01345689999999999999999875311 124555 46889999999999999999999998874


Q ss_pred             cHHHHHHHHHHHHHHhh
Q psy14927       1055 LAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1055 ~~~~A~~~G~~aA~~I~ 1071 (1074)
                       ...|+.+|+.||.+|.
T Consensus       583 -~v~Ai~~G~~AA~~I~  598 (604)
T PRK13984        583 -IIHGVADGYWAAEGID  598 (604)
T ss_pred             -HHHHHHHHHHHHHHHH
Confidence             5789999999999985

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=1.2e-20  Score=198.97  Aligned_cols=262  Identities=21%  Similarity=0.258  Sum_probs=190.3

Q ss_pred             hhhhhhccccchHHHHHHHhh----hhhhhcccccccc----chhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEE
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT----KLFTQAGDKGVKL----NLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGK  865 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~----~l~e~~~~~g~~~----~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~  865 (1074)
                      .+|+|+||||||-+||++.+|    |-+- ..+.||++    ...++.+-....-..+...+.+..+.+.|+++.. +++
T Consensus       212 yDVLvVGgGPAgaaAAiYaARKGiRTGl~-aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra~  290 (520)
T COG3634         212 YDVLVVGGGPAGAAAAIYAARKGIRTGLV-AERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRAS  290 (520)
T ss_pred             ceEEEEcCCcchhHHHHHHHhhcchhhhh-hhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhhhh
Confidence            349999999999999999999    2111 23445543    3444444333333456666788888889998877 555


Q ss_pred             EecC-----CeEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCCC---Cc-ceechhhHhcchH-------------
Q psy14927        866 ITGP-----NTVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVD---EE-TIVSSTGALSLKK-------------  921 (1074)
Q Consensus       866 ~id~-----~~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~---~~-~v~t~~~~~~~~~-------------  921 (1074)
                      .+.+     +..+|++++|  -.+.++.+|||||++-+  .+||-...   +. +|-+|+.-+...+             
T Consensus       291 ~l~~a~~~~~l~ev~l~nG--avLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDGPLF~gK~VAVIGGGNSGvE  368 (520)
T COG3634         291 KLEPAAVEGGLIEVELANG--AVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVE  368 (520)
T ss_pred             cceecCCCCccEEEEecCC--ceeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCCCcccCCceEEEECCCcchHH
Confidence            5544     4688999999  68999999999999754  45653211   11 2335555443333             


Q ss_pred             -hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHH-hCCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEE
Q psy14927        922 -GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILG-KQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELS  998 (1074)
Q Consensus       922 -A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~-~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~  998 (1074)
                       |..|+-.-..||+++-.+.+.       ....+++.|. -.+|.++++...++|.++++. ..+.+.+.. +|+...++
T Consensus       369 AAIDLAGiv~hVtllEF~~eLk-------AD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~-sge~~~l~  440 (520)
T COG3634         369 AAIDLAGIVEHVTLLEFAPELK-------ADAVLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRV-SGEEHHLE  440 (520)
T ss_pred             HHHhHHhhhheeeeeecchhhh-------hHHHHHHHHhcCCCcEEEecceeeEEecCCceecceEEEecc-CCceeEEE
Confidence             555555556899998766654       2334455554 358999999999999998655 456777665 78888899


Q ss_pred             cCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCC-CcHHHHHHHHHHHHHHh
Q psy14927        999 CDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGP-MLAHKAEDEGIVCVEGI 1070 (1074)
Q Consensus       999 ~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~-~~~~~A~~~G~~aA~~I 1070 (1074)
                      -+-|++-+|..||++|  ++.. +++++.|-|.||....||+|||||+|||+..| +++..|+.+|..|+-+.
T Consensus       441 LeGvFVqIGL~PNT~W--Lkg~-vel~~rGEIivD~~g~TsvpGvFAAGD~T~~~yKQIIIamG~GA~AaL~A  510 (520)
T COG3634         441 LEGVFVQIGLLPNTEW--LKGA-VELNRRGEIIVDARGETNVPGVFAAGDCTTVPYKQIIIAMGEGAKASLSA  510 (520)
T ss_pred             eeeeEEEEecccChhH--hhch-hhcCcCccEEEecCCCcCCCceeecCcccCCccceEEEEecCcchhhhhh
Confidence            9999999999999999  4555 89999999999999999999999999999864 46777788877777654

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=99.80  E-value=1.5e-18  Score=223.01  Aligned_cols=254  Identities=17%  Similarity=0.117  Sum_probs=172.1

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhh-hhhhhHHHhhhhhhHHHHhhhC-CeEEEee-eEEE
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETM-MGTKSAAVKALTGGIAHLFKSN-KVTQLNG-HGKI  866 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~-gV~~~~g-~v~~  866 (1074)
                      .+|+|||||||||+||+++++     +++|+.+..|+++..... .....  ..++.....+.+... +|+++.+ +|..
T Consensus       164 ~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~--~~~~~~~~~~~l~~~~~v~v~~~t~V~~  241 (985)
T TIGR01372       164 CDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKP--AADWAAATVAELTAMPEVTLLPRTTAFG  241 (985)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCcc--HHHHHHHHHHHHhcCCCcEEEcCCEEEE
Confidence            459999999999999999999     899998888887754321 11111  123333455556555 5999987 5666


Q ss_pred             ecCCeEEEEe---C-------C----CCeeEEEcCeEEEccCCCCC--CCCCCCCCCcceechhhHh---cc------hH
Q psy14927        867 TGPNTVTVIK---S-------D----GSTEEVKTKNILIATGSEVT--PFPGIEVDEETIVSSTGAL---SL------KK  921 (1074)
Q Consensus       867 id~~~~~v~~---~-------~----G~~~~i~~d~lIIATG~~p~--~ipgi~~~~~~v~t~~~~~---~~------~~  921 (1074)
                      +.........   .       +    +...++.||+||||||+.|.  ++||+  +.+.+++.....   ..      +.
T Consensus       242 i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~pipG~--~~pgV~~~~~~~~~l~~~~~~~gk~  319 (985)
T TIGR01372       242 YYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLVFANN--DRPGVMLAGAARTYLNRYGVAPGKR  319 (985)
T ss_pred             EecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCCCCCC--CCCCcEEchHHHHHHHhhCcCCCCe
Confidence            6543211111   0       1    11136899999999999874  34554  334455442222   11      11


Q ss_pred             -------------hhHHhhcCC-cEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEee
Q psy14927        922 -------------GSVWGRLGA-EVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIEN  987 (1074)
Q Consensus       922 -------------A~~l~~~G~-~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~  987 (1074)
                                   |..|.+.|. .|+|+++.+.+.         ..+.+.|++.||++++++.+.++.+++....|++..
T Consensus       320 VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~~---------~~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~  390 (985)
T TIGR01372       320 IVVATNNDSAYRAAADLLAAGIAVVAIIDARADVS---------PEARAEARELGIEVLTGHVVAATEGGKRVSGVAVAR  390 (985)
T ss_pred             EEEECCCHHHHHHHHHHHHcCCceEEEEccCcchh---------HHHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEe
Confidence                         788888995 578887664332         345677899999999999999998765444555553


Q ss_pred             ccCCCCceEEEcCEEEEccCCcccCCccCccccCcc--cCCC--CCeeeCCCCCCCCCCEEEecccCCCCCcHHHHHHHH
Q psy14927        988 VKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIE--KDEK--GRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEG 1063 (1074)
Q Consensus       988 ~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~--ld~~--G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~~~A~~~G 1063 (1074)
                      .  ++.+++++||.|++++|++||+++  +..+|++  +++.  +++.     .|++|+||++||+++.. .+..|+.+|
T Consensus       391 ~--~g~~~~i~~D~V~va~G~~Pnt~L--~~~lg~~~~~~~~~~~~~~-----~t~v~gVyaaGD~~g~~-~~~~A~~eG  460 (985)
T TIGR01372       391 N--GGAGQRLEADALAVSGGWTPVVHL--FSQRGGKLAWDAAIAAFLP-----GDAVQGCILAGAANGLF-GLAAALADG  460 (985)
T ss_pred             c--CCceEEEECCEEEEcCCcCchhHH--HHhcCCCeeeccccCceec-----CCCCCCeEEeeccCCcc-CHHHHHHHH
Confidence            1  245678999999999999999997  4444443  3332  2221     37899999999988655 677899999


Q ss_pred             HHHHHHhh
Q psy14927       1064 IVCVEGIA 1071 (1074)
Q Consensus      1064 ~~aA~~I~ 1071 (1074)
                      ..||..|+
T Consensus       461 ~~Aa~~i~  468 (985)
T TIGR01372       461 AAAGAAAA  468 (985)
T ss_pred             HHHHHHHH
Confidence            99999885

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=99.75  E-value=3e-17  Score=193.53  Aligned_cols=262  Identities=24%  Similarity=0.288  Sum_probs=186.1

Q ss_pred             hhhhccccchHHHHHHHhh-------hhhhhccccc--cccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEE
Q psy14927        797 VLNTLGNCAAVQANYHLAT-------KLFTQAGDKG--VKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKI  866 (1074)
Q Consensus       797 VviiGgG~AGl~aA~~la~-------~l~e~~~~~g--~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~  866 (1074)
                      ++|+|+|++|+++|..+.+       +++.......  .......+..... ....+..... .....++++..+ +|+.
T Consensus         1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~i~~~~~~~v~~   78 (415)
T COG0446           1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIA-SLEDLRYPPR-FNRATGIDVRTGTEVTS   78 (415)
T ss_pred             CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccC-CHHHhcccch-hHHhhCCEEeeCCEEEE
Confidence            5789999999999999887       2222222111  1111111111111 1122222222 224668999888 5999


Q ss_pred             ecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCccee-chhhHhcchH--------------------hhHH
Q psy14927        867 TGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIV-SSTGALSLKK--------------------GSVW  925 (1074)
Q Consensus       867 id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~-t~~~~~~~~~--------------------A~~l  925 (1074)
                      +|+....+.+.+|   ++.||+||||||++|...|+......+.. +..+......                    |..+
T Consensus        79 id~~~~~v~~~~g---~~~yd~LvlatGa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~  155 (415)
T COG0446          79 IDPENKVVLLDDG---EIEYDYLVLATGARPRPPPISDWEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAA  155 (415)
T ss_pred             ecCCCCEEEECCC---cccccEEEEcCCCcccCCCccccCceEEECCHHHHHHHHHHHhccCeEEEECCcHHHHHHHHHH
Confidence            9999999999888   89999999999999865552221212221 3333332221                    8888


Q ss_pred             hhcCCcEEEEecCCccCCCCCC-HHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEE---EEEeeccCCCCceEEEcCE
Q psy14927        926 GRLGAEVTAIEFMNAIGGMGID-GEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNIT---VTIENVKDPTKKEELSCDA 1001 (1074)
Q Consensus       926 ~~~G~~Vtlv~~~~~~~~~~~~-~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~---v~~~~~~~~g~~~~i~~D~ 1001 (1074)
                      ++.|++||+++..++++ +.+. +++.+.+.+.+++.||+++++..+.+|+..++...   +...      .+..+++|.
T Consensus       156 ~~~G~~v~l~e~~~~~~-~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~------~~~~~~~d~  228 (415)
T COG0446         156 AKRGKKVTLIEAADRLG-GQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGI------DGEEIKADL  228 (415)
T ss_pred             HHcCCeEEEEEcccccc-hhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEe------CCcEEEeeE
Confidence            99999999999999998 5565 88999999999999999999999999998655432   2222      257899999


Q ss_pred             EEEccCCcccCCccCccccC-cccCCCCCeeeCCCCCCC-CCCEEEecccCCCC----------CcHHHHHHHHHHHHHH
Q psy14927       1002 LLVCVGRRPYTHNLGLEEIG-IEKDEKGRVPVNSRFQTV-IPNIFAIGDCIHGP----------MLAHKAEDEGIVCVEG 1069 (1074)
Q Consensus      1002 vi~a~G~~p~~~~l~l~~~g-l~ld~~G~I~Vd~~~~ts-~~~IyAiGD~~~~~----------~~~~~A~~~G~~aA~~ 1069 (1074)
                      +++++|.+||+.+  ....+ .....+|+|.||+.++|+ .++||++|||+..+          ..+..|..++++++.+
T Consensus       229 ~~~~~g~~p~~~l--~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~  306 (415)
T COG0446         229 VIIGPGERPNVVL--ANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAEN  306 (415)
T ss_pred             EEEeecccccHHH--HhhCccceeccCCCEEEccccccCCCCCEEeccceEeeecccCCceeeeechhhHhhhhHHHHHH
Confidence            9999999999765  33433 245677899999999997 99999999987632          2467889999999999


Q ss_pred             hhC
Q psy14927       1070 IAG 1072 (1074)
Q Consensus      1070 I~~ 1072 (1074)
                      +.+
T Consensus       307 ~~~  309 (415)
T COG0446         307 IAG  309 (415)
T ss_pred             hcc
Confidence            875

>KOG1335|consensus

Probab=99.74  E-value=3.3e-18  Score=183.34  Aligned_cols=157  Identities=49%  Similarity=0.668  Sum_probs=136.7

Q ss_pred             HhhhhhccccccccccCCceEEeccchhhccHHHH--hcccc------ccccccccccccccccccCCcceEEEEeccCC
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWTLLSLARV--LEGIE------YKVGKFPFAANSRAKTNNDTDGFVKVLGDKLT  440 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (1074)
                      .|+-+.+-.+..|+|-=.+||.+||+.-|.-.+-.  ++||.      ..-+.--+.-+|-+++.+|+.+.|+.++-.  
T Consensus       328 ~D~r~rv~v~~~f~t~vP~i~~IGDv~~gpMLAhkAeeegI~~VE~i~g~~~hv~ynciP~v~ythPEvawVG~TEeq--  405 (506)
T KOG1335|consen  328 LDKRGRVIVNTRFQTKVPHIYAIGDVTLGPMLAHKAEEEGIAAVEGIAGGHGHVDYNCIPSVVYTHPEVAWVGKTEEQ--  405 (506)
T ss_pred             cccccceeccccccccCCceEEecccCCcchhhhhhhhhchhheeeecccCcccccCCCCceeecccceeeeccchhh--
Confidence            46667777888899999999999999877654433  44443      222233455589999999999999988654  


Q ss_pred             CcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHHh
Q psy14927        441 DKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVA  520 (1074)
Q Consensus       441 ~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l~  520 (1074)
                             ++++|++|.++++||.++.||.+..+++||+|++.|++|++|||+||+||+|+|||+++.+|+..|.+.+|+.
T Consensus       406 -------lkeegi~y~vgkfpF~aNsRaktn~d~eg~vKvl~d~~tdkiLGvHiigp~AgEli~EA~lAieyGasaeDva  478 (506)
T KOG1335|consen  406 -------LKEEGIKYKVGKFPFSANSRAKTNNDTEGFVKVLADKETDKILGVHIIGPNAGELIHEASLAIEYGASAEDVA  478 (506)
T ss_pred             -------HHhcCcceEeeeccccccchhhccCCccceeEEEecCCCCcEEEEEEecCCHHHHHHHHHHHHHhCccHHHHh
Confidence                   8889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccCCccccccc
Q psy14927        521 RTCHAHPTVCVEKN  534 (1074)
Q Consensus       521 ~~~~~hPt~s~e~~  534 (1074)
                      +..|+|||+||.+.
T Consensus       479 rvchaHPTlSEa~k  492 (506)
T KOG1335|consen  479 RVCHAHPTLSEAFK  492 (506)
T ss_pred             hccCCCCcHHHHHH
Confidence            99999999998763

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=99.72  E-value=8.3e-18  Score=195.13  Aligned_cols=156  Identities=39%  Similarity=0.524  Sum_probs=138.0

Q ss_pred             HHhhhhhccccccccccC-CceEEeccch-----hhccHHH---Hhccccc-cccccccccccccccccCCcceEEEEec
Q psy14927        368 EVDKYLEMKRNQSFRSSN-TDIILPVEKW-----TLLSLAR---VLEGIEY-KVGKFPFAANSRAKTNNDTDGFVKVLGD  437 (1074)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (1074)
                      ++++.+.++.| +++||| .+||..||..     .-....|   |++++.. ......+..+|.+++.+|+.+.|++++.
T Consensus       285 ~~~~rg~I~VD-~~~~Tnvp~IyA~GDV~~~~~Lah~A~~eg~iaa~~i~g~~~~~~d~~~iP~~ift~Peia~VGlte~  363 (454)
T COG1249         285 ELDDRGFIKVD-DQMTTNVPGIYAIGDVIGGPMLAHVAMAEGRIAAENIAGGKRTPIDYRLIPSVVFTDPEIASVGLTEE  363 (454)
T ss_pred             eECCCCCEEeC-CccccCCCCEEEeeccCCCcccHhHHHHHHHHHHHHHhCCCCCcCcccCCCEEEECCCcceeeeCCHH
Confidence            46677788999 888888 9999999992     2223333   3666664 4445568899999999999999999988


Q ss_pred             cCCCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHH
Q psy14927        438 KLTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCE  517 (1074)
Q Consensus       438 ~~~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~  517 (1074)
                      .         ++++|+++++.+++|..++|+..+++++||+|+++|++|++|||+|++|++|+|||+.+++||++|.++.
T Consensus       364 e---------a~~~g~~~~~~~~~f~~~~ra~~~~~~~G~~Klv~d~~t~~IlGahivg~~A~ElI~~~~~a~~~g~t~~  434 (454)
T COG1249         364 E---------AKEAGIDYKVGKFPFAANGRAITMGETDGFVKLVVDKETGRILGAHIVGPGASELINEIALAIEMGATAE  434 (454)
T ss_pred             H---------HHhcCCceEEEEeecccchhHHhccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCcHH
Confidence            7         8899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcccCCcccccc
Q psy14927        518 DVARTCHAHPTVCVEK  533 (1074)
Q Consensus       518 ~l~~~~~~hPt~s~e~  533 (1074)
                      ++..++|+|||++|.+
T Consensus       435 ~~~~~i~~HPT~sE~~  450 (454)
T COG1249         435 DLALTIHAHPTLSEAL  450 (454)
T ss_pred             HHhcCCCCCCChHHHH
Confidence            9999999999999876

>KOG2041|consensus

Probab=99.70  E-value=3e-15  Score=169.29  Aligned_cols=281  Identities=18%  Similarity=0.193  Sum_probs=214.9

Q ss_pred             CCHHHHHHHHHHcCcccchh-hhHhhhcHHHHHHHhhcC----CChH---HHHHHHHHHHhccCHHHHHHHHHHhhChhh
Q psy14927         10 GDIDRAIRMFEKAETHQQHV-PRMLLENTDKLEKYIIQS----KDPV---LLKWWAQYIESTEDMDLAMKYYEEARDYLS   81 (1074)
Q Consensus        10 g~~~eA~~~Ye~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~---l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~   81 (1074)
                      |+|+||.++|-.+++.|..| .||.+++|+.+-+++...    +|..   -|+..|++.-....|++|.++|..++|-.+
T Consensus       748 g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~  827 (1189)
T KOG2041|consen  748 GEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTEN  827 (1189)
T ss_pred             cchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHh
Confidence            89999999999999999888 888889999999999983    2322   566779999999999999999999999999


Q ss_pred             hhhHhhccCCHHHHHHHHH-hcCChHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcC--
Q psy14927         82 MVRVLCFLQDFSRAAELAN-ASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAG--  158 (1074)
Q Consensus        82 ~vr~l~~~~~~~~a~~i~~-~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~--  158 (1074)
                      .+.+|.+++++++.+.+++ -+.+....-.+|.+|...|.+++|++.|.+.+.-..|+.-|+..|+|.+.+.|+....  
T Consensus       828 ~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~~l~  907 (1189)
T KOG2041|consen  828 QIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQRFQLP  907 (1189)
T ss_pred             HHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            9999999999999999998 5778888899999999999999999999999999999999999999999999986633  


Q ss_pred             c--hhHH-HHHHHHccCChhHHHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHH
Q psy14927        159 P--SEQI-EAATYLETIEPDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEI  235 (1074)
Q Consensus       159 ~--~~~~-~~A~~~e~~~~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l  235 (1074)
                      +  .... .+|++++.++..+|+++|.|||++-.|.+|+++..                     .+..-+.+..+|-+++
T Consensus       908 qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qma---------------------e~e~~K~~p~lr~Kkl  966 (1189)
T KOG2041|consen  908 QVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMA---------------------EREQEKYVPYLRLKKL  966 (1189)
T ss_pred             hHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHh---------------------HHHhhccCCHHHHHHH
Confidence            2  2233 37888899999999999999999999999999953                     2234566778999999


Q ss_pred             HHHHHHHHhcCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHh-----HHHHhhcCHHHHHHHHHHHHHHHHhcCCCc
Q psy14927        236 YVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSCAQ-----VEIDEFGNYEKGLGALNEAKRCLLKHNDSM  310 (1074)
Q Consensus       236 ~~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~a~-----~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~  310 (1074)
                      |+++|=..+.-     .+.++.+-+-|.+++. ++|....++.+-     .+=.-|+-.+ |-..+--|-++|.+.  .+
T Consensus       967 YVL~AlLvE~h-----~~~ik~~~~~~~~g~~-~dat~lles~~l~~~~ri~~n~WrgAE-AyHFmilAQrql~eg--~v 1037 (1189)
T KOG2041|consen  967 YVLGALLVENH-----RQTIKELRKIDKHGFL-EDATDLLESGLLAEQSRILENTWRGAE-AYHFMILAQRQLFEG--RV 1037 (1189)
T ss_pred             HHHHHHHHHHH-----HHHHHHhhhhhhcCcc-hhhhhhhhhhhhhhHHHHHHhhhhhHH-HHHHHHHHHHHHHhc--hH
Confidence            99988555432     2444555555555444 222222222211     1102333332 233334445555543  45


Q ss_pred             hHHHHHHHHH
Q psy14927        311 YETLKSSVVE  320 (1074)
Q Consensus       311 ~~~~~~~~~~  320 (1074)
                      +..+.++|.+
T Consensus      1038 ~~Al~Tal~L 1047 (1189)
T KOG2041|consen 1038 KDALQTALIL 1047 (1189)
T ss_pred             HHHHHHHhhh
Confidence            5556666665

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=99.67  E-value=1.1e-16  Score=185.96  Aligned_cols=266  Identities=20%  Similarity=0.164  Sum_probs=186.4

Q ss_pred             cchhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEe
Q psy14927        793 QRQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKIT  867 (1074)
Q Consensus       793 ~k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~i  867 (1074)
                      +.++|.|||+||||+++|..|++     ++|+..+..|+.+.+. ++.++.  .+++.+...+.+...||+|+.|.....
T Consensus       122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yG-IP~~kl--~k~i~d~~i~~l~~~Gv~~~~~~~vG~  198 (457)
T COG0493         122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYG-IPDFKL--PKDILDRRLELLERSGVEFKLNVRVGR  198 (457)
T ss_pred             CCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEec-Cchhhc--cchHHHHHHHHHHHcCeEEEEcceECC
Confidence            35679999999999999999999     8999999999998777 444432  267788888999999999999954432


Q ss_pred             cCCeEEEEeCCCCeeEEEcCeEEEccCCCCC---CCCCCCCCCcceechhhHhcchH-----------------------
Q psy14927        868 GPNTVTVIKSDGSTEEVKTKNILIATGSEVT---PFPGIEVDEETIVSSTGALSLKK-----------------------  921 (1074)
Q Consensus       868 d~~~~~v~~~~G~~~~i~~d~lIIATG~~p~---~ipgi~~~~~~v~t~~~~~~~~~-----------------------  921 (1074)
                      +..     ++.   ..-.||+++++||+.-+   .+||.+  ...+....+++....                       
T Consensus       199 ~it-----~~~---L~~e~Dav~l~~G~~~~~~l~i~g~d--~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVI  268 (457)
T COG0493         199 DIT-----LEE---LLKEYDAVFLATGAGKPRPLDIPGED--AKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVI  268 (457)
T ss_pred             cCC-----HHH---HHHhhCEEEEeccccCCCCCCCCCcC--CCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEE
Confidence            211     111   12357999999999632   344432  344554444443222                       


Q ss_pred             ---------hhHHhhcCC-cEEEEecCCcc-CCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe--EEEEEeec
Q psy14927        922 ---------GSVWGRLGA-EVTAIEFMNAI-GGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN--ITVTIENV  988 (1074)
Q Consensus       922 ---------A~~l~~~G~-~Vtlv~~~~~~-~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~~  988 (1074)
                               +....++|. +|+.+.+...- .....+..-.....+.....|+++.+.....++.+++++  ..+.+...
T Consensus       269 GgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~  348 (457)
T COG0493         269 GGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRV  348 (457)
T ss_pred             CCCCCHHHHHHHHhhcCCeEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEeecCCCcEeeeecccc
Confidence                     444455676 67777532222 111111112334456677889999999999999875444  22222110


Q ss_pred             ------c---------CCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCC-CCCCCCEEEecccCCC
Q psy14927        989 ------K---------DPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRF-QTVIPNIFAIGDCIHG 1052 (1074)
Q Consensus       989 ------~---------~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~-~ts~~~IyAiGD~~~~ 1052 (1074)
                            +         ..|+...+++|+|+.++|+.|+.........++..+..|.|.+++.+ +||.|+|||.||+.++
T Consensus       349 ~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g  428 (457)
T COG0493         349 EPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRG  428 (457)
T ss_pred             cccCcccccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccccCCCeeeCceeccc
Confidence                  0         03566789999999999999886653233447888999999999988 8999999999999998


Q ss_pred             CCcHHHHHHHHHHHHHHhh
Q psy14927       1053 PMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1053 ~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                      ..++..|+.+|+.+|..|-
T Consensus       429 ~~~vv~ai~eGr~aak~i~  447 (457)
T COG0493         429 AALVVWAIAEGREAAKAID  447 (457)
T ss_pred             hhhhhhHHhhchHHHHhhh
Confidence            8899999999999998874

>KOG3851|consensus

Probab=99.67  E-value=1e-16  Score=167.86  Aligned_cols=264  Identities=20%  Similarity=0.261  Sum_probs=171.2

Q ss_pred             chhhhhhccccchHHHHHHHhh-------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEE
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKI  866 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~  866 (1074)
                      +..|+|+|||.+|+..|..+.+       .++|..+.+..++-|.-+-.+.... +.-.....+ +-..|.+++...|..
T Consensus        39 h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l-~~srr~~a~-liP~~a~wi~ekv~~  116 (446)
T KOG3851|consen   39 HFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSL-DSSRRKQAS-LIPKGATWIKEKVKE  116 (446)
T ss_pred             ceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhh-hhccCcccc-cccCCcHHHHHHHHh
Confidence            4559999999999999999988       4566655555555443222222111 111111111 222366667777888


Q ss_pred             ecCCeEEEEeCCCCeeEEEcCeEEEccCCCC--CCCCCCCC--CCccee---c-------hhhHhcchH-----------
Q psy14927        867 TGPNTVTVIKSDGSTEEVKTKNILIATGSEV--TPFPGIEV--DEETIV---S-------STGALSLKK-----------  921 (1074)
Q Consensus       867 id~~~~~v~~~~G~~~~i~~d~lIIATG~~p--~~ipgi~~--~~~~v~---t-------~~~~~~~~~-----------  921 (1074)
                      .+|+...|.+.+|  ++|.||++|||+|...  -.|+|+..  +.+.+.   +       ...+++.++           
T Consensus       117 f~P~~N~v~t~gg--~eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfPntp  194 (446)
T KOG3851|consen  117 FNPDKNTVVTRGG--EEISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFKKGNAIFTFPNTP  194 (446)
T ss_pred             cCCCcCeEEccCC--cEEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHHHHhccCCceEEecCCCc
Confidence            8999999999999  7899999999999864  24555421  112222   1       111222111           


Q ss_pred             --------------hhHHhhcCC--cEEEE--ecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEE
Q psy14927        922 --------------GSVWGRLGA--EVTAI--EFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITV  983 (1074)
Q Consensus       922 --------------A~~l~~~G~--~Vtlv--~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v  983 (1074)
                                    -.++++.|+  ++.++  +.-+.++   --....+.+++..++++|++.+...+.+|..++...  
T Consensus       195 iKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iF---gVk~Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~A--  269 (446)
T KOG3851|consen  195 IKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIF---GVKHYADALEKVIQERNITVNYKRNLIEVRTNDRKA--  269 (446)
T ss_pred             cccCCCchhhhhhhHHHHHHhCccccccEEEecCcccee---cHHHHHHHHHHHHHhcceEeeeccceEEEeccchhh--
Confidence                          455677775  34444  3334443   125577888888899999999999999998765432  


Q ss_pred             EEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeC-CCCC-CCCCCEEEecccCCCCCc--HHHH
Q psy14927        984 TIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVN-SRFQ-TVIPNIFAIGDCIHGPML--AHKA 1059 (1074)
Q Consensus       984 ~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd-~~~~-ts~~~IyAiGD~~~~~~~--~~~A 1059 (1074)
                      .+++.+..|..++++++++-+.+..+++..   +..+.+ .|..||+.|| .++| +.+||||+||||.+.|..  +..+
T Consensus       270 vFe~L~kPG~t~ei~yslLHv~Ppms~pe~---l~~s~~-adktGfvdVD~~TlQs~kypNVFgiGDc~n~PnsKTaAAv  345 (446)
T KOG3851|consen  270 VFENLDKPGVTEEIEYSLLHVTPPMSTPEV---LANSDL-ADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPNSKTAAAV  345 (446)
T ss_pred             HHHhcCCCCceeEEeeeeeeccCCCCChhh---hhcCcc-cCcccceecChhhhccccCCCceeeccccCCCchhhHHHH
Confidence            233332148889999999999888776544   345553 3788999999 5677 589999999999998753  3334


Q ss_pred             HHHHHHHHHHh
Q psy14927       1060 EDEGIVCVEGI 1070 (1074)
Q Consensus      1060 ~~~G~~aA~~I 1070 (1074)
                      ..|..++-+|+
T Consensus       346 aaq~~vv~~nl  356 (446)
T KOG3851|consen  346 AAQSPVVDKNL  356 (446)
T ss_pred             HhcCchhhhhH
Confidence            45555555554

>KOG0399|consensus

Probab=99.63  E-value=7.2e-16  Score=181.57  Aligned_cols=267  Identities=16%  Similarity=0.147  Sum_probs=168.8

Q ss_pred             ccchhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEE
Q psy14927        792 DQRQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKI  866 (1074)
Q Consensus       792 ~~k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~  866 (1074)
                      .|.++|.|||.|||||+||-.|-+     ++||+.++.||.+.+..+-...+   +.+...-.+++.+.||+|++++-. 
T Consensus      1783 rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkld---k~vv~rrv~ll~~egi~f~tn~ei- 1858 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLD---KFVVQRRVDLLEQEGIRFVTNTEI- 1858 (2142)
T ss_pred             ccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchh---HHHHHHHHHHHHhhCceEEeeccc-
Confidence            357779999999999999999999     89999999999887764443333   235555678888899999999422 


Q ss_pred             ecCCeEEEEeCCCCeeEEEcCeEEEccCCC-CCCCCCCCCCCcceechhhHhcchH---------hhHHhhcCCcEEEEe
Q psy14927        867 TGPNTVTVIKSDGSTEEVKTKNILIATGSE-VTPFPGIEVDEETIVSSTGALSLKK---------GSVWGRLGAEVTAIE  936 (1074)
Q Consensus       867 id~~~~~v~~~~G~~~~i~~d~lIIATG~~-p~~ipgi~~~~~~v~t~~~~~~~~~---------A~~l~~~G~~Vtlv~  936 (1074)
                       ..+   +.+ |+  ..-.+|+||+|||++ |+++|.-+.+...+....+++....         ...+...|++|.++.
T Consensus      1859 -gk~---vs~-d~--l~~~~daiv~a~gst~prdlpv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivig 1931 (2142)
T KOG0399|consen 1859 -GKH---VSL-DE--LKKENDAIVLATGSTTPRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIG 1931 (2142)
T ss_pred             -ccc---ccH-HH--HhhccCeEEEEeCCCCCcCCCCCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEEC
Confidence             211   111 11  234689999999996 5555532234445555555554333         333444577777765


Q ss_pred             cCCc--------------------cCC------------CCCCHHHH-HHH-HHHHHhCCCEEEeCce-EEEEEecCCe-
Q psy14927        937 FMNA--------------------IGG------------MGIDGEVA-KQF-QRILGKQGMQFKLGTK-VTGASKSGDN-  980 (1074)
Q Consensus       937 ~~~~--------------------~~~------------~~~~~~~~-~~~-~~~l~~~gV~i~~~~~-v~~i~~~~~~-  980 (1074)
                      .++.                    +++            |..+.-++ ++= .+.-+..|-..++-+- .+++.+++++ 
T Consensus      1932 ggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~~~~g~dpr~y~vltk~f~~~~~g~ 2011 (2142)
T KOG0399|consen 1932 GGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAKEHYGSDPRTYSVLTKRFIGDDNGN 2011 (2142)
T ss_pred             CCCccccccccchhhccceecceeecCCCCcccCCCCCCccCceEEEeecchHHHHHHhCCCcceeeeeeeeeeccCCCc
Confidence            4332                    110            00000000 000 0111122222221111 1233333222 


Q ss_pred             ------EEEEEeecc--------CCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeC-CCCCCCCCCEEE
Q psy14927        981 ------ITVTIENVK--------DPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVN-SRFQTVIPNIFA 1045 (1074)
Q Consensus       981 ------~~v~~~~~~--------~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd-~~~~ts~~~IyA 1045 (1074)
                            +.|+++..+        -.+..+.++||+||++.|+..+.... .+..+++.|+++.|.+- +.+.|++++|||
T Consensus      2012 v~gl~~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe~~~-~~~~~~~~d~rsni~t~~~~y~t~v~~vfa 2090 (2142)
T KOG0399|consen 2012 VTGLETVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPEKSV-IEQLNLKTDPRSNILTPKDSYSTDVAKVFA 2090 (2142)
T ss_pred             eeeEEEEEEEEEecCCCceEEEEcCCcceeeecceeeeeccccCcchhh-hhhcCcccCccccccCCCccccccccceee
Confidence                  334443311        02446789999999999998554443 67889999999888664 678999999999


Q ss_pred             ecccCCCCCcHHHHHHHHHHHHHHh
Q psy14927       1046 IGDCIHGPMLAHKAEDEGIVCVEGI 1070 (1074)
Q Consensus      1046 iGD~~~~~~~~~~A~~~G~~aA~~I 1070 (1074)
                      +|||..+..++.+|+++|+.+|+.+
T Consensus      2091 agdcrrgqslvvwai~egrq~a~~v 2115 (2142)
T KOG0399|consen 2091 AGDCRRGQSLVVWAIQEGRQAARQV 2115 (2142)
T ss_pred             cccccCCceEEEEEehhhhHHHHHH
Confidence            9999999889999999999999875

>PRK14727 putative mercuric reductase; Provisional

Probab=99.63  E-value=6.1e-16  Score=185.17  Aligned_cols=156  Identities=22%  Similarity=0.210  Sum_probs=137.4

Q ss_pred             HhhhhhccccccccccCCceEEeccchh--------hccHHHHhccccccccccccccccccccccCCcceEEEEeccCC
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWT--------LLSLARVLEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLT  440 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (1074)
                      +++.+.+..|+++|||..+||..||..-        ......|..++......++....|.++..+++.++|++++.+  
T Consensus       297 ~~~~G~i~Vd~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~~~~~p~ia~vGlte~~--  374 (479)
T PRK14727        297 TDTSGAIVVNPAMETSAPDIYAAGDCSDLPQFVYVAAAAGSRAGINMTGGNATLDLSAMPAVIFTDPQVATVGLSEAK--  374 (479)
T ss_pred             ecCCCCEEECCCeecCCCCEEEeeecCCcchhhhHHHHHHHHHHHHHcCCCcccccccCCcEEEecCceeeeeCCHHH--
Confidence            5667778999999999999999999842        222333455555545567788899999999999999998777  


Q ss_pred             CcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHHh
Q psy14927        441 DKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVA  520 (1074)
Q Consensus       441 ~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l~  520 (1074)
                             ++..|+++.+..+++..++|+...+.+.||+||++|++|++|||+|++|++++|+|+.+++||+.+.|+++|.
T Consensus       375 -------a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~  447 (479)
T PRK14727        375 -------AHLSGIETISRVLTMENVPRALANFETDGFIKLVAEEGTRKLIGAQILAHEGGELIQSAALAIHNRMTVEELA  447 (479)
T ss_pred             -------HHHcCCceEEEEEEcccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHh
Confidence                   7788999999999999999999988899999999999999999999999999999999999999999999999


Q ss_pred             hhcccCCcccccc
Q psy14927        521 RTCHAHPTVCVEK  533 (1074)
Q Consensus       521 ~~~~~hPt~s~e~  533 (1074)
                      +++|+|||++|.+
T Consensus       448 ~~~~~hPt~~E~~  460 (479)
T PRK14727        448 DQLFPYLTMVEGL  460 (479)
T ss_pred             cCCccCCChHHHH
Confidence            9999999999865

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.62  E-value=9e-16  Score=183.17  Aligned_cols=156  Identities=31%  Similarity=0.366  Sum_probs=136.2

Q ss_pred             HhhhhhccccccccccCCceEEeccchhh-cc-------HHHHhccccccccccccccccccccccCCcceEEEEeccCC
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWTL-LS-------LARVLEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLT  440 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (1074)
                      +++.+.+..|+++||++.+||..||..-+ +.       ...|..++......++....|.++..+++.++|++++.+  
T Consensus       288 ~~~~G~I~Vd~~~~t~~p~VyAiGDv~~~~~la~~A~~eG~~aa~~i~g~~~~~~~~~~p~~~~~~p~ia~vGlte~e--  365 (471)
T PRK06467        288 VDERGFIRVDKQCRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGKKHYFDPKVIPSIAYTEPEVAWVGLTEKE--  365 (471)
T ss_pred             ECCCCcEeeCCCcccCCCCEEEehhhcCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEECCCceeEEECCHHH--
Confidence            55667788999999999999999997321 11       122345555555567788999999999999999998777  


Q ss_pred             CcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHHh
Q psy14927        441 DKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVA  520 (1074)
Q Consensus       441 ~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l~  520 (1074)
                             ++..|+++.+..+++..++|+...+.++||+|+++|++|++|||+|++|++++|+|+.+++||+.+.|+.+|.
T Consensus       366 -------a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~t~~ilG~~~vg~~a~e~i~~~a~ai~~~~t~~~l~  438 (471)
T PRK06467        366 -------AKEEGIEYETATFPWAASGRAIASDCADGMTKLIFDKETHRVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIA  438 (471)
T ss_pred             -------HHhcCCCeEEEEEecCcchhhhhCCCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHh
Confidence                   7778999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccCCcccccc
Q psy14927        521 RTCHAHPTVCVEK  533 (1074)
Q Consensus       521 ~~~~~hPt~s~e~  533 (1074)
                      +++++|||+++.+
T Consensus       439 ~~~~~hPt~~e~~  451 (471)
T PRK06467        439 LTIHAHPTLHESV  451 (471)
T ss_pred             hcccCCCChHHHH
Confidence            9999999999765

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=99.62  E-value=6.9e-16  Score=184.55  Aligned_cols=156  Identities=19%  Similarity=0.181  Sum_probs=135.9

Q ss_pred             HhhhhhccccccccccCCceEEeccchhh--------ccHHHHhccccccccccccccccccccccCCcceEEEEeccCC
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWTL--------LSLARVLEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLT  440 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (1074)
                      +++++.+..|..+||+..+||..||..-+        .....|..++.......++..+|.+++..|+.++|++++.+  
T Consensus       286 ~~~~G~i~vd~~~~t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~i~~~p~ia~vG~te~~--  363 (461)
T PRK05249        286 ADSRGQLKVNENYQTAVPHIYAVGDVIGFPSLASASMDQGRIAAQHAVGEATAHLIEDIPTGIYTIPEISSVGKTEQE--  363 (461)
T ss_pred             ecCCCcEeeCCCcccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcCCCcccccCCCCeEEECCCcceEecCCHHH--
Confidence            56778889999999999999999997421        12223355555444456778899999999999999998877  


Q ss_pred             CcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHHh
Q psy14927        441 DKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVA  520 (1074)
Q Consensus       441 ~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l~  520 (1074)
                             ++..|+++.+...+|..++|+...+.+.||+|+++|++|++|||+|++|++|+|+|+.+++||+.+.|+.+|.
T Consensus       364 -------a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~  436 (461)
T PRK05249        364 -------LTAAKVPYEVGRARFKELARAQIAGDNVGMLKILFHRETLEILGVHCFGERATEIIHIGQAIMEQKGTIEYFV  436 (461)
T ss_pred             -------HHHcCCCeEEEEEccccccceeecCCCCcEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHh
Confidence                   7778999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccCCcccccc
Q psy14927        521 RTCHAHPTVCVEK  533 (1074)
Q Consensus       521 ~~~~~hPt~s~e~  533 (1074)
                      +++|+|||+++..
T Consensus       437 ~~~~~~Pt~~e~~  449 (461)
T PRK05249        437 NTTFNYPTMAEAY  449 (461)
T ss_pred             cCccCCCCHHHHH
Confidence            9999999999765

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.62  E-value=7.9e-15  Score=173.08  Aligned_cols=250  Identities=14%  Similarity=0.125  Sum_probs=160.2

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhh------------------------------------
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLET------------------------------------  832 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~------------------------------------  832 (1074)
                      .++|+||||||+||.||.+|.+     ++||+.+..||.+.+..                                    
T Consensus        10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f~   89 (461)
T PLN02172         10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGYR   89 (461)
T ss_pred             CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccCC
Confidence            4559999999999999999998     89999998888764421                                    


Q ss_pred             -hhhhh-----------hHHHhhhhhhHHHHhhhCCeE--EEee-eEEEecC--CeEEEEeCCC--CeeEEEcCeEEEcc
Q psy14927        833 -MMGTK-----------SAAVKALTGGIAHLFKSNKVT--QLNG-HGKITGP--NTVTVIKSDG--STEEVKTKNILIAT  893 (1074)
Q Consensus       833 -~~~~~-----------~~~~~~l~~~~~~~l~~~gV~--~~~g-~v~~id~--~~~~v~~~~G--~~~~i~~d~lIIAT  893 (1074)
                       ++...           .....++..++..+...+|+.  +.++ +|+.+++  +.++|++.++  ...+..||+|||||
T Consensus        90 dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIvAt  169 (461)
T PLN02172         90 DFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVVCN  169 (461)
T ss_pred             CCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEEec
Confidence             00000           001245667788888888987  7777 6877764  4567766543  22357899999999


Q ss_pred             C--CCC--CCCCCCCCCCcceechhhHhc-----chH-------------hhHHhhcCCcEEEEecCCccCCCCCCHHHH
Q psy14927        894 G--SEV--TPFPGIEVDEETIVSSTGALS-----LKK-------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVA  951 (1074)
Q Consensus       894 G--~~p--~~ipgi~~~~~~v~t~~~~~~-----~~~-------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~  951 (1074)
                      |  +.|  +.+||+......++++.++..     .+.             |..|...+++|++++|+..+. . .     
T Consensus       170 G~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~~-~-~-----  242 (461)
T PLN02172        170 GHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASESD-T-Y-----  242 (461)
T ss_pred             cCCCCCcCCCCCCcccCCceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeecccc-c-c-----
Confidence            9  455  244554321222333333322     111             778888899999999876432 0 0     


Q ss_pred             HHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCee
Q psy14927        952 KQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVP 1031 (1074)
Q Consensus       952 ~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~ 1031 (1074)
                          ..+.....++..+..|..+.+++   .|.+.|    |  +.+++|.||+|||++|+.+++  ..       .|.|.
T Consensus       243 ----~~~~~~~~~v~~~~~I~~~~~~g---~V~f~D----G--~~~~~D~Ii~~TGy~~~~pfL--~~-------~~~i~  300 (461)
T PLN02172        243 ----EKLPVPQNNLWMHSEIDTAHEDG---SIVFKN----G--KVVYADTIVHCTGYKYHFPFL--ET-------NGYMR  300 (461)
T ss_pred             ----ccCcCCCCceEECCcccceecCC---eEEECC----C--CCccCCEEEECCcCCcccccc--Cc-------cccee
Confidence                11112234455566677665432   366666    3  468899999999999999984  32       23344


Q ss_pred             eCCC---------CCCC-CCCEEEecccCCCCCcHHHHHHHHHHHHHHhhCC
Q psy14927       1032 VNSR---------FQTV-IPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1032 Vd~~---------~~ts-~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      +|++         +-.. .|+++.+|=...+. ....+..|++.+|.-+.|.
T Consensus       301 v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~~-~f~~~E~Qa~~~a~v~sG~  351 (461)
T PLN02172        301 IDENRVEPLYKHVFPPALAPGLSFIGLPAMGI-QFVMFEIQSKWVAAVLSGR  351 (461)
T ss_pred             eCCCcchhhHHhhcCCCCCCcEEEEecccccc-CchhHHHHHHHHHHHHcCC
Confidence            4422         1233 48999999653333 3566788888888877653

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.62  E-value=9.1e-16  Score=183.38  Aligned_cols=156  Identities=26%  Similarity=0.361  Sum_probs=134.8

Q ss_pred             HhhhhhccccccccccCCceEEeccchhhc--------cHHHHhcccccccc-cc-ccccccccccccCCcceEEEEecc
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWTLL--------SLARVLEGIEYKVG-KF-PFAANSRAKTNNDTDGFVKVLGDK  438 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~  438 (1074)
                      +++.+.++.|+++|||+.+||..||...+.        ....|..++..... .+ ++..+|.++..+|+.++|++++.+
T Consensus       287 ~~~~g~i~vd~~~~Ts~p~IyAiGD~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~  366 (466)
T PRK07818        287 LTDRGAIAIDDYMRTNVPHIYAIGDVTAKLQLAHVAEAQGVVAAETIAGAETLELGDYRMMPRATFCQPQVASFGLTEEQ  366 (466)
T ss_pred             ECCCCcEeeCCCcccCCCCEEEEeecCCCcccHhHHHHHHHHHHHHHcCCCCCccCccCCCCeEEECCCCeEEEeCCHHH
Confidence            456677889999999999999999984332        22233555543322 23 567899999999999999998887


Q ss_pred             CCCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHH
Q psy14927        439 LTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCED  518 (1074)
Q Consensus       439 ~~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~  518 (1074)
                               ++..|+++.+..++|..++|+...+.+.||+|+++|++|++|||+|++|++++|+|+.+++|++.+.|+.+
T Consensus       367 ---------a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~~~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~  437 (466)
T PRK07818        367 ---------AREEGYDVKVAKFPFTANGKAHGLGDPTGFVKLVADAKYGELLGGHLIGPDVSELLPELTLAQKWDLTAEE  437 (466)
T ss_pred             ---------HHhCCCcEEEEEEECCccchhhhcCCCCeEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHH
Confidence                     77789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhcccCCcccccc
Q psy14927        519 VARTCHAHPTVCVEK  533 (1074)
Q Consensus       519 l~~~~~~hPt~s~e~  533 (1074)
                      |.+++|+|||++|.+
T Consensus       438 l~~~~~~hPt~~e~~  452 (466)
T PRK07818        438 LARNVHTHPTLSEAL  452 (466)
T ss_pred             HhcCccCCCchHHHH
Confidence            999999999999865

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=99.62  E-value=5.6e-15  Score=163.21  Aligned_cols=268  Identities=15%  Similarity=0.203  Sum_probs=172.2

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhcccccccc-chhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEe
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL-NLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKIT  867 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~-~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~i  867 (1074)
                      +.|+|||||+||++||+.|+.     .++|+.+..||.+ .+....+..+-..--+...+.+.-...+|++++. +|..+
T Consensus       125 ~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~ev  204 (622)
T COG1148         125 KSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEVEEV  204 (622)
T ss_pred             cceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeeeeee
Confidence            349999999999999999999     7999999999875 2333333322221222233344444445555554 33332


Q ss_pred             cC--CeEEE-----------------------------------------------------------------------
Q psy14927        868 GP--NTVTV-----------------------------------------------------------------------  874 (1074)
Q Consensus       868 d~--~~~~v-----------------------------------------------------------------------  874 (1074)
                      +.  ++++|                                                                       
T Consensus       205 ~G~vGnF~vki~kkpryVdd~CtgCg~C~~vCPve~~nefn~Gl~~~kAiy~p~~qaVp~~~~Id~~~c~~c~~C~~ac~  284 (622)
T COG1148         205 SGSVGNFTVKIEKKPRYVDDKCTGCGACSEVCPVEVPNEFNEGLGKRKAIYIPFPQAVPLNYNIDPKHCIECGLCEKACP  284 (622)
T ss_pred             cccccceEEEEecccccccccccccccccccCCcccCcccccccccceeeeccchhhcccccccChhhhccchhhhhcCC
Confidence            21  11111                                                                       


Q ss_pred             ----Ee-CCCCeeEEEcCeEEEccCCCCCCC---CCCC-CCCcceechhhHhcchH------------------------
Q psy14927        875 ----IK-SDGSTEEVKTKNILIATGSEVTPF---PGIE-VDEETIVSSTGALSLKK------------------------  921 (1074)
Q Consensus       875 ----~~-~~G~~~~i~~d~lIIATG~~p~~i---pgi~-~~~~~v~t~~~~~~~~~------------------------  921 (1074)
                          .+ .+++..+++...+|+|||-.+.+.   +..+ +..++++|..++..+..                        
T Consensus       285 ~~av~~~q~~e~ve~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~lElErml~~~GPT~GkvlrpSdg~~pKrVaFI  364 (622)
T COG1148         285 NEAVDLNQEPEEVELEVGAIIVATGYKPFDATRKEEYGYGKYPNVITNLELERMLNPNGPTGGKVLRPSDGKPPKRVAFI  364 (622)
T ss_pred             ccccccCCCCcEEEEEeceEEEEccccccCcchhhhcCCCCCcchhhHHHHHHHhccCCCCCceEEecCCCCCCceEEEE
Confidence                11 123445789999999999876321   1110 11233444444433221                        


Q ss_pred             --------------------------hhHHhhc--CCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEE
Q psy14927        922 --------------------------GSVWGRL--GAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTG  973 (1074)
Q Consensus       922 --------------------------A~~l~~~--G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~  973 (1074)
                                                |...++.  ..+|++.+.+-+-    ++....+...+.-++.||+++.+ ++.+
T Consensus       365 qCVGSRD~~~~n~YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiRa----fG~~yEefY~~~Q~~~gV~fIRG-rvae  439 (622)
T COG1148         365 QCVGSRDFQVGNPYCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIRA----FGKDYEEFYVRSQEDYGVRFIRG-RVAE  439 (622)
T ss_pred             EEecCcCcccCChhhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEeec----cCccHHHHHHhhhhhhchhhhcC-ChHH
Confidence                                      4444444  3578888766443    33334455555555889999987 5777


Q ss_pred             EEecCCe-EEEEEeeccCCCCceEEEcCEEEEccCCcccCCccC-ccccCcccCCCCCeeeC-CCCC---CCCCCEEEec
Q psy14927        974 ASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLG-LEEIGIEKDEKGRVPVN-SRFQ---TVIPNIFAIG 1047 (1074)
Q Consensus       974 i~~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~-l~~~gl~ld~~G~I~Vd-~~~~---ts~~~IyAiG 1047 (1074)
                      |...+++ +.|..+|+. .|+..++++|+|++++|..|....-. ...+|+..+++||+... +.++   |+.+|||.+|
T Consensus       440 i~e~p~~~l~V~~EdTl-~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG  518 (622)
T COG1148         440 IAEFPKKKLIVRVEDTL-TGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAG  518 (622)
T ss_pred             heeCCCCeeEEEEEecc-CccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEee
Confidence            7765554 577778766 67788999999999999998554211 45678999999999876 5555   7899999999


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHH
Q psy14927       1048 DCIHGPMLAHKAEDEGIVCVEG 1069 (1074)
Q Consensus      1048 D~~~~~~~~~~A~~~G~~aA~~ 1069 (1074)
                       ++.+|+-+..++.||..||..
T Consensus       519 -~aqgPkdI~~siaqa~aAA~k  539 (622)
T COG1148         519 -AAQGPKDIADSIAQAKAAAAK  539 (622)
T ss_pred             -cccCCccHHHHHHHhHHHHHH
Confidence             566788888888888877754

>PRK06370 mercuric reductase; Validated

Probab=99.62  E-value=9.9e-16  Score=183.03  Aligned_cols=156  Identities=26%  Similarity=0.250  Sum_probs=135.9

Q ss_pred             HhhhhhccccccccccCCceEEeccchhhc--------cHHHHhcccccc-ccccccccccccccccCCcceEEEEeccC
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWTLL--------SLARVLEGIEYK-VGKFPFAANSRAKTNNDTDGFVKVLGDKL  439 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (1074)
                      +++.+.++.++.+||+..+||..||..-+.        ....|.+++... ...++...+|.++..+++.+++++++.+ 
T Consensus       285 ~~~~G~i~vd~~l~t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~~~~~p~ia~vG~te~~-  363 (463)
T PRK06370        285 TDARGYIKVDDQLRTTNPGIYAAGDCNGRGAFTHTAYNDARIVAANLLDGGRRKVSDRIVPYATYTDPPLARVGMTEAE-  363 (463)
T ss_pred             ECCCCcEeECcCCcCCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhCCCCCCcccccCCeEEEcCCCcEeeeCCHHH-
Confidence            566677889999999999999999984322        222335555432 4456677889999999999999998877 


Q ss_pred             CCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHH
Q psy14927        440 TDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDV  519 (1074)
Q Consensus       440 ~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l  519 (1074)
                              ++..|+++.+.+.++..++|+...+.++||+|+++|++|++|||+|++|++++|+|+.+++|++.+.|+++|
T Consensus       364 --------a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l  435 (463)
T PRK06370        364 --------ARKSGRRVLVGTRPMTRVGRAVEKGETQGFMKVVVDADTDRILGATILGVHGDEMIHEILDAMYAGAPYTTL  435 (463)
T ss_pred             --------HHHcCCCeEEEEEecCcchhHHhcCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHH
Confidence                    777899999999999999999988999999999999999999999999999999999999999999999999


Q ss_pred             hhhcccCCcccccc
Q psy14927        520 ARTCHAHPTVCVEK  533 (1074)
Q Consensus       520 ~~~~~~hPt~s~e~  533 (1074)
                      .+++|+|||++|.+
T Consensus       436 ~~~~~~hPt~~e~~  449 (463)
T PRK06370        436 SRAIHIHPTVSELI  449 (463)
T ss_pred             hcCcccCCChHHHH
Confidence            99999999999865

>PRK14694 putative mercuric reductase; Provisional

Probab=99.61  E-value=1.3e-15  Score=182.01  Aligned_cols=154  Identities=17%  Similarity=0.215  Sum_probs=135.1

Q ss_pred             hhhhccccccccccCCceEEeccch--------hhccHHHHhccccccccccccccccccccccCCcceEEEEeccCCCc
Q psy14927        371 KYLEMKRNQSFRSSNTDIILPVEKW--------TLLSLARVLEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDK  442 (1074)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (1074)
                      +++.+..|+++|||..+||..||..        +......|..++......+++..+|.++..+++.+.|++++.+    
T Consensus       288 ~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~----  363 (468)
T PRK14694        288 ERGAIRIDEHLQTTVSGIYAAGDCTDQPQFVYVAAAGGSRAAINMTGGDASLDLSAMPEVIFTDPQVATVGLSEAE----  363 (468)
T ss_pred             CCCeEeeCCCcccCCCCEEEEeecCCCcccHHHHHHHHHHHHHHhcCCCcccccCCCCeEEECCCCeEEeeCCHHH----
Confidence            3566889999999999999999982        2222333455555444556777899999999999999998877    


Q ss_pred             ccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHHhhh
Q psy14927        443 VLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVART  522 (1074)
Q Consensus       443 ~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l~~~  522 (1074)
                           ++..|+++.+..+++..++|++..+.+.||+||++|++|++|||+|++|++++|+|+.+++||+.+.|+++|.++
T Consensus       364 -----a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~  438 (468)
T PRK14694        364 -----AQAQGYDTDSRTLDLENVPRALVNFDTGGFIKMVAERGSGRLLGVQVVAGEAGELIQTAVMALRARMTVNEIADE  438 (468)
T ss_pred             -----HHHcCCceEEEEEecccchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcc
Confidence                 888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCcccccc
Q psy14927        523 CHAHPTVCVEK  533 (1074)
Q Consensus       523 ~~~hPt~s~e~  533 (1074)
                      +|+|||++|.+
T Consensus       439 ~~~hPt~~e~~  449 (468)
T PRK14694        439 LFPYLTMVEGL  449 (468)
T ss_pred             ccCCCchHHHH
Confidence            99999999865

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=99.61  E-value=1.2e-15  Score=182.63  Aligned_cols=156  Identities=37%  Similarity=0.531  Sum_probs=135.6

Q ss_pred             HhhhhhccccccccccCCceEEeccchhhc--------cHHHHhccccccccccccccccccccccCCcceEEEEeccCC
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWTLL--------SLARVLEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLT  440 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (1074)
                      +++.+.++.++++||+..+||..||..-+.        ....|..++.......++..+|.++..+++.+.|++++.+  
T Consensus       298 ~~~~G~i~vd~~~~Ts~~~VyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~~~~~pe~a~vGlte~~--  375 (475)
T PRK06327        298 LDERGFIPVDDHCRTNVPNVYAIGDVVRGPMLAHKAEEEGVAVAERIAGQKGHIDYNTIPWVIYTSPEIAWVGKTEQQ--  375 (475)
T ss_pred             eCCCCeEeECCCCccCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEeCCcceEEEeCCHHH--
Confidence            566777889999999999999999984321        1223344454433445778899999999999999998776  


Q ss_pred             CcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHHh
Q psy14927        441 DKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVA  520 (1074)
Q Consensus       441 ~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l~  520 (1074)
                             ++..|+++.+..+++..++|+..++.+.||+|+++|++|++|||+|++|++++|+|+.+++||+.+.|+++|.
T Consensus       376 -------a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~  448 (475)
T PRK06327        376 -------LKAEGVEYKAGKFPFMANGRALAMGEPDGFVKIIADAKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDIA  448 (475)
T ss_pred             -------HHHcCCCEEEEEEcccccchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHh
Confidence                   7788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccCCcccccc
Q psy14927        521 RTCHAHPTVCVEK  533 (1074)
Q Consensus       521 ~~~~~hPt~s~e~  533 (1074)
                      +++|+|||+++.+
T Consensus       449 ~~~~~hPt~~e~~  461 (475)
T PRK06327        449 RICHAHPTLSEVW  461 (475)
T ss_pred             cCCcCCCChHHHH
Confidence            9999999999765

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=99.60  E-value=1.5e-15  Score=180.39  Aligned_cols=156  Identities=20%  Similarity=0.197  Sum_probs=133.5

Q ss_pred             HhhhhhccccccccccCCceEEeccchhh--------ccHHHHhcccccc-ccccccccccccccccCCcceEEEEeccC
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWTL--------LSLARVLEGIEYK-VGKFPFAANSRAKTNNDTDGFVKVLGDKL  439 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (1074)
                      +++++.+..|+++|||+.+||..||..-+        .....|..++... ...+++..+|.+++..|+.++|++++.+ 
T Consensus       277 ~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~~i~~~~~~~~~~~~~p~~if~~p~ia~vG~te~~-  355 (446)
T TIGR01424       277 LNDAGAIAVDEYSRTSIPSIYAVGDVTDRINLTPVAIMEATCFANTEFGNNPTKFDHDLIATAVFSQPPLGTVGLTEEE-  355 (446)
T ss_pred             ECCCCcEEeCCCCccCCCCEEEeeccCCCccchhHHHHHHHHHHHHHhcCCCCccCcCCCCeEEeCCchhEEEECCHHH-
Confidence            45667788999999999999999998422        1222234455432 2346677999999999999999998877 


Q ss_pred             CCcccccccccC-CCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHH
Q psy14927        440 TDKVLGVHIIGP-GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCED  518 (1074)
Q Consensus       440 ~~~~lg~~~~~~-g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~  518 (1074)
                              ++.. ++++.+.+.++..++++...+.++||+||++|++|++|||+|++|++++|+|+.+++||+.+.|+.+
T Consensus       356 --------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~  427 (446)
T TIGR01424       356 --------AREKFTGDILVYRAGFRPMKNTFSGRQEKTLMKLVVDEKDDKVLGAHMVGPDAAEIIQGIAIALKMGATKAD  427 (446)
T ss_pred             --------HHhhcCCCEEEEEEecCchHhHhhcCCCceEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHH
Confidence                    7776 4889999999999999998999999999999999999999999999999999999999999999999


Q ss_pred             HhhhcccCCcccccc
Q psy14927        519 VARTCHAHPTVCVEK  533 (1074)
Q Consensus       519 l~~~~~~hPt~s~e~  533 (1074)
                      |.+++|+|||++|.+
T Consensus       428 l~~~~~~hPt~~e~~  442 (446)
T TIGR01424       428 FDSTVGIHPSSAEEF  442 (446)
T ss_pred             HhhccccCCChHHHH
Confidence            999999999999765

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR03452 mycothione_red mycothione reductase

Probab=99.60  E-value=1.7e-15  Score=179.91  Aligned_cols=156  Identities=24%  Similarity=0.282  Sum_probs=134.5

Q ss_pred             HhhhhhccccccccccCCceEEeccchhh-----ccHHH---Hhccccccc--cccccccccccccccCCcceEEEEecc
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWTL-----LSLAR---VLEGIEYKV--GKFPFAANSRAKTNNDTDGFVKVLGDK  438 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (1074)
                      +++.+.++.|+++|||+.+||..||..-.     .-..|   |.+++....  ..+++..+|.+++.+++.++|++++.+
T Consensus       279 ~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~i~t~p~ia~vGlte~e  358 (452)
T TIGR03452       279 VDEDGRIKVDEYGRTSARGVWALGDVSSPYQLKHVANAEARVVKHNLLHPNDLRKMPHDFVPSAVFTHPQIATVGLTEQE  358 (452)
T ss_pred             ECCCCcEeeCCCcccCCCCEEEeecccCcccChhHHHHHHHHHHHHhcCCCCcccCCCCCCCeEEECCCCeeeeeCCHHH
Confidence            56677789999999999999999998422     12222   355554332  246677899999999999999998877


Q ss_pred             CCCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHH
Q psy14927        439 LTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCED  518 (1074)
Q Consensus       439 ~~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~  518 (1074)
                               ++..|+++.+...++..+++++.++++.||+||++|++|++|||+|++|++++|+|+.+++||+.+.|+++
T Consensus       359 ---------a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~  429 (452)
T TIGR03452       359 ---------AREAGHDITVKIQNYGDVAYGWAMEDTTGFCKLIADRDTGKLLGAHIIGPQASSLIQPLITAMAFGLDARE  429 (452)
T ss_pred             ---------HHhcCCCeEEEEecCCchhhHhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHH
Confidence                     77789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhh-cccCCcccccc
Q psy14927        519 VART-CHAHPTVCVEK  533 (1074)
Q Consensus       519 l~~~-~~~hPt~s~e~  533 (1074)
                      |..+ +++|||+++.+
T Consensus       430 l~~~~~~~hPt~~e~~  445 (452)
T TIGR03452       430 MARKQYWIHPALPEVV  445 (452)
T ss_pred             HhhCCcccCCchHHHH
Confidence            9986 78999999765

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.60  E-value=1.7e-15  Score=179.86  Aligned_cols=156  Identities=18%  Similarity=0.173  Sum_probs=135.0

Q ss_pred             HhhhhhccccccccccCCceEEeccch-------hhccH-HHHhcccccc-cc-ccccccccccccccCCcceEEEEecc
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKW-------TLLSL-ARVLEGIEYK-VG-KFPFAANSRAKTNNDTDGFVKVLGDK  438 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (1074)
                      +++.+.+..|+++|||..+||..||..       +.+-+ ..|..++... .. ...+..+|.++..+|+.++|++++.+
T Consensus       268 ~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~p~ia~vGlte~~  347 (441)
T PRK08010        268 VNERGAIVVDKYLHTTADNIWAMGDVTGGLQFTYISLDDYRIVRDELLGEGKRSTDDRKNVPYSVFMTPPLSRVGMTEEQ  347 (441)
T ss_pred             ECCCCcEEECCCcccCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcCCCCcccCccCCCCEEEECCCCceeeeCCHHH
Confidence            566777999999999999999999983       22222 2345666532 11 23456889999999999999998887


Q ss_pred             CCCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHH
Q psy14927        439 LTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCED  518 (1074)
Q Consensus       439 ~~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~  518 (1074)
                               ++..|+++.+...++..++|+..++.++||+|+++|++|++|||+|++|++++|+|+.+++||+.+.|+++
T Consensus       348 ---------a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~  418 (441)
T PRK08010        348 ---------ARESGADIQVVTLPVAAIPRARVMNDTRGVLKAIVDNKTQRILGASLLCVDSHEMINIVKMVMDAGLPYSI  418 (441)
T ss_pred             ---------HHHcCCCeEEEEEecCcChhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHH
Confidence                     77889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhcccCCcccccc
Q psy14927        519 VARTCHAHPTVCVEK  533 (1074)
Q Consensus       519 l~~~~~~hPt~s~e~  533 (1074)
                      |..++|+|||+++.+
T Consensus       419 l~~~~~~hPt~~e~~  433 (441)
T PRK08010        419 LRDQIFTHPSMSESL  433 (441)
T ss_pred             HhhccccCCchHHHH
Confidence            999999999999765

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=99.60  E-value=1.9e-15  Score=180.17  Aligned_cols=155  Identities=20%  Similarity=0.235  Sum_probs=133.9

Q ss_pred             HhhhhhccccccccccCCceEEeccchhhccH--------HHHhccccccccccccccccccccccCCcceEEEEeccCC
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWTLLSL--------ARVLEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLT  440 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (1074)
                      +++.+ +..|+++|||..|||..||..-+...        ..|...+..+...+++..+|+.+..+++.+.|++++.+  
T Consensus       282 ~~~~g-i~Vd~~~~ts~~~VyA~GD~~~~~~la~~A~~~g~~aa~~~~g~~~~~~~~~~p~~v~~~p~~a~vGlte~~--  358 (458)
T PRK06912        282 FSNKG-ISVNEHMQTNVPHIYACGDVIGGIQLAHVAFHEGTTAALHASGEDVKVNYHAVPRCIYTSPEIASVGLTEKQ--  358 (458)
T ss_pred             ecCCC-EEeCCCeecCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcCCCCCCCcCCCCeEEecCchhEEeeCCHHH--
Confidence            34556 88899999999999999998644322        22344444333445678899999999999999998887  


Q ss_pred             CcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHHh
Q psy14927        441 DKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVA  520 (1074)
Q Consensus       441 ~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l~  520 (1074)
                             ++..|+++.+...+|..++|++.++.+.||+||++|++|++|||+|++|++++|+|+.+++||+.++|+++|.
T Consensus       359 -------a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~  431 (458)
T PRK06912        359 -------AREQYGDIRIGEFPFTANGKALIIGEQTGKVKVIVEPKYQEIVGISIIGPRATELIGQGTVMIHTEVTADIME  431 (458)
T ss_pred             -------HHHCCCCeEEEEEecCcchhHhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHh
Confidence                   7777889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccCCcccccc
Q psy14927        521 RTCHAHPTVCVEK  533 (1074)
Q Consensus       521 ~~~~~hPt~s~e~  533 (1074)
                      +++++|||+++.+
T Consensus       432 ~~~~~hPt~~e~~  444 (458)
T PRK06912        432 DFIAAHPTLSEAI  444 (458)
T ss_pred             hCcccCCCHHHHH
Confidence            9999999999865

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.60  E-value=2e-15  Score=180.00  Aligned_cols=155  Identities=38%  Similarity=0.543  Sum_probs=132.1

Q ss_pred             HhhhhhccccccccccCCceEEeccchhhc--------cHHHHhccccccccccccccccccccccCCcceEEEEeccCC
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWTLL--------SLARVLEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLT  440 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (1074)
                      +++.+ +..+.++|||+.+||..||..-+.        ....|..+|.......++..+|.++..+|+.+.|++++.+  
T Consensus       290 ~~~~G-~~vd~~~~Ts~~~IyA~GD~~~~~~la~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~t~p~ia~vGlte~~--  366 (466)
T PRK06115        290 TDKRG-MLANDHHRTSVPGVWVIGDVTSGPMLAHKAEDEAVACIERIAGKAGEVNYGLIPGVIYTRPEVATVGKTEEQ--  366 (466)
T ss_pred             eCCCC-EEECCCeecCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEECCcccEEeeCCHHH--
Confidence            44555 556788999999999999985332        1222244554433345567889999999999999998877  


Q ss_pred             CcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHHh
Q psy14927        441 DKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVA  520 (1074)
Q Consensus       441 ~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l~  520 (1074)
                             ++..|+++.+.+++|.+++|+...+.++||+||++|++|++|||+|++|++++|+|+.+++||+.+.|+.+|.
T Consensus       367 -------a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~dl~  439 (466)
T PRK06115        367 -------LKAEGRAYKVGKFPFTANSRAKINHETEGFAKILADARTDEVLGVHMVGPSVSEMIGEFCVAMEFSASAEDIA  439 (466)
T ss_pred             -------HHHCCCCEEEEEEecccChhhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHh
Confidence                   7778999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccCCcccccc
Q psy14927        521 RTCHAHPTVCVEK  533 (1074)
Q Consensus       521 ~~~~~hPt~s~e~  533 (1074)
                      .++|+|||++|.+
T Consensus       440 ~~~~~hPt~~e~~  452 (466)
T PRK06115        440 LTCHPHPTRSEAL  452 (466)
T ss_pred             hCccCCCChHHHH
Confidence            9999999999865

>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ]

Probab=99.59  E-value=1.5e-15  Score=143.71  Aligned_cols=106  Identities=36%  Similarity=0.541  Sum_probs=97.7

Q ss_pred             ccccccccCCcceEEEEeccCCCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCC
Q psy14927        419 NSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPA  498 (1074)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~  498 (1074)
                      +|.++..+++.+.|++++..         ++..|+++++.+.++..+.|+...+++.|++|+++|++|++|||+|++|++
T Consensus         1 vP~~vft~p~ia~vGlte~~---------a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~IlGa~~vg~~   71 (110)
T PF02852_consen    1 VPTVVFTDPEIASVGLTEEE---------ARKQGIDYEVVTVPFKSNDRARYYPETEGFVKLIFDKKTGRILGAQIVGPN   71 (110)
T ss_dssp             CEEEEESSSEEEEEES-HHH---------HHHHTSGEEEEEEEEGGEHHHHHTTTTEEEEEEEEETTTTBEEEEEEEETT
T ss_pred             CCEEEECCCceEEEccCHHH---------HHhccCceeeeeecccccchhcccCCcceeeEEEEEeeccceeeeeeecCc
Confidence            46677777888888877777         888899999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHcCCCHHHHhhhcccCCcccccc
Q psy14927        499 AGELINEAVLAMEYGASCEDVARTCHAHPTVCVEK  533 (1074)
Q Consensus       499 a~eli~~~a~a~~~~~~~~~l~~~~~~hPt~s~e~  533 (1074)
                      ++|+|+.++++++.+.|++++...+++|||+++.+
T Consensus        72 a~e~I~~~~~ai~~~~t~~~l~~~~~~~Pt~se~~  106 (110)
T PF02852_consen   72 ASELINELALAIQNGLTVEDLADDIFYHPTFSEAI  106 (110)
T ss_dssp             HHHHHHHHHHHHHTTSBHHHHHTSBSSSTSTGHHH
T ss_pred             hHHHHHHHHHHHHcCCCHHHHhCCeeeCCChhHHH
Confidence            99999999999999999999999999999999875

; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....

>PRK07846 mycothione reductase; Reviewed

Probab=99.59  E-value=2.4e-15  Score=178.42  Aligned_cols=157  Identities=22%  Similarity=0.248  Sum_probs=134.6

Q ss_pred             HHhhhhhccccccccccCCceEEeccchhh--------ccHHHHhcccccc--ccccccccccccccccCCcceEEEEec
Q psy14927        368 EVDKYLEMKRNQSFRSSNTDIILPVEKWTL--------LSLARVLEGIEYK--VGKFPFAANSRAKTNNDTDGFVKVLGD  437 (1074)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (1074)
                      ++++.+.+..|+++|||+.+||..||..-+        .....|..++...  ....++..+|.++..+++.+.|++++.
T Consensus       275 ~~~~~G~i~Vd~~~~Ts~p~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~if~~p~ia~vGlte~  354 (451)
T PRK07846        275 DVDEDGRVVVDEYQRTSAEGVFALGDVSSPYQLKHVANHEARVVQHNLLHPDDLIASDHRFVPAAVFTHPQIASVGLTEN  354 (451)
T ss_pred             eECCCCcEeECCCcccCCCCEEEEeecCCCccChhHHHHHHHHHHHHHcCCCCccccCCCCCCeEEECCCCcEeEeCCHH
Confidence            356778899999999999999999998422        1222235555432  224567789999999999999999887


Q ss_pred             cCCCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHH
Q psy14927        438 KLTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCE  517 (1074)
Q Consensus       438 ~~~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~  517 (1074)
                      +         ++..|+++.+...++..++++...+.++||+||++|++|++|||+|++|++++|+|+.+++||+.+.|++
T Consensus       355 ~---------a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~  425 (451)
T PRK07846        355 E---------ARAAGLDITVKVQNYGDVAYGWAMEDTTGFVKLIADRDTGRLLGAHIIGPQASTLIQPLIQAMSFGLDAR  425 (451)
T ss_pred             H---------HHhcCCCEEEEEEecCcchhhhhCCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHH
Confidence            7         7788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhc-ccCCcccccc
Q psy14927        518 DVARTC-HAHPTVCVEK  533 (1074)
Q Consensus       518 ~l~~~~-~~hPt~s~e~  533 (1074)
                      +|..++ ++|||+++.+
T Consensus       426 ~l~~~~~~~hPt~~e~~  442 (451)
T PRK07846        426 EMARGQYWIHPALPEVV  442 (451)
T ss_pred             HHhhCCCccCCcHHHHH
Confidence            999875 7999999765

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=99.59  E-value=2.3e-15  Score=178.57  Aligned_cols=156  Identities=18%  Similarity=0.191  Sum_probs=131.1

Q ss_pred             HhhhhhccccccccccCCceEEeccch--------hhccHHHHhccccccc--cccccccccccccccCCcceEEEEecc
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKW--------TLLSLARVLEGIEYKV--GKFPFAANSRAKTNNDTDGFVKVLGDK  438 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (1074)
                      +++.+.+..|++++|++.+||..||..        +......|.+++....  ..+.+..+|.+++.+|+.++|++++.+
T Consensus       279 ~~~~G~i~vd~~~~T~~p~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~f~~p~ia~vGlte~~  358 (450)
T TIGR01421       279 LNEKGQIIVDEYQNTNVPGIYALGDVVGKVELTPVAIAAGRKLSERLFNGKTDDKLDYNNVPTVVFSHPPIGTIGLTEKE  358 (450)
T ss_pred             ECCCCcEEeCCCCcCCCCCEEEEEecCCCcccHHHHHHHHHHHHHHHhcCCCCCccCcccCCeEEeCCCceEEEeCCHHH
Confidence            566677889999999999999999963        2222233344444222  234567899999999999999998876


Q ss_pred             CCCcccccccccC-CC-cEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCH
Q psy14927        439 LTDKVLGVHIIGP-GI-EYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASC  516 (1074)
Q Consensus       439 ~~~~~lg~~~~~~-g~-~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~  516 (1074)
                               ++.. |. .+.+...++..+.+++..+.+.||+|++++++|++|||+|++|++|+|+|+.+++||+.+.|+
T Consensus       359 ---------a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~  429 (450)
T TIGR01421       359 ---------AIEKYGKENIKVYNSSFTPMYYAMTSEKQKCRMKLVCAGKEEKVVGLHGIGDGVDEMLQGFAVAIKMGATK  429 (450)
T ss_pred             ---------HHhhcCCCCEEEEEEEcChhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCH
Confidence                     5544 54 488889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcccCCcccccc
Q psy14927        517 EDVARTCHAHPTVCVEK  533 (1074)
Q Consensus       517 ~~l~~~~~~hPt~s~e~  533 (1074)
                      ++|.+++|+|||++|.+
T Consensus       430 ~~l~~~~~~hPt~~e~~  446 (450)
T TIGR01421       430 ADFDNTVAIHPTSSEEL  446 (450)
T ss_pred             HHHhhcccCCCChHHHH
Confidence            99999999999999865

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=99.59  E-value=2.9e-15  Score=178.72  Aligned_cols=156  Identities=21%  Similarity=0.180  Sum_probs=132.5

Q ss_pred             HhhhhhccccccccccCCceEEeccchhhc--------cHHHHhccccccc-cccccccccccccccCCcceEEEEeccC
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWTLL--------SLARVLEGIEYKV-GKFPFAANSRAKTNNDTDGFVKVLGDKL  439 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (1074)
                      +++.+.++.|+++|||+.+||..||..-++        ....|..++.... ..+.+..+|..+..+++.++|++++.. 
T Consensus       288 ~~~~G~i~Vd~~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~vf~~p~~a~vGlte~~-  366 (466)
T PRK07845        288 LTPSGHITVDRVSRTSVPGIYAAGDCTGVLPLASVAAMQGRIAMYHALGEAVSPLRLKTVASNVFTRPEIATVGVSQAA-  366 (466)
T ss_pred             ECCCCcEeECCCcccCCCCEEEEeeccCCccchhHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEeCCCcceeecCCHHH-
Confidence            566777899999999999999999985332        2222233333221 223456889999999999999998876 


Q ss_pred             CCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHH
Q psy14927        440 TDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDV  519 (1074)
Q Consensus       440 ~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l  519 (1074)
                              ++..|+++.+...++..++|+...+.++||+|+++|++|++|||+|++|++++|+|+.+++||+.+.|+++|
T Consensus       367 --------a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l  438 (466)
T PRK07845        367 --------IDSGEVPARTVMLPLATNPRAKMSGLRDGFVKLFCRPGTGVVIGGVVVAPRASELILPIALAVQNRLTVDDL  438 (466)
T ss_pred             --------HHhCCCceEEEEEecccCchhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHH
Confidence                    777789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcccCCcccccc
Q psy14927        520 ARTCHAHPTVCVEK  533 (1074)
Q Consensus       520 ~~~~~~hPt~s~e~  533 (1074)
                      .+++|+|||+++.+
T Consensus       439 ~~~~~~hPt~~e~~  452 (466)
T PRK07845        439 AQTFTVYPSLSGSI  452 (466)
T ss_pred             hcCcCCCCCHHHHH
Confidence            99999999999754

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=99.59  E-value=3e-15  Score=178.98  Aligned_cols=157  Identities=28%  Similarity=0.355  Sum_probs=134.5

Q ss_pred             HhhhhhccccccccccCCceEEeccchhhc--------cHHHHhccccc-cccccccccccccccccCCcceEEEEeccC
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWTLL--------SLARVLEGIEY-KVGKFPFAANSRAKTNNDTDGFVKVLGDKL  439 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (1074)
                      +++.+.+..|+++|||+.+||..||...+.        ....|..++.. ....+.+..+|..+..+++.+.|++++.. 
T Consensus       282 ~~~~g~i~vd~~~~ts~~~IyA~GD~~~~~~~~~~A~~qg~~aa~~i~~~~~~~~~~~~~p~~~~~~~~~a~vG~te~~-  360 (460)
T PRK06292        282 LDERGRPVVDEHTQTSVPGIYAAGDVNGKPPLLHEAADEGRIAAENAAGDVAGGVRYHPIPSVVFTDPQIASVGLTEEE-  360 (460)
T ss_pred             ecCCCcEeECCCcccCCCCEEEEEecCCCccchhHHHHHHHHHHHHhcCCCCCCcCCCCCCeEEECCCccEEeECCHHH-
Confidence            556777889999999999999999984321        12223444443 23334566788899999999999998777 


Q ss_pred             CCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHH
Q psy14927        440 TDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDV  519 (1074)
Q Consensus       440 ~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l  519 (1074)
                              +++.|+++.+...+++.++|+...+.+.||+|+++|++|++|||+|++|++++|+|+.+++||+.+.|+++|
T Consensus       361 --------a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l  432 (460)
T PRK06292        361 --------LKAAGIDYVVGEVPFEAQGRARVMGKNDGFVKVYADKKTGRLLGAHIIGPDAEHLIHLLAWAMQQGLTVEDL  432 (460)
T ss_pred             --------HHhcCCCeEEEEEecccchHHHhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHH
Confidence                    777899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcccCCccccccc
Q psy14927        520 ARTCHAHPTVCVEKN  534 (1074)
Q Consensus       520 ~~~~~~hPt~s~e~~  534 (1074)
                      .+++|+|||+++.+.
T Consensus       433 ~~~~~~hPt~~e~~~  447 (460)
T PRK06292        433 LRMPFYHPTLSEGLR  447 (460)
T ss_pred             hhCccCCCCHHHHHH
Confidence            999999999998763

>PRK06116 glutathione reductase; Validated

Probab=99.59  E-value=2.9e-15  Score=178.45  Aligned_cols=156  Identities=20%  Similarity=0.157  Sum_probs=132.5

Q ss_pred             HhhhhhccccccccccCCceEEeccchhhc--c------HHHHhccccccc--cccccccccccccccCCcceEEEEecc
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWTLL--S------LARVLEGIEYKV--GKFPFAANSRAKTNNDTDGFVKVLGDK  438 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (1074)
                      +++.+.++.|+.+|||+.+||..||..-+.  +      ...|+.++....  ....+..+|..+...|+.++|++++.+
T Consensus       279 ~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~if~~p~~a~vGlte~~  358 (450)
T PRK06116        279 LNEKGYIIVDEYQNTNVPGIYAVGDVTGRVELTPVAIAAGRRLSERLFNNKPDEKLDYSNIPTVVFSHPPIGTVGLTEEE  358 (450)
T ss_pred             ECCCCcEecCCCCCcCCCCEEEEeecCCCcCcHHHHHHHHHHHHHHHhCCCCCCcCCcCCCCeEEeCCCccEEeeCCHHH
Confidence            567777999999999999999999984221  1      112234443321  233557899999999999999998877


Q ss_pred             CCCcccccccccCCCc--EEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCH
Q psy14927        439 LTDKVLGVHIIGPGIE--YKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASC  516 (1074)
Q Consensus       439 ~~~~~lg~~~~~~g~~--~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~  516 (1074)
                               +++.|.+  +.+...++..+.+++..+.++||+|+++|++|++|||+|++|++++|+|+.+++||+.+.|+
T Consensus       359 ---------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~  429 (450)
T PRK06116        359 ---------AREQYGEDNVKVYRSSFTPMYTALTGHRQPCLMKLVVVGKEEKVVGLHGIGFGADEMIQGFAVAIKMGATK  429 (450)
T ss_pred             ---------HHHhCCCCcEEEEEEecchhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCH
Confidence                     7777766  89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcccCCcccccc
Q psy14927        517 EDVARTCHAHPTVCVEK  533 (1074)
Q Consensus       517 ~~l~~~~~~hPt~s~e~  533 (1074)
                      ++|.+++|+|||++|..
T Consensus       430 ~~l~~~~~~hPt~~e~~  446 (450)
T PRK06116        430 ADFDNTVAIHPTAAEEF  446 (450)
T ss_pred             HHHhcccccCCChHHHH
Confidence            99999999999999765

>TIGR02053 MerA mercuric reductase

Probab=99.58  E-value=3.2e-15  Score=178.77  Aligned_cols=156  Identities=27%  Similarity=0.340  Sum_probs=136.4

Q ss_pred             HhhhhhccccccccccCCceEEeccchhh--------ccHHHHhcccccc-ccccccccccccccccCCcceEEEEeccC
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWTL--------LSLARVLEGIEYK-VGKFPFAANSRAKTNNDTDGFVKVLGDKL  439 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (1074)
                      +++.+.++.|+++|||..+||..||...+        .....|..++... ...++...+|.++..+++.+.|++++.. 
T Consensus       280 ~~~~G~i~vd~~~~Ts~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~-  358 (463)
T TIGR02053       280 LDERGGILVDETLRTSNPGIYAAGDVTGGLQLEYVAAKEGVVAAENALGGANAKLDLLVIPRVVFTDPAVASVGLTEAE-  358 (463)
T ss_pred             ECCCCcEeECCCccCCCCCEEEeeecCCCcccHhHHHHHHHHHHHHhcCCCCCccCcCCCCeEEeccCceEEEeCCHHH-
Confidence            56677789999999999999999997432        2233345555543 4567778899999999999999998877 


Q ss_pred             CCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHH
Q psy14927        440 TDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDV  519 (1074)
Q Consensus       440 ~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l  519 (1074)
                              ++..|+++.+...++..++|+...+.+.||+|+++|++|++|||+|++|++++|+|+.+++|++.+.|+.+|
T Consensus       359 --------a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l  430 (463)
T TIGR02053       359 --------AQKAGIECDCRTLPLTNVPRARINRDTRGFIKLVAEPGTGKVLGVQVVAPEAAEVINEAALAIRAGMTVDDL  430 (463)
T ss_pred             --------HHhcCCCeEEEEEecccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHH
Confidence                    777899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcccCCcccccc
Q psy14927        520 ARTCHAHPTVCVEK  533 (1074)
Q Consensus       520 ~~~~~~hPt~s~e~  533 (1074)
                      .++++||||+++.+
T Consensus       431 ~~~~~~~pt~~e~~  444 (463)
T TIGR02053       431 IDTLHPFPTMAEGL  444 (463)
T ss_pred             hhCcccCCChHHHH
Confidence            99999999999765

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PLN02546 glutathione reductase

Probab=99.57  E-value=4e-15  Score=179.05  Aligned_cols=160  Identities=21%  Similarity=0.146  Sum_probs=134.7

Q ss_pred             HhhhhhccccccccccCCceEEeccchhhc--------cHHHHhccccccc-cccccccccccccccCCcceEEEEeccC
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWTLL--------SLARVLEGIEYKV-GKFPFAANSRAKTNNDTDGFVKVLGDKL  439 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (1074)
                      +++.+.+..|+++|||+.+||..||..-+.        ....+..++.... ....+..+|.+++.+|+.++|++++.. 
T Consensus       364 ~d~~G~I~VD~~l~Ts~p~IYAaGDv~~~~~l~~~A~~~g~~~a~~i~g~~~~~~~~~~vp~~vft~Peia~VGlte~e-  442 (558)
T PLN02546        364 MDKNGAIEVDEYSRTSVPSIWAVGDVTDRINLTPVALMEGGALAKTLFGNEPTKPDYRAVPSAVFSQPPIGQVGLTEEQ-  442 (558)
T ss_pred             CCCCCcEeECCCceeCCCCEEEeeccCCCcccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEeCCchHhhccCCHHH-
Confidence            567778999999999999999999994322        1222344443321 123467889999999999999998887 


Q ss_pred             CCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHH
Q psy14927        440 TDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDV  519 (1074)
Q Consensus       440 ~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l  519 (1074)
                              ++..|+++.+.+.+|..+.+++..+.+.||+||+++++|++|||+|++|++++|+|+.+++||+.++|+++|
T Consensus       443 --------A~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ILGa~ivG~~a~elI~~~a~ai~~~~t~~dl  514 (558)
T PLN02546        443 --------AIEEYGDVDVFTANFRPLKATLSGLPDRVFMKLIVCAKTNKVLGVHMCGEDAPEIIQGFAVAVKAGLTKADF  514 (558)
T ss_pred             --------HHHcCCCeEEEEEecccchhhhhCCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHH
Confidence                    777888899999999999988877788999999999999999999999999999999999999999999999


Q ss_pred             hhhcccCCcccccccccc
Q psy14927        520 ARTCHAHPTVCVEKNDTL  537 (1074)
Q Consensus       520 ~~~~~~hPt~s~e~~~~~  537 (1074)
                      .+++|+|||+++.+....
T Consensus       515 ~~~~~~hPT~~E~~~~~~  532 (558)
T PLN02546        515 DATVGIHPTAAEEFVTMR  532 (558)
T ss_pred             hhcccCCCChHHHHHHHh
Confidence            999999999998874443

>KOG1346|consensus

Probab=99.56  E-value=6e-15  Score=159.23  Aligned_cols=208  Identities=23%  Similarity=0.257  Sum_probs=158.4

Q ss_pred             hCCeEEEee-eEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCc-------ceechhhHhcchH----
Q psy14927        854 SNKVTQLNG-HGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEE-------TIVSSTGALSLKK----  921 (1074)
Q Consensus       854 ~~gV~~~~g-~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~-------~v~t~~~~~~~~~----  921 (1074)
                      +-||-+..| .|+.+|.....|++.||  .+|.||.++||||.+|..++-++....       .+.+..||..+.+    
T Consensus       269 nGGvAvl~G~kvvkid~~d~~V~LnDG--~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p~DF~rlek~~ae  346 (659)
T KOG1346|consen  269 NGGVAVLRGRKVVKIDEEDKKVILNDG--TTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYPADFKRLEKGLAE  346 (659)
T ss_pred             cCceEEEeccceEEeecccCeEEecCC--cEeehhheeeecCcCcccchhhhhcCHHhhhheeEEecchHHHHHHHhhhh
Confidence            348999999 69999999999999999  899999999999999977665543222       1225666666555    


Q ss_pred             ----------------hhHH----hhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeE
Q psy14927        922 ----------------GSVW----GRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNI  981 (1074)
Q Consensus       922 ----------------A~~l----~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~  981 (1074)
                                      |..|    +..|.+|+-+......+..-++.-+++.-.+.+++.||.++.+..|.++......+
T Consensus       347 k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl  426 (659)
T KOG1346|consen  347 KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNL  426 (659)
T ss_pred             cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccce
Confidence                            2223    33577777554443333233455566667788999999999999999988776667


Q ss_pred             EEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCC-CCeeeCCCCCCCCCCEEEecccCCCC-------
Q psy14927        982 TVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEK-GRVPVNSRFQTVIPNIFAIGDCIHGP------- 1053 (1074)
Q Consensus       982 ~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~-G~I~Vd~~~~ts~~~IyAiGD~~~~~------- 1053 (1074)
                      .+.+.|      +.++..|+|++|+|-.||+++  ....|+++|++ |.+.||..++.. .|||++||++...       
T Consensus       427 ~lkL~d------G~~l~tD~vVvavG~ePN~el--a~~sgLeiD~~lGGfrvnaeL~ar-~NvwvAGdaacF~D~~LGrR  497 (659)
T KOG1346|consen  427 VLKLSD------GSELRTDLVVVAVGEEPNSEL--AEASGLEIDEKLGGFRVNAELKAR-ENVWVAGDAACFEDGVLGRR  497 (659)
T ss_pred             EEEecC------CCeeeeeeEEEEecCCCchhh--cccccceeecccCcEEeeheeecc-cceeeecchhhhhcccccce
Confidence            888877      679999999999999999998  67888998875 778899877754 6899999988631       


Q ss_pred             --CcHHHHHHHHHHHHHHhhC
Q psy14927       1054 --MLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus      1054 --~~~~~A~~~G~~aA~~I~~ 1072 (1074)
                        .....|.-.|+.|+.|+.|
T Consensus       498 RVehhdhavvSGRLAGENMtg  518 (659)
T KOG1346|consen  498 RVEHHDHAVVSGRLAGENMTG  518 (659)
T ss_pred             eccccccceeeceeccccccc
Confidence              1244678889999998875

>PRK13748 putative mercuric reductase; Provisional

Probab=99.56  E-value=6.5e-15  Score=180.52  Aligned_cols=156  Identities=21%  Similarity=0.208  Sum_probs=136.5

Q ss_pred             HhhhhhccccccccccCCceEEeccchhh--------ccHHHHhccccccccccccccccccccccCCcceEEEEeccCC
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWTL--------LSLARVLEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLT  440 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (1074)
                      +++++.+..|+++|||..|||..||..-+        .....|..++......++...+|.++..+++.++|++++..  
T Consensus       379 ~~~~g~i~vd~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~p~~a~vGlte~~--  456 (561)
T PRK13748        379 VNAQGAIVIDQGMRTSVPHIYAAGDCTDQPQFVYVAAAAGTRAAINMTGGDAALDLTAMPAVVFTDPQVATVGYSEAE--  456 (561)
T ss_pred             ECCCCCEeECCCcccCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcCCCcccCCCCCCeEEEccCCceeeeCCHHH--
Confidence            56677799999999999999999998322        22233355555444567788899999999999999998777  


Q ss_pred             CcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHHh
Q psy14927        441 DKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVA  520 (1074)
Q Consensus       441 ~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l~  520 (1074)
                             ++..|+++.+..+++..++++...+.++||+||++|++|++|||+|++|++++|+|+.+++|++.+.|+.+|.
T Consensus       457 -------a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~  529 (561)
T PRK13748        457 -------AHHDGIETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSGRLIGVQAVAPEAGELIQTAALAIRNRMTVQELA  529 (561)
T ss_pred             -------HHHcCCCeEEEEEecccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHh
Confidence                   7778999999999999999999988899999999999999999999999999999999999999999999999


Q ss_pred             hhcccCCcccccc
Q psy14927        521 RTCHAHPTVCVEK  533 (1074)
Q Consensus       521 ~~~~~hPt~s~e~  533 (1074)
                      .++|+|||++|.+
T Consensus       530 ~~~~~~Pt~~e~~  542 (561)
T PRK13748        530 DQLFPYLTMVEGL  542 (561)
T ss_pred             cccccCCchHHHH
Confidence            9999999999765

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.56  E-value=6.5e-15  Score=174.83  Aligned_cols=157  Identities=20%  Similarity=0.189  Sum_probs=131.5

Q ss_pred             HhhhhhccccccccccCCceEEeccch-------hhccHHH-Hhcccccccc--ccccccccccccccCCcceEEEEecc
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKW-------TLLSLAR-VLEGIEYKVG--KFPFAANSRAKTNNDTDGFVKVLGDK  438 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (1074)
                      +++.+.++.|+++||+..+||..||..       +++-+.. |...+.....  ..+...+|..++.+++.+++++++.+
T Consensus       267 ~~~~g~i~vd~~~~t~~~~IyaiGD~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~ia~vGlte~~  346 (438)
T PRK07251        267 LTERGAIKVDDYCQTSVPGVFAVGDVNGGPQFTYISLDDFRIVFGYLTGDGSYTLEDRGNVPTTMFITPPLSQVGLTEKE  346 (438)
T ss_pred             ECCCCcEEECCCcccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcCCCCccccccCCCCEEEECCCceEeeeCCHHH
Confidence            456677889999999999999999963       2222222 2332322211  23445788889999999999997777


Q ss_pred             CCCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHH
Q psy14927        439 LTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCED  518 (1074)
Q Consensus       439 ~~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~  518 (1074)
                               ++..|+++.+.+.++..++++...++++|++||++|++|++|||+|++|++++|+|+.+++||+.+.|+++
T Consensus       347 ---------a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~  417 (438)
T PRK07251        347 ---------AKEAGLPYAVKELLVAAMPRAHVNNDLRGAFKVVVNTETKEILGATLFGEGSQEIINLITMAMDNKIPYTY  417 (438)
T ss_pred             ---------HHhcCCCeEEEEEECCcchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHH
Confidence                     77889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhcccCCccccccc
Q psy14927        519 VARTCHAHPTVCVEKN  534 (1074)
Q Consensus       519 l~~~~~~hPt~s~e~~  534 (1074)
                      |.+++|+|||++|.+.
T Consensus       418 l~~~~~~hPt~~e~~~  433 (438)
T PRK07251        418 FKKQIFTHPTMAENLN  433 (438)
T ss_pred             HhcccccCCChHHHHH
Confidence            9999999999998763

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=99.54  E-value=1.4e-14  Score=173.44  Aligned_cols=153  Identities=33%  Similarity=0.389  Sum_probs=131.7

Q ss_pred             hhhccccccccccCCceEEeccchhhcc--------HHHHhccccccc-cccccccccccccccCCcceEEEEeccCCCc
Q psy14927        372 YLEMKRNQSFRSSNTDIILPVEKWTLLS--------LARVLEGIEYKV-GKFPFAANSRAKTNNDTDGFVKVLGDKLTDK  442 (1074)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (1074)
                      .+.+..+++++|+..+||..||...+..        ...|...+.... ..++....|.+++.+++.+.+++++..    
T Consensus       297 ~g~i~Vd~~l~ts~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vG~te~~----  372 (472)
T PRK05976        297 GGFIQIDDFCQTKERHIYAIGDVIGEPQLAHVAMAEGEMAAEHIAGKKPRPFDYAAIPACCYTDPEVASVGLTEEE----  372 (472)
T ss_pred             CCEEEECCCcccCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCEEEECcCceEEEeCCHHH----
Confidence            4557888999999999999999954431        122333443332 445666788999999999999998877    


Q ss_pred             ccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHHhhh
Q psy14927        443 VLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVART  522 (1074)
Q Consensus       443 ~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l~~~  522 (1074)
                           ++..|+++.+...+|..++|+..++.++||+|+++|++|++|||+|++|++++|+|+.+++||+.++|+++|.++
T Consensus       373 -----a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~  447 (472)
T PRK05976        373 -----AKEAGYDVKVGKFPFAANGKALTYGESDGFVKVVADRDTHDILGVQAVGPHVTELISEFALALELGARLWEVAGT  447 (472)
T ss_pred             -----HHHcCCCEEEEEEECCcchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhC
Confidence                 778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCcccccc
Q psy14927        523 CHAHPTVCVEK  533 (1074)
Q Consensus       523 ~~~hPt~s~e~  533 (1074)
                      +|+|||+++.+
T Consensus       448 ~~~hPt~~e~~  458 (472)
T PRK05976        448 IHPHPTLSEAI  458 (472)
T ss_pred             cccCCChHHHH
Confidence            99999999865

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=99.54  E-value=1.4e-14  Score=172.62  Aligned_cols=158  Identities=16%  Similarity=0.152  Sum_probs=127.7

Q ss_pred             HHhhhhhccccccccccCCceEEeccchhh-----ccH---HHHhccccccc-cccccccccccccccCCcceEEEEecc
Q psy14927        368 EVDKYLEMKRNQSFRSSNTDIILPVEKWTL-----LSL---ARVLEGIEYKV-GKFPFAANSRAKTNNDTDGFVKVLGDK  438 (1074)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (1074)
                      ++++.+.++.|+.+|||+.|||..||..-+     +..   ..|..++.... ..+....+|.+++..|+.++|++++.+
T Consensus       301 ~~~~~G~I~Vd~~l~Ts~~~IyA~GDv~~~~~l~~~A~~qG~~aa~ni~g~~~~~~~~~~vp~~vft~peia~vGlte~e  380 (486)
T TIGR01423       301 ELTKKGAIQVDEFSRTNVPNIYAIGDVTDRVMLTPVAINEGAAFVDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLVEED  380 (486)
T ss_pred             eECCCCCEecCCCCcCCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhCCCCcccCCCCCCEEEeCCCceEEeeCCHHH
Confidence            356778899999999999999999998322     112   22344444322 234556799999999999999998877


Q ss_pred             CCCcccccccccCCCcEEEEeeccCccchhhhcCC-CcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHH
Q psy14927        439 LTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNND-TDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCE  517 (1074)
Q Consensus       439 ~~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~-~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~  517 (1074)
                               ++..+.++.+...++..+.++..... ..||+||++|++|++|||+|++|++++|+|+.+++||+.++|+.
T Consensus       381 ---------A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~~~~iLGa~ivg~~a~elI~~~~~ai~~~~t~~  451 (486)
T TIGR01423       381 ---------AAKKFEKVAVYESSFTPLMHNISGSKYKKFVAKIVTNHADGTVLGVHLLGDSSPEIIQAVGICLKLNAKIS  451 (486)
T ss_pred             ---------HHhcCCceEEEEEeeCchhhhhccCccCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHH
Confidence                     55556677888888887777655222 37999999999999999999999999999999999999999999


Q ss_pred             HHhhhcccCCccccccc
Q psy14927        518 DVARTCHAHPTVCVEKN  534 (1074)
Q Consensus       518 ~l~~~~~~hPt~s~e~~  534 (1074)
                      +|.+++|+|||++|.+.
T Consensus       452 dl~~~~~~hPt~sE~~~  468 (486)
T TIGR01423       452 DFYNTIGVHPTSAEELC  468 (486)
T ss_pred             HHhhcccCCCCcHHHHH
Confidence            99999999999998763

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>KOG2041|consensus

Probab=99.53  E-value=4.4e-13  Score=152.01  Aligned_cols=237  Identities=16%  Similarity=0.153  Sum_probs=197.0

Q ss_pred             HHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhh----------------------------------
Q psy14927         37 TDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSM----------------------------------   82 (1074)
Q Consensus        37 ~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~----------------------------------   82 (1074)
                      ...+.+|+..+.+|.||+.+|.++...-.++.|+.+|.++|||..+                                  
T Consensus       679 ledA~qfiEdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yl  758 (1189)
T KOG2041|consen  679 LEDAIQFIEDNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYL  758 (1189)
T ss_pred             hHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhh
Confidence            3577889999999999999999999999999999999999999654                                  


Q ss_pred             --------hhHhhccCCHHHHHHHHHhcCC--h-----HHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCch
Q psy14927         83 --------VRVLCFLQDFSRAAELANASGD--T-----AAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALD  147 (1074)
Q Consensus        83 --------vr~l~~~~~~~~a~~i~~~~~~--~-----~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~  147 (1074)
                              |.+...+|||-+..++.|.-++  +     .+...+|.+|.+.-.|++|.++|..+|.-+.-++.--..++.
T Consensus       759 d~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f  838 (1189)
T KOG2041|consen  759 DADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELF  838 (1189)
T ss_pred             ccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhh
Confidence                    4445567777777777774221  1     356689999999999999999999999999999988888899


Q ss_pred             HHHHHHhhhcCc--hhHHHHHHHHccCC-hhHHHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHH
Q psy14927        148 DQLWNLALSAGP--SEQIEAATYLETIE-PDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKII  224 (1074)
Q Consensus       148 ~~~~~l~~~~~~--~~~~~~A~~~e~~~-~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i  224 (1074)
                      +++..++...+.  +.+...|+.|.+.+ -++||+.|.|++.+.+|+..|..                    ..+|.+++
T Consensus       839 ~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~--------------------LnQW~~av  898 (1189)
T KOG2041|consen  839 GELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKAAVHTCVE--------------------LNQWGEAV  898 (1189)
T ss_pred             hhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcHHHHHHHHH--------------------HHHHHHHH
Confidence            999888866554  66777999999955 59999999999999999999999                    67899999


Q ss_pred             HhhhhcchHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHhHHHHhhcCHHHHHHHH
Q psy14927        225 FFAGVSRMKEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGAL  296 (1074)
Q Consensus       225 ~~a~~~r~~~l~~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~a~~ei~e~~~y~~a~~~l  296 (1074)
                      ++|.....+++-.+.|.|--.+..++   .....++.|+|++.+-.||+....+|..|-+-+--|..-.+.+
T Consensus       899 elaq~~~l~qv~tliak~aaqll~~~---~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklY  967 (1189)
T KOG2041|consen  899 ELAQRFQLPQVQTLIAKQAAQLLADA---NHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLY  967 (1189)
T ss_pred             HHHHhccchhHHHHHHHHHHHHHhhc---chHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHH
Confidence            99999999999998777665542222   2345688999999999999999999999955566676654443

>PLN02507 glutathione reductase

Probab=99.53  E-value=1.7e-14  Score=173.01  Aligned_cols=158  Identities=18%  Similarity=0.133  Sum_probs=131.5

Q ss_pred             HhhhhhccccccccccCCceEEeccchhhc--------cHHHHhccccccccc-cccccccccccccCCcceEEEEeccC
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWTLL--------SLARVLEGIEYKVGK-FPFAANSRAKTNNDTDGFVKVLGDKL  439 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (1074)
                      +++.+.++.|+++||+..|||..||..-+.        ....|..++...... ..+..+|..+...|+.++|++++.+ 
T Consensus       314 ~~~~G~I~Vd~~~~Ts~p~IyAiGDv~~~~~l~~~A~~qg~~aa~ni~g~~~~~~~~~~~p~~if~~p~ia~vGlte~e-  392 (499)
T PLN02507        314 LDKAGAVKVDEYSRTNIPSIWAIGDVTNRINLTPVALMEGTCFAKTVFGGQPTKPDYENVACAVFCIPPLSVVGLSEEE-  392 (499)
T ss_pred             ECCCCcEecCCCCcCCCCCEEEeeEcCCCCccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCeEEECCCccEEEeCCHHH-
Confidence            567777999999999999999999984322        122224444332222 2356779999999999999998887 


Q ss_pred             CCcccccccccC-CCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHH
Q psy14927        440 TDKVLGVHIIGP-GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCED  518 (1074)
Q Consensus       440 ~~~~lg~~~~~~-g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~  518 (1074)
                              ++.. +.++.+...++..++++...+.+.||+||++|++|++|||+|++|++++|+|+.+++||+.+.|+++
T Consensus       393 --------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~  464 (499)
T PLN02507        393 --------AVEQAKGDILVFTSSFNPMKNTISGRQEKTVMKLIVDAETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQ  464 (499)
T ss_pred             --------HHhccCCCEEEEEeecCccccccccCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHH
Confidence                    6655 5778899999999999888778899999999999999999999999999999999999999999999


Q ss_pred             HhhhcccCCcccccccc
Q psy14927        519 VARTCHAHPTVCVEKND  535 (1074)
Q Consensus       519 l~~~~~~hPt~s~e~~~  535 (1074)
                      |.+++|+|||++|....
T Consensus       465 l~~~~~~hPt~~E~~~~  481 (499)
T PLN02507        465 FDSTVGIHPSAAEEFVT  481 (499)
T ss_pred             HhhcCcCCCChHHHHHH
Confidence            99999999999987643

>KOG3617|consensus

Probab=99.53  E-value=1.8e-12  Score=149.51  Aligned_cols=279  Identities=19%  Similarity=0.226  Sum_probs=211.0

Q ss_pred             hcCCHHHHHHHHHHcCcccchhhhHhh--hcHHHHHHHhhcC---CChHHHHHHHHHHHhccCHHHHHHHHHHhhCh-hh
Q psy14927          8 KNGDIDRAIRMFEKAETHQQHVPRMLL--ENTDKLEKYIIQS---KDPVLLKWWAQYIESTEDMDLAMKYYEEARDY-LS   81 (1074)
Q Consensus         8 ~~g~~~eA~~~Ye~~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~-~~   81 (1074)
                      +.|-++||..+|.++.++| =.-.+|-  ++|+.+.++-...   .-+.-+-+||+++|++++.+.|+++|++++.. .+
T Consensus       812 eLgMlEeA~~lYr~ckR~D-LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafe  890 (1416)
T KOG3617|consen  812 ELGMLEEALILYRQCKRYD-LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFE  890 (1416)
T ss_pred             HHhhHHHHHHHHHHHHHHH-HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHH
Confidence            4689999999999999998 3334442  5898877776653   34556778899999999999999999999986 45


Q ss_pred             hhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchh
Q psy14927         82 MVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSE  161 (1074)
Q Consensus        82 ~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~  161 (1074)
                      +-|+|.  .+|..-...++.+++.....--|.|+|.+|+.+.|+.||-.|..|=.-+++--=.|..+....+|.+++...
T Consensus       891 v~rmL~--e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~A  968 (1416)
T KOG3617|consen  891 VFRMLK--EYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKA  968 (1416)
T ss_pred             HHHHHH--hChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHH
Confidence            566653  356667788999999999999999999999999999999999988777766666778888888887766643


Q ss_pred             H-HHHHHHHcc-CChhHHHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHH
Q psy14927        162 Q-IEAATYLET-IEPDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMA  239 (1074)
Q Consensus       162 ~-~~~A~~~e~-~~~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~a  239 (1074)
                      . .-+|+.||+ +++.+||++|-+|--++-|+++|-...                    -.+....++-.++..++ +-|
T Consensus       969 AcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd--------------------~~d~L~nlal~s~~~d~-v~a 1027 (1416)
T KOG3617|consen  969 ACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEND--------------------MKDRLANLALMSGGSDL-VSA 1027 (1416)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------------HHHHHHHHHhhcCchhH-HHH
Confidence            2 348999999 789999999999999999999998733                    33445555555555554 456


Q ss_pred             HHHHhcCCCCCChhHHHHHHHHHHccCCHHHHH-------------------------HHHHHHHhHHHHhhcCHHHHHH
Q psy14927        240 ANYLQSSDWKSQPELLKSIISFYSKGKAPHLLA-------------------------NFYVSCAQVEIDEFGNYEKGLG  294 (1074)
Q Consensus       240 a~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~aa-------------------------~~~~~~a~~ei~e~~~y~~a~~  294 (1074)
                      |.|++..     |..+++++.+|-|+|.+.+|-                         +....||.-- .+..+|+||..
T Consensus      1028 ArYyEe~-----g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF-~~~~qyekAV~ 1101 (1416)
T KOG3617|consen 1028 ARYYEEL-----GGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFF-ENNQQYEKAVN 1101 (1416)
T ss_pred             HHHHHHc-----chhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHH-HhHHHHHHHHH
Confidence            6777766     357788888888888877643                         3444556654 77788888887


Q ss_pred             HHHHH------HHHHHhcCCCchHHHHH
Q psy14927        295 ALNEA------KRCLLKHNDSMYETLKS  316 (1074)
Q Consensus       295 ~l~~a------~~~l~~~~~~~~~~~~~  316 (1074)
                      +|-.|      ++.-...|.++.++|..
T Consensus      1102 lL~~ar~~~~AlqlC~~~nv~vtee~aE 1129 (1416)
T KOG3617|consen 1102 LLCLAREFSGALQLCKNRNVRVTEEFAE 1129 (1416)
T ss_pred             HHHHHHHHHHHHHHHhcCCCchhHHHHH
Confidence            76543      33444456677777543

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.53  E-value=2.1e-14  Score=171.70  Aligned_cols=153  Identities=31%  Similarity=0.364  Sum_probs=133.2

Q ss_pred             hhhccccccccccCCceEEeccchhhc-c----HHH---HhccccccccccccccccccccccCCcceEEEEeccCCCcc
Q psy14927        372 YLEMKRNQSFRSSNTDIILPVEKWTLL-S----LAR---VLEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKV  443 (1074)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (1074)
                      .+.+..+++++||+.+||..||+.-+. .    ..|   |+.++......+++..+|..+..+++.+.+++++.+     
T Consensus       288 ~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~~~~~~~~~~a~vG~te~~-----  362 (462)
T PRK06416        288 RGFIEVDEQLRTNVPNIYAIGDIVGGPMLAHKASAEGIIAAEAIAGNPHPIDYRGIPAVTYTHPEVASVGLTEAK-----  362 (462)
T ss_pred             CCEEeECCCCccCCCCEEEeeecCCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEECCCceEEEeCCHHH-----
Confidence            566788999999999999999985322 1    112   244454445567777889999999999999998877     


Q ss_pred             cccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHHhhhc
Q psy14927        444 LGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVARTC  523 (1074)
Q Consensus       444 lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l~~~~  523 (1074)
                          ++..|+++.+...++..++|+...+.++|++||+++++|++|||+|++|++++|+|+.+++||+.+.|+++|.+++
T Consensus       363 ----a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~  438 (462)
T PRK06416        363 ----AKEEGFDVKVVKFPFAGNGKALALGETDGFVKLIFDKKDGEVLGAHMVGARASELIQEAQLAINWEATPEDLALTI  438 (462)
T ss_pred             ----HHhcCCCeEEEEEecCcChHhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCc
Confidence                7888999999999999999999989999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcccccc
Q psy14927        524 HAHPTVCVEK  533 (1074)
Q Consensus       524 ~~hPt~s~e~  533 (1074)
                      ++|||+++.+
T Consensus       439 ~~hPt~~e~~  448 (462)
T PRK06416        439 HPHPTLSEAL  448 (462)
T ss_pred             cCCCCHHHHH
Confidence            9999999765

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=99.52  E-value=2.6e-14  Score=174.06  Aligned_cols=152  Identities=23%  Similarity=0.228  Sum_probs=125.6

Q ss_pred             hhcccccccccc------CCceEEeccchh-----hccHHHH---hcccccc-------------ccccccccccccccc
Q psy14927        373 LEMKRNQSFRSS------NTDIILPVEKWT-----LLSLARV---LEGIEYK-------------VGKFPFAANSRAKTN  425 (1074)
Q Consensus       373 ~~~~~~~~~~~~------~~~~~~~~~~~~-----~~~~~~~---~~~~~~~-------------~~~~~~~~~~~~~~~  425 (1074)
                      +.+..|+++||+      ..+||..||..-     .....|+   .+.+...             ...+.+..+|.+++.
T Consensus       444 G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~~La~~A~~qg~~aa~ni~g~~~~~~~~~~~~~~~~~~~~~~iP~~ift  523 (659)
T PTZ00153        444 GFVSVDEHLRVLREDQEVYDNIFCIGDANGKQMLAHTASHQALKVVDWIEGKGKENVNINVENWASKPIIYKNIPSVCYT  523 (659)
T ss_pred             CEEeECCCCCcCCCCCCCCCCEEEEEecCCCccCHHHHHHHHHHHHHHHcCCCccccccccccccccccccCcCCEEEEC
Confidence            668899999997      579999999832     1222333   3344322             122345688999999


Q ss_pred             cCCcceEEEEeccCCCcccccccccCCC--cEEEEeeccCccchhhhcCC----------------------CcceEEEE
Q psy14927        426 NDTDGFVKVLGDKLTDKVLGVHIIGPGI--EYKVGKFPFAANSRAKTNND----------------------TDGFVKVL  481 (1074)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~--~~~v~~~~~~~~~ra~~~~~----------------------~~G~~Kli  481 (1074)
                      +|+.++|++++.+         ++..|.  ++.+...+|..+.|++.+++                      ++||+||+
T Consensus       524 ~PeiA~VGlTE~e---------A~~~g~~~~v~v~~~~~~~~~ra~~~~~~~~p~~~~~~~y~~g~~~~~~~~~G~vKli  594 (659)
T PTZ00153        524 TPELAFIGLTEKE---------AKELYPPDNVGVEISFYKANSKVLCENNISFPNNSKNNSYNKGKYNTVDNTEGMVKIV  594 (659)
T ss_pred             cCceEEeeCCHHH---------HHhcCCCcceEEEEEEecccchhhhccccccccccccccccccccccccCCceEEEEE
Confidence            9999999998887         666663  57788889999999987766                      89999999


Q ss_pred             EECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHHhhhcccCCcccccc
Q psy14927        482 GDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEK  533 (1074)
Q Consensus       482 ~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l~~~~~~hPt~s~e~  533 (1074)
                      ++++|++|||+|++|++|+|+|+.+++||+.++|+++|..++|+|||+++.+
T Consensus       595 ~d~~t~rILGa~ivG~~A~elI~~~a~aI~~~~tv~dl~~~~~~hPT~sE~~  646 (659)
T PTZ00153        595 YLKDTKEILGMFIVGSYASILIHEGVLAINLKLSVKDLAHMVHSHPTISEVL  646 (659)
T ss_pred             EECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCChHHHH
Confidence            9999999999999999999999999999999999999999999999999875

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=99.48  E-value=8e-14  Score=166.83  Aligned_cols=156  Identities=34%  Similarity=0.446  Sum_probs=134.4

Q ss_pred             HhhhhhccccccccccCCceEEeccchhh--------ccHHHHhcccccccc-ccccccccccccccCCcceEEEEeccC
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWTL--------LSLARVLEGIEYKVG-KFPFAANSRAKTNNDTDGFVKVLGDKL  439 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (1074)
                      +++.+.++.|+++||++.+||..||+..+        .....|..++..... .+++...|..+..+++.+.+++++.. 
T Consensus       283 ~~~~g~i~vd~~l~t~~~~IyaiGD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~a~vG~~~~~-  361 (461)
T TIGR01350       283 LDERGRIVVDEYMRTNVPGIYAIGDVIGGPMLAHVASHEGIVAAENIAGKEPAPIDYDAVPSCIYTDPEVASVGLTEEQ-  361 (461)
T ss_pred             ECCCCcEeeCCCcccCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCeEEecCCceEEEeCCHHH-
Confidence            45667788899999999999999998433        222333455543333 66778889999999999999988777 


Q ss_pred             CCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHH
Q psy14927        440 TDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDV  519 (1074)
Q Consensus       440 ~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l  519 (1074)
                              ++..|+++.+.+.++...+|+...+.+.||+|+++|+++++|||+|++|++++|+|+.+++|++.++|+.+|
T Consensus       362 --------a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l  433 (461)
T TIGR01350       362 --------AKEAGYDVKIGKFPFAANGKALALGETDGFVKIIADKKTGEILGAHIIGPHATELISEAVLAMELELTVEEL  433 (461)
T ss_pred             --------HHhCCCCeEEEEEeCccchHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHH
Confidence                    777899999999999999999998999999999999999999999999999999999999999999999999


Q ss_pred             hhhcccCCcccccc
Q psy14927        520 ARTCHAHPTVCVEK  533 (1074)
Q Consensus       520 ~~~~~~hPt~s~e~  533 (1074)
                      .+++++|||+++.+
T Consensus       434 ~~~~~~~P~~~e~~  447 (461)
T TIGR01350       434 AKTIHPHPTLSEAI  447 (461)
T ss_pred             hcCcccCCCHHHHH
Confidence            99999999998764

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.48  E-value=4.6e-14  Score=149.04  Aligned_cols=175  Identities=23%  Similarity=0.287  Sum_probs=103.8

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhccccccc---cchhhhhhhhhHHHhhhh----hhHHHHhhhCCeEEEee-
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVK---LNLETMMGTKSAAVKALT----GGIAHLFKSNKVTQLNG-  862 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~---~~~~~~~~~~~~~~~~l~----~~~~~~l~~~gV~~~~g-  862 (1074)
                      +||||||||||+.||.+|++     +++++.+.....   +........ ........    ..+.+.+...++++..+ 
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~   79 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEI-APHRHEFLPARLFKLVDQLKNRGVEIRLNA   79 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHH-HHHHHHHHHHHHGHHHHHHHHHTHEEEHHH
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccc-cccccccccccccccccccccceEEEeecc
Confidence            38999999999999999998     566554432221   111111111 11111111    13455556789999665 


Q ss_pred             eEEEecCCeEE-------EE-eCCCCeeEEEcCeEEEccCCCCC--CCCCCCC--CCcceechhhHhcchHhhHHhhcCC
Q psy14927        863 HGKITGPNTVT-------VI-KSDGSTEEVKTKNILIATGSEVT--PFPGIEV--DEETIVSSTGALSLKKGSVWGRLGA  930 (1074)
Q Consensus       863 ~v~~id~~~~~-------v~-~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~--~~~~v~t~~~~~~~~~A~~l~~~G~  930 (1074)
                      .+..++.....       +. ...++..++.||+||||||+.|.  .+||.+.  ....+.++..+....      ....
T Consensus        80 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~------~~~~  153 (201)
T PF07992_consen   80 KVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFLELL------ESPK  153 (201)
T ss_dssp             TEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHHTHS------STTS
T ss_pred             ccccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCccccccccccccccccccc------cccc
Confidence            67777754332       21 12334478999999999999873  4454310  001222333332211      1111


Q ss_pred             cEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcc
Q psy14927        931 EVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRP 1010 (1074)
Q Consensus       931 ~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p 1010 (1074)
                      +|.++-                                                                          
T Consensus       154 ~v~VvG--------------------------------------------------------------------------  159 (201)
T PF07992_consen  154 RVAVVG--------------------------------------------------------------------------  159 (201)
T ss_dssp             EEEEES--------------------------------------------------------------------------
T ss_pred             cccccc--------------------------------------------------------------------------
Confidence            333331                                                                          


Q ss_pred             cCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCC
Q psy14927       1011 YTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGP 1053 (1074)
Q Consensus      1011 ~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~ 1053 (1074)
                       +.++. ...+++++++|+|.||+++||++||||++|||++.+
T Consensus       160 -~~~l~-~~~~~~~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~  200 (201)
T PF07992_consen  160 -TEFLA-EKLGVELDENGFIKVDENLQTSVPGIYAAGDCAGIY  200 (201)
T ss_dssp             -TTTST-HHTTSTBTTTSSBEEBTTSBBSSTTEEE-GGGBEES
T ss_pred             -ccccc-cccccccccccccccccccccccccccccccccccC
Confidence             44432 678899999999999999999999999999998754

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=99.47  E-value=1e-13  Score=165.55  Aligned_cols=154  Identities=15%  Similarity=0.140  Sum_probs=125.7

Q ss_pred             hhhccccccccccCCceEEeccchh--hccH-------HHHhccccc-cccccccccccccccccCCcceEEEEeccCCC
Q psy14927        372 YLEMKRNQSFRSSNTDIILPVEKWT--LLSL-------ARVLEGIEY-KVGKFPFAANSRAKTNNDTDGFVKVLGDKLTD  441 (1074)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (1074)
                      ++.++.++++|||..+||..||...  .+..       ..|..++.. .....++..+|..+..+|+.+.|++++.+   
T Consensus       297 ~G~I~Vd~~~~Ts~p~IyA~GDv~~~~~~l~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~i~~~p~ia~vGlte~~---  373 (484)
T TIGR01438       297 TGKIPADEEEQTNVPYIYAVGDILEDKQELTPVAIQAGRLLAQRLFSGSTVICDYENVPTTVFTPLEYGACGLSEEK---  373 (484)
T ss_pred             CCeEecCCCcccCCCCEEEEEEecCCCccchHHHHHHHHHHHHHHhcCCCcccccccCCeEEeCCCceeeecCCHHH---
Confidence            4668889999999999999999742  1112       222333332 22235677899999999999999998777   


Q ss_pred             cccccccccC-CC-cEEEEeeccCccchhhhcCC--CcceEEEEEE-CCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCH
Q psy14927        442 KVLGVHIIGP-GI-EYKVGKFPFAANSRAKTNND--TDGFVKVLGD-KLTDKVLGVHIIGPAAGELINEAVLAMEYGASC  516 (1074)
Q Consensus       442 ~~lg~~~~~~-g~-~~~v~~~~~~~~~ra~~~~~--~~G~~Kli~~-~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~  516 (1074)
                            +++. |. .+.+...++..++++...++  +.||+|++++ ++|++|||+|++|++|+|+|+.+++||+.+.|+
T Consensus       374 ------a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~t~~ILG~~ivg~~a~e~I~~~a~ai~~~~t~  447 (484)
T TIGR01438       374 ------AVEKFGEENIEVFHSYFWPLEWTIPSRDNSNKCYAKAVCNRKENERVVGFHVVGPNAGEVTQGFAAALRCGLTK  447 (484)
T ss_pred             ------HHHhcCCCcEEEEEeecchhhhHhhCCCccCCcEEEEEEecCCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCH
Confidence                  6655 44 68888899999999888765  7899999985 579999999999999999999999999999999


Q ss_pred             HHHhhhcccCCccccccc
Q psy14927        517 EDVARTCHAHPTVCVEKN  534 (1074)
Q Consensus       517 ~~l~~~~~~hPt~s~e~~  534 (1074)
                      ++|.+++|+|||+++.+.
T Consensus       448 ~dl~~~~~~hPt~sE~~~  465 (484)
T TIGR01438       448 KDLDNTIGIHPVCAEVFT  465 (484)
T ss_pred             HHHhhhhcCCCChHHHHH
Confidence            999999999999997653

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=99.46  E-value=6e-13  Score=163.28  Aligned_cols=112  Identities=13%  Similarity=0.030  Sum_probs=76.9

Q ss_pred             EEEEecCCccCCCCC---CHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe--EEEEEeec-------c----CCC---
Q psy14927        932 VTAIEFMNAIGGMGI---DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN--ITVTIENV-------K----DPT---  992 (1074)
Q Consensus       932 Vtlv~~~~~~~~~~~---~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~~-------~----~~g---  992 (1074)
                      ||+++|+..--+|..   ..++     +...+.||.|+.+..+.+|..++++  ..+++..-       .    .++   
T Consensus       626 VtIvYRr~~~empA~~~~~eEv-----~~A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~  700 (1028)
T PRK06567        626 ATVYYRGRLQDSPAYKLNHEEL-----IYALALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGL  700 (1028)
T ss_pred             eEEEecCChhhCCCCCCCHHHH-----HHHHHcCcEEEecCCcEEEEecCCCeEEEEEEEEEeccccccccccccccccc
Confidence            999999887665554   2333     2335679999999999999765332  33333310       0    011   


Q ss_pred             ----------CceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcHHHHHHH
Q psy14927        993 ----------KKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDE 1062 (1074)
Q Consensus       993 ----------~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~~~A~~~ 1062 (1074)
                                +..+++||.||+|+|+.||+.+..               .+..+-++.+++|+.        ++..|+.+
T Consensus       701 ~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~~---------------~~~s~~~d~~~~f~G--------tvv~A~as  757 (1028)
T PRK06567        701 TRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFDE---------------DKYSYFGDCNPKYSG--------SVVKALAS  757 (1028)
T ss_pred             CCcCcccCCCccccccCCEEEEecccCCcccccc---------------cccccccCCCCcccc--------HHHHHHHH
Confidence                      457899999999999999998620               112333556667765        78899999


Q ss_pred             HHHHHHHhh
Q psy14927       1063 GIVCVEGIA 1071 (1074)
Q Consensus      1063 G~~aA~~I~ 1071 (1074)
                      |+.++.+|.
T Consensus       758 ~k~~~~~i~  766 (1028)
T PRK06567        758 SKEGYDAIN  766 (1028)
T ss_pred             HHhHHHHHH
Confidence            999999984

>KOG1538|consensus

Probab=99.46  E-value=3e-13  Score=152.37  Aligned_cols=161  Identities=12%  Similarity=0.126  Sum_probs=146.9

Q ss_pred             HHHH--HHhhh------hHHHHHHHHHHHHhhhcHHHHHHHHHHhhCHHHHHHHHHHcCCHHHHHHHHHhcCCcHHH--H
Q psy14927        614 KQII--LILII------YRVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAA--Y  683 (1074)
Q Consensus       614 ~~~~--~~~~~------~~~l~~~~a~~~e~~~~~~~A~~~y~~ag~~~~ai~~~~~~~~~~~a~~v~~~~~~~~~~--~  683 (1074)
                      ||||  ++.++      .++++++.|+|.-+-.+++.|++..+.||+.++||++...+++.+-++++.+..+.++..  +
T Consensus       672 RMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~  751 (1081)
T KOG1538|consen  672 RMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLL  751 (1081)
T ss_pred             HHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHH
Confidence            5666  44444      448999999999999999999999999999999999999999999999999866654443  3


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHcCCHHHHHHH---hccHHHHHHHHHHhCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy14927        684 HLARQYENSGQFDEAIHFYSVAGSCGNAVRL---CGQLDAVESIASELNVQSDQDLILKCASYFARREHHDRAVQMYAIA  760 (1074)
Q Consensus       684 ~~A~~~~~~g~~~~A~~~~~kag~~~~Av~m---a~~w~~a~~~A~~~~~~~~~~~~~~~a~~~~~~~~~~~Ai~~y~~a  760 (1074)
                      .+|.+|.....+.-|.+.|.+-|+.+..|+|   +++|.+|+++|+.| |+..+++|.++|+||...+++++|.+.|.++
T Consensus       752 ~~a~ylk~l~~~gLAaeIF~k~gD~ksiVqlHve~~~W~eAFalAe~h-Pe~~~dVy~pyaqwLAE~DrFeEAqkAfhkA  830 (1081)
T KOG1538|consen  752 LCATYLKKLDSPGLAAEIFLKMGDLKSLVQLHVETQRWDEAFALAEKH-PEFKDDVYMPYAQWLAENDRFEEAQKAFHKA  830 (1081)
T ss_pred             HHHHHHhhccccchHHHHHHHhccHHHHhhheeecccchHhHhhhhhC-ccccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence            8999999999999999999999999999999   89999999999999 9999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHcCC
Q psy14927        761 RRYDQALSLIQTKHV  775 (1074)
Q Consensus       761 g~~~~Ai~~~~~~~~  775 (1074)
                      |+-.+|+++++....
T Consensus       831 Gr~~EA~~vLeQLtn  845 (1081)
T KOG1538|consen  831 GRQREAVQVLEQLTN  845 (1081)
T ss_pred             cchHHHHHHHHHhhh
Confidence            999999999887644

>PTZ00058 glutathione reductase; Provisional

Probab=99.44  E-value=2.2e-13  Score=163.96  Aligned_cols=154  Identities=16%  Similarity=0.125  Sum_probs=125.8

Q ss_pred             hhhhccccccccccCCceEEeccchh----------------------------------hcc--------HHHHhcccc
Q psy14927        371 KYLEMKRNQSFRSSNTDIILPVEKWT----------------------------------LLS--------LARVLEGIE  408 (1074)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~--------~~~~~~~~~  408 (1074)
                      +.+.++.|+++|||+.+||..||...                                  ++.        ...|..++.
T Consensus       351 ~~G~I~VDe~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~  430 (561)
T PTZ00058        351 PKGYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLF  430 (561)
T ss_pred             CCCeEEECcCCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHh
Confidence            45678899999999999999999954                                  111        112233333


Q ss_pred             cc-ccccccccccccccccCCcceEEEEeccCCCcccccccccC-CC-cEEEEeeccCccchhhhc----CCCcceEEEE
Q psy14927        409 YK-VGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGP-GI-EYKVGKFPFAANSRAKTN----NDTDGFVKVL  481 (1074)
Q Consensus       409 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~-~~~v~~~~~~~~~ra~~~----~~~~G~~Kli  481 (1074)
                      .. ....++..+|.+++.+|+.+.|++++.+         ++.. |+ ++.+...++..+.+++..    +.++|++|++
T Consensus       431 g~~~~~~~~~~ip~~vft~peiA~vGlte~e---------A~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli  501 (561)
T PTZ00058        431 GPFSRTTNYKLIPSVIFSHPPIGTIGLSEQE---------AIDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYLKLV  501 (561)
T ss_pred             CCCCcccCCCCCCeEEeCCchheeeeCCHHH---------HHHhcCCCcEEEEEeecchhhhhhhcccccCCCCeEEEEE
Confidence            21 2223466899999999999999998877         6555 54 588888899988888754    3578999999


Q ss_pred             EECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHHhhhcccCCcccccc
Q psy14927        482 GDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEK  533 (1074)
Q Consensus       482 ~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l~~~~~~hPt~s~e~  533 (1074)
                      ++++|++|||+|++|++|+|+|+.+++|++.+.|+++|.+++|+|||+++..
T Consensus       502 ~~~~t~~ILG~~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPt~~e~~  553 (561)
T PTZ00058        502 CVGKEELIKGLHIVGLNADEILQGFAVALKMNATKADFDETIPIHPTAAEEF  553 (561)
T ss_pred             EECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCChHHHH
Confidence            9999999999999999999999999999999999999999999999999875

>PTZ00052 thioredoxin reductase; Provisional

Probab=99.43  E-value=2.6e-13  Score=162.82  Aligned_cols=155  Identities=17%  Similarity=0.138  Sum_probs=120.0

Q ss_pred             HhhhhhccccccccccCCceEEeccchhh--ccHHH-------Hhccccccc-cccccccccccccccCCcceEEEEecc
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWTL--LSLAR-------VLEGIEYKV-GKFPFAANSRAKTNNDTDGFVKVLGDK  438 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (1074)
                      +++.+.+..++. +||+.+||..||...+  .....       |..++.... ...++..+|.+++.+|+.++|++++..
T Consensus       292 ~~~~G~ii~~~~-~Ts~p~IyAiGDv~~~~~~l~~~A~~~g~~aa~ni~g~~~~~~~~~~~p~~ift~p~ia~vGlte~~  370 (499)
T PTZ00052        292 VNKSNKIIAPND-CTNIPNIFAVGDVVEGRPELTPVAIKAGILLARRLFKQSNEFIDYTFIPTTIFTPIEYGACGYSSEA  370 (499)
T ss_pred             ECCCCCEeeCCC-cCCCCCEEEEEEecCCCcccHHHHHHHHHHHHHHHhCCCCCcCccccCCeEEecCCcceeecCCHHH
Confidence            455555444555 9999999999996432  22222       233443222 224567789999999999999998887


Q ss_pred             CCCcccccccccC-C-CcEEEEeeccCccchhhhcC---------------CCcceEEEEEECC-CCcEEEEEEeCCChh
Q psy14927        439 LTDKVLGVHIIGP-G-IEYKVGKFPFAANSRAKTNN---------------DTDGFVKVLGDKL-TDKVLGVHIIGPAAG  500 (1074)
Q Consensus       439 ~~~~~lg~~~~~~-g-~~~~v~~~~~~~~~ra~~~~---------------~~~G~~Kli~~~~-~~~ilG~~iiG~~a~  500 (1074)
                               ++.. | .++.+...+|..++++....               .++||+|++++++ |++|||+|++|++|+
T Consensus       371 ---------A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~IlG~~ivg~~A~  441 (499)
T PTZ00052        371 ---------AIAKYGEDDIEEYLQEFNTLEIAAVHREKHERARKDEYDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPNAG  441 (499)
T ss_pred             ---------HHHhcCCCCEEEEEeecccchhhccccccccccccccccccccCCceEEEEEecCCCCEEEEEEEECCCHH
Confidence                     6655 4 46888888887766554322               2789999999984 899999999999999


Q ss_pred             HHHHHHHHHHHcCCCHHHHhhhcccCCcccccc
Q psy14927        501 ELINEAVLAMEYGASCEDVARTCHAHPTVCVEK  533 (1074)
Q Consensus       501 eli~~~a~a~~~~~~~~~l~~~~~~hPt~s~e~  533 (1074)
                      |+|+.+++||+.+.|+.+|.+++|+|||++|.+
T Consensus       442 elI~~~~~ai~~~~t~~~l~~~~~~hPt~sE~~  474 (499)
T PTZ00052        442 EITQGFSLALKLGAKKSDFDSMIGIHPTDAEVF  474 (499)
T ss_pred             HHHHHHHHHHHCCCCHHHHhcccccCCCCchhh
Confidence            999999999999999999999999999999865

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.40  E-value=2.2e-08  Score=129.68  Aligned_cols=138  Identities=17%  Similarity=0.162  Sum_probs=95.4

Q ss_pred             hHHHHHHHHHHHHhhhcHHHHHHHHHHhh-------CHHHHHHHHHHcCCHHHHHHHHH----hc-CCcHHHHHHHHHHH
Q psy14927        623 YRVLLKWWAQYIESTEDMDLAMKYYEEAR-------DYLSMVRVLCFLQDFSRAAELAN----AS-GDTAAAYHLARQYE  690 (1074)
Q Consensus       623 ~~~l~~~~a~~~e~~~~~~~A~~~y~~ag-------~~~~ai~~~~~~~~~~~a~~v~~----~~-~~~~~~~~~A~~~~  690 (1074)
                      ++......|......|+|++|.+.|.++-       .+-....+|...+++++|.+..+    .. ++......+|..+.
T Consensus       702 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~  781 (899)
T TIGR02917       702 AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYL  781 (899)
T ss_pred             ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            45667777888888999999999998873       23456677899999999997773    22 33334448899999


Q ss_pred             hcCCHHHHHHHHHHcC--CHHHHHHH---------hccHHHHHHHHHHhC--CcccHHHHHHHHHHHHHcCCHHHHHHHH
Q psy14927        691 NSGQFDEAIHFYSVAG--SCGNAVRL---------CGQLDAVESIASELN--VQSDQDLILKCASYFARREHHDRAVQMY  757 (1074)
Q Consensus       691 ~~g~~~~A~~~~~kag--~~~~Av~m---------a~~w~~a~~~A~~~~--~~~~~~~~~~~a~~~~~~~~~~~Ai~~y  757 (1074)
                      ..|+++.|+++|-++-  .|....-+         .++ .+|..+.++..  .+..+..+..+|..+...|+++.|+++|
T Consensus       782 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~  860 (899)
T TIGR02917       782 AQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLL  860 (899)
T ss_pred             HCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999998762  23222211         355 66666666642  2344466667777777777777777776


Q ss_pred             HHhC
Q psy14927        758 AIAR  761 (1074)
Q Consensus       758 ~~ag  761 (1074)
                      .++-
T Consensus       861 ~~a~  864 (899)
T TIGR02917       861 RKAV  864 (899)
T ss_pred             HHHH
Confidence            6553

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.35  E-value=1.2e-07  Score=122.63  Aligned_cols=134  Identities=19%  Similarity=0.157  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHhh--------CHHHHHHHHHHcCCHHHHHHHHHh----c-CCcHHHHHHHHHHHhc
Q psy14927        626 LLKWWAQYIESTEDMDLAMKYYEEAR--------DYLSMVRVLCFLQDFSRAAELANA----S-GDTAAAYHLARQYENS  692 (1074)
Q Consensus       626 l~~~~a~~~e~~~~~~~A~~~y~~ag--------~~~~ai~~~~~~~~~~~a~~v~~~----~-~~~~~~~~~A~~~~~~  692 (1074)
                      .....+......|++++|...|.++-        -|....++|...+++++|.+..+.    . ........+|..+...
T Consensus       569 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  648 (899)
T TIGR02917       569 PALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVM  648 (899)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence            44455666666667777776666542        133444556666777777665531    1 2222333667777777


Q ss_pred             CCHHHHHHHHHHcCCH--H--HHH-HH------hccHHHHHHHHHHhCC--cccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy14927        693 GQFDEAIHFYSVAGSC--G--NAV-RL------CGQLDAVESIASELNV--QSDQDLILKCASYFARREHHDRAVQMYAI  759 (1074)
Q Consensus       693 g~~~~A~~~~~kag~~--~--~Av-~m------a~~w~~a~~~A~~~~~--~~~~~~~~~~a~~~~~~~~~~~Ai~~y~~  759 (1074)
                      |++++|..+|.++-..  .  .+. .+      .+++++|.++.+....  +..+..+..++..+...|+++.|+++|.+
T Consensus       649 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~  728 (899)
T TIGR02917       649 KNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRK  728 (899)
T ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            7777777777665221  1  111 11      4666666666655422  22335555666666666666666665554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG2755|consensus

Probab=99.31  E-value=2.5e-12  Score=132.15  Aligned_cols=180  Identities=19%  Similarity=0.230  Sum_probs=108.4

Q ss_pred             EEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCC-CCCCCCCccee---chhhHhcchH----------------hh
Q psy14927        864 GKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPF-PGIEVDEETIV---SSTGALSLKK----------------GS  923 (1074)
Q Consensus       864 v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~i-pgi~~~~~~v~---t~~~~~~~~~----------------A~  923 (1074)
                      |..++....-+++.+|  ..+.|++|+++||++|... .++   .+.++   ..+....++.                |.
T Consensus        73 v~~~~s~ehci~t~~g--~~~ky~kKOG~tg~kPklq~E~~---n~~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~  147 (334)
T KOG2755|consen   73 VVTWDSSEHCIHTQNG--EKLKYFKLCLCTGYKPKLQVEGI---NPKIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAM  147 (334)
T ss_pred             hhhhccccceEEecCC--ceeeEEEEEEecCCCcceeecCC---CceEEEEecCcHHHHHHHHHhhcceEEEEecCchhH
Confidence            5566667777888999  7899999999999999432 222   22222   3333333222                33


Q ss_pred             HH--hhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCC------------CEEEeCce-------------------
Q psy14927        924 VW--GRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQG------------MQFKLGTK-------------------  970 (1074)
Q Consensus       924 ~l--~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~g------------V~i~~~~~-------------------  970 (1074)
                      .+  --.+.+|+.....+.+...-++|.+.+.+...|...+            ++.+.+..                   
T Consensus       148 El~yElk~~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~dl~  227 (334)
T KOG2755|consen  148 ELTYELKILNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQ  227 (334)
T ss_pred             HHHHHhhcceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCcccccCcccccCcchhhhcccc
Confidence            22  2235678877777776644566666666654441110            11111100                   


Q ss_pred             ----------------EEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCC
Q psy14927        971 ----------------VTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNS 1034 (1074)
Q Consensus       971 ----------------v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~ 1034 (1074)
                                      +..+....+...++..+. ..+.-..+.||.+++++|..||.++  .-...+.+.++|.+.||+
T Consensus       228 g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~-ek~~~~qlt~d~ivSatgvtpn~e~--~~~~~lq~~edggikvdd  304 (334)
T KOG2755|consen  228 GISESENRSLTYLRNCVITSTDTSDNLSVHYMDK-EKMADNQLTCDFIVSATGVTPNSEW--AMNKMLQITEDGGIKVDD  304 (334)
T ss_pred             cchhhhhhhhHHhhhheeeeccchhhcccccccc-cccccceeeeeEEEeccccCcCceE--EecChhhhccccCeeehh
Confidence                            000000000000110000 0122346789999999999999996  556667778899999999


Q ss_pred             CCCCCCCCEEEecccCC
Q psy14927       1035 RFQTVIPNIFAIGDCIH 1051 (1074)
Q Consensus      1035 ~~~ts~~~IyAiGD~~~ 1051 (1074)
                      .++|+.|+|||+||+++
T Consensus       305 ~m~tslpdvFa~gDvct  321 (334)
T KOG2755|consen  305 AMETSLPDVFAAGDVCT  321 (334)
T ss_pred             hccccccceeeecceec
Confidence            99999999999999876

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=99.27  E-value=1.1e-11  Score=147.06  Aligned_cols=152  Identities=19%  Similarity=0.146  Sum_probs=119.4

Q ss_pred             HhhhhhccccccccccCCceEEeccchhh------c---------cHHH---Hhccccccc-ccc-ccccccccccccCC
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWTL------L---------SLAR---VLEGIEYKV-GKF-PFAANSRAKTNNDT  428 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~---------~~~~---~~~~~~~~~-~~~-~~~~~~~~~~~~~~  428 (1074)
                      +++++.+..|+++||++.+||..||....      +         ...|   +..++.... ..| ....+|.++..+++
T Consensus       253 ~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~  332 (438)
T PRK13512        253 LDDKGFIPVNDKFETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYT  332 (438)
T ss_pred             cCCCCcEEECCCcccCCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhcCCCccccCCcccceEEEEcCce
Confidence            56677788999999999999999999531      1         1223   244454322 123 24567888999999


Q ss_pred             cceEEEEeccCCCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCC-hhHHHHHHH
Q psy14927        429 DGFVKVLGDKLTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPA-AGELINEAV  507 (1074)
Q Consensus       429 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~-a~eli~~~a  507 (1074)
                      .+.+++++.+         ++..  ++.+...++....+.. .+.+.||+|+++|++|++|||+|++|++ ++|+|+.++
T Consensus       333 ia~vGlte~~---------a~~~--~~~~~~~~~~~~~~~~-~~~~~g~~klv~d~~~~~ilGa~~~g~~~a~e~i~~~~  400 (438)
T PRK13512        333 FASVGVKPNE---------LKQF--DYKMVEVTQGAHANYY-PGNSPLHLRVYYDTSNRKILRAAAVGKEGADKRIDVLS  400 (438)
T ss_pred             EEeecCCHHH---------HccC--CcEEEEEecCCcCCCc-CCCceEEEEEEEECCCCeEEEEEEEccccHHHHHHHHH
Confidence            9999987776         3333  4677777777776665 7889999999999999999999999997 899999999


Q ss_pred             HHHHcCCCHHHHhhh-cccCCccccc
Q psy14927        508 LAMEYGASCEDVART-CHAHPTVCVE  532 (1074)
Q Consensus       508 ~a~~~~~~~~~l~~~-~~~hPt~s~e  532 (1074)
                      ++++.+.|+++|..+ +++||+++..
T Consensus       401 ~ai~~~~t~~~l~~~~~~~~P~~~~~  426 (438)
T PRK13512        401 MAMMNQLTVDELTEFEVAYAPPYSHP  426 (438)
T ss_pred             HHHHcCCcHHHHhhcccccCCCCCcc
Confidence            999999999999996 8899998744

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=99.26  E-value=4.8e-11  Score=142.92  Aligned_cols=264  Identities=16%  Similarity=0.106  Sum_probs=135.5

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhh----------------------------hhhhh--H
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETM----------------------------MGTKS--A  839 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~----------------------------~~~~~--~  839 (1074)
                      |+|+||||||+||.+|..+..     ++||+.+..||.+.+..-                            +...+  .
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~   81 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP   81 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence            459999999999999999988     899999999998764310                            00000  0


Q ss_pred             HHhhhhhhHHHHhhhCCeE--EEee-eEEEecC-------CeEEEEeC-CCCeeEEEcCeEEEccCCC--CC----CCCC
Q psy14927        840 AVKALTGGIAHLFKSNKVT--QLNG-HGKITGP-------NTVTVIKS-DGSTEEVKTKNILIATGSE--VT----PFPG  902 (1074)
Q Consensus       840 ~~~~l~~~~~~~l~~~gV~--~~~g-~v~~id~-------~~~~v~~~-~G~~~~i~~d~lIIATG~~--p~----~ipg  902 (1074)
                      ...++..++..+.+.+++.  +.++ +|+.+..       ...+|++. +|...+-.||+||||||-.  |.    .+||
T Consensus        82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~~G  161 (531)
T PF00743_consen   82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSFPG  161 (531)
T ss_dssp             BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----CT
T ss_pred             CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhhhh
Confidence            1145666778888877763  6666 4665532       34667664 4444567799999999974  31    2566


Q ss_pred             CCCCCcceechhhHhcchH------------------hhHHhhcCCcEEEEecCCccCCCCCCH----------------
Q psy14927        903 IEVDEETIVSSTGALSLKK------------------GSVWGRLGAEVTAIEFMNAIGGMGIDG----------------  948 (1074)
Q Consensus       903 i~~~~~~v~t~~~~~~~~~------------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~----------------  948 (1074)
                      ++.....++++.++.....                  |..+...+++|++..|++....|....                
T Consensus       162 ~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~D~~~~~R~~~~  241 (531)
T PF00743_consen  162 LEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPFDMVFSTRFSSF  241 (531)
T ss_dssp             GGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC---------------------------
T ss_pred             hhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccccccccccccccccccccccccccc
Confidence            5444446777777655433                  666777788899888776432222110                


Q ss_pred             -------HHHHHH-HHHHH--------------------------------hCCCEEEeCceEEEEEecCCeEEEEEeec
Q psy14927        949 -------EVAKQF-QRILG--------------------------------KQGMQFKLGTKVTGASKSGDNITVTIENV  988 (1074)
Q Consensus       949 -------~~~~~~-~~~l~--------------------------------~~gV~i~~~~~v~~i~~~~~~~~v~~~~~  988 (1074)
                             .+...+ .+.+.                                ...|.+..  .|.++.+  +  .|.+.| 
T Consensus       242 l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk~--~I~~~~~--~--~v~F~D-  314 (531)
T PF00743_consen  242 LQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVKP--DIKRFTE--N--SVIFED-  314 (531)
T ss_dssp             ---------------------------------------------------------EE---EEEE-S--S--EEEETT-
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccc--c--cccccc-
Confidence                   000000 00000                                00111111  1222221  1  233443 


Q ss_pred             cCCCCceE-EEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCC-CCC--CCCCEEEecccCCCCCcHHHHHHHHH
Q psy14927        989 KDPTKKEE-LSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSR-FQT--VIPNIFAIGDCIHGPMLAHKAEDEGI 1064 (1074)
Q Consensus       989 ~~~g~~~~-i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~-~~t--s~~~IyAiGD~~~~~~~~~~A~~~G~ 1064 (1074)
                           +++ .++|.||+|||++...+++.  ..-+..+ ++.+..-.+ +-.  ..|++..+|=+.........+..|++
T Consensus       315 -----Gs~~e~vD~II~~TGY~~~fpFL~--~~~~~~~-~~~~~LYk~vfp~~~~~ptLafIG~~~~~g~~fp~~ElQAr  386 (531)
T PF00743_consen  315 -----GSTEEDVDVIIFCTGYKFSFPFLD--ESLIKVD-DNRVRLYKHVFPPNLDHPTLAFIGLVQPFGSIFPIFELQAR  386 (531)
T ss_dssp             -----SEEEEE-SEEEE---EE---TTB---TTTT-S--SSSSSEETTTEETETTSTTEEESS-SBSSS-HHHHHHHHHH
T ss_pred             -----cccccccccccccccccccccccc--ccccccc-ccccccccccccccccccccccccccccccccccccccccc
Confidence                 344 47999999999999888853  3223322 222221111 112  45889999976433334567889999


Q ss_pred             HHHHHhhCC
Q psy14927       1065 VCVEGIAGD 1073 (1074)
Q Consensus      1065 ~aA~~I~~~ 1073 (1074)
                      .+|.-+.|.
T Consensus       387 w~a~v~sG~  395 (531)
T PF00743_consen  387 WAARVFSGR  395 (531)
T ss_dssp             HHHHHHTTS
T ss_pred             ccccccccc
Confidence            999877663

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=99.23  E-value=2.7e-10  Score=132.36  Aligned_cols=143  Identities=20%  Similarity=0.242  Sum_probs=105.8

Q ss_pred             hHHh----hcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEE
Q psy14927        923 SVWG----RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELS  998 (1074)
Q Consensus       923 ~~l~----~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~  998 (1074)
                      ..+.    ++|.+|+++.+.+..+ +.  .++.+.+.+.+++.|++++.++.|.+++.+++++.+....   +++...+.
T Consensus       233 ~v~~~L~~~LG~~V~~vp~~ppsl-pG--~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~---~g~~~~i~  306 (422)
T PRK05329        233 AVLAELEEALGCPVFELPTLPPSV-PG--LRLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTR---NHGDIPLR  306 (422)
T ss_pred             HHHHHHHHHHCCCEEEeCCCCCCC-ch--HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEee---CCceEEEE
Confidence            5554    5699999998888877 44  3688889999999999999999999998766655443332   35556899


Q ss_pred             cCEEEEccCCcccCCcc---------------------------------CccccCcccCCCCCeeeCCCCCCCCCCEEE
Q psy14927        999 CDALLVCVGRRPYTHNL---------------------------------GLEEIGIEKDEKGRVPVNSRFQTVIPNIFA 1045 (1074)
Q Consensus       999 ~D~vi~a~G~~p~~~~l---------------------------------~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyA 1045 (1074)
                      +|.||+|+|+.+...+.                                 ++...|+.+|+. +..+|...++.++|+||
T Consensus       307 AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~-~~p~~~~g~~~~~nl~a  385 (422)
T PRK05329        307 ARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDAT-LRPLDSQGGPVIENLYA  385 (422)
T ss_pred             CCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCC-cCcccCCCCeeccceEE
Confidence            99999999987665431                                 123445555443 44455556677899999


Q ss_pred             ecccCCCCCcH------HHHHHHHHHHHHHhhC
Q psy14927       1046 IGDCIHGPMLA------HKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus      1046 iGD~~~~~~~~------~~A~~~G~~aA~~I~~ 1072 (1074)
                      +|++.+++..+      -.|+..|..||++|+.
T Consensus       386 ~G~vl~g~d~~~~~~g~Gva~~ta~~a~~~~~~  418 (422)
T PRK05329        386 AGAVLGGYDPIREGCGSGVALATALHAAEQIAE  418 (422)
T ss_pred             eeehhcCCchHHhCCCchhHHHHHHHHHHHHHH
Confidence            99999876543      4788899999988874

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=99.23  E-value=2e-11  Score=145.47  Aligned_cols=155  Identities=17%  Similarity=0.061  Sum_probs=125.8

Q ss_pred             HhhhhhccccccccccCCceEEeccchhh---------------ccHHH---Hhccccccccccccccccccc-cccCCc
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWTL---------------LSLAR---VLEGIEYKVGKFPFAANSRAK-TNNDTD  429 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~  429 (1074)
                      +++.+.+..|+++||+..|||..||....               ....|   |+.++......+|...++-++ ..+++.
T Consensus       258 ~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~  337 (444)
T PRK09564        258 TLKNGAIIVDEYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGRHVSFKGTLGSACIKVLDLEA  337 (444)
T ss_pred             ccCCCCEEECCCcccCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcCCCCCCCCcccceEEEECCEEE
Confidence            45667788999999999999999999532               11223   355565544456655555544 689999


Q ss_pred             ceEEEEeccCCCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCC-hhHHHHHHHH
Q psy14927        430 GFVKVLGDKLTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPA-AGELINEAVL  508 (1074)
Q Consensus       430 ~~~~~~~~~~~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~-a~eli~~~a~  508 (1074)
                      ++++++..+         ++..|+++.+.+++.. ..++...+.+.||+|+++|++|++|||+|++|+. ++++|+.+++
T Consensus       338 a~vG~t~~~---------a~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~~~~~~i~~~~~  407 (444)
T PRK09564        338 ARTGLTEEE---------AKKLGIDYKTVFIKDK-NHTNYYPGQEDLYVKLIYEADTKVILGGQIIGKKGAVLRIDALAV  407 (444)
T ss_pred             EEecCCHHH---------HHHCCCCeEEEEEecC-CCCCcCCCCceEEEEEEEECCCCeEEeEEEEcCccHHHHHHHHHH
Confidence            999998776         7777889999888764 4566778889999999999999999999999996 8899999999


Q ss_pred             HHHcCCCHHHHhhhcccC-Ccccccc
Q psy14927        509 AMEYGASCEDVARTCHAH-PTVCVEK  533 (1074)
Q Consensus       509 a~~~~~~~~~l~~~~~~h-Pt~s~e~  533 (1074)
                      |++.+.|+++|..+.++| |++++..
T Consensus       408 ~i~~~~~~~~~~~~~~~~~p~~~~~~  433 (444)
T PRK09564        408 AIYAKLTTQELGMMDFCYAPPFARTW  433 (444)
T ss_pred             HHHCCCCHHHHhhcccccCCCCCCCc
Confidence            999999999999999988 9998654

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=99.12  E-value=1.5e-10  Score=137.15  Aligned_cols=152  Identities=16%  Similarity=0.083  Sum_probs=122.6

Q ss_pred             HhhhhhccccccccccCCceEEeccchhh-----------cc----HHH---Hhccccccccccc-cccccccccccCCc
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWTL-----------LS----LAR---VLEGIEYKVGKFP-FAANSRAKTNNDTD  429 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~----~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~  429 (1074)
                      +++.+.+..++.+||++.+||..||+...           .+    ..|   |++++......++ ...++..+..+++.
T Consensus       245 ~~~~G~i~vd~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~  324 (427)
T TIGR03385       245 LGETGAIWVNEKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAGNDIEFKGVLGTNITKFFDLTI  324 (427)
T ss_pred             cCCCCCEEECCCcEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhcCCCCCCCCcceeeEEEEcCeEE
Confidence            45667788899999999999999999531           11    122   2555554333332 22567888999999


Q ss_pred             ceEEEEeccCCCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCC-hhHHHHHHHH
Q psy14927        430 GFVKVLGDKLTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPA-AGELINEAVL  508 (1074)
Q Consensus       430 ~~~~~~~~~~~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~-a~eli~~~a~  508 (1074)
                      ++++++..+         ++..|+++.+..+++...+++. .+.+.|++|++++++|++|||+|++|++ ++|+|+.+++
T Consensus       325 a~vG~t~~~---------a~~~g~~~~~~~~~~~~~~~~~-~~~~~g~~kli~~~~~~~ilG~~~~g~~~a~e~i~~~~~  394 (427)
T TIGR03385       325 ASTGVTENE---------AKKLNIDYKTVFVKAKTHANYY-PGNSPLHLKLIYEKDTRRILGAQAVGKEGADKRIDVLAA  394 (427)
T ss_pred             EEecCCHHH---------HHHCCCCeEEEEEecCCCCCcC-CCCceEEEEEEEECCCCeEEEEEEEccccHHHHHHHHHH
Confidence            999998877         7777889999888887766655 5788999999999999999999999999 9999999999


Q ss_pred             HHHcCCCHHHHhhhcc-cCCccc
Q psy14927        509 AMEYGASCEDVARTCH-AHPTVC  530 (1074)
Q Consensus       509 a~~~~~~~~~l~~~~~-~hPt~s  530 (1074)
                      |++.+.|+++|.+++| .||.+.
T Consensus       395 ai~~~~t~~~l~~~~~~~~p~~~  417 (427)
T TIGR03385       395 AIMAGLTVKDLFFFELAYAPPYS  417 (427)
T ss_pred             HHHCCCCHHHHhhcccccCCCCC
Confidence            9999999999999986 678775

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PTZ00188 adrenodoxin reductase; Provisional

Probab=99.11  E-value=5e-10  Score=129.66  Aligned_cols=98  Identities=12%  Similarity=0.055  Sum_probs=69.7

Q ss_pred             chhhhhhccccchHHHHHHHhh------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEe
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKIT  867 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~i  867 (1074)
                      .++|+||||||||+.||.++.+      ++||+.+.+||.+++...+.+ . ..+.+...+...+...+++|+.+.  .+
T Consensus        39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh-~-~~k~v~~~f~~~~~~~~v~f~gnv--~V  114 (506)
T PTZ00188         39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDH-I-HVKNTYKTFDPVFLSPNYRFFGNV--HV  114 (506)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCC-c-cHHHHHHHHHHHHhhCCeEEEeee--Ee
Confidence            4559999999999999998653      899999999999988755544 2 335666667777777889988542  12


Q ss_pred             cCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCC
Q psy14927        868 GPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFP  901 (1074)
Q Consensus       868 d~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ip  901 (1074)
                      ..   .++.++   ..-.||+||+|||+.+..+|
T Consensus       115 G~---Dvt~ee---L~~~YDAVIlAtGA~~l~ip  142 (506)
T PTZ00188        115 GV---DLKMEE---LRNHYNCVIFCCGASEVSIP  142 (506)
T ss_pred             cC---ccCHHH---HHhcCCEEEEEcCCCCCCCC
Confidence            11   111111   12379999999999976666

>KOG0405|consensus

Probab=99.05  E-value=2.4e-10  Score=121.98  Aligned_cols=159  Identities=20%  Similarity=0.211  Sum_probs=136.2

Q ss_pred             HHhhhhhccccccccccCCceEEeccc--hhhccHHHHhcccc--------ccccccccccccccccccCCcceEEEEec
Q psy14927        368 EVDKYLEMKRNQSFRSSNTDIILPVEK--WTLLSLARVLEGIE--------YKVGKFPFAANSRAKTNNDTDGFVKVLGD  437 (1074)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (1074)
                      ++++++.+..+.|.+|+=.+||.+||.  =+-||.=-.++|-.        .+--+.-+..+|-++..+|..|.|++++.
T Consensus       300 k~~~~g~IivDeYq~Tnvp~I~avGDv~gk~~LTPVAiaagr~la~rlF~~~~~~kldY~nVp~vVFshP~igtVGLtE~  379 (478)
T KOG0405|consen  300 KTDKNGAIIVDEYQNTNVPSIWAVGDVTGKINLTPVAIAAGRKLANRLFGGGKDTKLDYENVPCVVFSHPPIGTVGLTEE  379 (478)
T ss_pred             eeCCCCCEEEeccccCCCCceEEeccccCcEecchHHHhhhhhHHHHhhcCCCCCccccccCceEEEecCCcccccCCHH
Confidence            689999999999999999999999999  34444322233332        23336678899999999999999999998


Q ss_pred             cCCCcccccccccC-C-CcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCC
Q psy14927        438 KLTDKVLGVHIIGP-G-IEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGAS  515 (1074)
Q Consensus       438 ~~~~~~lg~~~~~~-g-~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~  515 (1074)
                      +         +.++ | -++.+....|.....++......-++||+++..+.+++|+|+.|+++.|+++.++.|+++|.|
T Consensus       380 E---------Aiekyg~~~i~vy~s~F~pm~~a~~~~k~kt~mKlvc~~~~eKVvG~hm~G~~s~EilQGf~VAvKmGaT  450 (478)
T KOG0405|consen  380 E---------AIEKYGKGDIKVYTSKFNPMKYAMSGRKEKTLMKLVCAGKSEKVVGVHMCGDDSAEILQGFAVAVKMGAT  450 (478)
T ss_pred             H---------HHHHhCccceEEEecCCchhHhHhhcCCcceEEEEEEecCCCcEEEEEEecCCcHHHHhhhhhheecCcc
Confidence            8         4433 3 478888889998888888889999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhcccCCcccccccc
Q psy14927        516 CEDVARTCHAHPTVCVEKND  535 (1074)
Q Consensus       516 ~~~l~~~~~~hPt~s~e~~~  535 (1074)
                      -.|+..++..|||.++|+..
T Consensus       451 KadFD~tVaIHPTSAEElVT  470 (478)
T KOG0405|consen  451 KADFDSTVAIHPTSAEELVT  470 (478)
T ss_pred             hhhhccceeecCCCHHHhee
Confidence            99999999999999999853

>KOG1800|consensus

Probab=99.01  E-value=1.3e-09  Score=118.26  Aligned_cols=112  Identities=13%  Similarity=0.103  Sum_probs=75.7

Q ss_pred             chhhhhhccccchHHHHHHHhh-------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEE
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKI  866 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~  866 (1074)
                      +++|.|||+||||+.+|..|-+       ++||+.+.+.|.+++.-.|.+..  +..+...+...++.....|+-|.  .
T Consensus        20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAPDHpE--vKnvintFt~~aE~~rfsf~gNv--~   95 (468)
T KOG1800|consen   20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAPDHPE--VKNVINTFTKTAEHERFSFFGNV--K   95 (468)
T ss_pred             CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccCCCCcc--hhhHHHHHHHHhhccceEEEecc--e
Confidence            4469999999999999999877       79999999999988887666543  24555567777777777877772  2


Q ss_pred             ecCCeEEEEeCCCCeeEEEcCeEEEccCCCC---CCCCCCCCCCcceechhhHh
Q psy14927        867 TGPNTVTVIKSDGSTEEVKTKNILIATGSEV---TPFPGIEVDEETIVSSTGAL  917 (1074)
Q Consensus       867 id~~~~~v~~~~G~~~~i~~d~lIIATG~~p---~~ipgi~~~~~~v~t~~~~~  917 (1074)
                      +..   .+.+++   .+-.||.||||+|+.-   ..|||-.  ...+++...+.
T Consensus        96 vG~---dvsl~e---L~~~ydavvLaYGa~~dR~L~IPGe~--l~~V~Sarefv  141 (468)
T KOG1800|consen   96 VGR---DVSLKE---LTDNYDAVVLAYGADGDRRLDIPGEE--LSGVISAREFV  141 (468)
T ss_pred             ecc---cccHHH---HhhcccEEEEEecCCCCcccCCCCcc--cccceehhhhh
Confidence            211   111111   1346999999999964   2455532  24455554443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.87  E-value=8.4e-05  Score=99.06  Aligned_cols=127  Identities=15%  Similarity=0.122  Sum_probs=90.9

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchhhhHhh---------hcHHHHHHHhhc-----CCChHHH----------------HH
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHVPRMLL---------ENTDKLEKYIIQ-----SKDPVLL----------------KW   55 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~---------~~~~~~~~~~~~-----~~~~~l~----------------~~   55 (1074)
                      .+.+++.+.|.+.++|.-..+..-|..+.         ++.+++.+++.+     ++++..+                ..
T Consensus        38 ~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~  117 (1157)
T PRK11447         38 GEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQ  117 (1157)
T ss_pred             HHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHH
Confidence            36778899999999988777655444442         356666666555     3555543                45


Q ss_pred             HHHHHHhccCHHHHHHHHHHhhCh--h--hhh----hH-hhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhcCCh
Q psy14927         56 WAQYIESTEDMDLAMKYYEEARDY--L--SMV----RV-LCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQF  121 (1074)
Q Consensus        56 ~a~~~e~~~~~~~A~~~y~~a~d~--~--~~v----r~-l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~g~~  121 (1074)
                      .|+.+...|++++|+++|.++=.-  .  .+.    +. ....|++++|.+..+     .+++......+|+.+...|++
T Consensus       118 ~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~  197 (1157)
T PRK11447        118 QARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRR  197 (1157)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCH
Confidence            577888999999999999985322  1  211    11 123488999988765     367778899999999999999


Q ss_pred             HHHHHHHHHhC
Q psy14927        122 DEAIHFYSVAG  132 (1074)
Q Consensus       122 ~~Ai~~y~~a~  132 (1074)
                      ++|++.|.++-
T Consensus       198 ~eAl~~l~~~~  208 (1157)
T PRK11447        198 DEGFAVLEQMA  208 (1157)
T ss_pred             HHHHHHHHHHh
Confidence            99999998863

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.86  E-value=5e-09  Score=110.80  Aligned_cols=140  Identities=14%  Similarity=0.082  Sum_probs=85.7

Q ss_pred             hhhccccchHHHHHHHhh------hhhhhccccccccchh---------h-------------hhh---------hhhHH
Q psy14927        798 LNTLGNCAAVQANYHLAT------KLFTQAGDKGVKLNLE---------T-------------MMG---------TKSAA  840 (1074)
Q Consensus       798 viiGgG~AGl~aA~~la~------~l~e~~~~~g~~~~~~---------~-------------~~~---------~~~~~  840 (1074)
                      +||||||+|+++|..|.+      +++|+.+..|+.+...         .             +..         .....
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS   80 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence            589999999999999998      6888877776644210         0             000         00011


Q ss_pred             HhhhhhhHHHHhhhCCeEEEee-eEEEec--CCeEEEEeCCCCeeEEEcCeEEEccCCC-CCCCCCCCC-CCcceechhh
Q psy14927        841 VKALTGGIAHLFKSNKVTQLNG-HGKITG--PNTVTVIKSDGSTEEVKTKNILIATGSE-VTPFPGIEV-DEETIVSSTG  915 (1074)
Q Consensus       841 ~~~l~~~~~~~l~~~gV~~~~g-~v~~id--~~~~~v~~~~G~~~~i~~d~lIIATG~~-p~~ipgi~~-~~~~v~t~~~  915 (1074)
                      ..++..++....+++++++.++ +|+.+.  .+.+.|+++++  .++.+|+||+|||.. .+.+|.+++ .....+++.+
T Consensus        81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~--~~~~a~~VVlAtG~~~~p~~p~~~g~~~~~~~h~~~  158 (203)
T PF13738_consen   81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDG--RTIRADRVVLATGHYSHPRIPDIPGSAFRPIIHSAD  158 (203)
T ss_dssp             HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS---EEEEEEEEE---SSCSB---S-TTGGCSEEEEGGG
T ss_pred             HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEec--ceeeeeeEEEeeeccCCCCccccccccccceEehhh
Confidence            2445667888888899998887 466664  34588999888  789999999999973 233455555 3335666655


Q ss_pred             HhcchH------------------hhHHhhcCCcEEEEecCC
Q psy14927        916 ALSLKK------------------GSVWGRLGAEVTAIEFMN  939 (1074)
Q Consensus       916 ~~~~~~------------------A~~l~~~G~~Vtlv~~~~  939 (1074)
                      +.....                  +..|.+.|.+||++.|++
T Consensus       159 ~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~  200 (203)
T PF13738_consen  159 WRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP  200 (203)
T ss_dssp             -STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred             cCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence            544322                  666677788888888775

...

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.83  E-value=2.3e-07  Score=102.82  Aligned_cols=211  Identities=18%  Similarity=0.255  Sum_probs=134.2

Q ss_pred             EEEee-eEE---EecCCe-EE--EEeCCCCeeEEEcCeEEEccCCCCCCCCCCC-CCCcceechhhHhcchH--------
Q psy14927        858 TQLNG-HGK---ITGPNT-VT--VIKSDGSTEEVKTKNILIATGSEVTPFPGIE-VDEETIVSSTGALSLKK--------  921 (1074)
Q Consensus       858 ~~~~g-~v~---~id~~~-~~--v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~-~~~~~v~t~~~~~~~~~--------  921 (1074)
                      .+++| .|+   .++.+. ..  +.+.++  ..+.++.|||+||.+|..+|.+. ..+..++++.+++....        
T Consensus       113 ~~rfg~~V~~i~~~~~d~~~~~~~~t~~~--~~y~ar~lVlg~G~~P~IP~~f~~l~~~~vfHss~~~~~~~~~~~~~~V  190 (436)
T COG3486         113 SLRFGEEVTDISSLDGDAVVRLFVVTANG--TVYRARNLVLGVGTQPYIPPCFRSLIGERVFHSSEYLERHPELLQKRSV  190 (436)
T ss_pred             ccccCCeeccccccCCcceeEEEEEcCCC--cEEEeeeEEEccCCCcCCChHHhCcCccceeehHHHHHhhHHhhcCceE
Confidence            35556 455   444332 22  444555  58999999999999985333322 12356888777774333        


Q ss_pred             ---------hhHHhhc-------CCcEEEEecCCccCCCC--------CCHHHHHHH-----------------------
Q psy14927        922 ---------GSVWGRL-------GAEVTAIEFMNAIGGMG--------IDGEVAKQF-----------------------  954 (1074)
Q Consensus       922 ---------A~~l~~~-------G~~Vtlv~~~~~~~~~~--------~~~~~~~~~-----------------------  954 (1074)
                               |+.+..+       ..++..+.|+..+.+..        |.|+..+.+                       
T Consensus       191 ~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~  270 (436)
T COG3486         191 TVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGIS  270 (436)
T ss_pred             EEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccC
Confidence                     4444332       23577888888776311        233333222                       


Q ss_pred             ------------HHHH--HhCCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEcCEEEEccCCcccCC-ccCcc
Q psy14927        955 ------------QRIL--GKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTH-NLGLE 1018 (1074)
Q Consensus       955 ------------~~~l--~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~-~l~l~ 1018 (1074)
                                  ++.+  .+.+|.++.++.+..++..+++ +.+.+.... +|+.+++++|.||+|||++.... ++..-
T Consensus       271 ~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~-~~~~~t~~~D~vIlATGY~~~~P~fL~~l  349 (436)
T COG3486         271 FDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRHHE-TGELETVETDAVILATGYRRAVPSFLEGL  349 (436)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceEEEEEeecc-CCCceEEEeeEEEEecccccCCchhhhhH
Confidence                        1111  2357999999999999998877 677766644 68889999999999999985444 53222


Q ss_pred             ccCcccCCCCCeeeCCCCCCCC-----CCEEEecccCCC-----CCcHHHHHHHHHHHHHHhhC
Q psy14927       1019 EIGIEKDEKGRVPVNSRFQTVI-----PNIFAIGDCIHG-----PMLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus      1019 ~~gl~ld~~G~I~Vd~~~~ts~-----~~IyAiGD~~~~-----~~~~~~A~~~G~~aA~~I~~ 1072 (1074)
                      ...+.+|++|...|+..++...     -.||+-|-+.+.     |.+...|.+.+.++ +.|+|
T Consensus       350 ~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~htHGig~pdLsl~a~Raa~I~-~~L~g  412 (436)
T COG3486         350 ADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHTHGIGAPDLSLGAWRAAVIL-NSLLG  412 (436)
T ss_pred             HHhhcccccCCeEecCceeeecCCCCcceEEEecccccccccCCccchHHHHHHHHHH-HHHhC
Confidence            2346789999999998776321     249999977552     55555566555543 44444

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=98.76  E-value=6.4e-08  Score=110.18  Aligned_cols=149  Identities=25%  Similarity=0.313  Sum_probs=86.6

Q ss_pred             EEee-eEEEecCC------eEEEEe--CCCCeeEEEcCeEEEccCCCCCCCCC-CCC-C-CcceechhhHhcchH-----
Q psy14927        859 QLNG-HGKITGPN------TVTVIK--SDGSTEEVKTKNILIATGSEVTPFPG-IEV-D-EETIVSSTGALSLKK-----  921 (1074)
Q Consensus       859 ~~~g-~v~~id~~------~~~v~~--~~G~~~~i~~d~lIIATG~~p~~ipg-i~~-~-~~~v~t~~~~~~~~~-----  921 (1074)
                      +.+| +|+.|++.      .++|.+  .+|...++.++.||||||..|. +|. ... . ...++++.+++....     
T Consensus       112 v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~-iP~~~~~~~~~~~v~Hss~~~~~~~~~~~~  190 (341)
T PF13434_consen  112 VRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPR-IPEWFQDLPGSPRVFHSSEYLSRIDQSLAG  190 (341)
T ss_dssp             EEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE----GGGGGGTT-TTEEEGGGHHHHHT-----
T ss_pred             eEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCC-CCcchhhcCCCCCEEEehHhhhccccccCC
Confidence            5555 67776542      367766  3555579999999999998874 343 221 1 367888877766542     


Q ss_pred             ---------------hhHHhhcC--CcEEEEecCCccCC--------CCCCHHHHHHH-----------H----------
Q psy14927        922 ---------------GSVWGRLG--AEVTAIEFMNAIGG--------MGIDGEVAKQF-----------Q----------  955 (1074)
Q Consensus       922 ---------------A~~l~~~G--~~Vtlv~~~~~~~~--------~~~~~~~~~~~-----------~----------  955 (1074)
                                     +..|.+.+  .+|+++.|++.+.+        ..++|+..+.+           .          
T Consensus       191 ~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~  270 (341)
T PF13434_consen  191 KRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTNYGG  270 (341)
T ss_dssp             EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSE
T ss_pred             CeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCC
Confidence                           23333344  48999999987652        11334332222           1          


Q ss_pred             ---------------H-HHHhCCCEEEeCceEEEEEecCC-eEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927        956 ---------------R-ILGKQGMQFKLGTKVTGASKSGD-NITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus       956 ---------------~-~l~~~gV~i~~~~~v~~i~~~~~-~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
                                     + ...+..+.++.++.|..++..++ ++.+.+.+.. +++..++++|.||+|||++
T Consensus       271 i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~-~~~~~~~~~D~VilATGy~  340 (341)
T PF13434_consen  271 IDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRHRQ-TGEEETLEVDAVILATGYR  340 (341)
T ss_dssp             B-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEEEEEETT-T--EEEEEESEEEE---EE
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEECC-CCCeEEEecCEEEEcCCcc
Confidence                           1 11233589999999999998874 7888888755 6778899999999999975

>PLN03077 Protein ECB2; Provisional

Probab=98.60  E-value=0.0012  Score=85.77  Aligned_cols=135  Identities=13%  Similarity=0.131  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHhh---------CHHHHHHHHHHcCCHHHHHHHHHh------cCCcHHHH-HHHHHH
Q psy14927        626 LLKWWAQYIESTEDMDLAMKYYEEAR---------DYLSMVRVLCFLQDFSRAAELANA------SGDTAAAY-HLARQY  689 (1074)
Q Consensus       626 l~~~~a~~~e~~~~~~~A~~~y~~ag---------~~~~ai~~~~~~~~~~~a~~v~~~------~~~~~~~~-~~A~~~  689 (1074)
                      .+.....-+-.+|+.++|.++|.+--         -+...+..+.+.+++++|.++.+.      ..+....+ -+...|
T Consensus       556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l  635 (857)
T PLN03077        556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL  635 (857)
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence            33334444556788999999997542         234467778999999999887732      12333444 678888


Q ss_pred             HhcCCHHHHHHHHHHcC-CHHHHH--------HHhccHHHHHHHHHHhC--CcccHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy14927        690 ENSGQFDEAIHFYSVAG-SCGNAV--------RLCGQLDAVESIASELN--VQSDQDLILKCASYFARREHHDRAVQMYA  758 (1074)
Q Consensus       690 ~~~g~~~~A~~~~~kag-~~~~Av--------~ma~~w~~a~~~A~~~~--~~~~~~~~~~~a~~~~~~~~~~~Ai~~y~  758 (1074)
                      ...|++++|++++-+.. .|...+        .+.++.+.+.+.+++..  .+.....             +..-...|.
T Consensus       636 ~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~-------------y~ll~n~ya  702 (857)
T PLN03077        636 GRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGY-------------YILLCNLYA  702 (857)
T ss_pred             HhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch-------------HHHHHHHHH
Confidence            89999999999988763 333222        01233333333333321  1112222             334445677


Q ss_pred             HhCCHHHHHHHHHHc
Q psy14927        759 IARRYDQALSLIQTK  773 (1074)
Q Consensus       759 ~ag~~~~Ai~~~~~~  773 (1074)
                      .+|+|+++.++-...
T Consensus       703 ~~g~~~~a~~vr~~M  717 (857)
T PLN03077        703 DAGKWDEVARVRKTM  717 (857)
T ss_pred             HCCChHHHHHHHHHH
Confidence            888888887765444

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.59  E-value=1.8e-05  Score=105.32  Aligned_cols=314  Identities=16%  Similarity=0.121  Sum_probs=161.9

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchhhh---------------------Hhh--hcHHHHHHHhhc-----CCChHHHHHHH
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHVPR---------------------MLL--ENTDKLEKYIIQ-----SKDPVLLKWWA   57 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~---------------------~~~--~~~~~~~~~~~~-----~~~~~l~~~~a   57 (1074)
                      +..+|++++|+..|+++-..+..-+.                     .++  ++++++..+..+     ++++..+..+|
T Consensus       313 ~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg  392 (1157)
T PRK11447        313 YSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLG  392 (1157)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            45678888888888877654322110                     111  245444444443     35566777778


Q ss_pred             HHHHhccCHHHHHHHHHHhhCh--------hhhhhHhhccCCHHHHHHHHHhcCC--------------hHHHHHHHHHH
Q psy14927         58 QYIESTEDMDLAMKYYEEARDY--------LSMVRVLCFLQDFSRAAELANASGD--------------TAAAYHLARQY  115 (1074)
Q Consensus        58 ~~~e~~~~~~~A~~~y~~a~d~--------~~~vr~l~~~~~~~~a~~i~~~~~~--------------~~~~~~la~~~  115 (1074)
                      ..+...|++++|+++|.++-..        ..+.+++ ..+++++|....+.-..              ......+|+.+
T Consensus       393 ~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~-~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~  471 (1157)
T PRK11447        393 DVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY-RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEAL  471 (1157)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            8888888888888888876432        1223333 23456666655442110              11233566777


Q ss_pred             HhcCChHHHHHHHHHhCChH--------HHHHHHHHhCchHHHHHHh---hh-c--CchhHHHHHHHHcc-CChhHHHHH
Q psy14927        116 ENSGQFDEAIHFYSVAGSCG--------NAVRLCKEQALDDQLWNLA---LS-A--GPSEQIEAATYLET-IEPDKAVLL  180 (1074)
Q Consensus       116 ~~~g~~~~Ai~~y~~a~~~~--------~A~~la~~~~~~~~~~~l~---~~-~--~~~~~~~~A~~~e~-~~~~~A~~l  180 (1074)
                      ...|++++|++.|.++-..+        .-..+..+.|..++.....   .. .  .++.....+.++.. +++++|..+
T Consensus       472 ~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~  551 (1157)
T PRK11447        472 ENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAH  551 (1157)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence            77888888877766652210        0111223333333333321   11 1  11223334455544 445555555


Q ss_pred             HH-------------------------------HhCChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhh
Q psy14927        181 YH-------------------------------KAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGV  229 (1074)
Q Consensus       181 y~-------------------------------kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~  229 (1074)
                      +.                               ..|++.+|+.++.+.+. +..  .++.-..++.+.|+.++++.+   
T Consensus       552 l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~-~~~--~~~~La~~~~~~g~~~~A~~~---  625 (1157)
T PRK11447        552 LNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPP-STR--IDLTLADWAQQRGDYAAARAA---  625 (1157)
T ss_pred             HHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCC-Cch--HHHHHHHHHHHcCCHHHHHHH---
Confidence            44                               44555555554432111 000  011112223344444333332   


Q ss_pred             cchHHHHHHHHHHHhcC--CCCCChhHHHHHHHHHHccCCHHHHHHHHHHH--------------HhHHHHhhcCHHHHH
Q psy14927        230 SRMKEIYVMAANYLQSS--DWKSQPELLKSIISFYSKGKAPHLLANFYVSC--------------AQVEIDEFGNYEKGL  293 (1074)
Q Consensus       230 ~r~~~l~~~aa~yl~~~--~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~--------------a~~ei~e~~~y~~a~  293 (1074)
                                   ++..  ....++.....+..+|...|.+++|...+..+              +... ..-|+|++|.
T Consensus       626 -------------y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~-~~~g~~~eA~  691 (1157)
T PRK11447        626 -------------YQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAW-AALGDTAAAQ  691 (1157)
T ss_pred             -------------HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHH-HhCCCHHHHH
Confidence                         2221  12334566666777788888888877655544              3333 4567777777


Q ss_pred             HHHHHHHHHHHhcCCCchHHHHHHHHH-HHHHHHHhhcCChHHHhhHHHHHHH
Q psy14927        294 GALNEAKRCLLKHNDSMYETLKSSVVE-KLAEVEIDEFGNYEKGLGALNEAKR  345 (1074)
Q Consensus       294 ~~l~~a~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~  345 (1074)
                      ..+..++....+.    +..+...+.+ ....++.+ .|+++.|+..|+++-.
T Consensus       692 ~~~~~al~~~~~~----~~~~~~a~~~~~~a~~~~~-~G~~~~A~~~y~~Al~  739 (1157)
T PRK11447        692 RTFNRLIPQAKSQ----PPSMESALVLRDAARFEAQ-TGQPQQALETYKDAMV  739 (1157)
T ss_pred             HHHHHHhhhCccC----CcchhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHh
Confidence            7766655433221    1122233333 23566667 6999999999988843

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.58  E-value=1.5e-07  Score=111.19  Aligned_cols=149  Identities=18%  Similarity=0.132  Sum_probs=96.3

Q ss_pred             chhhhhhccccchHHHHHHHhh------hhhhhccccccccchhhh-----------------hh---hhhHHHhhhhhh
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT------KLFTQAGDKGVKLNLETM-----------------MG---TKSAAVKALTGG  847 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~------~l~e~~~~~g~~~~~~~~-----------------~~---~~~~~~~~l~~~  847 (1074)
                      +.+|+|||||++|+.+|+.|.+      .+||+.+..|+.+++...                 +.   ........+..+
T Consensus         8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y   87 (443)
T COG2072           8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDY   87 (443)
T ss_pred             cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHHH
Confidence            5569999999999999999999      689999888886533211                 10   000001124445


Q ss_pred             HHHHhhhCCeE----EEee-eEEEec--CCeEEEEeCCCCeeEEEcCeEEEccCCC--C--CCCCCCCCCCcceechhhH
Q psy14927        848 IAHLFKSNKVT----QLNG-HGKITG--PNTVTVIKSDGSTEEVKTKNILIATGSE--V--TPFPGIEVDEETIVSSTGA  916 (1074)
Q Consensus       848 ~~~~l~~~gV~----~~~g-~v~~id--~~~~~v~~~~G~~~~i~~d~lIIATG~~--p--~~ipgi~~~~~~v~t~~~~  916 (1074)
                      +...+..++++    |... ++...+  ....+|++++|...++.+|.||+|||-.  |  +.++|.......++++.++
T Consensus        88 ~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~~f~g~~~HS~~~  167 (443)
T COG2072          88 IKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRILHSADW  167 (443)
T ss_pred             HHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCccCCCceEEchhcC
Confidence            56666666544    3333 222222  2467888888744347799999999973  3  3455555444456666665


Q ss_pred             hcchH------------------hhHHhhcCCcEEEEecCCccC
Q psy14927        917 LSLKK------------------GSVWGRLGAEVTAIEFMNAIG  942 (1074)
Q Consensus       917 ~~~~~------------------A~~l~~~G~~Vtlv~~~~~~~  942 (1074)
                      .+...                  +..|.+.|.+||++.|++...
T Consensus       168 ~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~  211 (443)
T COG2072         168 PNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHI  211 (443)
T ss_pred             CCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCce
Confidence            54433                  667788899999999987543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=98.52  E-value=6.5e-05  Score=93.54  Aligned_cols=72  Identities=15%  Similarity=0.157  Sum_probs=51.9

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccchh------hhHh--hhcHHHHHHHhhc-----CCChHHHHHHHHHHHhccCHHHHHH
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQHV------PRML--LENTDKLEKYIIQ-----SKDPVLLKWWAQYIESTEDMDLAMK   71 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~~~------~~~~--~~~~~~~~~~~~~-----~~~~~l~~~~a~~~e~~~~~~~A~~   71 (1074)
                      .+...|+|++|+..|+++-......      ...|  +++|.++.+...+     ++..+.|...|..+...|++++|..
T Consensus       136 ~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~  215 (615)
T TIGR00990       136 KAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALL  215 (615)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            3456799999999999987654331      1122  2577766665544     5667788889999999999999988


Q ss_pred             HHHHh
Q psy14927         72 YYEEA   76 (1074)
Q Consensus        72 ~y~~a   76 (1074)
                      .|..+
T Consensus       216 ~~~~~  220 (615)
T TIGR00990       216 DLTAS  220 (615)
T ss_pred             HHHHH
Confidence            76543

>KOG1399|consensus

Probab=98.45  E-value=8.2e-07  Score=103.48  Aligned_cols=125  Identities=17%  Similarity=0.108  Sum_probs=79.9

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchh--------hh------------------h--hhhh--
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLE--------TM------------------M--GTKS--  838 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~--------~~------------------~--~~~~--  838 (1074)
                      .++|+|||+|||||.+|..|.+     ++||+.+..||.+.+.        .+                  +  ....  
T Consensus         6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~   85 (448)
T KOG1399|consen    6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRY   85 (448)
T ss_pred             CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCccc
Confidence            4559999999999999999999     8999999888866444        10                  0  0000  


Q ss_pred             -HHHhhhhhhHHHHhhhCCe--EEEee-eEEEecC---CeEEEEeCCCCe--eEEEcCeEEEccCCCC-CCCCCCCCC--
Q psy14927        839 -AAVKALTGGIAHLFKSNKV--TQLNG-HGKITGP---NTVTVIKSDGST--EEVKTKNILIATGSEV-TPFPGIEVD--  906 (1074)
Q Consensus       839 -~~~~~l~~~~~~~l~~~gV--~~~~g-~v~~id~---~~~~v~~~~G~~--~~i~~d~lIIATG~~p-~~ipgi~~~--  906 (1074)
                       ....++..++..+++.+++  .+.++ .|..++.   +...|.+.++..  .+.-||.|++|||-.. +.+|-+++.  
T Consensus        86 ~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~~~  165 (448)
T KOG1399|consen   86 FPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGPGI  165 (448)
T ss_pred             CCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCCch
Confidence             0113566677788887775  34444 3444443   356676655432  5788999999999874 334444331  


Q ss_pred             ---CcceechhhHhc
Q psy14927        907 ---EETIVSSTGALS  918 (1074)
Q Consensus       907 ---~~~v~t~~~~~~  918 (1074)
                         ...++++.++..
T Consensus       166 ~~f~G~~iHS~~Yk~  180 (448)
T KOG1399|consen  166 ESFKGKIIHSHDYKS  180 (448)
T ss_pred             hhcCCcceehhhccC
Confidence               123556666553

>KOG4716|consensus

Probab=98.44  E-value=7.8e-07  Score=95.19  Aligned_cols=153  Identities=19%  Similarity=0.195  Sum_probs=99.2

Q ss_pred             hhccccccccccCCceEEeccchhh---ccHHHHhcc-------ccccccccccccccccccccCCcceEEEEeccCCCc
Q psy14927        373 LEMKRNQSFRSSNTDIILPVEKWTL---LSLARVLEG-------IEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDK  442 (1074)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (1074)
                      +.+..+..=+|+...||.+||-.-+   ||.=-.+.|       .....-..-|+-++-.+..-=+-|-+++++.+.   
T Consensus       319 ~KI~v~~~e~t~vp~vyAvGDIl~~kpELTPvAIqsGrlLa~Rlf~gs~q~~dy~~V~TTVFTPLEy~c~GlsEE~A---  395 (503)
T KOG4716|consen  319 GKIPVDDEEATNVPYVYAVGDILEDKPELTPVAIQSGRLLARRLFAGSTQLMDYDDVATTVFTPLEYGCVGLSEEDA---  395 (503)
T ss_pred             CccccChHHhcCCCceEEecceecCCcccchhhhhhchHHHHHHhcCcceeeeccCCceeeecchhccccCCCHHHH---
Confidence            3444555668899999999997222   222111222       222222333444444444444555555554441   


Q ss_pred             ccccccccCC-CcEEEEeeccCccchhhhcC-CCcceEEEEEECC-CCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHH
Q psy14927        443 VLGVHIIGPG-IEYKVGKFPFAANSRAKTNN-DTDGFVKVLGDKL-TDKVLGVHIIGPAAGELINEAVLAMEYGASCEDV  519 (1074)
Q Consensus       443 ~lg~~~~~~g-~~~~v~~~~~~~~~ra~~~~-~~~G~~Kli~~~~-~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l  519 (1074)
                           +..-| .++++....|....-.+... ...-++|+++.++ +.+|+|.|++||+|+|+|+.++.|++.|+|..+|
T Consensus       396 -----i~k~g~dnievfH~~f~P~E~~ipqrd~~~CY~K~vc~r~~~qkv~G~H~lgPnAgEV~QGfaaAlk~glt~~~l  470 (503)
T KOG4716|consen  396 -----IEKYGEDNIEVFHSYFKPLEYTIPQRDVRHCYLKAVCERDEDQKVLGLHILGPNAGEVIQGFAAALKCGLTKKDL  470 (503)
T ss_pred             -----HHHhCcccEEEeeccccceEEEcccccCCceEEEEeecccCCceEEEEEEecCchhHHHHHHHHHHHhcccHHHH
Confidence                 11112 23555555555444433333 3446779999886 6799999999999999999999999999999999


Q ss_pred             hhhcccCCcccccc
Q psy14927        520 ARTCHAHPTVCVEK  533 (1074)
Q Consensus       520 ~~~~~~hPt~s~e~  533 (1074)
                      .++|.+|||.+++.
T Consensus       471 ~ntigIHPt~aE~F  484 (503)
T KOG4716|consen  471 DNTIGIHPTTAEEF  484 (503)
T ss_pred             hhcccccccchhhe
Confidence            99999999999886

>KOG4626|consensus

Probab=98.41  E-value=1.7e-05  Score=90.90  Aligned_cols=82  Identities=16%  Similarity=0.086  Sum_probs=65.3

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHhhC--------hhhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHH
Q psy14927         50 PVLLKWWAQYIESTEDMDLAMKYYEEARD--------YLSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYE  116 (1074)
Q Consensus        50 ~~l~~~~a~~~e~~~~~~~A~~~y~~a~d--------~~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~  116 (1074)
                      +.-...+|..+.+.+.|+.|..||.+|-.        +.++.-+|.+.|++|.|..-.+     .++=..+.+.+|.-+.
T Consensus       252 ~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALk  331 (966)
T KOG4626|consen  252 LDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALK  331 (966)
T ss_pred             hHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHH
Confidence            33455668888999999999999999644        3555666889999999987655     3455678889999999


Q ss_pred             hcCChHHHHHHHHHh
Q psy14927        117 NSGQFDEAIHFYSVA  131 (1074)
Q Consensus       117 ~~g~~~~Ai~~y~~a  131 (1074)
                      ..|++.+|+.+|-++
T Consensus       332 d~G~V~ea~~cYnka  346 (966)
T KOG4626|consen  332 DKGSVTEAVDCYNKA  346 (966)
T ss_pred             hccchHHHHHHHHHH
Confidence            999999999988653

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=98.38  E-value=3.1e-06  Score=94.38  Aligned_cols=79  Identities=15%  Similarity=0.277  Sum_probs=59.0

Q ss_pred             HHhhcCCcEEEEecCCccCCC-CCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEE
Q psy14927        924 VWGRLGAEVTAIEFMNAIGGM-GIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDAL 1002 (1074)
Q Consensus       924 ~l~~~G~~Vtlv~~~~~~~~~-~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~v 1002 (1074)
                      ++.++|.+-. .....++++. .-...+.+.+...+++.||+++++++|.+|+.++.+..+.+.+      +.++.||.+
T Consensus        87 ~~e~~Gi~~~-e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~------g~~i~~d~l  159 (408)
T COG2081          87 WVEGLGIALK-EEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSS------GETVKCDSL  159 (408)
T ss_pred             HHHhcCCeeE-EccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCC------CCEEEccEE
Confidence            5567776533 3344556522 3346788999999999999999999999999976566665444      448999999


Q ss_pred             EEccCCc
Q psy14927       1003 LVCVGRR 1009 (1074)
Q Consensus      1003 i~a~G~~ 1009 (1074)
                      |+|+|-.
T Consensus       160 ilAtGG~  166 (408)
T COG2081         160 ILATGGK  166 (408)
T ss_pred             EEecCCc
Confidence            9999943

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.37  E-value=0.00012  Score=85.76  Aligned_cols=105  Identities=16%  Similarity=0.107  Sum_probs=60.8

Q ss_pred             hhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhCh-------
Q psy14927          7 MKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDY-------   79 (1074)
Q Consensus         7 ~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~-------   79 (1074)
                      ...|++++|+.+|+++-..+.                    ++...+..+|..+...|++++|.+.|.++-..       
T Consensus        46 ~~~~~~~~A~~~~~~al~~~p--------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~  105 (389)
T PRK11788         46 LLNEQPDKAIDLFIEMLKVDP--------------------ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ  105 (389)
T ss_pred             HhcCChHHHHHHHHHHHhcCc--------------------ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH
Confidence            345777777777777764442                    23445556666666666666666666554321       


Q ss_pred             -----hhhhhHhhccCCHHHHHHHHHhc-----CChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927         80 -----LSMVRVLCFLQDFSRAAELANAS-----GDTAAAYHLARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus        80 -----~~~vr~l~~~~~~~~a~~i~~~~-----~~~~~~~~la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                           ..+..+|...|++++|.++..+.     .+..+...++..|.+.|++++|++.|.+.
T Consensus       106 ~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  167 (389)
T PRK11788        106 RLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERL  167 (389)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence                 22244566666666666654421     23445556666666666666666665543

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.35  E-value=6.2e-06  Score=91.95  Aligned_cols=147  Identities=22%  Similarity=0.254  Sum_probs=115.3

Q ss_pred             hhHHHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcCCCCCChh
Q psy14927        174 PDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPE  253 (1074)
Q Consensus       174 ~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~~~~~~~~  253 (1074)
                      |.+|++.|..+|++.+|.+.+.+             |.+|..+.++..         .....|..|++.+...+++.-..
T Consensus        38 y~~Aa~~fk~~~~~~~A~~ay~k-------------Aa~~~~~~~~~~---------~Aa~~~~~Aa~~~k~~~~~~Ai~   95 (282)
T PF14938_consen   38 YEKAANCFKLAKDWEKAAEAYEK-------------AADCYEKLGDKF---------EAAKAYEEAANCYKKGDPDEAIE   95 (282)
T ss_dssp             HHHHHHHHHHTT-CHHHHHHHHH-------------HHHHHHHTT-HH---------HHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHhccchhHHHHHH-------------HHHHHHHcCCHH---------HHHHHHHHHHHHHHhhCHHHHHH
Confidence            46788889999999999999887             577777777653         33455788888888876666667


Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHhHHHHhh-cCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhcCC
Q psy14927        254 LLKSIISFYSKGKAPHLLANFYVSCAQVEIDEF-GNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGN  332 (1074)
Q Consensus       254 ~~~~i~~~Y~k~~~~~~aa~~~~~~a~~ei~e~-~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (1074)
                      .+.+++.+|+..|.+..+++.+..+|..- ++. |+|++|+..|..|...++..+..   ............+++. .|+
T Consensus        96 ~~~~A~~~y~~~G~~~~aA~~~~~lA~~y-e~~~~d~e~Ai~~Y~~A~~~y~~e~~~---~~a~~~~~~~A~l~~~-l~~  170 (282)
T PF14938_consen   96 CYEKAIEIYREAGRFSQAAKCLKELAEIY-EEQLGDYEKAIEYYQKAAELYEQEGSP---HSAAECLLKAADLYAR-LGR  170 (282)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH-CCTT--HHHHHHHHHHHHHHHHHTT-H---HHHHHHHHHHHHHHHH-TT-
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHHCCCh---hhHHHHHHHHHHHHHH-hCC
Confidence            88889999999999999999999999998 777 99999999999999999998832   2234445566788888 699


Q ss_pred             hHHHhhHHHHHHHHH
Q psy14927        333 YEKGLGALNEAKRCL  347 (1074)
Q Consensus       333 ~~~a~~~~~~~~~~~  347 (1074)
                      |+.|+.+|.+++...
T Consensus       171 y~~A~~~~e~~~~~~  185 (282)
T PF14938_consen  171 YEEAIEIYEEVAKKC  185 (282)
T ss_dssp             HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999998854

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.30  E-value=0.0008  Score=87.21  Aligned_cols=317  Identities=15%  Similarity=0.128  Sum_probs=180.0

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchh---------hhHhh--hcHHHHHHHhhcC--CChHHHHHHHHHHHhccCHHHHHHH
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHV---------PRMLL--ENTDKLEKYIIQS--KDPVLLKWWAQYIESTEDMDLAMKY   72 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~---------~~~~~--~~~~~~~~~~~~~--~~~~l~~~~a~~~e~~~~~~~A~~~   72 (1074)
                      |-..|++++|.++++.+...+.--         .+.+.  +....+..+....  .+...+..+-..+-..|+++.|.+.
T Consensus       380 l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~l  459 (1060)
T PLN03218        380 LLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRV  459 (1060)
T ss_pred             HHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHH
Confidence            456799999999999887554211         11111  2344444443332  3444555666777788999999999


Q ss_pred             HHHhhC---------hhhhhhHhhccCCHHHHHHHHHhc------CChHHHHHHHHHHHhcCChHHHHHHHHHhC-----
Q psy14927         73 YEEARD---------YLSMVRVLCFLQDFSRAAELANAS------GDTAAAYHLARQYENSGQFDEAIHFYSVAG-----  132 (1074)
Q Consensus        73 y~~a~d---------~~~~vr~l~~~~~~~~a~~i~~~~------~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~-----  132 (1074)
                      |.....         |..++..|+..|++++|.++..+-      .+......+-+.|.+.|++++|+++|....     
T Consensus       460 f~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~  539 (1060)
T PLN03218        460 LRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK  539 (1060)
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence            887643         467888899999999999887742      356677788888888999988887775542     


Q ss_pred             ----ChHHHHHHHHHhCchHHHHHHhhhc-------Cchh--HH-------------HHHHHHcc----C-----C-hhH
Q psy14927        133 ----SCGNAVRLCKEQALDDQLWNLALSA-------GPSE--QI-------------EAATYLET----I-----E-PDK  176 (1074)
Q Consensus       133 ----~~~~A~~la~~~~~~~~~~~l~~~~-------~~~~--~~-------------~~A~~~e~----~-----~-~~~  176 (1074)
                          .|..-|..+-+.|.++....+....       .|+.  +.             ++-+.|+.    +     . +-.
T Consensus       540 PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyns  619 (1060)
T PLN03218        540 PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI  619 (1060)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHH
Confidence                2444555555555555555443211       1111  00             11111110    0     0 122


Q ss_pred             HHHHHHHhCChHHHHHHHHhhccCC--cchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcCCCCCChhH
Q psy14927        177 AVLLYHKAGALHKALDLAFKLTLSN--SGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPEL  254 (1074)
Q Consensus       177 A~~ly~kaG~~~kAl~l~~~~~~~~--~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~~~~~~~~~  254 (1074)
                      .+..|.++|++.+|++++-+....+  .....+-.-+..+.+.|+.+++..+-...             ...+...+...
T Consensus       620 LI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM-------------~k~G~~pd~~t  686 (1060)
T PLN03218        620 AVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA-------------RKQGIKLGTVS  686 (1060)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH-------------HHcCCCCCHHH
Confidence            3344455555555555554432100  00011112223334444444443332221             12234556677


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHh---------------HHHHhhcCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Q psy14927        255 LKSIISFYSKGKAPHLLANFYVSCAQ---------------VEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVV  319 (1074)
Q Consensus       255 ~~~i~~~Y~k~~~~~~aa~~~~~~a~---------------~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~  319 (1074)
                      +..++..|.+.|.+++|..+|..+-.               -- -..|++++|..++.++.    +.+......--..  
T Consensus       687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy-~k~G~~eeAlelf~eM~----~~Gi~Pd~~Ty~s--  759 (1060)
T PLN03218        687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITAL-CEGNQLPKALEVLSEMK----RLGLCPNTITYSI--  759 (1060)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHH----HcCCCCCHHHHHH--
Confidence            88889999999999999888876622               11 24578888888866653    3344322111111  


Q ss_pred             HHHHHHHHhhcCChHHHhhHHHHHHH
Q psy14927        320 EKLAEVEIDEFGNYEKGLGALNEAKR  345 (1074)
Q Consensus       320 ~~~~~~~~~~~~~~~~a~~~~~~~~~  345 (1074)
                        +...+.+ .|+.+.|..++.++-.
T Consensus       760 --LL~a~~k-~G~le~A~~l~~~M~k  782 (1060)
T PLN03218        760 --LLVASER-KDDADVGLDLLSQAKE  782 (1060)
T ss_pred             --HHHHHHH-CCCHHHHHHHHHHHHH
Confidence              1245556 6999999998887754

>KOG4626|consensus

Probab=98.28  E-value=3.2e-05  Score=88.83  Aligned_cols=84  Identities=13%  Similarity=0.214  Sum_probs=49.7

Q ss_pred             hhHHHHHHHHHHccCCHHHHHHHHHH--------------HHhHHHHhhcCHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy14927        252 PELLKSIISFYSKGKAPHLLANFYVS--------------CAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSS  317 (1074)
Q Consensus       252 ~~~~~~i~~~Y~k~~~~~~aa~~~~~--------------~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~  317 (1074)
                      ++-+-++...|+-.+.++.|.++|..              .|..- +..|||++|..-+++|++.-    ....+.+.+-
T Consensus       354 adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~-kqqgnl~~Ai~~YkealrI~----P~fAda~~Nm  428 (966)
T KOG4626|consen  354 ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIY-KQQGNLDDAIMCYKEALRIK----PTFADALSNM  428 (966)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHH-HhcccHHHHHHHHHHHHhcC----chHHHHHHhc
Confidence            44455555556666666666555543              35565 78899999988888887631    1111111111


Q ss_pred             HHHHHHHHHHhhcCChHHHhhHHHHHHHH
Q psy14927        318 VVEKLAEVEIDEFGNYEKGLGALNEAKRC  346 (1074)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  346 (1074)
                      ..     .|-. +|+.+.|+.||.|+-+.
T Consensus       429 Gn-----t~ke-~g~v~~A~q~y~rAI~~  451 (966)
T KOG4626|consen  429 GN-----TYKE-MGDVSAAIQCYTRAIQI  451 (966)
T ss_pred             ch-----HHHH-hhhHHHHHHHHHHHHhc
Confidence            11     1113 78889999988887554

>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ]

Probab=98.27  E-value=3.1e-07  Score=86.88  Aligned_cols=65  Identities=37%  Similarity=0.596  Sum_probs=60.4

Q ss_pred             EeccchhhccHHHH-hccccccccccccccccccccccCCcceEEEEeccCCCcccccccccCCCc
Q psy14927        390 LPVEKWTLLSLARV-LEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPGIE  454 (1074)
Q Consensus       390 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~  454 (1074)
                      -|..|+|||||++| ++|+++++...|+..++|+...+.+.|++|++.+++|+++||.|+.+.+..
T Consensus         8 ~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~IlGa~~vg~~a~   73 (110)
T PF02852_consen    8 DPEIASVGLTEEEARKQGIDYEVVTVPFKSNDRARYYPETEGFVKLIFDKKTGRILGAQIVGPNAS   73 (110)
T ss_dssp             SSEEEEEES-HHHHHHHTSGEEEEEEEEGGEHHHHHTTTTEEEEEEEEETTTTBEEEEEEEETTHH
T ss_pred             CCceEEEccCHHHHHhccCceeeeeecccccchhcccCCcceeeEEEEEeeccceeeeeeecCchH
Confidence            38999999999999 999999999999999999999999999999999999999999999987643

; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=98.23  E-value=0.00016  Score=90.17  Aligned_cols=106  Identities=22%  Similarity=0.196  Sum_probs=71.9

Q ss_pred             cCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhC--------hh
Q psy14927          9 NGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARD--------YL   80 (1074)
Q Consensus         9 ~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d--------~~   80 (1074)
                      .+++++|++.|+++-.....                 .......+..+|..+...|++++|..+|.++-.        |.
T Consensus       307 ~~~y~~A~~~~~~al~~~~~-----------------~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~  369 (615)
T TIGR00990       307 DESYEEAARAFEKALDLGKL-----------------GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYI  369 (615)
T ss_pred             hhhHHHHHHHHHHHHhcCCC-----------------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH
Confidence            35677777777766533200                 012234566677777888888888888887532        23


Q ss_pred             hhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927         81 SMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus        81 ~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                      .+..++..+|++++|....+     .+.+....+++|..|...|++++|++.|.++
T Consensus       370 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ka  425 (615)
T TIGR00990       370 KRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKS  425 (615)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            45555777888888877654     3456677888888888888888888888766

>KOG2003|consensus

Probab=98.22  E-value=0.00013  Score=80.83  Aligned_cols=263  Identities=17%  Similarity=0.173  Sum_probs=159.2

Q ss_pred             hHHhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhh
Q psy14927          3 EEETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSM   82 (1074)
Q Consensus         3 ~~~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~   82 (1074)
                      --||..+|+++.|++...--...|.++...--.+.. +-.|++...+-.=-.+||..+.+...|..|+..        +.
T Consensus       426 a~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~-~l~flqggk~~~~aqqyad~aln~dryn~~a~~--------nk  496 (840)
T KOG2003|consen  426 AGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLC-ALRFLQGGKDFADAQQYADIALNIDRYNAAALT--------NK  496 (840)
T ss_pred             HHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhH-HHHHHhcccchhHHHHHHHHHhcccccCHHHhh--------cC
Confidence            357889999999998876666555554322111211 123344444444445566666666666655431        23


Q ss_pred             hhHhhccCCHHHHHHHHHhc-----CChHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhc
Q psy14927         83 VRVLCFLQDFSRAAELANAS-----GDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSA  157 (1074)
Q Consensus        83 vr~l~~~~~~~~a~~i~~~~-----~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~  157 (1074)
                      -.+-...|++++|.+..++.     ...++.+.++--++.+|+.++|+++|.+.|.    |                +..
T Consensus       497 gn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~----i----------------l~n  556 (840)
T KOG2003|consen  497 GNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHA----I----------------LLN  556 (840)
T ss_pred             CceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHH----H----------------HHh
Confidence            33344677777777776642     3446788999999999999999999988753    2                223


Q ss_pred             CchhHHHHHHHHcc-CChhHHHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHH
Q psy14927        158 GPSEQIEAATYLET-IEPDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIY  236 (1074)
Q Consensus       158 ~~~~~~~~A~~~e~-~~~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~  236 (1074)
                      +.+++.++|..||. .+.-+|+++|+.+..+                                         .-.++.+-
T Consensus       557 n~evl~qianiye~led~aqaie~~~q~~sl-----------------------------------------ip~dp~il  595 (840)
T KOG2003|consen  557 NAEVLVQIANIYELLEDPAQAIELLMQANSL-----------------------------------------IPNDPAIL  595 (840)
T ss_pred             hHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-----------------------------------------CCCCHHHH
Confidence            44666778888888 6677777776654310                                         01223344


Q ss_pred             HHHHHHHhcCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHhHHHHhhcCHHHHHHHHHHHHHHHHhcCCCchHHHHH
Q psy14927        237 VMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKS  316 (1074)
Q Consensus       237 ~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~  316 (1074)
                      ..++++...+      .+-+++|++|-.     .---|+..+-..  +=.+.|----..-..++++|+++..-+|....=
T Consensus       596 skl~dlydqe------gdksqafq~~yd-----syryfp~nie~i--ewl~ayyidtqf~ekai~y~ekaaliqp~~~kw  662 (840)
T KOG2003|consen  596 SKLADLYDQE------GDKSQAFQCHYD-----SYRYFPCNIETI--EWLAAYYIDTQFSEKAINYFEKAALIQPNQSKW  662 (840)
T ss_pred             HHHHHHhhcc------cchhhhhhhhhh-----cccccCcchHHH--HHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHH
Confidence            4444444433      223444444422     111233333222  234666666677788999999998888877665


Q ss_pred             HHHHHHHHHHHhhcCChHHHhhHHHHHHHHHhhccCcc
Q psy14927        317 SVVEKLAEVEIDEFGNYEKGLGALNEAKRCLLKHNDSM  354 (1074)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  354 (1074)
                      .||..  .-+-+ .|+|.+|..+|+..-   ++||..+
T Consensus       663 qlmia--sc~rr-sgnyqka~d~yk~~h---rkfpedl  694 (840)
T KOG2003|consen  663 QLMIA--SCFRR-SGNYQKAFDLYKDIH---RKFPEDL  694 (840)
T ss_pred             HHHHH--HHHHh-cccHHHHHHHHHHHH---HhCccch
Confidence            56632  22223 499999999998764   5699764

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.22  E-value=0.0013  Score=85.37  Aligned_cols=268  Identities=14%  Similarity=0.096  Sum_probs=153.1

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHhhC-----hhhhhhHhhccCCHHHHHHHHHh---c---CChHHHHHHHHHHHhcCCh
Q psy14927         53 LKWWAQYIESTEDMDLAMKYYEEARD-----YLSMVRVLCFLQDFSRAAELANA---S---GDTAAAYHLARQYENSGQF  121 (1074)
Q Consensus        53 ~~~~a~~~e~~~~~~~A~~~y~~a~d-----~~~~vr~l~~~~~~~~a~~i~~~---~---~~~~~~~~la~~~~~~g~~  121 (1074)
                      +..+-+.+...|.+++|.++|..-..     |..+++.++..|++++|.++.++   .   .+......+-..|.+.|++
T Consensus       409 ~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~v  488 (1060)
T PLN03218        409 HAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV  488 (1060)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCH
Confidence            33445667788999999999977544     56778889999999999998873   2   2556667777888888887


Q ss_pred             HHHHHH----------------------HHHhCChHHHHHHHHHh---Cc------hHHHHHHhhhcCchhHHHHHHHHc
Q psy14927        122 DEAIHF----------------------YSVAGSCGNAVRLCKEQ---AL------DDQLWNLALSAGPSEQIEAATYLE  170 (1074)
Q Consensus       122 ~~Ai~~----------------------y~~a~~~~~A~~la~~~---~~------~~~~~~l~~~~~~~~~~~~A~~~e  170 (1074)
                      ++|.++                      |.+.|++++|+++-.+.   |.      +..++........  +..+-++|+
T Consensus       489 d~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~--~deA~~lf~  566 (1060)
T PLN03218        489 DAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGA--VDRAFDVLA  566 (1060)
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence            776554                      45555566665554332   10      0011111111111  111222221


Q ss_pred             c------C---C---hhHHHHHHHHhCChHHHHHHHHhhccCC--cchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHH
Q psy14927        171 T------I---E---PDKAVLLYHKAGALHKALDLAFKLTLSN--SGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIY  236 (1074)
Q Consensus       171 ~------~---~---~~~A~~ly~kaG~~~kAl~l~~~~~~~~--~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~  236 (1074)
                      +      +   +   +-.-+..|.++|++.+|.+++......+  .....|-..+..+.+.|+.++++.+-...+.    
T Consensus       567 eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~----  642 (1060)
T PLN03218        567 EMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK----  642 (1060)
T ss_pred             HHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH----
Confidence            1      0   1   2234556777777777777766543211  0112234445556667776666655443332    


Q ss_pred             HHHHHHHhcCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHH---------------hHHHHhhcCHHHHHHHHHHHHH
Q psy14927        237 VMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSCA---------------QVEIDEFGNYEKGLGALNEAKR  301 (1074)
Q Consensus       237 ~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~a---------------~~ei~e~~~y~~a~~~l~~a~~  301 (1074)
                               .....+...+..++..|.+.+.+++|-.++..+-               ..- -..|++++|...+.++. 
T Consensus       643 ---------~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay-~k~G~~eeA~~lf~eM~-  711 (1060)
T PLN03218        643 ---------KGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC-SNAKNWKKALELYEDIK-  711 (1060)
T ss_pred             ---------cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhCCCHHHHHHHHHHHH-
Confidence                     1223444566677788888888887765555442               222 34577788877765543 


Q ss_pred             HHHhcCCCchHHHHHHHHHHHHHHHHhhcCChHHHhhHHHHHHH
Q psy14927        302 CLLKHNDSMYETLKSSVVEKLAEVEIDEFGNYEKGLGALNEAKR  345 (1074)
Q Consensus       302 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  345 (1074)
                         +.+.........    .+...|.+ .|+.+.|.+++.+...
T Consensus       712 ---~~g~~PdvvtyN----~LI~gy~k-~G~~eeAlelf~eM~~  747 (1060)
T PLN03218        712 ---SIKLRPTVSTMN----ALITALCE-GNQLPKALEVLSEMKR  747 (1060)
T ss_pred             ---HcCCCCCHHHHH----HHHHHHHH-CCCHHHHHHHHHHHHH
Confidence               333322211111    23455667 6999999998888754

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.18  E-value=0.00038  Score=88.06  Aligned_cols=316  Identities=13%  Similarity=0.061  Sum_probs=157.7

Q ss_pred             hhhcCCHHHHHHHHHHcCcccc--------hhhhHhh--hcHHHHHHHhhcCCC--hHHHHHHHHHHHhccCHHHHHHHH
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQ--------HVPRMLL--ENTDKLEKYIIQSKD--PVLLKWWAQYIESTEDMDLAMKYY   73 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~--------~~~~~~~--~~~~~~~~~~~~~~~--~~l~~~~a~~~e~~~~~~~A~~~y   73 (1074)
                      +-..++++.|.+++........        .+..+|.  ++++.+.++......  ...|...-..+-..|++++|.+.|
T Consensus       133 ~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf  212 (697)
T PLN03081        133 CIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALF  212 (697)
T ss_pred             HHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHH
Confidence            3455677777777766543221        1123332  356666666666433  335555566666778888888888


Q ss_pred             HHhhC---------h-----------------------------------hhhhhHhhccCCHHHHHHHHHh--cCChHH
Q psy14927         74 EEARD---------Y-----------------------------------LSMVRVLCFLQDFSRAAELANA--SGDTAA  107 (1074)
Q Consensus        74 ~~a~d---------~-----------------------------------~~~vr~l~~~~~~~~a~~i~~~--~~~~~~  107 (1074)
                      .....         |                                   .+++..|++.|++++|.++..+  ..+...
T Consensus       213 ~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt  292 (697)
T PLN03081        213 REMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVA  292 (697)
T ss_pred             HHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhH
Confidence            76421         2                                   2344455555555555555542  233344


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhCC---------hHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHccC---C--
Q psy14927        108 AYHLARQYENSGQFDEAIHFYSVAGS---------CGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLETI---E--  173 (1074)
Q Consensus       108 ~~~la~~~~~~g~~~~Ai~~y~~a~~---------~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~---~--  173 (1074)
                      ...+..-|.+.|++++|+++|.+...         |...+..|-+.|..+....+           .....+.+   +  
T Consensus       293 ~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i-----------~~~m~~~g~~~d~~  361 (697)
T PLN03081        293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQA-----------HAGLIRTGFPLDIV  361 (697)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHH-----------HHHHHHhCCCCCee
Confidence            44555555555555555555533210         11111111111111111111           11111222   1  


Q ss_pred             -hhHHHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchH-------------------
Q psy14927        174 -PDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMK-------------------  233 (1074)
Q Consensus       174 -~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~-------------------  233 (1074)
                       +-.-+..|.|+|++++|.+++-+....|  ..-|-.-+..+.+.|+.++++.+-......                   
T Consensus       362 ~~~~Li~~y~k~G~~~~A~~vf~~m~~~d--~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~  439 (697)
T PLN03081        362 ANTALVDLYSKWGRMEDARNVFDRMPRKN--LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS  439 (697)
T ss_pred             ehHHHHHHHHHCCCHHHHHHHHHhCCCCC--eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC
Confidence             2446778888888888888887754322  122323344445555555555444433221                   


Q ss_pred             HHHHHHHHHHhcC----CCCCChhHHHHHHHHHHccCCHHHHHHHHHHHH------------hHHHHhhcCHHHHHHHHH
Q psy14927        234 EIYVMAANYLQSS----DWKSQPELLKSIISFYSKGKAPHLLANFYVSCA------------QVEIDEFGNYEKGLGALN  297 (1074)
Q Consensus       234 ~l~~~aa~yl~~~----~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~a------------~~ei~e~~~y~~a~~~l~  297 (1074)
                      .....+-++++..    .+..+...+..++..|.++|.+++|-.++....            ... ...||++.|..++.
T Consensus       440 g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~-~~~g~~~~a~~~~~  518 (697)
T PLN03081        440 GLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTAC-RIHKNLELGRLAAE  518 (697)
T ss_pred             CcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHcCCcHHHHHHHH
Confidence            1112233333322    233333456678888889999888887765431            122 34566666665544


Q ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhcCChHHHhhHHHHHHH
Q psy14927        298 EAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGNYEKGLGALNEAKR  345 (1074)
Q Consensus       298 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  345 (1074)
                      ..    .+.+....   .  .-..+..+|.+ .|+.+.|.+++.+...
T Consensus       519 ~l----~~~~p~~~---~--~y~~L~~~y~~-~G~~~~A~~v~~~m~~  556 (697)
T PLN03081        519 KL----YGMGPEKL---N--NYVVLLNLYNS-SGRQAEAAKVVETLKR  556 (697)
T ss_pred             HH----hCCCCCCC---c--chHHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence            33    22221111   0  01133567777 6888888887776654

>KOG1920|consensus

Probab=98.17  E-value=2.5e-05  Score=96.12  Aligned_cols=154  Identities=15%  Similarity=0.110  Sum_probs=113.1

Q ss_pred             ccCHHHHHHHHHHHHHHHHH----HHHHHhhhCccchhhHHHHHHHhhh---hHHHHHHHHHHHHhhhcHHHHHHHHHHh
Q psy14927        578 KLNLETMMGTKSAAVKALTG----GIAHLFKSNKALKIITKQIILILII---YRVLLKWWAQYIESTEDMDLAMKYYEEA  650 (1074)
Q Consensus       578 ~~~w~~~~~~~~~~i~~l~~----~~~~~l~~~~i~~~~~~~~~~~~~~---~~~l~~~~a~~~e~~~~~~~A~~~y~~a  650 (1074)
                      +|.+..+.++..+-+..|..    +++..++=-.-++-|+.+..|-+..   ...++..||.++.+...|++|.-.|..+
T Consensus       886 kF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~  965 (1265)
T KOG1920|consen  886 KFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERC  965 (1265)
T ss_pred             heeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHh
Confidence            47777777777666666652    3333332222223356666654444   3378899999999999999999999999


Q ss_pred             hCHHHHHHHHHHcCCHHHHHHHHHhcCCcHHH-----HHHHHHHHhcCCHHH-HHHHHHHcCCHHHHHHH---hccHHHH
Q psy14927        651 RDYLSMVRVLCFLQDFSRAAELANASGDTAAA-----YHLARQYENSGQFDE-AIHFYSVAGSCGNAVRL---CGQLDAV  721 (1074)
Q Consensus       651 g~~~~ai~~~~~~~~~~~a~~v~~~~~~~~~~-----~~~A~~~~~~g~~~~-A~~~~~kag~~~~Av~m---a~~w~~a  721 (1074)
                      |+.++|+.+|.+.++|++|+.++.........     ..++.-|...|.+-+ |.-...-+++|++||.+   +..|++|
T Consensus       966 GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~av~ll~ka~~~~eA 1045 (1265)
T KOG1920|consen  966 GKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEAVALLCKAKEWEEA 1045 (1265)
T ss_pred             ccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHHHHHHhhHhHHHHH
Confidence            99999999999999999999999744332222     245666666666555 45555667999999988   8999999


Q ss_pred             HHHHHHhCCc
Q psy14927        722 ESIASELNVQ  731 (1074)
Q Consensus       722 ~~~A~~~~~~  731 (1074)
                      .|+|..+...
T Consensus      1046 lrva~~~~~~ 1055 (1265)
T KOG1920|consen 1046 LRVASKAKRD 1055 (1265)
T ss_pred             HHHHHhcccc
Confidence            9999999543

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=98.13  E-value=0.0002  Score=82.68  Aligned_cols=123  Identities=17%  Similarity=0.231  Sum_probs=82.0

Q ss_pred             CCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc-cc-----CCccCccc
Q psy14927        946 IDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR-PY-----THNLGLEE 1019 (1074)
Q Consensus       946 ~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~-p~-----~~~l~l~~ 1019 (1074)
                      .+..+.+.+.+.+++.|+.++.+..|.++..+++.+.....+   ++....+.+|.+|+|+|.- ..     .+-+...-
T Consensus       261 ~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~---~g~~~~l~AD~vVLAaGaw~S~gL~a~l~~i~Epi  337 (419)
T TIGR03378       261 LGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTR---NHRDIPLRADHFVLASGSFFSNGLVAEFDKIYEPI  337 (419)
T ss_pred             cHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEec---CCccceEECCEEEEccCCCcCHHHHhhcCceeeec
Confidence            346777888899999999999999999998766654433222   2323579999999999976 21     11110111


Q ss_pred             cCccc----C-----CC----------CCeeeCCCCCC-----CCCCEEEecccCCCCC------cHHHHHHHHHHHHHH
Q psy14927       1020 IGIEK----D-----EK----------GRVPVNSRFQT-----VIPNIFAIGDCIHGPM------LAHKAEDEGIVCVEG 1069 (1074)
Q Consensus      1020 ~gl~l----d-----~~----------G~I~Vd~~~~t-----s~~~IyAiGD~~~~~~------~~~~A~~~G~~aA~~ 1069 (1074)
                      .++.+    +     ..          =.|.||+.+|.     .++|+|++|-+.++..      -.-.|+..|..||.+
T Consensus       338 f~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~~~gcG~GVai~Ta~~aa~~  417 (419)
T TIGR03378       338 FGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPIFEGCGSGVAVSTALHAAEQ  417 (419)
T ss_pred             cCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCCChHhcCCCchhHHHHHHHHHHh
Confidence            12221    0     00          12678888883     3899999999887532      234788999999988


Q ss_pred             hh
Q psy14927       1070 IA 1071 (1074)
Q Consensus      1070 I~ 1071 (1074)
                      |+
T Consensus       418 i~  419 (419)
T TIGR03378       418 II  419 (419)
T ss_pred             hC
Confidence            74

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.13  E-value=0.0004  Score=86.76  Aligned_cols=126  Identities=11%  Similarity=0.117  Sum_probs=87.5

Q ss_pred             HhhhcCCHHHHHHHHHHcCccc---chhhhHh------hhcHHHHHHHhhc-----CCChHHHHHHHHHHHhccCHHHHH
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQ---QHVPRML------LENTDKLEKYIIQ-----SKDPVLLKWWAQYIESTEDMDLAM   70 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~---~~~~~~~------~~~~~~~~~~~~~-----~~~~~l~~~~a~~~e~~~~~~~A~   70 (1074)
                      ++...|++++|..+|+..-...   ..+..++      .++++.+.+.+.+     ++++..+..+|..+...|++++|.
T Consensus        51 ~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai  130 (656)
T PRK15174         51 ACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVA  130 (656)
T ss_pred             HHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Confidence            5677899999999988774322   1222222      3566666665555     577888888999999999999999


Q ss_pred             HHHHHhhC--------hhhhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927         71 KYYEEARD--------YLSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus        71 ~~y~~a~d--------~~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                      ..|.++=.        +..+.+++...|++++|....+.     +++......++ .+...|++++|++.|...
T Consensus       131 ~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~  203 (656)
T PRK15174        131 DLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARAL  203 (656)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHH
Confidence            99988643        24466778889999988876652     23444443433 467788999898888763

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.12  E-value=0.00011  Score=84.31  Aligned_cols=101  Identities=20%  Similarity=0.259  Sum_probs=55.3

Q ss_pred             eEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccC------ccccCccc-CC-CCCeeeCCCCC----
Q psy14927        970 KVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLG------LEEIGIEK-DE-KGRVPVNSRFQ---- 1037 (1074)
Q Consensus       970 ~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~------l~~~gl~l-d~-~G~I~Vd~~~~---- 1037 (1074)
                      ++..|...+.+..|.+.... ....+++++|.||.|+|..+....-.      +...|+.. |. ...|.|+++.+    
T Consensus       341 ~~~~i~~~~eg~~v~~r~rg-~~~~~~l~~~~VIn~~g~~~~~~~~s~~~L~sl~~~Gl~rpd~~~lGl~v~~~~~v~~~  419 (474)
T COG4529         341 RVVSIDREGEGRAVTYRERG-KQHEEELDVDAVINTTGPAHDNSLSSDPFLRSLGENGLARPDPPGLGLDVSDDSEVLGE  419 (474)
T ss_pred             ceeecccccCCceEEeeccc-cCccceeeeeEEEEcCCcCcCCCccchHHHHHHHhCCccccCCCCCceeeCCCCcccCC
Confidence            45566555444444444311 33457889999999999877554311      11223221 11 23456666555    


Q ss_pred             --CCCCCEEEecccCCCCC----cHHHHHHHHHHHHHHhh
Q psy14927       1038 --TVIPNIFAIGDCIHGPM----LAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1038 --ts~~~IyAiGD~~~~~~----~~~~A~~~G~~aA~~I~ 1071 (1074)
                        +..++.|++|-.+.+..    .+..-..++..+|..|+
T Consensus       420 ~g~~~~~~fa~Gplt~G~f~ei~~vP~v~~qa~~~A~~l~  459 (474)
T COG4529         420 DGERVTGLFAAGPLTRGTFWEIDGVPDVRVQAARLAAQLA  459 (474)
T ss_pred             CCccccCceeeccccCCchhhhccChHHHHHHHHHHHHHh
Confidence              35788999999887531    12233344444444443

>KOG1920|consensus

Probab=98.05  E-value=7.2e-05  Score=92.19  Aligned_cols=171  Identities=18%  Similarity=0.227  Sum_probs=131.3

Q ss_pred             ccCHHHHHHHH-----HHHHHHHHH--HHHHHhhhCccchhhHHHHHHHhhhhHHHHHHHHHHHHhhhcHHHHHHHHHHh
Q psy14927        578 KLNLETMMGTK-----SAAVKALTG--GIAHLFKSNKALKIITKQIILILIIYRVLLKWWAQYIESTEDMDLAMKYYEEA  650 (1074)
Q Consensus       578 ~~~w~~~~~~~-----~~~i~~l~~--~~~~~l~~~~i~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a  650 (1074)
                      +++...++..+     ..++--|+.  ..+.++++-.||                         +--++|..|..|..++
T Consensus       852 Dl~Lal~VAq~SqkDPkEyLP~L~el~~m~~~~rkF~ID-------------------------~~L~ry~~AL~hLs~~  906 (1265)
T KOG1920|consen  852 DLDLALLVAQKSQKDPKEYLPFLNELKKMETLLRKFKID-------------------------DYLKRYEDALSHLSEC  906 (1265)
T ss_pred             chHHHHHHHHHhccChHHHHHHHHHHhhchhhhhheeHH-------------------------HHHHHHHHHHHHHHHc
Confidence            56777666666     455555553  345566666777                         3346999999999999


Q ss_pred             h--CHHHHHHHHHHcCCHHHHHHHHHhcCC-cHHHH-HHHHHHHhcCCHHHHHHHHHHcCCHHHHHHH---hccHHHHHH
Q psy14927        651 R--DYLSMVRVLCFLQDFSRAAELANASGD-TAAAY-HLARQYENSGQFDEAIHFYSVAGSCGNAVRL---CGQLDAVES  723 (1074)
Q Consensus       651 g--~~~~ai~~~~~~~~~~~a~~v~~~~~~-~~~~~-~~A~~~~~~g~~~~A~~~~~kag~~~~Av~m---a~~w~~a~~  723 (1074)
                      |  -|+...+...+.+.+.+|..+.+-+.. ....+ ..|.||.+.+.++.|.-+|.++|+.++|+..   |++|+++..
T Consensus       907 ~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~  986 (1265)
T KOG1920|consen  907 GETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKLEKALKAYKECGDWREALS  986 (1265)
T ss_pred             CccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccHHHHHHHHHHhccHHHHHH
Confidence            9  799999999999999999988864433 22222 4599999999999999999999999999977   999999999


Q ss_pred             HHHHhCCcccHHHHHHHHHHH------------------HHcCCHHHHHHHHHHhCCHHHHHHHHHHcCC
Q psy14927        724 IASELNVQSDQDLILKCASYF------------------ARREHHDRAVQMYAIARRYDQALSLIQTKHV  775 (1074)
Q Consensus       724 ~A~~~~~~~~~~~~~~~a~~~------------------~~~~~~~~Ai~~y~~ag~~~~Ai~~~~~~~~  775 (1074)
                      +|.+..+..  +.++.+|+.+                  +--+++.+|+..|+++..|.+|+|.+.....
T Consensus       987 ~a~ql~~~~--de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~av~ll~ka~~~~eAlrva~~~~~ 1054 (1265)
T KOG1920|consen  987 LAAQLSEGK--DELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEAVALLCKAKEWEEALRVASKAKR 1054 (1265)
T ss_pred             HHHhhcCCH--HHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHHHhccc
Confidence            999874432  2233333333                  3446777999999999999999999988754

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=98.04  E-value=3.8e-06  Score=97.68  Aligned_cols=54  Identities=17%  Similarity=0.201  Sum_probs=34.8

Q ss_pred             hhhhhhHHHHhhhCCeEEEee-eEEEec--CCe-EEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        842 KALTGGIAHLFKSNKVTQLNG-HGKITG--PNT-VTVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       842 ~~l~~~~~~~l~~~gV~~~~g-~v~~id--~~~-~~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                      .++...+...+++.||+++++ +|..+.  .+. +.|.++++  .++.+|.||||||+..
T Consensus       109 ~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~--~~~~a~~vILAtGG~S  166 (409)
T PF03486_consen  109 SSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNG--GEYEADAVILATGGKS  166 (409)
T ss_dssp             HHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTT--EEEEESEEEE----SS
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCc--ccccCCEEEEecCCCC
Confidence            345555777788889999999 577763  344 77777555  6899999999999864

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.00  E-value=0.14  Score=66.29  Aligned_cols=87  Identities=20%  Similarity=0.121  Sum_probs=58.0

Q ss_pred             hcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhh----hh
Q psy14927          8 KNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLS----MV   83 (1074)
Q Consensus         8 ~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~----~v   83 (1074)
                      ..|++++|+..|+++-..+                    ++++.++..+|+++...|++++|+.+.+++-..+.    .-
T Consensus        56 ~~Gd~~~A~~~l~~Al~~d--------------------P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~  115 (987)
T PRK09782         56 KNNDEATAIREFEYIHQQV--------------------PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLE  115 (987)
T ss_pred             hCCCHHHHHHHHHHHHHhC--------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH
Confidence            3478888888888777555                    44577888888988899999999888887655432    11


Q ss_pred             hHhhccCCHHHHHHHHH-----hcCChHHHHHHHHH
Q psy14927         84 RVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQ  114 (1074)
Q Consensus        84 r~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~  114 (1074)
                      ..|..++++++|.++++     .+++.+...++|..
T Consensus       116 ~~La~i~~~~kA~~~ye~l~~~~P~n~~~~~~la~~  151 (987)
T PRK09782        116 RSLAAIPVEVKSVTTVEELLAQQKACDAVPTLRCRS  151 (987)
T ss_pred             HHHHHhccChhHHHHHHHHHHhCCCChhHHHHHHHH
Confidence            11344466666766655     24555666666665

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.00  E-value=0.0007  Score=84.58  Aligned_cols=276  Identities=13%  Similarity=0.047  Sum_probs=149.0

Q ss_pred             hhcCCHHHHHHHHHHcCcccchhhh-------Hhh--hcHHHHHHHhhc-----CCChHHHHHHHHHHHhccCHHHHHHH
Q psy14927          7 MKNGDIDRAIRMFEKAETHQQHVPR-------MLL--ENTDKLEKYIIQ-----SKDPVLLKWWAQYIESTEDMDLAMKY   72 (1074)
Q Consensus         7 ~~~g~~~eA~~~Ye~~~~~~~~~~~-------~~~--~~~~~~~~~~~~-----~~~~~l~~~~a~~~e~~~~~~~A~~~   72 (1074)
                      ...|++++|+..|+++-..+..-++       ++.  +++..+...+.+     ++++..+...++.+...|++++|..+
T Consensus        87 l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~  166 (656)
T PRK15174         87 LASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISL  166 (656)
T ss_pred             hhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHH
Confidence            3579999999999998765433322       222  366655554444     67788999999999999999999999


Q ss_pred             HHHhh----Chhh---hhhHhhccCCHHHHHHHHHh-----c-CChHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHH
Q psy14927         73 YEEAR----DYLS---MVRVLCFLQDFSRAAELANA-----S-GDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVR  139 (1074)
Q Consensus        73 y~~a~----d~~~---~vr~l~~~~~~~~a~~i~~~-----~-~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~  139 (1074)
                      |.+.-    +...   ....+...|++++|....+.     . .+......++..+.+.|++++|++.|.++-...    
T Consensus       167 ~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~----  242 (656)
T PRK15174        167 ARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG----  242 (656)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----
Confidence            97652    1111   11237788999999988774     1 222334456788889999999999887753221    


Q ss_pred             HHHHhCchHHHHHHh---hhcCc-hh-HHHHHHHHcc------CC---hhHHHHHHHHhCChHHHHHHHHhhcc--CCcc
Q psy14927        140 LCKEQALDDQLWNLA---LSAGP-SE-QIEAATYLET------IE---PDKAVLLYHKAGALHKALDLAFKLTL--SNSG  203 (1074)
Q Consensus       140 la~~~~~~~~~~~l~---~~~~~-~~-~~~~A~~~e~------~~---~~~A~~ly~kaG~~~kAl~l~~~~~~--~~~~  203 (1074)
                          .+..+.+..++   ...+. ++ ...+-.+|++      .+   +..-+.+|.+.|++.+|+..+.+.-.  +++.
T Consensus       243 ----p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~  318 (656)
T PRK15174        243 ----LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLP  318 (656)
T ss_pred             ----CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence                00001111111   00000 00 0001111111      00   12224455555666666655544221  1111


Q ss_pred             hHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHhHHH
Q psy14927        204 LVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSCAQVEI  283 (1074)
Q Consensus       204 ~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~a~~ei  283 (1074)
                      . .+..-..++.+.|+.+.++.....         +..    . ...++.........|...|.+++|...|.......=
T Consensus       319 ~-a~~~La~~l~~~G~~~eA~~~l~~---------al~----~-~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P  383 (656)
T PRK15174        319 Y-VRAMYARALRQVGQYTAASDEFVQ---------LAR----E-KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA  383 (656)
T ss_pred             H-HHHHHHHHHHHCCCHHHHHHHHHH---------HHH----h-CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence            0 111123444556666554443211         110    0 011222223345567788888888888777644310


Q ss_pred             -HhhcCHHHHHHHHHHHHHHHHh
Q psy14927        284 -DEFGNYEKGLGALNEAKRCLLK  305 (1074)
Q Consensus       284 -~e~~~y~~a~~~l~~a~~~l~~  305 (1074)
                       .-..+|..|..+|.+++..+..
T Consensus       384 ~~~~~~~~ea~~~~~~~~~~~~~  406 (656)
T PRK15174        384 SHLPQSFEEGLLALDGQISAVNL  406 (656)
T ss_pred             hhchhhHHHHHHHHHHHHHhcCC
Confidence             2345666777777777765533

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.99  E-value=3.3e-05  Score=68.34  Aligned_cols=65  Identities=35%  Similarity=0.508  Sum_probs=59.9

Q ss_pred             hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEee
Q psy14927        922 GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIEN  987 (1074)
Q Consensus       922 A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~  987 (1074)
                      |..|.++|++||++++++.++ +.++++....+.+.|++.||++++++.+++++++++++.|+++|
T Consensus        15 A~~l~~~g~~vtli~~~~~~~-~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~   79 (80)
T PF00070_consen   15 AEALAELGKEVTLIERSDRLL-PGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLED   79 (80)
T ss_dssp             HHHHHHTTSEEEEEESSSSSS-TTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEET
T ss_pred             HHHHHHhCcEEEEEeccchhh-hhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEec
Confidence            778889999999999999999 89999999999999999999999999999999988776677765

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=97.95  E-value=0.0012  Score=84.33  Aligned_cols=126  Identities=10%  Similarity=-0.010  Sum_probs=98.8

Q ss_pred             hcCCHHHHHHHHHHcCcccchhh-------hHhh--hcHHHHHHHhhc-----CCChHHHHHHHHHHHhccCHHHHHHHH
Q psy14927          8 KNGDIDRAIRMFEKAETHQQHVP-------RMLL--ENTDKLEKYIIQ-----SKDPVLLKWWAQYIESTEDMDLAMKYY   73 (1074)
Q Consensus         8 ~~g~~~eA~~~Ye~~~~~~~~~~-------~~~~--~~~~~~~~~~~~-----~~~~~l~~~~a~~~e~~~~~~~A~~~y   73 (1074)
                      -.|++++|+++|+++...+..-+       ..+.  +++.++.++..+     +.++..+..++..+...|++++|..++
T Consensus        27 ~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l  106 (765)
T PRK10049         27 WAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKA  106 (765)
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            46999999999999885331222       2222  477777776666     677889999999999999999999999


Q ss_pred             HHhhC-------hhhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhcCChHHHHHHHHHhCC
Q psy14927         74 EEARD-------YLSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQFDEAIHFYSVAGS  133 (1074)
Q Consensus        74 ~~a~d-------~~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~  133 (1074)
                      .++-.       +..+..+|...|++++|....+     .+++..+...+|..+...|..+.|++.+.++-.
T Consensus       107 ~~~l~~~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~  178 (765)
T PRK10049        107 KQLVSGAPDKANLLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL  178 (765)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC
Confidence            98522       5566777889999999988775     466777888899999999999999999886665

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.95  E-value=4.7e-05  Score=89.19  Aligned_cols=108  Identities=19%  Similarity=0.262  Sum_probs=89.2

Q ss_pred             hcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHh---cCChHHHHHH
Q psy14927         35 ENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANA---SGDTAAAYHL  111 (1074)
Q Consensus        35 ~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~---~~~~~~~~~l  111 (1074)
                      ++.+.+.+...+.+++..|+++|+.+..+|+++.|++||.+++|+.++.-+|.-.|+.++..+++..   .++...+++.
T Consensus       332 g~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~  411 (443)
T PF04053_consen  332 GNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQA  411 (443)
T ss_dssp             T-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHH
Confidence            5788999999999999999999999999999999999999999999999999999999988888763   4454444444


Q ss_pred             HHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhC
Q psy14927        112 ARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQA  145 (1074)
Q Consensus       112 a~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~  145 (1074)
                      +-   -.||+++.++.+..+|++.+|.=+|+.|+
T Consensus       412 ~~---~lgd~~~cv~lL~~~~~~~~A~~~A~ty~  442 (443)
T PF04053_consen  412 AL---LLGDVEECVDLLIETGRLPEAALFARTYG  442 (443)
T ss_dssp             HH---HHT-HHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred             HH---HcCCHHHHHHHHHHcCCchHHHHHHHhcC
Confidence            33   35999999999999999999999999885

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.94  E-value=0.00095  Score=84.51  Aligned_cols=80  Identities=19%  Similarity=0.209  Sum_probs=46.1

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHhh---------ChhhhhhHhhccCCHHHHHHHHHh---c---CChHHHHHHHHH
Q psy14927         50 PVLLKWWAQYIESTEDMDLAMKYYEEAR---------DYLSMVRVLCFLQDFSRAAELANA---S---GDTAAAYHLARQ  114 (1074)
Q Consensus        50 ~~l~~~~a~~~e~~~~~~~A~~~y~~a~---------d~~~~vr~l~~~~~~~~a~~i~~~---~---~~~~~~~~la~~  114 (1074)
                      ...|......+-..|++++|.+.|....         -|.++++.++.+|++++|.++...   .   .+......|...
T Consensus       290 ~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~  369 (697)
T PLN03081        290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDL  369 (697)
T ss_pred             hhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHH
Confidence            3455555666666677777777765532         234555666667777666666542   1   233445566666


Q ss_pred             HHhcCChHHHHHHHH
Q psy14927        115 YENSGQFDEAIHFYS  129 (1074)
Q Consensus       115 ~~~~g~~~~Ai~~y~  129 (1074)
                      |.+.|++++|.+.|.
T Consensus       370 y~k~G~~~~A~~vf~  384 (697)
T PLN03081        370 YSKWGRMEDARNVFD  384 (697)
T ss_pred             HHHCCCHHHHHHHHH
Confidence            666666666655543

>KOG0985|consensus

Probab=97.93  E-value=0.017  Score=70.40  Aligned_cols=318  Identities=15%  Similarity=0.143  Sum_probs=202.8

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchh-------hhHhh-----hcHHHHHHHhhcC---CChHHHHHHHHHHHhccCHHHHH
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHV-------PRMLL-----ENTDKLEKYIIQS---KDPVLLKWWAQYIESTEDMDLAM   70 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~-------~~~~~-----~~~~~~~~~~~~~---~~~~l~~~~a~~~e~~~~~~~A~   70 (1074)
                      +|..+-..|=|++.||.= .+..+       -.+++     .+..++-+||.+-   +.|.    .|..+-+.+-|++|-
T Consensus       994 fMtadLp~eLIELLEKIv-L~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~----ia~iai~~~LyEEAF 1068 (1666)
T KOG0985|consen  994 FMTADLPNELIELLEKIV-LDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPD----IAEIAIENQLYEEAF 1068 (1666)
T ss_pred             HHhcCCcHHHHHHHHHHh-cCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchh----HHHHHhhhhHHHHHH
Confidence            455666677788888753 11111       11221     2677888888873   2333    377888999999999


Q ss_pred             HHHHHhhChhhhhhH-hhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHhCC---hHHHHHHHHHhCc
Q psy14927         71 KYYEEARDYLSMVRV-LCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGS---CGNAVRLCKEQAL  146 (1074)
Q Consensus        71 ~~y~~a~d~~~~vr~-l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~---~~~A~~la~~~~~  146 (1074)
                      ..|.+-.-..+++.+ +.+.++.++|.+.+...+.++...++|+--.+.|.+++||+-|+++..   |.+-++.|.+.|.
T Consensus      1069 ~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyikadDps~y~eVi~~a~~~~~ 1148 (1666)
T KOG0985|consen 1069 AIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKADDPSNYLEVIDVASRTGK 1148 (1666)
T ss_pred             HHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhcCCcHHHHHHHHHHHhcCc
Confidence            999999999999999 788999999999999999999999999999999999999999999975   8899999999999


Q ss_pred             hHHHHHHhhhcCc---hhHHH------HH---------HHHcc-C--ChhHHHHHHHHhCChHHHHHHHHhhccCCcchH
Q psy14927        147 DDQLWNLALSAGP---SEQIE------AA---------TYLET-I--EPDKAVLLYHKAGALHKALDLAFKLTLSNSGLV  205 (1074)
Q Consensus       147 ~~~~~~l~~~~~~---~~~~~------~A---------~~~e~-~--~~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~  205 (1074)
                      |++++...+.+..   +-+..      +|         +++.. +  +..+-+.-...-|.|+ |.+++...      +.
T Consensus      1149 ~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~-aAkl~y~~------vS 1221 (1666)
T KOG0985|consen 1149 YEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYE-AAKLLYSN------VS 1221 (1666)
T ss_pred             HHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhH-HHHHHHHH------hh
Confidence            9999887544221   11111      11         01111 0  0111111111112221 12222221      11


Q ss_pred             HHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHH-------HH--Hh--cCCCCCChhHHHHHHHHHHccCCHHHHHHH
Q psy14927        206 FQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAA-------NY--LQ--SSDWKSQPELLKSIISFYSKGKAPHLLANF  274 (1074)
Q Consensus       206 ~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa-------~y--l~--~~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~  274 (1074)
                      .|.+-.--|...|+..-+++-|..+.....|....       +|  .|  +++.-........++.+|...|-|+++...
T Consensus      1222 N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl 1301 (1666)
T KOG0985|consen 1222 NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISL 1301 (1666)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHH
Confidence            13233334555777777888887777777676422       11  11  233333456778889999999999999888


Q ss_pred             HHHHHhHHHHhhcCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhcCChHHHhhHHHHHHHHHhhccCcc
Q psy14927        275 YVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGNYEKGLGALNEAKRCLLKHNDSM  354 (1074)
Q Consensus       275 ~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  354 (1074)
                      .+.---.|        .||=-++--+-.|=  ..-.|++|...|.+--+++-|-          =.+|++..+.-|..-+
T Consensus      1302 ~Ea~LGLE--------RAHMgmfTELaiLY--skykp~km~EHl~LFwsRvNip----------KviRA~eqahlW~Elv 1361 (1666)
T KOG0985|consen 1302 LEAGLGLE--------RAHMGMFTELAILY--SKYKPEKMMEHLKLFWSRVNIP----------KVIRAAEQAHLWSELV 1361 (1666)
T ss_pred             HHhhhchh--------HHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHhcchH----------HHHHHHHHHHHHHHHH
Confidence            77666666        44444333222222  1245677777666654444444          1247888877776554


Q ss_pred             h
Q psy14927        355 Y  355 (1074)
Q Consensus       355 ~  355 (1074)
                      -
T Consensus      1362 f 1362 (1666)
T KOG0985|consen 1362 F 1362 (1666)
T ss_pred             H
Confidence            3

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=97.91  E-value=0.0078  Score=70.33  Aligned_cols=77  Identities=18%  Similarity=0.197  Sum_probs=57.9

Q ss_pred             HHHHHhccCHHHHHHHHHHhhCh--------hhhhhHhhccCCHHHHHHHHHh---cCC------hHHHHHHHHHHHhcC
Q psy14927         57 AQYIESTEDMDLAMKYYEEARDY--------LSMVRVLCFLQDFSRAAELANA---SGD------TAAAYHLARQYENSG  119 (1074)
Q Consensus        57 a~~~e~~~~~~~A~~~y~~a~d~--------~~~vr~l~~~~~~~~a~~i~~~---~~~------~~~~~~la~~~~~~g  119 (1074)
                      |..+...|++++|+..|.++-..        ..+..++...|++++|.++.+.   ..+      ......+|..|...|
T Consensus        42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g  121 (389)
T PRK11788         42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG  121 (389)
T ss_pred             HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence            66667889999999999997533        3345568889999999888763   111      134568899999999


Q ss_pred             ChHHHHHHHHHhCC
Q psy14927        120 QFDEAIHFYSVAGS  133 (1074)
Q Consensus       120 ~~~~Ai~~y~~a~~  133 (1074)
                      ++++|+++|.++-.
T Consensus       122 ~~~~A~~~~~~~l~  135 (389)
T PRK11788        122 LLDRAEELFLQLVD  135 (389)
T ss_pred             CHHHHHHHHHHHHc
Confidence            99999998887643

>KOG2002|consensus

Probab=97.89  E-value=0.013  Score=71.79  Aligned_cols=204  Identities=19%  Similarity=0.169  Sum_probs=118.5

Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHH-HHHHHhCchHHHHHHhhhcCchhHHHHHHHHccCChhHHHHHHHH
Q psy14927        105 TAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAV-RLCKEQALDDQLWNLALSAGPSEQIEAATYLETIEPDKAVLLYHK  183 (1074)
Q Consensus       105 ~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~-~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~~~~~A~~ly~k  183 (1074)
                      ..++|.+||.|=.+||+++|-.||..|-+.+... -|                                .+.--++.|++
T Consensus       307 aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l--------------------------------~~~GlgQm~i~  354 (1018)
T KOG2002|consen  307 AESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVL--------------------------------PLVGLGQMYIK  354 (1018)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccc--------------------------------cccchhHHHHH
Confidence            4578999999999999999999998877665332 10                                01123556666


Q ss_pred             hCChHHHHHHHHhhccCCcchHHHHHHHHHH----hcCC----ChhhHHHhhhh-----cchHHHHHHHHHHHhcCCCCC
Q psy14927        184 AGALHKALDLAFKLTLSNSGLVFQIKAMKCL----LKSG----DTNKIIFFAGV-----SRMKEIYVMAANYLQSSDWKS  250 (1074)
Q Consensus       184 aG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l----~~~~----~~~~~i~~a~~-----~r~~~l~~~aa~yl~~~~~~~  250 (1074)
                      -|.+..|.-.+.+.-....+.   ...|+.|    +..+    ..+++..+.+.     .++.+.|+..+..++..|...
T Consensus       355 ~~dle~s~~~fEkv~k~~p~~---~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~  431 (1018)
T KOG2002|consen  355 RGDLEESKFCFEKVLKQLPNN---YETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWA  431 (1018)
T ss_pred             hchHHHHHHHHHHHHHhCcch---HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHH
Confidence            666666665555421111111   1223333    1111    12444444443     345568888998888876555


Q ss_pred             ChhHHHHHHHHHHccCCHHHHHHHHHHHHhHHHHhhcCHHHHHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHHHHHHhh
Q psy14927        251 QPELLKSIISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLL-KHNDSMYETLKSSVVEKLAEVEIDE  329 (1074)
Q Consensus       251 ~~~~~~~i~~~Y~k~~~~~~aa~~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~  329 (1074)
                      .-..+.++..+++..+..-. .--...+|-.. -..|++.+|++.+.+|...+. ..+........-++.+-+..++=. 
T Consensus       432 sL~~~~~A~d~L~~~~~~ip-~E~LNNvaslh-f~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~-  508 (1018)
T KOG2002|consen  432 SLDAYGNALDILESKGKQIP-PEVLNNVASLH-FRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEE-  508 (1018)
T ss_pred             HHHHHHHHHHHHHHcCCCCC-HHHHHhHHHHH-HHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHh-
Confidence            56667777766655554421 12234456666 678999999999999998855 333333212222222223333333 


Q ss_pred             cCChHHHhhHHHHHHHH
Q psy14927        330 FGNYEKGLGALNEAKRC  346 (1074)
Q Consensus       330 ~~~~~~a~~~~~~~~~~  346 (1074)
                      +++.+.|..||..+-..
T Consensus       509 l~~~~~A~e~Yk~Ilke  525 (1018)
T KOG2002|consen  509 LHDTEVAEEMYKSILKE  525 (1018)
T ss_pred             hhhhhHHHHHHHHHHHH
Confidence            47888888888876544

>PLN03077 Protein ECB2; Provisional

Probab=97.88  E-value=0.0084  Score=77.87  Aligned_cols=158  Identities=10%  Similarity=0.075  Sum_probs=87.6

Q ss_pred             HHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcch-----HHHHHH-------------
Q psy14927        177 AVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRM-----KEIYVM-------------  238 (1074)
Q Consensus       177 A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~-----~~l~~~-------------  238 (1074)
                      =+..|.|+|++.+|.+++-+....|  ..-|-.=+..+.+.|+.+.++.+-...+.     ...|..             
T Consensus       430 Li~~y~k~g~~~~A~~vf~~m~~~d--~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~  507 (857)
T PLN03077        430 LIEMYSKCKCIDKALEVFHNIPEKD--VISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMC  507 (857)
T ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCC--eeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHH
Confidence            4578999999999999988765322  11232333444555555554444333221     000110             


Q ss_pred             ---HHHHHhcCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHH----------HhHHHHhhcCHHHHHHHHHHHHHHHHh
Q psy14927        239 ---AANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSC----------AQVEIDEFGNYEKGLGALNEAKRCLLK  305 (1074)
Q Consensus       239 ---aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~----------a~~ei~e~~~y~~a~~~l~~a~~~l~~  305 (1074)
                         .-.+.....+..+.-.+..++..|.|.|..++|-..+..+          ..-- -..|++++|..++.++.+    
T Consensus       508 ~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~-~~~G~~~~A~~lf~~M~~----  582 (857)
T PLN03077        508 GKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGY-VAHGKGSMAVELFNRMVE----  582 (857)
T ss_pred             hHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHH-HHcCCHHHHHHHHHHHHH----
Confidence               1112222334555566778899999999999997765544          2222 356888888888766543    


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHhhcCChHHHhhHHHHHHHH
Q psy14927        306 HNDSMYETLKSSVVEKLAEVEIDEFGNYEKGLGALNEAKRC  346 (1074)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  346 (1074)
                      .+.. |+..-  ...+ ...+.+ .|+.+.|.+++.+....
T Consensus       583 ~g~~-Pd~~T--~~~l-l~a~~~-~g~v~ea~~~f~~M~~~  618 (857)
T PLN03077        583 SGVN-PDEVT--FISL-LCACSR-SGMVTQGLEYFHSMEEK  618 (857)
T ss_pred             cCCC-CCccc--HHHH-HHHHhh-cChHHHHHHHHHHHHHH
Confidence            3432 21110  1111 122344 47788888777776633

>PRK08275 putative oxidoreductase; Provisional

Probab=97.87  E-value=0.00013  Score=89.35  Aligned_cols=44  Identities=27%  Similarity=0.265  Sum_probs=35.3

Q ss_pred             CCeeeCCCCCCCCCCEEEecccCC-CCCcHHHHHHHHHHHHHHhh
Q psy14927       1028 GRVPVNSRFQTVIPNIFAIGDCIH-GPMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1028 G~I~Vd~~~~ts~~~IyAiGD~~~-~~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                      |.|.||..++|++||+||+|||+. +......|.-.|+.|+.+++
T Consensus       357 Ggi~~d~~~~t~i~gl~a~Ge~~~~~~~~~~~~~~~G~~a~~~~~  401 (554)
T PRK08275        357 SGVWVNEKAETTVPGLYAAGDMASVPHNYMLGAFTYGWFAGENAA  401 (554)
T ss_pred             CcEEECCCCccCCCCEEECcccCCchhHHHHHHHHHHHHHHHHHH
Confidence            569999999999999999999875 33345567788888887764

>PRK08401 L-aspartate oxidase; Provisional

Probab=97.85  E-value=4.1e-05  Score=91.66  Aligned_cols=46  Identities=24%  Similarity=0.392  Sum_probs=35.3

Q ss_pred             CCCeeeCCCCCCCCCCEEEecccCC-C--------CCcHHHHHHHHHHHHHHhhC
Q psy14927       1027 KGRVPVNSRFQTVIPNIFAIGDCIH-G--------PMLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus      1027 ~G~I~Vd~~~~ts~~~IyAiGD~~~-~--------~~~~~~A~~~G~~aA~~I~~ 1072 (1074)
                      -|.|.||...+|++||+||+|+|+. +        ......++-.|++|+.+++.
T Consensus       310 ~GGi~vd~~~~t~IpGLyAaGE~a~~G~hG~nrl~gnsl~~~~v~G~~ag~~aa~  364 (466)
T PRK08401        310 IGGISVDTFYRTGIKNLYAIGEAASNGFHGANRLASNSLLECIVSGLEVARTISR  364 (466)
T ss_pred             CCCEEECCCCcccCCCEEECccccccCCCCCCcchhHHHHHHHHHHHHHHHHHhh
Confidence            4778999999999999999999973 2        11244567778888888753

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=97.79  E-value=8.5e-05  Score=84.96  Aligned_cols=45  Identities=31%  Similarity=0.419  Sum_probs=34.8

Q ss_pred             CCeeeCCCCCCCCCCEEEecccCCC-----CCc----HHHHHHHHHHHHHHhhC
Q psy14927       1028 GRVPVNSRFQTVIPNIFAIGDCIHG-----PML----AHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus      1028 G~I~Vd~~~~ts~~~IyAiGD~~~~-----~~~----~~~A~~~G~~aA~~I~~ 1072 (1074)
                      |.|.||.+.+|++||+||||.|+..     ..+    .-.++--|..+|.+|.+
T Consensus       342 GGI~vD~~GrTsi~gLYAiGEvA~TGlHGANRLASNSLLE~vV~g~~aA~~i~~  395 (518)
T COG0029         342 GGIAVDANGRTSIPGLYAIGEVACTGLHGANRLASNSLLECLVFGKRAAEDIAG  395 (518)
T ss_pred             ccEEECCCCcccCcccEEeeeecccccccchhhhhhhHHHHHHHHHHHHHHhhc
Confidence            7799999999999999999999863     112    33456667777777775

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.78  E-value=0.00055  Score=76.34  Aligned_cols=110  Identities=21%  Similarity=0.288  Sum_probs=63.5

Q ss_pred             hHHHHHHHHHHccCCHHHHHHHHHHHHhHHHHhhcCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhcCC
Q psy14927        253 ELLKSIISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGN  332 (1074)
Q Consensus       253 ~~~~~i~~~Y~k~~~~~~aa~~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (1074)
                      ..++++..+|..-+....+..++..+|... -..|+|++|...+.+..+...+.+.... ... ...+..+-.++. .||
T Consensus       136 ~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~-~~l~~y~~A~~~~e~~~~~~l~~~l~~~-~~~-~~~l~a~l~~L~-~~D  211 (282)
T PF14938_consen  136 EYYQKAAELYEQEGSPHSAAECLLKAADLY-ARLGRYEEAIEIYEEVAKKCLENNLLKY-SAK-EYFLKAILCHLA-MGD  211 (282)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTT-HHHHHHHHHHHHHTCCCHCTTGH-HHH-HHHHHHHHHHHH-TT-
T ss_pred             HHHHHHHHHHHHCCChhhHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHhhcccccch-hHH-HHHHHHHHHHHH-cCC
Confidence            444556666777777777778888888887 7778888888888776665444333222 111 111222234445 699


Q ss_pred             hHHHhhHHHHHHHHHhhccCc-chhHHHHHHHHHHH
Q psy14927        333 YEKGLGALNEAKRCLLKHNDS-MYETLKSSVVEKIA  367 (1074)
Q Consensus       333 ~~~a~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~  367 (1074)
                      +..|-+.|.+....-..|.+. -...+ ..+++.++
T Consensus       212 ~v~A~~~~~~~~~~~~~F~~s~E~~~~-~~l~~A~~  246 (282)
T PF14938_consen  212 YVAARKALERYCSQDPSFASSREYKFL-EDLLEAYE  246 (282)
T ss_dssp             HHHHHHHHHHHGTTSTTSTTSHHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCCCCcHHHHHH-HHHHHHHH
Confidence            988888777766655555542 22233 33666664

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=97.78  E-value=0.00017  Score=88.98  Aligned_cols=38  Identities=18%  Similarity=0.275  Sum_probs=32.1

Q ss_pred             CCCCCCCCCEEEecccCC--CCCcHHHHHHHHHHHHHHhh
Q psy14927       1034 SRFQTVIPNIFAIGDCIH--GPMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1034 ~~~~ts~~~IyAiGD~~~--~~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                      .+++|++||+||+|||+.  ...++..+..+|.+++.+++
T Consensus       389 ~~~~T~v~glyA~Ge~~~~~~~~l~~~s~~~g~~ag~~~~  428 (608)
T PRK06854        389 YNRMTTVEGLFAAGDVVGGSPHKFSSGSFAEGRIAAKAAV  428 (608)
T ss_pred             cccccCCCCEEEeeecCCCCcchhHHHHHHHHHHHHHHHH
Confidence            889999999999999975  34567788889999988875

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.77  E-value=0.00029  Score=86.08  Aligned_cols=45  Identities=24%  Similarity=0.367  Sum_probs=35.7

Q ss_pred             CCCeeeCCCCCCCCCCEEEecccCCCC--------CcHHHHHHHHHHHHHHhh
Q psy14927       1027 KGRVPVNSRFQTVIPNIFAIGDCIHGP--------MLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1027 ~G~I~Vd~~~~ts~~~IyAiGD~~~~~--------~~~~~A~~~G~~aA~~I~ 1071 (1074)
                      .|.|.||...+|++||+||+|+++++.        .....|+-.|++|+.+++
T Consensus       348 ~GGi~vd~~~~t~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa  400 (543)
T PRK06263        348 MGGIRINEDCETNIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAA  400 (543)
T ss_pred             cCCEEECCCCcccCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHH
Confidence            367999999999999999999987531        124467888888888875

>TIGR00136 gidA glucose-inhibited division protein A

Probab=97.76  E-value=0.00015  Score=87.18  Aligned_cols=49  Identities=16%  Similarity=0.316  Sum_probs=35.6

Q ss_pred             hHHHHhhhC-CeEEEeeeEEEec----CCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        847 GIAHLFKSN-KVTQLNGHGKITG----PNTVTVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       847 ~~~~~l~~~-gV~~~~g~v~~id----~~~~~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                      .+.+.+.+. |++++.+.|+.+.    .....|.+.+|  ..+.++.||+|||...
T Consensus       101 ~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t~~G--~~I~Ad~VILATGtfL  154 (617)
T TIGR00136       101 AMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVTQDG--LKFRAKAVIITTGTFL  154 (617)
T ss_pred             HHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEECCC--CEEECCEEEEccCccc
Confidence            344555555 8999999877652    23345677777  5899999999999974

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=97.74  E-value=4e-05  Score=85.50  Aligned_cols=210  Identities=20%  Similarity=0.197  Sum_probs=50.7

Q ss_pred             CCChHHHHHHHHHHHhccCHHHHHHHHHH--------hhChhhhhhHhhccCCHHHHHHHHHhc----CChHHHHHHHHH
Q psy14927         47 SKDPVLLKWWAQYIESTEDMDLAMKYYEE--------ARDYLSMVRVLCFLQDFSRAAELANAS----GDTAAAYHLARQ  114 (1074)
Q Consensus        47 ~~~~~l~~~~a~~~e~~~~~~~A~~~y~~--------a~d~~~~vr~l~~~~~~~~a~~i~~~~----~~~~~~~~la~~  114 (1074)
                      .+++..|..+|+.+++.++++.|.++|.+        ..|+..++.+ ...+++++|.+++...    ++...       
T Consensus        41 ~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~-------  112 (280)
T PF13429_consen   41 PDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRY-------  112 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccch-------
Confidence            46788999999999999999999999987        4455566666 6788888888876532    22222       


Q ss_pred             HHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHh-hhcCchhHHHHHHHHccCChhHHHHHHHHhCChHHHHHH
Q psy14927        115 YENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLA-LSAGPSEQIEAATYLETIEPDKAVLLYHKAGALHKALDL  193 (1074)
Q Consensus       115 ~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~-~~~~~~~~~~~A~~~e~~~~~~A~~ly~kaG~~~kAl~l  193 (1074)
                            +..+++.|...+.|+++.++-++.      .... ....+..+...|.++            .+.|++.+|+++
T Consensus       113 ------l~~~l~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~a~~~------------~~~G~~~~A~~~  168 (280)
T PF13429_consen  113 ------LLSALQLYYRLGDYDEAEELLEKL------EELPAAPDSARFWLALAEIY------------EQLGDPDKALRD  168 (280)
T ss_dssp             -----------H-HHHTT-HHHHHHHHHHH------HH-T---T-HHHHHHHHHHH------------HHCCHHHHHHHH
T ss_pred             ------hhHHHHHHHHHhHHHHHHHHHHHH------HhccCCCCCHHHHHHHHHHH------------HHcCCHHHHHHH
Confidence                  244555555556665555443332      0000 011123333444444            444444444444


Q ss_pred             HHhhc--cCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHccCCHHHH
Q psy14927        194 AFKLT--LSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLL  271 (1074)
Q Consensus       194 ~~~~~--~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~a  271 (1074)
                      +.+.-  .+++. -.+..-+-.|+..|+.+++..            ....|....  ..+|.....+...|...|++++|
T Consensus       169 ~~~al~~~P~~~-~~~~~l~~~li~~~~~~~~~~------------~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~A  233 (280)
T PF13429_consen  169 YRKALELDPDDP-DARNALAWLLIDMGDYDEARE------------ALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEA  233 (280)
T ss_dssp             HHHHHHH-TT-H-HHHHHHHHHHCTTCHHHHHHH------------HHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHH
T ss_pred             HHHHHHcCCCCH-HHHHHHHHHHHHCCChHHHHH------------HHHHHHHHC--cCHHHHHHHHHHHhccccccccc
Confidence            43310  00000 000011122334444433222            222222222  45666777778888888888887


Q ss_pred             HHHHHHH--------------HhHHHHhhcCHHHHHHHHHHHHHHHH
Q psy14927        272 ANFYVSC--------------AQVEIDEFGNYEKGLGALNEAKRCLL  304 (1074)
Q Consensus       272 a~~~~~~--------------a~~ei~e~~~y~~a~~~l~~a~~~l~  304 (1074)
                      -..+...              |..= ...|++++|..+++.+.+.|.
T Consensus       234 l~~~~~~~~~~p~d~~~~~~~a~~l-~~~g~~~~A~~~~~~~~~~l~  279 (280)
T PF13429_consen  234 LEYLEKALKLNPDDPLWLLAYADAL-EQAGRKDEALRLRRQALRLLR  279 (280)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHH-T--------------------
T ss_pred             ccccccccccccccccccccccccc-ccccccccccccccccccccC
Confidence            7666554              3332 456777777777776666554

>KOG1840|consensus

Probab=97.74  E-value=0.0026  Score=75.22  Aligned_cols=113  Identities=18%  Similarity=0.167  Sum_probs=74.3

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhCh-----
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDY-----   79 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~-----   79 (1074)
                      -...+|+|++|+.+++.+-+.    ...-.+        .....=..+..++|.++.+.+++.+|+..|..|=++     
T Consensus       208 ~y~~~g~~e~A~~l~k~Al~~----l~k~~G--------~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~  275 (508)
T KOG1840|consen  208 MYAVQGRLEKAEPLCKQALRI----LEKTSG--------LKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF  275 (508)
T ss_pred             HHHHhccHHHHHHHHHHHHHH----HHHccC--------ccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence            456789999999999988743    111111        000000235558999999999999999999997655     


Q ss_pred             -----------hhhhhHhhccCCHHHHHHHHHhc----------CCh---HHHHHHHHHHHhcCChHHHHHHHH
Q psy14927         80 -----------LSMVRVLCFLQDFSRAAELANAS----------GDT---AAAYHLARQYENSGQFDEAIHFYS  129 (1074)
Q Consensus        80 -----------~~~vr~l~~~~~~~~a~~i~~~~----------~~~---~~~~~la~~~~~~g~~~~Ai~~y~  129 (1074)
                                 .++.-+|+..|++++|...+...          ...   .....++..|+..|++++|+.+|.
T Consensus       276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q  349 (508)
T KOG1840|consen  276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQ  349 (508)
T ss_pred             CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence                       23334477778877777665421          111   124467777778888888888877

>TIGR00551 nadB L-aspartate oxidase

Probab=97.72  E-value=0.00017  Score=87.07  Aligned_cols=46  Identities=24%  Similarity=0.332  Sum_probs=35.7

Q ss_pred             CCCeeeCCCCCCCCCCEEEecccCC-CC--------CcHHHHHHHHHHHHHHhhC
Q psy14927       1027 KGRVPVNSRFQTVIPNIFAIGDCIH-GP--------MLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus      1027 ~G~I~Vd~~~~ts~~~IyAiGD~~~-~~--------~~~~~A~~~G~~aA~~I~~ 1072 (1074)
                      -|.|.||.+.+|++||+||+|+|+. +.        .....|.-.|++|+.+++.
T Consensus       333 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~  387 (488)
T TIGR00551       333 CGGISVDDHGRTTVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDISR  387 (488)
T ss_pred             cCCEEECCCCcccCCCEEECccccccccCcccccchhHHHHHHHHHHHHHHHHHh
Confidence            3679999999999999999999963 21        1345677888888888763

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=97.71  E-value=0.00028  Score=86.83  Aligned_cols=45  Identities=22%  Similarity=0.318  Sum_probs=34.9

Q ss_pred             CCCeeeCCCCC----CCCCCEEEecccCC-C--------CCcHHHHHHHHHHHHHHhh
Q psy14927       1027 KGRVPVNSRFQ----TVIPNIFAIGDCIH-G--------PMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1027 ~G~I~Vd~~~~----ts~~~IyAiGD~~~-~--------~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                      -|.|.||...+    |++||+||+|+|+. +        ......|+-.|++|+.+++
T Consensus       342 ~GGi~id~~~~v~~~t~I~GLyAaGe~a~~g~hGa~rl~g~sl~~a~v~G~~Ag~~aa  399 (566)
T TIGR01812       342 MGGIPTDYTGRVICETIVKGLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAA  399 (566)
T ss_pred             CCCeEECcCcccccCcccCCeeecccccccCcCcccccchhhHHHHHHHHHHHHHHHH
Confidence            36788888888    99999999999874 2        1245667888888888775

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>KOG2495|consensus

Probab=97.67  E-value=6.1e-05  Score=84.07  Aligned_cols=102  Identities=20%  Similarity=0.183  Sum_probs=74.3

Q ss_pred             hhhhhccccchHHHHHHHhh-------hhhhhccccccccchhhhhh-hhhHHHhhhhhhHHHHhhhCCeEEEee-eEEE
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVKLNLETMMG-TKSAAVKALTGGIAHLFKSNKVTQLNG-HGKI  866 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~~~~~~~~~-~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~  866 (1074)
                      ++|||||||.|+..|-+|+.       .++...... ..+.+-...+ -...+-+.+..+..+++.+.||++..| .|..
T Consensus       220 h~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~-i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~  298 (491)
T KOG2495|consen  220 HFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKD-IKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDLDTGTMVKK  298 (491)
T ss_pred             EEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhh-eEEEeeccchhHHHHHHHHHHHHHHHHhhhccceeecccEEEe
Confidence            58999999999999999998       111111111 1111111111 122233667777889999999999999 5788


Q ss_pred             ecCCeEEEEeCCCCeeEEEcCeEEEccCCCCC
Q psy14927        867 TGPNTVTVIKSDGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       867 id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      +++.++.+.+.+|+..++.|--||-|||..|+
T Consensus       299 V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~r  330 (491)
T KOG2495|consen  299 VTEKTIHAKTKDGEIEEIPYGLLVWATGNGPR  330 (491)
T ss_pred             ecCcEEEEEcCCCceeeecceEEEecCCCCCc
Confidence            99999999888998889999999999999874

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=97.61  E-value=0.025  Score=66.49  Aligned_cols=246  Identities=11%  Similarity=0.080  Sum_probs=147.2

Q ss_pred             hcHHHHHHHhhcC----CChHHHHHH-HHHHHhccCHHHHHHHHHHhhChh---------hhhhHhhccCCHHHHHHHHH
Q psy14927         35 ENTDKLEKYIIQS----KDPVLLKWW-AQYIESTEDMDLAMKYYEEARDYL---------SMVRVLCFLQDFSRAAELAN  100 (1074)
Q Consensus        35 ~~~~~~~~~~~~~----~~~~l~~~~-a~~~e~~~~~~~A~~~y~~a~d~~---------~~vr~l~~~~~~~~a~~i~~  100 (1074)
                      +||.+++..+.+.    +.|.+..-. |+++...|+++.|.++|.++....         ...+++...|+++.|.+..+
T Consensus        98 Gd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~  177 (398)
T PRK10747         98 GDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVD  177 (398)
T ss_pred             CCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            6888888777763    235555544 788899999999999999866531         12567888999999999776


Q ss_pred             -----hcCChHHHHHHHHHHHhcCChHHHHHHHHHhCCh---HHH-HH-HHHHhCchHHHHHHh-hhcCchhHHHHHHHH
Q psy14927        101 -----ASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSC---GNA-VR-LCKEQALDDQLWNLA-LSAGPSEQIEAATYL  169 (1074)
Q Consensus       101 -----~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~---~~A-~~-la~~~~~~~~~~~l~-~~~~~~~~~~~A~~~  169 (1074)
                           .+++..+...++..|...|++++|++++-...+.   +.+ .. +-..-  +-.+...+ .....+....+-+-+
T Consensus       178 ~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a--~~~l~~~~~~~~~~~~l~~~w~~l  255 (398)
T PRK10747        178 KLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQA--WIGLMDQAMADQGSEGLKRWWKNQ  255 (398)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH--HHHHHHHHHHhcCHHHHHHHHHhC
Confidence                 4678889999999999999999999776665543   211 11 11000  00001111 111111211111111


Q ss_pred             -cc--CC---hhHHHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhc--chHHHHHHHHH
Q psy14927        170 -ET--IE---PDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVS--RMKEIYVMAAN  241 (1074)
Q Consensus       170 -e~--~~---~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~--r~~~l~~~aa~  241 (1074)
                       ..  .+   ....+..+..+|++.+|.+++.+.                |-+..|.+.+..++...  +..+.-..+-.
T Consensus       256 p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~----------------l~~~~~~~l~~l~~~l~~~~~~~al~~~e~  319 (398)
T PRK10747        256 SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDG----------------LKRQYDERLVLLIPRLKTNNPEQLEKVLRQ  319 (398)
T ss_pred             CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHH----------------HhcCCCHHHHHHHhhccCCChHHHHHHHHH
Confidence             11  12   245788899999999999998663                11233333333333221  11112222233


Q ss_pred             HHhcCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHH-------------HhHHHHhhcCHHHHHHHHHHHHH
Q psy14927        242 YLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSC-------------AQVEIDEFGNYEKGLGALNEAKR  301 (1074)
Q Consensus       242 yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~-------------a~~ei~e~~~y~~a~~~l~~a~~  301 (1074)
                      ++...  ..+|.....+.+++...+.|.+|-..+...             ++.. +.-|+.++|.+.+.++..
T Consensus       320 ~lk~~--P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~-~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        320 QIKQH--GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADAL-DRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             HHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHh
Confidence            33322  455666667788888888888877555443             5555 667777777777766654

>KOG1840|consensus

Probab=97.60  E-value=0.00076  Score=79.71  Aligned_cols=156  Identities=19%  Similarity=0.231  Sum_probs=99.9

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchhhhHhhh--cHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhCh----
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHVPRMLLE--NTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDY----   79 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~----   79 (1074)
                      +.++++|++|+.+|+++-+..    .-.++  ++..          -..+..+|..+-.+|++++|..++.+|=++    
T Consensus       251 y~~~~k~~eAv~ly~~AL~i~----e~~~G~~h~~v----------a~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~  316 (508)
T KOG1840|consen  251 YRSLGKYDEAVNLYEEALTIR----EEVFGEDHPAV----------AATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL  316 (508)
T ss_pred             HHHhccHHHHHHHHHHHHHHH----HHhcCCCCHHH----------HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh
Confidence            467899999999999998433    33222  1111          336667888889999999999999887655    


Q ss_pred             ------------hhhhhHhhccCCHHHHHHHHHhcC----------ChH---HHHHHHHHHHhcCChHHHHHHHHHhCCh
Q psy14927         80 ------------LSMVRVLCFLQDFSRAAELANASG----------DTA---AAYHLARQYENSGQFDEAIHFYSVAGSC  134 (1074)
Q Consensus        80 ------------~~~vr~l~~~~~~~~a~~i~~~~~----------~~~---~~~~la~~~~~~g~~~~Ai~~y~~a~~~  134 (1074)
                                  .++.-+++..+.+++|..+.+..-          ++.   --..+|..|..+|.+++|.+||.     
T Consensus       317 ~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k-----  391 (508)
T KOG1840|consen  317 LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYK-----  391 (508)
T ss_pred             hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHH-----
Confidence                        344556888899999988877421          111   12377888888999999999875     


Q ss_pred             HHHHHHHHHhCch-HHHHHHhhhcCchhHHHH-HHHHccCChhHHHHHHHHhCChH
Q psy14927        135 GNAVRLCKEQALD-DQLWNLALSAGPSEQIEA-ATYLETIEPDKAVLLYHKAGALH  188 (1074)
Q Consensus       135 ~~A~~la~~~~~~-~~~~~l~~~~~~~~~~~~-A~~~e~~~~~~A~~ly~kaG~~~  188 (1074)
                       +|+...++.+-- +..++..       +-.. ..|.+.+++..|..+|..++...
T Consensus       392 -~ai~~~~~~~~~~~~~~~~~-------l~~la~~~~~~k~~~~a~~l~~~~~~i~  439 (508)
T KOG1840|consen  392 -KAIQILRELLGKKDYGVGKP-------LNQLAEAYEELKKYEEAEQLFEEAKDIM  439 (508)
T ss_pred             -HHHHHHHhcccCcChhhhHH-------HHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence             455555544211 1111111       1122 34444466777888877665444

>KOG0985|consensus

Probab=97.58  E-value=0.01  Score=72.15  Aligned_cols=91  Identities=18%  Similarity=0.259  Sum_probs=78.8

Q ss_pred             hcCCHHHHHHHHHHcCcccchhhhHhhh---cHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhC---hhh
Q psy14927          8 KNGDIDRAIRMFEKAETHQQHVPRMLLE---NTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARD---YLS   81 (1074)
Q Consensus         8 ~~g~~~eA~~~Ye~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d---~~~   81 (1074)
                      +.+-++||-..|.|-+-+. .+..++++   +.+++.+|-.+.+.|.+|.++|+.-...|...+|.+.|.+|.|   |..
T Consensus      1060 ~~~LyEEAF~ifkkf~~n~-~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyikadDps~y~e 1138 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKKFDMNV-SAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKADDPSNYLE 1138 (1666)
T ss_pred             hhhHHHHHHHHHHHhcccH-HHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhcCCcHHHHH
Confidence            4566899999999998777 77888875   6789999999999999999999999999999999999999987   466


Q ss_pred             hhhHhhccCCHHHHHHHH
Q psy14927         82 MVRVLCFLQDFSRAAELA   99 (1074)
Q Consensus        82 ~vr~l~~~~~~~~a~~i~   99 (1074)
                      +|++-...|.|++..+..
T Consensus      1139 Vi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1139 VIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred             HHHHHHhcCcHHHHHHHH
Confidence            777788888888877653

>PLN02463 lycopene beta cyclase

Probab=97.57  E-value=0.0002  Score=84.70  Aligned_cols=102  Identities=16%  Similarity=0.043  Sum_probs=65.4

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccc-----ccc-------chhhhhhh--------------------
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKG-----VKL-------NLETMMGT--------------------  836 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g-----~~~-------~~~~~~~~--------------------  836 (1074)
                      ..+|+||||||||+++|..+++     .++|+.+...     +.+       .+......                    
T Consensus        28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~  107 (447)
T PLN02463         28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRP  107 (447)
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCc
Confidence            5579999999999999999998     5777644211     110       00000000                    


Q ss_pred             -hhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecC--CeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        837 -KSAAVKALTGGIAHLFKSNKVTQLNGHGKITGP--NTVTVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       837 -~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~--~~~~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                       ..-....+...+.+.+...||+++.++|+.++.  +...|++++|  .++.+|.||.|+|..+
T Consensus       108 y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG--~~i~A~lVI~AdG~~s  169 (447)
T PLN02463        108 YGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDG--VKIQASLVLDATGFSR  169 (447)
T ss_pred             ceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCC--CEEEcCEEEECcCCCc
Confidence             000011222334555566799998777777753  4567778888  6899999999999875

>PRK09077 L-aspartate oxidase; Provisional

Probab=97.55  E-value=0.00051  Score=83.72  Aligned_cols=46  Identities=24%  Similarity=0.216  Sum_probs=35.9

Q ss_pred             CCCeeeCCCCCCCCCCEEEecccCC-C--------CCcHHHHHHHHHHHHHHhhC
Q psy14927       1027 KGRVPVNSRFQTVIPNIFAIGDCIH-G--------PMLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus      1027 ~G~I~Vd~~~~ts~~~IyAiGD~~~-~--------~~~~~~A~~~G~~aA~~I~~ 1072 (1074)
                      -|.|.||.+.+|++||+||+|+|+. +        ......|.-.|++|+.+++.
T Consensus       353 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~  407 (536)
T PRK09077        353 CGGVMVDLHGRTDLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILS  407 (536)
T ss_pred             cCCeeECCCCccccCCEEecccccccccCCCccchhhhHHHHHHHHHHHHHHHHH
Confidence            3678999999999999999999873 2        12355677788888888753

>KOG1586|consensus

Probab=97.55  E-value=0.011  Score=61.18  Aligned_cols=104  Identities=26%  Similarity=0.356  Sum_probs=64.4

Q ss_pred             ccCHHHHHHHHHHhhChhhhhhHhhccCC-HHHHHHHHHhcC---ChHHHHHHHHHHHhcCChH-------HHHHHHHHh
Q psy14927         63 TEDMDLAMKYYEEARDYLSMVRVLCFLQD-FSRAAELANASG---DTAAAYHLARQYENSGQFD-------EAIHFYSVA  131 (1074)
Q Consensus        63 ~~~~~~A~~~y~~a~d~~~~vr~l~~~~~-~~~a~~i~~~~~---~~~~~~~la~~~~~~g~~~-------~Ai~~y~~a  131 (1074)
                      .+.+++|.++|.+|++...+..=...-|+ +-+|.++...++   |.+.+|.-|-.|-+.++..       .||+.|+.-
T Consensus        27 ~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~  106 (288)
T KOG1586|consen   27 SNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDM  106 (288)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhh
Confidence            34677888888887777665544333333 344555544444   3556666665555555654       445556666


Q ss_pred             CChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHcc--CChhHHHHHHHHhCCh
Q psy14927        132 GSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLET--IEPDKAVLLYHKAGAL  187 (1074)
Q Consensus       132 ~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~--~~~~~A~~ly~kaG~~  187 (1074)
                      |+|..|-+   -                  ..++|++||+  .++++|+.+|..||.+
T Consensus       107 Grf~~aAk---~------------------~~~iaEiyEsdl~d~ekaI~~YE~Aae~  143 (288)
T KOG1586|consen  107 GRFTMAAK---H------------------HIEIAEIYESDLQDFEKAIAHYEQAAEY  143 (288)
T ss_pred             hHHHHHHh---h------------------hhhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            66554331   1                  2368999999  4689999999888765

>KOG1126|consensus

Probab=97.55  E-value=0.003  Score=74.43  Aligned_cols=254  Identities=17%  Similarity=0.042  Sum_probs=160.5

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHhhChhh--------hhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHHHHH
Q psy14927         50 PVLLKWWAQYIESTEDMDLAMKYYEEARDYLS--------MVRVLCFLQDFSRAAELANA-----SGDTAAAYHLARQYE  116 (1074)
Q Consensus        50 ~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~--------~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~~~~  116 (1074)
                      .=.+-+.|+.+-+.++|++|.++|....+...        ---+|.|+-+--+..-++++     ..++++.+-+|+.|-
T Consensus       353 ~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfS  432 (638)
T KOG1126|consen  353 GWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFS  432 (638)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhh
Confidence            34667789999999999999999999877522        12237777777777777763     468899999999999


Q ss_pred             hcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhh-cCchhHHHHHHHHcc--C---C----hhHHHHHHHHhCC
Q psy14927        117 NSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALS-AGPSEQIEAATYLET--I---E----PDKAVLLYHKAGA  186 (1074)
Q Consensus       117 ~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~-~~~~~~~~~A~~~e~--~---~----~~~A~~ly~kaG~  186 (1074)
                      -|+|.+.||++|.+|-+.|.-|..|-..        +.-+ ...+++-.+..+|-.  +   +    +--=+..|.|.++
T Consensus       433 LQkdh~~Aik~f~RAiQldp~faYayTL--------lGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek  504 (638)
T KOG1126|consen  433 LQKDHDTAIKCFKRAIQLDPRFAYAYTL--------LGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEK  504 (638)
T ss_pred             hhhHHHHHHHHHHHhhccCCccchhhhh--------cCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccch
Confidence            9999999999999999999877655433        1222 333555566666643  1   1    2334666777777


Q ss_pred             hHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHccC
Q psy14927        187 LHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPELLKSIISFYSKGK  266 (1074)
Q Consensus       187 ~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~  266 (1074)
                      ++-|.-.+.+.-..                                               -..+.-.+-++-.+|.+.|
T Consensus       505 ~e~Ae~~fqkA~~I-----------------------------------------------NP~nsvi~~~~g~~~~~~k  537 (638)
T KOG1126|consen  505 LEFAEFHFQKAVEI-----------------------------------------------NPSNSVILCHIGRIQHQLK  537 (638)
T ss_pred             hhHHHHHHHhhhcC-----------------------------------------------CccchhHHhhhhHHHHHhh
Confidence            77776554442110                                               0111234445555555555


Q ss_pred             CHHHHHHHHHHHHhHH------HHhhcCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhcCChHHHhhHH
Q psy14927        267 APHLLANFYVSCAQVE------IDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGNYEKGLGAL  340 (1074)
Q Consensus       267 ~~~~aa~~~~~~a~~e------i~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  340 (1074)
                      ..++|-.+|+.....+      +-.-+.-.....-+.+|+..|++-+.-+|+|  .+.-..+.++|.+ +|.++.|..  
T Consensus       538 ~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~e--s~v~~llgki~k~-~~~~~~Al~--  612 (638)
T KOG1126|consen  538 RKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQE--SSVFALLGKIYKR-LGNTDLALL--  612 (638)
T ss_pred             hhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcch--HHHHHHHHHHHHH-HccchHHHH--
Confidence            5555555555443221      0111222233344556666677777777765  2333466899999 899999988  


Q ss_pred             HHHHHHHhhccCcchhHHHHHHHHH
Q psy14927        341 NEAKRCLLKHNDSMYETLKSSVVEK  365 (1074)
Q Consensus       341 ~~~~~~~~~~~~~~~~i~~~~~~~~  365 (1074)
                       .=..-...-|+... |-.+.+++.
T Consensus       613 -~f~~A~~ldpkg~~-i~~k~~~~~  635 (638)
T KOG1126|consen  613 -HFSWALDLDPKGAQ-IQIKAAIER  635 (638)
T ss_pred             -hhHHHhcCCCccch-hhHHHHhhh
Confidence             33444455677665 555545543

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.54  E-value=0.00097  Score=86.19  Aligned_cols=45  Identities=22%  Similarity=0.127  Sum_probs=36.8

Q ss_pred             CCCeeeCCCCCCCCCCEEEecccCCC-CCcHHHHHHHHHHHHHHhh
Q psy14927       1027 KGRVPVNSRFQTVIPNIFAIGDCIHG-PMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1027 ~G~I~Vd~~~~ts~~~IyAiGD~~~~-~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                      .|.|.||.+++|++||+||+|||+.. ......+.-.|+.|+.+++
T Consensus       361 ~GGi~vd~~~~T~v~GLfAaGE~a~~~~nsl~~a~v~G~~Ag~~a~  406 (897)
T PRK13800        361 ASGVWVDEHARTTVPGLYAAGDLACVPHNYMIGAFVFGDLAGAHAA  406 (897)
T ss_pred             cceEEecCCCcccCCCeEechhccCcchhhhhhHHHhHHHHHHHHH
Confidence            47899999999999999999999764 3345567888888888764

>PRK07804 L-aspartate oxidase; Provisional

Probab=97.54  E-value=0.0005  Score=83.86  Aligned_cols=45  Identities=22%  Similarity=0.221  Sum_probs=33.1

Q ss_pred             CCCeeeCCCCCCCCCCEEEecccCC-C----CCc----HHHHHHHHHHHHHHhh
Q psy14927       1027 KGRVPVNSRFQTVIPNIFAIGDCIH-G----PML----AHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1027 ~G~I~Vd~~~~ts~~~IyAiGD~~~-~----~~~----~~~A~~~G~~aA~~I~ 1071 (1074)
                      -|.|.||..++|++||+||+|||+. +    ..+    ...+.-.|+.++.+++
T Consensus       357 ~GGi~vd~~~~t~i~GLyAaGe~~~~g~hGa~~l~~~sl~~~~v~G~~ag~~aa  410 (541)
T PRK07804        357 CGGVVTDVYGRTSVPGLYAAGEVACTGVHGANRLASNSLLEGLVVGERAGAAAA  410 (541)
T ss_pred             CCCEEECCCCcccCCCeEEcccccccccCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence            4778999999999999999999864 1    122    2345556777777765

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=97.53  E-value=0.00024  Score=81.60  Aligned_cols=59  Identities=17%  Similarity=0.403  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927        950 VAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus       950 ~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
                      +.+.+.+.+++.|+++++++++..+..+++++.+.+.+.. +|+.+++.+|+||-|-|..
T Consensus       113 l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~-~g~~~~i~adlvVgADG~~  171 (356)
T PF01494_consen  113 LDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGE-DGEEETIEADLVVGADGAH  171 (356)
T ss_dssp             HHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETC-TCEEEEEEESEEEE-SGTT
T ss_pred             HHHhhhhhhhhhhhhheeeeeccccccccccccccccccc-CCceeEEEEeeeecccCcc
Confidence            5567778888889999999999999988888777776643 4556689999999998865

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=97.51  E-value=0.00077  Score=80.50  Aligned_cols=65  Identities=20%  Similarity=0.316  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEec--CC-e--EEEEEeeccCCCCc---eEEEcCEEEEccCCcccCCcc
Q psy14927        948 GEVAKQFQRILGKQGMQFKLGTKVTGASKS--GD-N--ITVTIENVKDPTKK---EELSCDALLVCVGRRPYTHNL 1015 (1074)
Q Consensus       948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~--~~-~--~~v~~~~~~~~g~~---~~i~~D~vi~a~G~~p~~~~l 1015 (1074)
                      +.+...+.+.|+++||+|+++++|+++..+  ++ +  ..|.+..   +|++   ...+.|.||+++|.-....-+
T Consensus       226 eSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~---~~~~~~I~l~~~DlVivTnGs~t~ns~~  298 (576)
T PRK13977        226 ESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTR---NGKEETIDLTEDDLVFVTNGSITESSTY  298 (576)
T ss_pred             hHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEe---CCceeEEEecCCCEEEEeCCcCcccccc
Confidence            678888999999999999999999998864  22 2  3444443   2333   345799999999976544433

>TIGR00540 hemY_coli hemY protein

Probab=97.50  E-value=0.047  Score=64.45  Aligned_cols=259  Identities=14%  Similarity=0.087  Sum_probs=141.9

Q ss_pred             hcHHHHHHHhhc----CCChHHH-HHHHHHHHhccCHHHHHHHHHHh----hChhh-----hhhHhhccCCHHHHHHHHH
Q psy14927         35 ENTDKLEKYIIQ----SKDPVLL-KWWAQYIESTEDMDLAMKYYEEA----RDYLS-----MVRVLCFLQDFSRAAELAN  100 (1074)
Q Consensus        35 ~~~~~~~~~~~~----~~~~~l~-~~~a~~~e~~~~~~~A~~~y~~a----~d~~~-----~vr~l~~~~~~~~a~~i~~  100 (1074)
                      ++|..++..+.+    ..+|.+. ...|+.+...|+++.|.++|.++    ++..-     .++++...|+++.|.+..+
T Consensus        98 g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~  177 (409)
T TIGR00540        98 GDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVD  177 (409)
T ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            577766666655    2334444 34499999999999999999985    33321     3666777999998887765


Q ss_pred             -----hcCChHHHHHHHHHHHhcCChHHHHHHHHHhCCh----HHHHHHHHHhCchHHHHHHhhh-cCchhHHHHHHHHc
Q psy14927        101 -----ASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSC----GNAVRLCKEQALDDQLWNLALS-AGPSEQIEAATYLE  170 (1074)
Q Consensus       101 -----~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~----~~A~~la~~~~~~~~~~~l~~~-~~~~~~~~~A~~~e  170 (1074)
                           .+++..+...++..+..+||+++|++.+....+.    ++.+.-.+.. .+..++.-+.. ...+....+-+-+-
T Consensus       178 ~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~-a~~~~l~~~~~~~~~~~L~~~~~~~p  256 (409)
T TIGR00540       178 KLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQK-AEIGLLDEAMADEGIDGLLNWWKNQP  256 (409)
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHCC
Confidence                 3678888999999999999999999887766533    1112111110 01111111111 11112222222221


Q ss_pred             c---CC---hhHHHHHHHHhCChHHHHHHHHhhcc--CCcc-hHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHH
Q psy14927        171 T---IE---PDKAVLLYHKAGALHKALDLAFKLTL--SNSG-LVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAAN  241 (1074)
Q Consensus       171 ~---~~---~~~A~~ly~kaG~~~kAl~l~~~~~~--~~~~-~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~  241 (1074)
                      .   ++   ...-+.+|...|++.+|++++.+.-.  .|+. ..+.+...-..+..+|.+            .....+-.
T Consensus       257 ~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~------------~~~~~~e~  324 (409)
T TIGR00540       257 RHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNE------------KLEKLIEK  324 (409)
T ss_pred             HHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChH------------HHHHHHHH
Confidence            1   12   23455789999999999998877421  1110 000000000001122221            11222222


Q ss_pred             HHhcCCCCCCh--hHHHHHHHHHHccCCHHHHHHHHHHH---------------HhHHHHhhcCHHHHHHHHHHHHHHHH
Q psy14927        242 YLQSSDWKSQP--ELLKSIISFYSKGKAPHLLANFYVSC---------------AQVEIDEFGNYEKGLGALNEAKRCLL  304 (1074)
Q Consensus       242 yl~~~~~~~~~--~~~~~i~~~Y~k~~~~~~aa~~~~~~---------------a~~ei~e~~~y~~a~~~l~~a~~~l~  304 (1074)
                      .+..  ...+|  .....+..+|.+.|.|++|-.+++..               +..- ...|+.+.|...++++...+-
T Consensus       325 ~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll-~~~g~~~~A~~~~~~~l~~~~  401 (409)
T TIGR00540       325 QAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAF-DQAGDKAEAAAMRQDSLGLML  401 (409)
T ss_pred             HHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHh
Confidence            2222  24555  56666777788888888777766631               2222 455666666666666655554


Q ss_pred             hcCCC
Q psy14927        305 KHNDS  309 (1074)
Q Consensus       305 ~~~~~  309 (1074)
                      ..+.+
T Consensus       402 ~~~~~  406 (409)
T TIGR00540       402 AIQDN  406 (409)
T ss_pred             ccccc
Confidence            44433

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK08071 L-aspartate oxidase; Provisional

Probab=97.48  E-value=0.00061  Score=82.50  Aligned_cols=45  Identities=29%  Similarity=0.282  Sum_probs=34.9

Q ss_pred             CCeeeCCCCCCCCCCEEEecccCC-CC--------CcHHHHHHHHHHHHHHhhC
Q psy14927       1028 GRVPVNSRFQTVIPNIFAIGDCIH-GP--------MLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus      1028 G~I~Vd~~~~ts~~~IyAiGD~~~-~~--------~~~~~A~~~G~~aA~~I~~ 1072 (1074)
                      |.|.||.+.+|++||+||+|+|+. +.        .....+.-.|++|+.++..
T Consensus       333 GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~  386 (510)
T PRK08071        333 GGVKTNLDGETSIPGLYAIGEVACTGVHGANRLASNSLLEGLVFGKRAAEHILT  386 (510)
T ss_pred             CCEEECCCCcccCCCeEEcccccccccCCCcccchHHHHHHHHHHHHHHHHHHh
Confidence            679999999999999999999974 21        1345667778888888753

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.47  E-value=0.00028  Score=86.84  Aligned_cols=44  Identities=25%  Similarity=0.357  Sum_probs=32.7

Q ss_pred             CCeeeCCCCCC------CCCCEEEecccCC-C--------CCcHHHHHHHHHHHHHHhh
Q psy14927       1028 GRVPVNSRFQT------VIPNIFAIGDCIH-G--------PMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1028 G~I~Vd~~~~t------s~~~IyAiGD~~~-~--------~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                      |.|.||...+|      ++||+||+|+|+. +        ......|+-.|++|+.+++
T Consensus       352 GGi~vd~~~~~~~~~~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa  410 (575)
T PRK05945        352 GGIPVNTDGRVRRSADGLVEGFFAAGECACVSVHGANRLGSNSLLECVVYGRRTGAAIA  410 (575)
T ss_pred             CCeeECCCceeccCCCCccCCeEeeeccccccccccccccchhHHHHHHHHHHHHHHHH
Confidence            55777776665      7999999999875 2        1234667788888888875

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=97.47  E-value=0.00018  Score=84.27  Aligned_cols=100  Identities=13%  Similarity=0.068  Sum_probs=64.8

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhccccccccchh------------hhh------------hhhh--------
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLE------------TMM------------GTKS--------  838 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~------------~~~------------~~~~--------  838 (1074)
                      +|+||||||||+++|+.|++     +++|+.+..++...+.            ...            +...        
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG   80 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence            38999999999999999988     7788765443321110            000            0000        


Q ss_pred             -HHHhhhhhhHHHHhhhCCeEEEeeeEEEecC---CeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        839 -AAVKALTGGIAHLFKSNKVTQLNGHGKITGP---NTVTVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       839 -~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~---~~~~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                       -....+...+.+.+...|++++.++|+.+..   ....|++.+|  .+++++.||+|+|..+
T Consensus        81 ~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g--~~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        81 SVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGG--QRIQARLVIDARGFGP  141 (388)
T ss_pred             EEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCC--CEEEeCEEEECCCCch
Confidence             0002223335555566799998887777653   3456667777  6899999999999876

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=97.45  E-value=0.00066  Score=83.46  Aligned_cols=45  Identities=27%  Similarity=0.370  Sum_probs=35.7

Q ss_pred             CCCeeeCCCCCCCCCCEEEecccCC-C--------CCcHHHHHHHHHHHHHHhh
Q psy14927       1027 KGRVPVNSRFQTVIPNIFAIGDCIH-G--------PMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1027 ~G~I~Vd~~~~ts~~~IyAiGD~~~-~--------~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                      .|.|.||.+.+|++||+||+|+|+. +        ......|+-.|++|+.+++
T Consensus       358 ~GGi~vd~~~~t~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa  411 (582)
T PRK09231        358 MGGIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAA  411 (582)
T ss_pred             CCCEEECCCCccccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHH
Confidence            4779999999999999999999864 2        1234567778888888875

>PLN02697 lycopene epsilon cyclase

Probab=97.44  E-value=0.0005  Score=82.70  Aligned_cols=140  Identities=14%  Similarity=0.056  Sum_probs=78.1

Q ss_pred             HHHHhCCHHHHHHHHHHcCCCCchhhhhcCCCCC-CCccchhhhhhccccchHHHHHHHhh-----hhhhhccccc---c
Q psy14927        756 MYAIARRYDQALSLIQTKHVPLSEELADLLVPPE-SDDQRQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKG---V  826 (1074)
Q Consensus       756 ~y~~ag~~~~Ai~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g---~  826 (1074)
                      .|.+.|......--+++..+...++.+....++- +++...+|+||||||||+++|..+++     .++++.....   +
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~G  148 (529)
T PLN02697         69 DYIKAGGSELLFVQMQANKSMDEQSKIADKLPPISIGDGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYG  148 (529)
T ss_pred             hhhhccccchhHHHHHhcCCccccccccccCCCCCcccCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccc
Confidence            4566666554433344554443333333323322 33335679999999999999999999     5665532211   1


Q ss_pred             ccc-------hhhhhh------------hhh---------HHHhhhhhhHHHHhhhCCeEEEeeeEEEecC--CeEE-EE
Q psy14927        827 KLN-------LETMMG------------TKS---------AAVKALTGGIAHLFKSNKVTQLNGHGKITGP--NTVT-VI  875 (1074)
Q Consensus       827 ~~~-------~~~~~~------------~~~---------~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~--~~~~-v~  875 (1074)
                      .+.       +.....            ...         -....+...+.+.+...||+++.++|+.+..  +... ++
T Consensus       149 vW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~  228 (529)
T PLN02697        149 VWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVA  228 (529)
T ss_pred             cchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEE
Confidence            100       000000            000         0001222334555566799997778877752  3333 34


Q ss_pred             eCCCCeeEEEcCeEEEccCCCC
Q psy14927        876 KSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       876 ~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                      +.+|  .++.++.||+|+|..+
T Consensus       229 ~~dG--~~i~A~lVI~AdG~~S  248 (529)
T PLN02697        229 CEDG--RVIPCRLATVASGAAS  248 (529)
T ss_pred             EcCC--cEEECCEEEECCCcCh
Confidence            5666  5799999999999875

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=97.44  E-value=0.00035  Score=77.93  Aligned_cols=158  Identities=22%  Similarity=0.275  Sum_probs=78.4

Q ss_pred             hhcCCHHHHHHHHHHcCcccc--h----hhhHhh--hcHHHHHHHhhc-------CCChHHHHHHHHHHHhccCHHHHHH
Q psy14927          7 MKNGDIDRAIRMFEKAETHQQ--H----VPRMLL--ENTDKLEKYIIQ-------SKDPVLLKWWAQYIESTEDMDLAMK   71 (1074)
Q Consensus         7 ~~~g~~~eA~~~Ye~~~~~~~--~----~~~~~~--~~~~~~~~~~~~-------~~~~~l~~~~a~~~e~~~~~~~A~~   71 (1074)
                      -..+++++|+++++++=....  .    ...++.  ++|.++.+++.+       ..++.+|..+|.++...|++++|++
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~  167 (280)
T PF13429_consen   88 LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR  167 (280)
T ss_dssp             ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred             cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            356778888877776522221  1    122222  467776666666       4567788888999999999999998


Q ss_pred             HHHHhhCh--------hhhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHH
Q psy14927         72 YYEEARDY--------LSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAV  138 (1074)
Q Consensus        72 ~y~~a~d~--------~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~  138 (1074)
                      +|.++=..        .+.+.+|...|+.+++.++++.     ..++.....+|..|...|+.++|+.+|.++..     
T Consensus       168 ~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~-----  242 (280)
T PF13429_consen  168 DYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK-----  242 (280)
T ss_dssp             HHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH-----
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc-----
Confidence            88875332        3345567778888886666542     34556667788888888888888887765321     


Q ss_pred             HHHHHhCchHHHHHHhhhcCchhHHHHHHHHcc-CChhHHHHHHHHh
Q psy14927        139 RLCKEQALDDQLWNLALSAGPSEQIEAATYLET-IEPDKAVLLYHKA  184 (1074)
Q Consensus       139 ~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~-~~~~~A~~ly~ka  184 (1074)
                           .          ....+..+...|+.++. |++++|..+|.++
T Consensus       243 -----~----------~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~  274 (280)
T PF13429_consen  243 -----L----------NPDDPLWLLAYADALEQAGRKDEALRLRRQA  274 (280)
T ss_dssp             -----H----------STT-HHHHHHHHHHHT---------------
T ss_pred             -----c----------ccccccccccccccccccccccccccccccc
Confidence                 1          12334556678888888 7788888888764

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.44  E-value=0.0014  Score=80.72  Aligned_cols=44  Identities=23%  Similarity=0.326  Sum_probs=30.6

Q ss_pred             CCeeeCCCCC------CCCCCEEEecccCC-C--------CCcHHHHHHHHHHHHHHhh
Q psy14927       1028 GRVPVNSRFQ------TVIPNIFAIGDCIH-G--------PMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1028 G~I~Vd~~~~------ts~~~IyAiGD~~~-~--------~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                      |.|.+|...+      |++||+||+|+|+. +        ......|.-.|++|+.+++
T Consensus       357 GGi~id~~~~v~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa  415 (583)
T PRK08205        357 GGIPTTVDGEVLRDNTTVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAA  415 (583)
T ss_pred             CCeeECCCceEecCCCCCcCCeeeccccccCCCCCCcCCchhhHHHHHHHHHHHHHHHH
Confidence            4555665555      68999999999875 2        1134557778888888765

>TIGR00275 flavoprotein, HI0933 family

Probab=97.44  E-value=0.00063  Score=79.87  Aligned_cols=81  Identities=17%  Similarity=0.199  Sum_probs=59.6

Q ss_pred             hhHHhhcCCcEEEEecCCccC-CCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcC
Q psy14927        922 GSVWGRLGAEVTAIEFMNAIG-GMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCD 1000 (1074)
Q Consensus       922 A~~l~~~G~~Vtlv~~~~~~~-~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D 1000 (1074)
                      ..++...|.+++....+ ++. .......+.+.+.+.+++.||++++++.+.++..+++.+.+++ +      +.++.+|
T Consensus        79 ~~~~~~~Gv~~~~~~~g-~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~------~~~i~ad  150 (400)
T TIGR00275        79 IDFFESLGLELKVEEDG-RVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-S------GGEYEAD  150 (400)
T ss_pred             HHHHHHcCCeeEEecCC-EeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-C------CcEEEcC
Confidence            45667889888876533 333 1224477888889999999999999999999987655555543 2      2468999


Q ss_pred             EEEEccCCcc
Q psy14927       1001 ALLVCVGRRP 1010 (1074)
Q Consensus      1001 ~vi~a~G~~p 1010 (1074)
                      .||+|+|...
T Consensus       151 ~VIlAtG~~s  160 (400)
T TIGR00275       151 KVILATGGLS  160 (400)
T ss_pred             EEEECCCCcc
Confidence            9999999754

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=97.43  E-value=0.00021  Score=80.01  Aligned_cols=101  Identities=20%  Similarity=0.099  Sum_probs=63.3

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhccccccccc-------------------------------------hhhh
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLN-------------------------------------LETM  833 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~-------------------------------------~~~~  833 (1074)
                      +|+||||||+|+++|+.|++     +++|+.+..+....                                     ....
T Consensus         2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (295)
T TIGR02032         2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIE   81 (295)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccC
Confidence            48999999999999999998     77887654322100                                     0000


Q ss_pred             hh-hhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEe--cCCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        834 MG-TKSAAVKALTGGIAHLFKSNKVTQLNG-HGKIT--GPNTVTVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       834 ~~-~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~i--d~~~~~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                      .. ...-....+...+.+.+.+.|++++.+ +++.+  +++.+.+.+.++ ..++++|+||+|+|...
T Consensus        82 ~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~a~~vv~a~G~~s  148 (295)
T TIGR02032        82 TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGG-EGTVTAKIVIGADGSRS  148 (295)
T ss_pred             CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCc-cEEEEeCEEEECCCcch
Confidence            00 000001233344666677789999888 45553  345555555443 25799999999999864

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=97.42  E-value=0.075  Score=68.88  Aligned_cols=125  Identities=11%  Similarity=0.043  Sum_probs=69.2

Q ss_pred             hhhcCCHHHHHHHHHHcCcccc-h-hhh--------Hhhh-----cHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHH
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQ-H-VPR--------MLLE-----NTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAM   70 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~-~-~~~--------~~~~-----~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~   70 (1074)
                      +.++|++++|.++|+.+-.... . ++.        +|..     ...++..+.+....+..-.|.++..+.+..++.+.
T Consensus       386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (987)
T PRK09782        386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIV  465 (987)
T ss_pred             HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHH
Confidence            4678999999999999876321 2 211        1222     24566666555555555566666666666555555


Q ss_pred             HHHHHhhC------hhhhhhHhhccCCHHHHHHHHH----hcCChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927         71 KYYEEARD------YLSMVRVLCFLQDFSRAAELAN----ASGDTAAAYHLARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus        71 ~~y~~a~d------~~~~vr~l~~~~~~~~a~~i~~----~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                      +.....-+      +.++..++.. +++++|....+    ...+......+|..+...|++++|+..|.++
T Consensus       466 ~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka  535 (987)
T PRK09782        466 RLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKI  535 (987)
T ss_pred             HhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            55543222      2334444443 56666666332    1222223334456666777777777766543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=97.42  E-value=0.057  Score=69.08  Aligned_cols=115  Identities=13%  Similarity=-0.008  Sum_probs=64.9

Q ss_pred             HHHHHHHHhcCCCCC--ChhHHHH-HHHHHHccCCHHHHHHHHHHHHhHH-----------------HHhhcCHHHHHHH
Q psy14927        236 YVMAANYLQSSDWKS--QPELLKS-IISFYSKGKAPHLLANFYVSCAQVE-----------------IDEFGNYEKGLGA  295 (1074)
Q Consensus       236 ~~~aa~yl~~~~~~~--~~~~~~~-i~~~Y~k~~~~~~aa~~~~~~a~~e-----------------i~e~~~y~~a~~~  295 (1074)
                      +..|...++.+....  .|..... +...|...+++++|...|..+.+..                 ..+-|+|++|...
T Consensus       253 ~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~  332 (765)
T PRK10049        253 YKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTV  332 (765)
T ss_pred             HHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence            445555565542222  3544333 5778889999999988887763321                 0133667777776


Q ss_pred             HHHHHHHHHh------cCCCchHHHHHHHHHHHHHHHHhhcCChHHHhhHHHHHHHHHhhccCcc
Q psy14927        296 LNEAKRCLLK------HNDSMYETLKSSVVEKLAEVEIDEFGNYEKGLGALNEAKRCLLKHNDSM  354 (1074)
Q Consensus       296 l~~a~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  354 (1074)
                      |..+...-..      .....|++-..........+++. .|+.+.|+..|.++..   ..|++.
T Consensus       333 l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~-~g~~~eA~~~l~~al~---~~P~n~  393 (765)
T PRK10049        333 TAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY-SNDLPQAEMRARELAY---NAPGNQ  393 (765)
T ss_pred             HHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH---hCCCCH
Confidence            6655543211      01122332222233344566667 6999999998777644   366663

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.40  E-value=0.0041  Score=73.09  Aligned_cols=154  Identities=18%  Similarity=0.126  Sum_probs=108.0

Q ss_pred             hcHHH------HHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHH
Q psy14927         35 ENTDK------LEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAA  108 (1074)
Q Consensus        35 ~~~~~------~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~  108 (1074)
                      ++++.      ..+++++.. +......+.++++.|-++.|+++   +.|-+..-.+-..+|+++.|.+++++..+..-.
T Consensus       275 ~d~~~v~~~i~~~~ll~~i~-~~~~~~i~~fL~~~G~~e~AL~~---~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W  350 (443)
T PF04053_consen  275 GDFEEVLRMIAASNLLPNIP-KDQGQSIARFLEKKGYPELALQF---VTDPDHRFELALQLGNLDIALEIAKELDDPEKW  350 (443)
T ss_dssp             T-HHH-----HHHHTGGG---HHHHHHHHHHHHHTT-HHHHHHH---SS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHH
T ss_pred             CChhhhhhhhhhhhhcccCC-hhHHHHHHHHHHHCCCHHHHHhh---cCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHH
Confidence            35666      356666555 77888999999999999999976   677776667788999999999999999999999


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCc--hhHHHHHHHHccCChhHHHHHHHHhCC
Q psy14927        109 YHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGP--SEQIEAATYLETIEPDKAVLLYHKAGA  186 (1074)
Q Consensus       109 ~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~--~~~~~~A~~~e~~~~~~A~~ly~kaG~  186 (1074)
                      .+||....++|+++-|.+.|.+++.|+.-.=|.-..|..+.+-.++..+..  ......-.+|-.|+.++-+++..++|+
T Consensus       351 ~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~~~~lgd~~~cv~lL~~~~~  430 (443)
T PF04053_consen  351 KQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQAALLLGDVEECVDLLIETGR  430 (443)
T ss_dssp             HHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHHTT-
T ss_pred             HHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence            999999999999999999999999999988888877766666555433221  112222233333555555555555555


Q ss_pred             hHHHHH
Q psy14927        187 LHKALD  192 (1074)
Q Consensus       187 ~~kAl~  192 (1074)
                      +..|.=
T Consensus       431 ~~~A~~  436 (443)
T PF04053_consen  431 LPEAAL  436 (443)
T ss_dssp             HHHHHH
T ss_pred             chHHHH
Confidence            555543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK06847 hypothetical protein; Provisional

Probab=97.39  E-value=0.0011  Score=77.30  Aligned_cols=57  Identities=23%  Similarity=0.294  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcc
Q psy14927        948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRP 1010 (1074)
Q Consensus       948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p 1010 (1074)
                      +.+.+.+.+.+.+.|++++.++++++++.+++++.+.+.+      +.++.+|.||.|.|..+
T Consensus       107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~------g~~~~ad~vI~AdG~~s  163 (375)
T PRK06847        107 PALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSD------GTTGRYDLVVGADGLYS  163 (375)
T ss_pred             HHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcC------CCEEEcCEEEECcCCCc
Confidence            4566777777888899999999999998876776676654      35799999999999754

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=97.35  E-value=0.0012  Score=81.06  Aligned_cols=45  Identities=24%  Similarity=0.334  Sum_probs=35.4

Q ss_pred             CCCeeeCCCCCCCCCCEEEecccCC-C--------CCcHHHHHHHHHHHHHHhh
Q psy14927       1027 KGRVPVNSRFQTVIPNIFAIGDCIH-G--------PMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1027 ~G~I~Vd~~~~ts~~~IyAiGD~~~-~--------~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                      .|.|.+|...+|++||+||+|+|+. +        ......|+-.|++|+.+++
T Consensus       357 ~GGi~~d~~~~t~i~GLyAaGe~a~~G~hGanrl~g~sl~~~~v~G~~ag~~aa  410 (580)
T TIGR01176       357 MGGIETDINCETRIKGLFAVGECASVGLHGANRLGSNSLAELVVFGRRAGEAAA  410 (580)
T ss_pred             CCCeeECcCcccccCCeEeeecccccCcCCCccccchhHHHHHHHHHHHHHHHH
Confidence            3668999999999999999999864 2        1245567888888888875

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.35  E-value=0.016  Score=62.96  Aligned_cols=219  Identities=22%  Similarity=0.221  Sum_probs=129.3

Q ss_pred             hChhhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHH
Q psy14927         77 RDYLSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLW  151 (1074)
Q Consensus        77 ~d~~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~  151 (1074)
                      .||..=+.+| -.+++++|.++-.     ++...++..-+++.|.+.|+++.||.+..-.                    
T Consensus        37 r~Yv~GlNfL-Ls~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L--------------------   95 (389)
T COG2956          37 RDYVKGLNFL-LSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTL--------------------   95 (389)
T ss_pred             HHHHhHHHHH-hhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHH--------------------
Confidence            3443334433 3457788876543     4567788889999999999999999864321                    


Q ss_pred             HHhhhcCchhHHHHHHHHccCC--hhHHHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHHh----cCCChhhHHH
Q psy14927        152 NLALSAGPSEQIEAATYLETIE--PDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLL----KSGDTNKIIF  225 (1074)
Q Consensus       152 ~l~~~~~~~~~~~~A~~~e~~~--~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~----~~~~~~~~i~  225 (1074)
                         .+++.-.       |+++.  ..+=++=|+.+|-+.+|-+++..+...+   -|...|.+-|+    +..+|+|+|+
T Consensus        96 ---~~spdlT-------~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~---efa~~AlqqLl~IYQ~treW~KAId  162 (389)
T COG2956          96 ---LESPDLT-------FEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG---EFAEGALQQLLNIYQATREWEKAID  162 (389)
T ss_pred             ---hcCCCCc-------hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch---hhhHHHHHHHHHHHHHhhHHHHHHH
Confidence               1111100       11111  2344566889999999999988864210   12233444442    2455555555


Q ss_pred             hhhhcchHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHhHHHHhhcCHHHHHHHHHHHHHHHHh
Q psy14927        226 FAGVSRMKEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLK  305 (1074)
Q Consensus       226 ~a~~~r~~~l~~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~  305 (1074)
                      .|..+-             +.+  +. +             .--+.|.||...|+.. .--.|.++|...|..|++.=.+
T Consensus       163 ~A~~L~-------------k~~--~q-~-------------~~~eIAqfyCELAq~~-~~~~~~d~A~~~l~kAlqa~~~  212 (389)
T COG2956         163 VAERLV-------------KLG--GQ-T-------------YRVEIAQFYCELAQQA-LASSDVDRARELLKKALQADKK  212 (389)
T ss_pred             HHHHHH-------------HcC--Cc-c-------------chhHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHhhCcc
Confidence            443221             111  11 1             1124567778888888 6777888888888777654332


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHhhcCChHHHhhHHHHHHHHHhhccCcchhHHHHHHHHHHHHHhhhh
Q psy14927        306 HNDSMYETLKSSVVEKLAEVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKIAEVDKYL  373 (1074)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  373 (1074)
                      +       .+.+  +++.++++. -|+|.+|++-|.++.+-   -|+ .++.+-....+|+.++.+--
T Consensus       213 c-------vRAs--i~lG~v~~~-~g~y~~AV~~~e~v~eQ---n~~-yl~evl~~L~~~Y~~lg~~~  266 (389)
T COG2956         213 C-------VRAS--IILGRVELA-KGDYQKAVEALERVLEQ---NPE-YLSEVLEMLYECYAQLGKPA  266 (389)
T ss_pred             c-------eehh--hhhhHHHHh-ccchHHHHHHHHHHHHh---ChH-HHHHHHHHHHHHHHHhCCHH
Confidence            2       1222  234566667 69999999988877543   343 34444456888997665543

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=97.34  E-value=0.0016  Score=81.08  Aligned_cols=44  Identities=14%  Similarity=0.181  Sum_probs=33.7

Q ss_pred             CCeeeCCCCCC-CCCCEEEecccCCC---------CCcHHHHHHHHHHHHHHhh
Q psy14927       1028 GRVPVNSRFQT-VIPNIFAIGDCIHG---------PMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1028 G~I~Vd~~~~t-s~~~IyAiGD~~~~---------~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                      |.|.||.+.+| ++||+||+|+|+..         ......++-.|++|+.+++
T Consensus       373 GGi~vd~~~~t~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~iAg~~aa  426 (657)
T PRK08626        373 GGIRTNPTGESYGLKGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIVGKYVA  426 (657)
T ss_pred             CCceECCCCCCcccCCEEecccccccCCCCCCccchHHHHHHHHHHHHHHHHHH
Confidence            66899999999 59999999999741         1134567778888887765

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.34  E-value=0.0004  Score=88.38  Aligned_cols=136  Identities=20%  Similarity=0.246  Sum_probs=85.9

Q ss_pred             HhhhhhccccccccccCCceEEeccchh------hcc------HHHHhccccccccccccccccccccccCCcceEEEEe
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWT------LLS------LARVLEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLG  436 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (1074)
                      +++.+.+..|+.+|||..|||.+||..-      |+.      ...|+.++......|+....+                
T Consensus       257 ~~~~G~I~VD~~l~Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i~g~~~~~~g~~~~----------------  320 (847)
T PRK14989        257 VAPRGGIVINDSCQTSDPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHLLGSENAFEGADLS----------------  320 (847)
T ss_pred             CCCCCcEEECCCCcCCCCCEEEeecceeEcCcccccHHHHHHHHHHHHHHhcCCCcCCCCcccc----------------
Confidence            5677789999999999999999999831      121      222344444332223322222                


Q ss_pred             ccCCCcccccccccCCCcEEEEeeccCccc-----hhh--hcCCCcceEEEEEECCCCcEEEEEEeCCCh--hHHHHHHH
Q psy14927        437 DKLTDKVLGVHIIGPGIEYKVGKFPFAANS-----RAK--TNNDTDGFVKVLGDKLTDKVLGVHIIGPAA--GELINEAV  507 (1074)
Q Consensus       437 ~~~~~~~lg~~~~~~g~~~~v~~~~~~~~~-----ra~--~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a--~eli~~~a  507 (1074)
                               ..++..|++  +..+. ...+     .+.  ....+.++.|+++++++++|||++++|+.+  +++++.+.
T Consensus       321 ---------~~lk~~G~~--v~s~G-~~~~~~~~~~~~~~~~~~~~~y~Klv~~~~~~~LlGa~lvGd~~~~~~l~~~~~  388 (847)
T PRK14989        321 ---------AKLKLLGVD--VGGIG-DAHGRTPGARSYVYLDESKEIYKRLIVSEDNKTLLGAVLVGDTSDYGNLLQLVL  388 (847)
T ss_pred             ---------eEEEECCcc--eEecc-cccCCCCCceeEEEEcCCCCEEEEEEEECCCCEEEEEEEECCHHHHHHHHHHHH
Confidence                     111112221  11111 0011     122  123457899999999999999999999965  99998888


Q ss_pred             HHHHcCCCHHHHhhhccc---CCccccc
Q psy14927        508 LAMEYGASCEDVARTCHA---HPTVCVE  532 (1074)
Q Consensus       508 ~a~~~~~~~~~l~~~~~~---hPt~s~e  532 (1074)
                      .++..+.+.++|....++   ||+.+.+
T Consensus       389 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~  416 (847)
T PRK14989        389 NAIELPENPDSLILPAHAGSGKPSIGVD  416 (847)
T ss_pred             cCCCCccchhheecCCCCCCCCCccccc
Confidence            888888888888777765   8887443

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=97.31  E-value=0.00034  Score=79.93  Aligned_cols=48  Identities=23%  Similarity=0.365  Sum_probs=34.7

Q ss_pred             hhHHHHhhh-CCeEEEeeeEEEecC---CeEEEEeCCCCeeEEEcCeEEEccCC
Q psy14927        846 GGIAHLFKS-NKVTQLNGHGKITGP---NTVTVIKSDGSTEEVKTKNILIATGS  895 (1074)
Q Consensus       846 ~~~~~~l~~-~gV~~~~g~v~~id~---~~~~v~~~~G~~~~i~~d~lIIATG~  895 (1074)
                      ..+.+.+.. .+++++.++|+.+..   .-..|.+.+|  ..+.+|.||||||+
T Consensus        99 ~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g--~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   99 RAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDG--EEIEADAVVLATGT  150 (392)
T ss_dssp             HHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTS--EEEEECEEEE-TTT
T ss_pred             HHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCC--CEEecCEEEEeccc
Confidence            335555555 689999998888753   2345667888  78999999999998

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=97.28  E-value=0.00025  Score=77.68  Aligned_cols=102  Identities=18%  Similarity=0.133  Sum_probs=62.2

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhccccccccch-----hhhh--------------------hh-hhHHHhhh
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNL-----ETMM--------------------GT-KSAAVKAL  844 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~-----~~~~--------------------~~-~~~~~~~l  844 (1074)
                      +|+||||||+|+.||+.+++     .++|+....|+.+.-     +...                    .. .......+
T Consensus        27 DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~~l  106 (257)
T PRK04176         27 DVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSVEA  106 (257)
T ss_pred             CEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHHHH
Confidence            49999999999999999998     788887765543210     0000                    00 00011233


Q ss_pred             hhhHHHHhhhCCeEEEee-eEEEec--CC-eE-EEEeC------CC---CeeEEEcCeEEEccCCCC
Q psy14927        845 TGGIAHLFKSNKVTQLNG-HGKITG--PN-TV-TVIKS------DG---STEEVKTKNILIATGSEV  897 (1074)
Q Consensus       845 ~~~~~~~l~~~gV~~~~g-~v~~id--~~-~~-~v~~~------~G---~~~~i~~d~lIIATG~~p  897 (1074)
                      ...+.+...+.|++++.+ +|+.+.  ++ .+ -+...      +|   +..++.++.||+|||...
T Consensus       107 ~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a  173 (257)
T PRK04176        107 AAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA  173 (257)
T ss_pred             HHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence            444666667789999998 455542  22 11 11111      11   235799999999999753

>KOG0547|consensus

Probab=97.26  E-value=0.02  Score=65.25  Aligned_cols=331  Identities=18%  Similarity=0.145  Sum_probs=160.8

Q ss_pred             hhcCCHHHHHHHHHHcCcccchh-------hhHh--hhcHHHHHHHhhc-----CCChHHHHHHHHHHHhccCHHHHHHH
Q psy14927          7 MKNGDIDRAIRMFEKAETHQQHV-------PRML--LENTDKLEKYIIQ-----SKDPVLLKWWAQYIESTEDMDLAMKY   72 (1074)
Q Consensus         7 ~~~g~~~eA~~~Ye~~~~~~~~~-------~~~~--~~~~~~~~~~~~~-----~~~~~l~~~~a~~~e~~~~~~~A~~~   72 (1074)
                      -.+|+|++||++|.++-..+..=       ...|  +++|.++.+...+     ++-.+-+...|...|..|++.+|+. 
T Consensus       126 f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~-  204 (606)
T KOG0547|consen  126 FRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALF-  204 (606)
T ss_pred             hhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHH-
Confidence            35789999999999987655441       2223  4789888887776     3444566667889999999999872 


Q ss_pred             HHHhhChhhhhhHhhccCCHH------HHHHHHHhc--------------CChHHHHHHHHHHHh-----------cC--
Q psy14927         73 YEEARDYLSMVRVLCFLQDFS------RAAELANAS--------------GDTAAAYHLARQYEN-----------SG--  119 (1074)
Q Consensus        73 y~~a~d~~~~vr~l~~~~~~~------~a~~i~~~~--------------~~~~~~~~la~~~~~-----------~g--  119 (1074)
                           |    +-++|.++.++      .++++.++.              .-..++..++.||-.           .+  
T Consensus       205 -----D----~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~k  275 (606)
T KOG0547|consen  205 -----D----VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDK  275 (606)
T ss_pred             -----h----hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCcc
Confidence                 1    12233333322      223332211              122456667766651           11  


Q ss_pred             ---ChHHHHHHHHHh--CChHHHHHHHHHhCchHHH-------------HHHhhhcCchhHHHHHHHHcc-CChhHHHHH
Q psy14927        120 ---QFDEAIHFYSVA--GSCGNAVRLCKEQALDDQL-------------WNLALSAGPSEQIEAATYLET-IEPDKAVLL  180 (1074)
Q Consensus       120 ---~~~~Ai~~y~~a--~~~~~A~~la~~~~~~~~~-------------~~l~~~~~~~~~~~~A~~~e~-~~~~~A~~l  180 (1074)
                         ...++.+.+-..  ..|..|.+.|.+-..+.+-             +..++..+-.-.+-.+.++.. .++++||+|
T Consensus       276 sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l  355 (606)
T KOG0547|consen  276 SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL  355 (606)
T ss_pred             chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc
Confidence               124555544433  2467777777665322211             111111111111112222233 235666665


Q ss_pred             HHHhCC-hHHHHHHHHhhc----------------cCCcchHHHHHHHHHHhc-----CCChhhHHHhhhhcchHHHHHH
Q psy14927        181 YHKAGA-LHKALDLAFKLT----------------LSNSGLVFQIKAMKCLLK-----SGDTNKIIFFAGVSRMKEIYVM  238 (1074)
Q Consensus       181 y~kaG~-~~kAl~l~~~~~----------------~~~~~~~~~~~a~k~l~~-----~~~~~~~i~~a~~~r~~~l~~~  238 (1074)
                      ..+-.+ |-+=.-++.+..                ..++.+||+=.=|+.|+.     ..|.+|+|.+.-..--+-+---
T Consensus       356 ~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~  435 (606)
T KOG0547|consen  356 DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLC  435 (606)
T ss_pred             CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHH
Confidence            544444 111111111111                122345554444444432     2233333322211111111001


Q ss_pred             HHHHHhc-------------CCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHhHHHHhhcCHHH-------------H
Q psy14927        239 AANYLQS-------------SDWKSQPELLKSIISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEK-------------G  292 (1074)
Q Consensus       239 aa~yl~~-------------~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~a~~ei~e~~~y~~-------------a  292 (1074)
                      .+.|=++             .-...-|..+....+..+--++|++|.+.|+.+-.+|=.+.+-|-.             |
T Consensus       436 ~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw  515 (606)
T KOG0547|consen  436 CALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW  515 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch
Confidence            1111111             1234456666777777778888888888888887776332222211             2


Q ss_pred             HHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHhhcCChHHHhhHHHHHHHHHhhcc
Q psy14927        293 LGALNEAKRCLLKHND-SMYETLKSSVVEKLAEVEIDEFGNYEKGLGALNEAKRCLLKHN  351 (1074)
Q Consensus       293 ~~~l~~a~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  351 (1074)
                      ..=+..|.+.|.++-. ..+.++--.   .+.-+.+. +|+.+.||.|..++++.++.-.
T Consensus       516 k~d~~~a~~Ll~KA~e~Dpkce~A~~---tlaq~~lQ-~~~i~eAielFEksa~lArt~~  571 (606)
T KOG0547|consen  516 KEDINQAENLLRKAIELDPKCEQAYE---TLAQFELQ-RGKIDEAIELFEKSAQLARTES  571 (606)
T ss_pred             hhhHHHHHHHHHHHHccCchHHHHHH---HHHHHHHH-HhhHHHHHHHHHHHHHHHHhHH
Confidence            2223344444444311 222121110   12445556 7999999999999999876654

>PRK08163 salicylate hydroxylase; Provisional

Probab=97.25  E-value=0.0016  Score=76.39  Aligned_cols=54  Identities=24%  Similarity=0.398  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHhC-CCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927        950 VAKQFQRILGKQ-GMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus       950 ~~~~~~~~l~~~-gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
                      +.+.+.+.+.+. +|+++.++.++++..+++++.+++.+      +.++.+|.||.|.|..
T Consensus       111 l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~------g~~~~ad~vV~AdG~~  165 (396)
T PRK08163        111 IHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQ------GNRWTGDALIGCDGVK  165 (396)
T ss_pred             HHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcC------CCEEecCEEEECCCcC
Confidence            344555666555 59999999999998766666666544      3579999999999864

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.24  E-value=0.0068  Score=64.26  Aligned_cols=123  Identities=19%  Similarity=0.253  Sum_probs=56.2

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchhhhH-------h--hhcHHHHHHHhhc-----CCChHHHHHHHHHHHhccCHHHHHH
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHVPRM-------L--LENTDKLEKYIIQ-----SKDPVLLKWWAQYIESTEDMDLAMK   71 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~-------~--~~~~~~~~~~~~~-----~~~~~l~~~~a~~~e~~~~~~~A~~   71 (1074)
                      +...|++++|+..|+++-..+...+..       +  .++++.+..+..+     +.++..+..++..+...|++++|.+
T Consensus        41 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~  120 (234)
T TIGR02521        41 YLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQ  120 (234)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHH
Confidence            446778888888887764332111111       1  1233333333322     2334445555555555555555555


Q ss_pred             HHHHhhC----------hhhhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHHHHHhcCChHHHHHHH
Q psy14927         72 YYEEARD----------YLSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLARQYENSGQFDEAIHFY  128 (1074)
Q Consensus        72 ~y~~a~d----------~~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~~~~~~g~~~~Ai~~y  128 (1074)
                      +|.++-+          +..+..++...|++++|.+...+     +.+......+|..+...|++++|+++|
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  192 (234)
T TIGR02521       121 QFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYL  192 (234)
T ss_pred             HHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence            5555422          11223334444555555444331     122334444455555555555554443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK06184 hypothetical protein; Provisional

Probab=97.23  E-value=0.0026  Score=77.23  Aligned_cols=57  Identities=19%  Similarity=0.402  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927        950 VAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus       950 ~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
                      +.+.+.+.+.+.||++++++++++++.+++++.+++.+   .+.+.++.+|.||.|.|..
T Consensus       111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~---~~~~~~i~a~~vVgADG~~  167 (502)
T PRK06184        111 TERILRERLAELGHRVEFGCELVGFEQDADGVTARVAG---PAGEETVRARYLVGADGGR  167 (502)
T ss_pred             HHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEe---CCCeEEEEeCEEEECCCCc
Confidence            44566677788899999999999999877777777654   2335689999999998854

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=97.22  E-value=0.0026  Score=78.83  Aligned_cols=34  Identities=21%  Similarity=0.339  Sum_probs=26.2

Q ss_pred             CCCCCEEEecccCC-C--------CCcHHHHHHHHHHHHHHhh
Q psy14927       1038 TVIPNIFAIGDCIH-G--------PMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1038 ts~~~IyAiGD~~~-~--------~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                      |++||+||+|+|+. +        ......|+-.|++|+.+++
T Consensus       421 t~IpGLYAaGE~a~~g~hGanRlggnsL~~a~vfGr~Ag~~aa  463 (635)
T PLN00128        421 AVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVA  463 (635)
T ss_pred             CccCceEeeeccccccCCCCCCCchhhHHHHHHHHHHHHHHHH
Confidence            68999999999974 2        1245677888888888875

>KOG2076|consensus

Probab=97.22  E-value=0.026  Score=68.75  Aligned_cols=263  Identities=19%  Similarity=0.168  Sum_probs=152.8

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchhhhHh--hh-------cH------HHHHHHhhcCCChHHHHHHHHHHHhccCHHHHH
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHVPRML--LE-------NT------DKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAM   70 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~--~~-------~~------~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~   70 (1074)
                      |-..|++++|.++....=+.+..++.-|  ++       +-      ..+..-+. ++++.+|..||+..++.|+++.|.
T Consensus       149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~  227 (895)
T KOG2076|consen  149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQAR  227 (895)
T ss_pred             HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHH
Confidence            4557999999999988877766654444  11       11      11111111 567799999999999999999999


Q ss_pred             HHHHHhhC-----hhhhh---hHhhccCCHHHHHHHHH----hcC------ChHHHHHHHHHHHhcCChHHHHHHHHHhC
Q psy14927         71 KYYEEARD-----YLSMV---RVLCFLQDFSRAAELAN----ASG------DTAAAYHLARQYENSGQFDEAIHFYSVAG  132 (1074)
Q Consensus        71 ~~y~~a~d-----~~~~v---r~l~~~~~~~~a~~i~~----~~~------~~~~~~~la~~~~~~g~~~~Ai~~y~~a~  132 (1074)
                      -||.+|=.     |....   -+|.++|+..+|.+--.    -.+      -.+..+.++++|...++-+.|++.+    
T Consensus       228 ~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l----  303 (895)
T KOG2076|consen  228 YCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL----  303 (895)
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH----
Confidence            99988633     32222   23556676666644222    111      1134445566666666555555432    


Q ss_pred             ChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHccCChhHHHHHHHHhCChHHHHHHHHhhcc----CCc------
Q psy14927        133 SCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLETIEPDKAVLLYHKAGALHKALDLAFKLTL----SNS------  202 (1074)
Q Consensus       133 ~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~~~~~A~~ly~kaG~~~kAl~l~~~~~~----~~~------  202 (1074)
                        +.|+.  +..          ...+-            -+..-.+.+|++-.++.+|+.......-    .|+      
T Consensus       304 --e~~~s--~~~----------~~~~~------------ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~  357 (895)
T KOG2076|consen  304 --EGALS--KEK----------DEASL------------EDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD  357 (895)
T ss_pred             --HHHHh--hcc----------ccccc------------cHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh
Confidence              12221  000          00111            1233455566666666666555443210    000      


Q ss_pred             ---------------chHH--HH-HHHHHHhc---------------------CCChhhHHHhhhhcchHHHHHHHHHHH
Q psy14927        203 ---------------GLVF--QI-KAMKCLLK---------------------SGDTNKIIFFAGVSRMKEIYVMAANYL  243 (1074)
Q Consensus       203 ---------------~~~~--~~-~a~k~l~~---------------------~~~~~~~i~~a~~~r~~~l~~~aa~yl  243 (1074)
                                     ++-+  .+ +=|=||..                     +.+++...++|..+.+.+-|..|.+||
T Consensus       358 ~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l  437 (895)
T KOG2076|consen  358 ERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLL  437 (895)
T ss_pred             hhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHH
Confidence                           0001  11 22333311                     334566777777777777788888888


Q ss_pred             hcC---CCCCChhHHHHHHHHHHccCCHHHHHHHHHHH--------------HhHHHHhhcCHHHHHHHHHHHH
Q psy14927        244 QSS---DWKSQPELLKSIISFYSKGKAPHLLANFYVSC--------------AQVEIDEFGNYEKGLGALNEAK  300 (1074)
Q Consensus       244 ~~~---~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~--------------a~~ei~e~~~y~~a~~~l~~a~  300 (1074)
                      --+   ....+.-...++.+||+..+.|++|.-||.++              |..- +.-||.++|...|...+
T Consensus       438 ~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~-~~~g~~EkalEtL~~~~  510 (895)
T KOG2076|consen  438 SPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLY-QQLGNHEKALETLEQII  510 (895)
T ss_pred             HHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHH-HhcCCHHHHHHHHhccc
Confidence            653   22223457778899999999999999999887              4455 67888888877766544

>PRK07395 L-aspartate oxidase; Provisional

Probab=97.21  E-value=0.0016  Score=79.52  Aligned_cols=44  Identities=20%  Similarity=0.181  Sum_probs=32.7

Q ss_pred             CCCeeeCCCCCCCCCCEEEecccCC-C--------CCcHHHHHHHHHHHHHHh
Q psy14927       1027 KGRVPVNSRFQTVIPNIFAIGDCIH-G--------PMLAHKAEDEGIVCVEGI 1070 (1074)
Q Consensus      1027 ~G~I~Vd~~~~ts~~~IyAiGD~~~-~--------~~~~~~A~~~G~~aA~~I 1070 (1074)
                      -|.|.||.+.+|++||+||+|+|+. +        ......++--|+.++.++
T Consensus       347 ~GGi~vd~~~~t~I~GLyAaGE~a~~G~hGanRL~gnsl~e~lvfG~~a~~~~  399 (553)
T PRK07395        347 MGGVVTDLNNQTSIPGLYAVGETASTGVHGANRLASNSLLECLVFAAQLAQLE  399 (553)
T ss_pred             CCCeeECCCCcccCCCEEECccccccCCCcccchHHHHHHHHHHHHHHHHHHH
Confidence            3778999999999999999999864 2        112345566677777776

>KOG1585|consensus

Probab=97.21  E-value=0.04  Score=57.57  Aligned_cols=167  Identities=20%  Similarity=0.208  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927         52 LLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus        52 l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                      +.+|=+.|.-..+.|+.|+-+|..|++|+..-.+|.+      |.+-.   .+..+.+|-|+.||               
T Consensus        20 ~~~wkad~dgaas~yekAAvafRnAk~feKakdcLlk------A~~~y---EnnrslfhAAKayE---------------   75 (308)
T KOG1585|consen   20 LTRWKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLK------ASKGY---ENNRSLFHAAKAYE---------------   75 (308)
T ss_pred             hhccCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHH------HHHHH---HhcccHHHHHHHHH---------------
Confidence            3346688888888999999999999999765554322      22211   12233455555554               


Q ss_pred             CChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHccCChhHHHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHH
Q psy14927        132 GSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLETIEPDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAM  211 (1074)
Q Consensus       132 ~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~~~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~  211 (1074)
                          +|.-|+++...+.+.+++.                    ++|..+|..+|.+.-|...+-+.             .
T Consensus        76 ----qaamLake~~klsEvvdl~--------------------eKAs~lY~E~GspdtAAmaleKA-------------a  118 (308)
T KOG1585|consen   76 ----QAAMLAKELSKLSEVVDLY--------------------EKASELYVECGSPDTAAMALEKA-------------A  118 (308)
T ss_pred             ----HHHHHHHHHHHhHHHHHHH--------------------HHHHHHHHHhCCcchHHHHHHHH-------------H
Confidence                3333444433333332222                    44555555555555554444431             1


Q ss_pred             HHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcCCC-CCChhHHHHHHHHHHccCCHHHHHHHHHHH--HhHHHHhhcC
Q psy14927        212 KCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDW-KSQPELLKSIISFYSKGKAPHLLANFYVSC--AQVEIDEFGN  288 (1074)
Q Consensus       212 k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~~~-~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~--a~~ei~e~~~  288 (1074)
                      | ++++-+.+++++         ||..+.+.++..+- +-.-+.+....+.|.+.+.|.+++.++-+-  +..+++.|+.
T Consensus       119 k-~lenv~Pd~Alq---------lYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~  188 (308)
T KOG1585|consen  119 K-ALENVKPDDALQ---------LYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNS  188 (308)
T ss_pred             H-HhhcCCHHHHHH---------HHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhccc
Confidence            1 223334444433         24455555544321 111244445566666777777777665443  4555566665


Q ss_pred             H
Q psy14927        289 Y  289 (1074)
Q Consensus       289 y  289 (1074)
                      -
T Consensus       189 ~  189 (308)
T KOG1585|consen  189 Q  189 (308)
T ss_pred             H
Confidence            4

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.18  E-value=0.00059  Score=80.12  Aligned_cols=90  Identities=10%  Similarity=0.035  Sum_probs=63.7

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEecC
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITGP  869 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id~  869 (1074)
                      +|+|||||+.|+.+|..+++     ++++..+......           ....+...+.+.+.+.||+++.+ .++.++.
T Consensus       146 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~-----------~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~  214 (396)
T PRK09754        146 SVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN-----------APPPVQRYLLQRHQQAGVRILLNNAIEHVVD  214 (396)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhh-----------cCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc
Confidence            49999999999999999987     4555444321110           01223334566677889999998 5666653


Q ss_pred             -CeEEEEeCCCCeeEEEcCeEEEccCCCCC
Q psy14927        870 -NTVTVIKSDGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       870 -~~~~v~~~~G~~~~i~~d~lIIATG~~p~  898 (1074)
                       +...+.+.+|  .++.+|.||+|+|.+|.
T Consensus       215 ~~~~~v~l~~g--~~i~aD~Vv~a~G~~pn  242 (396)
T PRK09754        215 GEKVELTLQSG--ETLQADVVIYGIGISAN  242 (396)
T ss_pred             CCEEEEEECCC--CEEECCEEEECCCCChh
Confidence             3456677787  57999999999999984

>PRK07588 hypothetical protein; Provisional

Probab=97.16  E-value=0.0019  Score=75.83  Aligned_cols=43  Identities=14%  Similarity=0.184  Sum_probs=35.2

Q ss_pred             CCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927        961 QGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus       961 ~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
                      .||++++++++++++.+++++.|++.+      ++++.+|.||-|.|..
T Consensus       115 ~~v~i~~~~~v~~i~~~~~~v~v~~~~------g~~~~~d~vIgADG~~  157 (391)
T PRK07588        115 GQVETIFDDSIATIDEHRDGVRVTFER------GTPRDFDLVIGADGLH  157 (391)
T ss_pred             cCeEEEeCCEEeEEEECCCeEEEEECC------CCEEEeCEEEECCCCC
Confidence            379999999999999877777777665      3567899999998864

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=97.14  E-value=0.00073  Score=77.62  Aligned_cols=99  Identities=18%  Similarity=0.235  Sum_probs=68.5

Q ss_pred             hhhhhhccccchHHHHHHHhh---hhhhh--ccccccccc----hhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eE
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT---KLFTQ--AGDKGVKLN----LETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HG  864 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~---~l~e~--~~~~g~~~~----~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v  864 (1074)
                      .+|+|+||||.|.+.|-+|+.   .++..  .+.....+.    .+.+.+.   +..++..+..+.|.+.||+++++ .|
T Consensus       156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~---~~~~l~~~a~~~L~~~GV~v~l~~~V  232 (405)
T COG1252         156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPM---FPPKLSKYAERALEKLGVEVLLGTPV  232 (405)
T ss_pred             eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccC---CCHHHHHHHHHHHHHCCCEEEcCCce
Confidence            349999999999999999998   22221  111111111    1222222   23566667888999999999999 58


Q ss_pred             EEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCC
Q psy14927        865 KITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTP  899 (1074)
Q Consensus       865 ~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~  899 (1074)
                      +.++++.+++  ++|+. ++.++.+|.|+|.++++
T Consensus       233 t~v~~~~v~~--~~g~~-~I~~~tvvWaaGv~a~~  264 (405)
T COG1252         233 TEVTPDGVTL--KDGEE-EIPADTVVWAAGVRASP  264 (405)
T ss_pred             EEECCCcEEE--ccCCe-eEecCEEEEcCCCcCCh
Confidence            8999987655  55522 69999999999999753

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=97.12  E-value=0.00079  Score=78.55  Aligned_cols=90  Identities=13%  Similarity=0.134  Sum_probs=63.9

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEecC
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITGP  869 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id~  869 (1074)
                      +|+|||||+.|+.+|..|++     ++++..+.....     .      ....+...+.+.+++.||+++.+ .++.++.
T Consensus       143 ~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~-----~------~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~  211 (377)
T PRK04965        143 RVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS-----L------MPPEVSSRLQHRLTEMGVHLLLKSQLQGLEK  211 (377)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch-----h------CCHHHHHHHHHHHHhCCCEEEECCeEEEEEc
Confidence            39999999999999999987     455544332111     0      01223344566778889999988 5776654


Q ss_pred             --CeEEEEeCCCCeeEEEcCeEEEccCCCCC
Q psy14927        870 --NTVTVIKSDGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       870 --~~~~v~~~~G~~~~i~~d~lIIATG~~p~  898 (1074)
                        ....+.+.+|  .++.+|.||+|+|..|.
T Consensus       212 ~~~~~~v~~~~g--~~i~~D~vI~a~G~~p~  240 (377)
T PRK04965        212 TDSGIRATLDSG--RSIEVDAVIAAAGLRPN  240 (377)
T ss_pred             cCCEEEEEEcCC--cEEECCEEEECcCCCcc
Confidence              3456677777  68999999999999884

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.10  E-value=0.0047  Score=67.04  Aligned_cols=122  Identities=20%  Similarity=0.186  Sum_probs=75.6

Q ss_pred             CHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccC--------cc
Q psy14927        947 DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLG--------LE 1018 (1074)
Q Consensus       947 ~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~--------l~ 1018 (1074)
                      +-...+.+...++..|.-++.+..|...+-.+++++-..+.   +.....+.+|..++|+|.--...+..        +-
T Consensus       257 GiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~tr---n~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf  333 (421)
T COG3075         257 GIRLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTR---NHADIPLRADFYVLASGSFFSKGLVAERDKIYEPIF  333 (421)
T ss_pred             hhhHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEec---ccccCCCChhHeeeeccccccccchhhhhhhhcchh
Confidence            34567778889999999999999999988776665433332   24456788999999998532111100        00


Q ss_pred             ccCcc-------cCCC----------CCeeeCCCCCCC-----CCCEEEecccCCCCCc------HHHHHHHHHHHHHHh
Q psy14927       1019 EIGIE-------KDEK----------GRVPVNSRFQTV-----IPNIFAIGDCIHGPML------AHKAEDEGIVCVEGI 1070 (1074)
Q Consensus      1019 ~~gl~-------ld~~----------G~I~Vd~~~~ts-----~~~IyAiGD~~~~~~~------~~~A~~~G~~aA~~I 1070 (1074)
                      .+.+.       +...          =.|.+|++++.+     +.|+|+||-+.++...      .-+|+..|..||..|
T Consensus       334 ~ldi~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi~egcGsGVaivta~~aa~qi  413 (421)
T COG3075         334 DLDILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPIAEGCGSGVAIVTALHAAEQI  413 (421)
T ss_pred             hcccccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHHHhcCCcchHHHHHHHHHHHH
Confidence            11111       1111          126778887753     5789999999886321      234556666666666


Q ss_pred             h
Q psy14927       1071 A 1071 (1074)
Q Consensus      1071 ~ 1071 (1074)
                      +
T Consensus       414 ~  414 (421)
T COG3075         414 A  414 (421)
T ss_pred             H
Confidence            5

>PRK09897 hypothetical protein; Provisional

Probab=97.10  E-value=0.0011  Score=79.77  Aligned_cols=30  Identities=17%  Similarity=0.251  Sum_probs=25.9

Q ss_pred             hhhhhccccchHHHHHHHhh-------hhhhhccccc
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-------KLFTQAGDKG  825 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g  825 (1074)
                      +|+||||||+|+.+|..|.+       ++||+....|
T Consensus         3 ~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G   39 (534)
T PRK09897          3 KIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAG   39 (534)
T ss_pred             eEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCC
Confidence            49999999999999999976       7888866555

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=97.10  E-value=0.0038  Score=71.71  Aligned_cols=58  Identities=19%  Similarity=0.359  Sum_probs=44.5

Q ss_pred             CHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEE-EEEeeccCCCCceEEEcCEEEEccCCccc
Q psy14927        947 DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNIT-VTIENVKDPTKKEELSCDALLVCVGRRPY 1011 (1074)
Q Consensus       947 ~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~-v~~~~~~~~g~~~~i~~D~vi~a~G~~p~ 1011 (1074)
                      +..+...+.+.+++.|++++.+++|+++..+++.+. |.+.+      +. +.+|.||+|+|....
T Consensus       146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~------g~-i~ad~vV~a~G~~s~  204 (358)
T PF01266_consen  146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSD------GE-IRADRVVLAAGAWSP  204 (358)
T ss_dssp             HHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETT------EE-EEECEEEE--GGGHH
T ss_pred             ccchhhhhHHHHHHhhhhccccccccchhhcccccccccccc------cc-cccceeEecccccce
Confidence            456778888888999999999999999998877765 66544      44 999999999997543

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK06126 hypothetical protein; Provisional

Probab=97.09  E-value=0.005  Score=75.60  Aligned_cols=59  Identities=20%  Similarity=0.402  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHh-CCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927        950 VAKQFQRILGK-QGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus       950 ~~~~~~~~l~~-~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
                      +...+.+.+.+ .||+++++++++++..+++++.+++.+.. +|+..++.+|.||.|.|..
T Consensus       128 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~~~-~g~~~~i~ad~vVgADG~~  187 (545)
T PRK06126        128 LEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLD-GGESLTIRADYLVGCDGAR  187 (545)
T ss_pred             HHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEECC-CCcEEEEEEEEEEecCCcc
Confidence            44455566554 58999999999999987777777776533 4555689999999998865

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.09  E-value=0.00052  Score=60.70  Aligned_cols=72  Identities=15%  Similarity=0.087  Sum_probs=49.9

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEecC
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITGP  869 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id~  869 (1074)
                      +|+|||||+.|+..|..+++     ++++..+.....+            ..++...+.+.+++.||+++++ .++.++.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~------------~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~   68 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGF------------DPDAAKILEEYLRKRGVEVHTNTKVKEIEK   68 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTS------------SHHHHHHHHHHHHHTTEEEEESEEEEEEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhc------------CHHHHHHHHHHHHHCCCEEEeCCEEEEEEE
Confidence            38899999999999999988     6666666543111            1333444677788889999999 4555543


Q ss_pred             --CeEEEEeCCC
Q psy14927        870 --NTVTVIKSDG  879 (1074)
Q Consensus       870 --~~~~v~~~~G  879 (1074)
                        ..++|+++||
T Consensus        69 ~~~~~~V~~~~g   80 (80)
T PF00070_consen   69 DGDGVEVTLEDG   80 (80)
T ss_dssp             ETTSEEEEEETS
T ss_pred             eCCEEEEEEecC
Confidence              2355666665

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>KOG2003|consensus

Probab=97.08  E-value=0.016  Score=64.66  Aligned_cols=174  Identities=21%  Similarity=0.201  Sum_probs=98.6

Q ss_pred             HhccCHHHHHHHHHHhhCh-hhhhhHh-------hccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhcCChHHHHHH
Q psy14927         61 ESTEDMDLAMKYYEEARDY-LSMVRVL-------CFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQFDEAIHF  127 (1074)
Q Consensus        61 e~~~~~~~A~~~y~~a~d~-~~~vr~l-------~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~g~~~~Ai~~  127 (1074)
                      ...|++++|+++|..|=+- -|.+..|       ..+|+.++|.+.--     --++.+..+++|.+|+...+-.+||++
T Consensus       501 f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~  580 (840)
T KOG2003|consen  501 FANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIEL  580 (840)
T ss_pred             eecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence            3456666666665543221 1333322       23445555544322     235677889999999999999999998


Q ss_pred             HHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHcc-CChhHHHHHHHHhCChHHHHHHHHhhccCCcchHH
Q psy14927        128 YSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLET-IEPDKAVLLYHKAGALHKALDLAFKLTLSNSGLVF  206 (1074)
Q Consensus       128 y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~-~~~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~  206 (1074)
                      |..+...                   .+ ..|..+-+.|+.|.+ |+-.+|-+.|...=+|       |           
T Consensus       581 ~~q~~sl-------------------ip-~dp~ilskl~dlydqegdksqafq~~ydsyry-------f-----------  622 (840)
T KOG2003|consen  581 LMQANSL-------------------IP-NDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-------F-----------  622 (840)
T ss_pred             HHHhccc-------------------CC-CCHHHHHHHHHHhhcccchhhhhhhhhhcccc-------c-----------
Confidence            8765432                   12 233444456665554 4444444333321111       1           


Q ss_pred             HHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcCCCCCChhHHH---HHHHHHHccCCHHHHHHHHHHHHhHHH
Q psy14927        207 QIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPELLK---SIISFYSKGKAPHLLANFYVSCAQVEI  283 (1074)
Q Consensus       207 ~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~~~~~~~~~~~---~i~~~Y~k~~~~~~aa~~~~~~a~~ei  283 (1074)
                                ..+++-+.-++......+.+..+++|++.. .-..|...+   .|..|                     .
T Consensus       623 ----------p~nie~iewl~ayyidtqf~ekai~y~eka-aliqp~~~kwqlmiasc---------------------~  670 (840)
T KOG2003|consen  623 ----------PCNIETIEWLAAYYIDTQFSEKAINYFEKA-ALIQPNQSKWQLMIASC---------------------F  670 (840)
T ss_pred             ----------CcchHHHHHHHHHHHhhHHHHHHHHHHHHH-HhcCccHHHHHHHHHHH---------------------H
Confidence                      234555666666777778888899998874 112222222   22333                     3


Q ss_pred             HhhcCHHHHHHHHHHHHHHHH
Q psy14927        284 DEFGNYEKGLGALNEAKRCLL  304 (1074)
Q Consensus       284 ~e~~~y~~a~~~l~~a~~~l~  304 (1074)
                      ..-|||.+|.+.+....+.+.
T Consensus       671 rrsgnyqka~d~yk~~hrkfp  691 (840)
T KOG2003|consen  671 RRSGNYQKAFDLYKDIHRKFP  691 (840)
T ss_pred             HhcccHHHHHHHHHHHHHhCc
Confidence            566888888888887776554

>KOG1586|consensus

Probab=97.06  E-value=0.015  Score=60.24  Aligned_cols=107  Identities=16%  Similarity=0.222  Sum_probs=73.9

Q ss_pred             HHHHHHHHhcCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHhHHHHhhcCHHHHHHHHHHHHHHHHhcCCCchHHHH
Q psy14927        236 YVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLK  315 (1074)
Q Consensus       236 ~~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~  315 (1074)
                      |+-|++-....++..-.+-+.+.++.||..|+|..+|+++..+|..-=.+..|+++|.+.+..|-..+........   .
T Consensus        77 YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ss---A  153 (288)
T KOG1586|consen   77 YVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSS---A  153 (288)
T ss_pred             HHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhh---H
Confidence            4455555555444444455566789999999999999999999987536779999999999999888875332111   0


Q ss_pred             HHHHHHHHHHHHhhcCChHHHhhHHHHHHHH
Q psy14927        316 SSVVEKLAEVEIDEFGNYEKGLGALNEAKRC  346 (1074)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  346 (1074)
                      +.-+ +.+--|-.+.++|.+||+.|..++.+
T Consensus       154 NKC~-lKvA~yaa~leqY~~Ai~iyeqva~~  183 (288)
T KOG1586|consen  154 NKCL-LKVAQYAAQLEQYSKAIDIYEQVARS  183 (288)
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111 12223334459999999999999886

>KOG0276|consensus

Probab=97.06  E-value=0.0088  Score=69.33  Aligned_cols=146  Identities=15%  Similarity=0.113  Sum_probs=117.8

Q ss_pred             cHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHH
Q psy14927         36 NTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQY  115 (1074)
Q Consensus        36 ~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~  115 (1074)
                      +++.+...++... +..+...|.++|++|-.++|++   -+.|-+.--.+...+|+.+.|.+++.+..+..-...|++.+
T Consensus       601 d~~~a~~vLp~I~-k~~rt~va~Fle~~g~~e~AL~---~s~D~d~rFelal~lgrl~iA~~la~e~~s~~Kw~~Lg~~a  676 (794)
T KOG0276|consen  601 DLEVADGVLPTIP-KEIRTKVAHFLESQGMKEQALE---LSTDPDQRFELALKLGRLDIAFDLAVEANSEVKWRQLGDAA  676 (794)
T ss_pred             cccccccccccCc-hhhhhhHHhHhhhccchHhhhh---cCCChhhhhhhhhhcCcHHHHHHHHHhhcchHHHHHHHHHH
Confidence            4445555555555 6678889999999999999985   47787777888999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHcc-CChhHHHHHHHHhCChHHHHHHH
Q psy14927        116 ENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLET-IEPDKAVLLYHKAGALHKALDLA  194 (1074)
Q Consensus       116 ~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~-~~~~~A~~ly~kaG~~~kAl~l~  194 (1074)
                      .+.|++.-|.+.|.+++.|..-+-|.-..|..            +.+..+|.-=++ +..--|-..|.+.|+++.+++++
T Consensus       677 l~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~------------~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lL  744 (794)
T KOG0276|consen  677 LSAGELPLASECFLRARDLGSLLLLYTSSGNA------------EGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELL  744 (794)
T ss_pred             hhcccchhHHHHHHhhcchhhhhhhhhhcCCh------------hHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999776554444333            333344444444 56677999999999999999999


Q ss_pred             Hhh
Q psy14927        195 FKL  197 (1074)
Q Consensus       195 ~~~  197 (1074)
                      .+.
T Consensus       745 i~t  747 (794)
T KOG0276|consen  745 IST  747 (794)
T ss_pred             Hhc
Confidence            883

>KOG2066|consensus

Probab=97.06  E-value=0.07  Score=64.20  Aligned_cols=245  Identities=17%  Similarity=0.230  Sum_probs=157.2

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccc-----hhhhHhhh------cHHHHHHHhhc--CCChHHHHHHHHHHHhccC------
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQ-----HVPRMLLE------NTDKLEKYIIQ--SKDPVLLKWWAQYIESTED------   65 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~-----~~~~~~~~------~~~~~~~~~~~--~~~~~l~~~~a~~~e~~~~------   65 (1074)
                      -|.+.++|+||..+=+...-...     ++.++|++      ..+.+..+.++  ++....|.||-.....-++      
T Consensus       365 Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~  444 (846)
T KOG2066|consen  365 WLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAP  444 (846)
T ss_pred             HHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhc
Confidence            36788899999999888765432     45677753      56677777776  4677788887555544333      


Q ss_pred             -------------HHHHHHHHHHhhChhhhhhHhhccCCHHHH-----------HHHHHhcCChHHHHHHHHHHHhcCCh
Q psy14927         66 -------------MDLAMKYYEEARDYLSMVRVLCFLQDFSRA-----------AELANASGDTAAAYHLARQYENSGQF  121 (1074)
Q Consensus        66 -------------~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a-----------~~i~~~~~~~~~~~~la~~~~~~g~~  121 (1074)
                                   |+..+-.|.. -|+...-.+ . ..|+...           -++.+.+.+......||..|...|+|
T Consensus       445 ~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~-i-~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y  521 (846)
T KOG2066|consen  445 YLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLEL-I-KEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKY  521 (846)
T ss_pred             cCCCCCcccCchHHHHHHHHHHH-HHHHHHHHH-H-HhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccCh
Confidence                         3344444444 222111110 0 1111111           12223345666777899999999999


Q ss_pred             HHHHHHHHHhCChHHHHHHHHHhCchHHHHHHh---------------h----hcC-----------ch-hHHHHHHHHc
Q psy14927        122 DEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLA---------------L----SAG-----------PS-EQIEAATYLE  170 (1074)
Q Consensus       122 ~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~---------------~----~~~-----------~~-~~~~~A~~~e  170 (1074)
                      +.|++.|.++++. ++|++-++|++.+.+....               .    ..+           |. .+.-.+.++.
T Consensus       522 ~~Al~~ylklk~~-~vf~lI~k~nL~d~i~~~Iv~Lmll~skka~~lLldn~d~ip~a~Vveql~~~P~~l~~YL~kl~~  600 (846)
T KOG2066|consen  522 EKALPIYLKLQDK-DVFDLIKKHNLFDQIKDQIVLLMLLDSKKAIDLLLDNRDSISPSEVVEQLEDNPKLLYCYLHKLFK  600 (846)
T ss_pred             HHHHHHHHhccCh-HHHHHHHHHhhHHHHHHHHHHHHccchhhHHHHHhhccccCCHHHHHHHHhcChHHHHHHHHHHhh
Confidence            9999999999886 5999999999888774421               0    011           11 1111333333


Q ss_pred             cC-----Ch-hHHHHHHHH--------------hCChHHHHHHHHhhccCCcchHH------HHHHHHHHhc-CCChhhH
Q psy14927        171 TI-----EP-DKAVLLYHK--------------AGALHKALDLAFKLTLSNSGLVF------QIKAMKCLLK-SGDTNKI  223 (1074)
Q Consensus       171 ~~-----~~-~~A~~ly~k--------------aG~~~kAl~l~~~~~~~~~~~~~------~~~a~k~l~~-~~~~~~~  223 (1074)
                      ..     .| ++.+.+|..              .=+.++|+++|.+.++.+.-+|-      .-.|.+..+. .+|.++|
T Consensus       601 rd~~~~~~y~dk~I~LYAEyDrk~LLPFLr~s~~Y~lekA~eiC~q~~~~~E~VYlLgrmGn~k~AL~lII~el~die~A  680 (846)
T KOG2066|consen  601 RDHFMGSEYHDKQIELYAEYDRKKLLPFLRKSQNYNLEKALEICSQKNFYEELVYLLGRMGNAKEALKLIINELRDIEKA  680 (846)
T ss_pred             cCccccchhhhHHHHHHHHHhHhhhhHHHHhcCCCCHHHHHHHHHhhCcHHHHHHHHHhhcchHHHHHHHHHHhhCHHHH
Confidence            22     23 789999875              45678999999986543221111      2466776654 8999999


Q ss_pred             HHhhhhcchHHHHHHHHHHHhcCCCCCChhHHHHH
Q psy14927        224 IFFAGVSRMKEIYVMAANYLQSSDWKSQPELLKSI  258 (1074)
Q Consensus       224 i~~a~~~r~~~l~~~aa~yl~~~~~~~~~~~~~~i  258 (1074)
                      |+|++...+++||.-+++|-..-     |+.++.+
T Consensus       681 IefvKeq~D~eLWe~LI~~~ldk-----Pe~~~~l  710 (846)
T KOG2066|consen  681 IEFVKEQDDSELWEDLINYSLDK-----PEFIKAL  710 (846)
T ss_pred             HHHHHhcCCHHHHHHHHHHhhcC-----cHHHHHH
Confidence            99999999999999999998655     6666665

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=97.06  E-value=0.0012  Score=78.28  Aligned_cols=102  Identities=15%  Similarity=0.166  Sum_probs=62.2

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhcccccc------ccc---hhhhhhhh------h---------------
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGV------KLN---LETMMGTK------S---------------  838 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~------~~~---~~~~~~~~------~---------------  838 (1074)
                      +.+|+||||||||++||+.|++     .++|+.+.++.      .+.   +..+.+..      .               
T Consensus         5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (428)
T PRK10157          5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKS   84 (428)
T ss_pred             cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCC
Confidence            3459999999999999999999     67877654331      110   11110000      0               


Q ss_pred             ----H----------------HHhhhhhhHHHHhhhCCeEEEee-eEEEec--CCeEEEEeCCCCeeEEEcCeEEEccCC
Q psy14927        839 ----A----------------AVKALTGGIAHLFKSNKVTQLNG-HGKITG--PNTVTVIKSDGSTEEVKTKNILIATGS  895 (1074)
Q Consensus       839 ----~----------------~~~~l~~~~~~~l~~~gV~~~~g-~v~~id--~~~~~v~~~~G~~~~i~~d~lIIATG~  895 (1074)
                          .                ....+...+.+.+.+.|++++.+ +|+.+.  .+.+.+...+|  .++.+|.||+|+|.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g--~~i~A~~VI~A~G~  162 (428)
T PRK10157         85 AMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADG--DVIEAKTVILADGV  162 (428)
T ss_pred             ceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCC--cEEECCEEEEEeCC
Confidence                0                00111122445556689999999 566653  33343334455  47999999999998


Q ss_pred             CC
Q psy14927        896 EV  897 (1074)
Q Consensus       896 ~p  897 (1074)
                      ..
T Consensus       163 ~s  164 (428)
T PRK10157        163 NS  164 (428)
T ss_pred             CH
Confidence            64

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.05  E-value=0.0045  Score=73.20  Aligned_cols=57  Identities=21%  Similarity=0.299  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHh-CCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927        950 VAKQFQRILGK-QGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus       950 ~~~~~~~~l~~-~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
                      +.+.+.+.+.+ .||++++++++++++.+++++.|++.+   ++.+.++.+|.||.|.|..
T Consensus       123 l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~---~~~~~~i~adlvIgADG~~  180 (415)
T PRK07364        123 LLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEI---EGKQQTLQSKLVVAADGAR  180 (415)
T ss_pred             HHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEcc---CCcceEEeeeEEEEeCCCC
Confidence            34555566655 479999999999998877777777764   2334679999999999854

>KOG0276|consensus

Probab=97.03  E-value=0.0042  Score=71.92  Aligned_cols=110  Identities=18%  Similarity=0.180  Sum_probs=92.2

Q ss_pred             hhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHH-
Q psy14927         34 LENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLA-  112 (1074)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la-  112 (1074)
                      +++.+.+.++..+.+++.=|+++|+++.+.+++..|.+||.+|.||-++.-++...|+-+....++..+...+ -+.+| 
T Consensus       650 lgrl~iA~~la~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g-~~N~AF  728 (794)
T KOG0276|consen  650 LGRLDIAFDLAVEANSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQG-KNNLAF  728 (794)
T ss_pred             cCcHHHHHHHHHhhcchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhc-ccchHH
Confidence            3577888888888999999999999999999999999999999999999999999999887777766443222 22233 


Q ss_pred             HHHHhcCChHHHHHHHHHhCChHHHHHHHHHh
Q psy14927        113 RQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQ  144 (1074)
Q Consensus       113 ~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~  144 (1074)
                      --|...|++++.+++++..+++.||-=+|+.+
T Consensus       729 ~~~~l~g~~~~C~~lLi~t~r~peAal~ArtY  760 (794)
T KOG0276|consen  729 LAYFLSGDYEECLELLISTQRLPEAALFARTY  760 (794)
T ss_pred             HHHHHcCCHHHHHHHHHhcCcCcHHHHHHhhh
Confidence            33557899999999999999999999999888

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=97.02  E-value=0.00099  Score=77.33  Aligned_cols=95  Identities=18%  Similarity=0.196  Sum_probs=62.9

Q ss_pred             hhhhhccccchHHHHHHHhhhhhhhcc-cccccc-chhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEecCCeE
Q psy14927        796 VVLNTLGNCAAVQANYHLATKLFTQAG-DKGVKL-NLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITGPNTV  872 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~~l~e~~~-~~g~~~-~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id~~~~  872 (1074)
                      +|+|||||++|+..|..|++ .+.... .....+ ....+.+.   ....+...+.+.+++.||+++.+ .++.++.+  
T Consensus       147 ~vvVvG~G~~g~E~A~~l~~-~~~~~g~~~~V~li~~~~~l~~---~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~--  220 (364)
T TIGR03169       147 RLAVVGGGAAGVEIALALRR-RLPKRGLRGQVTLIAGASLLPG---FPAKVRRLVLRLLARRGIEVHEGAPVTRGPDG--  220 (364)
T ss_pred             eEEEECCCHHHHHHHHHHHH-HHHhcCCCceEEEEeCCccccc---CCHHHHHHHHHHHHHCCCEEEeCCeeEEEcCC--
Confidence            48999999999999999986 222111 000011 11111111   11334445677888899999999 57777765  


Q ss_pred             EEEeCCCCeeEEEcCeEEEccCCCCC
Q psy14927        873 TVIKSDGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       873 ~v~~~~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      .+.+.+|  .++.+|.||+|+|..|.
T Consensus       221 ~v~~~~g--~~i~~D~vi~a~G~~p~  244 (364)
T TIGR03169       221 ALILADG--RTLPADAILWATGARAP  244 (364)
T ss_pred             eEEeCCC--CEEecCEEEEccCCChh
Confidence            4566777  68999999999999874

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK06475 salicylate hydroxylase; Provisional

Probab=97.02  E-value=0.0038  Score=73.46  Aligned_cols=57  Identities=26%  Similarity=0.450  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHh-CCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927        950 VAKQFQRILGK-QGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus       950 ~~~~~~~~l~~-~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
                      +.+.+.+.+.+ .||+++++++++.+..+++++.+++.+   .+.++++.+|+||-|-|..
T Consensus       109 l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~---~~~~~~~~adlvIgADG~~  166 (400)
T PRK06475        109 LQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIR---TNSVETVSAAYLIACDGVW  166 (400)
T ss_pred             HHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEe---CCCCcEEecCEEEECCCcc
Confidence            44555566654 489999999999998877777777765   2224578999999998854

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=97.00  E-value=0.0055  Score=71.93  Aligned_cols=57  Identities=21%  Similarity=0.412  Sum_probs=44.9

Q ss_pred             CHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcc
Q psy14927        947 DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRP 1010 (1074)
Q Consensus       947 ~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p 1010 (1074)
                      ++.+...+.+.+++.|++++.++.|..+...++++.|.+.+      + ++.+|.||+|+|...
T Consensus       148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~------g-~i~ad~vV~A~G~~s  204 (393)
T PRK11728        148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQ------G-EYEARTLINCAGLMS  204 (393)
T ss_pred             HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECC------C-EEEeCEEEECCCcch
Confidence            35677778888899999999999999998766655554332      2 699999999999764

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=97.00  E-value=0.0021  Score=64.79  Aligned_cols=37  Identities=19%  Similarity=0.383  Sum_probs=29.0

Q ss_pred             eEEEeeeEEEecC--CeEEEEeCCCCeeEEEcCeEEEccCC
Q psy14927        857 VTQLNGHGKITGP--NTVTVIKSDGSTEEVKTKNILIATGS  895 (1074)
Q Consensus       857 V~~~~g~v~~id~--~~~~v~~~~G~~~~i~~d~lIIATG~  895 (1074)
                      |+++..+|+.++.  +...+++.+|  ..+.+|.||+|||-
T Consensus       117 v~~~~~~V~~i~~~~~~~~v~~~~g--~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  117 VRHVRAEVVDIRRDDDGYRVVTADG--QSIRADAVVLATGH  155 (156)
T ss_pred             EEEEeeEEEEEEEcCCcEEEEECCC--CEEEeCEEEECCCC
Confidence            5566667887763  4567788888  68999999999994

>PRK08244 hypothetical protein; Provisional

Probab=96.98  E-value=0.0047  Score=74.84  Aligned_cols=58  Identities=16%  Similarity=0.250  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcc
Q psy14927        950 VAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRP 1010 (1074)
Q Consensus       950 ~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p 1010 (1074)
                      +.+.+.+.+++.||+++.+++++++..+++++.+++.+.+  | ..++.+|.||.|.|..+
T Consensus       102 le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~--g-~~~i~a~~vVgADG~~S  159 (493)
T PRK08244        102 TEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPD--G-LRTLTSSYVVGADGAGS  159 (493)
T ss_pred             HHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCC--c-cEEEEeCEEEECCCCCh
Confidence            4556667778889999999999999887777777776521  3 35799999999999764

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=96.96  E-value=0.0017  Score=76.13  Aligned_cols=48  Identities=15%  Similarity=0.246  Sum_probs=35.1

Q ss_pred             HHHHhhhCC-eEEEeeeEEEec--CCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        848 IAHLFKSNK-VTQLNGHGKITG--PNTVTVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       848 ~~~~l~~~g-V~~~~g~v~~id--~~~~~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                      +.+.+.+.| |+++..+++.+.  .+.+.|++.+|  .++.+|.||.|+|...
T Consensus       117 L~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g--~~~~a~~vI~adG~~S  167 (388)
T PRK07608        117 LWAALRFQPNLTWFPARAQGLEVDPDAATLTLADG--QVLRADLVVGADGAHS  167 (388)
T ss_pred             HHHHHHhCCCcEEEcceeEEEEecCCeEEEEECCC--CEEEeeEEEEeCCCCc
Confidence            445556666 988833666653  45677777777  5799999999999864

>TIGR02028 ChlP geranylgeranyl reductase

Probab=96.95  E-value=0.001  Score=78.10  Aligned_cols=50  Identities=18%  Similarity=0.201  Sum_probs=33.5

Q ss_pred             HHHHhhhCCeEEEeeeEEEec-----CCeEEEEe--CC-----CCeeEEEcCeEEEccCCCC
Q psy14927        848 IAHLFKSNKVTQLNGHGKITG-----PNTVTVIK--SD-----GSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       848 ~~~~l~~~gV~~~~g~v~~id-----~~~~~v~~--~~-----G~~~~i~~d~lIIATG~~p  897 (1074)
                      +.+.+.+.|++++.++++.+.     .....|+.  .+     |+..+++++.||.|+|..+
T Consensus        99 L~~~a~~~G~~v~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S  160 (398)
T TIGR02028        99 LRRRAADAGATLINGLVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS  160 (398)
T ss_pred             HHHHHHHCCcEEEcceEEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch
Confidence            445566779999999776552     12233332  22     4345799999999999876

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=96.92  E-value=0.0014  Score=76.69  Aligned_cols=102  Identities=15%  Similarity=0.110  Sum_probs=60.7

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhc-cc---cccccchh---------hhh------------hh-------h-
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQA-GD---KGVKLNLE---------TMM------------GT-------K-  837 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~-~~---~g~~~~~~---------~~~------------~~-------~-  837 (1074)
                      +|+||||||||+++|+.|++     +++|+. +.   .++.+...         .+.            ..       . 
T Consensus         2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (388)
T TIGR02023         2 DVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIPS   81 (388)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccCC
Confidence            49999999999999999999     577765 21   11111000         000            00       0 


Q ss_pred             -hHH-----HhhhhhhHHHHhhhCCeEEEeeeEEEec--CCeEEEEeCC------CCeeEEEcCeEEEccCCCC
Q psy14927        838 -SAA-----VKALTGGIAHLFKSNKVTQLNGHGKITG--PNTVTVIKSD------GSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       838 -~~~-----~~~l~~~~~~~l~~~gV~~~~g~v~~id--~~~~~v~~~~------G~~~~i~~d~lIIATG~~p  897 (1074)
                       ...     ...+...+.+.+.+.|++++.++++.+.  .+.+.+++.+      |+..++.+|.||.|+|...
T Consensus        82 ~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S  155 (388)
T TIGR02023        82 EDGYVGMVRREVFDSYLRERAQKAGAELIHGLFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANS  155 (388)
T ss_pred             CCCceEeeeHHHHHHHHHHHHHhCCCEEEeeEEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCc
Confidence             000     0111223445556679999888776654  3445555442      2235799999999999864

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=96.91  E-value=0.0042  Score=72.92  Aligned_cols=57  Identities=12%  Similarity=0.255  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCccc
Q psy14927        949 EVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPY 1011 (1074)
Q Consensus       949 ~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~ 1011 (1074)
                      .+.+.+.+.+++.||+++.++.++++..+++++.+++.+      +.++.+|.||.|.|..+.
T Consensus       114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~------g~~~~a~~vV~AdG~~S~  170 (392)
T PRK08773        114 LLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDD------GRRLEAALAIAADGAAST  170 (392)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECC------CCEEEeCEEEEecCCCch
Confidence            455666777888899999999999998877777676544      347999999999998653

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=96.91  E-value=0.0035  Score=73.92  Aligned_cols=54  Identities=15%  Similarity=0.277  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927        950 VAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus       950 ~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
                      +.+.+.+.+.+.||+++.++++.+++.+++++.|++.+      +.++.+|.||.|.|..
T Consensus       114 l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~------g~~~~a~~vVgAdG~~  167 (405)
T PRK05714        114 VQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLAD------GRQLRAPLVVAADGAN  167 (405)
T ss_pred             HHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECC------CCEEEeCEEEEecCCC
Confidence            44556677777899999999999998877777776654      3579999999999864

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=96.90  E-value=0.0018  Score=76.00  Aligned_cols=103  Identities=18%  Similarity=0.130  Sum_probs=63.2

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccc---------hhhhhhhhhH--------------------
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLN---------LETMMGTKSA--------------------  839 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~---------~~~~~~~~~~--------------------  839 (1074)
                      +.+|+||||||||++||+.|++     .++|+....|....         +..+.+....                    
T Consensus         3 ~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~   82 (396)
T COG0644           3 EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAI   82 (396)
T ss_pred             eeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEE
Confidence            3459999999999999999999     67787655443210         0000000000                    


Q ss_pred             ----------HHhhhhhhHHHHhhhCCeEEEeee-EEEec--CCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        840 ----------AVKALTGGIAHLFKSNKVTQLNGH-GKITG--PNTVTVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       840 ----------~~~~l~~~~~~~l~~~gV~~~~g~-v~~id--~~~~~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                                ....+-.++.....+.|++++.++ ++.+.  .+...+.+..|+ .++++++||.|+|+..
T Consensus        83 ~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~a~~vI~AdG~~s  152 (396)
T COG0644          83 EVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGD-DEVRAKVVIDADGVNS  152 (396)
T ss_pred             ecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCC-EEEEcCEEEECCCcch
Confidence                      001122235666777899999983 44443  333333333332 6899999999999875

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=96.90  E-value=0.002  Score=77.75  Aligned_cols=48  Identities=19%  Similarity=0.366  Sum_probs=33.7

Q ss_pred             HHHHhhhC-CeEEEeeeEEEec--CCeE-EEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        848 IAHLFKSN-KVTQLNGHGKITG--PNTV-TVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       848 ~~~~l~~~-gV~~~~g~v~~id--~~~~-~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                      +.+.+.+. |++++.++|+.+.  .+.+ .|.+.+|  ..+.++.||+|||...
T Consensus       106 L~e~L~~~~nV~I~q~~V~~Li~e~grV~GV~t~dG--~~I~Ak~VIlATGTFL  157 (618)
T PRK05192        106 MREILENQPNLDLFQGEVEDLIVENGRVVGVVTQDG--LEFRAKAVVLTTGTFL  157 (618)
T ss_pred             HHHHHHcCCCcEEEEeEEEEEEecCCEEEEEEECCC--CEEECCEEEEeeCcch
Confidence            33444444 8999888877653  3333 3667777  6899999999999753

>PRK07190 hypothetical protein; Provisional

Probab=96.88  E-value=0.009  Score=71.94  Aligned_cols=54  Identities=22%  Similarity=0.253  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927        950 VAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus       950 ~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
                      +...+.+.+.+.||+++.+++++.+..+++++.+.+.+      +.++.++.||.|.|..
T Consensus       111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~------g~~v~a~~vVgADG~~  164 (487)
T PRK07190        111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSN------GERIQSRYVIGADGSR  164 (487)
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECC------CcEEEeCEEEECCCCC
Confidence            44556677788899999999999998877776665543      3479999999998864

>TIGR00292 thiazole biosynthesis enzyme

Probab=96.88  E-value=0.0012  Score=72.10  Aligned_cols=101  Identities=16%  Similarity=0.121  Sum_probs=60.9

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhccccccccc-----hhh---------hhhhh--------h----HHHhhh
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLN-----LET---------MMGTK--------S----AAVKAL  844 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~-----~~~---------~~~~~--------~----~~~~~l  844 (1074)
                      +|+||||||+|+.||+.+++     .++|+....|+...     ++.         +....        .    .....+
T Consensus        23 DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~el  102 (254)
T TIGR00292        23 DVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSAEF  102 (254)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHHHH
Confidence            49999999999999999998     78888776653221     100         00000        0    001123


Q ss_pred             hhhHHHHhhhCCeEEEee-eEEEec--CC--eE-EEEeC------CC---CeeEEEcCeEEEccCCC
Q psy14927        845 TGGIAHLFKSNKVTQLNG-HGKITG--PN--TV-TVIKS------DG---STEEVKTKNILIATGSE  896 (1074)
Q Consensus       845 ~~~~~~~l~~~gV~~~~g-~v~~id--~~--~~-~v~~~------~G---~~~~i~~d~lIIATG~~  896 (1074)
                      ...+.....+.||+++.+ .++.+.  ++  .+ -|.+.      .|   +..++.++.||.|||..
T Consensus       103 ~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~  169 (254)
T TIGR00292       103 ISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHD  169 (254)
T ss_pred             HHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCC
Confidence            334555667789999988 455543  22  11 22222      11   23579999999999965

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>KOG2376|consensus

Probab=96.87  E-value=0.46  Score=55.81  Aligned_cols=314  Identities=17%  Similarity=0.199  Sum_probs=180.2

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchh-------hhHhh--hcHHHHHHHhhc--CCChHHHHHHHHHHHhccCHHHHHHHHH
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHV-------PRMLL--ENTDKLEKYIIQ--SKDPVLLKWWAQYIESTEDMDLAMKYYE   74 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~-------~~~~~--~~~~~~~~~~~~--~~~~~l~~~~a~~~e~~~~~~~A~~~y~   74 (1074)
                      |-+.++|++|..+-++-+-++ ..       +...+  +..+.+-..+..  ..++.++.-.||++...++|++|...|.
T Consensus        56 lIq~~ky~~ALk~ikk~~~~~-~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~  134 (652)
T KOG2376|consen   56 LIQLDKYEDALKLIKKNGALL-VINSFFFEKAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQ  134 (652)
T ss_pred             hhhhhHHHHHHHHHHhcchhh-hcchhhHHHHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            456789999997766665322 22       12222  233333333332  3567799999999999999999999999


Q ss_pred             Hh-----hChhhhhhH-hhccCCHHHH--HHHHH--hcCChHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHh
Q psy14927         75 EA-----RDYLSMVRV-LCFLQDFSRA--AELAN--ASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQ  144 (1074)
Q Consensus        75 ~a-----~d~~~~vr~-l~~~~~~~~a--~~i~~--~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~  144 (1074)
                      ..     .|++.-+|. |..-+--..+  .+.+.  ...+-+.+|..|-.+...|+|.+|++.+.+      |.++|++.
T Consensus       135 ~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~k------A~~~~~e~  208 (652)
T KOG2376|consen  135 HLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEK------ALRICREK  208 (652)
T ss_pred             HHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHH------HHHHHHHh
Confidence            86     566666666 3332222122  22222  134667899999999999999999999765      56788776


Q ss_pred             CchHHHHHHhhhcCchhHHHHHHHHcc-CCh--hHHHHHHHHhCChHHHHHHHHhh----------------cc------
Q psy14927        145 ALDDQLWNLALSAGPSEQIEAATYLET-IEP--DKAVLLYHKAGALHKALDLAFKL----------------TL------  199 (1074)
Q Consensus       145 ~~~~~~~~l~~~~~~~~~~~~A~~~e~-~~~--~~A~~ly~kaG~~~kAl~l~~~~----------------~~------  199 (1074)
                              |..+...++      ..++ -+.  .+=.-.++..|+-.+|..++...                .+      
T Consensus       209 --------l~~~d~~eE------eie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d  274 (652)
T KOG2376|consen  209 --------LEDEDTNEE------EIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKD  274 (652)
T ss_pred             --------hcccccchh------hHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccc
Confidence                    111111111      0111 111  11112234445555555433321                10      


Q ss_pred             ---CCcc-------hH-----H-------------------------HH-HHHHHHhc-CCCh-hh---HHHhhhhcchH
Q psy14927        200 ---SNSG-------LV-----F-------------------------QI-KAMKCLLK-SGDT-NK---IIFFAGVSRMK  233 (1074)
Q Consensus       200 ---~~~~-------~~-----~-------------------------~~-~a~k~l~~-~~~~-~~---~i~~a~~~r~~  233 (1074)
                         +|+.       .+     +                         +. .+.+.+.+ .++. +.   +...+....+.
T Consensus       275 ~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~  354 (652)
T KOG2376|consen  275 QNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVRE  354 (652)
T ss_pred             cccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHH
Confidence               1100       00     0                         00 11111111 1222 22   22223333344


Q ss_pred             HHHHHHHHHHhcCCCCCChhH---HH-HHHHHHHccCCHHHHHHHHH--------HH-------------HhHHHHhhcC
Q psy14927        234 EIYVMAANYLQSSDWKSQPEL---LK-SIISFYSKGKAPHLLANFYV--------SC-------------AQVEIDEFGN  288 (1074)
Q Consensus       234 ~l~~~aa~yl~~~~~~~~~~~---~~-~i~~~Y~k~~~~~~aa~~~~--------~~-------------a~~ei~e~~~  288 (1074)
                      ..+..+..+|+.. .+++|..   .. -.+++-...|.++.|...+.        .+             ..+- .--++
T Consensus       355 ~~~~ka~e~L~~~-~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~-~~~~~  432 (652)
T KOG2376|consen  355 KKHKKAIELLLQF-ADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALY-YKIKD  432 (652)
T ss_pred             HHHhhhHHHHHHH-hccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHH-HhccC
Confidence            4788899999886 4555544   22 23788888999998887766        11             1111 22344


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhcCChHHHhhHHHHHHH
Q psy14927        289 YEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGNYEKGLGALNEAKR  345 (1074)
Q Consensus       289 y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  345 (1074)
                      =..|-+.|.+|++.++++....  .+...+|-.++-+..+ .|.-..|++.|.+..+
T Consensus       433 ~~~a~~vl~~Ai~~~~~~~t~s--~~l~~~~~~aa~f~lr-~G~~~ea~s~leel~k  486 (652)
T KOG2376|consen  433 NDSASAVLDSAIKWWRKQQTGS--IALLSLMREAAEFKLR-HGNEEEASSLLEELVK  486 (652)
T ss_pred             CccHHHHHHHHHHHHHHhcccc--hHHHhHHHHHhHHHHh-cCchHHHHHHHHHHHH
Confidence            4558899999999999987655  4566677677777667 6999999998887554

>PRK12370 invasion protein regulator; Provisional

Probab=96.87  E-value=0.077  Score=65.23  Aligned_cols=70  Identities=13%  Similarity=0.063  Sum_probs=49.8

Q ss_pred             hccCHHHHHHHHHHhhCh--------hhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhcCChHHHHHHH
Q psy14927         62 STEDMDLAMKYYEEARDY--------LSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQFDEAIHFY  128 (1074)
Q Consensus        62 ~~~~~~~A~~~y~~a~d~--------~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~g~~~~Ai~~y  128 (1074)
                      ..+++++|..+|.++=..        ..+..++...|++++|....+     .+++..+.+.+|..+...|++++|++.|
T Consensus       316 ~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~  395 (553)
T PRK12370        316 KQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTI  395 (553)
T ss_pred             cchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            345578888888775543        123445667888888877765     3566777888899988889988888876


Q ss_pred             HHh
Q psy14927        129 SVA  131 (1074)
Q Consensus       129 ~~a  131 (1074)
                      .++
T Consensus       396 ~~A  398 (553)
T PRK12370        396 NEC  398 (553)
T ss_pred             HHH
Confidence            653

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=96.84  E-value=0.0081  Score=70.46  Aligned_cols=55  Identities=18%  Similarity=0.262  Sum_probs=40.7

Q ss_pred             HHHHHHHHhCCCEEEeCceEEEEEe-cCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927        952 KQFQRILGKQGMQFKLGTKVTGASK-SGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus       952 ~~~~~~l~~~gV~i~~~~~v~~i~~-~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
                      +.+.+...+.|+++++++++++++. +++.+.|++..   +|+..++.+|.||-|-|..
T Consensus       107 ~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~---~G~~~~i~ad~vVgADG~~  162 (392)
T PRK08243        107 RDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEK---DGEEHRLDCDFIAGCDGFH  162 (392)
T ss_pred             HHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEc---CCeEEEEEeCEEEECCCCC
Confidence            3444555677999999999999876 55566677643   3555689999999998864

>PRK06834 hypothetical protein; Provisional

Probab=96.84  E-value=0.0022  Score=77.24  Aligned_cols=101  Identities=16%  Similarity=0.148  Sum_probs=64.1

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhcccc---cc---ccch------------hhhhh---------hh-----
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDK---GV---KLNL------------ETMMG---------TK-----  837 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~---g~---~~~~------------~~~~~---------~~-----  837 (1074)
                      .+|+||||||+|+.+|+.|++     +++|+.+..   +.   .+..            ..+..         +.     
T Consensus         4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~   83 (488)
T PRK06834          4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRLD   83 (488)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEecc
Confidence            459999999999999999999     677765421   11   1100            00000         00     


Q ss_pred             -h------H-----HHhhhhhhHHHHhhhCCeEEEee-eEEEe--cCCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        838 -S------A-----AVKALTGGIAHLFKSNKVTQLNG-HGKIT--GPNTVTVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       838 -~------~-----~~~~l~~~~~~~l~~~gV~~~~g-~v~~i--d~~~~~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                       .      .     ....+...+.+.+...||+++.+ +++.+  +.+.+.+++.+|  .++.+|+||.|.|.++
T Consensus        84 ~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g--~~i~a~~vVgADG~~S  156 (488)
T PRK06834         84 ISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDG--RTLRAQYLVGCDGGRS  156 (488)
T ss_pred             cccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCC--CEEEeCEEEEecCCCC
Confidence             0      0     00112223445566779999999 46655  345677777777  5899999999999976

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=96.83  E-value=0.13  Score=54.24  Aligned_cols=62  Identities=19%  Similarity=0.177  Sum_probs=46.5

Q ss_pred             ChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHH
Q psy14927         49 DPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFY  128 (1074)
Q Consensus        49 ~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y  128 (1074)
                      ....+...|..+...|++++|.+.|.++-+.                     .+.+..+...+|..+...|++++|+++|
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~---------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~   88 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEH---------------------DPDDYLAYLALALYYQQLGELEKAEDSF   88 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------------------CcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3567778899999999999999988876321                     2234556677888888888888888887


Q ss_pred             HHh
Q psy14927        129 SVA  131 (1074)
Q Consensus       129 ~~a  131 (1074)
                      .++
T Consensus        89 ~~a   91 (234)
T TIGR02521        89 RRA   91 (234)
T ss_pred             HHH
Confidence            654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=96.80  E-value=0.013  Score=66.88  Aligned_cols=44  Identities=30%  Similarity=0.393  Sum_probs=39.5

Q ss_pred             CeeeCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHhhC
Q psy14927       1029 RVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus      1029 ~I~Vd~~~~ts~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I~~ 1072 (1074)
                      +|.+|+.+.|+++|+|++||+++....+..|..+|-.+|..|+.
T Consensus       438 ri~~d~~~~t~i~gLy~aGdGAG~argI~~Aaa~Gi~~A~~i~~  481 (486)
T COG2509         438 RIKVDEDLSTSIKGLYPAGDGAGLARGIVSAAADGIKAAEGIAR  481 (486)
T ss_pred             eEeecccceeeecceEEccccccccchhHHHhhhhHHHHHHHHH
Confidence            47788888999999999999999877889999999999999874

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=96.80  E-value=0.0022  Score=76.02  Aligned_cols=95  Identities=19%  Similarity=0.132  Sum_probs=63.9

Q ss_pred             hhhhhccccchHHHHHHHhhhhhhhcc-------ccccccch----hhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-e
Q psy14927        796 VVLNTLGNCAAVQANYHLATKLFTQAG-------DKGVKLNL----ETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-H  863 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~~l~e~~~-------~~g~~~~~----~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~  863 (1074)
                      +|+|||||+.|+..|..++. .+....       ..+..+.+    ..+.+..   ...+.....+.+++.||+++.+ .
T Consensus       175 ~vvVvGgG~~GvE~A~~l~~-~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~---~~~~~~~~~~~L~~~gV~v~~~~~  250 (424)
T PTZ00318        175 HFVVVGGGPTGVEFAAELAD-FFRDDVRNLNPELVEECKVTVLEAGSEVLGSF---DQALRKYGQRRLRRLGVDIRTKTA  250 (424)
T ss_pred             EEEEECCCHHHHHHHHHHHH-HHHHHHHhhhhcccccCEEEEEcCCCcccccC---CHHHHHHHHHHHHHCCCEEEeCCe
Confidence            48999999999999999986 222110       01111111    1111211   1344555778888999999988 5


Q ss_pred             EEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCC
Q psy14927        864 GKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       864 v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      ++.++++.  |++++|  .++.+|.+|+++|..|+
T Consensus       251 v~~v~~~~--v~~~~g--~~i~~d~vi~~~G~~~~  281 (424)
T PTZ00318        251 VKEVLDKE--VVLKDG--EVIPTGLVVWSTGVGPG  281 (424)
T ss_pred             EEEEeCCE--EEECCC--CEEEccEEEEccCCCCc
Confidence            77887764  556777  58999999999998875

>KOG0495|consensus

Probab=96.79  E-value=0.17  Score=59.76  Aligned_cols=318  Identities=14%  Similarity=0.154  Sum_probs=181.4

Q ss_pred             HHhhhcCCHHHHHHHHHHcCcccchh------hhHhhh---cHHHHHHHhhc-----CCChHHHHHHHHHHHhccCHHHH
Q psy14927          4 EETMKNGDIDRAIRMFEKAETHQQHV------PRMLLE---NTDKLEKYIIQ-----SKDPVLLKWWAQYIESTEDMDLA   69 (1074)
Q Consensus         4 ~~~~~~g~~~eA~~~Ye~~~~~~~~~------~~~~~~---~~~~~~~~~~~-----~~~~~l~~~~a~~~e~~~~~~~A   69 (1074)
                      +.++.++.++=|...|-.+-+....=      +-|+-+   .-..++.++.+     ++++.||..||+-+--.|+...|
T Consensus       524 ~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~a  603 (913)
T KOG0495|consen  524 QSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAA  603 (913)
T ss_pred             HHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHH
Confidence            56888999999999998887654222      223322   22344444444     57889999999988888999888


Q ss_pred             HH----HHHHhhC----hhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHH
Q psy14927         70 MK----YYEEARD----YLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLC  141 (1074)
Q Consensus        70 ~~----~y~~a~d----~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la  141 (1074)
                      ..    +|+...+    |..+|++.....++++|..+...+.+.+..-   |.|.      .-+.|-.-.+..++|++|+
T Consensus       604 r~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTe---Rv~m------Ks~~~er~ld~~eeA~rll  674 (913)
T KOG0495|consen  604 RVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTE---RVWM------KSANLERYLDNVEEALRLL  674 (913)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcc---hhhH------HHhHHHHHhhhHHHHHHHH
Confidence            75    4444433    4678889999999999999877554433221   1111      1122223334445555555


Q ss_pred             HHhCchHHHHHHhhhcCc--hhHHHHHHHHcc-CChhHHHHHHH---------------------HhCChHHHHHHHHhh
Q psy14927        142 KEQALDDQLWNLALSAGP--SEQIEAATYLET-IEPDKAVLLYH---------------------KAGALHKALDLAFKL  197 (1074)
Q Consensus       142 ~~~~~~~~~~~l~~~~~~--~~~~~~A~~~e~-~~~~~A~~ly~---------------------kaG~~~kAl~l~~~~  197 (1074)
                      ++.         ...++.  ..++..++.+|+ ++.+.|-..|.                     |.|++.+|--.+-+.
T Consensus       675 Ee~---------lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildra  745 (913)
T KOG0495|consen  675 EEA---------LKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRA  745 (913)
T ss_pred             HHH---------HHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHH
Confidence            443         122222  345556666666 45566665554                     456666666665554


Q ss_pred             ccCCc-chHHHHHHHHHHhcCCChhhHHHhhhhcch-----HHHHHHH-------------HHHHhcCCCCCChhHHHHH
Q psy14927        198 TLSNS-GLVFQIKAMKCLLKSGDTNKIIFFAGVSRM-----KEIYVMA-------------ANYLQSSDWKSQPELLKSI  258 (1074)
Q Consensus       198 ~~~~~-~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~-----~~l~~~a-------------a~yl~~~~~~~~~~~~~~i  258 (1074)
                      -+-|. +..+|+.+.+.=++.|+.+.+-.....+-|     ..||.-+             .|=|..-  +.||...-.|
T Consensus       746 rlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphVllai  823 (913)
T KOG0495|consen  746 RLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHVLLAI  823 (913)
T ss_pred             HhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhc--cCCchhHHHH
Confidence            33332 345788888888887777665333322211     2333322             2333332  5667777777


Q ss_pred             HHHHHccCCHHHHHHHHHHHHhHHHHhhcCHHHHHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHhhcCChHHHh
Q psy14927        259 ISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDS-MYETLKSSVVEKLAEVEIDEFGNYEKGL  337 (1074)
Q Consensus       259 ~~~Y~k~~~~~~aa~~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~  337 (1074)
                      .++|-.-+.++++-..+....... ..+||.=.   .+   ++.-..+|.. ...++.        +..+.  -|+.- =
T Consensus       824 a~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa---~f---ykfel~hG~eed~kev~--------~~c~~--~EP~h-G  885 (913)
T KOG0495|consen  824 AKLFWSEKKIEKAREWFERAVKKD-PDNGDAWA---WF---YKFELRHGTEEDQKEVL--------KKCET--AEPTH-G  885 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccC-CccchHHH---HH---HHHHHHhCCHHHHHHHH--------HHHhc--cCCCC-C
Confidence            777777777777777777777776 55665322   22   2222333321 111111        11111  11111 1


Q ss_pred             hHHHHHHHHHhhccCcchhHHH
Q psy14927        338 GALNEAKRCLLKHNDSMYETLK  359 (1074)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~i~~  359 (1074)
                      ..|..+++++..|-.-.-.||.
T Consensus       886 ~~W~avSK~i~n~~~t~~eiL~  907 (913)
T KOG0495|consen  886 ELWQAVSKDIKNWRKTPEEILL  907 (913)
T ss_pred             cHHHHHhhhHHhccCCHHHHHH
Confidence            2678888998888877766765

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=96.77  E-value=0.0042  Score=72.71  Aligned_cols=56  Identities=21%  Similarity=0.369  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHhCC-CEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927        949 EVAKQFQRILGKQG-MQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus       949 ~~~~~~~~~l~~~g-V~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
                      .+...+.+.+.+.+ |+++.++.|+.++.+++.+.+++.. +    ++++.||+||-|-|..
T Consensus       105 ~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~-d----G~~~~a~llVgADG~~  161 (387)
T COG0654         105 DLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSF-D----GETLDADLLVGADGAN  161 (387)
T ss_pred             HHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcC-C----CcEEecCEEEECCCCc
Confidence            35566777777665 9999999999999988777787773 2    3499999999998853

>PRK10015 oxidoreductase; Provisional

Probab=96.77  E-value=0.0089  Score=70.88  Aligned_cols=51  Identities=18%  Similarity=0.309  Sum_probs=36.8

Q ss_pred             HHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927        952 KQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus       952 ~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
                      ..+.+..++.|++++.++.|+.+..+++.+.....+      +.++.+|.||.|.|.
T Consensus       112 ~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~------~~~i~A~~VI~AdG~  162 (429)
T PRK10015        112 PWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAG------DDILEANVVILADGV  162 (429)
T ss_pred             HHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeC------CeEEECCEEEEccCc
Confidence            345566677899999999999987765544322222      357999999999986

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=96.75  E-value=0.0092  Score=73.10  Aligned_cols=59  Identities=19%  Similarity=0.401  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHh-CCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcc
Q psy14927        950 VAKQFQRILGK-QGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRP 1010 (1074)
Q Consensus       950 ~~~~~~~~l~~-~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p 1010 (1074)
                      +.+.+.+.+.+ .||++++++++++++.+++++.+++++.  +|+..++.+|.||-|.|...
T Consensus       115 le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~--~G~~~~i~ad~vVgADG~~S  174 (538)
T PRK06183        115 LEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDA--DGQRETVRARYVVGCDGANS  174 (538)
T ss_pred             HHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcC--CCCEEEEEEEEEEecCCCch
Confidence            44555666665 4999999999999998888888887642  24457899999999988643

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=96.75  E-value=0.003  Score=73.14  Aligned_cols=57  Identities=21%  Similarity=0.389  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEcCEEEEccCCcc
Q psy14927        949 EVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRP 1010 (1074)
Q Consensus       949 ~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p 1010 (1074)
                      ++...+.+.+.++|+++.+++.|..|+..+++ ..+.+.+    |+.+ ++|+.||.|.|.-.
T Consensus       154 ~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~----g~~~-~~ak~Vin~AGl~A  211 (429)
T COG0579         154 ELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSN----GEET-LEAKFVINAAGLYA  211 (429)
T ss_pred             HHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecC----CcEE-EEeeEEEECCchhH
Confidence            35666777778889999999999999998775 3343333    4334 99999999998654

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=96.74  E-value=0.0038  Score=76.90  Aligned_cols=85  Identities=8%  Similarity=0.143  Sum_probs=55.9

Q ss_pred             hhHHhhcCCcEEEEecCCccCCCC--------------CCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEe
Q psy14927        922 GSVWGRLGAEVTAIEFMNAIGGMG--------------IDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIE  986 (1074)
Q Consensus       922 A~~l~~~G~~Vtlv~~~~~~~~~~--------------~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~  986 (1074)
                      +..+...|..++++.+...++ +.              ....+...+.+.+++.||+++.++.++++..+++. +.|.+.
T Consensus       175 ~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~  253 (574)
T PRK12842        175 KHFFNATRSLTSFIYVAKRLA-THLKDLALYRRGTQVTSGNALAARLAKSALDLGIPILTGTPARELLTEGGRVVGARVI  253 (574)
T ss_pred             HHHHhhccchhHHHHHHHHHH-hhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEE
Confidence            445556666666655444443 21              12446666778888999999999999998865554 345554


Q ss_pred             eccCCCCceEEEcC-EEEEccCCcc
Q psy14927        987 NVKDPTKKEELSCD-ALLVCVGRRP 1010 (1074)
Q Consensus       987 ~~~~~g~~~~i~~D-~vi~a~G~~p 1010 (1074)
                      +   .+....+.++ .||+|+|..+
T Consensus       254 ~---~~~~~~i~a~k~VVlAtGg~~  275 (574)
T PRK12842        254 D---AGGERRITARRGVVLACGGFS  275 (574)
T ss_pred             c---CCceEEEEeCCEEEEcCCCcc
Confidence            4   2223467886 7999999765

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=96.73  E-value=0.0017  Score=76.38  Aligned_cols=91  Identities=23%  Similarity=0.208  Sum_probs=69.7

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEec
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITG  868 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id  868 (1074)
                      ++|+|+|||+.|+.+|..+++     ++++..+..++.+..           ..+...+.+.++..||+++.+ .+..++
T Consensus       137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~-----------~~~~~~~~~~l~~~gi~~~~~~~~~~i~  205 (415)
T COG0446         137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD-----------PEVAEELAELLEKYGVELLLGTKVVGVE  205 (415)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhh-----------HHHHHHHHHHHHHCCcEEEeCCceEEEE
Confidence            349999999999999999999     788888887776643           223334677788889999998 467777


Q ss_pred             CCeEE-----EEeCCCCeeEEEcCeEEEccCCCCC
Q psy14927        869 PNTVT-----VIKSDGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       869 ~~~~~-----v~~~~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      .....     +...++  ..+.+|.+++++|.+|+
T Consensus       206 ~~~~~~~~~~~~~~~~--~~~~~d~~~~~~g~~p~  238 (415)
T COG0446         206 GKGNTLVVERVVGIDG--EEIKADLVIIGPGERPN  238 (415)
T ss_pred             cccCcceeeEEEEeCC--cEEEeeEEEEeeccccc
Confidence            54321     455566  67999999999999984

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=96.72  E-value=0.014  Score=71.77  Aligned_cols=58  Identities=24%  Similarity=0.371  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHhC-CCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcc
Q psy14927        950 VAKQFQRILGKQ-GMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRP 1010 (1074)
Q Consensus       950 ~~~~~~~~l~~~-gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p 1010 (1074)
                      +...+.+.+.+. ||++++++++++++.+++++.+++.+.   +...++.+|.||.|.|...
T Consensus       127 le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~---~g~~~i~ad~vVgADG~~S  185 (547)
T PRK08132        127 VEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETP---DGPYTLEADWVIACDGARS  185 (547)
T ss_pred             HHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECC---CCcEEEEeCEEEECCCCCc
Confidence            344555666554 799999999999998777777766541   2235799999999998654

>KOG2076|consensus

Probab=96.70  E-value=0.39  Score=59.02  Aligned_cols=284  Identities=17%  Similarity=0.139  Sum_probs=159.5

Q ss_pred             ChHHHHHH--HHHHHhccCHHHHHHHHHH--------hhChhhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHH
Q psy14927         49 DPVLLKWW--AQYIESTEDMDLAMKYYEE--------ARDYLSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLAR  113 (1074)
Q Consensus        49 ~~~l~~~~--a~~~e~~~~~~~A~~~y~~--------a~d~~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~  113 (1074)
                      +|++...+  |..+-.+|++++|.+...-        .-=|.-+.+|+...|+++++....-     +++|.+-..++|.
T Consensus       136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~lad  215 (895)
T KOG2076|consen  136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLAD  215 (895)
T ss_pred             CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence            34455555  4455567888888877654        2234566677788888888765422     5678888889999


Q ss_pred             HHHhcCChHHHHHHHHHhCCh--------HHHHHHHHHhCc----hHHHHHHhhhcCchhHHHHHHHHccCChhHHHHHH
Q psy14927        114 QYENSGQFDEAIHFYSVAGSC--------GNAVRLCKEQAL----DDQLWNLALSAGPSEQIEAATYLETIEPDKAVLLY  181 (1074)
Q Consensus       114 ~~~~~g~~~~Ai~~y~~a~~~--------~~A~~la~~~~~----~~~~~~l~~~~~~~~~~~~A~~~e~~~~~~A~~ly  181 (1074)
                      ..+++|++.+|+-+|.++=+.        -+=..|++++|.    |+-+..+.+..+|.+...    ++. -....+..|
T Consensus       216 ls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er----~~d-~i~~~~~~~  290 (895)
T KOG2076|consen  216 LSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIER----IED-LIRRVAHYF  290 (895)
T ss_pred             HHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHH----HHH-HHHHHHHHH
Confidence            999999999998888876432        234457777773    333444454455433221    000 023456667


Q ss_pred             HHhCChHHHHHHHHhhccC--------Cc----chHH----HHHHHHHHhcCCC------hhh-----------------
Q psy14927        182 HKAGALHKALDLAFKLTLS--------NS----GLVF----QIKAMKCLLKSGD------TNK-----------------  222 (1074)
Q Consensus       182 ~kaG~~~kAl~l~~~~~~~--------~~----~~~~----~~~a~k~l~~~~~------~~~-----------------  222 (1074)
                      +..+..++|++.+...-..        |-    +++-    +-++.+++...-.      ...                 
T Consensus       291 ~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~  370 (895)
T KOG2076|consen  291 ITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEV  370 (895)
T ss_pred             HHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccC
Confidence            7777777777766553211        10    1110    2233333321111      000                 


Q ss_pred             ---------HHHh---hhhcchHHHHHHHHHHHhcCC--CCCChhHHHHHHHHHHccCCHHHHHHHHHHHHhHHHHhhcC
Q psy14927        223 ---------IIFF---AGVSRMKEIYVMAANYLQSSD--WKSQPELLKSIISFYSKGKAPHLLANFYVSCAQVEIDEFGN  288 (1074)
Q Consensus       223 ---------~i~~---a~~~r~~~l~~~aa~yl~~~~--~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~a~~ei~e~~~  288 (1074)
                               +|.+   -..++..++-.-...+|...+  ...++..+..+.+.|+..+.|.+|-+|+..+...|  .|+|
T Consensus       371 ~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~--~~~~  448 (895)
T KOG2076|consen  371 GKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNRE--GYQN  448 (895)
T ss_pred             CCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc--cccc
Confidence                     1000   011122222222233333322  45668999999999999999999999999987776  5666


Q ss_pred             ----H-----HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhcCChHHHhhHHHH
Q psy14927        289 ----Y-----EKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGNYEKGLGALNE  342 (1074)
Q Consensus       289 ----y-----~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  342 (1074)
                          |     .+.++-+++|+..+.+.=...|..+-...  .+..++-. .|+|++|..-|.+
T Consensus       449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri--~Lasl~~~-~g~~EkalEtL~~  508 (895)
T KOG2076|consen  449 AFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARI--TLASLYQQ-LGNHEKALETLEQ  508 (895)
T ss_pred             hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhh--hHHHHHHh-cCCHHHHHHHHhc
Confidence                2     23344455555555554444443322111  23445555 5999988876655

>PRK09126 hypothetical protein; Provisional

Probab=96.67  E-value=0.008  Score=70.50  Aligned_cols=54  Identities=22%  Similarity=0.335  Sum_probs=40.5

Q ss_pred             HHHHHHH-HhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCccc
Q psy14927        952 KQFQRIL-GKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPY 1011 (1074)
Q Consensus       952 ~~~~~~l-~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~ 1011 (1074)
                      +.+.+.+ +..||+++.++++++++.+++++.|++.+      +.++.+|.||.|.|..+.
T Consensus       114 ~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~------g~~~~a~~vI~AdG~~S~  168 (392)
T PRK09126        114 RAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLAN------GRRLTARLLVAADSRFSA  168 (392)
T ss_pred             HHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcC------CCEEEeCEEEEeCCCCch
Confidence            3333444 45799999999999998776766676654      357999999999997643

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=96.67  E-value=0.13  Score=60.40  Aligned_cols=52  Identities=6%  Similarity=-0.054  Sum_probs=28.3

Q ss_pred             hhhcchHHHHHHHHHHHhcC-CCCCChhHHHHHHHHHHccCCHHHHHHHHHHH
Q psy14927        227 AGVSRMKEIYVMAANYLQSS-DWKSQPELLKSIISFYSKGKAPHLLANFYVSC  278 (1074)
Q Consensus       227 a~~~r~~~l~~~aa~yl~~~-~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~  278 (1074)
                      +..+-..+.|..|-.|++.. ..+.++...-.+.++|.+.+..++|...|..-
T Consensus       335 grl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~  387 (398)
T PRK10747        335 GQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDG  387 (398)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            33333333355555666553 12223333345677788888887777666543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=96.65  E-value=0.11  Score=66.09  Aligned_cols=81  Identities=11%  Similarity=0.044  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHhhCh--------hhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHh
Q psy14927         51 VLLKWWAQYIESTEDMDLAMKYYEEARDY--------LSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYEN  117 (1074)
Q Consensus        51 ~l~~~~a~~~e~~~~~~~A~~~y~~a~d~--------~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~  117 (1074)
                      .+. -|++.+-..|++++|+.+++++-|-        ..+++++...|++++|.++.+     ++++.+....++..+.+
T Consensus        70 av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~  148 (822)
T PRK14574         70 QVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQAD  148 (822)
T ss_pred             hHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Confidence            344 6777777779999999999998753        222446677799999988876     35666666677777777


Q ss_pred             cCChHHHHHHHHHhC
Q psy14927        118 SGQFDEAIHFYSVAG  132 (1074)
Q Consensus       118 ~g~~~~Ai~~y~~a~  132 (1074)
                      .|+.++|++.+.++.
T Consensus       149 ~~q~~eAl~~l~~l~  163 (822)
T PRK14574        149 AGRGGVVLKQATELA  163 (822)
T ss_pred             cCCHHHHHHHHHHhc
Confidence            777777766655443

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=96.65  E-value=0.003  Score=73.25  Aligned_cols=98  Identities=11%  Similarity=0.073  Sum_probs=56.3

Q ss_pred             hhhhhccccchHHHHHHHhh-------hhhhhccccccccchhhhhhhhh----HHHhhh--------------------
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVKLNLETMMGTKS----AAVKAL--------------------  844 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~~~~~~~~~~~~----~~~~~l--------------------  844 (1074)
                      +|+|||||+||+++|..|++       .++|+.+..++.-.|........    ...+.+                    
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~   80 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK   80 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence            38999999999999999985       57777664444211110000000    000000                    


Q ss_pred             -------hhhHHHH-hhhCCeEEEee-eEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        845 -------TGGIAHL-FKSNKVTQLNG-HGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       845 -------~~~~~~~-l~~~gV~~~~g-~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                             ...+.+. +...+..+..+ +|+.++++.++  +.+|  .++++|.||-|.|..+
T Consensus        81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~~v~--l~dg--~~~~A~~VI~A~G~~s  138 (370)
T TIGR01789        81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDADGVD--LAPG--TRINARSVIDCRGFKP  138 (370)
T ss_pred             CCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCCEEE--ECCC--CEEEeeEEEECCCCCC
Confidence                   0011122 22223334444 78888777644  4677  6899999999999775

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=96.64  E-value=0.0054  Score=75.16  Aligned_cols=84  Identities=13%  Similarity=0.123  Sum_probs=58.7

Q ss_pred             HhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEcC-EE
Q psy14927        925 WGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCD-AL 1002 (1074)
Q Consensus       925 l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D-~v 1002 (1074)
                      +.++|.+|+++...+... ...+..+...+.+.+++.||++++++.++++..+++. +.|....   +++...+.++ .|
T Consensus       186 ~~~~~~~v~~~~~~~~~~-~~~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~g~v~Gv~~~~---~g~~~~i~A~~~V  261 (557)
T PRK07843        186 ALKVGARTLWAKATGKNL-LGMGQALAAGLRIGLQRAGVPVLLNTPLTDLYVEDGRVTGVHAAE---SGEPQLIRARRGV  261 (557)
T ss_pred             HHHHHHHHHHHhccCCCc-ccCcHHHHHHHHHHHHcCCCEEEeCCEEEEEEEeCCEEEEEEEEe---CCcEEEEEeceeE
Confidence            455666777765554444 4567778888889999999999999999999875444 3354443   3555678885 68


Q ss_pred             EEccC-CcccC
Q psy14927       1003 LVCVG-RRPYT 1012 (1074)
Q Consensus      1003 i~a~G-~~p~~ 1012 (1074)
                      |+|+| +.+|.
T Consensus       262 IlAtGG~~~n~  272 (557)
T PRK07843        262 ILASGGFEHNE  272 (557)
T ss_pred             EEccCCcCcCH
Confidence            88775 55543

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=96.62  E-value=0.0024  Score=69.67  Aligned_cols=35  Identities=17%  Similarity=0.207  Sum_probs=31.3

Q ss_pred             chhhhhhccccchHHHHHHHhh----hhhhhcccccccc
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT----KLFTQAGDKGVKL  828 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~----~l~e~~~~~g~~~  828 (1074)
                      +.+|.|||+|.+||+||+.|++    |+||.....||.-
T Consensus         8 r~~IAVIGsGisGLSAA~~Ls~rhdVTLfEA~~rlGGha   46 (447)
T COG2907           8 RRKIAVIGSGISGLSAAWLLSRRHDVTLFEADRRLGGHA   46 (447)
T ss_pred             CcceEEEcccchhhhhHHhhhcccceEEEeccccccCcc
Confidence            4459999999999999999999    9999999888854

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=96.61  E-value=0.0035  Score=79.89  Aligned_cols=90  Identities=12%  Similarity=0.039  Sum_probs=62.4

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeee-EEEecC
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGH-GKITGP  869 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~-v~~id~  869 (1074)
                      +|+|||||+.|+.+|..|++     ++++..+...        ....+   ......+.+.+++.||+++.++ ++.+..
T Consensus       142 ~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll--------~~~ld---~~~~~~l~~~l~~~GV~v~~~~~v~~i~~  210 (785)
T TIGR02374       142 KAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLM--------AKQLD---QTAGRLLQRELEQKGLTFLLEKDTVEIVG  210 (785)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchh--------hhhcC---HHHHHHHHHHHHHcCCEEEeCCceEEEEc
Confidence            48999999999999999987     3444332210        00011   2223345667788899999994 666643


Q ss_pred             C--eEEEEeCCCCeeEEEcCeEEEccCCCCC
Q psy14927        870 N--TVTVIKSDGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       870 ~--~~~v~~~~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      +  ...|++++|  .++.+|.||+|+|.+|.
T Consensus       211 ~~~~~~v~~~dG--~~i~~D~Vi~a~G~~Pn  239 (785)
T TIGR02374       211 ATKADRIRFKDG--SSLEADLIVMAAGIRPN  239 (785)
T ss_pred             CCceEEEEECCC--CEEEcCEEEECCCCCcC
Confidence            2  345667888  68999999999999984

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=96.58  E-value=0.011  Score=70.38  Aligned_cols=56  Identities=20%  Similarity=0.357  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeE--EEEEeeccCCCCceEEEcCEEEEccCCcc
Q psy14927        948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNI--TVTIENVKDPTKKEELSCDALLVCVGRRP 1010 (1074)
Q Consensus       948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~--~v~~~~~~~~g~~~~i~~D~vi~a~G~~p 1010 (1074)
                      ..+...+.+...+.||+++.++ |..+.-++++.  .|.+.+      +.++.+|.+|-|+|++.
T Consensus       154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~------g~~i~ad~~IDASG~~s  211 (454)
T PF04820_consen  154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDD------GRTIEADFFIDASGRRS  211 (454)
T ss_dssp             HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETT------SEEEEESEEEE-SGGG-
T ss_pred             HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECC------CCEEEEeEEEECCCccc
Confidence            3456677777888999999885 66666554553  344333      67899999999999853

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK05868 hypothetical protein; Validated

Probab=96.57  E-value=0.018  Score=67.03  Aligned_cols=44  Identities=16%  Similarity=0.333  Sum_probs=36.2

Q ss_pred             hCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927        960 KQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus       960 ~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
                      ..|++++++++++.++.+++++.|++.+      +.++.+|+||-|-|..
T Consensus       116 ~~~v~i~~~~~v~~i~~~~~~v~v~~~d------g~~~~adlvIgADG~~  159 (372)
T PRK05868        116 QPSVEYLFDDSISTLQDDGDSVRVTFER------AAAREFDLVIGADGLH  159 (372)
T ss_pred             cCCcEEEeCCEEEEEEecCCeEEEEECC------CCeEEeCEEEECCCCC
Confidence            4689999999999998777778888766      3468899999998854

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=96.57  E-value=0.041  Score=54.24  Aligned_cols=62  Identities=21%  Similarity=0.213  Sum_probs=51.2

Q ss_pred             HHHHHcc-CChhHHHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHH
Q psy14927        165 AATYLET-IEPDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYL  243 (1074)
Q Consensus       165 ~A~~~e~-~~~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl  243 (1074)
                      ++++.++ +-+++|+-+|.+.|++.+|++++++.                   .+|.+.+++|+....++++|..+++|.
T Consensus        75 ~~~~c~~~~l~~~~~~l~~k~~~~~~Al~~~l~~-------------------~~d~~~a~~~~~~~~~~~lw~~~~~~~  135 (140)
T smart00299       75 VGKLCEKAKLYEEAVELYKKDGNFKDAIVTLIEH-------------------LGNYEKAIEYFVKQNNPELWAEVLKAL  135 (140)
T ss_pred             HHHHHHHcCcHHHHHHHHHhhcCHHHHHHHHHHc-------------------ccCHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            3344444 34678999999999999999999882                   489999999999999999999999887


Q ss_pred             hc
Q psy14927        244 QS  245 (1074)
Q Consensus       244 ~~  245 (1074)
                      ..
T Consensus       136 l~  137 (140)
T smart00299      136 LD  137 (140)
T ss_pred             Hc
Confidence            54

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=96.57  E-value=0.0033  Score=74.01  Aligned_cols=50  Identities=16%  Similarity=0.149  Sum_probs=37.8

Q ss_pred             hhHHHHhhhCCeEEEee-eEEEec--CCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        846 GGIAHLFKSNKVTQLNG-HGKITG--PNTVTVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       846 ~~~~~~l~~~gV~~~~g-~v~~id--~~~~~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                      ..+.+.+...||+++.+ +++.++  .+.+.+++++|  .++.+|.||.|+|..+
T Consensus       115 ~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g--~~~~ad~vI~AdG~~S  167 (403)
T PRK07333        115 NALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDG--SVLEARLLVAADGARS  167 (403)
T ss_pred             HHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCC--CEEEeCEEEEcCCCCh
Confidence            33556666679999988 566664  45566777777  5799999999999875

>PRK11445 putative oxidoreductase; Provisional

Probab=96.56  E-value=0.0056  Score=70.67  Aligned_cols=44  Identities=16%  Similarity=0.192  Sum_probs=31.3

Q ss_pred             hCCeEEEee-eEEEec--CCeEEEEe-CCCCeeEEEcCeEEEccCCCC
Q psy14927        854 SNKVTQLNG-HGKITG--PNTVTVIK-SDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       854 ~~gV~~~~g-~v~~id--~~~~~v~~-~~G~~~~i~~d~lIIATG~~p  897 (1074)
                      ..||+++.+ .++.+.  .+.+.|+. ++|...++++|.||.|+|+..
T Consensus       110 ~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S  157 (351)
T PRK11445        110 PASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANS  157 (351)
T ss_pred             hcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCc
Confidence            468999988 455553  34556654 566444799999999999974

>PRK08013 oxidoreductase; Provisional

Probab=96.55  E-value=0.011  Score=69.59  Aligned_cols=54  Identities=6%  Similarity=0.090  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHhC-CCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927        950 VAKQFQRILGKQ-GMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus       950 ~~~~~~~~l~~~-gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
                      +...+.+.+.+. ||+++.+++++.++.+++++.+++.+      +.++.+|.||-|-|..
T Consensus       113 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~------g~~i~a~lvVgADG~~  167 (400)
T PRK08013        113 IHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKD------GSMLTARLVVGADGAN  167 (400)
T ss_pred             HHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcC------CCEEEeeEEEEeCCCC
Confidence            344555555554 89999999999998777777777654      3579999999998854

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=96.55  E-value=0.003  Score=73.52  Aligned_cols=100  Identities=14%  Similarity=0.127  Sum_probs=61.9

Q ss_pred             hhhhhccccchHHHHHHH--hh-----hhhhhcccc--ccccch----------hhhhhhh------------hH-----
Q psy14927        796 VVLNTLGNCAAVQANYHL--AT-----KLFTQAGDK--GVKLNL----------ETMMGTK------------SA-----  839 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~l--a~-----~l~e~~~~~--g~~~~~----------~~~~~~~------------~~-----  839 (1074)
                      +|+||||||||+++|+.|  ++     .++|+.+..  .....|          .......            ..     
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~   80 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP   80 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence            389999999999999999  44     567665443  111100          0000000            00     


Q ss_pred             ----HHhhhhhhHHHHhhhCCeEEEeeeEEEecCCe--EEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        840 ----AVKALTGGIAHLFKSNKVTQLNGHGKITGPNT--VTVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       840 ----~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~--~~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                          ....+...+.+.+...|+.++.+.|+.|+...  ..|++++|  .+++++.||-|+|..+
T Consensus        81 Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g--~~i~a~~VvDa~g~~~  142 (374)
T PF05834_consen   81 YCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADG--RTIRARVVVDARGPSS  142 (374)
T ss_pred             eEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCC--CEEEeeEEEECCCccc
Confidence                00112222444455567888777888887543  46778888  6899999999999654

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK11189 lipoprotein NlpI; Provisional

Probab=96.55  E-value=0.051  Score=61.05  Aligned_cols=83  Identities=13%  Similarity=0.090  Sum_probs=60.5

Q ss_pred             CCChHHHHHHHHHHHhccCHHHHHHHHHHhhC--------hhhhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHH
Q psy14927         47 SKDPVLLKWWAQYIESTEDMDLAMKYYEEARD--------YLSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLAR  113 (1074)
Q Consensus        47 ~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d--------~~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~  113 (1074)
                      ++++..|..+|..+...|+++.|..+|.++=.        +.+...+|...|++++|.+..+.     +.+.. ......
T Consensus        95 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~-~~~~~~  173 (296)
T PRK11189         95 PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY-RALWLY  173 (296)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHH
Confidence            56788999999999999999999999999733        23444557889999999887762     23321 112223


Q ss_pred             HHHhcCChHHHHHHHHH
Q psy14927        114 QYENSGQFDEAIHFYSV  130 (1074)
Q Consensus       114 ~~~~~g~~~~Ai~~y~~  130 (1074)
                      .....++.++|++.|.+
T Consensus       174 l~~~~~~~~~A~~~l~~  190 (296)
T PRK11189        174 LAESKLDPKQAKENLKQ  190 (296)
T ss_pred             HHHccCCHHHHHHHHHH
Confidence            45567889999998854

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=96.53  E-value=0.013  Score=68.30  Aligned_cols=54  Identities=13%  Similarity=0.248  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHhCC-CEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927        950 VAKQFQRILGKQG-MQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus       950 ~~~~~~~~l~~~g-V~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
                      +.+.+.+.+.+.| ++++.++.+++++.+++++.+++.+      +.++.+|.||.|.|..
T Consensus       108 l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~------g~~~~~~~vi~adG~~  162 (385)
T TIGR01988       108 LQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDD------GQQLRARLLVGADGAN  162 (385)
T ss_pred             HHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECC------CCEEEeeEEEEeCCCC
Confidence            4556667777777 9999999999998776766666554      3469999999998854

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=96.51  E-value=0.019  Score=67.97  Aligned_cols=54  Identities=24%  Similarity=0.415  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEE-EEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927        949 EVAKQFQRILGKQGMQFKLGTKVTGASKSGDNIT-VTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus       949 ~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~-v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
                      .+...+.+.+++.|++++.++.|++++.+++.+. |+..       +.++.+|.||+|+|.-
T Consensus       202 ~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~-------~~~~~a~~VV~a~G~~  256 (416)
T PRK00711        202 LFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTG-------GGVITADAYVVALGSY  256 (416)
T ss_pred             HHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeC-------CcEEeCCEEEECCCcc
Confidence            5566677788889999999999999987655532 3322       2368999999999963

>PRK07538 hypothetical protein; Provisional

Probab=96.51  E-value=0.016  Score=68.51  Aligned_cols=58  Identities=16%  Similarity=0.174  Sum_probs=40.5

Q ss_pred             HHHHHHHHHh-CC-CEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927        951 AKQFQRILGK-QG-MQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus       951 ~~~~~~~l~~-~g-V~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
                      ...+.+.+.+ .| +.+++++++++++.+++++.+.+.+.. +|++.++.+|.||-|-|..
T Consensus       105 ~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~-~g~~~~~~adlvIgADG~~  164 (413)
T PRK07538        105 QMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRA-GGDLVSVRGDVLIGADGIH  164 (413)
T ss_pred             HHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccC-CCccceEEeeEEEECCCCC
Confidence            3444455443 35 579999999999877666666665532 3456789999999998853

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=96.51  E-value=0.13  Score=61.50  Aligned_cols=159  Identities=11%  Similarity=0.054  Sum_probs=111.4

Q ss_pred             hHHHHHHHhhhh---HHHHHHHHHHHHhhhcHHHHHHHHHHhhCHHHHHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHH
Q psy14927        612 ITKQIILILIIY---RVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQ  688 (1074)
Q Consensus       612 ~~~~~~~~~~~~---~~l~~~~a~~~e~~~~~~~A~~~y~~ag~~~~ai~~~~~~~~~~~a~~v~~~~~~~~~~~~~A~~  688 (1074)
                      ++++.+|-|+-.   +.++..+|.++.+.+.+-+|...|.--|++.+|+..|..+++|+++..++.+.-+.+ ...+|+-
T Consensus       907 y~~~l~lyrYd~e~Qk~~~nifa~~l~~n~~~~~aa~aye~~gK~~Ea~gay~sA~mwrec~si~~q~~~~e-~~~~AE~  985 (1243)
T COG5290         907 YDFLLLLYRYDGELQKFKINIFAGNLVDNLYHISAAKAYEVEGKYIEAHGAYDSALMWRECGSISTQEKGYE-FNLCAEL  985 (1243)
T ss_pred             hHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhcchH-HHHHHHh
Confidence            566666666653   378999999999999999999999999999999999999999999999996555444 2333433


Q ss_pred             HH--------hcCCHHHHHHHHHHcCCHHHHHHH---hccHHHHHHHHHHhCCcccHHHH--HHHHHHHHHcCCHHHHHH
Q psy14927        689 YE--------NSGQFDEAIHFYSVAGSCGNAVRL---CGQLDAVESIASELNVQSDQDLI--LKCASYFARREHHDRAVQ  755 (1074)
Q Consensus       689 ~~--------~~g~~~~A~~~~~kag~~~~Av~m---a~~w~~a~~~A~~~~~~~~~~~~--~~~a~~~~~~~~~~~Ai~  755 (1074)
                      |.        +.|+-+.+-..|+  ..+.+|+-|   +.++++|+.+|..--....-..+  -.+++.|  -+.++.+..
T Consensus       986 L~S~l~ve~R~~~da~~i~l~yl--~N~~eava~~ckgs~y~ea~~~a~~s~~~e~~k~~~~~~LgE~F--g~~~El~ad 1061 (1243)
T COG5290         986 LPSDLLVEFRKAGDAEKILLTYL--ENLYEAVAMDCKGSEYREAFCEAMVSRLVESEKHYEAGQLGEEF--GGKPELAAD 1061 (1243)
T ss_pred             hhhhHHHHHHHhcCHHHHHHHHH--hCHHHHHHHHcccccchHHHHHHHHhhhhhHHHHhhhhhhhhhh--cccHHHHHH
Confidence            33        2455544444443  467777777   58888888877664221111111  1222222  356788889


Q ss_pred             HHHHhCCHHHHHHHHHHcCC
Q psy14927        756 MYAIARRYDQALSLIQTKHV  775 (1074)
Q Consensus       756 ~y~~ag~~~~Ai~~~~~~~~  775 (1074)
                      +|-+.+.-.+.++.|.....
T Consensus      1062 ~~~qikSq~~rlrvlr~kk~ 1081 (1243)
T COG5290        1062 EYVQIKSQGDRLRVLRDKKC 1081 (1243)
T ss_pred             HHHHHHHHHHHHHHHhhhhh
Confidence            99999888888888765533

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=96.49  E-value=0.02  Score=67.53  Aligned_cols=60  Identities=22%  Similarity=0.462  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927        949 EVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus       949 ~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
                      .+...+.+.+.+.|++++.++.|.++..+++.+.+.+.+.. .+++.++.+|.||+|+|..
T Consensus       198 ~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~-~~~~~~i~a~~vV~a~G~~  257 (410)
T PRK12409        198 KFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSA-EHPSRTLEFDGVVVCAGVG  257 (410)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCC-CCccceEecCEEEECCCcC
Confidence            45566678888999999999999999876666655544311 0013468999999999964

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=96.49  E-value=0.006  Score=72.56  Aligned_cols=104  Identities=18%  Similarity=0.156  Sum_probs=61.8

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccc----cccccc--------hh-hhhh-----------hhh------
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGD----KGVKLN--------LE-TMMG-----------TKS------  838 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~----~g~~~~--------~~-~~~~-----------~~~------  838 (1074)
                      +.+|+||||||||+++|+.|++     .++|+...    .|+.+.        +. .+..           ...      
T Consensus        39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~~  118 (450)
T PLN00093         39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGK  118 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEecc
Confidence            5579999999999999999999     57776532    122110        00 0000           000      


Q ss_pred             -----H-----HHhhhhhhHHHHhhhCCeEEEeeeEEEecC-----CeEEEEeCC-------CCeeEEEcCeEEEccCCC
Q psy14927        839 -----A-----AVKALTGGIAHLFKSNKVTQLNGHGKITGP-----NTVTVIKSD-------GSTEEVKTKNILIATGSE  896 (1074)
Q Consensus       839 -----~-----~~~~l~~~~~~~l~~~gV~~~~g~v~~id~-----~~~~v~~~~-------G~~~~i~~d~lIIATG~~  896 (1074)
                           .     ....+-..+.+...+.|++++.++++.++.     +.+.|++.+       |+..++.+|.||-|+|..
T Consensus       119 ~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~  198 (450)
T PLN00093        119 TLKPHEYIGMVRREVLDSFLRERAQSNGATLINGLFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGAN  198 (450)
T ss_pred             cCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEeceEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCcc
Confidence                 0     001111234455567799999887766541     234454422       433579999999999986


Q ss_pred             C
Q psy14927        897 V  897 (1074)
Q Consensus       897 p  897 (1074)
                      .
T Consensus       199 S  199 (450)
T PLN00093        199 S  199 (450)
T ss_pred             h
Confidence            5

>PRK07233 hypothetical protein; Provisional

Probab=96.47  E-value=0.014  Score=69.40  Aligned_cols=55  Identities=22%  Similarity=0.297  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927        948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus       948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
                      ..+.+.+.+.+++.|++|+++++|.+|+.+++++.+...+      +.++.+|.||++++.
T Consensus       198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~------~~~~~ad~vI~a~p~  252 (434)
T PRK07233        198 ATLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVD------GEEEDFDAVISTAPP  252 (434)
T ss_pred             HHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeC------CceEECCEEEECCCH
Confidence            4567778888888999999999999998766654433333      347899999998763

>KOG1155|consensus

Probab=96.43  E-value=0.25  Score=56.30  Aligned_cols=241  Identities=17%  Similarity=0.182  Sum_probs=134.2

Q ss_pred             CCChHHHHHHHHHHHhccCHHHHHHHHHH--------hhChhhhhhHhhccCCHHHHHHHHHhc-----CChHHHHHHHH
Q psy14927         47 SKDPVLLKWWAQYIESTEDMDLAMKYYEE--------ARDYLSMVRVLCFLQDFSRAAELANAS-----GDTAAAYHLAR  113 (1074)
Q Consensus        47 ~~~~~l~~~~a~~~e~~~~~~~A~~~y~~--------a~d~~~~vr~l~~~~~~~~a~~i~~~~-----~~~~~~~~la~  113 (1074)
                      ..++-+..+-|...-.+.++++|+..|+.        .+|.+---.+|.-.++-.+..-++.+.     =-++.|+.+|+
T Consensus       259 ~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaN  338 (559)
T KOG1155|consen  259 PNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIAN  338 (559)
T ss_pred             CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehh
Confidence            45677888888899999999999999975        344444444455555545555555432     25678999999


Q ss_pred             HHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHH-HHHccCChhHHHHHHHHhCChHHHHH
Q psy14927        114 QYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAA-TYLETIEPDKAVLLYHKAGALHKALD  192 (1074)
Q Consensus       114 ~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A-~~~e~~~~~~A~~ly~kaG~~~kAl~  192 (1074)
                      +|.-.++-+.||.||.+|-+.+---         -..+.           -.+ +|.|=++...|+.-|.+      |++
T Consensus       339 YYSlr~eHEKAv~YFkRALkLNp~~---------~~aWT-----------LmGHEyvEmKNt~AAi~sYRr------Avd  392 (559)
T KOG1155|consen  339 YYSLRSEHEKAVMYFKRALKLNPKY---------LSAWT-----------LMGHEYVEMKNTHAAIESYRR------AVD  392 (559)
T ss_pred             HHHHHHhHHHHHHHHHHHHhcCcch---------hHHHH-----------HhhHHHHHhcccHHHHHHHHH------HHh
Confidence            9999999999999988764433111         11111           133 34444777888888775      344


Q ss_pred             HHHhh-----ccC------C-c--chHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcCCCCCChhHHHHH
Q psy14927        193 LAFKL-----TLS------N-S--GLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPELLKSI  258 (1074)
Q Consensus       193 l~~~~-----~~~------~-~--~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~~~~~~~~~~~~i  258 (1074)
                      ++=.-     ++.      + +  .++|--+|.+|  |             ..++.+|+-+++-.+.+      ..+..+
T Consensus       393 i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--k-------------PnDsRlw~aLG~CY~kl------~~~~eA  451 (559)
T KOG1155|consen  393 INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--K-------------PNDSRLWVALGECYEKL------NRLEEA  451 (559)
T ss_pred             cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--C-------------CCchHHHHHHHHHHHHh------ccHHHH
Confidence            43220     000      0 0  00111122221  1             22334455555555555      333444


Q ss_pred             HHHHHccCCHHHH-HHHHHHHHhHHHHhhcCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhcCChHHHh
Q psy14927        259 ISFYSKGKAPHLL-ANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGNYEKGL  337 (1074)
Q Consensus       259 ~~~Y~k~~~~~~a-a~~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  337 (1074)
                      +.+|..+=...+. +.-+..+|+.- ++++++.+|-..+...+......+...+.-....+=  +...+.+ +++++.|.
T Consensus       452 iKCykrai~~~dte~~~l~~LakLy-e~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~f--LA~~f~k-~~~~~~As  527 (559)
T KOG1155|consen  452 IKCYKRAILLGDTEGSALVRLAKLY-EELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLF--LAEYFKK-MKDFDEAS  527 (559)
T ss_pred             HHHHHHHHhccccchHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHH--HHHHHHh-hcchHHHH
Confidence            4555444333332 24455667776 777777777777777776665445444433222221  3444555 56666555


Q ss_pred             h
Q psy14927        338 G  338 (1074)
Q Consensus       338 ~  338 (1074)
                      .
T Consensus       528 ~  528 (559)
T KOG1155|consen  528 Y  528 (559)
T ss_pred             H
Confidence            4

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=96.39  E-value=0.07  Score=61.29  Aligned_cols=126  Identities=17%  Similarity=0.200  Sum_probs=97.8

Q ss_pred             CCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhc-CCChHHHHHHHHHHHhccCHHHHHHHHHHhhChh--------
Q psy14927         10 GDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQ-SKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYL--------   80 (1074)
Q Consensus        10 g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~--------   80 (1074)
                      ++|..|++.|+-.. .+ +       --..+.+|+.. ++++-++..-++.+...++.++|.+.|.++-+-+        
T Consensus       308 a~YG~A~~~~~~~~-~d-~-------A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~  378 (484)
T COG4783         308 AQYGRALQTYLAGQ-YD-E-------ALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQL  378 (484)
T ss_pred             HHHHHHHHHHHhcc-cc-h-------HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHH
Confidence            45666666665544 22 1       12345556655 5788899999999999999999999999976642        


Q ss_pred             hhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhcCChHHHH----HHHHHhCChHHHHHHHHHh
Q psy14927         81 SMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQFDEAI----HFYSVAGSCGNAVRLCKEQ  144 (1074)
Q Consensus        81 ~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~g~~~~Ai----~~y~~a~~~~~A~~la~~~  144 (1074)
                      +..+.|...|++.+|.++.+     ++.++.....+|+-|.++|+..+|.    +.|-.+|+|++|+..++..
T Consensus       379 ~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A  451 (484)
T COG4783         379 NLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRA  451 (484)
T ss_pred             HHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            34455888999999999877     4678889999999999999998886    4567789999999887765

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=96.39  E-value=0.0078  Score=74.19  Aligned_cols=61  Identities=10%  Similarity=0.219  Sum_probs=44.5

Q ss_pred             CHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEc-CEEEEccCCcc
Q psy14927        947 DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSC-DALLVCVGRRP 1010 (1074)
Q Consensus       947 ~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~-D~vi~a~G~~p 1010 (1074)
                      +..+...+.+.+++.||+++.++.++++..+++. +.|.+.+   ++...++.+ +.||+|+|--.
T Consensus       216 g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~---~~~~~~i~a~k~VVlAtGg~~  278 (581)
T PRK06134        216 GNALVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVET---PGGLQEIRARKGVVLAAGGFP  278 (581)
T ss_pred             HHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEE---CCcEEEEEeCCEEEEcCCCcc
Confidence            3456677788889999999999999998765443 3455544   233456888 99999998654

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=96.37  E-value=0.021  Score=66.40  Aligned_cols=55  Identities=24%  Similarity=0.344  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927        948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus       948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
                      ..+...+.+.+.+.|++++.++.|+++..+++++.|.+.+      + ++.+|.||+|+|..
T Consensus       149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~------g-~~~a~~vV~A~G~~  203 (376)
T PRK11259        149 ELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTAD------G-TYEAKKLVVSAGAW  203 (376)
T ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCC------C-EEEeeEEEEecCcc
Confidence            4455556677778899999999999998866665554332      2 68999999999964

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=96.34  E-value=0.023  Score=67.19  Aligned_cols=65  Identities=14%  Similarity=0.177  Sum_probs=46.9

Q ss_pred             CCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEcCEEEEccCCccc
Q psy14927        946 IDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPY 1011 (1074)
Q Consensus       946 ~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~ 1011 (1074)
                      ....+...+.+.+++.||+|++++.++++..+++. +.+...+.. +|+...+.+..||+|+|--..
T Consensus       139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~-~g~~~~i~A~aVIlAtGG~~~  204 (417)
T PF00890_consen  139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPA-DGEFVRIKAKAVILATGGFGG  204 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETT-TCEEEEEEESEEEE----BGG
T ss_pred             cHHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECC-CCeEEEEeeeEEEeccCcccc
Confidence            34567778888999999999999999999876555 456666322 466678999999999986554

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=96.34  E-value=0.021  Score=56.74  Aligned_cols=82  Identities=11%  Similarity=0.066  Sum_probs=56.4

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHhhCh--------hhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHH
Q psy14927         50 PVLLKWWAQYIESTEDMDLAMKYYEEARDY--------LSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYE  116 (1074)
Q Consensus        50 ~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~--------~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~  116 (1074)
                      |.-+..+|..+...|++++|..+|.++=+.        ..+..++..+|++++|....+     .+++..+.+.+|..+.
T Consensus        24 p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~  103 (144)
T PRK15359         24 PETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLK  103 (144)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            333444566666677777777776653322        334444666666666666554     4678889999999999


Q ss_pred             hcCChHHHHHHHHHh
Q psy14927        117 NSGQFDEAIHFYSVA  131 (1074)
Q Consensus       117 ~~g~~~~Ai~~y~~a  131 (1074)
                      ..|++++|++.|.++
T Consensus       104 ~~g~~~eAi~~~~~A  118 (144)
T PRK15359        104 MMGEPGLAREAFQTA  118 (144)
T ss_pred             HcCCHHHHHHHHHHH
Confidence            999999999988654

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=96.33  E-value=0.024  Score=66.08  Aligned_cols=55  Identities=20%  Similarity=0.274  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927        948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus       948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
                      ..+...+.+.+++.|++++.++.|.++..+++.+.|.+.+       .++.+|.||+|+|..
T Consensus       145 ~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~-------~~i~a~~vV~aaG~~  199 (380)
T TIGR01377       145 EKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTK-------GSYQANKLVVTAGAW  199 (380)
T ss_pred             HHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCC-------CEEEeCEEEEecCcc
Confidence            3456667777888999999999999998866665555332       268999999999964

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK07236 hypothetical protein; Provisional

Probab=96.31  E-value=0.0081  Score=70.32  Aligned_cols=40  Identities=18%  Similarity=0.025  Sum_probs=30.9

Q ss_pred             CeEEEee-eEEEec--CCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        856 KVTQLNG-HGKITG--PNTVTVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       856 gV~~~~g-~v~~id--~~~~~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                      +++++.| +++.+.  .+.++|++++|  .++.+|.||.|-|...
T Consensus       112 ~~~i~~~~~v~~i~~~~~~v~v~~~~g--~~~~ad~vIgADG~~S  154 (386)
T PRK07236        112 AERYHLGETLVGFEQDGDRVTARFADG--RRETADLLVGADGGRS  154 (386)
T ss_pred             CcEEEcCCEEEEEEecCCeEEEEECCC--CEEEeCEEEECCCCCc
Confidence            4678888 466654  45677888888  6899999999999865

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=96.30  E-value=0.00099  Score=78.96  Aligned_cols=99  Identities=22%  Similarity=0.185  Sum_probs=27.6

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhccccccccchhh------------hhhh-hhHHHhhh-------------
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLET------------MMGT-KSAAVKAL-------------  844 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~------------~~~~-~~~~~~~l-------------  844 (1074)
                      +||||||||+|+.||+.+++     .|+|+.+.+|+......            ...+ ...+.+.+             
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~   80 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG   80 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence            38999999999999999999     78888887776431110            0000 00111111             


Q ss_pred             ------------hhhHHHHhhhCCeEEEeee-EEEecCCe---EEEEe--CCCCeeEEEcCeEEEccCC
Q psy14927        845 ------------TGGIAHLFKSNKVTQLNGH-GKITGPNT---VTVIK--SDGSTEEVKTKNILIATGS  895 (1074)
Q Consensus       845 ------------~~~~~~~l~~~gV~~~~g~-v~~id~~~---~~v~~--~~G~~~~i~~d~lIIATG~  895 (1074)
                                  ...+.+.+.+.||++++++ ++.+..+.   ..|++  .+| ..++.++.+|=|||-
T Consensus        81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g-~~~i~A~~~IDaTG~  148 (428)
T PF12831_consen   81 WVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSG-RKEIRAKVFIDATGD  148 (428)
T ss_dssp             ---------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccc
Confidence                        1124555666799999994 54443322   12223  334 578999999999994

>PRK12370 invasion protein regulator; Provisional

Probab=96.29  E-value=0.036  Score=68.14  Aligned_cols=83  Identities=13%  Similarity=0.038  Sum_probs=58.6

Q ss_pred             CCChHHHHHHHHHHHhccCHHHHHHHHHHhhC--------hhhhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHH
Q psy14927         47 SKDPVLLKWWAQYIESTEDMDLAMKYYEEARD--------YLSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLAR  113 (1074)
Q Consensus        47 ~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d--------~~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~  113 (1074)
                      ++++..|..+|..+...|++++|+.+|.++=.        +..+..+|...|++++|....+.     +.+......++.
T Consensus       335 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~  414 (553)
T PRK12370        335 HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLW  414 (553)
T ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence            56788899999999999999999999998432        34566778899999999888763     334334444444


Q ss_pred             HHHhcCChHHHHHHHH
Q psy14927        114 QYENSGQFDEAIHFYS  129 (1074)
Q Consensus       114 ~~~~~g~~~~Ai~~y~  129 (1074)
                      .+...|++++|++.|.
T Consensus       415 ~~~~~g~~eeA~~~~~  430 (553)
T PRK12370        415 ITYYHTGIDDAIRLGD  430 (553)
T ss_pred             HHHhccCHHHHHHHHH
Confidence            3444556666655443

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=96.29  E-value=0.0015  Score=67.08  Aligned_cols=62  Identities=15%  Similarity=0.074  Sum_probs=43.6

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEe
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLN  861 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~  861 (1074)
                      +|+|+||||+||+||++|++     .+||+.-.+||.++...+....    --+.......|+..||++..
T Consensus        32 DViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~----iVv~~~a~~iL~e~gI~ye~   98 (262)
T COG1635          32 DVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNK----IVVREEADEILDEFGIRYEE   98 (262)
T ss_pred             cEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccce----eeecchHHHHHHHhCCccee
Confidence            39999999999999999999     7899988888777555443322    11223345666667776543

>KOG0292|consensus

Probab=96.27  E-value=0.038  Score=66.73  Aligned_cols=120  Identities=12%  Similarity=0.144  Sum_probs=103.9

Q ss_pred             hcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHH--h-cCChHHHHHH
Q psy14927         35 ENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELAN--A-SGDTAAAYHL  111 (1074)
Q Consensus        35 ~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~--~-~~~~~~~~~l  111 (1074)
                      ++.+.+-++-.+.+++..|..+++-+..+|+-..|+.||.+-++|+.+--+|.-.|+.++..++.+  + .+|..+.++.
T Consensus       657 gnle~ale~akkldd~d~w~rLge~Al~qgn~~IaEm~yQ~~knfekLsfLYliTgn~eKL~Km~~iae~r~D~~~~~qn  736 (1202)
T KOG0292|consen  657 GNLEVALEAAKKLDDKDVWERLGEEALRQGNHQIAEMCYQRTKNFEKLSFLYLITGNLEKLSKMMKIAEIRNDATGQFQN  736 (1202)
T ss_pred             CCHHHHHHHHHhcCcHHHHHHHHHHHHHhcchHHHHHHHHHhhhhhheeEEEEEeCCHHHHHHHHHHHHhhhhhHHHHHH
Confidence            366777788888999999999999999999999999999999999888888999999999988877  3 3455566666


Q ss_pred             HHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhc
Q psy14927        112 ARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSA  157 (1074)
Q Consensus       112 a~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~  157 (1074)
                      |-|   .||+++=+..+..+|...-|--.|..||+.+..-.+..+.
T Consensus       737 alY---l~dv~ervkIl~n~g~~~laylta~~~G~~~~ae~l~ee~  779 (1202)
T KOG0292|consen  737 ALY---LGDVKERVKILENGGQLPLAYLTAAAHGLEDQAEKLGEEL  779 (1202)
T ss_pred             HHH---hccHHHHHHHHHhcCcccHHHHHHhhcCcHHHHHHHHHhh
Confidence            655   5899999999999999999999999999988887776543

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=96.25  E-value=0.025  Score=66.26  Aligned_cols=53  Identities=17%  Similarity=0.355  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHhC-CCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927        950 VAKQFQRILGKQ-GMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus       950 ~~~~~~~~l~~~-gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
                      +.+.+.+.+.+. ++. +.++++.+++.+++++.|++.+      +.++.+|.||.|.|..
T Consensus       113 l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~~~v~~~~------g~~~~a~~vI~AdG~~  166 (388)
T PRK07494        113 LNRALEARVAELPNIT-RFGDEAESVRPREDEVTVTLAD------GTTLSARLVVGADGRN  166 (388)
T ss_pred             HHHHHHHHHhcCCCcE-EECCeeEEEEEcCCeEEEEECC------CCEEEEeEEEEecCCC
Confidence            445566666665 466 7799999998777777776544      3579999999999975

>KOG1346|consensus

Probab=96.22  E-value=0.0056  Score=68.01  Aligned_cols=101  Identities=14%  Similarity=0.133  Sum_probs=67.9

Q ss_pred             chhhhhhccccchHHHHHHHhhhhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEE--ecCC
Q psy14927        794 RQVVLNTLGNCAAVQANYHLATKLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKI--TGPN  870 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~--id~~  870 (1074)
                      ++.|-|||+|+-|...|..|++ -+.....--.++ ++.-..-..-.++.+..+..+.+++.||+++.+ .|..  .+..
T Consensus       347 k~siTIiGnGflgSELacsl~r-k~r~~g~eV~Qv-F~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~  424 (659)
T KOG1346|consen  347 KQSITIIGNGFLGSELACSLKR-KYRNEGVEVHQV-FEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCK  424 (659)
T ss_pred             cceEEEEcCcchhhhHHHHHHH-hhhccCcEEEEe-ecccCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhcc
Confidence            4458899999999999999998 221111000011 110001111223556666778888999999998 3443  3457


Q ss_pred             eEEEEeCCCCeeEEEcCeEEEccCCCCC
Q psy14927        871 TVTVIKSDGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       871 ~~~v~~~~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      ++.+.++||  .++..|.||+|+|..|.
T Consensus       425 nl~lkL~dG--~~l~tD~vVvavG~ePN  450 (659)
T KOG1346|consen  425 NLVLKLSDG--SELRTDLVVVAVGEEPN  450 (659)
T ss_pred             ceEEEecCC--CeeeeeeEEEEecCCCc
Confidence            788889999  88999999999999984

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=96.22  E-value=0.0068  Score=71.06  Aligned_cols=47  Identities=19%  Similarity=0.203  Sum_probs=34.0

Q ss_pred             HHHhhhC-CeEEEee-eEEEec--CCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        849 AHLFKSN-KVTQLNG-HGKITG--PNTVTVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       849 ~~~l~~~-gV~~~~g-~v~~id--~~~~~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                      .+.+... ||+++.+ +++.+.  .+.+.|.+++|  .++++|.||.|.|...
T Consensus       119 ~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g--~~~~a~~vI~AdG~~S  169 (391)
T PRK08020        119 WQALEAHPNVTLRCPASLQALQRDDDGWELTLADG--EEIQAKLVIGADGANS  169 (391)
T ss_pred             HHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCC--CEEEeCEEEEeCCCCc
Confidence            3334444 8999888 566553  44566777777  5799999999999875

>PRK06753 hypothetical protein; Provisional

Probab=96.21  E-value=0.0068  Score=70.58  Aligned_cols=40  Identities=20%  Similarity=0.158  Sum_probs=30.4

Q ss_pred             CeEEEee-eEEEec--CCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        856 KVTQLNG-HGKITG--PNTVTVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       856 gV~~~~g-~v~~id--~~~~~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                      ++++++| +++.++  .+.+.|++++|  .++.+|.||-|.|.+.
T Consensus       110 ~~~i~~~~~v~~i~~~~~~v~v~~~~g--~~~~~~~vigadG~~S  152 (373)
T PRK06753        110 EDAIFTGKEVTKIENETDKVTIHFADG--ESEAFDLCIGADGIHS  152 (373)
T ss_pred             CceEEECCEEEEEEecCCcEEEEECCC--CEEecCEEEECCCcch
Confidence            4567777 566664  45567778888  6789999999999865

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=96.20  E-value=0.032  Score=62.49  Aligned_cols=86  Identities=16%  Similarity=0.175  Sum_probs=64.3

Q ss_pred             hhHHhhcCCcEEEEecCCc---cC-------CCCC-----CHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEe
Q psy14927        922 GSVWGRLGAEVTAIEFMNA---IG-------GMGI-----DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIE  986 (1074)
Q Consensus       922 A~~l~~~G~~Vtlv~~~~~---~~-------~~~~-----~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~  986 (1074)
                      |..|.+.|.+|+|+++.+.   +.       .|.+     +.++...+.+.+++.|+++++ +.+..++..++...+.+.
T Consensus        16 A~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~~~~~v~~~   94 (300)
T TIGR01292        16 AIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVIKVDLSDRPFKVKTG   94 (300)
T ss_pred             HHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEEEEEecCCeeEEEeC
Confidence            5667788999999997651   10       0222     357778888889999999998 789999886665556543


Q ss_pred             eccCCCCceEEEcCEEEEccCCcccCCc
Q psy14927        987 NVKDPTKKEELSCDALLVCVGRRPYTHN 1014 (1074)
Q Consensus       987 ~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 1014 (1074)
                      +      +.++.+|.+|+|+|..|+...
T Consensus        95 ~------~~~~~~d~liiAtG~~~~~~~  116 (300)
T TIGR01292        95 D------GKEYTAKAVIIATGASARKLG  116 (300)
T ss_pred             C------CCEEEeCEEEECCCCCcccCC
Confidence            3      357999999999999887543

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>KOG1155|consensus

Probab=96.19  E-value=0.05  Score=61.75  Aligned_cols=132  Identities=20%  Similarity=0.227  Sum_probs=94.1

Q ss_pred             HHhhhcCCHHHHHHHHHHcCccc---chh----hhHh--hhcHHHHHHHhhc-----CCChHHHHHHHHHHHhccCHHHH
Q psy14927          4 EETMKNGDIDRAIRMFEKAETHQ---QHV----PRML--LENTDKLEKYIIQ-----SKDPVLLKWWAQYIESTEDMDLA   69 (1074)
Q Consensus         4 ~~~~~~g~~~eA~~~Ye~~~~~~---~~~----~~~~--~~~~~~~~~~~~~-----~~~~~l~~~~a~~~e~~~~~~~A   69 (1074)
                      -|..++++...|+.-|..+-...   .++    -++|  +++..-+-=|.++     +.|+.||..+|+-++..+++++|
T Consensus       372 HEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eA  451 (559)
T KOG1155|consen  372 HEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEA  451 (559)
T ss_pred             HHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHH
Confidence            36788999999999999876332   111    1111  2333333233333     78999999999999999999999


Q ss_pred             HHHHHHh---hCh--hhhhhH---hhccCCHHHHHHHHHh----c--------CChHHHHHHHHHHHhcCChHHHHHHHH
Q psy14927         70 MKYYEEA---RDY--LSMVRV---LCFLQDFSRAAELANA----S--------GDTAAAYHLARQYENSGQFDEAIHFYS  129 (1074)
Q Consensus        70 ~~~y~~a---~d~--~~~vr~---l~~~~~~~~a~~i~~~----~--------~~~~~~~~la~~~~~~g~~~~Ai~~y~  129 (1074)
                      .+||.+|   ||.  ...+|+   +.++++.++|......    .        ....+...||++|.+.+++++|-.+-.
T Consensus       452 iKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~  531 (559)
T KOG1155|consen  452 IKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT  531 (559)
T ss_pred             HHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence            9999884   666  344454   7888998888775431    1        123466789999999999999988877


Q ss_pred             HhCChH
Q psy14927        130 VAGSCG  135 (1074)
Q Consensus       130 ~a~~~~  135 (1074)
                      +.-+.+
T Consensus       532 ~~~~~~  537 (559)
T KOG1155|consen  532 LVLKGE  537 (559)
T ss_pred             HHhcCC
Confidence            777665

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=96.19  E-value=0.013  Score=68.38  Aligned_cols=33  Identities=27%  Similarity=0.319  Sum_probs=30.2

Q ss_pred             hhhhhccccchHHHHHHHhh-------hhhhhcccccccc
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVKL  828 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~~  828 (1074)
                      +|+|||||.+||+||++|.+       ++||+.+..||.+
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l   41 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLL   41 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceE
Confidence            48999999999999999999       7999999998865

>PRK07045 putative monooxygenase; Reviewed

Probab=96.15  E-value=0.042  Score=64.37  Aligned_cols=54  Identities=17%  Similarity=0.308  Sum_probs=38.4

Q ss_pred             HHHHHHHHHH-hCCCEEEeCceEEEEEecCCeE--EEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927        950 VAKQFQRILG-KQGMQFKLGTKVTGASKSGDNI--TVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus       950 ~~~~~~~~l~-~~gV~i~~~~~v~~i~~~~~~~--~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
                      +.+.+.+.+. ..|++++++++++.++.++++.  .|++.+      ++++.+|.||-|.|..
T Consensus       108 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~------g~~~~~~~vIgADG~~  164 (388)
T PRK07045        108 LRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSD------GERVAPTVLVGADGAR  164 (388)
T ss_pred             HHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCC------CCEEECCEEEECCCCC
Confidence            4455556654 4689999999999998765553  455433      3578999999888754

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=96.14  E-value=0.16  Score=63.37  Aligned_cols=151  Identities=11%  Similarity=0.057  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHHHHhhhCccchhhHHHHHHHhh--hhHHHHHHHHHHHHhhhcHHHHHHHHHHh-----hCHHHH---HH
Q psy14927        589 SAAVKALTGGIAHLFKSNKALKIITKQIILILI--IYRVLLKWWAQYIESTEDMDLAMKYYEEA-----RDYLSM---VR  658 (1074)
Q Consensus       589 ~~~i~~l~~~~~~~l~~~~i~~~~~~~~~~~~~--~~~~l~~~~a~~~e~~~~~~~A~~~y~~a-----g~~~~a---i~  658 (1074)
                      +.+..++...++..-.-.....+++++.++.|-  .+++.+.-.|......|++++|+.++..+     +...-.   ..
T Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~  128 (694)
T PRK15179         49 RELLQQARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLR  128 (694)
T ss_pred             HHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence            334444444444333333334457777775543  35789999999999999999999999988     333333   34


Q ss_pred             HHHHcCCHHHHHHHHH-----hcCCcHHHHHHHHHHHhcCCHHHHHHHHHHcCCHHHHHHHhccHHHHHHHHHHhCCccc
Q psy14927        659 VLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCGQLDAVESIASELNVQSD  733 (1074)
Q Consensus       659 ~~~~~~~~~~a~~v~~-----~~~~~~~~~~~A~~~~~~g~~~~A~~~~~kag~~~~Av~ma~~w~~a~~~A~~~~~~~~  733 (1074)
                      .....+.+++|+..++     ..++.+.....|..|.+.|+|++|+.+|-++-                  + .+  +..
T Consensus       129 ~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~------------------~-~~--p~~  187 (694)
T PRK15179        129 GVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLS------------------R-QH--PEF  187 (694)
T ss_pred             HHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHH------------------h-cC--CCc
Confidence            4789999999998884     23334444488999999999999999998762                  2 22  355


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy14927        734 QDLILKCASYFARREHHDRAVQMYAIA  760 (1074)
Q Consensus       734 ~~~~~~~a~~~~~~~~~~~Ai~~y~~a  760 (1074)
                      ++.++++|..|-..|+.+.|..+|+++
T Consensus       188 ~~~~~~~a~~l~~~G~~~~A~~~~~~a  214 (694)
T PRK15179        188 ENGYVGWAQSLTRRGALWRARDVLQAG  214 (694)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            588899999999999999999999988

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=96.11  E-value=0.01  Score=71.93  Aligned_cols=46  Identities=20%  Similarity=0.172  Sum_probs=34.3

Q ss_pred             CCCeeeCCCCC------CCCCCEEEecccCCCC--------CcHHHHHHHHHHHHHHhhC
Q psy14927       1027 KGRVPVNSRFQ------TVIPNIFAIGDCIHGP--------MLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus      1027 ~G~I~Vd~~~~------ts~~~IyAiGD~~~~~--------~~~~~A~~~G~~aA~~I~~ 1072 (1074)
                      .|.|.+|...|      +.+||+||+|.++++.        .....|+-.|++|+.+++.
T Consensus       442 ~GGl~in~~~qVld~~g~pI~GLYAaGe~~gg~~g~~~~~G~~l~~~~~~GriAg~~aa~  501 (506)
T PRK06481        442 MGGVKINTNTEVLKKDGSPITGLYAAGEVTGGLHGENRIGGNSVADIIIFGRQAGTQSAE  501 (506)
T ss_pred             ccCeEECCCceEEcCCCCEeCCeeeceeccccCCCCCCCchhhHHHHHHHHHHHHHHHHH
Confidence            46677777766      4799999999987531        2356788899999998764

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=96.11  E-value=0.19  Score=54.93  Aligned_cols=127  Identities=14%  Similarity=0.157  Sum_probs=77.4

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHhhC--------HHHHHHHHHHcCCHHHHHHHHH---hcCCcHHHHHHHHHHH-----
Q psy14927        627 LKWWAQYIESTEDMDLAMKYYEEARD--------YLSMVRVLCFLQDFSRAAELAN---ASGDTAAAYHLARQYE-----  690 (1074)
Q Consensus       627 ~~~~a~~~e~~~~~~~A~~~y~~ag~--------~~~ai~~~~~~~~~~~a~~v~~---~~~~~~~~~~~A~~~~-----  690 (1074)
                      ....|+=....|=+|-||+.|..=-|        ...-+.+|..-.+|++|+++++   ..++.....+||.++.     
T Consensus       110 l~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~  189 (389)
T COG2956         110 LQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQ  189 (389)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHH
Confidence            44567777788899999999987644        3344567889999999999996   4455555555555554     


Q ss_pred             --hcCCHHHHHHHHHHcCC-----HHHHHHH------hccHHHHHHH---HHHhCCcccHHHHHHHHHHHHHcCCHHHH
Q psy14927        691 --NSGQFDEAIHFYSVAGS-----CGNAVRL------CGQLDAVESI---ASELNVQSDQDLILKCASYFARREHHDRA  753 (1074)
Q Consensus       691 --~~g~~~~A~~~~~kag~-----~~~Av~m------a~~w~~a~~~---A~~~~~~~~~~~~~~~a~~~~~~~~~~~A  753 (1074)
                        ...+++.|...+.||-.     ..--|.+      -+++..|.+.   +.+++|+-.++++-.+..-+...|++...
T Consensus       190 ~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~  268 (389)
T COG2956         190 ALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEG  268 (389)
T ss_pred             HhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHH
Confidence              45678888888888722     2222222      2555555433   33344555555554444443344444333

>KOG0547|consensus

Probab=96.07  E-value=0.054  Score=61.85  Aligned_cols=143  Identities=21%  Similarity=0.266  Sum_probs=106.8

Q ss_pred             cCCHHHHHHHHHHcCcccchhhhHhhh---------cHHHHHHHhh----c-CCChHHHHHHHHHHHhccCHHHHHHHHH
Q psy14927          9 NGDIDRAIRMFEKAETHQQHVPRMLLE---------NTDKLEKYII----Q-SKDPVLLKWWAQYIESTEDMDLAMKYYE   74 (1074)
Q Consensus         9 ~g~~~eA~~~Ye~~~~~~~~~~~~~~~---------~~~~~~~~~~----~-~~~~~l~~~~a~~~e~~~~~~~A~~~y~   74 (1074)
                      .++|++|+.=|+|+-..+.+-.--|++         .+........    + ++.|+....+|+.+..+++|+.|.++|-
T Consensus       407 L~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD  486 (606)
T KOG0547|consen  407 LQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYD  486 (606)
T ss_pred             HHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence            357899999999998887665333321         2222222222    2 7889999999999999999999999999


Q ss_pred             HhhChhhh---------------hhHhhccCCHHHHHHHHHh-----cCChHHHHHHHHHHHhcCChHHHHHHHHHhCCh
Q psy14927         75 EARDYLSM---------------VRVLCFLQDFSRAAELANA-----SGDTAAAYHLARQYENSGQFDEAIHFYSVAGSC  134 (1074)
Q Consensus        75 ~a~d~~~~---------------vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~  134 (1074)
                      .|-+....               +-++.-.++++.|.++.+.     +++.-+---||.+-.++|++++||++|      
T Consensus       487 ~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielF------  560 (606)
T KOG0547|consen  487 KAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELF------  560 (606)
T ss_pred             HHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHH------
Confidence            99887654               1123346789999999884     445556668999999999999999996      


Q ss_pred             HHHHHHHHHhCchHHHHHHhhhc
Q psy14927        135 GNAVRLCKEQALDDQLWNLALSA  157 (1074)
Q Consensus       135 ~~A~~la~~~~~~~~~~~l~~~~  157 (1074)
                      ++++.||+....|-+..+++.-+
T Consensus       561 Eksa~lArt~~E~~~a~s~aeAA  583 (606)
T KOG0547|consen  561 EKSAQLARTESEMVHAYSLAEAA  583 (606)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHH
Confidence            67789999986666667666443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=96.05  E-value=0.073  Score=52.87  Aligned_cols=116  Identities=21%  Similarity=0.173  Sum_probs=81.1

Q ss_pred             CCHHHHHHHHHHcCcccchhhhHhhhcHH----HHHHHhhcCC-C---hHHHHHHHHHHHhccCHHHHHHHHHHhhCh--
Q psy14927         10 GDIDRAIRMFEKAETHQQHVPRMLLENTD----KLEKYIIQSK-D---PVLLKWWAQYIESTEDMDLAMKYYEEARDY--   79 (1074)
Q Consensus        10 g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~---~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~--   79 (1074)
                      .+.++|...|+++...-      -.+++.    .++.++.+.. +   ..-....|+.+...|++++|...|..+-+-  
T Consensus         6 ~~~~~a~~~y~~~~~~~------~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~   79 (145)
T PF09976_consen    6 QQAEQASALYEQALQAL------QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAP   79 (145)
T ss_pred             HHHHHHHHHHHHHHHHH------HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC
Confidence            34566777777665221      112343    2444555532 3   234555699999999999999999886543  


Q ss_pred             ---------hhhhhHhhccCCHHHHHHHHHhcC----ChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927         80 ---------LSMVRVLCFLQDFSRAAELANASG----DTAAAYHLARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus        80 ---------~~~vr~l~~~~~~~~a~~i~~~~~----~~~~~~~la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                               ..+.+++...|++++|....+...    ........|..|...|++++|+..|.++
T Consensus        80 d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   80 DPELKPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence                     235666888999999999987432    2235668899999999999999999875

>PRK06175 L-aspartate oxidase; Provisional

Probab=96.04  E-value=0.059  Score=64.01  Aligned_cols=59  Identities=10%  Similarity=0.145  Sum_probs=40.9

Q ss_pred             CHHHHHHHHHHHHh-CCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927        947 DGEVAKQFQRILGK-QGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus       947 ~~~~~~~~~~~l~~-~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
                      .+.+...+.+.+++ .||++++++.+..+..+++. ..+...+   +++...+.++.||+|+|-
T Consensus       127 g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~---~g~~~~i~Ak~VILAtGG  187 (433)
T PRK06175        127 GKKVEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLK---DNKQINIYSKVTILATGG  187 (433)
T ss_pred             hHHHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEE---CCcEEEEEcCeEEEccCc
Confidence            34566667666664 59999999999998754443 3333333   243457899999999985

>KOG1336|consensus

Probab=95.98  E-value=0.012  Score=67.39  Aligned_cols=90  Identities=10%  Similarity=0.043  Sum_probs=67.1

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeE-EEec-
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHG-KITG-  868 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v-~~id-  868 (1074)
                      +||++|||+.|+.+|-.+..     |++...+.+-           .+-+...+...+..++.+.||+|+.+++ ..++ 
T Consensus       215 ~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~-----------~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~  283 (478)
T KOG1336|consen  215 KVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLL-----------PRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEG  283 (478)
T ss_pred             eEEEECchHHHHHHHHHHHhcCceEEEEccCccch-----------hhhhhHHHHHHHHHHHHhcCeEEEEecceeeccc
Confidence            49999999999999988877     4444333221           1123356666788999999999999963 3443 


Q ss_pred             ---CCeEEEEeCCCCeeEEEcCeEEEccCCCCC
Q psy14927        869 ---PNTVTVIKSDGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       869 ---~~~~~v~~~~G~~~~i~~d~lIIATG~~p~  898 (1074)
                         .+...|.+.+|  .++.+|-||+.+|++|.
T Consensus       284 ~~~Gev~~V~l~dg--~~l~adlvv~GiG~~p~  314 (478)
T KOG1336|consen  284 NSDGEVSEVKLKDG--KTLEADLVVVGIGIKPN  314 (478)
T ss_pred             CCCCcEEEEEeccC--CEeccCeEEEeeccccc
Confidence               34567788898  89999999999999984

>TIGR02731 phytoene_desat phytoene desaturase

Probab=95.97  E-value=0.045  Score=65.54  Aligned_cols=60  Identities=10%  Similarity=0.212  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe--EEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927        948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN--ITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus       948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
                      ..+.+.+.+.+++.|++|++++.|++|...+++  +.|++.+.. .++..++.+|.||++++.
T Consensus       213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~-~~~~~~~~a~~VI~a~p~  274 (453)
T TIGR02731       213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGE-GQRRFEVTADAYVSAMPV  274 (453)
T ss_pred             HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCC-CCceeEEECCEEEEcCCH
Confidence            456677788888899999999999999754333  345554411 011126899999999864

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=95.95  E-value=0.008  Score=70.19  Aligned_cols=48  Identities=15%  Similarity=0.189  Sum_probs=35.4

Q ss_pred             HHHHhhh-CCeEEEee-eEEEec--CCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        848 IAHLFKS-NKVTQLNG-HGKITG--PNTVTVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       848 ~~~~l~~-~gV~~~~g-~v~~id--~~~~~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                      +.+.+.. .|++++.+ +++.+.  .+.+++++++|  .++.+|.||.|.|...
T Consensus       111 L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g--~~~~ad~vV~AdG~~S  162 (382)
T TIGR01984       111 LLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNG--QQLRAKLLIAADGANS  162 (382)
T ss_pred             HHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCC--CEEEeeEEEEecCCCh
Confidence            3344455 49999987 577663  45677777777  5799999999999864

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PLN02661 Putative thiazole synthesis

Probab=95.93  E-value=0.01  Score=67.05  Aligned_cols=32  Identities=19%  Similarity=0.227  Sum_probs=26.7

Q ss_pred             hhhhhhccccchHHHHHHHhh------hhhhhcccccc
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT------KLFTQAGDKGV  826 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~------~l~e~~~~~g~  826 (1074)
                      .+|+|||||++|+.||+.|++      +++|+....|+
T Consensus        93 ~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GG  130 (357)
T PLN02661         93 TDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGG  130 (357)
T ss_pred             CCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccc
Confidence            359999999999999999985      67888766554

>PRK04841 transcriptional regulator MalT; Provisional

Probab=95.92  E-value=6  Score=51.91  Aligned_cols=133  Identities=18%  Similarity=0.126  Sum_probs=83.5

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchhhhHhh---------hcHHHHHHHhhcC------CChHHHHHHHHHHHhccCHHHHH
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHVPRMLL---------ENTDKLEKYIIQS------KDPVLLKWWAQYIESTEDMDLAM   70 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~---------~~~~~~~~~~~~~------~~~~l~~~~a~~~e~~~~~~~A~   70 (1074)
                      +...|++.+|+.++..++..+ .+.+++.         +.+..+..++...      .+|.+...++-.+...|++++|.
T Consensus       351 ~~~~g~~~~Al~~a~~a~d~~-~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~  429 (903)
T PRK04841        351 WLAQGFPSEAIHHALAAGDAQ-LLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVN  429 (903)
T ss_pred             HHHCCCHHHHHHHHHHCCCHH-HHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHH
Confidence            567889999999999988775 4444432         2344455555442      34555555666667788999988


Q ss_pred             HHHHHhhChhh-----------------hhhHhhccCCHHHHHHHHHhc------CCh----HHHHHHHHHHHhcCChHH
Q psy14927         71 KYYEEARDYLS-----------------MVRVLCFLQDFSRAAELANAS------GDT----AAAYHLARQYENSGQFDE  123 (1074)
Q Consensus        71 ~~y~~a~d~~~-----------------~vr~l~~~~~~~~a~~i~~~~------~~~----~~~~~la~~~~~~g~~~~  123 (1074)
                      .++..+.+...                 ...++...|++++|....+..      ++.    .+...+|..+...|++++
T Consensus       430 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~  509 (903)
T PRK04841        430 TLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELAR  509 (903)
T ss_pred             HHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHH
Confidence            88876533210                 012345688888887776631      111    133466777778888888


Q ss_pred             HHHHHHHhCChHHHHHHHHHhC
Q psy14927        124 AIHFYSVAGSCGNAVRLCKEQA  145 (1074)
Q Consensus       124 Ai~~y~~a~~~~~A~~la~~~~  145 (1074)
                      |..+|      .+|+++++..+
T Consensus       510 A~~~~------~~al~~~~~~g  525 (903)
T PRK04841        510 ALAMM------QQTEQMARQHD  525 (903)
T ss_pred             HHHHH------HHHHHHHhhhc
Confidence            88875      45555666554

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=95.91  E-value=0.051  Score=65.34  Aligned_cols=59  Identities=12%  Similarity=0.241  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927        948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus       948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
                      ..+...+.+.+++.||+++.++.++++..+++. +.|...+.  +++...+.++.||+|+|-
T Consensus       131 ~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~--~g~~~~i~a~~VIlAtGg  190 (466)
T PRK08274        131 KALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSA--AGGAERIRAKAVVLAAGG  190 (466)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEcc--CCceEEEECCEEEECCCC
Confidence            456777778888999999999999998865444 33444321  355567899999999984

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=95.91  E-value=0.93  Score=54.60  Aligned_cols=177  Identities=17%  Similarity=0.198  Sum_probs=91.6

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHcc-CChhHHHHHHHHhCCh
Q psy14927        109 YHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLET-IEPDKAVLLYHKAGAL  187 (1074)
Q Consensus       109 ~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~-~~~~~A~~ly~kaG~~  187 (1074)
                      +.+|++|-..|++++|+++.      ++||    +|          ..+.++.+.-=|+.|.. |++.+|....-.|-..
T Consensus       198 ~~lAqhyd~~g~~~~Al~~I------d~aI----~h----------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L  257 (517)
T PF12569_consen  198 YFLAQHYDYLGDYEKALEYI------DKAI----EH----------TPTLVELYMTKARILKHAGDLKEAAEAMDEAREL  257 (517)
T ss_pred             HHHHHHHHHhCCHHHHHHHH------HHHH----hc----------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence            45666666666666666541      2222    22          12223555555555554 5566665555555555


Q ss_pred             HHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHccCC
Q psy14927        188 HKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKA  267 (1074)
Q Consensus       188 ~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~  267 (1074)
                      ..|=+.+-.            ++.|.+++.|++++++..++..-..+.           +...+..+|            
T Consensus       258 D~~DRyiNs------------K~aKy~LRa~~~e~A~~~~~~Ftr~~~-----------~~~~~L~~m------------  302 (517)
T PF12569_consen  258 DLADRYINS------------KCAKYLLRAGRIEEAEKTASLFTREDV-----------DPLSNLNDM------------  302 (517)
T ss_pred             ChhhHHHHH------------HHHHHHHHCCCHHHHHHHHHhhcCCCC-----------CcccCHHHH------------
Confidence            444333222            577777888877776655543322111           111111221            


Q ss_pred             HHHHHHHHHHHHhHHHHhhcCHHHHHHHHHHHHHHHHhcCCCch---HHHHHHHHHHHHHHHHh-h-cCChHHHhhHHHH
Q psy14927        268 PHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMY---ETLKSSVVEKLAEVEID-E-FGNYEKGLGALNE  342 (1074)
Q Consensus       268 ~~~aa~~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~-~-~~~~~~a~~~~~~  342 (1074)
                        +..-|-..+|+-- .--|+|..|++.+....+++..-...+-   .=-.+.++   -+.||. + +.|..-.-.+|.|
T Consensus       303 --Qc~Wf~~e~a~a~-~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t---~r~Y~~~L~~ed~l~~~~~y~r  376 (517)
T PF12569_consen  303 --QCMWFETECAEAY-LRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMT---LRAYVDMLRWEDKLRSHPFYRR  376 (517)
T ss_pred             --HHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhcc---HHHHHHHHHHHHHhhcCHHHHH
Confidence              1234555666665 6678888888888888888876443221   11111121   233444 1 3555555556777


Q ss_pred             HHHH
Q psy14927        343 AKRC  346 (1074)
Q Consensus       343 ~~~~  346 (1074)
                      ++..
T Consensus       377 aa~~  380 (517)
T PF12569_consen  377 AAKG  380 (517)
T ss_pred             HHHH
Confidence            7655

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>TIGR02734 crtI_fam phytoene desaturase

Probab=95.88  E-value=0.023  Score=69.11  Aligned_cols=55  Identities=18%  Similarity=0.352  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927        948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus       948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
                      ..+.+.+.+.+++.|++|+.++.|.+|..+++. +.|++.+      +.++.+|.||++++.
T Consensus       219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~------g~~~~ad~VI~a~~~  274 (502)
T TIGR02734       219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLAD------GERLDADAVVSNADL  274 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECC------CCEEECCEEEECCcH
Confidence            456777888889999999999999999876554 4455443      457899999998875

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=95.86  E-value=0.015  Score=68.49  Aligned_cols=41  Identities=20%  Similarity=0.261  Sum_probs=32.3

Q ss_pred             CCeEEEee-eEEEe--cCCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        855 NKVTQLNG-HGKIT--GPNTVTVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       855 ~gV~~~~g-~v~~i--d~~~~~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                      .||+++.+ +++.+  +.+.+.|++++|  .++++|.||.|.|...
T Consensus       125 ~~v~v~~~~~v~~i~~~~~~~~v~~~~g--~~~~a~lvIgADG~~S  168 (405)
T PRK08850        125 DNVTLLMPARCQSIAVGESEAWLTLDNG--QALTAKLVVGADGANS  168 (405)
T ss_pred             CCeEEEcCCeeEEEEeeCCeEEEEECCC--CEEEeCEEEEeCCCCC
Confidence            47999888 56666  345667778888  6899999999999865

>TIGR00540 hemY_coli hemY protein

Probab=95.82  E-value=1.1  Score=52.84  Aligned_cols=42  Identities=10%  Similarity=0.081  Sum_probs=29.1

Q ss_pred             HHHHHHHHh---cCCCCCChhHHHHHHHHHHccCCHHHHHHHHHH
Q psy14927        236 YVMAANYLQ---SSDWKSQPELLKSIISFYSKGKAPHLLANFYVS  277 (1074)
Q Consensus       236 ~~~aa~yl~---~~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~  277 (1074)
                      |..|-+||+   ....+.+|....++...|.+.|..++|..+|..
T Consensus       351 ~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~  395 (409)
T TIGR00540       351 FIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD  395 (409)
T ss_pred             HHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            455555665   233456667777888888888888888877664

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK06185 hypothetical protein; Provisional

Probab=95.80  E-value=0.13  Score=60.55  Aligned_cols=57  Identities=19%  Similarity=0.359  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHh-CCCEEEeCceEEEEEecCCeE-EEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927        950 VAKQFQRILGK-QGMQFKLGTKVTGASKSGDNI-TVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus       950 ~~~~~~~~l~~-~gV~i~~~~~v~~i~~~~~~~-~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
                      +...+.+.+.+ .||+++.++++.++..+++.+ .|.+..   ++...++.+|.||.|.|..
T Consensus       110 l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~---~~g~~~i~a~~vI~AdG~~  168 (407)
T PRK06185        110 FLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRART---PDGPGEIRADLVVGADGRH  168 (407)
T ss_pred             HHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEc---CCCcEEEEeCEEEECCCCc
Confidence            44455555555 489999999999998765553 344443   1222579999999999865

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=95.80  E-value=0.019  Score=67.23  Aligned_cols=41  Identities=17%  Similarity=0.151  Sum_probs=32.9

Q ss_pred             CCeEEEee-eEEEe--cCCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        855 NKVTQLNG-HGKIT--GPNTVTVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       855 ~gV~~~~g-~v~~i--d~~~~~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                      .|++++.+ +++.+  +.+.+++++++|  .++++|.||.|+|..+
T Consensus       124 ~~i~i~~~~~v~~~~~~~~~~~v~~~~g--~~~~~~lvIgADG~~S  167 (384)
T PRK08849        124 PNLTLMCPEKLADLEFSAEGNRVTLESG--AEIEAKWVIGADGANS  167 (384)
T ss_pred             CCeEEECCCceeEEEEcCCeEEEEECCC--CEEEeeEEEEecCCCc
Confidence            47899888 46655  356678888888  6899999999999975

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=95.80  E-value=0.03  Score=49.79  Aligned_cols=84  Identities=21%  Similarity=0.277  Sum_probs=53.6

Q ss_pred             hcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhh
Q psy14927          8 KNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLC   87 (1074)
Q Consensus         8 ~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~   87 (1074)
                      ++|++++|+.+|++.-..+                  +...++..|.++|+.+-..|+|+.|.+++.+ ..+        
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~------------------~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--------   53 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELD------------------PTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--------   53 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHH------------------CGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--------
T ss_pred             CCccHHHHHHHHHHHHHHC------------------CCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--------
Confidence            3678888888888776333                  1100234555567777666666666666544 111        


Q ss_pred             ccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927         88 FLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus        88 ~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                                   ...+....+.+|+.|.+.|++++||+.|.++
T Consensus        54 -------------~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   54 -------------DPSNPDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             -------------HHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             -------------CCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence                         2234567778899999999999999998764

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=95.79  E-value=1.7  Score=49.90  Aligned_cols=127  Identities=18%  Similarity=0.200  Sum_probs=85.2

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchhh---h---Hh--h----hcHHHHHHHhhc--C---CChHHHHHHHHHHHhccCHHH
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHVP---R---ML--L----ENTDKLEKYIIQ--S---KDPVLLKWWAQYIESTEDMDL   68 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~~---~---~~--~----~~~~~~~~~~~~--~---~~~~l~~~~a~~~e~~~~~~~   68 (1074)
                      +-..|++++|..+|+++-.....-+   .   .+  +    +....+.+.+..  .   .....+..+|..++..|+++.
T Consensus        53 ~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~  132 (355)
T cd05804          53 AWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDR  132 (355)
T ss_pred             HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHH
Confidence            3457999999999998653321111   1   11  1    222333333322  2   223355566889999999999


Q ss_pred             HHHHHHHhhC--------hhhhhhHhhccCCHHHHHHHHHhcC-----ChH----HHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927         69 AMKYYEEARD--------YLSMVRVLCFLQDFSRAAELANASG-----DTA----AAYHLARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus        69 A~~~y~~a~d--------~~~~vr~l~~~~~~~~a~~i~~~~~-----~~~----~~~~la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                      |.+.|.++-.        +..+..++...|++++|....+..-     +..    ...++|+.+..+|++++|++.|.++
T Consensus       133 A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~  212 (355)
T cd05804         133 AEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTH  212 (355)
T ss_pred             HHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            9999998643        2456677889999999999876311     111    2347999999999999999999887


Q ss_pred             C
Q psy14927        132 G  132 (1074)
Q Consensus       132 ~  132 (1074)
                      .
T Consensus       213 ~  213 (355)
T cd05804         213 I  213 (355)
T ss_pred             h
Confidence            3

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=95.77  E-value=0.08  Score=55.65  Aligned_cols=85  Identities=16%  Similarity=0.220  Sum_probs=69.9

Q ss_pred             CCChHHHHHHHHHHHhccCHHHHHHHHHHhhCh--------hhhhhHh-hccCC--HHHHHHHHH-----hcCChHHHHH
Q psy14927         47 SKDPVLLKWWAQYIESTEDMDLAMKYYEEARDY--------LSMVRVL-CFLQD--FSRAAELAN-----ASGDTAAAYH  110 (1074)
Q Consensus        47 ~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~--------~~~vr~l-~~~~~--~~~a~~i~~-----~~~~~~~~~~  110 (1074)
                      +++...|..+|..+...|++++|..+|.++-..        .....+| ...|+  .++|.++.+     ++++..+.+.
T Consensus        70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~  149 (198)
T PRK10370         70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALML  149 (198)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHH
Confidence            688999999999999999999999999997654        2344443 45566  478888776     4678889999


Q ss_pred             HHHHHHhcCChHHHHHHHHHh
Q psy14927        111 LARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus       111 la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                      +|..+.+.|++++|+.+|.++
T Consensus       150 LA~~~~~~g~~~~Ai~~~~~a  170 (198)
T PRK10370        150 LASDAFMQADYAQAIELWQKV  170 (198)
T ss_pred             HHHHHHHcCCHHHHHHHHHHH
Confidence            999999999999999987765

>PLN02985 squalene monooxygenase

Probab=95.74  E-value=0.066  Score=64.90  Aligned_cols=29  Identities=14%  Similarity=0.098  Sum_probs=25.1

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhcc
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAG  822 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~  822 (1074)
                      ..+|+|||||++|+++|+.|++     +++|+..
T Consensus        43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~   76 (514)
T PLN02985         43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL   76 (514)
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence            4569999999999999999998     6777754

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=95.71  E-value=0.14  Score=63.74  Aligned_cols=129  Identities=12%  Similarity=0.092  Sum_probs=101.9

Q ss_pred             cHHHHHHHhhc-CCChHHHHHHHHHHHhccCHHHHHHHHHHhhCh--------hhhhhHhhccCCHHHHHHHHH-----h
Q psy14927         36 NTDKLEKYIIQ-SKDPVLLKWWAQYIESTEDMDLAMKYYEEARDY--------LSMVRVLCFLQDFSRAAELAN-----A  101 (1074)
Q Consensus        36 ~~~~~~~~~~~-~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~--------~~~vr~l~~~~~~~~a~~i~~-----~  101 (1074)
                      +..++..|+.. .+++..+..+|+..++.|.+++|++.+.++=.+        ...+++|.+++.+++|...++     +
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~  150 (694)
T PRK15179         71 ALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG  150 (694)
T ss_pred             hHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC
Confidence            44566666666 466999999999999999999999999986443        456677999999999988877     4


Q ss_pred             cCChHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHcc-CChhHHHHH
Q psy14927        102 SGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLET-IEPDKAVLL  180 (1074)
Q Consensus       102 ~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~-~~~~~A~~l  180 (1074)
                      +.+..+.+.+|..+.+.|.+++|+..|.++-.         .+           ...+...+..|.-+.+ |+.+.|+..
T Consensus       151 p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~---------~~-----------p~~~~~~~~~a~~l~~~G~~~~A~~~  210 (694)
T PRK15179        151 SSSAREILLEAKSWDEIGQSEQADACFERLSR---------QH-----------PEFENGYVGWAQSLTRRGALWRARDV  210 (694)
T ss_pred             CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh---------cC-----------CCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence            67778899999999999999999999875421         11           1223455678887777 789999999


Q ss_pred             HHHh
Q psy14927        181 YHKA  184 (1074)
Q Consensus       181 y~ka  184 (1074)
                      |.+|
T Consensus       211 ~~~a  214 (694)
T PRK15179        211 LQAG  214 (694)
T ss_pred             HHHH
Confidence            9887

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=95.70  E-value=0.07  Score=64.00  Aligned_cols=54  Identities=15%  Similarity=0.335  Sum_probs=40.2

Q ss_pred             CHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927        947 DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus       947 ~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
                      +..+...+.+.+++.||+|+.++.|..++.. +.+.|++.+      + ++.+|.||+|+|.
T Consensus       182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~-~~~~v~t~~------g-~v~A~~VV~Atga  235 (460)
T TIGR03329       182 PGLLVRGLRRVALELGVEIHENTPMTGLEEG-QPAVVRTPD------G-QVTADKVVLALNA  235 (460)
T ss_pred             HHHHHHHHHHHHHHcCCEEECCCeEEEEeeC-CceEEEeCC------c-EEECCEEEEcccc
Confidence            3456677778888999999999999999753 334444322      2 5899999999884

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PLN02487 zeta-carotene desaturase

Probab=95.66  E-value=0.054  Score=66.02  Aligned_cols=60  Identities=17%  Similarity=0.217  Sum_probs=44.6

Q ss_pred             CCHHHHHHHHHHHHhCCCEEEeCceEEEEEecC--Ce----EEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927        946 IDGEVAKQFQRILGKQGMQFKLGTKVTGASKSG--DN----ITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus       946 ~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~--~~----~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
                      +...+.+.+.+.+++.|++|++++.|.+|..++  ++    ..|++.+   ++++..+.+|.||++++.
T Consensus       293 ~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~---~~~~~~~~aD~VV~A~p~  358 (569)
T PLN02487        293 PDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSK---ATEKEIVKADAYVAACDV  358 (569)
T ss_pred             chHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEec---CCCceEEECCEEEECCCH
Confidence            334578888999999999999999999998752  22    3445432   134567899999999875

>PRK10262 thioredoxin reductase; Provisional

Probab=95.66  E-value=0.024  Score=64.59  Aligned_cols=90  Identities=16%  Similarity=0.145  Sum_probs=60.1

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEec
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITG  868 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id  868 (1074)
                      ++|+|||||+.|+..|..+++     ++++..+..         ...     ..+...+.+.++..||+++.+ .++.++
T Consensus       147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~---------~~~-----~~~~~~~~~~l~~~gV~i~~~~~v~~v~  212 (321)
T PRK10262        147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF---------RAE-----KILIKRLMDKVENGNIILHTNRTLEEVT  212 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc---------CCC-----HHHHHHHHhhccCCCeEEEeCCEEEEEE
Confidence            349999999999999999987     444443321         000     112233566677889999998 577776


Q ss_pred             CCe---EEEEeCC----CCeeEEEcCeEEEccCCCCC
Q psy14927        869 PNT---VTVIKSD----GSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       869 ~~~---~~v~~~~----G~~~~i~~d~lIIATG~~p~  898 (1074)
                      .+.   ..|++.+    +...++.+|.||+++|.+|.
T Consensus       213 ~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~  249 (321)
T PRK10262        213 GDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPN  249 (321)
T ss_pred             cCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccC
Confidence            542   1233332    22357999999999999984

>PRK07121 hypothetical protein; Validated

Probab=95.62  E-value=0.061  Score=65.11  Aligned_cols=59  Identities=12%  Similarity=0.202  Sum_probs=44.0

Q ss_pred             CHHHHHHHHHHHHhCCCEEEeCceEEEEEecCC--eEEEEEeeccCCCCceEEEc-CEEEEccCC
Q psy14927        947 DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGD--NITVTIENVKDPTKKEELSC-DALLVCVGR 1008 (1074)
Q Consensus       947 ~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~--~~~v~~~~~~~~g~~~~i~~-D~vi~a~G~ 1008 (1074)
                      ...+...+.+.+++.||++++++.++++..+++  ...|...+   +++...+.+ +.||+|+|-
T Consensus       176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~---~~~~~~i~a~k~VVlAtGg  237 (492)
T PRK07121        176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARR---YGETVAIRARKGVVLAAGG  237 (492)
T ss_pred             hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEe---CCcEEEEEeCCEEEECCCC
Confidence            345677778888899999999999999876432  24455544   344567888 999999984

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=95.61  E-value=0.021  Score=67.56  Aligned_cols=40  Identities=20%  Similarity=0.229  Sum_probs=29.5

Q ss_pred             CeEEEee-eEEEec--CCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        856 KVTQLNG-HGKITG--PNTVTVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       856 gV~~~~g-~v~~id--~~~~~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                      ++.+..+ +|+.++  .+.+++++++|  .++.+|.||.|.|...
T Consensus       117 ~~~v~~~~~v~~i~~~~~~~~v~~~~g--~~~~ad~vVgADG~~S  159 (414)
T TIGR03219       117 EGIASFGKRATQIEEQAEEVQVLFTDG--TEYRCDLLIGADGIKS  159 (414)
T ss_pred             CceEEcCCEEEEEEecCCcEEEEEcCC--CEEEeeEEEECCCccH
Confidence            4456666 566654  45577777888  5799999999999875

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=95.60  E-value=0.018  Score=67.45  Aligned_cols=50  Identities=12%  Similarity=0.048  Sum_probs=33.7

Q ss_pred             HHHHhhhCCeEEEee-eEEEe---cCCeEEEEeC-CCCeeEEEcCeEEEccCCCC
Q psy14927        848 IAHLFKSNKVTQLNG-HGKIT---GPNTVTVIKS-DGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       848 ~~~~l~~~gV~~~~g-~v~~i---d~~~~~v~~~-~G~~~~i~~d~lIIATG~~p  897 (1074)
                      +.+.+...|+.++++ +++.+   +.+...|++. +|+..++++|.||-|-|.+.
T Consensus       109 L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~~S  163 (390)
T TIGR02360       109 LMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDGFHG  163 (390)
T ss_pred             HHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCCCch
Confidence            334445568888887 33433   4455667665 77445799999999999865

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK11189 lipoprotein NlpI; Provisional

Probab=95.56  E-value=0.48  Score=53.19  Aligned_cols=60  Identities=18%  Similarity=0.096  Sum_probs=41.8

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHH
Q psy14927         50 PVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYS  129 (1074)
Q Consensus        50 ~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~  129 (1074)
                      +..|-..|..+...|+++.|...|.++-..                     .+++..+.+.+|..|...|++++|++.|.
T Consensus        64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l---------------------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~  122 (296)
T PRK11189         64 AQLHYERGVLYDSLGLRALARNDFSQALAL---------------------RPDMADAYNYLGIYLTQAGNFDAAYEAFD  122 (296)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc---------------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            456777788888888888888877766332                     33455666777777777777777776543


Q ss_pred             H
Q psy14927        130 V  130 (1074)
Q Consensus       130 ~  130 (1074)
                      +
T Consensus       123 ~  123 (296)
T PRK11189        123 S  123 (296)
T ss_pred             H
Confidence            3

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=95.56  E-value=0.0089  Score=69.50  Aligned_cols=47  Identities=21%  Similarity=0.327  Sum_probs=34.3

Q ss_pred             HHHHhh-hCCeEEEeeeEEEecC--C--eEEEEeCCCCeeEEEcCeEEEccCCC
Q psy14927        848 IAHLFK-SNKVTQLNGHGKITGP--N--TVTVIKSDGSTEEVKTKNILIATGSE  896 (1074)
Q Consensus       848 ~~~~l~-~~gV~~~~g~v~~id~--~--~~~v~~~~G~~~~i~~d~lIIATG~~  896 (1074)
                      ++..+. ..|++++.+.|+.+..  +  -.-|++.+|  ..+.++.|||+||.-
T Consensus       106 mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G--~~~~a~aVVlTTGTF  157 (621)
T COG0445         106 MKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADG--PEFHAKAVVLTTGTF  157 (621)
T ss_pred             HHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEeCCC--CeeecCEEEEeeccc
Confidence            344443 3489999998776532  2  255778888  789999999999984

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=95.54  E-value=0.0034  Score=65.08  Aligned_cols=39  Identities=18%  Similarity=0.015  Sum_probs=29.0

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhh
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLET  832 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~  832 (1074)
                      ..+|+|+||||+|++||++|++     .+||+....|+.+....
T Consensus        17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg   60 (230)
T PF01946_consen   17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGG   60 (230)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-C
T ss_pred             cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccc
Confidence            3459999999999999999999     78998887777665443

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=95.54  E-value=0.12  Score=60.81  Aligned_cols=54  Identities=20%  Similarity=0.267  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEec-CCeE-EEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927        948 GEVAKQFQRILGKQGMQFKLGTKVTGASKS-GDNI-TVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus       948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~-~~~~-~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
                      ..+...+.+.+.+.|++++.++.|+++... ++.+ .|.+.+      + ++.++.||+|+|-
T Consensus       183 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~------g-~i~a~~vVvaagg  238 (407)
T TIGR01373       183 DAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTR------G-FIGAKKVGVAVAG  238 (407)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCC------c-eEECCEEEECCCh
Confidence            344555667788999999999999999753 2332 343322      2 5899998887664

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=95.49  E-value=0.026  Score=65.79  Aligned_cols=47  Identities=13%  Similarity=0.212  Sum_probs=32.7

Q ss_pred             HHHHhhhC-CeEEEee-eEEEe--cCCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        848 IAHLFKSN-KVTQLNG-HGKIT--GPNTVTVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       848 ~~~~l~~~-gV~~~~g-~v~~i--d~~~~~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                      +.+.+... +++++.+ +++.+  +++.+.+.+.++   ++.+|.||.|-|...
T Consensus       110 L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~---~~~adlvIgADG~~S  160 (374)
T PRK06617        110 LLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK---QIKCNLLIICDGANS  160 (374)
T ss_pred             HHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC---EEeeCEEEEeCCCCc
Confidence            33444444 4888887 45554  345667777654   799999999999875

>KOG2247|consensus

Probab=95.42  E-value=0.00056  Score=77.12  Aligned_cols=150  Identities=15%  Similarity=0.107  Sum_probs=125.0

Q ss_pred             HhhhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhCHHHHHHHHH--HcCCHHHHHHHHHhcCCcHHHHHHHHHHHhcCCHH
Q psy14927        619 ILIIYRVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLC--FLQDFSRAAELANASGDTAAAYHLARQYENSGQFD  696 (1074)
Q Consensus       619 ~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~ag~~~~ai~~~~--~~~~~~~a~~v~~~~~~~~~~~~~A~~~~~~g~~~  696 (1074)
                      ..+++|+.+-.+|.+.+..+  ..|. .|..+++....+|.|.  ++.+.++|.+++..+  .+.++..|++|... +|.
T Consensus       222 ~sVvsgKkhl~yak~nE~D~--pval-~fq~~~gni~cyrwylDg~i~igf~ag~iV~iS--~h~aeLgaeffqkl-dy~  295 (615)
T KOG2247|consen  222 VSVVSGKKHLMYAKYNELDE--PVAL-QFQEKYGNIHCYRWYLDGYILIGFDAGYIVSIS--AHNAELGAEFFQKL-DYR  295 (615)
T ss_pred             eeeeecHHHHHHHhhcCCCC--ccce-EeeecCCceeEEEEeccccccccccceeEEEEe--ccchHHHHHHHHHh-hHH
Confidence            34567888889999998887  6777 9999999999999984  689999999999766  66777889999999 999


Q ss_pred             HHHHHHHHcCCHHHHHHHhccHHHHHHHHHHhCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHcCCC
Q psy14927        697 EAIHFYSVAGSCGNAVRLCGQLDAVESIASELNVQSDQDLILKCASYFARREHHDRAVQMYAIARRYDQALSLIQTKHVP  776 (1074)
Q Consensus       697 ~A~~~~~kag~~~~Av~ma~~w~~a~~~A~~~~~~~~~~~~~~~a~~~~~~~~~~~Ai~~y~~ag~~~~Ai~~~~~~~~~  776 (1074)
                      .|.++...+++..+|+.++.+.++..++++.....   ...+..+.+++.....-.+.++|..++++..+...+.+.+.+
T Consensus       296 ~aLqsiavsqcvnkaftlgdn~nkvRdl~el~e~y---~n~L~eaek~lge~~~t~dgqlyals~Q~g~l~~fLtKLpil  372 (615)
T KOG2247|consen  296 GALQSIAVSQCVNKAFTLGDNMNKVRDLDELTEVY---MNTLIEAEKNLGEIEVTEDGQLYALSSQSGVLSIFLTKLPIL  372 (615)
T ss_pred             hhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---HHHHHHHHhccCceeeeeccceeeehhccchHHHHHHhhhhh
Confidence            99999999999999999988888888887765111   222566777777777789999999999999999998887664


Q ss_pred             C
Q psy14927        777 L  777 (1074)
Q Consensus       777 ~  777 (1074)
                      .
T Consensus       373 c  373 (615)
T KOG2247|consen  373 C  373 (615)
T ss_pred             h
Confidence            3

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=95.32  E-value=0.037  Score=65.97  Aligned_cols=51  Identities=16%  Similarity=0.002  Sum_probs=32.4

Q ss_pred             hHHHHhhhCCeEEEee-eEEEecC--C-e---EEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        847 GIAHLFKSNKVTQLNG-HGKITGP--N-T---VTVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       847 ~~~~~l~~~gV~~~~g-~v~~id~--~-~---~~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                      .+.+.+.+.||+++.+ .|+.+..  + .   +.+...++....+.++.||+|||+..
T Consensus       135 ~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~  192 (439)
T TIGR01813       135 KLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFG  192 (439)
T ss_pred             HHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCC
Confidence            3455566779999998 4665532  2 1   22333444334578999999999753

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=95.22  E-value=0.038  Score=64.80  Aligned_cols=103  Identities=19%  Similarity=0.167  Sum_probs=0.0

Q ss_pred             cchhhhhhccccchHHHHHHHhh--------hhhhhcccc----------ccccchhhhhhhhhHHH-------------
Q psy14927        793 QRQVVLNTLGNCAAVQANYHLAT--------KLFTQAGDK----------GVKLNLETMMGTKSAAV-------------  841 (1074)
Q Consensus       793 ~k~~VviiGgG~AGl~aA~~la~--------~l~e~~~~~----------g~~~~~~~~~~~~~~~~-------------  841 (1074)
                      .+.+|+||||||+|+++|+.|++        +++|+....          +..+..........--+             
T Consensus         2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~   81 (395)
T PRK05732          2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITH   81 (395)
T ss_pred             CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccE


Q ss_pred             ------------------------------hhhhhhHHHHhhh-CCeEEEee-eEEEe--cCCeEEEEeCCCCeeEEEcC
Q psy14927        842 ------------------------------KALTGGIAHLFKS-NKVTQLNG-HGKIT--GPNTVTVIKSDGSTEEVKTK  887 (1074)
Q Consensus       842 ------------------------------~~l~~~~~~~l~~-~gV~~~~g-~v~~i--d~~~~~v~~~~G~~~~i~~d  887 (1074)
                                                    ..+...+.+.+.. .|++++.+ +++.+  +.+.+.|++++|  ..+.+|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g--~~~~a~  159 (395)
T PRK05732         82 IHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDG--ETLTGR  159 (395)
T ss_pred             EEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCC--CEEEeC


Q ss_pred             eEEEccCCCC
Q psy14927        888 NILIATGSEV  897 (1074)
Q Consensus       888 ~lIIATG~~p  897 (1074)
                      .||.|.|...
T Consensus       160 ~vI~AdG~~S  169 (395)
T PRK05732        160 LLVAADGSHS  169 (395)
T ss_pred             EEEEecCCCh

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=95.19  E-value=0.088  Score=52.29  Aligned_cols=93  Identities=17%  Similarity=0.157  Sum_probs=72.3

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhh
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVR   84 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr   84 (1074)
                      .|.+.|++++|+++|+-.-..|                    ..+..=|-.+|-.+...|+|++|+.+|.+|.-.     
T Consensus        44 ~ly~~G~l~~A~~~f~~L~~~D--------------------p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-----   98 (157)
T PRK15363         44 QLMEVKEFAGAARLFQLLTIYD--------------------AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-----   98 (157)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC--------------------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence            3667888888888888877666                    223555777788888899999999999888766     


Q ss_pred             HhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHh
Q psy14927         85 VLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQ  144 (1074)
Q Consensus        85 ~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~  144 (1074)
                                      ..++....+++|..+...|+.+.|.+.|      +.||..|-.+
T Consensus        99 ----------------~~ddp~~~~~ag~c~L~lG~~~~A~~aF------~~Ai~~~~~~  136 (157)
T PRK15363         99 ----------------KIDAPQAPWAAAECYLACDNVCYAIKAL------KAVVRICGEV  136 (157)
T ss_pred             ----------------CCCCchHHHHHHHHHHHcCCHHHHHHHH------HHHHHHhccC
Confidence                            3357788999999999999999999864      5666666433

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=95.18  E-value=0.37  Score=50.47  Aligned_cols=146  Identities=17%  Similarity=0.160  Sum_probs=103.8

Q ss_pred             hhcCCHHHHHHHHHHcCcccchhhhHh---------hhcHHHHHHHhhc-----CCChHHHHHHHHHHHhccCHHHHHHH
Q psy14927          7 MKNGDIDRAIRMFEKAETHQQHVPRML---------LENTDKLEKYIIQ-----SKDPVLLKWWAQYIESTEDMDLAMKY   72 (1074)
Q Consensus         7 ~~~g~~~eA~~~Ye~~~~~~~~~~~~~---------~~~~~~~~~~~~~-----~~~~~l~~~~a~~~e~~~~~~~A~~~   72 (1074)
                      .+.|++..|-...+|+-.+|...++..         .+..+.+.+.-.+     +++-.++..||-|+=++|++++|..+
T Consensus        46 L~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~  125 (250)
T COG3063          46 LQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQ  125 (250)
T ss_pred             HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHH
Confidence            467888899999999888886653332         1345555554444     45566888888888888999998888


Q ss_pred             HHHh----------hChhhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhcCChHHHHHHHHHhCC----
Q psy14927         73 YEEA----------RDYLSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQFDEAIHFYSVAGS----  133 (1074)
Q Consensus        73 y~~a----------~d~~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~----  133 (1074)
                      |++|          +-|.+++=|-.+.|+++.|.+..+     ++....+...+|+...+.|++-.|-.||-+-..    
T Consensus       126 F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~  205 (250)
T COG3063         126 FERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGA  205 (250)
T ss_pred             HHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccc
Confidence            8874          456777777777788888888766     345667778888888888888888877765332    


Q ss_pred             ----hHHHHHHHHHhCchHHHHH
Q psy14927        134 ----CGNAVRLCKEQALDDQLWN  152 (1074)
Q Consensus       134 ----~~~A~~la~~~~~~~~~~~  152 (1074)
                          .-=.|++|+..|-.+..-.
T Consensus       206 ~A~sL~L~iriak~~gd~~~a~~  228 (250)
T COG3063         206 QAESLLLGIRIAKRLGDRAAAQR  228 (250)
T ss_pred             cHHHHHHHHHHHHHhccHHHHHH
Confidence                2335777777776555533

>KOG0495|consensus

Probab=95.17  E-value=0.49  Score=56.07  Aligned_cols=175  Identities=15%  Similarity=0.161  Sum_probs=123.1

Q ss_pred             hcCCHHHHHHHHHHcCcccchhhhHhh---------hcHHHHHHHhhc-----CCChHHHHHHHHHHHhccCHHHHHHHH
Q psy14927          8 KNGDIDRAIRMFEKAETHQQHVPRMLL---------ENTDKLEKYIIQ-----SKDPVLLKWWAQYIESTEDMDLAMKYY   73 (1074)
Q Consensus         8 ~~g~~~eA~~~Ye~~~~~~~~~~~~~~---------~~~~~~~~~~~~-----~~~~~l~~~~a~~~e~~~~~~~A~~~y   73 (1074)
                      .+.++++|-.++.++-... --+|+++         ++.+.+..|+..     +.-++||...||..|+.++.+.|.+.|
T Consensus       630 en~e~eraR~llakar~~s-gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY  708 (913)
T KOG0495|consen  630 ENDELERARDLLAKARSIS-GTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAY  708 (913)
T ss_pred             ccccHHHHHHHHHHHhccC-CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            3468999999998876433 3355654         345566666655     577899999999999999999999999


Q ss_pred             HHhhC--------hhhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhcCChHHHHHHHHHh--------C
Q psy14927         74 EEARD--------YLSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQFDEAIHFYSVA--------G  132 (1074)
Q Consensus        74 ~~a~d--------~~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a--------~  132 (1074)
                      .+.=-        |.+++++=...|++-+|..|..     ++++.......=|+=.+.|+.++|-.+..+|        -
T Consensus       709 ~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~  788 (913)
T KOG0495|consen  709 LQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGL  788 (913)
T ss_pred             HhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccch
Confidence            88543        4667777777788888888764     2334433334446666788888887776664        2


Q ss_pred             ChHHHHHHHHHhCchHHHHHHhhh--cCchhHHHHHHHHcc-CChhHHHHHHHH
Q psy14927        133 SCGNAVRLCKEQALDDQLWNLALS--AGPSEQIEAATYLET-IEPDKAVLLYHK  183 (1074)
Q Consensus       133 ~~~~A~~la~~~~~~~~~~~l~~~--~~~~~~~~~A~~~e~-~~~~~A~~ly~k  183 (1074)
                      -|.+||-|...++......+..-.  ..+.+++.+|..|=+ .++++|-.-|.+
T Consensus       789 LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~R  842 (913)
T KOG0495|consen  789 LWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFER  842 (913)
T ss_pred             hHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            388888888888777666665533  445677777776654 667777776654

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=95.16  E-value=0.81  Score=49.25  Aligned_cols=63  Identities=11%  Similarity=0.102  Sum_probs=42.9

Q ss_pred             HHHHhHHHHhhcCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhcCChHHHhhHHHHHHHH
Q psy14927        276 VSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGNYEKGLGALNEAKRC  346 (1074)
Q Consensus       276 ~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  346 (1074)
                      ...|... -..|+|..|...+..+++........      ..........+.+ .|+++.|+..+.+....
T Consensus       170 ~~~a~~~-~~~g~~~~A~~~~~~al~~~p~~~~~------~~a~~~l~~~~~~-lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       170 LYVARFY-LKRGAYVAAINRFETVVENYPDTPAT------EEALARLVEAYLK-LGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHH-HHcCChHHHHHHHHHHHHHCCCCcch------HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhh
Confidence            3455555 66799999999999988876553111      1122344566777 69999999977766554

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=95.07  E-value=0.16  Score=61.09  Aligned_cols=57  Identities=18%  Similarity=0.256  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEecC--Ce----EEEEEeeccCCCC-ceEEEcCEEEEccCC
Q psy14927        948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSG--DN----ITVTIENVKDPTK-KEELSCDALLVCVGR 1008 (1074)
Q Consensus       948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~--~~----~~v~~~~~~~~g~-~~~i~~D~vi~a~G~ 1008 (1074)
                      .-+.+.+.+.|++.|++|+++++|++|..++  ++    ..|.+.+    |. +.++.+|.||+|++.
T Consensus       219 ~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~----g~~~~~~~aD~VVlA~p~  282 (474)
T TIGR02732       219 KYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSK----PEGKKVIKADAYVAACDV  282 (474)
T ss_pred             hhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEec----CCcceEEECCEEEECCCh
Confidence            3355667889999999999999999998643  21    2233433    22 356999999999873

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.02  E-value=0.15  Score=63.36  Aligned_cols=61  Identities=13%  Similarity=0.093  Sum_probs=41.9

Q ss_pred             CHHHHHHHHHHHHhC--------C-----CEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927        947 DGEVAKQFQRILGKQ--------G-----MQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus       947 ~~~~~~~~~~~l~~~--------g-----V~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
                      ...+...+.+.+.+.        |     |+++.++.+.++..+++. ..+...+.. +++...+.++.||+|||-
T Consensus       137 G~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~~g~v~Gv~~~~~~-~g~~~~i~Ak~VVlATGG  211 (626)
T PRK07803        137 GLELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKDGGRIAGAFGYWRE-SGRFVLFEAPAVVLATGG  211 (626)
T ss_pred             HHHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEECCEEEEEEEEECC-CCeEEEEEcCeEEECCCc
Confidence            345666677766665        6     999999999998754443 333332211 354567999999999985

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=94.98  E-value=0.22  Score=61.33  Aligned_cols=59  Identities=7%  Similarity=0.013  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEcCEEEEccC
Q psy14927        948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVG 1007 (1074)
Q Consensus       948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G 1007 (1074)
                      ..+...+.+.+.+.||+++.++.++++..+++. +.+...+.. +++...+.++.||+|||
T Consensus       136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~-~g~~~~i~AkaVVLATG  195 (566)
T PRK06452        136 MALLHTLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMK-TLTPFFFKTKAVVLATG  195 (566)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECC-CCeEEEEEeCeEEECCC
Confidence            345556666677789999999999998865443 445544422 34456789999999998

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=94.98  E-value=0.0098  Score=50.68  Aligned_cols=31  Identities=19%  Similarity=0.240  Sum_probs=27.1

Q ss_pred             hhccccchHHHHHHHhh-----hhhhhccccccccc
Q psy14927        799 NTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLN  829 (1074)
Q Consensus       799 iiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~  829 (1074)
                      |||||++||++|+.|++     ++||+.+..|+...
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~   36 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRAR   36 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGC
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCccee
Confidence            79999999999999999     89999998888664

...

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=94.97  E-value=0.064  Score=45.47  Aligned_cols=62  Identities=24%  Similarity=0.360  Sum_probs=52.7

Q ss_pred             ChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcC-ChHHHHHH
Q psy14927         49 DPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSG-QFDEAIHF  127 (1074)
Q Consensus        49 ~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g-~~~~Ai~~  127 (1074)
                      ++..|...|..+...|+|++|+++|.++=++                     .+.+..+.+.+|..|.++| ++++|+++
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~---------------------~p~~~~~~~~~g~~~~~~~~~~~~A~~~   60 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL---------------------DPNNAEAYYNLGLAYMKLGKDYEEAIED   60 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH---------------------STTHHHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---------------------CCCCHHHHHHHHHHHHHhCccHHHHHHH
Confidence            5778999999999999999999999887666                     2345668889999999999 79999998


Q ss_pred             HHHh
Q psy14927        128 YSVA  131 (1074)
Q Consensus       128 y~~a  131 (1074)
                      |.++
T Consensus        61 ~~~a   64 (69)
T PF13414_consen   61 FEKA   64 (69)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8765

...

>KOG1524|consensus

Probab=94.92  E-value=0.1  Score=59.80  Aligned_cols=110  Identities=12%  Similarity=0.100  Sum_probs=81.3

Q ss_pred             hhHhh-hcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHH
Q psy14927         30 PRMLL-ENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAA  108 (1074)
Q Consensus        30 ~~~~~-~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~  108 (1074)
                      +++.. ..|+++..+........||..+|-.+-...++..++.+|+++++.+.+--+-.-.+.++++.+.+..      .
T Consensus       581 ~e~~sssKWeqavRLCrfv~eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~~mA~~------~  654 (737)
T KOG1524|consen  581 HEYLSSSKWEQAVRLCRFVQEQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEEQMAEN------S  654 (737)
T ss_pred             HHHhccchHHHHHHHHHhccchHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHHHHHHH------H
Confidence            34444 3799999999999999999999999999999999999999999996554443333334444444332      2


Q ss_pred             HHHHH------HHHhcCChHHHHHHHHHhCChHHHHHHHHHhC
Q psy14927        109 YHLAR------QYENSGQFDEAIHFYSVAGSCGNAVRLCKEQA  145 (1074)
Q Consensus       109 ~~la~------~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~  145 (1074)
                      .++++      .++..|.+.+|+.+-++-++|+.|++|+.+|.
T Consensus       655 l~~G~~~eAe~iLl~~gl~~qav~lni~m~nW~RALEl~~K~K  697 (737)
T KOG1524|consen  655 LMLGRMLEAETILLHGGLIEQAVGLNIRMHNWRRALELSQKHK  697 (737)
T ss_pred             HHhccchhhhHHHHhcchHHHhhhhhhhhhhHHHHHHHHHhHH
Confidence            23332      34467788888888888888888888888883

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=94.91  E-value=0.2  Score=62.48  Aligned_cols=60  Identities=17%  Similarity=0.296  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHhCC--CEEEeCceEEEEEecC---CeEEEEEeeccC--CCCceEEEcCEEEEccCCc
Q psy14927        950 VAKQFQRILGKQG--MQFKLGTKVTGASKSG---DNITVTIENVKD--PTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus       950 ~~~~~~~~l~~~g--V~i~~~~~v~~i~~~~---~~~~v~~~~~~~--~g~~~~i~~D~vi~a~G~~ 1009 (1074)
                      +.+.+.+.+.+.|  |.+..+++++.++.++   ..+.+++.+.++  +|+.+++.+|.||-|-|.+
T Consensus       143 le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~  209 (634)
T PRK08294        143 VHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGAR  209 (634)
T ss_pred             HHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCc
Confidence            4455667776665  5788899999997543   237787775310  2444789999999987754

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=94.81  E-value=0.1  Score=64.90  Aligned_cols=56  Identities=13%  Similarity=0.186  Sum_probs=40.4

Q ss_pred             HHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927        952 KQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus       952 ~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
                      +.+.+.+++.||+++.++.+.++..+++. +.|...+.. +|+...+.++.||+|||-
T Consensus       174 ~~L~~~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~-~g~~~~i~AkaVVLATGG  230 (640)
T PRK07573        174 QALSRQIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLV-TGEIERHTADAVVLATGG  230 (640)
T ss_pred             HHHHHHHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECC-CCcEEEEECCEEEECCCC
Confidence            44556677889999999999998754443 445554422 344567999999999985

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=94.81  E-value=0.16  Score=58.79  Aligned_cols=51  Identities=27%  Similarity=0.477  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHhC-CCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927        948 GEVAKQFQRILGKQ-GMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus       948 ~~~~~~~~~~l~~~-gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
                      ..+...+.+.+.+. |++++.++.|..++..    .|++.+    |   .+.+|.||+|+|.-
T Consensus       145 ~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~----~v~t~~----g---~i~a~~VV~A~G~~  196 (365)
T TIGR03364       145 REAIPALAAYLAEQHGVEFHWNTAVTSVETG----TVRTSR----G---DVHADQVFVCPGAD  196 (365)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeCCeEEEEecC----eEEeCC----C---cEEeCEEEECCCCC
Confidence            34555666666664 9999999999999752    344332    2   36899999999964

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.80  E-value=0.079  Score=64.30  Aligned_cols=59  Identities=14%  Similarity=0.151  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927        948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus       948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
                      ..+...+.....+.|++++.++.|.++..+++.+.|++.+.  .|+..++.++.||.|+|.
T Consensus       155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~--~g~~~~i~a~~VVnAaG~  213 (502)
T PRK13369        155 ARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDA--DGETRTVRARALVNAAGP  213 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeC--CCCEEEEEecEEEECCCc
Confidence            44555556667889999999999999988766666666552  144567999999999995

>KOG2114|consensus

Probab=94.80  E-value=0.67  Score=56.57  Aligned_cols=122  Identities=13%  Similarity=0.107  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHh-------------------------------------hCHHHHHHHHHHcCCHH
Q psy14927        625 VLLKWWAQYIESTEDMDLAMKYYEEA-------------------------------------RDYLSMVRVLCFLQDFS  667 (1074)
Q Consensus       625 ~l~~~~a~~~e~~~~~~~A~~~y~~a-------------------------------------g~~~~ai~~~~~~~~~~  667 (1074)
                      ++++.+|.|+-..|+|++|...|+++                                     ....-.+.||.+++|.+
T Consensus       369 ~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~  448 (933)
T KOG2114|consen  369 EIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVE  448 (933)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchH
Confidence            89999999999999999999999998                                     22333344455555555


Q ss_pred             HHHHHHHhcCCcHH---HHHHHHHHHhcCCHHHHHHHHHHcCCHHHHHHH----hccHHHHHHHHHHhCCcccHHHHHHH
Q psy14927        668 RAAELANASGDTAA---AYHLARQYENSGQFDEAIHFYSVAGSCGNAVRL----CGQLDAVESIASELNVQSDQDLILKC  740 (1074)
Q Consensus       668 ~a~~v~~~~~~~~~---~~~~A~~~~~~g~~~~A~~~~~kag~~~~Av~m----a~~w~~a~~~A~~~~~~~~~~~~~~~  740 (1074)
                      +..+..+..+.-+.   ....=+.+.+.+-+++|..+-.+.++.+.++++    -+++++|+++-+..-++..-..+.++
T Consensus       449 kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~he~vl~ille~~~ny~eAl~yi~slp~~e~l~~l~ky  528 (933)
T KOG2114|consen  449 KLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKKHEWVLDILLEDLHNYEEALRYISSLPISELLRTLNKY  528 (933)
T ss_pred             HHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhccCHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHHHH
Confidence            55544433221111   112223344444444455555555554444433    35566666666665444444555666


Q ss_pred             HHHHHH
Q psy14927        741 ASYFAR  746 (1074)
Q Consensus       741 a~~~~~  746 (1074)
                      ++.|+.
T Consensus       529 Gk~Ll~  534 (933)
T KOG2114|consen  529 GKILLE  534 (933)
T ss_pred             HHHHHh
Confidence            666543

>PRK06996 hypothetical protein; Provisional

Probab=94.75  E-value=0.04  Score=64.79  Aligned_cols=99  Identities=11%  Similarity=0.053  Sum_probs=0.0

Q ss_pred             hhhhhccccchHHHHHHHhh---------hhhhhcccccccc--------------------------------------
Q psy14927        796 VVLNTLGNCAAVQANYHLAT---------KLFTQAGDKGVKL--------------------------------------  828 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~---------~l~e~~~~~g~~~--------------------------------------  828 (1074)
                      +|+||||||+|+++|+.|++         +++|+.+......                                      
T Consensus        13 dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~   92 (398)
T PRK06996         13 DIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQRGH   92 (398)
T ss_pred             CEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEecCCC


Q ss_pred             ---------chhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEe--cCCeEEEEeCCCCe-eEEEcCeEEEccC
Q psy14927        829 ---------NLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKIT--GPNTVTVIKSDGST-EEVKTKNILIATG  894 (1074)
Q Consensus       829 ---------~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~i--d~~~~~v~~~~G~~-~~i~~d~lIIATG  894 (1074)
                               ++........-....+...+.+.+...|+++..+ +++.+  +.+.+++++.+|.. .++++|.||-|.|
T Consensus        93 ~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG  171 (398)
T PRK06996         93 FGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEG  171 (398)
T ss_pred             CceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCC

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=94.73  E-value=0.055  Score=64.88  Aligned_cols=88  Identities=15%  Similarity=0.073  Sum_probs=54.5

Q ss_pred             hhhhhhccccchHHHHHHHhh------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEe
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKIT  867 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~i  867 (1074)
                      ++|+|||||..|+.+|..+.+      +++...+..       .++..         ....+.+...||+++++ .++.+
T Consensus       274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~-------~~~~~---------~~~~~~~~~~GV~i~~~~~v~~i  337 (457)
T PRK11749        274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGRE-------EMPAS---------EEEVEHAKEEGVEFEWLAAPVEI  337 (457)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcc-------cCCCC---------HHHHHHHHHCCCEEEecCCcEEE
Confidence            349999999999999999876      222221110       01111         11234566789999998 45555


Q ss_pred             cCCe-----EEEEe---------------CCCCeeEEEcCeEEEccCCCCC
Q psy14927        868 GPNT-----VTVIK---------------SDGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       868 d~~~-----~~v~~---------------~~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      ..+.     +++..               .+|+..++.+|.||+|+|.+|.
T Consensus       338 ~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~  388 (457)
T PRK11749        338 LGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPN  388 (457)
T ss_pred             EecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCC
Confidence            4322     33221               1233467999999999999984

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.72  E-value=0.0056  Score=60.66  Aligned_cols=122  Identities=20%  Similarity=0.276  Sum_probs=85.7

Q ss_pred             ChhhhhhHhhccCCHHHHHH----HHHh--cCChHHHHHHHHHHHhcCChHHHHHHHHHhCCh--HHHHHHHHHhCchHH
Q psy14927         78 DYLSMVRVLCFLQDFSRAAE----LANA--SGDTAAAYHLARQYENSGQFDEAIHFYSVAGSC--GNAVRLCKEQALDDQ  149 (1074)
Q Consensus        78 d~~~~vr~l~~~~~~~~a~~----i~~~--~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~--~~A~~la~~~~~~~~  149 (1074)
                      +...+|+.+...+.+..+.+    +..+  ..+..-...++..|.+.+..+..++|+.....|  +.|.++|+++     
T Consensus         9 ~~~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~yd~~~~~~~c~~~-----   83 (143)
T PF00637_consen    9 EISEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNNYDLDKALRLCEKH-----   83 (143)
T ss_dssp             CSCCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSSS-CTHHHHHHHTT-----
T ss_pred             CHHHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccccCHHHHHHHHHhc-----
Confidence            34455555555555544422    2322  234555668888888888888888887765553  3444444444     


Q ss_pred             HHHHhhhcCchhHHHHHHHHccCChhHHHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhh
Q psy14927        150 LWNLALSAGPSEQIEAATYLETIEPDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGV  229 (1074)
Q Consensus       150 ~~~l~~~~~~~~~~~~A~~~e~~~~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~  229 (1074)
                                            +-++.|+.+|.+.|++.+|++++.+                    .++++.+++++..
T Consensus        84 ----------------------~l~~~a~~Ly~~~~~~~~al~i~~~--------------------~~~~~~a~e~~~~  121 (143)
T PF00637_consen   84 ----------------------GLYEEAVYLYSKLGNHDEALEILHK--------------------LKDYEEAIEYAKK  121 (143)
T ss_dssp             ----------------------TSHHHHHHHHHCCTTHTTCSSTSSS--------------------THCSCCCTTTGGG
T ss_pred             ----------------------chHHHHHHHHHHcccHHHHHHHHHH--------------------HccHHHHHHHHHh
Confidence                                  4468899999999999999997444                    7889999999999


Q ss_pred             cchHHHHHHHHHHHhcC
Q psy14927        230 SRMKEIYVMAANYLQSS  246 (1074)
Q Consensus       230 ~r~~~l~~~aa~yl~~~  246 (1074)
                      +.++++|..+++|+...
T Consensus       122 ~~~~~l~~~l~~~~l~~  138 (143)
T PF00637_consen  122 VDDPELWEQLLKYCLDS  138 (143)
T ss_dssp             CSSSHHHHHHHHHHCTS
T ss_pred             cCcHHHHHHHHHHHHhc
Confidence            99999999999998765

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=94.62  E-value=0.45  Score=51.22  Aligned_cols=26  Identities=12%  Similarity=-0.178  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHh
Q psy14927         51 VLLKWWAQYIESTEDMDLAMKYYEEA   76 (1074)
Q Consensus        51 ~l~~~~a~~~e~~~~~~~A~~~y~~a   76 (1074)
                      ..+...|..+...|++++|...|..+
T Consensus        71 ~a~~~la~~~~~~~~~~~A~~~~~~~   96 (235)
T TIGR03302        71 QAQLDLAYAYYKSGDYAEAIAAADRF   96 (235)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            35566688888888888888888775

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=94.61  E-value=4.2  Score=45.80  Aligned_cols=193  Identities=26%  Similarity=0.313  Sum_probs=119.0

Q ss_pred             HHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHH-HHH
Q psy14927         37 TDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLA-RQY  115 (1074)
Q Consensus        37 ~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la-~~~  115 (1074)
                      -.+...++.+...|-++..=||..+-.|+++.|-+-|+.--|... .|+|.--|-+=+|.++    |+.+++.+-| +-+
T Consensus       107 t~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPE-tRllGLRgLyleAqr~----GareaAr~yAe~Aa  181 (531)
T COG3898         107 TARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPE-TRLLGLRGLYLEAQRL----GAREAARHYAERAA  181 (531)
T ss_pred             HHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChH-HHHHhHHHHHHHHHhc----ccHHHHHHHHHHHH
Confidence            345566777777777888889999999999999999999777644 4554444444333332    4455544333 333


Q ss_pred             HhcCC----hHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHccC--ChhHHHHHHHHhC----
Q psy14927        116 ENSGQ----FDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLETI--EPDKAVLLYHKAG----  185 (1074)
Q Consensus       116 ~~~g~----~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~--~~~~A~~ly~kaG----  185 (1074)
                      ++.-.    ...-++-.+.+|+|+.|++|....                   ..+...|..  +-.+|+.|=.||+    
T Consensus       182 ~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~-------------------~~~~vie~~~aeR~rAvLLtAkA~s~ld  242 (531)
T COG3898         182 EKAPQLPWAARATLEARCAAGDWDGALKLVDAQ-------------------RAAKVIEKDVAERSRAVLLTAKAMSLLD  242 (531)
T ss_pred             hhccCCchHHHHHHHHHHhcCChHHHHHHHHHH-------------------HHHHhhchhhHHHHHHHHHHHHHHHHhc
Confidence            33322    245577788899999999887665                   333444442  2355666666654    


Q ss_pred             -ChHHHHHHHHhhccCCcchH-HHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcCCCCCChhHHHHHHHHHH
Q psy14927        186 -ALHKALDLAFKLTLSNSGLV-FQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPELLKSIISFYS  263 (1074)
Q Consensus       186 -~~~kAl~l~~~~~~~~~~~~-~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~~~~~~~~~~~~i~~~Y~  263 (1074)
                       .+..|.+.+++......++. --+-|.+.|.+.|++                -+++..|++- |...|.-  .|..+|.
T Consensus       243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~----------------rKg~~ilE~a-WK~ePHP--~ia~lY~  303 (531)
T COG3898         243 ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNL----------------RKGSKILETA-WKAEPHP--DIALLYV  303 (531)
T ss_pred             CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccch----------------hhhhhHHHHH-HhcCCCh--HHHHHHH
Confidence             34555665555432222221 135677777777766                4566677776 7776532  5677887


Q ss_pred             ccCCHHHHH
Q psy14927        264 KGKAPHLLA  272 (1074)
Q Consensus       264 k~~~~~~aa  272 (1074)
                      .++.-+.+-
T Consensus       304 ~ar~gdta~  312 (531)
T COG3898         304 RARSGDTAL  312 (531)
T ss_pred             HhcCCCcHH
Confidence            777666544

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=94.60  E-value=0.19  Score=62.14  Aligned_cols=60  Identities=13%  Similarity=0.100  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHH----hCCCEEEeCceEEEEEecCC-e-EEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927        948 GEVAKQFQRILG----KQGMQFKLGTKVTGASKSGD-N-ITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus       948 ~~~~~~~~~~l~----~~gV~i~~~~~v~~i~~~~~-~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
                      ..+...+.+.++    +.||+++.++.+.++..+++ . +.|...+.. +++...+.++.||+|||-
T Consensus       129 ~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~-~g~~~~i~AkaVVLATGG  194 (603)
T TIGR01811       129 QQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNLV-TGEIETHSADAVILATGG  194 (603)
T ss_pred             hHHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEECC-CCcEEEEEcCEEEECCCC
Confidence            344444444443    34899999999999875333 2 445554422 344567899999999976

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=94.57  E-value=0.067  Score=63.71  Aligned_cols=48  Identities=27%  Similarity=0.237  Sum_probs=35.4

Q ss_pred             HHHHhhhC---CeEEEee-eEEEec---------CCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        848 IAHLFKSN---KVTQLNG-HGKITG---------PNTVTVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       848 ~~~~l~~~---gV~~~~g-~v~~id---------~~~~~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                      +.+.+...   +|+++.+ +++.++         ...++|++.+|  .++++|.||-|-|...
T Consensus       123 L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g--~~i~a~llVgADG~~S  183 (437)
T TIGR01989       123 LYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDG--QVLYTKLLIGADGSNS  183 (437)
T ss_pred             HHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCC--CEEEeeEEEEecCCCC
Confidence            34444554   4999988 566663         34577888888  6899999999999975

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>KOG1126|consensus

Probab=94.53  E-value=0.31  Score=58.05  Aligned_cols=71  Identities=23%  Similarity=0.292  Sum_probs=53.0

Q ss_pred             cCCHHHHHHHHHHcCcccchhhhHhh---------hcHHHHHHHhhcC--CChHHHHHH---HHHHHhccCHHHHHHHHH
Q psy14927          9 NGDIDRAIRMFEKAETHQQHVPRMLL---------ENTDKLEKYIIQS--KDPVLLKWW---AQYIESTEDMDLAMKYYE   74 (1074)
Q Consensus         9 ~g~~~eA~~~Ye~~~~~~~~~~~~~~---------~~~~~~~~~~~~~--~~~~l~~~~---a~~~e~~~~~~~A~~~y~   74 (1074)
                      +++.+.|++.++++-+.|.....-|+         +.++++..+..+.  -+|.-.+.|   |-.+..+++++.|+-.|.
T Consensus       434 Qkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fq  513 (638)
T KOG1126|consen  434 QKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQ  513 (638)
T ss_pred             hhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHH
Confidence            67899999999999999966655553         3466666666662  345544444   788888999999999998


Q ss_pred             HhhCh
Q psy14927         75 EARDY   79 (1074)
Q Consensus        75 ~a~d~   79 (1074)
                      +|-++
T Consensus       514 kA~~I  518 (638)
T KOG1126|consen  514 KAVEI  518 (638)
T ss_pred             hhhcC
Confidence            88877

>PRK04841 transcriptional regulator MalT; Provisional

Probab=94.52  E-value=4.7  Score=52.85  Aligned_cols=253  Identities=11%  Similarity=-0.007  Sum_probs=132.9

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhcc-------CCHHHHHHHHHhc------CChHHHHHHHHHHH
Q psy14927         50 PVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFL-------QDFSRAAELANAS------GDTAAAYHLARQYE  116 (1074)
Q Consensus        50 ~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~-------~~~~~a~~i~~~~------~~~~~~~~la~~~~  116 (1074)
                      ..|++..|.|+...|++.+|+.++..++|+....+++...       |+++.+......-      ++.......+..+.
T Consensus       341 ~~lh~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~  420 (903)
T PRK04841        341 PELHRAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ  420 (903)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH
Confidence            4688999999999999999999999999998888775543       4454444443321      12222334444444


Q ss_pred             hcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHccCChhHHHHHHHHhCChHHHHHHHHh
Q psy14927        117 NSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLETIEPDKAVLLYHKAGALHKALDLAFK  196 (1074)
Q Consensus       117 ~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~~~~~A~~ly~kaG~~~kAl~l~~~  196 (1074)
                      ..|++++|...+..+      .+.....+         ....+.....+.        -....++...|++.+|..++.+
T Consensus       421 ~~g~~~~a~~~l~~a------~~~~~~~~---------~~~~~~~~~~~~--------~~~a~~~~~~g~~~~A~~~~~~  477 (903)
T PRK04841        421 SQHRYSEVNTLLARA------EQELKDRN---------IELDGTLQAEFN--------ALRAQVAINDGDPEEAERLAEL  477 (903)
T ss_pred             HCCCHHHHHHHHHHH------HHhccccC---------cccchhHHHHHH--------HHHHHHHHhCCCHHHHHHHHHH
Confidence            555665555554322      11000000         000000000000        0012345556667666666554


Q ss_pred             hccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHccCCHHHHHHHHH
Q psy14927        197 LTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYV  276 (1074)
Q Consensus       197 ~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~  276 (1074)
                      .             ... ...++..  ....      -...++..+....+.+.-...+......+...+.....+....
T Consensus       478 a-------------l~~-~~~~~~~--~~~~------a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~  535 (903)
T PRK04841        478 A-------------LAE-LPLTWYY--SRIV------ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLL  535 (903)
T ss_pred             H-------------Hhc-CCCccHH--HHHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHH
Confidence            2             100 0111110  0000      0011111111111111111334445555565566555566666


Q ss_pred             HHHhHHHHhhcCHHHHHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHhhcCChHHHhhHHHHHHHHHhhcc
Q psy14927        277 SCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDS-MYETLKSSVVEKLAEVEIDEFGNYEKGLGALNEAKRCLLKHN  351 (1074)
Q Consensus       277 ~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  351 (1074)
                      ..+... ...|++..|...+.+++......+.. .+.  ...+......++.. .|+++.|...+.++......++
T Consensus       536 ~la~~~-~~~G~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~-~G~~~~A~~~~~~al~~~~~~~  607 (903)
T PRK04841        536 QQSEIL-FAQGFLQAAYETQEKAFQLIEEQHLEQLPM--HEFLLRIRAQLLWE-WARLDEAEQCARKGLEVLSNYQ  607 (903)
T ss_pred             HHHHHH-HHCCCHHHHHHHHHHHHHHHHHhccccccH--HHHHHHHHHHHHHH-hcCHHHHHHHHHHhHHhhhccC
Confidence            677777 78999999999999999988876532 121  11111123445556 6999999998888777655444

>KOG2002|consensus

Probab=94.48  E-value=5.2  Score=50.10  Aligned_cols=215  Identities=17%  Similarity=0.132  Sum_probs=105.9

Q ss_pred             CChHHHHHHHHHHHhccCHHHHHHHHHHhhCh------------------hhhhhHhhccCCHHHHHHHHHh-----cCC
Q psy14927         48 KDPVLLKWWAQYIESTEDMDLAMKYYEEARDY------------------LSMVRVLCFLQDFSRAAELANA-----SGD  104 (1074)
Q Consensus        48 ~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~------------------~~~vr~l~~~~~~~~a~~i~~~-----~~~  104 (1074)
                      -.|+++...|-.....|++.+|...|.+|...                  .++.|++.++++++.|.++.++     ++=
T Consensus       450 ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~Y  529 (1018)
T KOG2002|consen  450 IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGY  529 (1018)
T ss_pred             CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchh
Confidence            35667777777777777777777777765443                  1456666666677666665552     223


Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHh-C---ch--------HHHHHHh--hhcCchhHH--HHHH-
Q psy14927        105 TAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQ-A---LD--------DQLWNLA--LSAGPSEQI--EAAT-  167 (1074)
Q Consensus       105 ~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~-~---~~--------~~~~~l~--~~~~~~~~~--~~A~-  167 (1074)
                      +++..+++-+-...|...+|+.++..+...+...=-+... |   +-        ..+..+.  ....++.|.  ..|. 
T Consensus       530 Id~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~  609 (1018)
T KOG2002|consen  530 IDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNV  609 (1018)
T ss_pred             HHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHH
Confidence            3344455544455566666666666665555432222111 0   00        0000010  011112222  2332 


Q ss_pred             HHcc-----CChhHHHHHHHHhCCh-HHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHH
Q psy14927        168 YLET-----IEPDKAVLLYHKAGAL-HKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAAN  241 (1074)
Q Consensus       168 ~~e~-----~~~~~A~~ly~kaG~~-~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~  241 (1074)
                      ||+.     .+.+++-.+|.||=+. .++|+.-=+.-+.-+|      -.=+|+..|.++.+..+-...|.         
T Consensus       610 ~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANG------IgiVLA~kg~~~~A~dIFsqVrE---------  674 (1018)
T KOG2002|consen  610 YIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANG------IGIVLAEKGRFSEARDIFSQVRE---------  674 (1018)
T ss_pred             HHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccc------hhhhhhhccCchHHHHHHHHHHH---------
Confidence            3332     2234444444433222 2332221000000011      11234446666555444333332         


Q ss_pred             HHhcCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHhHH
Q psy14927        242 YLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSCAQVE  282 (1074)
Q Consensus       242 yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~a~~e  282 (1074)
                           .|...++..-+|..+|.-.|+|..|...|..|-..-
T Consensus       675 -----a~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf  710 (1018)
T KOG2002|consen  675 -----ATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKF  710 (1018)
T ss_pred             -----HHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                 234455666778889999999999998888885543

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=94.48  E-value=0.19  Score=62.14  Aligned_cols=61  Identities=8%  Similarity=0.034  Sum_probs=43.5

Q ss_pred             CHHHHHHHHHHHHhCCCEEEeCceEEEEEecC-C-eEEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927        947 DGEVAKQFQRILGKQGMQFKLGTKVTGASKSG-D-NITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus       947 ~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~-~-~~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
                      +..+...+.+.+.+.||+++.++.+.++..++ + .+.+...+.. +|+...+.+..||+|||-
T Consensus       148 G~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~-~g~~~~i~AkaVVLATGG  210 (598)
T PRK09078        148 GHAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLD-DGTLHRFRAHMVVLATGG  210 (598)
T ss_pred             HHHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECC-CCcEEEEEcCEEEECCCC
Confidence            34566677777788999999999999987543 3 2444443322 355568899999999874

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=94.47  E-value=0.034  Score=64.83  Aligned_cols=37  Identities=11%  Similarity=-0.017  Sum_probs=28.0

Q ss_pred             CCCCC-CCCCEEEecccCCCCCcHHHHHHHHHHHHHHhh
Q psy14927       1034 SRFQT-VIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1034 ~~~~t-s~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                      .++++ ..||+|.+|=+++.- --..|..+|-+|+.|++
T Consensus       322 ~~l~~k~~~~lf~AGQi~G~~-GY~Eaaa~Gl~agina~  359 (433)
T TIGR00137       322 ASLHFKDRQTLFFAGQLTGVE-GYVASTAGGWLAGINAA  359 (433)
T ss_pred             HHhccCCCCCEEECcccccch-HHHHHHHHHHHHHHHHH
Confidence            45666 689999999987653 34567888888888765

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=94.41  E-value=0.19  Score=57.99  Aligned_cols=85  Identities=13%  Similarity=0.063  Sum_probs=63.5

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhh
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVR   84 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr   84 (1074)
                      ++-..|+|++|+.+|.++-..+                    ++++..+..+|..+...|++++|+.+|.++=+.     
T Consensus        11 ~a~~~~~~~~Ai~~~~~Al~~~--------------------P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l-----   65 (356)
T PLN03088         11 EAFVDDDFALAVDLYTQAIDLD--------------------PNNAELYADRAQANIKLGNFTEAVADANKAIEL-----   65 (356)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC--------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence            4556788888888887776433                    345677788888888888888888777554333     


Q ss_pred             HhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHH
Q psy14927         85 VLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSV  130 (1074)
Q Consensus        85 ~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~  130 (1074)
                                      .+.+..+.+.+|..|...|++++|++.|.+
T Consensus        66 ----------------~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~   95 (356)
T PLN03088         66 ----------------DPSLAKAYLRKGTACMKLEEYQTAKAALEK   95 (356)
T ss_pred             ----------------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence                            234667788999999999999999987654

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=94.39  E-value=0.29  Score=60.58  Aligned_cols=62  Identities=11%  Similarity=0.032  Sum_probs=42.8

Q ss_pred             CHHHHHHHHHHHHhCCCEEEeCceEEEEEecC-C-eEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927        947 DGEVAKQFQRILGKQGMQFKLGTKVTGASKSG-D-NITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus       947 ~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~-~-~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
                      +..+...+.+...+.||+++.++.+.++..++ + ...+...+.. +|+...+.++.||+|+|--
T Consensus       147 G~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~-~g~~~~i~AkaVILATGG~  210 (591)
T PRK07057        147 GHALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEME-TGDVYILEAKTTLFATGGA  210 (591)
T ss_pred             hHHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcC-CCeEEEEECCeEEECCCCc
Confidence            34566666677778899999999999977532 3 2445443322 3545678899999999853

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=94.36  E-value=0.22  Score=48.41  Aligned_cols=84  Identities=17%  Similarity=0.213  Sum_probs=65.6

Q ss_pred             CChHHHHHHHHHHHhccCHHHHHHHHHHhhCh--------hhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHH
Q psy14927         48 KDPVLLKWWAQYIESTEDMDLAMKYYEEARDY--------LSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQ  114 (1074)
Q Consensus        48 ~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~--------~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~  114 (1074)
                      ++......+|..+...|++++|.++|..+-..        ..+..++..+|++++|..+.+     .+.+....+.+|..
T Consensus        15 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~   94 (135)
T TIGR02552        15 EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAEC   94 (135)
T ss_pred             hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence            44566778888899999999999999886442        235555778889998887655     24567788899999


Q ss_pred             HHhcCChHHHHHHHHHh
Q psy14927        115 YENSGQFDEAIHFYSVA  131 (1074)
Q Consensus       115 ~~~~g~~~~Ai~~y~~a  131 (1074)
                      |...|++++|+++|.++
T Consensus        95 ~~~~g~~~~A~~~~~~a  111 (135)
T TIGR02552        95 LLALGEPESALKALDLA  111 (135)
T ss_pred             HHHcCCHHHHHHHHHHH
Confidence            99999999999988644

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=94.31  E-value=0.11  Score=65.43  Aligned_cols=57  Identities=12%  Similarity=0.293  Sum_probs=43.3

Q ss_pred             CHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcc
Q psy14927        947 DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRP 1010 (1074)
Q Consensus       947 ~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p 1010 (1074)
                      +..+...+.+.+.+ |++++.++.|+.+...++++.|.+.+      +..+.+|.||+|+|...
T Consensus       407 p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~------g~~~~ad~VV~A~G~~s  463 (662)
T PRK01747        407 PAELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAG------GTLASAPVVVLANGHDA  463 (662)
T ss_pred             HHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECC------CcEEECCEEEECCCCCc
Confidence            34566777777778 99999999999998766665554332      45678999999999754

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=94.30  E-value=0.22  Score=61.86  Aligned_cols=60  Identities=7%  Similarity=-0.016  Sum_probs=42.9

Q ss_pred             CHHHHHHHHHHHHhCCCEEEeCceEEEEEe-cCCe-EEEEEeeccCCCCceEEEcCEEEEccC
Q psy14927        947 DGEVAKQFQRILGKQGMQFKLGTKVTGASK-SGDN-ITVTIENVKDPTKKEELSCDALLVCVG 1007 (1074)
Q Consensus       947 ~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~-~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G 1007 (1074)
                      +..+...+.+.+.+.||+++.++.+.++.. +++. ..+...+.. +|+...+.++.||+|||
T Consensus       165 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~-~g~~~~i~AkaVVLATG  226 (617)
T PTZ00139        165 GHAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSME-DGSIHRFRAHYTVIATG  226 (617)
T ss_pred             HHHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECC-CCeEEEEECCcEEEeCC
Confidence            346667777777889999999999999765 3333 344443322 36567889999999995

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=94.30  E-value=0.31  Score=60.25  Aligned_cols=62  Identities=13%  Similarity=0.034  Sum_probs=41.5

Q ss_pred             CHHHHHHHHHHHHh-CCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927        947 DGEVAKQFQRILGK-QGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus       947 ~~~~~~~~~~~l~~-~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
                      +..+...+.+.+.+ .||+++.++.+.++..+++. +.+...+.. +++...+.++.||+|+|--
T Consensus       136 G~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~-~g~~~~i~Ak~VIlATGG~  199 (577)
T PRK06069        136 GFYIMHTLYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLK-RGEFKVFQAKAGIIATGGA  199 (577)
T ss_pred             hHHHHHHHHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcC-CCeEEEEECCcEEEcCchh
Confidence            34466666666655 69999999999998754443 334333311 2444578999999999864

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=94.24  E-value=0.24  Score=57.97  Aligned_cols=64  Identities=28%  Similarity=0.402  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEec--CCe---EEEEEeeccCCCCceEEE---cCEEEEccCCcccCCc
Q psy14927        948 GEVAKQFQRILGKQGMQFKLGTKVTGASKS--GDN---ITVTIENVKDPTKKEELS---CDALLVCVGRRPYTHN 1014 (1074)
Q Consensus       948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~--~~~---~~v~~~~~~~~g~~~~i~---~D~vi~a~G~~p~~~~ 1014 (1074)
                      +.+...+.+.|+++||.|.++++|+.|.-+  ++.   ..+.+..   +|+...|+   -|.||+..|..-....
T Consensus       207 eSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~---~g~~~~i~l~~~DlV~vT~GS~t~~s~  278 (500)
T PF06100_consen  207 ESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQ---DGKEETIDLGPDDLVFVTNGSMTEGST  278 (500)
T ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEc---CCCeeEEEeCCCCEEEEECCccccccc
Confidence            567778889999999999999999998743  222   2344443   45555554   7999999997654443

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=94.24  E-value=0.31  Score=58.66  Aligned_cols=54  Identities=17%  Similarity=0.298  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHh----CC--CEEEeCceEEEEEecCC-eEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927        949 EVAKQFQRILGK----QG--MQFKLGTKVTGASKSGD-NITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus       949 ~~~~~~~~~l~~----~g--V~i~~~~~v~~i~~~~~-~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
                      .+...+.+.+++    .|  |++++++.|+.|...++ ...|++.+      + ++.+|.||+|+|.-
T Consensus       212 ~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~------G-~i~A~~VVvaAG~~  272 (497)
T PTZ00383        212 KLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNR------G-EIRARFVVVSACGY  272 (497)
T ss_pred             HHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECC------C-EEEeCEEEECcChh
Confidence            566777777887    77  88999999999987633 34554332      2 69999999999854

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=94.19  E-value=0.068  Score=61.70  Aligned_cols=88  Identities=16%  Similarity=-0.035  Sum_probs=54.4

Q ss_pred             hhhhhhccccchHHHHHHHhh------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEe
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKIT  867 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~i  867 (1074)
                      ++|||||+|+.|+.+|..+..      ++++..+.          ..      ..........+...||+++++ .++.+
T Consensus       173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~----------~~------~~~~~~~~~~l~~~gi~i~~~~~v~~i  236 (352)
T PRK12770        173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI----------NE------APAGKYEIERLIARGVEFLELVTPVRI  236 (352)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch----------hh------CCCCHHHHHHHHHcCCEEeeccCceee
Confidence            349999999999999988865      22221110          00      001112334577789999998 45555


Q ss_pred             cCCe-E-EEEe------------------CCCCeeEEEcCeEEEccCCCCC
Q psy14927        868 GPNT-V-TVIK------------------SDGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       868 d~~~-~-~v~~------------------~~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      ..+. + .|.+                  .+|...++.+|.||+|+|.+|.
T Consensus       237 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~  287 (352)
T PRK12770        237 IGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPT  287 (352)
T ss_pred             ecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCC
Confidence            4322 1 2221                  1344468999999999999984

>PRK07512 L-aspartate oxidase; Provisional

Probab=94.13  E-value=0.24  Score=60.22  Aligned_cols=151  Identities=10%  Similarity=0.040  Sum_probs=0.0

Q ss_pred             hhhhhccccchHHHHHHHhh---hhhhhccc-cccccchhh--------hhhhhhHHHhhhhhhH---------------
Q psy14927        796 VVLNTLGNCAAVQANYHLAT---KLFTQAGD-KGVKLNLET--------MMGTKSAAVKALTGGI---------------  848 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~---~l~e~~~~-~g~~~~~~~--------~~~~~~~~~~~l~~~~---------------  848 (1074)
                      +|||||||.||+.||+.++.   +++++.+. .++.-.+..        .........+++...-               
T Consensus        11 DVlVIG~G~AGl~AAl~Aa~~~V~lleK~~~~~gg~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~g~~d~~~v~~~~~~   90 (513)
T PRK07512         11 RPVIVGGGLAGLMAALKLAPRPVVVLSPAPLGEGASSAWAQGGIAAALGPDDSPALHAADTLAAGAGLCDPAVAALITAE   90 (513)
T ss_pred             CEEEECchHHHHHHHHHhCcCCEEEEECCCCCCCcchHHhhhccccccCCCCCHHHHHHHHHHhhCCCCCHHHHHHHHHH


Q ss_pred             ----HHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcceechhhHhcchHhhH
Q psy14927        849 ----AHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKKGSV  924 (1074)
Q Consensus       849 ----~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t~~~~~~~~~A~~  924 (1074)
                          .+++.+.||.|-..     ...........|    -.+..++-..|...                           
T Consensus        91 s~~~i~wL~~~Gv~f~~~-----~~G~~~~~~~~~----~~~~r~~~~~g~~~---------------------------  134 (513)
T PRK07512         91 APAAIEDLLRLGVPFDRD-----ADGRLALGLEAA----HSRRRIVHVGGDGA---------------------------  134 (513)
T ss_pred             HHHHHHHHHHhCCccccC-----CCCccccccccC----ccCCcEEEcCCCCC---------------------------


Q ss_pred             HhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhC-CCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEcCEE
Q psy14927        925 WGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQ-GMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDAL 1002 (1074)
Q Consensus       925 l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~-gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D~v 1002 (1074)
                                            +..+...+.+.+.+. ||+++.++.+.++..+++. +.+...+   ++....+.++.|
T Consensus       135 ----------------------G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~---~~~~~~i~Ak~V  189 (513)
T PRK07512        135 ----------------------GAAIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAAT---AGGPVVLPARAV  189 (513)
T ss_pred             ----------------------HHHHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEe---CCeEEEEECCEE


Q ss_pred             EEccC
Q psy14927       1003 LVCVG 1007 (1074)
Q Consensus      1003 i~a~G 1007 (1074)
                      |+|+|
T Consensus       190 VLATG  194 (513)
T PRK07512        190 VLATG  194 (513)
T ss_pred             EEcCC

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=94.06  E-value=0.085  Score=63.00  Aligned_cols=88  Identities=11%  Similarity=0.018  Sum_probs=53.4

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEec
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITG  868 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id  868 (1074)
                      ++|||||||..|+.+|..+.+     +++......       .++..         ....+.+...||+|+++ .++.+.
T Consensus       273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~-------~~~~~---------~~~~~~l~~~GV~~~~~~~~~~i~  336 (449)
T TIGR01316       273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTRE-------DMTAR---------VEEIAHAEEEGVKFHFLCQPVEII  336 (449)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcc-------cCCCC---------HHHHHHHHhCCCEEEeccCcEEEE
Confidence            459999999999999999987     333322210       01100         11224466789999987 344442


Q ss_pred             --C-CeE-EEEeC---------C---------CCeeEEEcCeEEEccCCCCC
Q psy14927        869 --P-NTV-TVIKS---------D---------GSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       869 --~-~~~-~v~~~---------~---------G~~~~i~~d~lIIATG~~p~  898 (1074)
                        . +.+ .|.+.         +         |+..++.+|.||+|+|..|.
T Consensus       337 ~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~  388 (449)
T TIGR01316       337 GDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSN  388 (449)
T ss_pred             EcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCC
Confidence              1 222 12221         2         22347999999999999874

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=94.06  E-value=0.087  Score=63.35  Aligned_cols=98  Identities=12%  Similarity=-0.090  Sum_probs=52.7

Q ss_pred             hhhhhhccccchHHHHHHHhh------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEe
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKIT  867 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~i  867 (1074)
                      ++|+|||||+.|+.+|..+.+      ++++......... ..  ..........   ...+.+.+.||+++++ .++.+
T Consensus       282 k~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~-~~--~~~~~~~~~~---~~~~~~~~~GV~i~~~~~~~~i  355 (471)
T PRK12810        282 KHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRR-NK--NNPWPYWPMK---LEVSNAHEEGVEREFNVQTKEF  355 (471)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCcccc-cc--ccCCcccchH---HHHHHHHHcCCeEEeccCceEE
Confidence            349999999999999987766      1111111000000 00  0000000000   0234456779999998 45555


Q ss_pred             cC--CeEE-EE-----eC-------CCCeeEEEcCeEEEccCCCCC
Q psy14927        868 GP--NTVT-VI-----KS-------DGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       868 d~--~~~~-v~-----~~-------~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      ..  +.++ |.     ..       .|+..++.+|.||+|+|..|.
T Consensus       356 ~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~  401 (471)
T PRK12810        356 EGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGP  401 (471)
T ss_pred             EccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCC
Confidence            42  2221 21     11       234468999999999998874

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=94.05  E-value=0.71  Score=47.22  Aligned_cols=89  Identities=18%  Similarity=0.176  Sum_probs=60.3

Q ss_pred             HHHHHHHhhcCCC---hHHHHHHHHHHHhccCHHHHHHHHHHhhC-----------hhhhhhHhhccCCHHHHHHHHHh-
Q psy14927         37 TDKLEKYIIQSKD---PVLLKWWAQYIESTEDMDLAMKYYEEARD-----------YLSMVRVLCFLQDFSRAAELANA-  101 (1074)
Q Consensus        37 ~~~~~~~~~~~~~---~~l~~~~a~~~e~~~~~~~A~~~y~~a~d-----------~~~~vr~l~~~~~~~~a~~i~~~-  101 (1074)
                      ++....+.+...+   ...+..+|..+...|++++|..+|.++=.           +..+..++..+|++++|.+..++ 
T Consensus        19 ~~~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a   98 (172)
T PRK02603         19 ADLILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQA   98 (172)
T ss_pred             HHHHHHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3444444443322   33567779999999999999999998742           33444557888999998887662 


Q ss_pred             ----cCChHHHHHHHHHHHhcCChHHHH
Q psy14927        102 ----SGDTAAAYHLARQYENSGQFDEAI  125 (1074)
Q Consensus       102 ----~~~~~~~~~la~~~~~~g~~~~Ai  125 (1074)
                          +.+..+...+|..|...|+...|.
T Consensus        99 l~~~p~~~~~~~~lg~~~~~~g~~~~a~  126 (172)
T PRK02603         99 LELNPKQPSALNNIAVIYHKRGEKAEEA  126 (172)
T ss_pred             HHhCcccHHHHHHHHHHHHHcCChHhHh
Confidence                345666667787777766654433

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=94.01  E-value=0.31  Score=60.24  Aligned_cols=61  Identities=11%  Similarity=0.152  Sum_probs=39.0

Q ss_pred             CHHHHHHHHHHHHhCC----CEEEeCceEEEEEec-CCe-EEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927        947 DGEVAKQFQRILGKQG----MQFKLGTKVTGASKS-GDN-ITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus       947 ~~~~~~~~~~~l~~~g----V~i~~~~~v~~i~~~-~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
                      +..+...+.+.+++.+    |+++.++.+..+..+ ++. +.|...+.. +++...+.++.||+|||-
T Consensus       132 G~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~-~g~~~~i~AkaVILATGG  198 (589)
T PRK08641        132 GQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDLF-TMEIESFPADAVIMATGG  198 (589)
T ss_pred             HHHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEECC-CCcEEEEECCEEEECCCC
Confidence            3445555655555433    889999988887653 232 445554422 344457889999999984

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=93.88  E-value=3.3  Score=50.28  Aligned_cols=139  Identities=18%  Similarity=0.101  Sum_probs=68.6

Q ss_pred             hhccCCHHHHHHHHHh--cCChHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHH
Q psy14927         86 LCFLQDFSRAAELANA--SGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQI  163 (1074)
Q Consensus        86 l~~~~~~~~a~~i~~~--~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~  163 (1074)
                      .|...-++.+..+.|=  ..-..-...-|.+....+...+|-.+|-.-|++.||+..-++.+||.+-++++.+..+.+..
T Consensus       901 i~~hdly~~~l~lyrYd~e~Qk~~~nifa~~l~~n~~~~~aa~aye~~gK~~Ea~gay~sA~mwrec~si~~q~~~~e~~  980 (1243)
T COG5290         901 ICRHDLYDFLLLLYRYDGELQKFKINIFAGNLVDNLYHISAAKAYEVEGKYIEAHGAYDSALMWRECGSISTQEKGYEFN  980 (1243)
T ss_pred             HHhccchHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhcchHHH
Confidence            4444455555555441  11111233444555555555666666666666666666666666666666666555554444


Q ss_pred             HHHHHHccCChhHHHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHH
Q psy14927        164 EAATYLETIEPDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYV  237 (1074)
Q Consensus       164 ~~A~~~e~~~~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~  237 (1074)
                      ..|+.+-+.    +.-.+.|+|+-.+++..++..       .+|--||-|  |......++..|-.+|..+++.
T Consensus       981 ~~AE~L~S~----l~ve~R~~~da~~i~l~yl~N-------~~eava~~c--kgs~y~ea~~~a~~s~~~e~~k 1041 (1243)
T COG5290         981 LCAELLPSD----LLVEFRKAGDAEKILLTYLEN-------LYEAVAMDC--KGSEYREAFCEAMVSRLVESEK 1041 (1243)
T ss_pred             HHHHhhhhh----HHHHHHHhcCHHHHHHHHHhC-------HHHHHHHHc--ccccchHHHHHHHHhhhhhHHH
Confidence            555544332    333445555555555555542       123333333  2233344455555566656554

>KOG2404|consensus

Probab=93.79  E-value=0.23  Score=54.13  Aligned_cols=85  Identities=20%  Similarity=0.255  Sum_probs=57.6

Q ss_pred             hHHhhc-CCcEEEEecCCccCCCCCCHHHHHHHHHHHHhC------CCEEEeCceEEEEEecCCe-EEEEEeeccCCCCc
Q psy14927        923 SVWGRL-GAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQ------GMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKK  994 (1074)
Q Consensus       923 ~~l~~~-G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~------gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~  994 (1074)
                      ..+.++ |+.|-=-+|+...++|.+  ++...+...+++.      -+++..+++|+.|.++.+. ..|++.+.  +|+.
T Consensus       115 d~la~lgGHSvpRTHr~s~plppgf--ei~~~L~~~l~k~as~~pe~~ki~~nskvv~il~n~gkVsgVeymd~--sgek  190 (477)
T KOG2404|consen  115 DLLAQLGGHSVPRTHRSSGPLPPGF--EIVKALSTRLKKKASENPELVKILLNSKVVDILRNNGKVSGVEYMDA--SGEK  190 (477)
T ss_pred             HHHHHhcCCCCCcccccCCCCCCch--HHHHHHHHHHHHhhhcChHHHhhhhcceeeeeecCCCeEEEEEEEcC--CCCc
Confidence            334455 566655668877774443  3455555555442      4889999999999976555 45666664  4777


Q ss_pred             eEEEcCEEEEccCCccc
Q psy14927        995 EELSCDALLVCVGRRPY 1011 (1074)
Q Consensus       995 ~~i~~D~vi~a~G~~p~ 1011 (1074)
                      ..+.+|.|++|+|--..
T Consensus       191 ~~~~~~~VVlatGGf~y  207 (477)
T KOG2404|consen  191 SKIIGDAVVLATGGFGY  207 (477)
T ss_pred             cceecCceEEecCCcCc
Confidence            88999999999985443

>KOG0029|consensus

Probab=93.77  E-value=0.023  Score=68.04  Aligned_cols=36  Identities=14%  Similarity=0.163  Sum_probs=32.5

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccc
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLN  829 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~  829 (1074)
                      +++|+|||||+|||+||++|..     +++|..++.||.+.
T Consensus        15 ~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~   55 (501)
T KOG0029|consen   15 KKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIY   55 (501)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeE
Confidence            5569999999999999999999     89999999999763

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=93.64  E-value=0.85  Score=54.56  Aligned_cols=64  Identities=20%  Similarity=0.258  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHhCCCE--EEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccC--CcccCC
Q psy14927        948 GEVAKQFQRILGKQGMQ--FKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVG--RRPYTH 1013 (1074)
Q Consensus       948 ~~~~~~~~~~l~~~gV~--i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G--~~p~~~ 1013 (1074)
                      .++.+++.+..+..|+.  +.++++|..|+..+++..|++.+.  ++...+..+|.||+|+|  ..|+..
T Consensus       111 ~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~--~~~~~~~~~d~VIvAtG~~~~P~~P  178 (461)
T PLN02172        111 REVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNS--GGFSKDEIFDAVVVCNGHYTEPNVA  178 (461)
T ss_pred             HHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcC--CCceEEEEcCEEEEeccCCCCCcCC
Confidence            56777888888888988  899999999998766667776541  12234678999999999  466644

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=93.60  E-value=0.083  Score=62.85  Aligned_cols=60  Identities=17%  Similarity=0.214  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927        949 EVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus       949 ~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
                      .+.-.......++|-+++..++|+.+..+++...|++.|.. +|+..++.++.||.|+|.-
T Consensus       165 RLv~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~-tg~~~~ira~~VVNAaGpW  224 (532)
T COG0578         165 RLVAANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRE-TGETYEIRARAVVNAAGPW  224 (532)
T ss_pred             HHHHHHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecC-CCcEEEEEcCEEEECCCcc
Confidence            34444455667889999999999999988775678887765 7888899999999999953

>KOG2820|consensus

Probab=93.53  E-value=0.13  Score=56.69  Aligned_cols=48  Identities=23%  Similarity=0.290  Sum_probs=37.5

Q ss_pred             HHHHhhhCCeEEEeee-EEEec-----CCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        848 IAHLFKSNKVTQLNGH-GKITG-----PNTVTVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       848 ~~~~l~~~gV~~~~g~-v~~id-----~~~~~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                      ++..++..|+.|+.|+ |+.+.     ...+.|.+.+|  ..+.++.+|+++|++-
T Consensus       159 ~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~g--s~Y~akkiI~t~GaWi  212 (399)
T KOG2820|consen  159 LQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDG--SIYHAKKIIFTVGAWI  212 (399)
T ss_pred             HHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccC--CeeecceEEEEecHHH
Confidence            6677788899999994 55443     24567778888  5699999999999974

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=93.47  E-value=0.15  Score=42.66  Aligned_cols=53  Identities=28%  Similarity=0.414  Sum_probs=43.8

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhh
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEAR   77 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~   77 (1074)
                      .+.+.|++++|+..|++.-...                    ++++..|.++|..+...|++++|+.+|.++-
T Consensus         6 ~~~~~g~~~~A~~~~~~~l~~~--------------------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~   58 (65)
T PF13432_consen    6 ALYQQGDYDEAIAAFEQALKQD--------------------PDNPEAWYLLGRILYQQGRYDEALAYYERAL   58 (65)
T ss_dssp             HHHHCTHHHHHHHHHHHHHCCS--------------------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHC--------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4677889999999998877444                    3458899999999999999999999998863

>PRK12831 putative oxidoreductase; Provisional

Probab=93.42  E-value=0.14  Score=61.49  Aligned_cols=88  Identities=15%  Similarity=0.081  Sum_probs=51.6

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeee-EEEec
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGH-GKITG  868 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~-v~~id  868 (1074)
                      ++|+|||||..|+.+|..+.+     +++.....       ..++...    .+     .+.+...||+|+++. ++.+.
T Consensus       282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~-------~~m~a~~----~e-----~~~a~~eGV~i~~~~~~~~i~  345 (464)
T PRK12831        282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSE-------EELPARV----EE-----VHHAKEEGVIFDLLTNPVEIL  345 (464)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCc-------ccCCCCH----HH-----HHHHHHcCCEEEecccceEEE
Confidence            459999999999999999988     23322111       0111111    11     123456799999873 33332


Q ss_pred             --CC-eEE-EEe---------C---------CCCeeEEEcCeEEEccCCCCC
Q psy14927        869 --PN-TVT-VIK---------S---------DGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       869 --~~-~~~-v~~---------~---------~G~~~~i~~d~lIIATG~~p~  898 (1074)
                        .+ .++ |.+         .         +|+..++.+|.||+|+|..|.
T Consensus       346 ~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~  397 (464)
T PRK12831        346 GDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPN  397 (464)
T ss_pred             ecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCC
Confidence              11 111 111         0         233347999999999999874

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=93.38  E-value=0.29  Score=60.40  Aligned_cols=61  Identities=8%  Similarity=-0.026  Sum_probs=42.8

Q ss_pred             CHHHHHHHHHHHHhCCCEEEeCceEEEEEec-CCe-EEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927        947 DGEVAKQFQRILGKQGMQFKLGTKVTGASKS-GDN-ITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus       947 ~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~-~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
                      ...+...+.+...+.||+++.++.+.++..+ ++. +.+...+.. +|+...+.+..||+|||-
T Consensus       142 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~-~g~~~~i~AkaVILATGG  204 (588)
T PRK08958        142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIE-TGEVVYFKARATVLATGG  204 (588)
T ss_pred             HHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcC-CCcEEEEEcCeEEECCCC
Confidence            3556666767777889999999999998753 333 444443322 355667899999999874

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=93.38  E-value=0.38  Score=42.62  Aligned_cols=69  Identities=26%  Similarity=0.368  Sum_probs=47.8

Q ss_pred             hhcHHHHHHHHHHh-----hCHHH-----HHHHHHHcCCHHHHHHHHHh----cCCcHHHHHHHHHHHhcCCHHHHHHHH
Q psy14927        637 TEDMDLAMKYYEEA-----RDYLS-----MVRVLCFLQDFSRAAELANA----SGDTAAAYHLARQYENSGQFDEAIHFY  702 (1074)
Q Consensus       637 ~~~~~~A~~~y~~a-----g~~~~-----ai~~~~~~~~~~~a~~v~~~----~~~~~~~~~~A~~~~~~g~~~~A~~~~  702 (1074)
                      +|+|+.|+.+|.+.     .+++.     -..||...++|++|+++++.    .........+|+-|.+.|+|++|++.|
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l   81 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL   81 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            56788888877765     12222     25668999999999999843    222344447799999999999999998


Q ss_pred             HHc
Q psy14927        703 SVA  705 (1074)
Q Consensus       703 ~ka  705 (1074)
                      -++
T Consensus        82 ~~~   84 (84)
T PF12895_consen   82 EKA   84 (84)
T ss_dssp             HHH
T ss_pred             hcC
Confidence            764

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=93.36  E-value=2.1  Score=49.10  Aligned_cols=51  Identities=14%  Similarity=0.122  Sum_probs=24.9

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHhhChh------------hhhhHhhccCCHHHHHHHHH
Q psy14927         50 PVLLKWWAQYIESTEDMDLAMKYYEEARDYL------------SMVRVLCFLQDFSRAAELAN  100 (1074)
Q Consensus        50 ~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~------------~~vr~l~~~~~~~~a~~i~~  100 (1074)
                      +..+..+|..+...|++++|..+|.++-+..            .+.+++...|++++|.++.+
T Consensus       148 ~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~  210 (355)
T cd05804         148 AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYD  210 (355)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            4444555555555555555555555432210            23344455555555555544

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=93.36  E-value=0.85  Score=45.18  Aligned_cols=83  Identities=10%  Similarity=0.061  Sum_probs=59.0

Q ss_pred             hHHHHHHHHHHHHhhhcHHHHHHHHHHh-----hCH---HHHHHHHHHcCCHHHHHHHHH-----hcCCcHHHHHHHHHH
Q psy14927        623 YRVLLKWWAQYIESTEDMDLAMKYYEEA-----RDY---LSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQY  689 (1074)
Q Consensus       623 ~~~l~~~~a~~~e~~~~~~~A~~~y~~a-----g~~---~~ai~~~~~~~~~~~a~~v~~-----~~~~~~~~~~~A~~~  689 (1074)
                      +|..+...|..+...|+|++|..+|.++     .++   -..-.++...+++++|....+     ..+.......+|..+
T Consensus        23 ~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l  102 (144)
T PRK15359         23 DPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCL  102 (144)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence            4555667788888899999999999876     222   223334677788888886663     334455555888888


Q ss_pred             HhcCCHHHHHHHHHHc
Q psy14927        690 ENSGQFDEAIHFYSVA  705 (1074)
Q Consensus       690 ~~~g~~~~A~~~~~ka  705 (1074)
                      ...|++++|+..|.++
T Consensus       103 ~~~g~~~eAi~~~~~A  118 (144)
T PRK15359        103 KMMGEPGLAREAFQTA  118 (144)
T ss_pred             HHcCCHHHHHHHHHHH
Confidence            8888888888888655

>KOG2114|consensus

Probab=93.35  E-value=2.2  Score=52.30  Aligned_cols=120  Identities=17%  Similarity=0.145  Sum_probs=66.9

Q ss_pred             cHHHHHHHhhcCCC-----hHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHH--h---cCCh
Q psy14927         36 NTDKLEKYIIQSKD-----PVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELAN--A---SGDT  105 (1074)
Q Consensus        36 ~~~~~~~~~~~~~~-----~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~--~---~~~~  105 (1074)
                      .+..+-++..+...     .++++.||.++..+|++++|...|.++=++..--.+..+-=+.++-.++.+  +   .++.
T Consensus       349 ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YLe~L~~~gl  428 (933)
T KOG2114|consen  349 LYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSYLEALHKKGL  428 (933)
T ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHHHHHHHHccc
Confidence            34444455444322     459999999999999999999999998777555544333223333333322  1   1111


Q ss_pred             HH---HHHHHHHHHhcCChHHHHHHHHHhC------ChHHHHHHHHHhCchHHHHHHhh
Q psy14927        106 AA---AYHLARQYENSGQFDEAIHFYSVAG------SCGNAVRLCKEQALDDQLWNLAL  155 (1074)
Q Consensus       106 ~~---~~~la~~~~~~g~~~~Ai~~y~~a~------~~~~A~~la~~~~~~~~~~~l~~  155 (1074)
                      +.   -..|-..|.+.+|.+.--+|-.+.-      ..+.||++|++.|..++..-||.
T Consensus       429 a~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~  487 (933)
T KOG2114|consen  429 ANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLAT  487 (933)
T ss_pred             ccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence            11   1233355566666555555444333      35555665555555555554443

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=93.34  E-value=2.1  Score=53.10  Aligned_cols=141  Identities=19%  Similarity=0.160  Sum_probs=76.5

Q ss_pred             HHHHHHhccCHHHHHHHHHH-hhChhhhhhH---hhccCCHHHHHHH-----HHhcCCh---HHHHHHHHHHH--hcCCh
Q psy14927         56 WAQYIESTEDMDLAMKYYEE-ARDYLSMVRV---LCFLQDFSRAAEL-----ANASGDT---AAAYHLARQYE--NSGQF  121 (1074)
Q Consensus        56 ~a~~~e~~~~~~~A~~~y~~-a~d~~~~vr~---l~~~~~~~~a~~i-----~~~~~~~---~~~~~la~~~~--~~g~~  121 (1074)
                      |.+.+.=.|+|+.|.++-.+ ......+|.+   |...|-+.-....     ..++++.   .-+..+.+|..  +..|.
T Consensus       264 Yf~~LlLtgqFE~AI~~L~~~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~~td~  343 (613)
T PF04097_consen  264 YFQVLLLTGQFEAAIEFLYRNEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFEITDP  343 (613)
T ss_dssp             HHHHHHHTT-HHHHHHHHHT--T-HHHHHHHHHHHHHTT------------------------HHHHHHHHHHTTTTT-H
T ss_pred             HHHHHHHHhhHHHHHHHHHhhccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHhccCH
Confidence            34666668999999988777 5555667777   5555554333331     1122222   23455555544  56788


Q ss_pred             HHHHHHHHHhCChHH--HHH--------HHHHhCchHHHHH------------------HhhhcC-c----hhHHHHHHH
Q psy14927        122 DEAIHFYSVAGSCGN--AVR--------LCKEQALDDQLWN------------------LALSAG-P----SEQIEAATY  168 (1074)
Q Consensus       122 ~~Ai~~y~~a~~~~~--A~~--------la~~~~~~~~~~~------------------l~~~~~-~----~~~~~~A~~  168 (1074)
                      .+|++||.....+..  -.+        |+-+-..++.++.                  |..-.. +    +....+|.-
T Consensus       344 ~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~~A~~  423 (613)
T PF04097_consen  344 REALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQAARE  423 (613)
T ss_dssp             HHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHHHHHH
Confidence            999999998877653  112        2222222232321                  110111 1    334458888


Q ss_pred             Hcc-CChhHHHHHHHHhCChHHHHHHHHh
Q psy14927        169 LET-IEPDKAVLLYHKAGALHKALDLAFK  196 (1074)
Q Consensus       169 ~e~-~~~~~A~~ly~kaG~~~kAl~l~~~  196 (1074)
                      .|+ |.++.|+.||+.||++.++++++-+
T Consensus       424 ~e~~g~~~dAi~Ly~La~~~d~vl~lln~  452 (613)
T PF04097_consen  424 AEERGRFEDAILLYHLAEEYDKVLSLLNR  452 (613)
T ss_dssp             HHHCT-HHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHhhHHHHHHHHHH
Confidence            888 6799999999999999999999877

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>KOG0548|consensus

Probab=93.34  E-value=2.1  Score=50.13  Aligned_cols=77  Identities=19%  Similarity=0.295  Sum_probs=48.0

Q ss_pred             HHHHHHHhccCHHHHHHHHHHhhChh-------hhhhHhhccCCHHHHHHHHHhc---C--ChHHHHH-------HHHHH
Q psy14927         55 WWAQYIESTEDMDLAMKYYEEARDYL-------SMVRVLCFLQDFSRAAELANAS---G--DTAAAYH-------LARQY  115 (1074)
Q Consensus        55 ~~a~~~e~~~~~~~A~~~y~~a~d~~-------~~vr~l~~~~~~~~a~~i~~~~---~--~~~~~~~-------la~~~  115 (1074)
                      ..|.......++..|+++|..+=+.+       +..-++...|.+.+....+...   +  .++-.+.       +|.-|
T Consensus       229 ~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~  308 (539)
T KOG0548|consen  229 ELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAY  308 (539)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhh
Confidence            45778888999999999998864443       3333355555554444443321   1  1122222       33466


Q ss_pred             HhcCChHHHHHHHHHh
Q psy14927        116 ENSGQFDEAIHFYSVA  131 (1074)
Q Consensus       116 ~~~g~~~~Ai~~y~~a  131 (1074)
                      .+.|+++-||++|.++
T Consensus       309 ~k~~~~~~ai~~~~ka  324 (539)
T KOG0548|consen  309 TKREDYEGAIKYYQKA  324 (539)
T ss_pred             hhHHhHHHHHHHHHHH
Confidence            6788999999999983

>PRK14574 hmsH outer membrane protein; Provisional

Probab=93.27  E-value=29  Score=44.59  Aligned_cols=139  Identities=12%  Similarity=0.069  Sum_probs=91.1

Q ss_pred             hhcCCHHHHHHHHHHcCcccchhh-------hHh--hhcHHHHHHHhhcC-----CChHHHHHHHHHHHhccCHHHHHHH
Q psy14927          7 MKNGDIDRAIRMFEKAETHQQHVP-------RML--LENTDKLEKYIIQS-----KDPVLLKWWAQYIESTEDMDLAMKY   72 (1074)
Q Consensus         7 ~~~g~~~eA~~~Ye~~~~~~~~~~-------~~~--~~~~~~~~~~~~~~-----~~~~l~~~~a~~~e~~~~~~~A~~~   72 (1074)
                      -++|++++|...|+++...+..-+       .++  .+++.++..+..+.     .+.......|+.+...|+|+.|++.
T Consensus        45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiel  124 (822)
T PRK14574         45 ARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALAL  124 (822)
T ss_pred             HhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            467999999999999997776642       222  25677777776663     3344666668899999999999999


Q ss_pred             HHHhhCh--------hhhhhHhhccCCHHHHHHHHHh--cCChHHH--HHHHHHHHhcCChHHHHHHHHH----------
Q psy14927         73 YEEARDY--------LSMVRVLCFLQDFSRAAELANA--SGDTAAA--YHLARQYENSGQFDEAIHFYSV----------  130 (1074)
Q Consensus        73 y~~a~d~--------~~~vr~l~~~~~~~~a~~i~~~--~~~~~~~--~~la~~~~~~g~~~~Ai~~y~~----------  130 (1074)
                      |.++=..        ..++.++...++.++|.+.++.  ..+....  ..++..+...++..+|++.|.+          
T Consensus       125 y~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e  204 (822)
T PRK14574        125 WQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEE  204 (822)
T ss_pred             HHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHH
Confidence            9985322        2344557788999999988873  2233222  3333344334444445555544          


Q ss_pred             -----------hCChHHHHHHHHHhC
Q psy14927        131 -----------AGSCGNAVRLCKEQA  145 (1074)
Q Consensus       131 -----------a~~~~~A~~la~~~~  145 (1074)
                                 .|...-|.+++++|-
T Consensus       205 ~~~~~~~~l~~~~~~~~a~~l~~~~p  230 (822)
T PRK14574        205 VLKNHLEILQRNRIVEPALRLAKENP  230 (822)
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHhCc
Confidence                       556666777777664

>PRK12839 hypothetical protein; Provisional

Probab=93.26  E-value=0.68  Score=57.01  Aligned_cols=60  Identities=10%  Similarity=0.181  Sum_probs=40.5

Q ss_pred             CHHHHHHHHHHHHhCCCEEEeCceEEEEEec-CC-eEEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927        947 DGEVAKQFQRILGKQGMQFKLGTKVTGASKS-GD-NITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus       947 ~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~-~~-~~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
                      +..+...+.+...+.||+++.++.++++..+ ++ .+.|.+.+.  +++...+.++.||+|+|-
T Consensus       213 g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~--~g~~~i~aak~VVLAtGG  274 (572)
T PRK12839        213 GTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGP--DGAVTVEATRGVVLATGG  274 (572)
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeC--CCcEEEEeCCEEEEcCCC
Confidence            4455666777788899999999999998643 23 345555441  233334455899999974

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=93.24  E-value=0.26  Score=56.87  Aligned_cols=45  Identities=24%  Similarity=0.358  Sum_probs=35.5

Q ss_pred             HHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927        958 LGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus       958 l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
                      .++.|=.|..+..|.+|..++++|+|+..+      ..+..+|.+|+++..
T Consensus       216 a~ql~~~I~~~~~V~rI~q~~~gV~Vt~~~------~~~~~ad~~i~tiPl  260 (450)
T COG1231         216 AKQLGTRILLNEPVRRIDQDGDGVTVTADD------VGQYVADYVLVTIPL  260 (450)
T ss_pred             HHHhhceEEecCceeeEEEcCCeEEEEeCC------cceEEecEEEEecCH
Confidence            344566788889999999988888887654      357999999998753

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=93.23  E-value=1.2  Score=53.74  Aligned_cols=163  Identities=18%  Similarity=0.259  Sum_probs=102.9

Q ss_pred             CHHHHHHHHHHcCcccchhhhHhh------hcH-------HHHHHHhhc--------------CCCh--HHHHHH--HHH
Q psy14927         11 DIDRAIRMFEKAETHQQHVPRMLL------ENT-------DKLEKYIIQ--------------SKDP--VLLKWW--AQY   59 (1074)
Q Consensus        11 ~~~eA~~~Ye~~~~~~~~~~~~~~------~~~-------~~~~~~~~~--------------~~~~--~l~~~~--a~~   59 (1074)
                      .|.+.+..|-...- ..-||.+|.      .+.       ..+..|+.+              .++|  -||.++  |+.
T Consensus       125 ~F~~~~~~yl~~~l-~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqh  203 (517)
T PF12569_consen  125 EFKERLDEYLRPQL-RKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQH  203 (517)
T ss_pred             HHHHHHHHHHHHHH-hcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHH
Confidence            46667777776663 336777763      222       234444433              1123  367777  999


Q ss_pred             HHhccCHHHHHHHHHHhhCh--------hhhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHHHHHhcCChHHHHH
Q psy14927         60 IESTEDMDLAMKYYEEARDY--------LSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLARQYENSGQFDEAIH  126 (1074)
Q Consensus        60 ~e~~~~~~~A~~~y~~a~d~--------~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~~~~~~g~~~~Ai~  126 (1074)
                      +...|++++|+++..+|=+.        .-..|||-+.|++.+|.+....     +.|+-.....++++.+.|++++|.+
T Consensus       204 yd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~  283 (517)
T PF12569_consen  204 YDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEK  283 (517)
T ss_pred             HHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHH
Confidence            99999999999999986543        5567888899999999887664     4455566666677666666666654


Q ss_pred             HHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHccCChhHHHHHHHHhCChHHHHHHHHhh
Q psy14927        127 FYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLETIEPDKAVLLYHKAGALHKALDLAFKL  197 (1074)
Q Consensus       127 ~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~~~~~A~~ly~kaG~~~kAl~l~~~~  197 (1074)
                      ....--+-+.                   +........=.-||+    .+.++.|.+.|++..||+.+...
T Consensus       284 ~~~~Ftr~~~-------------------~~~~~L~~mQc~Wf~----~e~a~a~~r~~~~~~ALk~~~~v  331 (517)
T PF12569_consen  284 TASLFTREDV-------------------DPLSNLNDMQCMWFE----TECAEAYLRQGDYGLALKRFHAV  331 (517)
T ss_pred             HHHhhcCCCC-------------------CcccCHHHHHHHHHH----HHHHHHHHHHhhHHHHHHHHHHH
Confidence            3222111110                   000111112234554    45688999999999999998764

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=93.21  E-value=0.62  Score=57.23  Aligned_cols=60  Identities=8%  Similarity=0.160  Sum_probs=42.8

Q ss_pred             CCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEc-CEEEEccCC
Q psy14927        946 IDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSC-DALLVCVGR 1008 (1074)
Q Consensus       946 ~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~-D~vi~a~G~ 1008 (1074)
                      ....+...+.+.+++.||++++++.++++..+++. +.|...+   +++...+.+ ..||+|+|-
T Consensus       215 ~G~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~---~g~~~~i~a~kaVILAtGG  276 (564)
T PRK12845        215 GGQALAAGLFAGVLRAGIPIWTETSLVRLTDDGGRVTGAVVDH---RGREVTVTARRGVVLAAGG  276 (564)
T ss_pred             ChHHHHHHHHHHHHHCCCEEEecCEeeEEEecCCEEEEEEEEE---CCcEEEEEcCCEEEEecCC
Confidence            34677778888888999999999999998754333 3444443   244455666 589999974

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=93.13  E-value=0.49  Score=57.65  Aligned_cols=85  Identities=14%  Similarity=0.176  Sum_probs=62.9

Q ss_pred             hhHHhhcCCcEEEEecC--CccC-----------CCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeec
Q psy14927        922 GSVWGRLGAEVTAIEFM--NAIG-----------GMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENV  988 (1074)
Q Consensus       922 A~~l~~~G~~Vtlv~~~--~~~~-----------~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~  988 (1074)
                      |..+++.|.+|++++..  ..+.           .....+++.+.+.+.+++.||+++.+++|..+..+++...+++.+ 
T Consensus       228 A~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~-  306 (515)
T TIGR03140       228 AIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLES-  306 (515)
T ss_pred             HHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECC-
Confidence            77788899999998631  1111           012346677788888899999999999999998765555565543 


Q ss_pred             cCCCCceEEEcCEEEEccCCcccC
Q psy14927        989 KDPTKKEELSCDALLVCVGRRPYT 1012 (1074)
Q Consensus       989 ~~~g~~~~i~~D~vi~a~G~~p~~ 1012 (1074)
                           +..+.+|.+|+|+|..|..
T Consensus       307 -----g~~i~~d~lIlAtGa~~~~  325 (515)
T TIGR03140       307 -----GEVLKAKSVIVATGARWRK  325 (515)
T ss_pred             -----CCEEEeCEEEECCCCCcCC
Confidence                 3479999999999998754

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=93.09  E-value=0.86  Score=46.34  Aligned_cols=60  Identities=20%  Similarity=0.134  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHH-------HHHhcCChHH
Q psy14927         51 VLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLAR-------QYENSGQFDE  123 (1074)
Q Consensus        51 ~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~-------~~~~~g~~~~  123 (1074)
                      ..|..+|..+...|++++|.++|.++=..                     .+........+|.       .+...|+++.
T Consensus        73 ~~~~~lg~~~~~~g~~~eA~~~~~~Al~~---------------------~~~~~~~~~~la~i~~~~~~~~~~~g~~~~  131 (168)
T CHL00033         73 YILYNIGLIHTSNGEHTKALEYYFQALER---------------------NPFLPQALNNMAVICHYRGEQAIEQGDSEI  131 (168)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------CcCcHHHHHHHHHHHHHhhHHHHHcccHHH
Confidence            35666677777777777777776554422                     1112233344444       4447778777


Q ss_pred             HHHHHHHh
Q psy14927        124 AIHFYSVA  131 (1074)
Q Consensus       124 Ai~~y~~a  131 (1074)
                      |+..|.++
T Consensus       132 A~~~~~~a  139 (168)
T CHL00033        132 AEAWFDQA  139 (168)
T ss_pred             HHHHHHHH
Confidence            77765544

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=93.08  E-value=0.94  Score=44.48  Aligned_cols=113  Identities=10%  Similarity=0.109  Sum_probs=78.0

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccch---h----hhHhhh-cHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHh
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQH---V----PRMLLE-NTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEA   76 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~~---~----~~~~~~-~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a   76 (1074)
                      .+++.+...+.+.+-+..-..+..   +    ..+|.+ +..++-+++.+.++.==...-++.++..+-|++|.-.|.+.
T Consensus        16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~~~~ll~~l~~~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~   95 (140)
T smart00299       16 LFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYDPQKEIERLDNKSNHYDIEKVGKLCEKAKLYEEAVELYKKD   95 (140)
T ss_pred             HHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHCHHHHHHHHHhccccCCHHHHHHHHHHcCcHHHHHHHHHhh
Confidence            456667778888777765433211   1    222222 45566666663222112233577888899999999999999


Q ss_pred             hChhhhhhH-hhccCCHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy14927         77 RDYLSMVRV-LCFLQDFSRAAELANASGDTAAAYHLARQYEN  117 (1074)
Q Consensus        77 ~d~~~~vr~-l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~  117 (1074)
                      |++..++++ +.++++++.|.+.+++.++++....+++++..
T Consensus        96 ~~~~~Al~~~l~~~~d~~~a~~~~~~~~~~~lw~~~~~~~l~  137 (140)
T smart00299       96 GNFKDAIVTLIEHLGNYEKAIEYFVKQNNPELWAEVLKALLD  137 (140)
T ss_pred             cCHHHHHHHHHHcccCHHHHHHHHHhCCCHHHHHHHHHHHHc
Confidence            999999999 55559999999999988888888888877653

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=93.08  E-value=0.4  Score=59.32  Aligned_cols=38  Identities=29%  Similarity=0.393  Sum_probs=29.9

Q ss_pred             EEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927        965 FKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus       965 i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
                      ++.+++|+.++.+++.+.+++.+      +.++.+|.||.|-|.
T Consensus       209 i~~g~~V~~I~~~~d~VtV~~~d------G~ti~aDlVVGADG~  246 (668)
T PLN02927        209 IRNESNVVDFEDSGDKVTVVLEN------GQRYEGDLLVGADGI  246 (668)
T ss_pred             EEcCCEEEEEEEeCCEEEEEECC------CCEEEcCEEEECCCC
Confidence            56788899998877777777655      357899999999885

>KOG1130|consensus

Probab=93.05  E-value=8.2  Score=43.74  Aligned_cols=19  Identities=32%  Similarity=0.478  Sum_probs=13.5

Q ss_pred             HHhhhcCCHHHHHHHHHHc
Q psy14927          4 EETMKNGDIDRAIRMFEKA   22 (1074)
Q Consensus         4 ~~~~~~g~~~eA~~~Ye~~   22 (1074)
                      |.|-.+|++..-+..|+.+
T Consensus        25 ERLck~gdcraGv~ff~aA   43 (639)
T KOG1130|consen   25 ERLCKMGDCRAGVDFFKAA   43 (639)
T ss_pred             HHHHhccchhhhHHHHHHH
Confidence            5566777777777777754

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=93.04  E-value=0.52  Score=57.43  Aligned_cols=85  Identities=11%  Similarity=0.076  Sum_probs=63.7

Q ss_pred             hhHHhhcCCcEEEEecC--CccC-----------CCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeec
Q psy14927        922 GSVWGRLGAEVTAIEFM--NAIG-----------GMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENV  988 (1074)
Q Consensus       922 A~~l~~~G~~Vtlv~~~--~~~~-----------~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~  988 (1074)
                      |..+++.|.+|+++...  ....           ....++++.+.+.+.+++.||+++.++++..+...++...|.+.+ 
T Consensus       227 A~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~-  305 (517)
T PRK15317        227 AIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELAN-  305 (517)
T ss_pred             HHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECC-
Confidence            77888899999998653  1110           012346777888889999999999999999998865555665543 


Q ss_pred             cCCCCceEEEcCEEEEccCCcccC
Q psy14927        989 KDPTKKEELSCDALLVCVGRRPYT 1012 (1074)
Q Consensus       989 ~~~g~~~~i~~D~vi~a~G~~p~~ 1012 (1074)
                           +.++.+|.||+|+|..|..
T Consensus       306 -----g~~i~a~~vViAtG~~~r~  324 (517)
T PRK15317        306 -----GAVLKAKTVILATGARWRN  324 (517)
T ss_pred             -----CCEEEcCEEEECCCCCcCC
Confidence                 3479999999999998754

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=93.00  E-value=0.52  Score=40.92  Aligned_cols=85  Identities=26%  Similarity=0.327  Sum_probs=55.6

Q ss_pred             hhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHh
Q psy14927          7 MKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVL   86 (1074)
Q Consensus         7 ~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l   86 (1074)
                      ..+|++++|+..++++-...                    ++++..+..+|..+...++++.|.++|..+-+.       
T Consensus        11 ~~~~~~~~A~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-------   63 (100)
T cd00189          11 YKLGDYDEALEYYEKALELD--------------------PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL-------   63 (100)
T ss_pred             HHHhcHHHHHHHHHHHHhcC--------------------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------
Confidence            34566666666666554222                    123456677777777777788777777665432       


Q ss_pred             hccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHhC
Q psy14927         87 CFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAG  132 (1074)
Q Consensus        87 ~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~  132 (1074)
                                    .+.+......+|..+...|++++|++.+.++-
T Consensus        64 --------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~   95 (100)
T cd00189          64 --------------DPDNAKAYYNLGLAYYKLGKYEEALEAYEKAL   95 (100)
T ss_pred             --------------CCcchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence                          11233567788899999999999998876653

>PLN02815 L-aspartate oxidase

Probab=92.94  E-value=0.4  Score=59.15  Aligned_cols=158  Identities=8%  Similarity=0.007  Sum_probs=0.0

Q ss_pred             hhhhhccccchHHHHHHHhh----hhhhhcccccc-ccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCC
Q psy14927        796 VVLNTLGNCAAVQANYHLAT----KLFTQAGDKGV-KLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPN  870 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~----~l~e~~~~~g~-~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~  870 (1074)
                      +|||||+|.||+.||+.+++    +++++.+..++ ...-..-........+.....+.+.++                 
T Consensus        31 DVlVVG~G~AGl~AAl~Aae~G~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~-----------------   93 (594)
T PLN02815         31 DFLVIGSGIAGLRYALEVAEYGTVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIV-----------------   93 (594)
T ss_pred             CEEEECccHHHHHHHHHHhhCCCEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHH-----------------


Q ss_pred             eEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcceechhhHhcchH-----hhHHhhcCCcEEEEe---------
Q psy14927        871 TVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK-----GSVWGRLGAEVTAIE---------  936 (1074)
Q Consensus       871 ~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t~~~~~~~~~-----A~~l~~~G~~Vtlv~---------  936 (1074)
                                                         .+......+-+..+.+     -.+|.++|.....-.         
T Consensus        94 -----------------------------------~g~~~~d~~lv~~~~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~  138 (594)
T PLN02815         94 -----------------------------------AGAFLCDEETVRVVCTEGPERVKELIAMGASFDHGEDGNLHLARE  138 (594)
T ss_pred             -----------------------------------hccCCCcHHHHHHHHHHHHHHHHHHHHhCCeeeecCCCCccccCC


Q ss_pred             ------cCCccCCCCCCHHHHHHHHHHHHhC-CCEEEeCceEEEEEecCC-----eEEEEEeeccCCCCceEEEcCEEEE
Q psy14927        937 ------FMNAIGGMGIDGEVAKQFQRILGKQ-GMQFKLGTKVTGASKSGD-----NITVTIENVKDPTKKEELSCDALLV 1004 (1074)
Q Consensus       937 ------~~~~~~~~~~~~~~~~~~~~~l~~~-gV~i~~~~~v~~i~~~~~-----~~~v~~~~~~~~g~~~~i~~D~vi~ 1004 (1074)
                            |.-... ......+...+.+.+.+. ||+++.++.+.++..+++     .+.+...+.. +|+...+.+..||+
T Consensus       139 gg~s~~R~~~~~-d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~-~g~~~~i~AkaVIL  216 (594)
T PLN02815        139 GGHSHHRIVHAA-DMTGREIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTR-TGEVVRFISKVTLL  216 (594)
T ss_pred             CCCccCceeecC-CCCHHHHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcC-CCeEEEEEeceEEE


Q ss_pred             ccC
Q psy14927       1005 CVG 1007 (1074)
Q Consensus      1005 a~G 1007 (1074)
                      |||
T Consensus       217 ATG  219 (594)
T PLN02815        217 ASG  219 (594)
T ss_pred             cCC

>KOG0553|consensus

Probab=92.91  E-value=0.35  Score=52.56  Aligned_cols=75  Identities=21%  Similarity=0.237  Sum_probs=49.6

Q ss_pred             HHhccCHHHHHHHHHHhhCh--------hhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhcCChHHHHH
Q psy14927         60 IESTEDMDLAMKYYEEARDY--------LSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQFDEAIH  126 (1074)
Q Consensus        60 ~e~~~~~~~A~~~y~~a~d~--------~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~g~~~~Ai~  126 (1074)
                      +...++|++|+..|.+|=.+        ++-.-.|+.||..+.|.+-|+     ++...-+..+|++-|..+|++.+|++
T Consensus        91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~  170 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIE  170 (304)
T ss_pred             HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHH
Confidence            33455555555555554333        233334666666666666555     33455677799999999999999999


Q ss_pred             HHHHhCCh
Q psy14927        127 FYSVAGSC  134 (1074)
Q Consensus       127 ~y~~a~~~  134 (1074)
                      +|.++-.+
T Consensus       171 aykKaLel  178 (304)
T KOG0553|consen  171 AYKKALEL  178 (304)
T ss_pred             HHHhhhcc
Confidence            99987553

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=92.90  E-value=0.073  Score=67.89  Aligned_cols=28  Identities=7%  Similarity=0.014  Sum_probs=24.0

Q ss_pred             hhhhhccccchHHHHHHHhh-------hhhhhccc
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-------KLFTQAGD  823 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-------~l~e~~~~  823 (1074)
                      +|+||||||+|+.+|+.|++       +++|+.+.
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            38999999999999999986       67887664

>PTZ00367 squalene epoxidase; Provisional

Probab=92.77  E-value=0.17  Score=61.95  Aligned_cols=29  Identities=14%  Similarity=0.006  Sum_probs=24.7

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhcc
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAG  822 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~  822 (1074)
                      ..+|+||||||+|+++|+.|++     +++|+.+
T Consensus        33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             CccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            4459999999999999999998     6777654

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=92.71  E-value=0.7  Score=52.05  Aligned_cols=104  Identities=22%  Similarity=0.231  Sum_probs=75.1

Q ss_pred             HHhhhcCCHHHHHHHHHHcCcc--cchh----hhHhhhcHHHHHHHhhc-----CCChHHHHHHHHHHHhccCHHHHHHH
Q psy14927          4 EETMKNGDIDRAIRMFEKAETH--QQHV----PRMLLENTDKLEKYIIQ-----SKDPVLLKWWAQYIESTEDMDLAMKY   72 (1074)
Q Consensus         4 ~~~~~~g~~~eA~~~Ye~~~~~--~~~~----~~~~~~~~~~~~~~~~~-----~~~~~l~~~~a~~~e~~~~~~~A~~~   72 (1074)
                      +.+...|..++|.++-+.+-.+  |.+.    |++-.+++..+.+.+++     +++|.|+..+|+.+..++.|.+|..+
T Consensus       271 ~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~  350 (400)
T COG3071         271 ERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEA  350 (400)
T ss_pred             HHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHH
Confidence            4577888899998888877644  3232    33333566666666665     78899999999999999999999999


Q ss_pred             HHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHH
Q psy14927         73 YEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYS  129 (1074)
Q Consensus        73 y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~  129 (1074)
                      +++|-++.           +           +...+..+|+.|+++|+...|-+.+.
T Consensus       351 leaAl~~~-----------~-----------s~~~~~~la~~~~~~g~~~~A~~~r~  385 (400)
T COG3071         351 LEAALKLR-----------P-----------SASDYAELADALDQLGEPEEAEQVRR  385 (400)
T ss_pred             HHHHHhcC-----------C-----------ChhhHHHHHHHHHHcCChHHHHHHHH
Confidence            99876651           1           44556677777777777777766544

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=92.68  E-value=0.3  Score=59.32  Aligned_cols=101  Identities=14%  Similarity=-0.005  Sum_probs=0.0

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhcccccccc-----------------chhhhhhhhhHH-------------
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL-----------------NLETMMGTKSAA-------------  840 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~-----------------~~~~~~~~~~~~-------------  840 (1074)
                      +|||||||..|+++|+.+++     .++|+.+..++.-                 ++.-......+.             
T Consensus         8 DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS~~ss~lihgG~ryl~~~~~~l~~e~l~er~~l~~~~p~~~~~   87 (508)
T PRK12266          8 DLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATSSASTKLIHGGLRYLEHYEFRLVREALAEREVLLRMAPHIIWP   87 (508)
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccccccchHHHhhhccHHHHHHHHHHHHHHHHhCCCcccc


Q ss_pred             ------------------------------------------------------------------HhhhhhhHHHHhhh
Q psy14927        841 ------------------------------------------------------------------VKALTGGIAHLFKS  854 (1074)
Q Consensus       841 ------------------------------------------------------------------~~~l~~~~~~~l~~  854 (1074)
                                                                                        ...+...+......
T Consensus        88 l~~~~~~~~~~~~~~~~~~gl~lyd~~~~~~~l~~~~~~~~~~~~~~~~L~~~l~g~~~~~dg~vd~~rl~~~l~~~A~~  167 (508)
T PRK12266         88 MRFVLPHRPHLRPAWMIRAGLFLYDHLGKRKSLPGSRGLDLGRDPAGSPLKPEITRGFEYSDCWVDDARLVVLNARDAAE  167 (508)
T ss_pred             cceEEEecccccchHHHHHHHHHHHhhcCCCCCChhhhhchhhcccCCCcchhhcEEEEEcCcccCHHHHHHHHHHHHHH


Q ss_pred             CCeEEEee-eEEEecC--CeEEEEeCC---CCeeEEEcCeEEEccCCC
Q psy14927        855 NKVTQLNG-HGKITGP--NTVTVIKSD---GSTEEVKTKNILIATGSE  896 (1074)
Q Consensus       855 ~gV~~~~g-~v~~id~--~~~~v~~~~---G~~~~i~~d~lIIATG~~  896 (1074)
                      .|++++.+ .|+.+..  +.+.|++.+   |+..++.++.||+|||.+
T Consensus       168 ~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~w  215 (508)
T PRK12266        168 RGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPW  215 (508)
T ss_pred             cCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCcc

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=92.58  E-value=0.2  Score=65.74  Aligned_cols=83  Identities=14%  Similarity=0.157  Sum_probs=55.8

Q ss_pred             hhhhhccccchHHHHHHHhh------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeee-EEEec
Q psy14927        796 VVLNTLGNCAAVQANYHLAT------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGH-GKITG  868 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~-v~~id  868 (1074)
                      +|+|||+|+.|+..|..|++      ++++..+..                    ...+...+++.||+++.+. ++.+.
T Consensus       319 ~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~--------------------~~~l~~~L~~~GV~i~~~~~v~~i~  378 (985)
T TIGR01372       319 RIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV--------------------SPEARAEARELGIEVLTGHVVAATE  378 (985)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch--------------------hHHHHHHHHHcCCEEEcCCeEEEEe
Confidence            49999999999999999987      222221110                    1113456778899999994 56665


Q ss_pred             CCe--EEEEeC--CCCeeEEEcCeEEEccCCCCC
Q psy14927        869 PNT--VTVIKS--DGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       869 ~~~--~~v~~~--~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      .+.  ..|++.  +|+..++.+|.|++++|..|.
T Consensus       379 g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pn  412 (985)
T TIGR01372       379 GGKRVSGVAVARNGGAGQRLEADALAVSGGWTPV  412 (985)
T ss_pred             cCCcEEEEEEEecCCceEEEECCEEEEcCCcCch
Confidence            432  123332  344478999999999999873

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=92.50  E-value=0.34  Score=55.68  Aligned_cols=96  Identities=19%  Similarity=0.285  Sum_probs=67.9

Q ss_pred             HHhhcCCcEEEEecC-CccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEcCE
Q psy14927        924 VWGRLGAEVTAIEFM-NAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDA 1001 (1074)
Q Consensus       924 ~l~~~G~~Vtlv~~~-~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D~ 1001 (1074)
                      .+...|....++.-. +++. ....+.+.+.+.+.+++.|++++++++|..++-.++. ..+.+.+      +.++++|.
T Consensus       149 e~~aa~a~~eil~~~~rHiG-TD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~------g~~i~~~~  221 (486)
T COG2509         149 EFRAAGAGEEILPIYQRHIG-TDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTK------GEEIEADY  221 (486)
T ss_pred             HHHHhCCCceeeeccccccC-ccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccC------CcEEecCE
Confidence            344556655555443 4444 6677889999999999999999999999999876554 3444433      67999999


Q ss_pred             EEEccCCcccCCccC-ccccCcccCC
Q psy14927       1002 LLVCVGRRPYTHNLG-LEEIGIEKDE 1026 (1074)
Q Consensus      1002 vi~a~G~~p~~~~l~-l~~~gl~ld~ 1026 (1074)
                      ||+|+|+.....+-. .+..|+.+..
T Consensus       222 vvlA~Grsg~dw~~~l~~K~Gv~~~~  247 (486)
T COG2509         222 VVLAPGRSGRDWFEMLHKKLGVKMRA  247 (486)
T ss_pred             EEEccCcchHHHHHHHHHhcCccccc
Confidence            999999987655322 2333555544

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=92.50  E-value=0.43  Score=63.72  Aligned_cols=61  Identities=13%  Similarity=0.172  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHh---CCCEEEeCceEEEEEecC----------CeEEEEEeec-cCCCCceEEEcCEEEEccCCcc
Q psy14927        950 VAKQFQRILGK---QGMQFKLGTKVTGASKSG----------DNITVTIENV-KDPTKKEELSCDALLVCVGRRP 1010 (1074)
Q Consensus       950 ~~~~~~~~l~~---~gV~i~~~~~v~~i~~~~----------~~~~v~~~~~-~~~g~~~~i~~D~vi~a~G~~p 1010 (1074)
                      +...+.+.+++   .||+|++++.++++..++          ..+.|...+. ..+|+...+.++.||+|||--.
T Consensus       546 i~~~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~  620 (1167)
T PTZ00306        546 IMRTLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFS  620 (1167)
T ss_pred             HHHHHHHHHHhhccCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCcc
Confidence            44555565554   499999999999987542          1244555542 0025556899999999998533

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=92.49  E-value=0.95  Score=42.39  Aligned_cols=81  Identities=12%  Similarity=0.003  Sum_probs=59.9

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHhhC-----------hhhhhhHhhccCCHHHHHHHHHh-----cCC---hHHHHH
Q psy14927         50 PVLLKWWAQYIESTEDMDLAMKYYEEARD-----------YLSMVRVLCFLQDFSRAAELANA-----SGD---TAAAYH  110 (1074)
Q Consensus        50 ~~l~~~~a~~~e~~~~~~~A~~~y~~a~d-----------~~~~vr~l~~~~~~~~a~~i~~~-----~~~---~~~~~~  110 (1074)
                      ++.+-..|..+...|++++|.+.|..+-.           ...+.+++...|++++|.+..+.     +++   ..+.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            34556678888888899989888877622           12356778888888888887762     122   456788


Q ss_pred             HHHHHHhcCChHHHHHHHHH
Q psy14927        111 LARQYENSGQFDEAIHFYSV  130 (1074)
Q Consensus       111 la~~~~~~g~~~~Ai~~y~~  130 (1074)
                      +|..+.+.|++++|+++|.+
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~  101 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQ  101 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHH
Confidence            99999999999999988754

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=92.45  E-value=1.2  Score=44.29  Aligned_cols=88  Identities=16%  Similarity=0.180  Sum_probs=59.1

Q ss_pred             HHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHhCChH
Q psy14927         56 WAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCG  135 (1074)
Q Consensus        56 ~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~  135 (1074)
                      ||--+...|++++|.++|.          +||...           +.+....+.||-.+...|++++||+.|.++...+
T Consensus        41 ~A~~ly~~G~l~~A~~~f~----------~L~~~D-----------p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~   99 (157)
T PRK15363         41 YAMQLMEVKEFAGAARLFQ----------LLTIYD-----------AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK   99 (157)
T ss_pred             HHHHHHHCCCHHHHHHHHH----------HHHHhC-----------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            3555566666666665553          333332           3367788899999999999999999988765544


Q ss_pred             HHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHccCChhHHHHHHHHhCChHHHHHHHHh
Q psy14927        136 NAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLETIEPDKAVLLYHKAGALHKALDLAFK  196 (1074)
Q Consensus       136 ~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~~~~~A~~ly~kaG~~~kAl~l~~~  196 (1074)
                                         ++.+.             -+..++..|.+.|+...|.+.+..
T Consensus       100 -------------------~ddp~-------------~~~~ag~c~L~lG~~~~A~~aF~~  128 (157)
T PRK15363        100 -------------------IDAPQ-------------APWAAAECYLACDNVCYAIKALKA  128 (157)
T ss_pred             -------------------CCCch-------------HHHHHHHHHHHcCCHHHHHHHHHH
Confidence                               21111             135678888888888888776544

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=92.40  E-value=0.93  Score=56.04  Aligned_cols=153  Identities=8%  Similarity=-0.080  Sum_probs=0.0

Q ss_pred             hhhhhccccchHHHHHHHh----hhhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCe
Q psy14927        796 VVLNTLGNCAAVQANYHLA----TKLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNT  871 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la----~~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~  871 (1074)
                      +|||||||.||+.||+.++    .                                                     ...
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e-----------------------------------------------------~G~   27 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDK-----------------------------------------------------KGL   27 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhh-----------------------------------------------------CCC


Q ss_pred             EEEEeCCCCeeEEEcCeEEEccC--CCCCCCCCCCCCCcceechhhHhcchH------------------hhHHhhcCCc
Q psy14927        872 VTVIKSDGSTEEVKTKNILIATG--SEVTPFPGIEVDEETIVSSTGALSLKK------------------GSVWGRLGAE  931 (1074)
Q Consensus       872 ~~v~~~~G~~~~i~~d~lIIATG--~~p~~ipgi~~~~~~v~t~~~~~~~~~------------------A~~l~~~G~~  931 (1074)
                      ..+.++.+  .......  +|.|  +-...+..-.+....-....+.+....                  -..|.++|..
T Consensus        28 ~VilieK~--~~~~s~s--~A~G~~gi~~~~~~~~g~Ds~e~~~~d~~~~~~gl~d~~lV~~lv~~s~~~i~~L~~~Gv~  103 (614)
T TIGR02061        28 KIVLVEKA--NLERSGA--VAQGLSAINTYLGTRFGENNAEDYVRYVRTDLMGLVREDLIFDMARHVDDSVHLFEEWGLP  103 (614)
T ss_pred             eEEEEEcc--CCCCCCc--cccccchhhhhhhcccCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCC


Q ss_pred             EEEEecCCccCCCCC-------CHHHHHHHHHHHHhCCCEEEeCceEEEEEec----CCeEEEEEeeccCCCCceEEEcC
Q psy14927        932 VTAIEFMNAIGGMGI-------DGEVAKQFQRILGKQGMQFKLGTKVTGASKS----GDNITVTIENVKDPTKKEELSCD 1000 (1074)
Q Consensus       932 Vtlv~~~~~~~~~~~-------~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~----~~~~~v~~~~~~~~g~~~~i~~D 1000 (1074)
                      ........... +.-       ...+...+...+.+.+++++.++.+.++..+    +..+.+...+.. +|+...+.++
T Consensus       104 F~~~~~~G~~~-~~g~~~~~~gG~~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~-~g~~~~i~Ak  181 (614)
T TIGR02061       104 LWIKPEDGKYV-REGRWQIMIHGESYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVR-ANEVHVFKAK  181 (614)
T ss_pred             ceecCCCCccc-cCCCcccCcCchhHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeC-CCcEEEEECC


Q ss_pred             EEEEccC
Q psy14927       1001 ALLVCVG 1007 (1074)
Q Consensus      1001 ~vi~a~G 1007 (1074)
                      .||+|||
T Consensus       182 aVVLATG  188 (614)
T TIGR02061       182 TVIVAAG  188 (614)
T ss_pred             EEEECCC

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=92.31  E-value=24  Score=40.16  Aligned_cols=246  Identities=20%  Similarity=0.168  Sum_probs=134.1

Q ss_pred             hcHHHHHHHhhcC----CChHHHHHH-HHHHHhccCHHHHHHHHHHhhCh---------hhhhhHhhccCCHHHHHHHHH
Q psy14927         35 ENTDKLEKYIIQS----KDPVLLKWW-AQYIESTEDMDLAMKYYEEARDY---------LSMVRVLCFLQDFSRAAELAN  100 (1074)
Q Consensus        35 ~~~~~~~~~~~~~----~~~~l~~~~-a~~~e~~~~~~~A~~~y~~a~d~---------~~~vr~l~~~~~~~~a~~i~~  100 (1074)
                      ++|.+++.++.++    +.|.|.-.. |+.+-..|+++.|=++-..+-.-         ...+|++...|+.+-|..=+.
T Consensus        98 G~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~  177 (400)
T COG3071          98 GDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVD  177 (400)
T ss_pred             CcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHH
Confidence            6888888888873    334444433 77777888888887766664333         344566666666655544332


Q ss_pred             -----hcCChHHHHHHHHHHHhcCChHHHHHHH---HHhCCh--HHHHHHHHHhCchHHHHHHhhh-cCchhHHHHHHHH
Q psy14927        101 -----ASGDTAAAYHLARQYENSGQFDEAIHFY---SVAGSC--GNAVRLCKEQALDDQLWNLALS-AGPSEQIEAATYL  169 (1074)
Q Consensus       101 -----~~~~~~~~~~la~~~~~~g~~~~Ai~~y---~~a~~~--~~A~~la~~~~~~~~~~~l~~~-~~~~~~~~~A~~~  169 (1074)
                           .+..+.......+.|...|++.+...+.   .++|.+  +|+.+|=.+-     +..+..+ ..++.-.-.-+|.
T Consensus       178 ~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a-----~~glL~q~~~~~~~~gL~~~W  252 (400)
T COG3071         178 QLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQA-----WEGLLQQARDDNGSEGLKTWW  252 (400)
T ss_pred             HHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHH-----HHHHHHHHhccccchHHHHHH
Confidence                 2445566666667777777776665443   233332  2233221111     1111111 1111111122333


Q ss_pred             cc------CCh---hHHHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcc--hHHHHHH
Q psy14927        170 ET------IEP---DKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSR--MKEIYVM  238 (1074)
Q Consensus       170 e~------~~~---~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r--~~~l~~~  238 (1074)
                      .+      +++   ...+..|..+|....|.++..+.                |-+..|.+ .+.+...++  +.+=-++
T Consensus       253 ~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~----------------Lk~~~D~~-L~~~~~~l~~~d~~~l~k  315 (400)
T COG3071         253 KNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDA----------------LKRQWDPR-LCRLIPRLRPGDPEPLIK  315 (400)
T ss_pred             HhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHH----------------HHhccChh-HHHHHhhcCCCCchHHHH
Confidence            22      122   34677888899999998887762                22344444 333333332  1222234


Q ss_pred             HHHHHhcCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHH-------------HhHHHHhhcCHHHHHHHHHHHHHHHH
Q psy14927        239 AANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSC-------------AQVEIDEFGNYEKGLGALNEAKRCLL  304 (1074)
Q Consensus       239 aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~-------------a~~ei~e~~~y~~a~~~l~~a~~~l~  304 (1074)
                      +++.-.+. ...+|.....+-++|.|-|.|.+|..++...             |..- +.-|+-..|.+...++.....
T Consensus       316 ~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~-~~~g~~~~A~~~r~e~L~~~~  392 (400)
T COG3071         316 AAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADAL-DQLGEPEEAEQVRREALLLTR  392 (400)
T ss_pred             HHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHH-HHcCChHHHHHHHHHHHHHhc
Confidence            44444444 4566889999999999999999988766643             3332 445555555555555554333

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=92.16  E-value=1.1  Score=42.73  Aligned_cols=82  Identities=23%  Similarity=0.154  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHhhC--------HHHHHH---HHHHcCCHHHHHHHHHh----cCC----cHHHHH
Q psy14927        624 RVLLKWWAQYIESTEDMDLAMKYYEEARD--------YLSMVR---VLCFLQDFSRAAELANA----SGD----TAAAYH  684 (1074)
Q Consensus       624 ~~l~~~~a~~~e~~~~~~~A~~~y~~ag~--------~~~ai~---~~~~~~~~~~a~~v~~~----~~~----~~~~~~  684 (1074)
                      |++....|...+..|+.++|+.+|.+|-.        .+-.|.   .|..+|+.++|+.+.++    .++    ......
T Consensus         1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f   80 (120)
T PF12688_consen    1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF   80 (120)
T ss_pred             CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence            34667788889999999999999998822        122222   27788888888877742    222    122225


Q ss_pred             HHHHHHhcCCHHHHHHHHHHc
Q psy14927        685 LARQYENSGQFDEAIHFYSVA  705 (1074)
Q Consensus       685 ~A~~~~~~g~~~~A~~~~~ka  705 (1074)
                      +|..+...|.+++|...++.+
T Consensus        81 ~Al~L~~~gr~~eAl~~~l~~  101 (120)
T PF12688_consen   81 LALALYNLGRPKEALEWLLEA  101 (120)
T ss_pred             HHHHHHHCCCHHHHHHHHHHH
Confidence            577777777777777766654

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=92.06  E-value=3.5  Score=40.76  Aligned_cols=98  Identities=22%  Similarity=0.176  Sum_probs=63.8

Q ss_pred             cCCHHHHHH----HHHhcCCcH----HHHHHHHHHHhcCCHHHHHHHHHHcCC--HHHH----HH--H------hccHHH
Q psy14927        663 LQDFSRAAE----LANASGDTA----AAYHLARQYENSGQFDEAIHFYSVAGS--CGNA----VR--L------CGQLDA  720 (1074)
Q Consensus       663 ~~~~~~a~~----v~~~~~~~~----~~~~~A~~~~~~g~~~~A~~~~~kag~--~~~A----v~--m------a~~w~~  720 (1074)
                      .+++.++..    ++...+++.    ....+|..+...|++++|...|-.+-.  +...    +.  +      -+++++
T Consensus        24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~  103 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE  103 (145)
T ss_pred             CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            556665554    444555542    222789999999999999999976632  2111    12  2      488999


Q ss_pred             HHHHHHHhCC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy14927        721 VESIASELNV-QSDQDLILKCASYFARREHHDRAVQMYAIA  760 (1074)
Q Consensus       721 a~~~A~~~~~-~~~~~~~~~~a~~~~~~~~~~~Ai~~y~~a  760 (1074)
                      |....+...+ ...+..+.-.|.-+...|+++.|++.|.++
T Consensus       104 Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen  104 ALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            9988877533 233355556666667788888888777764

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=92.06  E-value=0.24  Score=43.14  Aligned_cols=67  Identities=25%  Similarity=0.333  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHH
Q psy14927         51 VLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSV  130 (1074)
Q Consensus        51 ~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~  130 (1074)
                      ..+..+|..+...|+|++|+.+|.++=+.      ....|+-.  ..      -......+|..|...|++++|+++|.+
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~--~~------~a~~~~~lg~~~~~~g~~~~A~~~~~~   71 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDI------EEQLGDDH--PD------TANTLNNLGECYYRLGDYEEALEYYQK   71 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH------HHHTTTHH--HH------HHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH------HHHHCCCC--HH------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            45677799999999999999999776544      22334321  11      133467999999999999999999876


Q ss_pred             h
Q psy14927        131 A  131 (1074)
Q Consensus       131 a  131 (1074)
                      +
T Consensus        72 a   72 (78)
T PF13424_consen   72 A   72 (78)
T ss_dssp             H
T ss_pred             H
Confidence            4

...

>KOG1129|consensus

Probab=92.04  E-value=3.4  Score=45.41  Aligned_cols=107  Identities=18%  Similarity=0.144  Sum_probs=77.2

Q ss_pred             HHHHHhccCHHHHHHHHHHhhC-------hhhhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHHHHHhcCChHHH
Q psy14927         57 AQYIESTEDMDLAMKYYEEARD-------YLSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLARQYENSGQFDEA  124 (1074)
Q Consensus        57 a~~~e~~~~~~~A~~~y~~a~d-------~~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~~~~~~g~~~~A  124 (1074)
                      |+-+..-|.+..|++.+.++=.       |.=+-++|..+.+|..|..+..+     +.++.-..-+||+++..|+.++|
T Consensus       230 gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a  309 (478)
T KOG1129|consen  230 GKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDA  309 (478)
T ss_pred             HHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHH
Confidence            8889999999999998887543       34455678889999999888763     45677788899999999999999


Q ss_pred             HHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHHH-HHHHHccCChhHHHHHHHH
Q psy14927        125 IHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIE-AATYLETIEPDKAVLLYHK  183 (1074)
Q Consensus       125 i~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~-~A~~~e~~~~~~A~~ly~k  183 (1074)
                      +++|.+.-         +.|           ....+...- +-.||-.++++.|..+|.+
T Consensus       310 ~~lYk~vl---------k~~-----------~~nvEaiAcia~~yfY~~~PE~AlryYRR  349 (478)
T KOG1129|consen  310 LQLYKLVL---------KLH-----------PINVEAIACIAVGYFYDNNPEMALRYYRR  349 (478)
T ss_pred             HHHHHHHH---------hcC-----------CccceeeeeeeeccccCCChHHHHHHHHH
Confidence            99997532         222           111111111 2356667777888888875

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=92.03  E-value=0.88  Score=47.77  Aligned_cols=127  Identities=20%  Similarity=0.138  Sum_probs=82.1

Q ss_pred             cHHHHHHHhhc-----CCChHHHHHHHHHHHhccCHHHHHHHHHHh-------hChh-hhhhHhhccCCHHHHHHHHHhc
Q psy14927         36 NTDKLEKYIIQ-----SKDPVLLKWWAQYIESTEDMDLAMKYYEEA-------RDYL-SMVRVLCFLQDFSRAAELANAS  102 (1074)
Q Consensus        36 ~~~~~~~~~~~-----~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a-------~d~~-~~vr~l~~~~~~~~a~~i~~~~  102 (1074)
                      ++..+...+.+     +++..-|.-.|.++...|+.+.|-+.|.+|       ||+. +---+||.+|.+++|..--+..
T Consensus        50 d~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~A  129 (250)
T COG3063          50 DYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERA  129 (250)
T ss_pred             CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHH
Confidence            56666655555     466667888899999999999999999996       4443 3345599999998887765532


Q ss_pred             ------CCh-HHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHccCChh
Q psy14927        103 ------GDT-AAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLETIEPD  175 (1074)
Q Consensus       103 ------~~~-~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~~~~  175 (1074)
                            +.. .....++-...++|+.+.|-++|.++-..+                   ++.++.....+=.+++.+++-
T Consensus       130 l~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-------------------p~~~~~~l~~a~~~~~~~~y~  190 (250)
T COG3063         130 LADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-------------------PQFPPALLELARLHYKAGDYA  190 (250)
T ss_pred             HhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-------------------cCCChHHHHHHHHHHhcccch
Confidence                  122 233455555567788888888877654433                   333333333344455556666


Q ss_pred             HHHHHH
Q psy14927        176 KAVLLY  181 (1074)
Q Consensus       176 ~A~~ly  181 (1074)
                      .|-.+|
T Consensus       191 ~Ar~~~  196 (250)
T COG3063         191 PARLYL  196 (250)
T ss_pred             HHHHHH
Confidence            655444

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=91.99  E-value=2.5  Score=46.35  Aligned_cols=122  Identities=18%  Similarity=0.156  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEecCC-e-EEEEEeec----c-CCCCceEEEcCEEEEccCCcccCC-ccCccc
Q psy14927        948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSGD-N-ITVTIENV----K-DPTKKEELSCDALLVCVGRRPYTH-NLGLEE 1019 (1074)
Q Consensus       948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~-~-~~v~~~~~----~-~~g~~~~i~~D~vi~a~G~~p~~~-~l~l~~ 1019 (1074)
                      ..+...+.+...+.|++++.++.+..+..+++ . ..+.+...    . ......++.++.||.|+|...... .+ ...
T Consensus       104 ~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l-~~~  182 (257)
T PRK04176        104 VEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVL-ARK  182 (257)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHH-HHH
Confidence            45666677777889999999999999875444 2 22332210    0 001346899999999999643221 10 000


Q ss_pred             ---cCccc--------CCCCCeeeCCCCCCCCCCEEEecccCC----CCCc---HHHHHHHHHHHHHHhh
Q psy14927       1020 ---IGIEK--------DEKGRVPVNSRFQTVIPNIFAIGDCIH----GPML---AHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1020 ---~gl~l--------d~~G~I~Vd~~~~ts~~~IyAiGD~~~----~~~~---~~~A~~~G~~aA~~I~ 1071 (1074)
                         .+...        +......|+.+- --+||+|++|=+++    .|..   -..=.-.|+.||.-|+
T Consensus       183 ~~~~~~~~~g~~~~~~~~~e~~v~~~t~-~~~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~  251 (257)
T PRK04176        183 GPELGIEVPGEKSMWAERGEKLVVENTG-EVYPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELIL  251 (257)
T ss_pred             cCCcccccCCccccccCchHHHHHhcCC-eEcCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHH
Confidence               01111        111112222221 24899999998765    1221   1122457888887765

>KOG1127|consensus

Probab=91.96  E-value=8.5  Score=48.37  Aligned_cols=113  Identities=17%  Similarity=0.167  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHhhChh--------hhhhHhhccCCHHHHHHHHHhcCChHH-------HHHHHHHHH
Q psy14927         52 LLKWWAQYIESTEDMDLAMKYYEEARDYL--------SMVRVLCFLQDFSRAAELANASGDTAA-------AYHLARQYE  116 (1074)
Q Consensus        52 l~~~~a~~~e~~~~~~~A~~~y~~a~d~~--------~~vr~l~~~~~~~~a~~i~~~~~~~~~-------~~~la~~~~  116 (1074)
                      -+-.+|+++-..-++..|-+||.+|-+.+        ..+..+....+|++|..|+-.++..+.       ..+++-+|.
T Consensus       494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyL  573 (1238)
T KOG1127|consen  494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYL  573 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccccc
Confidence            45556888888889999999999876653        244557777777777777543321111       113333333


Q ss_pred             hcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHccCChhHHHHHHHHhCChHHHHHHHHh
Q psy14927        117 NSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLETIEPDKAVLLYHKAGALHKALDLAFK  196 (1074)
Q Consensus       117 ~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~~~~~A~~ly~kaG~~~kAl~l~~~  196 (1074)
                      +.++...||.-|             +.          ++...|.++         +-+.-+++.|+.+|++.-|++.+-+
T Consensus       574 ea~n~h~aV~~f-------------Qs----------ALR~dPkD~---------n~W~gLGeAY~~sGry~~AlKvF~k  621 (1238)
T KOG1127|consen  574 EAHNLHGAVCEF-------------QS----------ALRTDPKDY---------NLWLGLGEAYPESGRYSHALKVFTK  621 (1238)
T ss_pred             CccchhhHHHHH-------------HH----------HhcCCchhH---------HHHHHHHHHHHhcCceehHHHhhhh
Confidence            333333333322             11          133333221         1146678888888888888888655

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=91.90  E-value=0.05  Score=65.05  Aligned_cols=33  Identities=24%  Similarity=0.299  Sum_probs=29.7

Q ss_pred             hhhhhccccchHHHHHHHhh-------hhhhhcccccccc
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVKL  828 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~~  828 (1074)
                      +|+|||||++||+||+.|++       +++|+.+..||..
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~   41 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKI   41 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceE
Confidence            48999999999999999997       7999999988854

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=91.84  E-value=0.2  Score=42.20  Aligned_cols=54  Identities=28%  Similarity=0.287  Sum_probs=43.2

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhCh
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDY   79 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~   79 (1074)
                      |.+.|++++|+++|+++-..+                    ++++.++..+|+.+...|++++|.+.+.+.-..
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~--------------------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRN--------------------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHT--------------------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             ChhccCHHHHHHHHHHHHHHC--------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            457899999999999886333                    556889999999999999999999888775544

...

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=91.67  E-value=0.24  Score=63.63  Aligned_cols=88  Identities=15%  Similarity=0.133  Sum_probs=49.2

Q ss_pred             hhhhhhccccchHHHHHHHhh-------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEE
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKI  866 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~  866 (1074)
                      ++|||||||..|+.+|..+.+       +++.....       ..++...    ..    +... ...||+|+.+ .++.
T Consensus       669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~-------~~MPA~~----eE----le~A-leeGVe~~~~~~p~~  732 (1019)
T PRK09853        669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTK-------QEMPAWR----EE----YEEA-LEDGVEFKELLNPES  732 (1019)
T ss_pred             CEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCc-------ccccccH----HH----HHHH-HHcCCEEEeCCceEE
Confidence            349999999999999988776       11111110       0111111    11    1111 2359998877 3444


Q ss_pred             ecC-CeEEE---------------EeCCCCeeEEEcCeEEEccCCCCC
Q psy14927        867 TGP-NTVTV---------------IKSDGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       867 id~-~~~~v---------------~~~~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      ++. +.+.+               ....|+..++.+|.||+|+|..|.
T Consensus       733 I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pn  780 (1019)
T PRK09853        733 FDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVD  780 (1019)
T ss_pred             EEcCCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCC
Confidence            431 11111               111233468999999999999873

>PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C

Probab=91.50  E-value=2.1  Score=47.69  Aligned_cols=118  Identities=13%  Similarity=0.035  Sum_probs=78.0

Q ss_pred             HHHHHhhCHHHHHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHHHhc---CCH------HHHHHHHHHcCCHHHHHHH-
Q psy14927        645 KYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENS---GQF------DEAIHFYSVAGSCGNAVRL-  714 (1074)
Q Consensus       645 ~~y~~ag~~~~ai~~~~~~~~~~~a~~v~~~~~~~~~~~~~A~~~~~~---g~~------~~A~~~~~kag~~~~Av~m-  714 (1074)
                      .-++..|+.++|+++....++|..|+=++...++..-...+-+|+...   |+-      .-..-+-+-+|..+++|+- 
T Consensus         3 ~~~Ll~G~~~~Av~~al~~~~wa~ALlLAs~~g~e~~~~v~~~y~~~~~~~~~~~~~~~~~L~~l~~v~~g~~~~~v~~l   82 (284)
T PF12931_consen    3 QQLLLVGNREEAVELALDNGLWAHALLLASSLGPELWKKVVQEYFRREFSAGSPSSKITHLLRTLYQVFSGNSPEAVDEL   82 (284)
T ss_dssp             HHHHHTT-HHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHH--------THHHHHHHHHHHHHTTT-HHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHCCChHHHHHHHHhcCHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHcCCcHHHHHHh
Confidence            457889999999999999999999999998777666666666777666   332      1233344567888877743 


Q ss_pred             --------------hccHHHHHHHHHHhCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhCC
Q psy14927        715 --------------CGQLDAVESIASELNVQSDQDLILKCASYFARREHHDRAVQMYAIARR  762 (1074)
Q Consensus       715 --------------a~~w~~a~~~A~~~~~~~~~~~~~~~a~~~~~~~~~~~Ai~~y~~ag~  762 (1074)
                                    .++|.+..-+.=.+.++.....+..+|..|...|+...|--||.-+|.
T Consensus        83 ~~~~~~~~~~~~~~~~~Wre~lA~il~N~~~~~~~~l~~LGd~L~~~g~~~aA~iCYllag~  144 (284)
T PF12931_consen   83 VPNSAAPPLEGEWDLDNWRETLAIILSNRTPEDSQALCALGDRLWQRGRVEAAHICYLLAGN  144 (284)
T ss_dssp             HH-----HHHHHHHHHSHHHHHHHHHHTS---SS-TT--HHHHHHHTT-HHHHHHHHHHTT-
T ss_pred             ccccccccccccchhcCHHHHHHHHHhCCCcccHHHHHHHHHHHHhCCCcchhHHHHhHcCC
Confidence                          247999988777776665556778899999999998888888876654

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=91.47  E-value=0.35  Score=61.80  Aligned_cols=88  Identities=17%  Similarity=0.122  Sum_probs=51.4

Q ss_pred             hhhhhhccccchHHHHHHHhh------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeee-EEEe
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGH-GKIT  867 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~-v~~i  867 (1074)
                      ++|||||||+.|+.+|..+.+      +++...+.       ..++...    .     ....+...||+|++++ ++.+
T Consensus       571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~-------~~~~~~~----~-----e~~~~~~~GV~i~~~~~~~~i  634 (752)
T PRK12778        571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSE-------EEMPARL----E-----EVKHAKEEGIEFLTLHNPIEY  634 (752)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc-------ccCCCCH----H-----HHHHHHHcCCEEEecCcceEE
Confidence            459999999999999999987      22222111       0011111    1     1123566799998873 3333


Q ss_pred             c--C-CeE-EEEe---------C---------CCCeeEEEcCeEEEccCCCCC
Q psy14927        868 G--P-NTV-TVIK---------S---------DGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       868 d--~-~~~-~v~~---------~---------~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      .  . ..+ .|.+         .         .|+..++.+|.||+|+|..|.
T Consensus       635 ~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~  687 (752)
T PRK12778        635 LADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPN  687 (752)
T ss_pred             EECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCC
Confidence            2  1 111 1111         1         133357999999999999874

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=91.34  E-value=2.1  Score=45.02  Aligned_cols=33  Identities=18%  Similarity=0.170  Sum_probs=28.7

Q ss_pred             hcCChHHHHHHHHHHHhcCChHHHHHHHHHhCC
Q psy14927        101 ASGDTAAAYHLARQYENSGQFDEAIHFYSVAGS  133 (1074)
Q Consensus       101 ~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~  133 (1074)
                      ++++..+...+|+.|...|++++|++.|.++-+
T Consensus        69 ~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~  101 (198)
T PRK10370         69 NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQ  101 (198)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            567889999999999999999999999876544

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=91.32  E-value=0.3  Score=63.00  Aligned_cols=88  Identities=15%  Similarity=0.137  Sum_probs=50.2

Q ss_pred             hhhhhhccccchHHHHHHHhh-------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeee-EEE
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGH-GKI  866 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~-v~~  866 (1074)
                      ++|||||||..|+.+|..+.+       +++.....       ..++...    ..    +.. ....||+|+.+. ++.
T Consensus       667 K~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~-------~~Mpa~~----eE----l~~-aleeGVe~~~~~~p~~  730 (1012)
T TIGR03315       667 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTK-------RYMPASR----EE----LEE-ALEDGVDFKELLSPES  730 (1012)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCc-------cccccCH----HH----HHH-HHHcCCEEEeCCceEE
Confidence            349999999999999988776       11111110       0011111    11    112 224689988763 344


Q ss_pred             ecCCeEEE---------------EeCCCCeeEEEcCeEEEccCCCCC
Q psy14927        867 TGPNTVTV---------------IKSDGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       867 id~~~~~v---------------~~~~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      +..+.+++               .+.+|+..++.+|.||+|+|..|.
T Consensus       731 I~~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pn  777 (1012)
T TIGR03315       731 FEDGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVD  777 (1012)
T ss_pred             EECCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCC
Confidence            43332222               122454567999999999999873

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>KOG0548|consensus

Probab=91.30  E-value=6.4  Score=46.22  Aligned_cols=274  Identities=16%  Similarity=0.088  Sum_probs=152.6

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHhhCh------hhhhhH--hhccCCHHHHHHHHHhc----CCh-HHHHHHHHHHHhcCC
Q psy14927         54 KWWAQYIESTEDMDLAMKYYEEARDY------LSMVRV--LCFLQDFSRAAELANAS----GDT-AAAYHLARQYENSGQ  120 (1074)
Q Consensus        54 ~~~a~~~e~~~~~~~A~~~y~~a~d~------~~~vr~--l~~~~~~~~a~~i~~~~----~~~-~~~~~la~~~~~~g~  120 (1074)
                      +.-+..+.+.|+|++|..+|..|=..      ...=|.  |..+|++++|.+=+.++    .+. -+.++.|.-+.-.|+
T Consensus         6 k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~   85 (539)
T KOG0548|consen    6 KEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGD   85 (539)
T ss_pred             HHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhccc
Confidence            34466788999999999999987543      222333  77789998887766543    233 367789988999999


Q ss_pred             hHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHh----hhcCchh------------HHH---HHHHHcc-CChhHHHHH
Q psy14927        121 FDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLA----LSAGPSE------------QIE---AATYLET-IEPDKAVLL  180 (1074)
Q Consensus       121 ~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~----~~~~~~~------------~~~---~A~~~e~-~~~~~A~~l  180 (1074)
                      |++|+.-|.++-..+---... ..|+.+......    ....|..            ++.   .-..++. .+....+++
T Consensus        86 ~~eA~~ay~~GL~~d~~n~~L-~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~  164 (539)
T KOG0548|consen   86 YEEAILAYSEGLEKDPSNKQL-KTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL  164 (539)
T ss_pred             HHHHHHHHHHHhhcCCchHHH-HHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence            999999998865443211111 112222110000    0011111            111   1112233 234556777


Q ss_pred             HHHhCChHHHHHHHHhhccC---CcchHHHHHH-----HHHH---hcCCChhhHHHhhhhcchHHHHHHHHHHHhcCCCC
Q psy14927        181 YHKAGALHKALDLAFKLTLS---NSGLVFQIKA-----MKCL---LKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWK  249 (1074)
Q Consensus       181 y~kaG~~~kAl~l~~~~~~~---~~~~~~~~~a-----~k~l---~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~~~~  249 (1074)
                      |..--+..+|+-.+....+.   ..|.... ..     -++.   -..+|..........+++   +..++|=....   
T Consensus       165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~---ek~lgnaaykk---  237 (539)
T KOG0548|consen  165 YLNDPRLMKADGQLKGVDELLFYASGIEIL-ASMAEPCKQEHNGFPIIEDNTEERRVKEKAHK---EKELGNAAYKK---  237 (539)
T ss_pred             ccccHHHHHHHHHHhcCccccccccccccC-CCCCCcccccCCCCCccchhHHHHHHHHhhhH---HHHHHHHHHHh---
Confidence            77766667776666543210   0000000 00     0000   001111111111111222   33455555554   


Q ss_pred             CChhHHHHHHHHHHccCCHHHHHHHHHHHHhHHHHhhcCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhh
Q psy14927        250 SQPELLKSIISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDE  329 (1074)
Q Consensus       250 ~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (1074)
                         +++-..+++|.++-..+....++...+-.+ =|-|.|......-+.|+..-.+......  |-......+.+.|++ 
T Consensus       238 ---k~f~~a~q~y~~a~el~~~it~~~n~aA~~-~e~~~~~~c~~~c~~a~E~gre~rad~k--lIak~~~r~g~a~~k-  310 (539)
T KOG0548|consen  238 ---KDFETAIQHYAKALELATDITYLNNIAAVY-LERGKYAECIELCEKAVEVGRELRADYK--LIAKALARLGNAYTK-  310 (539)
T ss_pred             ---hhHHHHHHHHHHHHhHhhhhHHHHHHHHHH-HhccHHHHhhcchHHHHHHhHHHHHHHH--HHHHHHHHhhhhhhh-
Confidence               677778888888888888888888888888 7788888887777776655554332222  222222235678888 


Q ss_pred             cCChHHHhhHHHH
Q psy14927        330 FGNYEKGLGALNE  342 (1074)
Q Consensus       330 ~~~~~~a~~~~~~  342 (1074)
                      +++++.|+..|++
T Consensus       311 ~~~~~~ai~~~~k  323 (539)
T KOG0548|consen  311 REDYEGAIKYYQK  323 (539)
T ss_pred             HHhHHHHHHHHHH
Confidence            7999999999988

>KOG3060|consensus

Probab=91.02  E-value=2.5  Score=45.04  Aligned_cols=82  Identities=24%  Similarity=0.227  Sum_probs=62.6

Q ss_pred             CCChHHHHHHHHHHHhccCHHHHHHHHHHh--hCh------hhhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHH
Q psy14927         47 SKDPVLLKWWAQYIESTEDMDLAMKYYEEA--RDY------LSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLAR  113 (1074)
Q Consensus        47 ~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a--~d~------~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~  113 (1074)
                      +.|+++.+..|-.+|+.|+|++|.++|.+-  .|-      ...+-++..+|..-+|.+-..+     .+|.++...+|.
T Consensus        83 p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLae  162 (289)
T KOG3060|consen   83 PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAE  162 (289)
T ss_pred             CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            788999999999999999999999999883  222      1233346667777677666553     468888888888


Q ss_pred             HHHhcCChHHHHHHH
Q psy14927        114 QYENSGQFDEAIHFY  128 (1074)
Q Consensus       114 ~~~~~g~~~~Ai~~y  128 (1074)
                      +|...|+|++|+-.|
T Consensus       163 iY~~~~~f~kA~fCl  177 (289)
T KOG3060|consen  163 IYLSEGDFEKAAFCL  177 (289)
T ss_pred             HHHhHhHHHHHHHHH
Confidence            888888888887543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=90.99  E-value=6.3  Score=50.27  Aligned_cols=119  Identities=12%  Similarity=0.064  Sum_probs=68.6

Q ss_pred             CCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHH----hcCChHHHHHHHHHHHhcCChH
Q psy14927         47 SKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELAN----ASGDTAAAYHLARQYENSGQFD  122 (1074)
Q Consensus        47 ~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~----~~~~~~~~~~la~~~~~~g~~~  122 (1074)
                      +++..++-..|-.+.+.+++..|...        .++.+.....+|.-...++.    -..+..+.+.+|..|.+.|+.+
T Consensus        62 P~~i~~yy~~G~l~~q~~~~~~~~lv--------~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~  133 (906)
T PRK14720         62 KKSISALYISGILSLSRRPLNDSNLL--------NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENK  133 (906)
T ss_pred             CcceehHHHHHHHHHhhcchhhhhhh--------hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChH
Confidence            34455555556667777776555544        22222333434433333333    2345568999999999999999


Q ss_pred             HHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHccCChhHHHHHHH-------HhCChHHHHHH
Q psy14927        123 EAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLETIEPDKAVLLYH-------KAGALHKALDL  193 (1074)
Q Consensus       123 ~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~~~~~A~~ly~-------kaG~~~kAl~l  193 (1074)
                      +|+..|.++=.++                    ...+..+..+|.+|+..+.++|..+|.       ...++.++.++
T Consensus       134 ka~~~yer~L~~D--------------------~~n~~aLNn~AY~~ae~dL~KA~~m~~KAV~~~i~~kq~~~~~e~  191 (906)
T PRK14720        134 KLKGVWERLVKAD--------------------RDNPEIVKKLATSYEEEDKEKAITYLKKAIYRFIKKKQYVGIEEI  191 (906)
T ss_pred             HHHHHHHHHHhcC--------------------cccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence            9999876655544                    122234445666665555555555544       44455555443

>PRK07208 hypothetical protein; Provisional

Probab=90.94  E-value=0.077  Score=64.05  Aligned_cols=60  Identities=22%  Similarity=0.301  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeE-EEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927        948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNI-TVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus       948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~-~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
                      ..+.+.+.+.+.+.|++|++++.|++|..++++. .+...+.. +|+..++.+|.||++++.
T Consensus       218 ~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~-~g~~~~~~ad~VI~a~p~  278 (479)
T PRK07208        218 GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDT-DGTEETVTADQVISSMPL  278 (479)
T ss_pred             chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcC-CCCEEEEEcCEEEECCCH
Confidence            4566777788888999999999999998876653 22222211 233356899999998764

>KOG2415|consensus

Probab=90.87  E-value=0.079  Score=59.41  Aligned_cols=34  Identities=18%  Similarity=0.089  Sum_probs=28.1

Q ss_pred             hhhhhhccccchHHHHHHHhh-----------hhhhhcccccccc
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----------KLFTQAGDKGVKL  828 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----------~l~e~~~~~g~~~  828 (1074)
                      -+|+|+|||||||+||+.|.+           .++|+....|+..
T Consensus        77 ~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gght  121 (621)
T KOG2415|consen   77 VDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHT  121 (621)
T ss_pred             ccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCce
Confidence            459999999999999999988           4677777777654

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=90.83  E-value=3  Score=36.04  Aligned_cols=73  Identities=26%  Similarity=0.328  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHhHHHHhhcCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhcCChHHHhhHHHHHHHH
Q psy14927        270 LLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGNYEKGLGALNEAKRC  346 (1074)
Q Consensus       270 ~aa~~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  346 (1074)
                      ..+..|..++..- .+.|+|++|...+.+|++..+..+...+.-  .....-+..++.. .|+++.|..++.++-..
T Consensus         3 ~~a~~~~~la~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~--a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    3 DTANAYNNLARVY-RELGRYDEALDYYEKALDIEEQLGDDHPDT--ANTLNNLGECYYR-LGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHH-HHTT-HHHHHHHHHHHHHHHHHTTTHHHHH--HHHHHHHHHHHHH-TTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhh
Confidence            4577788888887 899999999999999999966666543311  2222245677777 79999999999988654

...

>KOG2311|consensus

Probab=90.71  E-value=0.21  Score=57.14  Aligned_cols=36  Identities=17%  Similarity=0.217  Sum_probs=26.5

Q ss_pred             CCCC-CCCCEEEecccCCCCCcHHHHHHHHHHHHHHhh
Q psy14927       1035 RFQT-VIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1035 ~~~t-s~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                      +++| .++|+|.+|-+.+.. --..|.+||-+|+-|..
T Consensus       382 sLeTkkV~GLF~AGQINGTT-GYEEAAAQGIiAGiNA~  418 (679)
T KOG2311|consen  382 SLETKKVQGLFFAGQINGTT-GYEEAAAQGIIAGINAS  418 (679)
T ss_pred             hhhhhhccceEEeeeecCcc-chHHHHhhhhHhhhhhh
Confidence            4556 689999999876643 34568888888887753

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=90.70  E-value=0.082  Score=61.86  Aligned_cols=33  Identities=27%  Similarity=0.289  Sum_probs=30.8

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhcccccccc
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL  828 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~  828 (1074)
                      +|+|+|||.|||+||++|+.     |++|..+..||..
T Consensus         2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~   39 (485)
T COG3349           2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKV   39 (485)
T ss_pred             eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCcee
Confidence            59999999999999999999     8999999999865

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=90.58  E-value=0.43  Score=57.56  Aligned_cols=22  Identities=9%  Similarity=-0.100  Sum_probs=18.2

Q ss_pred             chhhhhhccccchHHHHHHHhh
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT  815 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~  815 (1074)
                      .++|+|||||..|+.+|..+.+
T Consensus       283 gk~VvViGgG~~g~d~a~~a~~  304 (485)
T TIGR01317       283 GKKVVVIGGGDTGADCVGTSLR  304 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHH
Confidence            3459999999999998777665

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=90.58  E-value=1.7  Score=50.37  Aligned_cols=99  Identities=21%  Similarity=0.219  Sum_probs=56.1

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhC-------
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARD-------   78 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d-------   78 (1074)
                      +...+++++|+.++++....+.++                       ...+|+.+...++..+|.+...++=.       
T Consensus       179 l~~t~~~~~ai~lle~L~~~~pev-----------------------~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~  235 (395)
T PF09295_consen  179 LSLTQRYDEAIELLEKLRERDPEV-----------------------AVLLARVYLLMNEEVEAIRLLNEALKENPQDSE  235 (395)
T ss_pred             HhhcccHHHHHHHHHHHHhcCCcH-----------------------HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence            344577888888888877666444                       33333333333333333333322211       


Q ss_pred             -hhhhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHHHHHhcCChHHHHHH
Q psy14927         79 -YLSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLARQYENSGQFDEAIHF  127 (1074)
Q Consensus        79 -~~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~~~~~~g~~~~Ai~~  127 (1074)
                       ..-.+++|...++++.|.++++.     +.+....+.||+.|...|++++|+-.
T Consensus       236 LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALla  290 (395)
T PF09295_consen  236 LLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLA  290 (395)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence             11233334445555555555552     34667888999999999999999843

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=90.54  E-value=0.38  Score=35.15  Aligned_cols=24  Identities=33%  Similarity=0.726  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHH
Q psy14927        107 AAYHLARQYENSGQFDEAIHFYSV  130 (1074)
Q Consensus       107 ~~~~la~~~~~~g~~~~Ai~~y~~  130 (1074)
                      +...||+.|.++|++++||++|.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHH
Confidence            356899999999999999999887

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=90.49  E-value=0.54  Score=39.21  Aligned_cols=46  Identities=28%  Similarity=0.437  Sum_probs=31.7

Q ss_pred             hhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927         86 LCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus        86 l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                      +...|++++|.++.+     .+++..+.+.+|+.+..+|++++|+.+|.++
T Consensus         7 ~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   57 (65)
T PF13432_consen    7 LYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERA   57 (65)
T ss_dssp             HHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            334444444444433     2457788999999999999999999998765

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=90.35  E-value=0.36  Score=40.80  Aligned_cols=52  Identities=23%  Similarity=0.246  Sum_probs=43.8

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhcc-CHHHHHHHHHHh
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTE-DMDLAMKYYEEA   76 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~-~~~~A~~~y~~a   76 (1074)
                      .+...|++++|+..|+++-..+                    ++++.+|-++|..+...| ++++|.++|.++
T Consensus        12 ~~~~~~~~~~A~~~~~~ai~~~--------------------p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a   64 (69)
T PF13414_consen   12 IYFQQGDYEEAIEYFEKAIELD--------------------PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA   64 (69)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHS--------------------TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHcC--------------------CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence            4667889999999998887444                    455789999999999999 799999999876

...

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=90.32  E-value=1.4  Score=48.47  Aligned_cols=91  Identities=18%  Similarity=0.180  Sum_probs=0.0

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhH
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRV   85 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~   85 (1074)
                      +...|+|++|+..|++.-.....-+..                 +..+-|+|+.+...|+++.|...|      ..++..
T Consensus       153 ~~~~~~y~~Ai~af~~fl~~yP~s~~a-----------------~~A~y~LG~~y~~~g~~~~A~~~f------~~vv~~  209 (263)
T PRK10803        153 VQDKSRQDDAIVAFQNFVKKYPDSTYQ-----------------PNANYWLGQLNYNKGKKDDAAYYF------ASVVKN  209 (263)
T ss_pred             HHhcCCHHHHHHHHHHHHHHCcCCcch-----------------HHHHHHHHHHHHHcCCHHHHHHHH------HHHHHH


Q ss_pred             hhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927         86 LCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus        86 l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                      +-.....            ..+.+.+|..+.+.|++++|+++|...
T Consensus       210 yP~s~~~------------~dAl~klg~~~~~~g~~~~A~~~~~~v  243 (263)
T PRK10803        210 YPKSPKA------------ADAMFKVGVIMQDKGDTAKAKAVYQQV  243 (263)
T ss_pred             CCCCcch------------hHHHHHHHHHHHHcCCHHHHHHHHHHH

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=90.30  E-value=0.81  Score=53.66  Aligned_cols=81  Identities=21%  Similarity=0.300  Sum_probs=52.3

Q ss_pred             hhHHhhcCCcEEEEecCCccCCCCC--CHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEE
Q psy14927        922 GSVWGRLGAEVTAIEFMNAIGGMGI--DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELS  998 (1074)
Q Consensus       922 A~~l~~~G~~Vtlv~~~~~~~~~~~--~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~  998 (1074)
                      -.++.+.|.... ++.+.++. |..  ..++.+.+++.+++.||+++++++|..+..++++ ..|.+.+      ..++.
T Consensus        83 ~~ff~~~Gv~~~-~~~~gr~f-P~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~------~~~~~  154 (409)
T PF03486_consen   83 IAFFEELGVPTK-IEEDGRVF-PKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKN------GGEYE  154 (409)
T ss_dssp             HHHHHHTT--EE-E-STTEEE-ETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETT------TEEEE
T ss_pred             HHHHHhcCCeEE-EcCCCEEC-CCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccC------ccccc
Confidence            446677886533 44566666 443  3677788899999999999999999999987666 6666522      46899


Q ss_pred             cCEEEEccCCcc
Q psy14927        999 CDALLVCVGRRP 1010 (1074)
Q Consensus       999 ~D~vi~a~G~~p 1010 (1074)
                      +|.||+|+|-..
T Consensus       155 a~~vILAtGG~S  166 (409)
T PF03486_consen  155 ADAVILATGGKS  166 (409)
T ss_dssp             ESEEEE----SS
T ss_pred             CCEEEEecCCCC
Confidence            999999999764

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=90.29  E-value=2.1  Score=41.33  Aligned_cols=81  Identities=16%  Similarity=0.203  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHhhC--------HHHHHHHHHHcCCHHHHHHHHH----hc-CCcHHHHHHHHHHHh
Q psy14927        625 VLLKWWAQYIESTEDMDLAMKYYEEARD--------YLSMVRVLCFLQDFSRAAELAN----AS-GDTAAAYHLARQYEN  691 (1074)
Q Consensus       625 ~l~~~~a~~~e~~~~~~~A~~~y~~ag~--------~~~ai~~~~~~~~~~~a~~v~~----~~-~~~~~~~~~A~~~~~  691 (1074)
                      ......|...-..|++++|...|.++-.        +.....+|...+++++|....+    .. .+......+|..+..
T Consensus        18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~   97 (135)
T TIGR02552        18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA   97 (135)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence            4667788888888899999999877622        2344555788889998887663    22 223444478888888


Q ss_pred             cCCHHHHHHHHHHc
Q psy14927        692 SGQFDEAIHFYSVA  705 (1074)
Q Consensus       692 ~g~~~~A~~~~~ka  705 (1074)
                      .|+++.|+.+|.++
T Consensus        98 ~g~~~~A~~~~~~a  111 (135)
T TIGR02552        98 LGEPESALKALDLA  111 (135)
T ss_pred             cCCHHHHHHHHHHH
Confidence            89988888887543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR00292 thiazole biosynthesis enzyme

Probab=90.28  E-value=3.8  Score=44.81  Aligned_cols=123  Identities=16%  Similarity=0.149  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEecCC---eEEEEEeec----cC-CCCceEEEcCEEEEccCCccc-CCccCcc
Q psy14927        948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSGD---NITVTIENV----KD-PTKKEELSCDALLVCVGRRPY-THNLGLE 1018 (1074)
Q Consensus       948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~---~~~v~~~~~----~~-~g~~~~i~~D~vi~a~G~~p~-~~~l~l~ 1018 (1074)
                      +++...+.+...+.||+++.++.+..+..+++   ...|.+...    .+ .....++.++.||.|+|.... ..++ .+
T Consensus       100 ~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l-~~  178 (254)
T TIGR00292       100 AEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVC-AK  178 (254)
T ss_pred             HHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHH-HH
Confidence            45666777777889999999999999876544   223333210    00 012468999999999996532 2222 22


Q ss_pred             ccCcccCCC---C--C--------eeeCCCCCCCCCCEEEecccCC----CCCc--H-HHHHHHHHHHHHHhhC
Q psy14927       1019 EIGIEKDEK---G--R--------VPVNSRFQTVIPNIFAIGDCIH----GPML--A-HKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus      1019 ~~gl~ld~~---G--~--------I~Vd~~~~ts~~~IyAiGD~~~----~~~~--~-~~A~~~G~~aA~~I~~ 1072 (1074)
                      ..++.....   |  .        ..|+.+ +--+||+|++|=.++    .|..  + -.=...|+.||.-|+.
T Consensus       179 ~~~~~~~~~~~~g~~~~~~~~~e~~~~~~t-~~~~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~  251 (254)
T TIGR00292       179 KIVLEDQVPKLGGEKSMWAEVAEVAIHENT-REVVPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILE  251 (254)
T ss_pred             HcCcccCCcccCCchhhhhhhhHHHHHhcc-CcccCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHH
Confidence            222221110   0  0        111111 124899999998765    1221  1 1224678888887763

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=90.13  E-value=0.73  Score=57.90  Aligned_cols=88  Identities=14%  Similarity=0.035  Sum_probs=51.1

Q ss_pred             hhhhhhccccchHHHHHHHhh------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEe
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKIT  867 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~i  867 (1074)
                      ++|||||||..|+.+|..+.+      +++...+..    .   ++...         ...+.+...||+|+++ .++.+
T Consensus       469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~----~---~~~~~---------~e~~~~~~~Gv~~~~~~~~~~i  532 (654)
T PRK12769        469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEA----N---MPGSK---------KEVKNAREEGANFEFNVQPVAL  532 (654)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCC----C---CCCCH---------HHHHHHHHcCCeEEeccCcEEE
Confidence            349999999999999887766      122111110    0   11111         1223466779999988 34444


Q ss_pred             c--C-CeE-EEEe---------C---------CCCeeEEEcCeEEEccCCCCC
Q psy14927        868 G--P-NTV-TVIK---------S---------DGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       868 d--~-~~~-~v~~---------~---------~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      .  . +.+ .|.+         .         .|+..++.+|.||+|+|..|.
T Consensus       533 ~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~  585 (654)
T PRK12769        533 ELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPH  585 (654)
T ss_pred             EECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCC
Confidence            2  2 222 1211         1         133357999999999999875

>TIGR02462 pyranose_ox pyranose oxidase

Probab=90.12  E-value=0.93  Score=54.95  Aligned_cols=57  Identities=7%  Similarity=0.101  Sum_probs=41.3

Q ss_pred             HHHhCCCEEEeCceEEEEEecCC---e-EEEEEeeccCCCCceEEEcCEEEEccCCcccCCc
Q psy14927        957 ILGKQGMQFKLGTKVTGASKSGD---N-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHN 1014 (1074)
Q Consensus       957 ~l~~~gV~i~~~~~v~~i~~~~~---~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 1014 (1074)
                      .+...+++++.++.|.+|.-+++   . ..|.+.+.. +|+..++.++.||+|.|..-+..+
T Consensus       223 ~~~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~-~g~~~~v~A~~vVLAagaIetpRL  283 (544)
T TIGR02462       223 DAPSERFTLLTNHRCTRLVRNETNESEIEAALVRDLL-SGDRFEIKADVYVLACGAVHNPQI  283 (544)
T ss_pred             hccCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECC-CCcEEEEECCEEEEccCchhhHHH
Confidence            33466699999999999986532   2 345566542 366778999999999997766554

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PLN02268 probable polyamine oxidase

Probab=90.12  E-value=0.097  Score=62.32  Aligned_cols=34  Identities=21%  Similarity=0.244  Sum_probs=31.0

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhccccccccc
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLN  829 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~  829 (1074)
                      +|+|||||.+||+||+.|.+     +++|+.++.||.+.
T Consensus         2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~   40 (435)
T PLN02268          2 SVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVH   40 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceee
Confidence            49999999999999999997     79999999999764

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=90.11  E-value=1.1  Score=50.95  Aligned_cols=53  Identities=19%  Similarity=0.252  Sum_probs=44.1

Q ss_pred             hhhhhhHHHHhhhCCeEEEee-eEEEecCC--eEEEEeCCCCeeEEEcCeEEEccCCC
Q psy14927        842 KALTGGIAHLFKSNKVTQLNG-HGKITGPN--TVTVIKSDGSTEEVKTKNILIATGSE  896 (1074)
Q Consensus       842 ~~l~~~~~~~l~~~gV~~~~g-~v~~id~~--~~~v~~~~G~~~~i~~d~lIIATG~~  896 (1074)
                      ..+.+-+...+++.||+++++ +|..++..  .+.+.+++|  .++.+|.||||||..
T Consensus       111 ~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g--~~i~~d~lilAtGG~  166 (408)
T COG2081         111 SPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSG--ETVKCDSLILATGGK  166 (408)
T ss_pred             HHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCC--CEEEccEEEEecCCc
Confidence            567777888889999999999 57777654  688888998  589999999999954

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=90.02  E-value=0.79  Score=52.92  Aligned_cols=55  Identities=13%  Similarity=0.094  Sum_probs=43.5

Q ss_pred             hhhhhhHHHHhhhCCeEEEee-eEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        842 KALTGGIAHLFKSNKVTQLNG-HGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       842 ~~l~~~~~~~l~~~gV~~~~g-~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                      ..+.+-+...+++.||+++++ .|+.++...+.+.+.++. ..+.+|+||||||+.+
T Consensus        86 ~sVv~~L~~~l~~~gV~i~~~~~V~~i~~~~~~v~~~~~~-~~~~a~~vIlAtGG~s  141 (376)
T TIGR03862        86 APLLRAWLKRLAEQGVQFHTRHRWIGWQGGTLRFETPDGQ-STIEADAVVLALGGAS  141 (376)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEeCCcEEEEECCCc-eEEecCEEEEcCCCcc
Confidence            667777888889999999999 688886555777765431 3699999999999965

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=89.88  E-value=1.2  Score=41.79  Aligned_cols=80  Identities=19%  Similarity=0.139  Sum_probs=55.7

Q ss_pred             HHhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhC-----
Q psy14927          4 EETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARD-----   78 (1074)
Q Consensus         4 ~~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d-----   78 (1074)
                      ..+.++|++++|+..|+++-....                 .+...+..+.++|..+...|+++.|.++|..+-.     
T Consensus        10 ~~~~~~~~~~~A~~~~~~~~~~~~-----------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~   72 (119)
T TIGR02795        10 LLVLKAGDYADAIQAFQAFLKKYP-----------------KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS   72 (119)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCC-----------------CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC
Confidence            356778889999888887742210                 0011256777889999999999999999987532     


Q ss_pred             ------hhhhhhHhhccCCHHHHHHHHH
Q psy14927         79 ------YLSMVRVLCFLQDFSRAAELAN  100 (1074)
Q Consensus        79 ------~~~~vr~l~~~~~~~~a~~i~~  100 (1074)
                            +..+.+++..+|++++|.+..+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~  100 (119)
T TIGR02795        73 PKAPDALLKLGMSLQELGDKEKAKATLQ  100 (119)
T ss_pred             CcccHHHHHHHHHHHHhCChHHHHHHHH
Confidence                  2345566777888888877665

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1585|consensus

Probab=89.87  E-value=16  Score=38.89  Aligned_cols=152  Identities=16%  Similarity=0.091  Sum_probs=95.3

Q ss_pred             ChhHHHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcC-CCCCC
Q psy14927        173 EPDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSS-DWKSQ  251 (1074)
Q Consensus       173 ~~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~-~~~~~  251 (1074)
                      -|++|...|..|.+++||-+.+++.             .++--....+         ..-..-|..|+-.++.+ -|..-
T Consensus        33 ~yekAAvafRnAk~feKakdcLlkA-------------~~~yEnnrsl---------fhAAKayEqaamLake~~klsEv   90 (308)
T KOG1585|consen   33 LYEKAAVAFRNAKKFEKAKDCLLKA-------------SKGYENNRSL---------FHAAKAYEQAAMLAKELSKLSEV   90 (308)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHH-------------HHHHHhcccH---------HHHHHHHHHHHHHHHHHHHhHHH
Confidence            3788999999999999999977663             2221111111         11112245555555543 23444


Q ss_pred             hhHHHHHHHHHHccCCHHHHHHHHHHHHhHHHHhhcCHHHHHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHhhc
Q psy14927        252 PELLKSIISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHND-SMYETLKSSVVEKLAEVEIDEF  330 (1074)
Q Consensus       252 ~~~~~~i~~~Y~k~~~~~~aa~~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~  330 (1074)
                      ...+.++..+|.--|..+.|+-..++.|..  =|.-+-+.|+.+++.++..+++.+. ....+    +--+..++||+ .
T Consensus        91 vdl~eKAs~lY~E~GspdtAAmaleKAak~--lenv~Pd~AlqlYqralavve~~dr~~ma~e----l~gk~sr~lVr-l  163 (308)
T KOG1585|consen   91 VDLYEKASELYVECGSPDTAAMALEKAAKA--LENVKPDDALQLYQRALAVVEEDDRDQMAFE----LYGKCSRVLVR-L  163 (308)
T ss_pred             HHHHHHHHHHHHHhCCcchHHHHHHHHHHH--hhcCCHHHHHHHHHHHHHHHhccchHHHHHH----HHHHhhhHhhh-h
Confidence            566777788888889999999888888876  4788999999999999999987653 22222    33345677777 3


Q ss_pred             CChHHHhh---HHHHHHHHHhhccCc
Q psy14927        331 GNYEKGLG---ALNEAKRCLLKHNDS  353 (1074)
Q Consensus       331 ~~~~~a~~---~~~~~~~~~~~~~~~  353 (1074)
                      ..++.|+.   =..-+...+.-.|+.
T Consensus       164 ~kf~Eaa~a~lKe~~~~~~~~~y~~~  189 (308)
T KOG1585|consen  164 EKFTEAATAFLKEGVAADKCDAYNSQ  189 (308)
T ss_pred             HHhhHHHHHHHHhhhHHHHHhhcccH
Confidence            44444444   223334444444543

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=89.86  E-value=0.64  Score=55.84  Aligned_cols=88  Identities=16%  Similarity=0.081  Sum_probs=51.9

Q ss_pred             hhhhhhccccchHHHHHHHhh------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEe
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKIT  867 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~i  867 (1074)
                      ++|+|||||..|+.+|..+.+      +++...+..       .++.. .   .     ....+...||+|+.+ .++.+
T Consensus       283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~-------~~~~~-~---~-----e~~~~~~~GV~~~~~~~~~~i  346 (467)
T TIGR01318       283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEA-------NMPGS-R---R-----EVANAREEGVEFLFNVQPVYI  346 (467)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcc-------cCCCC-H---H-----HHHHHHhcCCEEEecCCcEEE
Confidence            449999999999999888765      233222111       01111 1   1     123355679999998 35555


Q ss_pred             c--C-CeEE-EEe---C---------------CCCeeEEEcCeEEEccCCCCC
Q psy14927        868 G--P-NTVT-VIK---S---------------DGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       868 d--~-~~~~-v~~---~---------------~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      .  . ..++ |++   .               .|+..++.+|.||+|+|..|.
T Consensus       347 ~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~  399 (467)
T TIGR01318       347 ECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPH  399 (467)
T ss_pred             EECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCC
Confidence            2  1 1121 111   1               133457999999999999874

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>KOG1276|consensus

Probab=89.79  E-value=0.11  Score=58.82  Aligned_cols=37  Identities=24%  Similarity=0.214  Sum_probs=32.3

Q ss_pred             chhhhhhccccchHHHHHHHhh-------hhhhhccccccccch
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVKLNL  830 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~~~~  830 (1074)
                      ..+|+|+|||.+||.+|++|++       ++||..++.||-+.-
T Consensus        11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS   54 (491)
T KOG1276|consen   11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS   54 (491)
T ss_pred             cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeee
Confidence            4459999999999999999999       679999999986643

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=89.78  E-value=0.48  Score=59.36  Aligned_cols=88  Identities=15%  Similarity=0.138  Sum_probs=50.0

Q ss_pred             hhhhhhccccchHHHHHHHhh------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeee-EEEe
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGH-GKIT  867 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~-v~~i  867 (1074)
                      ++|||||||..|+.+|..+.+      +++.....       ..++...    .+    +. .....||+|+++. ++.+
T Consensus       324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~-------~~mpa~~----~e----i~-~a~~eGV~i~~~~~~~~i  387 (652)
T PRK12814        324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRTR-------EEMPANR----AE----IE-EALAEGVSLRELAAPVSI  387 (652)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc-------ccCCCCH----HH----HH-HHHHcCCcEEeccCcEEE
Confidence            449999999999999998876      22221110       0111111    11    11 1224699998873 3343


Q ss_pred             c--CCeEEEE---e---------------CCCCeeEEEcCeEEEccCCCCC
Q psy14927        868 G--PNTVTVI---K---------------SDGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       868 d--~~~~~v~---~---------------~~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      .  .+.+.+.   +               .+|+..++.+|.||+|+|..|.
T Consensus       388 ~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~  438 (652)
T PRK12814        388 ERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVD  438 (652)
T ss_pred             EecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCC
Confidence            2  2222221   1               1233457999999999999874

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=89.76  E-value=2.2  Score=50.69  Aligned_cols=60  Identities=20%  Similarity=0.238  Sum_probs=45.6

Q ss_pred             CHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe--EEEEEeeccCCCCceEEEcCEEEEccCCcccC
Q psy14927        947 DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN--ITVTIENVKDPTKKEELSCDALLVCVGRRPYT 1012 (1074)
Q Consensus       947 ~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 1012 (1074)
                      ..++.+.+.+.++..|..+++++.|.+|..++++  +.|++.+      ++++.++.||......|..
T Consensus       231 ~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~------Ge~i~a~~VV~~~s~~p~~  292 (443)
T PTZ00363        231 LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEG------GEVAKCKLVICDPSYFPDK  292 (443)
T ss_pred             HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECC------CcEEECCEEEECccccccc
Confidence            3467777878888999999999999999765443  3455443      4678999999988777653

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=89.68  E-value=0.59  Score=48.98  Aligned_cols=61  Identities=23%  Similarity=0.439  Sum_probs=43.5

Q ss_pred             CHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCC--cccCC
Q psy14927        947 DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGR--RPYTH 1013 (1074)
Q Consensus       947 ~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~--~p~~~ 1013 (1074)
                      .+++.+++....++.+++++++++|+++..++++..|++.+      ++++.+|.||+|+|.  .|...
T Consensus        81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~------~~~~~a~~VVlAtG~~~~p~~p  143 (203)
T PF13738_consen   81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRD------GRTIRADRVVLATGHYSHPRIP  143 (203)
T ss_dssp             HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETT------S-EEEEEEEEE---SSCSB---
T ss_pred             HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEe------cceeeeeeEEEeeeccCCCCcc
Confidence            45677888888999999999999999999988887777665      368899999999996  55443

...

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=89.56  E-value=0.11  Score=62.45  Aligned_cols=50  Identities=22%  Similarity=0.427  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccC
Q psy14927        950 VAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVG 1007 (1074)
Q Consensus       950 ~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G 1007 (1074)
                      +.+.+.+.+..  ++|++++.|++|+..++++.|.+.+      +.++.+|.||+++.
T Consensus       228 l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~~~v~~~~------g~~~~ad~VI~a~p  277 (463)
T PRK12416        228 IIDRLEEVLTE--TVVKKGAVTTAVSKQGDRYEISFAN------HESIQADYVVLAAP  277 (463)
T ss_pred             HHHHHHHhccc--ccEEcCCEEEEEEEcCCEEEEEECC------CCEEEeCEEEECCC
Confidence            44444444433  5799999999999877776665443      34689999999875

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=89.53  E-value=0.12  Score=55.15  Aligned_cols=31  Identities=23%  Similarity=0.302  Sum_probs=27.2

Q ss_pred             CCEEEecccCCCCCcHHHHHHHHHHHHHHhhC
Q psy14927       1041 PNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus      1041 ~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I~~ 1072 (1074)
                      -++|++||-+.++ .+..|...|..+|.+|++
T Consensus       299 ~~l~~cGDwc~Gg-rVEgA~LSGlAaA~~i~~  329 (331)
T COG3380         299 LPLYACGDWCAGG-RVEGAVLSGLAAADHILN  329 (331)
T ss_pred             CceeeecccccCc-chhHHHhccHHHHHHHHh
Confidence            4699999988875 689999999999999975

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=89.52  E-value=0.13  Score=62.16  Aligned_cols=56  Identities=16%  Similarity=0.327  Sum_probs=43.7

Q ss_pred             CHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927        947 DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus       947 ~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
                      ...+.+.+.+.+++.|++|+++++|++|..+++. +.+...+      +..+++|.||.....
T Consensus       223 ~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~------g~~~~ad~vv~~~~~  279 (487)
T COG1233         223 MGALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSD------GENIEADAVVSNADP  279 (487)
T ss_pred             HHHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccc------cceeccceeEecCch
Confidence            3567788889999999999999999999987654 4444332      368999999987665

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=89.40  E-value=13  Score=37.71  Aligned_cols=46  Identities=26%  Similarity=0.133  Sum_probs=29.6

Q ss_pred             hCccchhhHHHHHHHhhh--------hHHHHHHHHHHHHhhhcHHHHHHHHHHh
Q psy14927        605 SNKALKIITKQIILILII--------YRVLLKWWAQYIESTEDMDLAMKYYEEA  650 (1074)
Q Consensus       605 ~~~i~~~~~~~~~~~~~~--------~~~l~~~~a~~~e~~~~~~~A~~~y~~a  650 (1074)
                      ++-||+.|.-|++.....        ........|......|+|++|..+|.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a   61 (172)
T PRK02603          8 DNFIDKSFTVMADLILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEA   61 (172)
T ss_pred             cchHhHHHHHHHHHHHHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            344667777777733322        1145667777777778888888877765

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=89.37  E-value=0.86  Score=51.17  Aligned_cols=85  Identities=20%  Similarity=0.213  Sum_probs=56.6

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhC-CeEEEee-eEEEec
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSN-KVTQLNG-HGKITG  868 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~-gV~~~~g-~v~~id  868 (1074)
                      +|+|||||...+..|+.|++     +++-+.+.         +..         .....+.+.+. +|.++++ .+..+.
T Consensus       145 ~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~---------~ra---------~~~~~~~l~~~~~i~~~~~~~i~ei~  206 (305)
T COG0492         145 DVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDE---------FRA---------EEILVERLKKNVKIEVLTNTVVKEIL  206 (305)
T ss_pred             eEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcc---------cCc---------CHHHHHHHHhcCCeEEEeCCceeEEe
Confidence            59999999999999999999     22222111         111         11133344444 8999999 567776


Q ss_pred             CCe-EEEEeCC--CCeeEEEcCeEEEccCCCCC
Q psy14927        869 PNT-VTVIKSD--GSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       869 ~~~-~~v~~~~--G~~~~i~~d~lIIATG~~p~  898 (1074)
                      .+. -.|++++  |....+..|.|+++.|..|.
T Consensus       207 G~~v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~  239 (305)
T COG0492         207 GDDVEGVVLKNVKGEEKELPVDGVFIAIGHLPN  239 (305)
T ss_pred             cCccceEEEEecCCceEEEEeceEEEecCCCCc
Confidence            643 2333333  65678999999999999985

>KOG1174|consensus

Probab=89.35  E-value=3.2  Score=47.01  Aligned_cols=134  Identities=16%  Similarity=0.160  Sum_probs=99.3

Q ss_pred             HHHHHHHhhhcHHHHHHHHHHh--------hCHHHHHHHHHHcCCHHHHHHHHHh----cCCcHHHH-HHH--HHHHhcC
Q psy14927        629 WWAQYIESTEDMDLAMKYYEEA--------RDYLSMVRVLCFLQDFSRAAELANA----SGDTAAAY-HLA--RQYENSG  693 (1074)
Q Consensus       629 ~~a~~~e~~~~~~~A~~~y~~a--------g~~~~ai~~~~~~~~~~~a~~v~~~----~~~~~~~~-~~A--~~~~~~g  693 (1074)
                      --|..+-.-++..+|+-+|-.|        ..|+..|++|.-.+.+.+|.-+++.    .+.+..+. .++  -+|.+--
T Consensus       339 lKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~  418 (564)
T KOG1174|consen  339 LKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPR  418 (564)
T ss_pred             hccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCch
Confidence            3466677788999999999988        5677889999999999999988852    23333333 332  2444445


Q ss_pred             CHHHHHHHHHHcCCHH----HHHHH-------hccHHHHHHHHHHhCCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHhC
Q psy14927        694 QFDEAIHFYSVAGSCG----NAVRL-------CGQLDAVESIASELNVQ-SDQDLILKCASYFARREHHDRAVQMYAIAR  761 (1074)
Q Consensus       694 ~~~~A~~~~~kag~~~----~Av~m-------a~~w~~a~~~A~~~~~~-~~~~~~~~~a~~~~~~~~~~~Ai~~y~~ag  761 (1074)
                      --|.|..||.++-..+    .||..       -+...++..+-+.|+.. .+..+.+.+|+.+...+++..|...|..+-
T Consensus       419 ~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL  498 (564)
T KOG1174|consen  419 MREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL  498 (564)
T ss_pred             hHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            5688999998885443    45533       48888999999998754 444788999999999999999999988764


Q ss_pred             C
Q psy14927        762 R  762 (1074)
Q Consensus       762 ~  762 (1074)
                      .
T Consensus       499 r  499 (564)
T KOG1174|consen  499 R  499 (564)
T ss_pred             h
Confidence            3

>KOG1156|consensus

Probab=89.32  E-value=7.2  Score=46.79  Aligned_cols=213  Identities=18%  Similarity=0.098  Sum_probs=0.0

Q ss_pred             hccCHHHHHHHHHH-------------------hhChhhhhhH-hhccCCHHHHHHHHH-----hcCChHHHHHHHHHHH
Q psy14927         62 STEDMDLAMKYYEE-------------------ARDYLSMVRV-LCFLQDFSRAAELAN-----ASGDTAAAYHLARQYE  116 (1074)
Q Consensus        62 ~~~~~~~A~~~y~~-------------------a~d~~~~vr~-l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~  116 (1074)
                      +...|..+++||+.                   -||-.++--+ |+.+|+-++|...|+     +.++.-.+.-+|-++.
T Consensus         7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R   86 (700)
T KOG1156|consen    7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR   86 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh


Q ss_pred             hcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCc-hhHHHHH----HHHcc--CC---hhHHHHHHHHhCC
Q psy14927        117 NSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGP-SEQIEAA----TYLET--IE---PDKAVLLYHKAGA  186 (1074)
Q Consensus       117 ~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~-~~~~~~A----~~~e~--~~---~~~A~~ly~kaG~  186 (1074)
                      .--+|++||+.|+.|.+|+        .+..+-+-+++..-.| .+|...+    ++|+-  ++   +..+.--++.-|+
T Consensus        87 ~dK~Y~eaiKcy~nAl~~~--------~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~  158 (700)
T KOG1156|consen   87 SDKKYDEAIKCYRNALKIE--------KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE  158 (700)
T ss_pred             hhhhHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH


Q ss_pred             hHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHH---HHhcCCCCCChhHHHHH-----
Q psy14927        187 LHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAAN---YLQSSDWKSQPELLKSI-----  258 (1074)
Q Consensus       187 ~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~---yl~~~~~~~~~~~~~~i-----  258 (1074)
                      +..|+.+.-.             .-+....+-+.+..-+---.+.+-.+-..++.   -|+.+ ....|+...++     
T Consensus       159 y~~A~~il~e-------------f~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L-~~~e~~i~Dkla~~e~  224 (700)
T KOG1156|consen  159 YKMALEILEE-------------FEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL-LDNEKQIVDKLAFEET  224 (700)
T ss_pred             HHHHHHHHHH-------------HHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH-HhhhhHHHHHHHHhhh


Q ss_pred             -HHHHHccCCHHHHHHHHHHHHhHHHHhhcCHHHHHHHH
Q psy14927        259 -ISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGAL  296 (1074)
Q Consensus       259 -~~~Y~k~~~~~~aa~~~~~~a~~ei~e~~~y~~a~~~l  296 (1074)
                       ..+|++.+++++|..+|...-..==+.+.-|+..+..|
T Consensus       225 ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~l  263 (700)
T KOG1156|consen  225 KADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKAL  263 (700)
T ss_pred             HHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHH

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.31  E-value=0.26  Score=59.53  Aligned_cols=71  Identities=14%  Similarity=0.096  Sum_probs=46.5

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEec
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITG  868 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id  868 (1074)
                      .++|+|||+|+.|+++|..|++     ++++..+.                   .......+.+++.||+++.|....  
T Consensus        16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~-------------------~~~~~~~~~l~~~gv~~~~~~~~~--   74 (480)
T PRK01438         16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD-------------------ERHRALAAILEALGATVRLGPGPT--   74 (480)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-------------------hhhHHHHHHHHHcCCEEEECCCcc--
Confidence            3459999999999999988877     22222110                   011123455667899998884211  


Q ss_pred             CCeEEEEeCCCCeeEEEcCeEEEccCCCCC
Q psy14927        869 PNTVTVIKSDGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       869 ~~~~~v~~~~G~~~~i~~d~lIIATG~~p~  898 (1074)
                           .        ...+|.||+++|..|.
T Consensus        75 -----~--------~~~~D~Vv~s~Gi~~~   91 (480)
T PRK01438         75 -----L--------PEDTDLVVTSPGWRPD   91 (480)
T ss_pred             -----c--------cCCCCEEEECCCcCCC
Confidence                 0        2458999999999873

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=89.27  E-value=1.1  Score=53.14  Aligned_cols=97  Identities=15%  Similarity=0.031  Sum_probs=0.0

Q ss_pred             hhccccchHHHHHHHhh-----hhhhhcc--ccccccchhhh--------------------------------------
Q psy14927        799 NTLGNCAAVQANYHLAT-----KLFTQAG--DKGVKLNLETM--------------------------------------  833 (1074)
Q Consensus       799 iiGgG~AGl~aA~~la~-----~l~e~~~--~~g~~~~~~~~--------------------------------------  833 (1074)
                      |||+|.+|+.||+++++     +++|+.+  ..|+......-                                      
T Consensus         1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~~~~Gg~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~   80 (432)
T TIGR02485         1 VIGGGLAGLCAAIEARRAGASVLLLEAAPRARRGGNARHGRNIRVAHDIPTDFQRDSYPAEEFERDLAPVTGGRTNESLS   80 (432)
T ss_pred             CCcccHHHHHHHHHHHhCCCcEEEEeCCCCCcCCcCcccccchhhcccchhhhhhhhccHHHHHHHHHHhhCCCCCHHHH


Q ss_pred             ------hhhhhHHHhh----------------------------hhhhHHHHhhhCCeEEEee-eEEEec----CCeEEE
Q psy14927        834 ------MGTKSAAVKA----------------------------LTGGIAHLFKSNKVTQLNG-HGKITG----PNTVTV  874 (1074)
Q Consensus       834 ------~~~~~~~~~~----------------------------l~~~~~~~l~~~gV~~~~g-~v~~id----~~~~~v  874 (1074)
                            ....-....+                            +...+.+.+++.|++++++ .|+.+.    ...+.-
T Consensus        81 ~~~~~~s~~~i~wl~~~Gv~f~~~~~g~~~~~~~~~~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~g  160 (432)
T TIGR02485        81 RLGIGRGSRDLRWAFAHGVHLQPPAAGNLPYSRRTAFLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDG  160 (432)
T ss_pred             HHHHhcchhHHHHHHhCCceeeecCCCCccccCceeeecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEE


Q ss_pred             EeCCCCeeEEEcCeEEEccCC
Q psy14927        875 IKSDGSTEEVKTKNILIATGS  895 (1074)
Q Consensus       875 ~~~~G~~~~i~~d~lIIATG~  895 (1074)
                      ....++...+.++.||||||.
T Consensus       161 v~~~~~~~~i~ak~VIlAtGG  181 (432)
T TIGR02485       161 PLTTVGTHRITTQALVLAAGG  181 (432)
T ss_pred             EEEcCCcEEEEcCEEEEcCCC

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=89.20  E-value=11  Score=46.28  Aligned_cols=197  Identities=11%  Similarity=0.054  Sum_probs=120.2

Q ss_pred             CcccCHHHHHHHHHHHHHHHHHHHH---HHhhhCccchhhHHHHHHHhhhhHHHHHHHHHHHHh-hhcHHHHHHHHHHhh
Q psy14927        576 GVKLNLETMMGTKSAAVKALTGGIA---HLFKSNKALKIITKQIILILIIYRVLLKWWAQYIES-TEDMDLAMKYYEEAR  651 (1074)
Q Consensus       576 ~~~~~w~~~~~~~~~~i~~l~~~~~---~~l~~~~i~~~~~~~~~~~~~~~~~l~~~~a~~~e~-~~~~~~A~~~y~~ag  651 (1074)
                      ..++.|+-.-+.++..++.+...+.   ..++..||-.=++-.-.|.....+   -....|... ..++-++.-+|+.-|
T Consensus       341 ~~~i~WA~hS~~qe~Ll~~~~~~~~~~W~~~r~~gv~~W~~~~~~Lr~~~E~---iAr~~~~~~~~~dp~~~al~YlAl~  417 (631)
T PF12234_consen  341 TRDIAWAFHSDSQEELLSLVPPQIKLSWEEARELGVGFWLRSIESLRSQFEK---IARNEFQKNDTKDPSDCALFYLALG  417 (631)
T ss_pred             HHHHHHHHhccCHHHHHHHhhhhccCCHHHHHhhCCEEeecCHHHHHHHHHH---HHHHHHhhccCCCHHHHHHHHHHhc
Confidence            3467888887777777777776543   345555554111111111111111   112334432 456777777888888


Q ss_pred             CHHHHHHHHH----HcCCHHHHHHHHHhcCCcHHHH----HHHHHHHhcCCHHHHHHHHHHcCCHHHHHHH----hccHH
Q psy14927        652 DYLSMVRVLC----FLQDFSRAAELANASGDTAAAY----HLARQYENSGQFDEAIHFYSVAGSCGNAVRL----CGQLD  719 (1074)
Q Consensus       652 ~~~~ai~~~~----~~~~~~~a~~v~~~~~~~~~~~----~~A~~~~~~g~~~~A~~~~~kag~~~~Av~m----a~~w~  719 (1074)
                      +..-..-+|.    +.++ .+..+.....-+++.-+    .=|-.+-....|+.|..||+.||++++||+.    .++.+
T Consensus       418 Kk~vL~~L~k~a~~~~~~-~k~~~Fl~ndF~~~rwr~AAlKNAyaLlsk~Ry~~AAaFFLLag~l~dAv~V~~~~l~D~q  496 (631)
T PF12234_consen  418 KKKVLAGLWKMASWHKEQ-QKMAKFLSNDFTEPRWRTAALKNAYALLSKHRYEYAAAFFLLAGSLKDAVNVCLRQLNDPQ  496 (631)
T ss_pred             cHHHHHHHHHhhhccccc-HHHHHHHhhcCCChHHHHHHHHhHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHHccChh
Confidence            7655555565    2222 23344443332222222    3377778888999999999999999999999    47788


Q ss_pred             HHHHHHHHhCCcccHHHHHHHHHHH-----HHcCCHHHHHHHHHHhCCHHHHHHHHHHcCCCC
Q psy14927        720 AVESIASELNVQSDQDLILKCASYF-----ARREHHDRAVQMYAIARRYDQALSLIQTKHVPL  777 (1074)
Q Consensus       720 ~a~~~A~~~~~~~~~~~~~~~a~~~-----~~~~~~~~Ai~~y~~ag~~~~Ai~~~~~~~~~~  777 (1074)
                      =|+-+++-+..+.- +++..+-+..     ...|++=.+--+|-..++++.|++.+.....+.
T Consensus       497 LAi~i~Rl~e~d~g-p~~~~ll~~~vLp~a~~~~d~wl~s~~~W~L~~~~~ai~~Li~~~~~~  558 (631)
T PF12234_consen  497 LAIAIARLYEGDNG-PVLKKLLEEHVLPEAIKEGDRWLASWAFWMLGDYDEAIRALISPPIDL  558 (631)
T ss_pred             HHHHHHHHHcCCCc-hHHHHHHHHhhhccccccCCHHHHHHHHHhcCCHHHHHHHHhcCcccc
Confidence            89999998855532 3333333222     245555566667778999999999988876644

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2665|consensus

Probab=89.20  E-value=0.76  Score=50.12  Aligned_cols=66  Identities=18%  Similarity=0.258  Sum_probs=45.6

Q ss_pred             HHHHHHhCCCEEEeCceEEEEEecCCe---EEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCC
Q psy14927        954 FQRILGKQGMQFKLGTKVTGASKSGDN---ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDE 1026 (1074)
Q Consensus       954 ~~~~l~~~gV~i~~~~~v~~i~~~~~~---~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~ 1026 (1074)
                      +-+.++..|-.++++.+++.+....+.   .-+.+.+    |+++++.+..++-|+|...+.-   .+..|+++|+
T Consensus       202 ~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~n----gk~ee~r~~~~vtc~gl~sdr~---aa~sgc~~dP  270 (453)
T KOG2665|consen  202 FGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLN----GKGEEKRTKNVVTCAGLQSDRC---AALSGCELDP  270 (453)
T ss_pred             HHHHHHHhcccccccceeccchhccCCCCCCceEEec----CccceeEEeEEEEeccccHhHH---HHHhCCCCCC
Confidence            344578889999999999999875543   2233344    6688999999999999875432   2344555554

>KOG2852|consensus

Probab=89.18  E-value=0.37  Score=51.92  Aligned_cols=49  Identities=12%  Similarity=0.146  Sum_probs=31.6

Q ss_pred             HHHhhhCCeEEEeeeEEEecCCeEEEEe---C--CCCeeEEEcCeEEEccCCCC
Q psy14927        849 AHLFKSNKVTQLNGHGKITGPNTVTVIK---S--DGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       849 ~~~l~~~gV~~~~g~v~~id~~~~~v~~---~--~G~~~~i~~d~lIIATG~~p  897 (1074)
                      .+..++.||+++.|.|..+..+..++..   .  .+.......+.+|+|.|.+.
T Consensus       155 sea~k~~~V~lv~Gkv~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWT  208 (380)
T KOG2852|consen  155 SEAEKRGGVKLVFGKVKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWT  208 (380)
T ss_pred             HHHHhhcCeEEEEeeeEEeecccccccccchhhhcCceEEeeeeEEEEecCCCc
Confidence            3444556799999999888533222221   1  11125678999999999874

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=89.17  E-value=2.8  Score=43.08  Aligned_cols=83  Identities=27%  Similarity=0.328  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHhhCh-----------hhhhhHhhccCCHHHHHHHHHh-------cCChHHHH---
Q psy14927         51 VLLKWWAQYIESTEDMDLAMKYYEEARDY-----------LSMVRVLCFLQDFSRAAELANA-------SGDTAAAY---  109 (1074)
Q Consensus        51 ~l~~~~a~~~e~~~~~~~A~~~y~~a~d~-----------~~~vr~l~~~~~~~~a~~i~~~-------~~~~~~~~---  109 (1074)
                      ..+...|+++.+.|+++.|.++|.++.|+           .+++|+....+||..+...+.+       .++.+.-.   
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            45667899999999999999999999998           5788888888888777666542       23333222   


Q ss_pred             -HHHHHHHhcCChHHHHHHHHHhCC
Q psy14927        110 -HLARQYENSGQFDEAIHFYSVAGS  133 (1074)
Q Consensus       110 -~la~~~~~~g~~~~Ai~~y~~a~~  133 (1074)
                       .-|-++..+++|..|.+.|..+-.
T Consensus       117 ~~~gL~~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  117 VYEGLANLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             HHHHHHHHHhchHHHHHHHHHccCc
Confidence             233556678888888888877643

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1125|consensus

Probab=89.17  E-value=7.1  Score=46.25  Aligned_cols=240  Identities=17%  Similarity=0.184  Sum_probs=0.0

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhh
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVR   84 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr   84 (1074)
                      +|++.|.+.+|+-.||-+=..+                    +++-+-|+|+|-.--+..+-..|+.+..+|=+.     
T Consensus       294 ~lm~nG~L~~A~LafEAAVkqd--------------------P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L-----  348 (579)
T KOG1125|consen  294 NLMKNGDLSEAALAFEAAVKQD--------------------PQHAEAWQKLGITQAENENEQNAISALRRCLEL-----  348 (579)
T ss_pred             HHHhcCCchHHHHHHHHHHhhC--------------------hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc-----


Q ss_pred             HhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHHH
Q psy14927         85 VLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIE  164 (1074)
Q Consensus        85 ~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~  164 (1074)
                                      ++++-.+..-||=.|...|.-.+|+++                      +-.|+...++..++.
T Consensus       349 ----------------dP~NleaLmaLAVSytNeg~q~~Al~~----------------------L~~Wi~~~p~y~~l~  390 (579)
T KOG1125|consen  349 ----------------DPTNLEALMALAVSYTNEGLQNQALKM----------------------LDKWIRNKPKYVHLV  390 (579)
T ss_pred             ----------------CCccHHHHHHHHHHHhhhhhHHHHHHH----------------------HHHHHHhCccchhcc


Q ss_pred             HH----------HHHccCChhHHHHHHHHhCChHH---------HHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHH
Q psy14927        165 AA----------TYLETIEPDKAVLLYHKAGALHK---------ALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIF  225 (1074)
Q Consensus       165 ~A----------~~~e~~~~~~A~~ly~kaG~~~k---------Al~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~  225 (1074)
                      .+          .+.....+..-.++|..+++...         +|-+++.+                   +|+.+++|+
T Consensus       391 ~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l-------------------s~efdraiD  451 (579)
T KOG1125|consen  391 SAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNL-------------------SGEFDRAVD  451 (579)
T ss_pred             ccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhc-------------------chHHHHHHH


Q ss_pred             hhhhc-----chHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHccCCHHHHH-----HHHHHHHhHHHHhhcCHHHHHHH
Q psy14927        226 FAGVS-----RMKEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLLA-----NFYVSCAQVEIDEFGNYEKGLGA  295 (1074)
Q Consensus       226 ~a~~~-----r~~~l~~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~aa-----~~~~~~a~~ei~e~~~y~~a~~~  295 (1074)
                      +-..+     .+..||.+++--|-+.      +--.-++..|.++.+..-==     +..+.|.+.     |.|++|...
T Consensus       452 cf~~AL~v~Pnd~~lWNRLGAtLAN~------~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNl-----G~ykEA~~h  520 (579)
T KOG1125|consen  452 CFEAALQVKPNDYLLWNRLGATLANG------NRSEEAISAYNRALQLQPGYVRVRYNLGISCMNL-----GAYKEAVKH  520 (579)
T ss_pred             HHHHHHhcCCchHHHHHHhhHHhcCC------cccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhh-----hhHHHHHHH


Q ss_pred             HHHHHHHHHhcCCCchHHHH-HHHHHHHHHHHHhhcCChHHHhh
Q psy14927        296 LNEAKRCLLKHNDSMYETLK-SSVVEKLAEVEIDEFGNYEKGLG  338 (1074)
Q Consensus       296 l~~a~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~  338 (1074)
                      |-+|+..-++........+. .++...+.-.++. ++..|.+..
T Consensus       521 lL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~-~~~~D~l~~  563 (579)
T KOG1125|consen  521 LLEALSMQRKSRNHNKAPMASENIWQTLRLALSA-MNRSDLLQE  563 (579)
T ss_pred             HHHHHHhhhcccccccCCcchHHHHHHHHHHHHH-cCCchHHHH

>KOG0550|consensus

Probab=89.11  E-value=5.5  Score=45.33  Aligned_cols=143  Identities=16%  Similarity=0.063  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHhhC------------hhhhhhHhhccCCHHHHHHHHHhcCCh-----HHHHHHHHH
Q psy14927         52 LLKWWAQYIESTEDMDLAMKYYEEARD------------YLSMVRVLCFLQDFSRAAELANASGDT-----AAAYHLARQ  114 (1074)
Q Consensus        52 l~~~~a~~~e~~~~~~~A~~~y~~a~d------------~~~~vr~l~~~~~~~~a~~i~~~~~~~-----~~~~~la~~  114 (1074)
                      -|+.-|.-+-..|.|..|.++|..|=.            |.+..-+...+|++.+|..-+.+.-..     -+...-|+.
T Consensus       251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c  330 (486)
T KOG0550|consen  251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC  330 (486)
T ss_pred             HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence            455558888889999999999998644            344444556789998888888754333     244566788


Q ss_pred             HHhcCChHHHHHHHHHhCChHHHH---------HHHHHhCchHHHHH-Hh--hhcCchhHH------HHHHHH-------
Q psy14927        115 YENSGQFDEAIHFYSVAGSCGNAV---------RLCKEQALDDQLWN-LA--LSAGPSEQI------EAATYL-------  169 (1074)
Q Consensus       115 ~~~~g~~~~Ai~~y~~a~~~~~A~---------~la~~~~~~~~~~~-l~--~~~~~~~~~------~~A~~~-------  169 (1074)
                      +...++|++||+.|.++.+.+.-.         +++-+.-.+.++.. |+  ...+..+..      .+..+.       
T Consensus       331 ~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq  410 (486)
T KOG0550|consen  331 HLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQ  410 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchh
Confidence            999999999999999876654321         11112222333332 22  222222111      112222       


Q ss_pred             -c-cCChhHHHHHHHHhCChHHHHHHH
Q psy14927        170 -E-TIEPDKAVLLYHKAGALHKALDLA  194 (1074)
Q Consensus       170 -e-~~~~~~A~~ly~kaG~~~kAl~l~  194 (1074)
                       | +..|.++++.|...+++.++.+..
T Consensus       411 ~eaE~kFkevgeAy~il~d~~kr~r~d  437 (486)
T KOG0550|consen  411 KEAEAKFKEVGEAYTILSDPMKRVRFD  437 (486)
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHhhcc
Confidence             1 234677888888888888887654

>PRK15331 chaperone protein SicA; Provisional

Probab=88.75  E-value=8.5  Score=38.72  Aligned_cols=149  Identities=14%  Similarity=0.064  Sum_probs=0.0

Q ss_pred             CChHHhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHH--HHHHHhccCHHHHHHHHHHhhC
Q psy14927          1 MKEEETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWW--AQYIESTEDMDLAMKYYEEARD   78 (1074)
Q Consensus         1 ~~~~~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--a~~~e~~~~~~~A~~~y~~a~d   78 (1074)
                      |...+-.+..++.+.+..--..|    .-+.+           +...++..|-.-|  |-.+...|++++|..+|     
T Consensus         1 ~~~~~~~~~~~~~~~i~~al~~G----~tlk~-----------l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F-----   60 (165)
T PRK15331          1 MDYQNNVSEERVAEMIWDAVSEG----ATLKD-----------VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFF-----   60 (165)
T ss_pred             CCcchhhhHHHHHHHHHHHHHCC----CCHHH-----------HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH-----


Q ss_pred             hhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcC
Q psy14927         79 YLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAG  158 (1074)
Q Consensus        79 ~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~  158 (1074)
                           |+||..+-+           +..-..-||-.+...+++++||.+|..+...+                   .+.+
T Consensus        61 -----~~L~~~d~~-----------n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-------------------~~dp  105 (165)
T PRK15331         61 -----RFLCIYDFY-----------NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-------------------KNDY  105 (165)
T ss_pred             -----HHHHHhCcC-----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-------------------cCCC


Q ss_pred             chhHHHHHHHHccCChhHHHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHH
Q psy14927        159 PSEQIEAATYLETIEPDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVM  238 (1074)
Q Consensus       159 ~~~~~~~A~~~e~~~~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~  238 (1074)
                      ...             --|+..|+.-|+..+|.+.+..                             ....+...+|-.+
T Consensus       106 ~p~-------------f~agqC~l~l~~~~~A~~~f~~-----------------------------a~~~~~~~~l~~~  143 (165)
T PRK15331        106 RPV-------------FFTGQCQLLMRKAAKARQCFEL-----------------------------VNERTEDESLRAK  143 (165)
T ss_pred             Ccc-------------chHHHHHHHhCCHHHHHHHHHH-----------------------------HHhCcchHHHHHH


Q ss_pred             HHHHHhcC
Q psy14927        239 AANYLQSS  246 (1074)
Q Consensus       239 aa~yl~~~  246 (1074)
                      |..||..+
T Consensus       144 A~~~L~~l  151 (165)
T PRK15331        144 ALVYLEAL  151 (165)
T ss_pred             HHHHHHHH

>PLN02529 lysine-specific histone demethylase 1

Probab=88.28  E-value=0.19  Score=62.87  Aligned_cols=37  Identities=14%  Similarity=0.111  Sum_probs=32.3

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccch
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNL  830 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~  830 (1074)
                      +++|+|||||++|++||+.|++     +++|+.+..||.+..
T Consensus       160 ~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t  201 (738)
T PLN02529        160 EGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYT  201 (738)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceee
Confidence            4569999999999999999998     899999988887643

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=88.27  E-value=0.51  Score=57.34  Aligned_cols=95  Identities=13%  Similarity=0.112  Sum_probs=59.7

Q ss_pred             chhhhhhccccchHHHHHHHhhhhhhhccccccccchhhhhhhhh-HHHhhh-hhhHHHHhhhCCeEEEeeeEE-Eec--
Q psy14927        794 RQVVLNTLGNCAAVQANYHLATKLFTQAGDKGVKLNLETMMGTKS-AAVKAL-TGGIAHLFKSNKVTQLNGHGK-ITG--  868 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~~l~e~~~~~g~~~~~~~~~~~~~-~~~~~l-~~~~~~~l~~~gV~~~~g~v~-~id--  868 (1074)
                      +++-+|||||--|+.+|..|..        .|....+..+.+..- ..++.- -.-+...+.+.|++|+++..+ .+.  
T Consensus       145 ~~~avVIGGGLLGlEaA~~L~~--------~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g~  216 (793)
T COG1251         145 KKKAVVIGGGLLGLEAARGLKD--------LGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVGE  216 (793)
T ss_pred             cCCcEEEccchhhhHHHHHHHh--------CCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhcC
Confidence            4447889999999999999988        111111111111110 001111 122567777889999998432 222  


Q ss_pred             CCeEEEEeCCCCeeEEEcCeEEEccCCCCC
Q psy14927        869 PNTVTVIKSDGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       869 ~~~~~v~~~~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      .....+.++||  ..+.+|-||.|+|.+|.
T Consensus       217 ~~~~~vr~~DG--~~i~ad~VV~a~GIrPn  244 (793)
T COG1251         217 DKVEGVRFADG--TEIPADLVVMAVGIRPN  244 (793)
T ss_pred             cceeeEeecCC--CcccceeEEEecccccc
Confidence            22345667888  78999999999999984

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=88.24  E-value=3  Score=46.22  Aligned_cols=57  Identities=18%  Similarity=0.327  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927        948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus       948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
                      ..+.+.+.+.+.+.|++++.+++++++..+++++.+.+.+     ++.++.+|.||.|+|..
T Consensus        91 ~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~~~a~~vv~a~G~~  147 (295)
T TIGR02032        91 DAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRG-----GEGTVTAKIVIGADGSR  147 (295)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcC-----ccEEEEeCEEEECCCcc
Confidence            4566677778888999999999999988766666665543     24579999999999964

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=88.15  E-value=4  Score=46.18  Aligned_cols=114  Identities=17%  Similarity=0.189  Sum_probs=89.6

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccchh----hhHhh--hcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhC
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQHV----PRMLL--ENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARD   78 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d   78 (1074)
                      .|-.+|+...|.++-.+=.-.|.+.    .+.|.  ++|+.|+.+-.+..+|-=+.-+.+.+...|+..+|.++-.+..|
T Consensus       186 ~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~skKsPIGyepFv~~~~~~~~~~eA~~yI~k~~~  265 (319)
T PF04840_consen  186 KLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKSKKSPIGYEPFVEACLKYGNKKEASKYIPKIPD  265 (319)
T ss_pred             HHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhCCCCCCChHHHHHHHHHCCCHHHHHHHHHhCCh
Confidence            4556788888887755544444332    11222  48999999998888898888889999999999999999999888


Q ss_pred             hhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q psy14927         79 YLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSG  119 (1074)
Q Consensus        79 ~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g  119 (1074)
                       ...|++|...|+|.+|.+.+.+.+|.+....|=+.+-..+
T Consensus       266 -~~rv~~y~~~~~~~~A~~~A~~~kd~~~L~~i~~~~~~~~  305 (319)
T PF04840_consen  266 -EERVEMYLKCGDYKEAAQEAFKEKDIDLLKQILKRCPGNN  305 (319)
T ss_pred             -HHHHHHHHHCCCHHHHHHHHHHcCCHHHHHHHHHHCCCCC
Confidence             8999999999999999999999999888777766554433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG0685|consensus

Probab=88.00  E-value=0.17  Score=58.37  Aligned_cols=34  Identities=12%  Similarity=0.143  Sum_probs=30.8

Q ss_pred             hhhhhccccchHHHHHHHhh------hhhhhccccccccc
Q psy14927        796 VVLNTLGNCAAVQANYHLAT------KLFTQAGDKGVKLN  829 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~------~l~e~~~~~g~~~~  829 (1074)
                      +|||||||.||++||..|-.      +++|..++.||.+.
T Consensus        23 kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~   62 (498)
T KOG0685|consen   23 KIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIH   62 (498)
T ss_pred             eEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEe
Confidence            49999999999999999986      89999999999764

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=87.63  E-value=0.18  Score=60.59  Aligned_cols=34  Identities=24%  Similarity=0.276  Sum_probs=29.7

Q ss_pred             hhhhhhccccchHHHHHHHhh---------hhhhhcccccccc
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT---------KLFTQAGDKGVKL  828 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~---------~l~e~~~~~g~~~  828 (1074)
                      ++|+|||||++||+||+.|++         +++|+.+..||..
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~   45 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKI   45 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceE
Confidence            459999999999999999985         6899998888865

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=87.55  E-value=3  Score=48.18  Aligned_cols=81  Identities=16%  Similarity=0.212  Sum_probs=59.2

Q ss_pred             hhHHhhcCCcEEEEecCCccCC-CCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcC
Q psy14927        922 GSVWGRLGAEVTAIEFMNAIGG-MGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCD 1000 (1074)
Q Consensus       922 A~~l~~~G~~Vtlv~~~~~~~~-~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D 1000 (1074)
                      -.+|.+.|.. +..++..++.+ ..-..++.+.++..+++.||++++++.|..|.+  ++..+.+.+    + ...+.+|
T Consensus        60 ~~fF~~~Gi~-~~~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~~--~~~~v~~~~----~-~~~~~a~  131 (376)
T TIGR03862        60 QDWARGLGIE-TFVGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQG--GTLRFETPD----G-QSTIEAD  131 (376)
T ss_pred             HHHHHHCCCc-eEECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEeC--CcEEEEECC----C-ceEEecC
Confidence            5567788865 33556667773 224478889999999999999999999999933  344554432    1 3469999


Q ss_pred             EEEEccCCcc
Q psy14927       1001 ALLVCVGRRP 1010 (1074)
Q Consensus      1001 ~vi~a~G~~p 1010 (1074)
                      .||+|+|-.+
T Consensus       132 ~vIlAtGG~s  141 (376)
T TIGR03862       132 AVVLALGGAS  141 (376)
T ss_pred             EEEEcCCCcc
Confidence            9999999865

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=87.54  E-value=4.8  Score=38.49  Aligned_cols=79  Identities=22%  Similarity=0.146  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHhhCh--------h---hhhhHhhccCCHHHHHHHHHh-----cC---ChHHHHHH
Q psy14927         51 VLLKWWAQYIESTEDMDLAMKYYEEARDY--------L---SMVRVLCFLQDFSRAAELANA-----SG---DTAAAYHL  111 (1074)
Q Consensus        51 ~l~~~~a~~~e~~~~~~~A~~~y~~a~d~--------~---~~vr~l~~~~~~~~a~~i~~~-----~~---~~~~~~~l  111 (1074)
                      .++=+.|-..-+.|+.++|+.+|.++-.-        .   .+...|..+|++++|..+.++     ++   +......+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            44556677888999999999999986442        1   123337789999999888763     12   33444556


Q ss_pred             HHHHHhcCChHHHHHHHH
Q psy14927        112 ARQYENSGQFDEAIHFYS  129 (1074)
Q Consensus       112 a~~~~~~g~~~~Ai~~y~  129 (1074)
                      |--+...|..++|++.+.
T Consensus        82 Al~L~~~gr~~eAl~~~l   99 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLL   99 (120)
T ss_pred             HHHHHHCCCHHHHHHHHH
Confidence            666667777777776544

>KOG1173|consensus

Probab=87.52  E-value=2.8  Score=49.35  Aligned_cols=123  Identities=23%  Similarity=0.356  Sum_probs=85.8

Q ss_pred             cCCHHHHHHHHHHcCccc--chhhhHhhh-------cHHHHHHHhhc-----CCChHHHHHHHHHHHhccCHHHHHHHHH
Q psy14927          9 NGDIDRAIRMFEKAETHQ--QHVPRMLLE-------NTDKLEKYIIQ-----SKDPVLLKWWAQYIESTEDMDLAMKYYE   74 (1074)
Q Consensus         9 ~g~~~eA~~~Ye~~~~~~--~~~~~~~~~-------~~~~~~~~~~~-----~~~~~l~~~~a~~~e~~~~~~~A~~~y~   74 (1074)
                      .|.-|.|+.-|-.+-+.-  -..|.+|++       +...++.|..+     +++|-+..-.|=.+-..+.|.+|.++|.
T Consensus       359 e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~  438 (611)
T KOG1173|consen  359 EGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQ  438 (611)
T ss_pred             cchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHH
Confidence            344555555555553321  122666653       45667777766     6788888888888888888888888888


Q ss_pred             HhhC---------------hhhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927         75 EARD---------------YLSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus        75 ~a~d---------------~~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                      .+-.               +.++-.++.+++..++|....+     .+++......+|-.|...|+++.||++|-+|
T Consensus       439 ~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKa  515 (611)
T KOG1173|consen  439 KALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKA  515 (611)
T ss_pred             HHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence            8761               2345556777888888877665     4677777778888888888888888888765

>KOG0543|consensus

Probab=87.39  E-value=1.8  Score=49.10  Aligned_cols=85  Identities=21%  Similarity=0.224  Sum_probs=68.9

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHhhCh-----------------------hhhhhHhhccCCHHHHHHHHH-----h
Q psy14927         50 PVLLKWWAQYIESTEDMDLAMKYYEEARDY-----------------------LSMVRVLCFLQDFSRAAELAN-----A  101 (1074)
Q Consensus        50 ~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~-----------------------~~~vr~l~~~~~~~~a~~i~~-----~  101 (1074)
                      ....+-.|..+-..|+|..|...|.+|-+|                       .++.-++..++.+.+|.+-|.     +
T Consensus       208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~  287 (397)
T KOG0543|consen  208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD  287 (397)
T ss_pred             HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence            345566688888899999999999886665                       344555667888999988876     4


Q ss_pred             cCChHHHHHHHHHHHhcCChHHHHHHHHHhCCh
Q psy14927        102 SGDTAAAYHLARQYENSGQFDEAIHFYSVAGSC  134 (1074)
Q Consensus       102 ~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~  134 (1074)
                      +++.-+.|+-|+.+...|+++.|+..|.++...
T Consensus       288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~  320 (397)
T KOG0543|consen  288 PNNVKALYRRGQALLALGEYDLARDDFQKALKL  320 (397)
T ss_pred             CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            788899999999999999999999999887554

>PRK13984 putative oxidoreductase; Provisional

Probab=87.32  E-value=0.83  Score=56.90  Aligned_cols=21  Identities=14%  Similarity=0.145  Sum_probs=18.9

Q ss_pred             hhhhhhccccchHHHHHHHhh
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT  815 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~  815 (1074)
                      ++|+|||||+.|+.+|..+++
T Consensus       419 k~VvVIGGG~~g~e~A~~l~r  439 (604)
T PRK13984        419 RSLVVIGGGNVAMDIARSMAR  439 (604)
T ss_pred             CcEEEECCchHHHHHHHHHHh
Confidence            349999999999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1074
3rnm_A	495	The Crystal Structure Of The Subunit Binding Of Hum		8e-95
1zy8_A	474	The Crystal Structure Of Dihydrolipoamide Dehydroge		1e-94
1zmc_A	474	Crystal Structure Of Human Dihydrolipoamide Dehydro		1e-94
1dxl_A	470	Dihydrolipoamide Dehydrogenase Of Glycine Decarboxy		3e-62
1jeh_A	478	Crystal Structure Of Yeast E3, Lipoamide Dehydrogen		6e-60
3urh_A	491	Crystal Structure Of A Dihydrolipoamide Dehydrogena		7e-60
2qae_A	468	Crystal Structure Analysis Of Trypanosoma Cruzi Lip		7e-52
3lad_A	476	Refined Crystal Structure Of Lipoamide Dehydrogenas		2e-46
1lpf_A	477	Three-Dimensional Structure Of Lipoamide Dehydrogen		5e-46
2eq7_A	455	Crystal Structure Of Lipoamide Dehydrogenase From T		2e-43
2eq6_A	464	Crystal Structure Of Lipoamide Dehydrogenase From T		8e-34
1ebd_A	455	Dihydrolipoamide Dehydrogenase Complexed With The B		3e-31
1bhy_A	482	Low Temperature Middle Resolution Structure Of P64k		2e-27
1ojt_A	482	Structure Of Dihydrolipoamide Dehydrogenase Length		3e-27
3ii4_A	466	Structure Of Mycobacterial Lipoamide Dehydrogenase		6e-21
2a8x_A	464	Crystal Structure Of Lipoamide Dehydrogenase From M		3e-20
1lvl_A	458	The Refined Structure Of Pseudomonas Putida Lipoami		1e-15
3ean_A	499	Crystal Structure Of Recombinant Rat Selenoprotein		5e-13
1h6v_A	499	Mammalian Thioredoxin Reductase Length = 499		5e-13
1onf_A	500	Crystal Structure Of Plasmodium Falciparum Glutathi		6e-12
2cfy_A	521	Crystal Structure Of Human Thioredoxin Reductase 1		1e-11
2zz0_A	513	Crystal Structure Of Human Thioredoxin Reductase I		1e-11
3qfa_A	519	Crystal Structure Of The Human Thioredoxin Reductas		2e-11
2j3n_A	519	X-Ray Structure Of Human Thioredoxin Reductase 1 Le		2e-11
2x50_A	510	Crystal Structure Of Trypanothione Reductase From L		4e-11
2jk6_A	511	Structure Of Trypanothione Reductase From Leishmani		5e-11
4b1b_A	542	Crystal Structure Of Plasmodium Falciparum Oxidised		1e-10
1ges_A	450	Anatomy Of An Engineered Nad-Binding Site Length =		3e-10
2v6o_A	596	Structure Of Schistosoma Mansoni Thioredoxin-Glutat		4e-10
2x8c_A	598	Thioredoxin Glutathione Reductase From Schistosoma		5e-10
3h4k_A	598	Crystal Structure Of The Wild Type Thioredoxin Glut		5e-10
1mo9_A	523	Nadph Dependent 2-Ketopropyl Coenzyme M Oxidoreduct		6e-10
3l8k_A	466	Crystal Structure Of A Dihydrolipoyl Dehydrogenase		7e-10
1ger_A	450	The Structure Of Glutathione Reductase From Escheri		2e-09
1fea_A	490	Unliganded Crithidia Fasciculata Trypanothione Redu		2e-09
2tpr_A	490	X-ray Structure Of Trypanothione Reductase From Cri		2e-09
1zk7_A	467	Crystal Structure Of Tn501 Mera Length = 467		2e-09
4dna_A	463	Crystal Structure Of Putative Glutathione Reductase		4e-09
2wba_A	492	Properties Of Trypanothione Reductase From T. Bruce		5e-09
2woi_A	495	Trypanothione Reductase From Trypanosoma Brucei Len		5e-09
1tyt_A	487	Crystal And Molecular Structure Of Crithidia Fascic		6e-09
1typ_A	487	Substrate Interactions Between Trypanothione Reduct		7e-09
2r9z_A	463	Glutathione Amide Reductase From Chromatium Gracile		4e-08
3dgz_A	488	Crystal Structure Of Mouse Mitochondrial Thioredoxi		7e-07
1zdl_A	517	Crystal Structure Of Mouse Thioredoxin Reductase Ty		8e-07
1xdi_A	499	Crystal Structure Of Lpda (Rv3303c) From Mycobacter		9e-07
3oc4_A	452	Crystal Structure Of A Pyridine Nucleotide-Disulfid		1e-06
3dgh_A	483	Crystal Structure Of Drosophila Thioredoxin Reducta		5e-06
3dh9_A	482	Crystal Structure Of Drosophila Thioredoxin Reducta		6e-06
2nvk_X	488	Crystal Structure Of Thioredoxin Reductase From Dro		6e-06
3cgc_A	480	Pyridine Nucleotide Complexes With Bacillus Anthrac		4e-05
2bc0_A	490	Structural Analysis Of Streptococcus Pyogenes Nadh		4e-05
2bc1_A	490	Structural Analysis Of Streptococcus Pyogenes Nadh		4e-05
3cgb_A	480	Pyridine Nucleotide Complexes With Bacillus Anthrac		5e-05
3cty_A	319	Crystal Structure Of T. Acidophilum Thioredoxin Red		7e-05
1nda_A	491	The Structure Of Trypanosoma Cruzi Trypanothione Re		8e-05
2hqm_A	479	Crystal Structure Of Glutathione Reductase Glr1 Fro		1e-04
4eqx_A	437	Crystal Structure Of The C43s Mutant Of Staphylococ		1e-04
1yqz_A	438	Structure Of Coenzyme A-Disulfide Reductase From St		1e-04
4em3_A	437	Crystal Structure Of Staphylococcus Aureus Bound Wi		1e-04
4emw_A	436	Crystal Structure Of Staphylococcus Aureus Bound Wi		1e-04
4eqs_A	437	Crystal Structure Of The Y419f Mutant Of Staphyloco		2e-04
4eqr_A	437	Crystal Structure Of The Y361f Mutant Of Staphyloco		2e-04
3o0h_A	484	Crystal Structure Of Glutathione Reductase From Bar		2e-04
4eqw_A	437	Crystal Structure Of The Y361f, Y419f Mutant Of Sta		2e-04
2aaq_A	479	Crystal Structure Analysis Of The Human Glutahione		3e-04
3djg_X	477	Catalytic Cycle Of Human Glutathione Reductase Near		3e-04
1bwc_A	478	Structure Of Human Glutathione Reductase Complexed		3e-04
1gxf_A	492	Crystal Structure Of Trypanosoma Cruzi Trypanothion		3e-04
1grg_A	478	Substrate Binding And Catalysis By Glutathione Redu		3e-04
1gsn_A	478	Human Glutathione Reductase Modified By Dinitrosogl		3e-04
1dnc_A	478	Human Glutathione Reductase Modified By Diglutathio		3e-04
1xan_A	461	Human Glutathione Reductase In Complex With A Xanth		3e-04
1bzl_A	486	Crystal Structure Of Trypanosoma Cruzi Trypanothion		4e-04
1grt_A	478	Human Glutathione Reductase A34eR37W MUTANT Length		4e-04
3iwa_A	472	Crystal Structure Of A Fad-Dependent Pyridine Nucle		4e-04
1aog_A	485	Trypanosoma Cruzi Trypanothione Reductase (Oxidized		4e-04
2grt_A	461	Human Glutathione Reductase A34e, R37w Mutant, Oxid		4e-04
1k4q_A	463	Human Glutathione Reductase Inactivated By Peroxyni		5e-04
3ntd_A	565	Structure Of The Shewanella Loihica Pv-4 Nadh-Depen		8e-04

>pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human Dihydrolipoamide Transacylase (E2b) Bound To Human Dihydrolipoamide Dehydrogenase (E3) Length = 495

Iteration: 1
 Score =  345 bits (885), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 180/283 (63%), Positives = 213/283 (75%), Gaps = 22/283 (7%)
Query: 811  YHLA-TKLFTQAGDK--GVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKIT 867
            YH+A  K F   G +   V+LNL+ MM  KS AVKALTGGIAHLFK NKV  +NG+GKIT
Sbjct: 84   YHMAHGKDFASRGIEMSEVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKIT 143
Query: 868  GPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK------ 921
            G N VT  K+DG T+ + TKNILIATGSEVTPFPGI +DE+TIVSSTGALSLKK      
Sbjct: 144  GKNQVTATKADGGTQVIDTKNILIATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKMV 203
Query: 922  -----------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTK 970
                       GSVW RLGA+VTA+EF+  +GG+GID E++K FQRIL KQG +FKL TK
Sbjct: 204  VIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTK 263
Query: 971  VTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGR 1029
            VTGA+K  D  I V+IE      K E ++CD LLVC+GRRP+T NLGLEE+GIE D +GR
Sbjct: 264  VTGATKKSDGKIDVSIEAASG-GKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGR 322
Query: 1030 VPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072
            +PVN+RFQT IPNI+AIGD + GPMLAHKAEDEGI+CVEG+AG
Sbjct: 323  IPVNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAG 365

>pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase And Dihydrolipoamide Dehydrogenase-Binding Protein (Didomain) Subcomplex Of Human Pyruvate Dehydrogenase Complex. Length = 474

Iteration: 1
 Score =  345 bits (884), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 180/283 (63%), Positives = 213/283 (75%), Gaps = 22/283 (7%)
Query: 811  YHLA-TKLFTQAGDK--GVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKIT 867
            YH+A  K F   G +   V+LNL+ MM  KS AVKALTGGIAHLFK NKV  +NG+GKIT
Sbjct: 63   YHMAHGKDFASRGIEMSEVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKIT 122
Query: 868  GPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK------ 921
            G N VT  K+DG T+ + TKNILIATGSEVTPFPGI +DE+TIVSSTGALSLKK      
Sbjct: 123  GKNQVTATKADGGTQVIDTKNILIATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKMV 182
Query: 922  -----------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTK 970
                       GSVW RLGA+VTA+EF+  +GG+GID E++K FQRIL KQG +FKL TK
Sbjct: 183  VIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTK 242
Query: 971  VTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGR 1029
            VTGA+K  D  I V+IE      K E ++CD LLVC+GRRP+T NLGLEE+GIE D +GR
Sbjct: 243  VTGATKKSDGKIDVSIEAASG-GKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGR 301
Query: 1030 VPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072
            +PVN+RFQT IPNI+AIGD + GPMLAHKAEDEGI+CVEG+AG
Sbjct: 302  IPVNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAG 344

>pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase Complexed To Nad+ Length = 474

Iteration: 1
 Score =  345 bits (884), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 174/265 (65%), Positives = 205/265 (77%), Gaps = 19/265 (7%)
Query: 826  VKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVK 885
            V+LNL+ MM  KS AVKALTGGIAHLFK NKV  +NG+GKITG N VT  K+DG T+ + 
Sbjct: 81   VRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVID 140
Query: 886  TKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK-----------------GSVWGRL 928
            TKNILIATGSEVTPFPGI +DE+TIVSSTGALSLKK                 GSVW RL
Sbjct: 141  TKNILIATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRL 200
Query: 929  GAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIEN 987
            GA+VTA+EF+  +GG+GID E++K FQRIL KQG +FKL TKVTGA+K  D  I V+IE 
Sbjct: 201  GADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEA 260
Query: 988  VKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIG 1047
                 K E ++CD LLVC+GRRP+T NLGLEE+GIE D +GR+PVN+RFQT IPNI+AIG
Sbjct: 261  ASG-GKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIG 319
Query: 1048 DCIHGPMLAHKAEDEGIVCVEGIAG 1072
            D + GPMLAHKAEDEGI+CVEG+AG
Sbjct: 320  DVVAGPMLAHKAEDEGIICVEGMAG 344

>pdb|1DXL|A Chain A, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase From Pisum Sativum Length = 470

Iteration: 1
 Score =  237 bits (604), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 133/284 (46%), Positives = 176/284 (61%), Gaps = 27/284 (9%)
Query: 811  YHLATKLFTQAGDK--GVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITG 868
            YH A   F   G K   V+++L  MMG K  AV  LT GI  LFK NKVT + G+GK   
Sbjct: 63   YHEAKHSFANHGVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVS 122
Query: 869  PNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK------- 921
            P+ ++V   +G    VK K+I+IATGS+V   PG+ +DE+ IVSSTGAL+L +       
Sbjct: 123  PSEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVTIDEKKIVSSTGALALSEIPKKLVV 182
Query: 922  ----------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKV 971
                      GSVWGR+G+EVT +EF + I    +D E+ KQFQR L KQGM+FKL TKV
Sbjct: 183  IGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT-MDAEIRKQFQRSLEKQGMKFKLKTKV 241
Query: 972  TGASKSGDNITVTIENVKDPTKKEE---LSCDALLVCVGRRPYTHNLGLEEIGIEKDEKG 1028
             G   SGD + +T+E    P+   E   +  D +LV  GR P+T  L L++IG+E D+ G
Sbjct: 242  VGVDTSGDGVKLTVE----PSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLG 297
Query: 1029 RVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072
            R+ VN RF T +  ++AIGD I GPMLAHKAE++G+ CVE +AG
Sbjct: 298  RILVNERFSTNVSGVYAIGDVIPGPMLAHKAEEDGVACVEYLAG 341

>pdb|1JEH|A Chain A, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase Length = 478

Iteration: 1
 Score =  229 bits (584), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 135/294 (45%), Positives = 176/294 (59%), Gaps = 33/294 (11%)
Query: 806  AVQANYHLATKLFTQAGDKGV------KLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQ 859
            A+  N HL  ++ T+A  +G+      K+N+      K  AVK LTGGI  LFK NKVT 
Sbjct: 54   ALLNNSHLFHQMHTEAQKRGIDVNGDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTY 113
Query: 860  LNGHGKITGPNTVTVIKSDGSTEEVK------TKNILIATGSEVTPFPGIEVDEETIVSS 913
              G+G       + V   DG    VK       KNI++ATGSEVTPFPGIE+DEE IVSS
Sbjct: 114  YKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFPGIEIDEEKIVSS 173
Query: 914  TGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQR 956
            TGALSLK+                 GSV+ RLG++VT +EF   IG   +DGEVAK  Q+
Sbjct: 174  TGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA-SMDGEVAKATQK 232
Query: 957  ILGKQGMQFKLGTKVTGASKSGDN--ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHN 1014
             L KQG+ FKL TKV  A ++ D   + + +E+ K   K+E L  + LLV VGRRPY   
Sbjct: 233  FLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKT-NKQENLEAEVLLVAVGRRPYIAG 291
Query: 1015 LGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVE 1068
            LG E+IG+E D++GR+ ++ +F +  P+I  +GD   GPMLAHKAE+EGI  VE
Sbjct: 292  LGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGPMLAHKAEEEGIAAVE 345

>pdb|3URH|A Chain A, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 491

Iteration: 1
 Score =  229 bits (584), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 129/265 (48%), Positives = 165/265 (62%), Gaps = 21/265 (7%)
Query: 827  KLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKT 886
            KLNL+     K A VK+   G++ LFK NK+    G GK+ G   V+V    G  + ++ 
Sbjct: 100  KLNLQKXXAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKVLGQGKVSVTNEKGEEQVLEA 159
Query: 887  KNILIATGSEVTPFPGIEV--DEETIVSSTGALSLKK-----------------GSVWGR 927
            KN++IATGS+V   PG+EV  DE+TIVSSTGAL+L+K                 GSVW R
Sbjct: 160  KNVVIATGSDVAGIPGVEVAFDEKTIVSSTGALALEKVPASXIVVGGGVIGLELGSVWAR 219
Query: 928  LGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIEN 987
            LGA+VT +EF++ I G G DGEVAKQ QR L KQG+ FKLG KVTGA KSGD   VT E 
Sbjct: 220  LGAKVTVVEFLDTILG-GXDGEVAKQLQRXLTKQGIDFKLGAKVTGAVKSGDGAKVTFEP 278
Query: 988  VKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIG 1047
            VK   +   L  + +L+  GR+P T  LGL + G+  D +GRV ++  FQT I  ++AIG
Sbjct: 279  VKG-GEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIG 337
Query: 1048 DCIHGPMLAHKAEDEGIVCVEGIAG 1072
            D + GP LAHKAEDEG+   E IAG
Sbjct: 338  DVVRGPXLAHKAEDEGVAVAEIIAG 362

>pdb|2QAE|A Chain A, Crystal Structure Analysis Of Trypanosoma Cruzi Lipoamide Dehydrogenase Length = 468

Iteration: 1
 Score =  202 bits (515), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 119/284 (41%), Positives = 167/284 (58%), Gaps = 25/284 (8%)
Query: 811  YHLATKLFTQ---AGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKIT 867
            YH A   F +    G +GV ++   M   K  AVK LTGG+ +LFK NKVT   G G   
Sbjct: 59   YHDAHANFARYGLMGGEGVTMDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSFE 118
Query: 868  GPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK------ 921
              +++ V   DG  E ++TK  +IATGSE T  P +  DE+ ++SSTGAL+L +      
Sbjct: 119  TAHSIRVNGLDGKQEMLETKKTIIATGSEPTELPFLPFDEKVVLSSTGALALPRVPKTMV 178
Query: 922  -----------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGK-QGMQFKLGT 969
                       GSVW RLGAEVT +EF        +D +V       L K + M+F   T
Sbjct: 179  VIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPT-LDEDVTNALVGALAKNEKMKFMTST 237
Query: 970  KVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGR 1029
            KV G + +GD++++ +E      K+E ++C+ALLV VGRRP+T  LGL++I + K+E+G 
Sbjct: 238  KVVGGTNNGDSVSLEVEGKNG--KRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGF 295
Query: 1030 VPVNSRFQTVIPNIFAIGDCI-HGPMLAHKAEDEGIVCVEGIAG 1072
            V +   F+T IP+++AIGD +  GPMLAHKAEDEG+ C E +AG
Sbjct: 296  VKIGDHFETSIPDVYAIGDVVDKGPMLAHKAEDEGVACAEILAG 339

>pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase From Azotobacter Vinelandii At 2.2 Angstroms Resolution. A Comparison With The Structure Of Glutathione Reductase Length = 476

Iteration: 1
 Score =  184 bits (467), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 107/266 (40%), Positives = 154/266 (57%), Gaps = 21/266 (7%)
Query: 826  VKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVK 885
            V +++ TM+  K   V+ LTGG+A L K+N VT   GHGK+     V V  +DGS++ + 
Sbjct: 83   VAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLD 142
Query: 886  TKNILIATGSEVTPFPGIEVDEETIVSSTGAL-----------------SLKKGSVWGRL 928
            T+N+++A+GS+    P   VD++ IV STGAL                  L+ GSVW RL
Sbjct: 143  TENVILASGSKPVEIPPAPVDQDVIVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWARL 202
Query: 929  GAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENV 988
            GAEVT +E M+      +D +VAK+ Q+IL KQG++  LG +VTG       +TV     
Sbjct: 203  GAEVTVLEAMDKF-LPAVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTV---KF 258
Query: 989  KDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGD 1048
             D   ++  + D L+V VGRRP T +L   + G+  DE+G + V+    T +P ++AIGD
Sbjct: 259  VDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGD 318
Query: 1049 CIHGPMLAHKAEDEGIVCVEGIAGDK 1074
             + G MLAHKA +EG+V  E IAG K
Sbjct: 319  VVRGAMLAHKASEEGVVVAERIAGHK 344

>pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase From Pseudomonas Fluorescens At 2.8 Angstroms Resolution. Analysis Of Redox And Thermostability Properties Length = 477

Iteration: 1
 Score =  183 bits (464), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 112/287 (39%), Positives = 161/287 (56%), Gaps = 31/287 (10%)
Query: 811  YHLATKLFTQAG--DKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITG 868
            YH A + F   G   KGV +++  M+  K+  VK LTGGIA LFK+N VT   GHGK+  
Sbjct: 66   YHEAKEAFKVHGIEAKGVTIDVPAMVARKANIVKNLTGGIATLFKANGVTSFEGHGKLLA 125
Query: 869  PNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGAL----------- 917
               V V   DG T+ ++ +N++IA+GS     P   + ++ IV STGAL           
Sbjct: 126  NKQVEVTGLDGKTQVLEAENVIIASGSRPVEIPPAPLSDDIIVDSTGALEFQAVPKKLGV 185
Query: 918  ------SLKKGSVWGRLGAEVTAIE----FMNAIGGMGIDGEVAKQFQRILGKQGMQFKL 967
                   L+ GSVW RLGAEVT +E    F+ A      D ++AK+  ++L KQG+  +L
Sbjct: 186  IGAGVIGLELGSVWARLGAEVTVLEALDKFLPA-----ADEQIAKEALKVLTKQGLNIRL 240
Query: 968  GTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEK 1027
            G +VT +      +TVT     D   +++ + D L+V VGRRP T +L   + G+  DE+
Sbjct: 241  GARVTASEVKKKQVTVTF---TDANGEQKETFDKLIVAVGRRPVTTDLLAADSGVTLDER 297
Query: 1028 GRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
            G + V+   +T +P +FAIGD + G MLAHKA +EG++  E IAG K
Sbjct: 298  GFIYVDDHCKTSVPGVFAIGDVVRGAMLAHKASEEGVMVAERIAGHK 344

>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus Thermophilus Hb8 With Psbdo Length = 455

Iteration: 1
 Score =  174 bits (441), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 107/272 (39%), Positives = 147/272 (54%), Gaps = 27/272 (9%)
Query: 814  ATKLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVT 873
            A K    A  KGV+L+L  +M  K   V+A T G+  LFK N + +  G  +      V 
Sbjct: 61   AKKGLLGAKVKGVELDLPALMAHKDKVVQANTQGVEFLFKKNGIARHQGTARFLSERKVL 120
Query: 874  VIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALS--------------- 918
            V   + + EE++ + ILIATGS     P  +VD E +V+ST ALS               
Sbjct: 121  V---EETGEELEARYILIATGSAPLIPPWAQVDYERVVTSTEALSFPEVPKRLIVVGGGV 177
Query: 919  --LKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASK 976
              L+ G VW RLGAEV  +E+M+ I    +D EV++  +R+  KQG+  + G +VT    
Sbjct: 178  IGLELGVVWHRLGAEVIVLEYMDRILPT-MDLEVSRAAERVFKKQGLTIRTGVRVTAVVP 236
Query: 977  SGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRF 1036
                  V +E        E L  D +LV VGRRPYT  L LE  G+  DE+GR+PV+   
Sbjct: 237  EAKGARVELEG------GEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHL 290
Query: 1037 QTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVE 1068
            +T +P+I+AIGD + GPMLAHKA +EGI  VE
Sbjct: 291  RTRVPHIYAIGDVVRGPMLAHKASEEGIAAVE 322

>pdb|2EQ6|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus Thermophilus Hb8 Length = 464

Iteration: 1
 Score =  142 bits (359), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 110/307 (35%), Positives = 156/307 (50%), Gaps = 32/307 (10%)
Query: 789  ESDDQRQVVLNTLGNCAAVQANYHLATKL--FTQAGDKGVK----LNLETMMGTKSAAVK 842
            E+ +   V LN    C   +A  H A  L     A   G+K    L+L+ + G +   VK
Sbjct: 36   EAGEVGGVCLNV--GCIPTKALLHAAETLHHLKVAEGFGLKAKPELDLKKLGGWRDQVVK 93
Query: 843  ALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPG 902
             LTGG+  L K N V  L G  ++ GP  V V       E    K++++ATGSE     G
Sbjct: 94   KLTGGVGTLLKGNGVELLRGFARLVGPKEVEV-----GGERYGAKSLILATGSEPLELKG 148
Query: 903  IEVDEET-----------------IVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGMG 945
                E+                  +V   GA+ L+ G V+ RLGAEVT IE+M  I   G
Sbjct: 149  FPFGEDVWDSTRALKVEEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQG 208
Query: 946  IDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVC 1005
             D E A   +R L K+G++ +  TK  G  K  D + V +E  +   + EE+  D +LV 
Sbjct: 209  -DPETAALLRRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEG-GEGEEVVVDKVLVA 266
Query: 1006 VGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIV 1065
            VGR+P T  LGLE+ G++ DE+G + VN+R +T +P ++AIGD    P+LAHKA  EG++
Sbjct: 267  VGRKPRTEGLGLEKAGVKVDERGFIRVNARMETSVPGVYAIGDAARPPLLAHKAMREGLI 326
Query: 1066 CVEGIAG 1072
              E  AG
Sbjct: 327  AAENAAG 333

>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding Domain Of The Dihydrolipoamide Acetylase Length = 455

Iteration: 1
 Score =  134 bits (337), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 95/253 (37%), Positives = 131/253 (51%), Gaps = 23/253 (9%)
Query: 837  KSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSE 896
            K++ VK LTGG+  L K NKV  + G       NTV V+  D S +    KN +IATGS 
Sbjct: 86   KASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGD-SAQTYTFKNAIIATGSR 144
Query: 897  VTPFPGIEVDEETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMN 939
                P  +     I+ STGAL+L +                 G+ +   G +VT +E   
Sbjct: 145  PIELPNFKFSNR-ILDSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAG 203
Query: 940  AIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSC 999
             I   G + ++A   ++ L K+G++        GA +  D +TVT E     TK   +  
Sbjct: 204  EILS-GFEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYE-ANGETKT--IDA 259
Query: 1000 DALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKA 1059
            D +LV VGRRP T  LGLE+IGI+   +G + V+ + +T +PNIFAIGD + GP LAHKA
Sbjct: 260  DYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVPGPALAHKA 319
Query: 1060 EDEGIVCVEGIAG 1072
              EG V  E IAG
Sbjct: 320  SYEGKVAAEAIAG 332

>pdb|1BHY|A Chain A, Low Temperature Middle Resolution Structure Of P64k From Masc Data Length = 482

Iteration: 1
 Score =  121 bits (304), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 142/306 (46%), Gaps = 44/306 (14%)
Query: 801  LGNCAAVQANYHLATKLFTQAGDKGVK-----LNLETMMGTKSAAVKALTGGIAHLFKSN 855
            L N A +    HLA          G+K     L+++ +   K   V  LTGG+A + KS 
Sbjct: 57   LHNAAVIDEVRHLAAN--------GIKYPEPELDIDMLRAYKDGVVSRLTGGLAGMAKSR 108
Query: 856  KVTQLNGHGKITGPNTVTVIKSDGSTEE----------VKTKNILIATGSEVTPFPGIEV 905
            KV  + G G+   P+ + V  + G   E          V  KN +IA GS VT  P I  
Sbjct: 109  KVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTKLPFIPE 168
Query: 906  DEETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDG 948
            D   I+ S+GAL+LK+                 G+V+  LG+ +  +E M+ +   G D 
Sbjct: 169  DPR-IIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLM-QGADR 226
Query: 949  EVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGR 1008
            ++ K +Q+    +     + TK        D + VT E    P  KE    DA+LV  GR
Sbjct: 227  DLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAP--KEPQRYDAVLVAAGR 284
Query: 1009 RPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVE 1068
             P    +  E+ G+   ++G + V+ + +T +P+I+AIGD +  PMLAHKA  EG V  E
Sbjct: 285  APNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPMLAHKAVHEGHVAAE 344
Query: 1069 GIAGDK 1074
              AG K
Sbjct: 345  NCAGHK 350

>pdb|1OJT|A Chain A, Structure Of Dihydrolipoamide Dehydrogenase Length = 482

Iteration: 1
 Score =  121 bits (303), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 142/306 (46%), Gaps = 44/306 (14%)
Query: 801  LGNCAAVQANYHLATKLFTQAGDKGVK-----LNLETMMGTKSAAVKALTGGIAHLFKSN 855
            L N A +    HLA          G+K     L+++ +   K   V  LTGG+A + KS 
Sbjct: 57   LHNAAVIDEVRHLAAN--------GIKYPEPELDIDMLRAYKDGVVSRLTGGLAGMAKSR 108
Query: 856  KVTQLNGHGKITGPNTVTVIKSDGSTEE----------VKTKNILIATGSEVTPFPGIEV 905
            KV  + G G+   P+ + V  + G   E          V  KN +IA GS VT  P I  
Sbjct: 109  KVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTKLPFIPE 168
Query: 906  DEETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDG 948
            D   I+ S+GAL+LK+                 G+V+  LG+ +  +E M+ +   G D 
Sbjct: 169  DPR-IIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLM-QGADR 226
Query: 949  EVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGR 1008
            ++ K +Q+    +     + TK        D + VT E    P  KE    DA+LV  GR
Sbjct: 227  DLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAP--KEPQRYDAVLVAAGR 284
Query: 1009 RPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVE 1068
             P    +  E+ G+   ++G + V+ + +T +P+I+AIGD +  PMLAHKA  EG V  E
Sbjct: 285  APNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPMLAHKAVHEGHVAAE 344
Query: 1069 GIAGDK 1074
              AG K
Sbjct: 345  NCAGHK 350

>pdb|3II4|A Chain A, Structure Of Mycobacterial Lipoamide Dehydrogenase Bound To A Triazaspirodimethoxybenzoyl Inhibitor Length = 466

Iteration: 1
 Score =  100 bits (248), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 122/243 (50%), Gaps = 22/243 (9%)
Query: 847  GIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVD 906
            G+  L K NK+T+++G+G     NT+ V  +DG TE V   N +IATGS     PG  + 
Sbjct: 98   GVHFLMKKNKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGSSTRLVPGTSLS 157
Query: 907  ------EETIVS----------STGALSLKKGSVWGRLGAEVTAIEFM-NAIGGMGIDGE 949
                  EE I+S            GA+ ++ G V    G +VT +EF+  A+     D +
Sbjct: 158  ANVVTYEEQILSRELPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPNE--DAD 215
Query: 950  VAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009
            V+K+ ++   K G+     TKV   +  G  +TVT+   KD    +EL  + +L  +G  
Sbjct: 216  VSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTV--TKDGV-AQELKAEKVLQAIGFA 272
Query: 1010 PYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEG 1069
            P     GL++ G+   ++  + V+   +T + +I+AIGD      LAH AE +G+V  E 
Sbjct: 273  PNVEGYGLDKAGVALTDRKAIGVDDYMRTNVGHIYAIGDVNGLLQLAHVAEAQGVVAAET 332
Query: 1070 IAG 1072
            IAG
Sbjct: 333  IAG 335

>pdb|2A8X|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Mycobacterium Tuberculosis Length = 464

Iteration: 1
 Score = 97.8 bits (242), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 117/243 (48%), Gaps = 22/243 (9%)
Query: 847  GIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVD 906
            G+  L K NK+T+++G+G     NT+ V  +DG TE V   N +IATGS     PG  + 
Sbjct: 96   GVHFLXKKNKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGSSTRLVPGTSLS 155
Query: 907  EETIVSSTGALS--LKK--------------GSVWGRLGAEVTAIEFM-NAIGGMGIDGE 949
               +      LS  L K              G V    G +VT +EF+  A+     D +
Sbjct: 156  ANVVTYEEQILSRELPKSIIIAGAGAIGXEFGYVLKNYGVDVTIVEFLPRALPNE--DAD 213
Query: 950  VAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009
            V+K+ ++   K G+     TKV   +  G  +TVT+   KD    +EL  + +L  +G  
Sbjct: 214  VSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTV--TKDGV-AQELKAEKVLQAIGFA 270
Query: 1010 PYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEG 1069
            P     GL++ G+   ++  + V+   +T + +I+AIGD      LAH AE +G+V  E 
Sbjct: 271  PNVEGYGLDKAGVALTDRKAIGVDDYXRTNVGHIYAIGDVNGLLQLAHVAEAQGVVAAET 330
Query: 1070 IAG 1072
            IAG
Sbjct: 331  IAG 333

>pdb|1LVL|A Chain A, The Refined Structure Of Pseudomonas Putida Lipoamide Dehydrogenase Complexed With Nad+ At 2.45 Angstroms Resolution Length = 458

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 131/287 (45%), Gaps = 35/287 (12%)
Query: 807  VQANYHLATKLFTQAGDKGV-----KLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLN 861
            V   +H A++ FT+    G+     +L++   +  K   V  LT G+A L K + V  ++
Sbjct: 57   VAEQFHQASR-FTEPSPLGISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVH 115
Query: 862  GHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEV---------------- 905
            G  K+     V V   DG  + ++ +++L+ATGS     P + +                
Sbjct: 116  GWAKVLDGKQVEV---DG--QRIQCEHLLLATGSSSVELPMLPLGGPVISSTEALAPKAL 170
Query: 906  DEETIVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQF 965
             +  +V   G + L+ G  + +LGA+V+ +E    I     D E+       L K G+  
Sbjct: 171  PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT-YDSELTAPVAESLKKLGIAL 229
Query: 966  KLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKD 1025
             LG  V G     +N  +   + K    +  L  D +LV VGRRP T    LE + + K 
Sbjct: 230  HLGHSVEGY----ENGCLLANDGKG--GQLRLEADRVLVAVGRRPRTKGFNLECLDL-KM 282
Query: 1026 EKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072
                + ++ R QT + N++AIGD    PMLAH+A  +G +  E IAG
Sbjct: 283  NGAAIAIDERCQTSMHNVWAIGDVAGEPMLAHRAMAQGEMVAEIIAG 329

>pdb|3EAN|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein Thioredoxin Reductase 1 With Reduced C-Terminal Tail Length = 499

Iteration: 1
 Score = 73.9 bits (180), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 112/250 (44%), Gaps = 24/250 (9%)
Query: 826  VKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVK 885
            VK + E M  +    + +L  G     +  KV   N +GK  GP+ +    + G  +   
Sbjct: 94   VKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYGKFIGPHKIMATNNKGKEKVYS 153
Query: 886  TKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKKGSVWGR---LGAEVTAIEFMNAIG 942
             +  LIATG E   + GI  D+E  +SS    SL      G+   +GA   A+E    + 
Sbjct: 154  AERFLIATG-ERPRYLGIPGDKEYCISSDDLFSLPYCP--GKTLVVGASYVALECAGFLA 210
Query: 943  GMGIDGEVAKQFQRILG-KQGMQFKLGTKVT--GASKSGDNITVTIENVK---------- 989
            G+G+D  V  +   + G  Q M  K+G  +   G       +   IE ++          
Sbjct: 211  GIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVT 270
Query: 990  -DPTKKEELSCD---ALLVCVGRRPYTHNLGLEEIGIEKDEK-GRVPVNSRFQTVIPNIF 1044
               T  EE   D    +L+ VGR   T  +GLE +G++ +EK G++PV    QT +P I+
Sbjct: 271  AKSTNSEETIEDEFNTVLLAVGRDSCTRTIGLETVGVKINEKTGKIPVTDEEQTNVPYIY 330
Query: 1045 AIGDCIHGPM 1054
            AIGD + G +
Sbjct: 331  AIGDILEGKL 340

>pdb|1H6V|A Chain A, Mammalian Thioredoxin Reductase Length = 499

Iteration: 1
 Score = 73.6 bits (179), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 112/250 (44%), Gaps = 24/250 (9%)
Query: 826  VKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVK 885
            VK + E M  +    + +L  G     +  KV   N +GK  GP+ +    + G  +   
Sbjct: 94   VKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYGKFIGPHKIMATNNKGKEKVYS 153
Query: 886  TKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKKGSVWGR---LGAEVTAIEFMNAIG 942
             +  LIATG E   + GI  D+E  +SS    SL      G+   +GA   A+E    + 
Sbjct: 154  AERFLIATG-ERPRYLGIPGDKEYCISSDDLFSLPYCP--GKTLVVGASYVALECAGFLA 210
Query: 943  GMGIDGEVAKQFQRILG-KQGMQFKLGTKVT--GASKSGDNITVTIENVK---------- 989
            G+G+D  V  +   + G  Q M  K+G  +   G       +   IE ++          
Sbjct: 211  GIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVT 270
Query: 990  -DPTKKEELSCD---ALLVCVGRRPYTHNLGLEEIGIEKDEK-GRVPVNSRFQTVIPNIF 1044
               T  EE   D    +L+ VGR   T  +GLE +G++ +EK G++PV    QT +P I+
Sbjct: 271  AKSTNSEETIEDEFNTVLLAVGRDSCTRTIGLETVGVKINEKTGKIPVTDEEQTNVPYIY 330
Query: 1045 AIGDCIHGPM 1054
            AIGD + G +
Sbjct: 331  AIGDILEGKL 340

>pdb|1ONF|A Chain A, Crystal Structure Of Plasmodium Falciparum Glutathione Reductase Length = 500

Iteration: 1
 Score = 70.1 bits (170), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 108/248 (43%), Gaps = 25/248 (10%)
Query: 823  DKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVI------- 875
            D     NL  ++  +   ++ L          +KV    G       N + +        
Sbjct: 70   DTKFSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNN 129
Query: 876  KSDGSTEE--VKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKKGSVWGRLGAEVT 933
            K +G   E  ++ +NILIA G++   FP ++  E TI SS    ++K+    G +G+   
Sbjct: 130  KDNGPLNEEILEGRNILIAVGNKPV-FPPVKGIENTI-SSDEFFNIKESKKIGIVGSGYI 187
Query: 934  AIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNI-----TVTIENV 988
            A+E +N I  +GID  +  +  RIL K      +        K+  NI      V I+ V
Sbjct: 188  AVELINVIKRLGIDSYIFARGNRILRKFDESV-INVLENDMKKNNINIVTFADVVEIKKV 246
Query: 989  KDPTKKEELS-------CDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIP 1041
             D      LS        D ++ CVGR P T NL LE++ +E +    + V+   +T + 
Sbjct: 247  SDKNLSIHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVETN-NNYIVVDENQRTSVN 305
Query: 1042 NIFAIGDC 1049
            NI+A+GDC
Sbjct: 306  NIYAVGDC 313

>pdb|2CFY|A Chain A, Crystal Structure Of Human Thioredoxin Reductase 1 Length = 521

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 112/246 (45%), Gaps = 24/246 (9%)
Query: 826  VKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVK 885
            VK + + M+      + +L  G     +  KV   N +G+  GP+ +    + G  +   
Sbjct: 116  VKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYS 175
Query: 886  TKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKKGSVWGR---LGAEVTAIEFMNAIG 942
             +  LIATG E   + GI  D+E  +SS    SL      G+   +GA   A+E    + 
Sbjct: 176  AERFLIATG-ERPRYLGIPGDKEYCISSDDLFSLPYCP--GKTLVVGASYVALECAGFLA 232
Query: 943  GMGIDGEVAKQFQRILG-KQGMQFKLGTKVT--GASKSGDNITVTIENVK---------- 989
            G+G+D  V  +   + G  Q M  K+G  +   G       + + +E ++          
Sbjct: 233  GIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVV 292
Query: 990  -DPTKKEEL---SCDALLVCVGRRPYTHNLGLEEIGIEKDEK-GRVPVNSRFQTVIPNIF 1044
               T  EE+     + +++ +GR   T  +GLE +G++ +EK G++PV    QT +P I+
Sbjct: 293  AQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIY 352
Query: 1045 AIGDCI 1050
            AIGD +
Sbjct: 353  AIGDIL 358

>pdb|2ZZ0|A Chain A, Crystal Structure Of Human Thioredoxin Reductase I (Secys 498 Cys) Length = 513

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 112/246 (45%), Gaps = 24/246 (9%)
Query: 826  VKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVK 885
            VK + + M+      + +L  G     +  KV   N +G+  GP+ +    + G  +   
Sbjct: 108  VKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYS 167
Query: 886  TKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKKGSVWGR---LGAEVTAIEFMNAIG 942
             +  LIATG E   + GI  D+E  +SS    SL      G+   +GA   A+E    + 
Sbjct: 168  AERFLIATG-ERPRYLGIPGDKEYCISSDDLFSLPYCP--GKTLVVGASYVALECAGFLA 224
Query: 943  GMGIDGEVAKQFQRILG-KQGMQFKLGTKVT--GASKSGDNITVTIENVK---------- 989
            G+G+D  V  +   + G  Q M  K+G  +   G       + + +E ++          
Sbjct: 225  GIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVV 284
Query: 990  -DPTKKEEL---SCDALLVCVGRRPYTHNLGLEEIGIEKDEK-GRVPVNSRFQTVIPNIF 1044
               T  EE+     + +++ +GR   T  +GLE +G++ +EK G++PV    QT +P I+
Sbjct: 285  AQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIY 344
Query: 1045 AIGDCI 1050
            AIGD +
Sbjct: 345  AIGDIL 350

>pdb|3QFA|A Chain A, Crystal Structure Of The Human Thioredoxin Reductase-Thioredoxin Complex Length = 519

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 112/246 (45%), Gaps = 24/246 (9%)
Query: 826  VKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVK 885
            VK + + M+      + +L  G     +  KV   N +G+  GP+ +    + G  +   
Sbjct: 114  VKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYS 173
Query: 886  TKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKKGSVWGR---LGAEVTAIEFMNAIG 942
             +  LIATG E   + GI  D+E  +SS    SL      G+   +GA   A+E    + 
Sbjct: 174  AERFLIATG-ERPRYLGIPGDKEYCISSDDLFSLPYCP--GKTLVVGASYVALECAGFLA 230
Query: 943  GMGIDGEVAKQFQRILG-KQGMQFKLGTKVT--GASKSGDNITVTIENVK---------- 989
            G+G+D  V  +   + G  Q M  K+G  +   G       + + +E ++          
Sbjct: 231  GIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVV 290
Query: 990  -DPTKKEEL---SCDALLVCVGRRPYTHNLGLEEIGIEKDEK-GRVPVNSRFQTVIPNIF 1044
               T  EE+     + +++ +GR   T  +GLE +G++ +EK G++PV    QT +P I+
Sbjct: 291  AQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIY 350
Query: 1045 AIGDCI 1050
            AIGD +
Sbjct: 351  AIGDIL 356

>pdb|2J3N|A Chain A, X-Ray Structure Of Human Thioredoxin Reductase 1 Length = 519

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 112/246 (45%), Gaps = 24/246 (9%)
Query: 826  VKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVK 885
            VK + + M+      + +L  G     +  KV   N +G+  GP+ +    + G  +   
Sbjct: 114  VKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYS 173
Query: 886  TKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKKGSVWGR---LGAEVTAIEFMNAIG 942
             +  LIATG E   + GI  D+E  +SS    SL      G+   +GA   A+E    + 
Sbjct: 174  AERFLIATG-ERPRYLGIPGDKEYCISSDDLFSLPYCP--GKTLVVGASYVALECAGFLA 230
Query: 943  GMGIDGEVAKQFQRILG-KQGMQFKLGTKVT--GASKSGDNITVTIENVK---------- 989
            G+G+D  V  +   + G  Q M  K+G  +   G       + + +E ++          
Sbjct: 231  GIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVV 290
Query: 990  -DPTKKEEL---SCDALLVCVGRRPYTHNLGLEEIGIEKDEK-GRVPVNSRFQTVIPNIF 1044
               T  EE+     + +++ +GR   T  +GLE +G++ +EK G++PV    QT +P I+
Sbjct: 291  AQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIY 350
Query: 1045 AIGDCI 1050
            AIGD +
Sbjct: 351  AIGDIL 356

>pdb|2X50|A Chain A, Crystal Structure Of Trypanothione Reductase From Leishmania Infantum In Complex With Nadph And Silver Length = 510

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 116/269 (43%), Gaps = 29/269 (10%)
Query: 829  NLETMMGTKSAAVKALTGGIAHLFKSNKVTQLN-GHGKITGPNTVTVIKSDGS----TEE 883
            N +T++  K+  V ++      +F   +    + G G +   +TV V KS+       E 
Sbjct: 111  NWKTLIAAKNKVVNSINESYKSMFADTEGLSFHMGFGALQDAHTVVVRKSEDPHSDVLET 170
Query: 884  VKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGG 943
            + T+ ILIATGS  T   G+  DE  I S+              +G    A+EF     G
Sbjct: 171  LDTEYILIATGSWPTRL-GVPGDEFCITSNEAFYLEDAPKRMLCVGGGYIAVEFAGIFNG 229
Query: 944  M------------------GIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTI 985
                               G D EV K   + LG  G++ +     T  +K+ D      
Sbjct: 230  YKPCGGYVDLCYRGDLILRGFDTEVRKSLTKQLGANGIRVRTNLNPTKITKNEDGSNHV- 288
Query: 986  ENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFA 1045
             +  D T+++    D +++ +GR P +  L L++ G+   + G V V++  +T + NI+A
Sbjct: 289  -HFNDGTEEDY---DQVMLAIGRVPRSQALQLDKAGVRTGKNGAVQVDAYSKTSVDNIYA 344
Query: 1046 IGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
            IGD  +  ML   A +EG   VE + G K
Sbjct: 345  IGDVTNRVMLTPVAINEGAAFVETVFGGK 373

>pdb|2JK6|A Chain A, Structure Of Trypanothione Reductase From Leishmania Infantum Length = 511

Iteration: 1
 Score = 67.0 bits (162), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 116/269 (43%), Gaps = 29/269 (10%)
Query: 829  NLETMMGTKSAAVKALTGGIAHLFKSNKVTQLN-GHGKITGPNTVTVIKSDGSTEEV--- 884
            N +T++  K+  V ++      +F   +    + G G +   +TV V KS+    +V   
Sbjct: 111  NWKTLIAAKNKVVNSINESYKSMFADTEGLSFHMGFGALQDAHTVVVRKSEDPHSDVLET 170
Query: 885  -KTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGG 943
              T+ ILIATGS  T   G+  DE  I S+              +G    A+EF     G
Sbjct: 171  LDTEYILIATGSWPTRL-GVPGDEFCITSNEAFYLEDAPKRMLCVGGGYIAVEFAGIFNG 229
Query: 944  M------------------GIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTI 985
                               G D EV K   + LG  G++ +     T  +K+ D      
Sbjct: 230  YKPCGGYVDLCYRGDLILRGFDTEVRKSLTKQLGANGIRVRTNLNPTKITKNEDGSNHV- 288
Query: 986  ENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFA 1045
             +  D T+++    D +++ +GR P +  L L++ G+   + G V V++  +T + NI+A
Sbjct: 289  -HFNDGTEEDY---DQVMLAIGRVPRSQALQLDKAGVRTGKNGAVQVDAYSKTSVDNIYA 344
Query: 1046 IGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
            IGD  +  ML   A +EG   VE + G K
Sbjct: 345  IGDVTNRVMLTPVAINEGAAFVETVFGGK 373

>pdb|4B1B|A Chain A, Crystal Structure Of Plasmodium Falciparum Oxidised Thioredoxin Reductase At 2.9 Angstrom Length = 542

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 113/243 (46%), Gaps = 28/243 (11%)
Query: 826  VKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTV-IKSDGSTEEV 884
            +K + + ++ T  + +++L        +S+KV  +NG  K+   NTV+  +K D S EE 
Sbjct: 124  LKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGLAKLKDKNTVSYYLKGDLSKEET 183
Query: 885  KT-KNILIATGSEVTPFPGIEVDEETIVSSTGALSLKKGSVWGR---LGAEVTAIE---F 937
             T K ILIATG        +E  +E  ++S    SLKK    G+   +GA   A+E   F
Sbjct: 184  VTGKYILIATGCRPHIPDDVEGAKELSITSDDIFSLKKDP--GKTLVVGASYVALECSGF 241
Query: 938  MNAIGG-----------MGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIE 986
            +N++G             G D + A + +  + +QG+ FK G      +K  D I V   
Sbjct: 242  LNSLGYDVTVAVRSIVLRGFDQQCAVKVKLYMEEQGVMFKNGILPKKLTKMDDKILVEFS 301
Query: 987  NVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQ-TVIPNIFA 1045
            +     K  EL  D +L  +GR+     L LE + +  ++     +      T IP+IFA
Sbjct: 302  D-----KTSELY-DTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIADHLSCTNIPSIFA 355
Query: 1046 IGD 1048
            +GD
Sbjct: 356  VGD 358

>pdb|1GES|A Chain A, Anatomy Of An Engineered Nad-Binding Site Length = 450

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 103/238 (43%), Gaps = 28/238 (11%)
Query: 827  KLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKT 886
            K N ET++ +++A +  +     ++   N V  + G  +     T+ V     + E +  
Sbjct: 78   KFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEV-----NGETITA 132
Query: 887  KNILIATGSEVT--PFPGIE-------------VDEETIVSSTGALSLKKGSVWGRLGAE 931
             +ILIATG   +    PG+E             + E   V   G + ++ G V   LGA+
Sbjct: 133  DHILIATGGRPSHPDIPGVEYGIDSDGFFALPALPERVAVVGAGYIGVELGGVINGLGAK 192
Query: 932  VTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGD-NITVTIENVKD 990
                E  +A      D  +++    ++  +G Q           K+ D ++T+ +E+ + 
Sbjct: 193  THLFEMFDA-PLPSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRS 251
Query: 991  PTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGD 1048
             T       D L+  +GR P   N+ LE  G++ +EKG + V+    T I  I+A+GD
Sbjct: 252  ET------VDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGD 303

>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione Reductase (Smtgr) Length = 596

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 112/261 (42%), Gaps = 30/261 (11%)
Query: 829  NLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKN 888
            N  TM+    + + +L  G     + N+VT LN  G++  P+ V +   +     +    
Sbjct: 193  NWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISPHEVQITDKNQKVSTITGNK 252
Query: 889  ILIATGSEVTPFP--------GIEVDE---------ETIVSSTGALSLKKGSVWGRLGAE 931
            I++ATG E   +P        GI  D+         +T+V     ++L+       LG +
Sbjct: 253  IILATG-ERPKYPEIPGAVEYGITSDDLFSLPYFPGKTLVIGASYVALECAGFLASLGGD 311
Query: 932  VTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQF-KLGT-------KVTGASKSGDNITV 983
            VT +  + +I   G D ++A++    +   G++F KL         KV     +   + +
Sbjct: 312  VTVM--VRSILLRGFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLL 369
Query: 984  TIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNI 1043
               +  D  K EE   + ++  VGR P    +  E +G++ D+ GRV      QT + N+
Sbjct: 370  VKGHYTDGKKFEE-EFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDDEQTTVSNV 428
Query: 1044 FAIGDCIHG-PMLAHKAEDEG 1063
            +AIGD   G P L   A   G
Sbjct: 429  YAIGDINAGKPQLTPVAIQAG 449

>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni With The Reduced C-Terminal End Length = 598

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 112/261 (42%), Gaps = 30/261 (11%)
Query: 829  NLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKN 888
            N  TM+    + + +L  G     + N+VT LN  G++  P+ V +   +     +    
Sbjct: 193  NWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISPHEVQITDKNQKVSTITGNK 252
Query: 889  ILIATGSEVTPFP--------GIEVDE---------ETIVSSTGALSLKKGSVWGRLGAE 931
            I++ATG E   +P        GI  D+         +T+V     ++L+       LG +
Sbjct: 253  IILATG-ERPKYPEIPGAVEYGITSDDLFSLPYFPGKTLVIGASYVALECAGFLASLGGD 311
Query: 932  VTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQF-KLGT-------KVTGASKSGDNITV 983
            VT +  + +I   G D ++A++    +   G++F KL         KV     +   + +
Sbjct: 312  VTVM--VRSILLRGFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLL 369
Query: 984  TIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNI 1043
               +  D  K EE   + ++  VGR P    +  E +G++ D+ GRV      QT + N+
Sbjct: 370  VKGHYTDGKKFEE-EFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDDEQTTVSNV 428
Query: 1044 FAIGDCIHG-PMLAHKAEDEG 1063
            +AIGD   G P L   A   G
Sbjct: 429  YAIGDINAGKPQLTPVAIQAG 449

>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione Reductase From Schistosoma Mansoni In Complex With Auranofin Length = 598

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 112/261 (42%), Gaps = 30/261 (11%)
Query: 829  NLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKN 888
            N  TM+    + + +L  G     + N+VT LN  G++  P+ V +   +     +    
Sbjct: 193  NWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISPHEVQITDKNQKVSTITGNK 252
Query: 889  ILIATGSEVTPFP--------GIEVDE---------ETIVSSTGALSLKKGSVWGRLGAE 931
            I++ATG E   +P        GI  D+         +T+V     ++L+       LG +
Sbjct: 253  IILATG-ERPKYPEIPGAVEYGITSDDLFSLPYFPGKTLVIGASYVALECAGFLASLGGD 311
Query: 932  VTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQF-KLGT-------KVTGASKSGDNITV 983
            VT +  + +I   G D ++A++    +   G++F KL         KV     +   + +
Sbjct: 312  VTVM--VRSILLRGFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLL 369
Query: 984  TIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNI 1043
               +  D  K EE   + ++  VGR P    +  E +G++ D+ GRV      QT + N+
Sbjct: 370  VKGHYTDGKKFEE-EFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDDEQTTVSNV 428
Query: 1044 FAIGDCIHG-PMLAHKAEDEG 1063
            +AIGD   G P L   A   G
Sbjct: 429  YAIGDINAGKPQLTPVAIQAG 449

>pdb|1MO9|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl Coenzyme M Length = 523

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 90/211 (42%), Gaps = 26/211 (12%)
Query: 885  KTKNILIATGSE--VTPFPGIEV----DEETIVSSTGALSLKKGSVWGRLGAEVTAIE-- 936
            K KN+++A G+       PG+      D  T+V     L  + GS    +G   TA+E  
Sbjct: 174  KAKNLILAVGAGPGTLDVPGVNAKGVFDHATLVEE---LDYEPGSTVVVVGGSKTAVEYG 230
Query: 937  -FMNAIGGMGI------------DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITV 983
             F NA G   +            D E        + +QGM+   G+ VT   +   N  V
Sbjct: 231  CFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDA-NGRV 289
Query: 984  TIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNI 1043
                   P  +  +  D + + +G +P +  L  + +G++   KG V VN   QT +PN+
Sbjct: 290  QAVVAMTPNGEMRIETDFVFLGLGEQPRSAELA-KILGLDLGPKGEVLVNEYLQTSVPNV 348
Query: 1044 FAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
            +A+GD I GPM   KA   G      + G+K
Sbjct: 349  YAVGDLIGGPMEMFKARKSGCYAARNVMGEK 379

>pdb|3L8K|A Chain A, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From Sulfolobus Solfataricus Length = 466

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 96/212 (45%), Gaps = 25/212 (11%)
Query: 857  VTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPF--PGIE---------- 904
            +T   G+ KI  P  V V   +G   E +T+ ++IA+G+E      PG+E          
Sbjct: 104  LTFYKGYVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETAKLRLPGVEYCLTSDDIFG 163
Query: 905  -------VDEETIVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRI 957
                   + ++ ++   G + L+  S++  +G +   IE ++       D ++      I
Sbjct: 164  YKTSFRKLPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSI 223
Query: 958  LGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGL 1017
            L    +  K  + VT   K  D+    I + KD +KK  +  +++++  GRRP     G 
Sbjct: 224  LK---LNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKS-IFTNSVVLAAGRRPVIPE-GA 278
Query: 1018 EEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDC 1049
             EIG+   + G V V+   +T IPN+FA GD 
Sbjct: 279  REIGLSISKTGIV-VDETMKTNIPNVFATGDA 309

>pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia Coli At 1.86 Angstroms Resolution: Comparison With The Enzyme From Human Erythrocytes Length = 450

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 102/241 (42%), Gaps = 34/241 (14%)
Query: 827  KLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKT 886
            K N ET++ +++A +  +     ++   N V  + G  +     T+ V     + E +  
Sbjct: 78   KFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEV-----NGETITA 132
Query: 887  KNILIATGSEVT--PFPGIEVDEETIVSSTGALSLKK-GSVWGRLGAEVTAIEFMNAIGG 943
             +ILIATG   +    PG+E      + S G  +L         +GA   A+E    I G
Sbjct: 133  DHILIATGGRPSHPDIPGVEYG----IDSDGFFALPALPERVAVVGAGYIAVELAGVING 188
Query: 944  MG---------------IDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGD-NITVTIEN 987
            +G                D  +++    ++  +G Q           K+ D ++T+ +E+
Sbjct: 189  LGAKTHLFVRKHAPLRSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELED 248
Query: 988  VKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIG 1047
             +  T       D L+  +GR P   N+ LE  G++ +EKG + V+    T I  I+A+G
Sbjct: 249  GRSET------VDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVG 302
Query: 1048 D 1048
            D
Sbjct: 303  D 303

>pdb|1FEA|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase At 2.2 Angstrom Resolution Length = 490

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 119/277 (42%), Gaps = 39/277 (14%)
Query: 826  VKLNLETMMGTKSAAVKALTGGIAHLFKSNK-VTQLNGHGKITGPNTVTVIKS----DGS 880
            V+ N + ++  K+ AV  +      +F   + +T   G G +   +TV V +S       
Sbjct: 87   VRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAV 146
Query: 881  TEEVKTKNILIATGSEVTPFP---GIEVDEETIVSSTGALSLKKGSVWGR-LGAEVTAIE 936
             E + T+ IL+ATGS    +P   GIE D+  I S+  A  L +       +G    +IE
Sbjct: 147  LETLDTEYILLATGS----WPQHLGIEGDDLCITSNE-AFYLDEAPKRALCVGGGYISIE 201
Query: 937  FMN------AIGGM------------GIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSG 978
            F        A GG             G D E+ KQ    L   G+  +        +K+ 
Sbjct: 202  FAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNA 261
Query: 979  DNIT-VTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQ 1037
            D    V  E+        E   D +++ +GR P +  L LE+ G+E  + G + V++  +
Sbjct: 262  DGTRHVVFES------GAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVDAYSK 315
Query: 1038 TVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
            T + NI+AIGD     ML   A +EG   V+ +  +K
Sbjct: 316  TNVDNIYAIGDVTDRVMLTPVAINEGAAFVDTVFANK 352

>pdb|2TPR|A Chain A, X-ray Structure Of Trypanothione Reductase From Crithidia Fasciculata At 2.4 Angstroms Resolution Length = 490

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 119/277 (42%), Gaps = 39/277 (14%)
Query: 826  VKLNLETMMGTKSAAVKALTGGIAHLFKSNK-VTQLNGHGKITGPNTVTVIKS----DGS 880
            V+ N + ++  K+ AV  +      +F   + +T   G G +   +TV V +S       
Sbjct: 87   VRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAV 146
Query: 881  TEEVKTKNILIATGSEVTPFP---GIEVDEETIVSSTGALSLKKGSVWGR-LGAEVTAIE 936
             E + T+ IL+ATGS    +P   GIE D+  I S+  A  L +       +G    +IE
Sbjct: 147  LETLDTEYILLATGS----WPQHLGIEGDDLCITSNE-AFYLDEAPKRALCVGGGYISIE 201
Query: 937  FMN------AIGGM------------GIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSG 978
            F        A GG             G D E+ KQ    L   G+  +        +K+ 
Sbjct: 202  FAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNA 261
Query: 979  DNIT-VTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQ 1037
            D    V  E+        E   D +++ +GR P +  L LE+ G+E  + G + V++  +
Sbjct: 262  DGTRHVVFES------GAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVDAYSK 315
Query: 1038 TVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
            T + NI+AIGD     ML   A +EG   V+ +  +K
Sbjct: 316  TNVDNIYAIGDVTDRVMLTPVAINEGAAFVDTVFANK 352

>pdb|1ZK7|A Chain A, Crystal Structure Of Tn501 Mera Length = 467

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 101/222 (45%), Gaps = 34/222 (15%)
Query: 857  VTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSE--VTPFPGIEVDEETIVSST 914
            +T ++G  +     ++TV  ++G    V     L+ATG+   V P PG++  E    +ST
Sbjct: 110  ITVVHGEARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPAVPPIPGLK--ESPYWTST 167
Query: 915  GALSLKKGSVWGRL---GAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFK----L 967
             AL+    ++  RL   G+ V A+E   A   +G           +L +  + F+    +
Sbjct: 168  EALA--SDTIPERLAVIGSSVVALELAQAFARLG-------SKVTVLARNTLFFREDPAI 218
Query: 968  GTKVTGASKSGDNITVTIENVKDP------------TKKEELSCDALLVCVGRRPYTHNL 1015
            G  VT A ++ + I V +E+ +              T   EL  D LLV  GR P T +L
Sbjct: 219  GEAVTAAFRA-EGIEV-LEHTQASQVAHMDGEFVLTTTHGELRADKLLVATGRTPNTRSL 276
Query: 1016 GLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAH 1057
             L+  G+  + +G + ++   +T  PNI+A GDC   P   +
Sbjct: 277  ALDAAGVTVNAQGAIVIDQGMRTSNPNIYAAGDCTDQPQFVY 318

>pdb|4DNA|A Chain A, Crystal Structure Of Putative Glutathione Reductase From Sinorhizobium Meliloti 1021 Length = 463

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 92/204 (45%), Gaps = 23/204 (11%)
Query: 860  LNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTP---FPGIEVDEETIVSSTGA 916
            L+   ++ GPNTV ++ S G T  V  + I+IA G   +P    PG     E  ++S  A
Sbjct: 111  LDTRAELAGPNTVKLLAS-GKT--VTAERIVIAVGGHPSPHDALPG----HELCITSNEA 163
Query: 917  LSLK--KGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGA 974
              L     S+    G    A+EF N   G+G+   +  + + IL +     + G      
Sbjct: 164  FDLPALPESIL-IAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSRFDQDXRRGLHAAXE 222
Query: 975  SKS----GDNITVTI------ENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEK 1024
             K      ++I  ++        V    K  E+  D + + +GR P T+ LGLE  G+  
Sbjct: 223  EKGIRILCEDIIQSVSADADGRRVATTXKHGEIVADQVXLALGRXPNTNGLGLEAAGVRT 282
Query: 1025 DEKGRVPVNSRFQTVIPNIFAIGD 1048
            +E G + V++  +T  P I+A+GD
Sbjct: 283  NELGAIIVDAFSRTSTPGIYALGD 306

>pdb|2WBA|A Chain A, Properties Of Trypanothione Reductase From T. Brucei Length = 492

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 120/273 (43%), Gaps = 31/273 (11%)
Query: 826  VKLNLETMMGTKSAAVKALTGGIAHLFKSNK-VTQLNGHGKITGPNTVTVIKSDGSTEEV 884
            VK N + ++  K+ AV  +      +F   + +    G G +   N V V ++      V
Sbjct: 88   VKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLESKNVVVVRETADPKSAV 147
Query: 885  KTK----NILIATGS--EVTPFPGIE-------------VDEETIVSSTGALSLKKGSVW 925
            K +    +IL+ATGS  ++   PGIE                  +    G +S++   ++
Sbjct: 148  KERLQADHILLATGSWPQMPAIPGIEHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIF 207
Query: 926  GRL---GAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNIT 982
                  G +VT + + N +   G D  + ++  + L   G++          S + D   
Sbjct: 208  NAYKPPGGKVT-LCYRNNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSK 266
Query: 983  -VTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIP 1041
             VT E+ K       L  D +++ +GR P T++L L  +G++   KG V V+   +T +P
Sbjct: 267  HVTFESGK------TLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVP 320
Query: 1042 NIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
            NI+AIGD     ML   A +EG   V+ + G+K
Sbjct: 321  NIYAIGDITDRLMLTPVAINEGAALVDTVFGNK 353

>pdb|2WOI|A Chain A, Trypanothione Reductase From Trypanosoma Brucei Length = 495

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 120/273 (43%), Gaps = 31/273 (11%)
Query: 826  VKLNLETMMGTKSAAVKALTGGIAHLFKSNK-VTQLNGHGKITGPNTVTVIKSDGSTEEV 884
            VK N + ++  K+ AV  +      +F   + +    G G +   N V V ++      V
Sbjct: 91   VKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLESKNVVVVRETADPKSAV 150
Query: 885  KTK----NILIATGS--EVTPFPGIE-------------VDEETIVSSTGALSLKKGSVW 925
            K +    +IL+ATGS  ++   PGIE                  +    G +S++   ++
Sbjct: 151  KERLQADHILLATGSWPQMPAIPGIEHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIF 210
Query: 926  GRL---GAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNIT 982
                  G +VT + + N +   G D  + ++  + L   G++          S + D   
Sbjct: 211  NAYKPPGGKVT-LCYRNNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSK 269
Query: 983  -VTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIP 1041
             VT E+ K       L  D +++ +GR P T++L L  +G++   KG V V+   +T +P
Sbjct: 270  HVTFESGK------TLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVP 323
Query: 1042 NIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
            NI+AIGD     ML   A +EG   V+ + G+K
Sbjct: 324  NIYAIGDITDRLMLTPVAINEGAALVDTVFGNK 356

>pdb|1TYT|A Chain A, Crystal And Molecular Structure Of Crithidia Fasciculata Trypanothione Reductase At 2.6 Angstroms Resolution Length = 487

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 119/277 (42%), Gaps = 39/277 (14%)
Query: 826  VKLNLETMMGTKSAAVKALTGGIAHLFKSNK-VTQLNGHGKITGPNTVTVIKS----DGS 880
            V+ N + ++  K+ AV  +      +F   + +T   G G +   +TV V +S       
Sbjct: 88   VRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAV 147
Query: 881  TEEVKTKNILIATGSEVTPFP---GIEVDEETIVSSTGALSLKKGSVWGR-LGAEVTAIE 936
             E + T+ IL+ATGS    +P   GIE D+  I S+  A  L +       +G    +IE
Sbjct: 148  LETLDTEYILLATGS----WPQHLGIEGDDLCITSNE-AFYLDEAPKRALCVGGGYISIE 202
Query: 937  F------MNAIGGM------------GIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSG 978
            F        A GG             G D E+ KQ    L   G+  +        +K+ 
Sbjct: 203  FAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNA 262
Query: 979  DNIT-VTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQ 1037
            D    V  E+        E   D +++ +GR P +  L L++ G+E  + G + V++  +
Sbjct: 263  DGTRHVVFES------GAEADYDVVMLAIGRVPRSQTLQLDKAGVEVAKNGAIKVDAYSK 316
Query: 1038 TVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
            T + NI+AIGD     ML   A +EG   V+ +  +K
Sbjct: 317  TNVDNIYAIGDVTDRVMLTPVAINEGAAFVDTVFANK 353

>pdb|1TYP|A Chain A, Substrate Interactions Between Trypanothione Reductase And N1-Glutathionylspermidine Disulphide At 0.28-Nm Resolution Length = 487

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 119/277 (42%), Gaps = 39/277 (14%)
Query: 826  VKLNLETMMGTKSAAVKALTGGIAHLFKSNK-VTQLNGHGKITGPNTVTVIKS----DGS 880
            V+ N + ++  K+ AV  +      +F   + +T   G G +   +TV V +S       
Sbjct: 88   VRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGWGALQDNHTVLVRESADPNSAV 147
Query: 881  TEEVKTKNILIATGSEVTPFP---GIEVDEETIVSSTGALSLKKGSVWGR-LGAEVTAIE 936
             E + T+ IL+ATGS    +P   GIE D+  I S+  A  L +       +G    +IE
Sbjct: 148  LETLDTEYILLATGS----WPQHLGIEGDDLCITSNE-AFYLDEAPKRALCVGGGYISIE 202
Query: 937  FMN------AIGGM------------GIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSG 978
            F        A GG             G D E+ KQ    L   G+  +        +K+ 
Sbjct: 203  FAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNA 262
Query: 979  DNIT-VTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQ 1037
            D    V  E+        E   D +++ +GR P +  L L++ G+E  + G + V++  +
Sbjct: 263  DGTRHVVFES------GAEADYDVVMLAIGRVPRSQTLQLDKAGVEVAKNGAIKVDAYSK 316
Query: 1038 TVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
            T + NI+AIGD     ML   A +EG   V+ +  +K
Sbjct: 317  TNVDNIYAIGDVTDRVMLTPVAINEGAAFVDTVFANK 353

>pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile Length = 463

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 98/213 (46%), Gaps = 36/213 (16%)
Query: 857  VTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSE--VTPFPGIEVDEETIVSST 914
            +T+++GH +    +T+ V       + +   +I+IATG    V   PG E+     ++S 
Sbjct: 107  ITRVDGHARFVDAHTIEV-----EGQRLSADHIVIATGGRPIVPRLPGAELG----ITSD 157
Query: 915  GALSLKK--------GSVWGRLGAEVTAI--EFMNAIGGMGIDGEVAKQFQRILGK---- 960
            G  +L++        G+  G +G E+  +   F + +  + ++  +  QF  +L      
Sbjct: 158  GFFALQQQPKRVAIIGA--GYIGIELAGLLRSFGSEVTVVALEDRLLFQFDPLLSATLAE 215
Query: 961  ----QGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLG 1016
                QG++  L   V    +     T+     +D T+ E    D+++  VGR P T +LG
Sbjct: 216  NMHAQGIETHLEFAVAALERDAQGTTLV---AQDGTRLE--GFDSVIWAVGRAPNTRDLG 270
Query: 1017 LEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDC 1049
            LE  GIE    G VP ++   T +P ++A+GD 
Sbjct: 271  LEAAGIEVQSNGMVPTDAYQNTNVPGVYALGDI 303

>pdb|3DGZ|A Chain A, Crystal Structure Of Mouse Mitochondrial Thioredoxin Reductase, C- Terminal 3-Residue Truncation Length = 488

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 106/247 (42%), Gaps = 24/247 (9%)
Query: 826  VKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVK 885
            V+ N +TM       VK+L  G     +  KV   N        +TV  +   G    + 
Sbjct: 88   VQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVDKGGKATLLS 147
Query: 886  TKNILIATGSEVTPFP---------GIEVDE---------ETIVSSTGALSLKKGSVWGR 927
             ++I+IATG     +P         GI  D+         +T+V     ++L+       
Sbjct: 148  AEHIVIATGGRPR-YPTQVKGALEYGITSDDIFWLKESPGKTLVVGASYVALECAGFLTG 206
Query: 928  LGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIE 986
            +G + T +  M +I   G D +++      +   G QF  G   +   K   N + VT E
Sbjct: 207  IGLDTTVM--MRSIPLRGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWE 264
Query: 987  NVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKG-RVPVNSRFQTVIPNIFA 1045
            +     K++  + D +L  +GR P T  L LE+ GI  + K  ++ V+++  T +P+I+A
Sbjct: 265  D-HASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEATSVPHIYA 323
Query: 1046 IGDCIHG 1052
            IGD   G
Sbjct: 324  IGDVAEG 330

>pdb|1ZDL|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2 Length = 517

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 106/247 (42%), Gaps = 24/247 (9%)
Query: 826  VKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVK 885
            V+ N +TM       VK+L  G     +  KV   N        +TV  +   G    + 
Sbjct: 114  VQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVDKGGKATLLS 173
Query: 886  TKNILIATGSEVTPFP---------GIEVDE---------ETIVSSTGALSLKKGSVWGR 927
             ++I+IATG     +P         GI  D+         +T+V     ++L+       
Sbjct: 174  AEHIVIATGGRPR-YPTQVKGALEYGITSDDIFWLKESPGKTLVVGASYVALECAGFLTG 232
Query: 928  LGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIE 986
            +G + T +  M +I   G D +++      +   G QF  G   +   K   N + VT E
Sbjct: 233  IGLDTTVM--MRSIPLRGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWE 290
Query: 987  NVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKG-RVPVNSRFQTVIPNIFA 1045
            +     K++  + D +L  +GR P T  L LE+ GI  + K  ++ V+++  T +P+I+A
Sbjct: 291  D-HASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEATSVPHIYA 349
Query: 1046 IGDCIHG 1052
            IGD   G
Sbjct: 350  IGDVAEG 356

>pdb|1XDI|A Chain A, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium Tuberculosis Length = 499

Iteration: 1
 Score = 52.8 bits (125), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 82/201 (40%), Gaps = 46/201 (22%)
Query: 877  SDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKKGSVWGRL-------- 928
            +DGST E +   +L+ATG+     P  + D E I++            W +L        
Sbjct: 136  ADGSTSEHEADVVLVATGASPRILPSAQPDGERILT------------WRQLYDLDALPD 183
Query: 929  -----GAEVTAIEFMNAIGGMGI---------------DGEVAKQFQRILGKQGMQFKLG 968
                 G+ VT  EF++A   +G+               D + A   +    ++G++    
Sbjct: 184  HLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPYEDADAALVLEESFAERGVRLFKN 243
Query: 969  TKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKG 1028
             +    +++G  + VT+      T    +     L+ +G  P T  LGLE +GI+     
Sbjct: 244  ARAASVTRTGAGVLVTM------TDGRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGN 297
Query: 1029 RVPVNSRFQTVIPNIFAIGDC 1049
             + V+   +T+   I+A GDC
Sbjct: 298  YLTVDRVSRTLATGIYAAGDC 318

>pdb|3OC4|A Chain A, Crystal Structure Of A Pyridine Nucleotide-Disulfide Family Oxidoreductase From The Enterococcus Faecalis V583 Length = 452

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 10/105 (9%)
Query: 946  IDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVC 1005
             D E   + Q+ L KQ + F     V G  ++ + I +        T ++E+SCD+ +  
Sbjct: 187  FDKEXVAEVQKSLEKQAVIFHFEETVLGIEETANGIVL-------ETSEQEISCDSGIFA 239
Query: 1006 VGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCI 1050
            +   P    L   +  I+++    + V++  QT +PN+FAIGDCI
Sbjct: 240  LNLHP---QLAYLDKKIQRNLDQTIAVDAYLQTSVPNVFAIGDCI 281

>pdb|3DGH|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase, C-Terminal 8- Residue Truncation Length = 483

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 96/217 (44%), Gaps = 20/217 (9%)
Query: 852  FKSNKVTQLNGHGKITGPNTVTV-IKSDGSTEEVKTKNILIATGSEVTPFPG-------- 902
             +  KV  +NG G     +T+   +KS   T   +T  I +         PG        
Sbjct: 118  LRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDIPGAVEYGITS 177
Query: 903  ---IEVDEE---TIVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQR 956
                 +D E   T+V   G + L+       LG E T +  + +I   G D ++A+    
Sbjct: 178  DDLFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVM--VRSIVLRGFDQQMAELVAA 235
Query: 957  ILGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNL 1015
             + ++G+ F   T      K  D  + V  +NV+   + E++  D +L  +GR+    +L
Sbjct: 236  SMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVY-DTVLWAIGRKGLVDDL 294
Query: 1016 GLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHG 1052
             L   G+   +K ++PV+S+  T + NI+A+GD I+G
Sbjct: 295  NLPNAGVTV-QKDKIPVDSQEATNVANIYAVGDIIYG 330

>pdb|3DH9|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase, Wild-Type Length = 482

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 96/217 (44%), Gaps = 20/217 (9%)
Query: 852  FKSNKVTQLNGHGKITGPNTVTV-IKSDGSTEEVKTKNILIATGSEVTPFPG-------- 902
             +  KV  +NG G     +T+   +KS   T   +T  I +         PG        
Sbjct: 114  LRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDIPGAVEYGITS 173
Query: 903  ---IEVDEE---TIVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQR 956
                 +D E   T+V   G + L+       LG E T +  + +I   G D ++A+    
Sbjct: 174  DDLFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVM--VRSIVLRGFDQQMAELVAA 231
Query: 957  ILGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNL 1015
             + ++G+ F   T      K  D  + V  +NV+   + E++  D +L  +GR+    +L
Sbjct: 232  SMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVY-DTVLWAIGRKGLVDDL 290
Query: 1016 GLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHG 1052
             L   G+   +K ++PV+S+  T + NI+A+GD I+G
Sbjct: 291  NLPNAGVTV-QKDKIPVDSQEATNVANIYAVGDIIYG 326

>pdb|2NVK|X Chain X, Crystal Structure Of Thioredoxin Reductase From Drosophila Melanogaster Length = 488

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 96/217 (44%), Gaps = 20/217 (9%)
Query: 852  FKSNKVTQLNGHGKITGPNTVTV-IKSDGSTEEVKTKNILIATGSEVTPFPG-------- 902
             +  KV  +NG G     +T+   +KS   T   +T  I +         PG        
Sbjct: 118  LRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDIPGAVEYGITS 177
Query: 903  ---IEVDEE---TIVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQR 956
                 +D E   T+V   G + L+       LG E T +  + +I   G D ++A+    
Sbjct: 178  DDLFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVM--VRSIVLRGFDQQMAELVAA 235
Query: 957  ILGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNL 1015
             + ++G+ F   T      K  D  + V  +NV+   + E++  D +L  +GR+    +L
Sbjct: 236  SMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVY-DTVLWAIGRKGLVDDL 294
Query: 1016 GLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHG 1052
             L   G+   +K ++PV+S+  T + NI+A+GD I+G
Sbjct: 295  NLPNAGVTV-QKDKIPVDSQEATNVANIYAVGDIIYG 330

>pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(p)h Specificity Length = 480

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 70/146 (47%), Gaps = 11/146 (7%)
Query: 904  EVDEETIVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGM 963
            +V++ TI+   GA+ L+    +  LG +V  IE  + IG +  DG++A+   +   K  +
Sbjct: 185  KVEDVTIIGG-GAIGLEMAETFVELGKKVRMIERNDHIGTI-YDGDMAEYIYKEADKHHI 242
Query: 964  QFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIE 1023
            +  L  +   A K  + +          T K     D +LV VG +P T  L  E   I 
Sbjct: 243  EI-LTNENVKAFKGNERVEAV------ETDKGTYKADLVLVSVGVKPNTDFL--EGTNIR 293
Query: 1024 KDEKGRVPVNSRFQTVIPNIFAIGDC 1049
             + KG + VN+  QT + +++A GDC
Sbjct: 294  TNHKGAIEVNAYMQTNVQDVYAAGDC 319

>pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: Wild-Type Nox Length = 490

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 10/139 (7%)
Query: 911  VSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTK 970
            V   G + ++    + R G EV  I+ ++       D ++     + + + G+Q   G  
Sbjct: 199  VVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGET 258
Query: 971  VTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRV 1030
            V   + +G      +E +   T K E   D +++ VG RP T  LG  +I + ++  G  
Sbjct: 259  VKEVAGNG-----KVEKI--ITDKNEYDVDMVILAVGFRPNT-TLGNGKIDLFRN--GAF 308
Query: 1031 PVNSRFQTVIPNIFAIGDC 1049
             VN R +T IP ++AIGDC
Sbjct: 309  LVNKRQETSIPGVYAIGDC 327

>pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: C44s Nox Length = 490

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 10/139 (7%)
Query: 911  VSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTK 970
            V   G + ++    + R G EV  I+ ++       D ++     + + + G+Q   G  
Sbjct: 199  VVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGET 258
Query: 971  VTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRV 1030
            V   + +G      +E +   T K E   D +++ VG RP T  LG  +I + ++  G  
Sbjct: 259  VKEVAGNG-----KVEKI--ITDKNEYDVDMVILAVGFRPNT-TLGNGKIDLFRN--GAF 308
Query: 1031 PVNSRFQTVIPNIFAIGDC 1049
             VN R +T IP ++AIGDC
Sbjct: 309  LVNKRQETSIPGVYAIGDC 327

>pdb|3CGB|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(P)h Specificity Length = 480

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 69/146 (47%), Gaps = 11/146 (7%)
Query: 904  EVDEETIVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGM 963
            +V++ TI+   GA+ L+    +  LG +V  IE  + IG +  DG+ A+   +   K  +
Sbjct: 185  KVEDVTIIGG-GAIGLEXAETFVELGKKVRXIERNDHIGTI-YDGDXAEYIYKEADKHHI 242
Query: 964  QFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIE 1023
            +  L  +   A K  + +          T K     D +LV VG +P T  L  E   I 
Sbjct: 243  EI-LTNENVKAFKGNERVEAV------ETDKGTYKADLVLVSVGVKPNTDFL--EGTNIR 293
Query: 1024 KDEKGRVPVNSRFQTVIPNIFAIGDC 1049
             + KG + VN+  QT + +++A GDC
Sbjct: 294  TNHKGAIEVNAYXQTNVQDVYAAGDC 319

>pdb|3CTY|A Chain A, Crystal Structure Of T. Acidophilum Thioredoxin Reductase Length = 319

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 978  GDNITVTIENVKDPTKKEE--LSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSR 1035
            GD   VT    KD T  EE  +  D + + VG  P T  L  ++ G++ DE+G + V+SR
Sbjct: 218  GDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFL--KDSGVKLDERGYIVVDSR 275
Query: 1036 FQTVIPNIFAIGDCIHG 1052
             +T +P ++A GD   G
Sbjct: 276  QRTSVPGVYAAGDVTSG 292

>pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase In The Oxidized And Nadph Reduced State Length = 491

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 101/234 (43%), Gaps = 31/234 (13%)
Query: 862  GHGKITGPNTVTVIKS----DGSTEEVKTKNILIATGS--EVTPFPGIEVDEETIVSSTG 915
            G G +   N V V +S        E ++T+NIL+A+GS   +   PGIE      +SS  
Sbjct: 125  GWGSLESKNVVNVRESADPASAVKERLETENILLASGSWPHMPNIPGIE----HCISSNE 180
Query: 916  ALSLKKGSVWG-RLGAEVTAIEFMNAIGGMGI-DGEVAKQFQRILGKQGMQFKLGTKVTG 973
            A  L +       +G    ++EF          DG+V   ++  +  +G    L  ++T 
Sbjct: 181  AFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTK 240
Query: 974  ASKSGDNITVTIENVKDPTKKE---------------ELSCDALLVCVGRRPYTHNLGLE 1018
               +     +T EN   P K E               ++  D +++ +GR P T +L L+
Sbjct: 241  QLTANGIQILTKEN---PAKVELNADGSKSVTFESGKKMDFDLVMMAIGRSPRTKDLQLQ 297
Query: 1019 EIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072
              G+   + G V V+   +T + NI+AIGD  +  ML   A +E    V+ + G
Sbjct: 298  NAGV-MIKNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAAALVDTVFG 350

>pdb|2HQM|A Chain A, Crystal Structure Of Glutathione Reductase Glr1 From The Yeast Saccharomyces Cerevisiae Length = 479

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 104/245 (42%), Gaps = 33/245 (13%)
Query: 828  LNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTK 887
             N       + A V  L G      +  KV  + G  +      V V K D +TE     
Sbjct: 91   FNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGWARFNKDGNVEVQKRDNTTEVYSAN 150
Query: 888  NILIATGSE-VTP--FPGIEVDEETIVSSTGALSL----KKGSVWGRLGAEVTAIEFMNA 940
            +IL+ATG + + P   PG E+  +    S G   L    KK  V   +GA    IE    
Sbjct: 151  HILVATGGKAIFPENIPGFELGTD----SDGFFRLEEQPKKVVV---VGAGYIGIELAGV 203
Query: 941  IGGMG------IDGE-VAKQFQRILG--------KQGMQFKLGTKVTGASKSGDNITVTI 985
              G+G      I GE V ++F   +         K+G+     +K+    K+ +   + I
Sbjct: 204  FHGLGSETHLVIRGETVLRKFDECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKI 263
Query: 986  ENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFA 1045
             ++ D    +++  D L+  +GR+ +   +G E +GI+ +   ++  +    T +PNI++
Sbjct: 264  -HMNDSKSIDDV--DELIWTIGRKSHL-GMGSENVGIKLNSHDQIIADEYQNTNVPNIYS 319
Query: 1046 IGDCI 1050
            +GD +
Sbjct: 320  LGDVV 324

>pdb|4EQX|A Chain A, Crystal Structure Of The C43s Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 13/143 (9%)
Query: 907  EETIVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFK 966
            ++ +V   G +SL+        G   T I   + I  + +D ++ +     L K+ + ++
Sbjct: 148  DKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKL-MDADMNQPILDELDKREIPYR 206
Query: 967  LGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDE 1026
            L  ++   +  G+ IT     V+          D ++  VG  P  ++  +E   I+ D 
Sbjct: 207  LNEEINAIN--GNEITFKSGKVE--------HYDMIIEGVGTHP--NSKFIESSNIKLDR 254
Query: 1027 KGRVPVNSRFQTVIPNIFAIGDC 1049
            KG +PVN +F+T +PNI+AIGD 
Sbjct: 255  KGFIPVNDKFETNVPNIYAIGDI 277

>pdb|1YQZ|A Chain A, Structure Of Coenzyme A-Disulfide Reductase From Staphylococcus Aureus Refined At 1.54 Angstrom Resolution Length = 438

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 13/143 (9%)
Query: 907  EETIVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFK 966
            ++ +V   G +SL+        G   T I   + I  + +D ++ +     L K+ + ++
Sbjct: 149  DKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKL-MDADMNQPILDELDKREIPYR 207
Query: 967  LGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDE 1026
            L  ++   +  G+ IT     V+          D ++  VG  P  ++  +E   I+ D 
Sbjct: 208  LNEEINAIN--GNEITFKSGKVE--------HYDMIIEGVGTHP--NSKFIESSNIKLDR 255
Query: 1027 KGRVPVNSRFQTVIPNIFAIGDC 1049
            KG +PVN +F+T +PNI+AIGD 
Sbjct: 256  KGFIPVNDKFETNVPNIYAIGDI 278

>pdb|4EM3|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The Covalent Inhibitor Mevs-Coa Length = 437

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 13/143 (9%)
Query: 907  EETIVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFK 966
            ++ +V   G +SL+        G   T I   + I  + +D ++ +     L K+ + ++
Sbjct: 148  DKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKL-MDADMNQPILDELDKREIPYR 206
Query: 967  LGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDE 1026
            L  ++   +  G+ IT     V+          D ++  VG  P  ++  +E   I+ D 
Sbjct: 207  LNEEINAIN--GNEITFKSGKVE--------HYDMIIEGVGTHP--NSKFIESSNIKLDR 254
Query: 1027 KGRVPVNSRFQTVIPNIFAIGDC 1049
            KG +PVN +F+T +PNI+AIGD 
Sbjct: 255  KGFIPVNDKFETNVPNIYAIGDI 277

>pdb|4EMW|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The Covalent Inhibitor Etvc-Coa Length = 436

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 13/143 (9%)
Query: 907  EETIVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFK 966
            ++ +V   G +SL+        G   T I   + I  + +D ++ +     L K+ + ++
Sbjct: 148  DKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKL-MDADMNQPILDELDKREIPYR 206
Query: 967  LGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDE 1026
            L  ++   +  G+ IT     V+          D ++  VG  P  ++  +E   I+ D 
Sbjct: 207  LNEEINAIN--GNEITFKSGKVE--------HYDMIIEGVGTHP--NSKFIESSNIKLDR 254
Query: 1027 KGRVPVNSRFQTVIPNIFAIGDC 1049
            KG +PVN +F+T +PNI+AIGD 
Sbjct: 255  KGFIPVNDKFETNVPNIYAIGDI 277

>pdb|4EQS|A Chain A, Crystal Structure Of The Y419f Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 13/143 (9%)
Query: 907  EETIVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFK 966
            ++ +V   G +SL+        G   T I   + I  + +D ++ +     L K+ + ++
Sbjct: 148  DKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKL-MDADMNQPILDELDKREIPYR 206
Query: 967  LGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDE 1026
            L  ++   +  G+ IT     V+          D ++  VG  P  ++  +E   I+ D 
Sbjct: 207  LNEEINAIN--GNEITFKSGKVE--------HYDMIIEGVGTHP--NSKFIESSNIKLDR 254
Query: 1027 KGRVPVNSRFQTVIPNIFAIGDC 1049
            KG +PVN +F+T +PNI+AIGD 
Sbjct: 255  KGFIPVNDKFETNVPNIYAIGDI 277

>pdb|4EQR|A Chain A, Crystal Structure Of The Y361f Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 13/143 (9%)
Query: 907  EETIVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFK 966
            ++ +V   G +SL+        G   T I   + I  + +D ++ +     L K+ + ++
Sbjct: 148  DKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKL-MDADMNQPILDELDKREIPYR 206
Query: 967  LGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDE 1026
            L  ++   +  G+ IT     V+          D ++  VG  P  ++  +E   I+ D 
Sbjct: 207  LNEEINAIN--GNEITFKSGKVE--------HYDMIIEGVGTHP--NSKFIESSNIKLDR 254
Query: 1027 KGRVPVNSRFQTVIPNIFAIGDC 1049
            KG +PVN +F+T +PNI+AIGD 
Sbjct: 255  KGFIPVNDKFETNVPNIYAIGDI 277

>pdb|3O0H|A Chain A, Crystal Structure Of Glutathione Reductase From Bartonella Henselae Length = 484

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 15/180 (8%)
Query: 882  EEVKTKNILIATGSEVTPFPGIEVDEETIVSST--GALSLKKGSVWGRLGAEVTAIEFMN 939
            E +  + ILIATG+++     I+  +  + S+       L K  V   +G     +EF N
Sbjct: 151  ERISAEKILIATGAKIVSNSAIKGSDLCLTSNEIFDLEKLPKSIVI--VGGGYIGVEFAN 208
Query: 940  AIGGMGIDGE-------VAKQFQ---RILGKQGMQFKLGTKVTGASKSGDNITVTIENVK 989
               G+G+          + + F    R L    M  K  + +  A+ S    T    NV 
Sbjct: 209  IFHGLGVKTTLLHRGDLILRNFDYDLRQLLNDAMVAKGISIIYEATVSQVQSTENCYNVV 268
Query: 990  DPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDC 1049
              T  + +  D +++  GR P T  LGLE  G++ +E G V V+ +  T + +I+A+GD 
Sbjct: 269  -LTNGQTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTTNVSHIWAVGDV 327

>pdb|4EQW|A Chain A, Crystal Structure Of The Y361f, Y419f Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 13/143 (9%)
Query: 907  EETIVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFK 966
            ++ +V   G +SL+        G   T I   + I  + +D ++ +     L K+ + ++
Sbjct: 148  DKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKL-MDADMNQPILDELDKREIPYR 206
Query: 967  LGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDE 1026
            L  ++   +  G+ IT     V+          D ++  VG  P  ++  +E   I+ D 
Sbjct: 207  LNEEINAIN--GNEITFKSGKVE--------HYDMIIEGVGTHP--NSKFIESSNIKLDR 254
Query: 1027 KGRVPVNSRFQTVIPNIFAIGDC 1049
            KG +PVN +F+T +PNI+AIGD 
Sbjct: 255  KGFIPVNDKFETNVPNIYAIGDI 277

>pdb|2AAQ|A Chain A, Crystal Structure Analysis Of The Human Glutahione Reductase, Complexed With Gopi Length = 479

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 100/248 (40%), Gaps = 35/248 (14%)
Query: 827  KLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKT 886
            K N   +   + A V  L     +    + +  + GH   T     T+   + S ++   
Sbjct: 94   KFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTI---EVSGKKYTA 150
Query: 887  KNILIATGS-EVTP----FPGIEVDEETIVSSTGALSLKKGSVWGR---LGAEVTAIEFM 938
             +ILIATG    TP     PG  +     ++S G   L++  + GR   +GA   A+E  
Sbjct: 151  PHILIATGGMPSTPHESQIPGASLG----ITSDGFFQLEE--LPGRSVIVGAGYIAVEMA 204
Query: 939  NAIGGMG---------------IDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITV 983
              +  +G                D  ++      L   G++    ++V    K+   + V
Sbjct: 205  GILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEV 264
Query: 984  TIENV---KDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVI 1040
            ++      + P        D LL  +GR P T +L L ++GI+ D+KG + V+    T +
Sbjct: 265  SMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNV 324
Query: 1041 PNIFAIGD 1048
              I+A+GD
Sbjct: 325  KGIYAVGD 332

>pdb|3DJG|X Chain X, Catalytic Cycle Of Human Glutathione Reductase Near 1 A Resolution Length = 477

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 100/248 (40%), Gaps = 35/248 (14%)
Query: 827  KLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKT 886
            K N   +   + A V  L     +    + +  + GH   T     T+   + S ++   
Sbjct: 92   KFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTI---EVSGKKYTA 148
Query: 887  KNILIATGS-EVTP----FPGIEVDEETIVSSTGALSLKKGSVWGR---LGAEVTAIEFM 938
             +ILIATG    TP     PG  +     ++S G   L++  + GR   +GA   A+E  
Sbjct: 149  PHILIATGGMPSTPHESQIPGASLG----ITSDGFFQLEE--LPGRSVIVGAGYIAVEMA 202
Query: 939  NAIGGMG---------------IDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITV 983
              +  +G                D  ++      L   G++    ++V    K+   + V
Sbjct: 203  GILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEV 262
Query: 984  TIENV---KDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVI 1040
            ++      + P        D LL  +GR P T +L L ++GI+ D+KG + V+    T +
Sbjct: 263  SMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNV 322
Query: 1041 PNIFAIGD 1048
              I+A+GD
Sbjct: 323  KGIYAVGD 330

>pdb|1BWC|A Chain A, Structure Of Human Glutathione Reductase Complexed With Ajoene Inhibitor And Subversive Substrate Length = 478

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 100/248 (40%), Gaps = 35/248 (14%)
Query: 827  KLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKT 886
            K N   +   + A V  L     +    + +  + GH   T     T+   + S ++   
Sbjct: 93   KFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTI---EVSGKKYTA 149
Query: 887  KNILIATGS-EVTP----FPGIEVDEETIVSSTGALSLKKGSVWGR---LGAEVTAIEFM 938
             +ILIATG    TP     PG  +     ++S G   L++  + GR   +GA   A+E  
Sbjct: 150  PHILIATGGMPSTPHESQIPGASLG----ITSDGFFQLEE--LPGRSVIVGAGYIAVEMA 203
Query: 939  NAIGGMG---------------IDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITV 983
              +  +G                D  ++      L   G++    ++V    K+   + V
Sbjct: 204  GILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEV 263
Query: 984  TIENV---KDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVI 1040
            ++      + P        D LL  +GR P T +L L ++GI+ D+KG + V+    T +
Sbjct: 264  SMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNV 323
Query: 1041 PNIFAIGD 1048
              I+A+GD
Sbjct: 324  KGIYAVGD 331

>pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With The Inhibitor Quinacrine Mustard Length = 492

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 100/234 (42%), Gaps = 31/234 (13%)
Query: 862  GHGKITGPNTVTVIKSDGSTEEVK----TKNILIATGS--EVTPFPGIEVDEETIVSSTG 915
            G G +   N V V +S      VK    T++IL+A+GS   +   PGIE      +SS  
Sbjct: 126  GWGSLESKNVVNVRESADPASAVKERLETEHILLASGSWPHMPNIPGIE----HCISSNE 181
Query: 916  ALSLKKGSVWG-RLGAEVTAIEFMNAIGGMGI-DGEVAKQFQRILGKQGMQFKLGTKVTG 973
            A  L +       +G    ++EF          DG+V   ++  +  +G    L  ++T 
Sbjct: 182  AFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTK 241
Query: 974  ASKSGDNITVTIENVKDPTKKE---------------ELSCDALLVCVGRRPYTHNLGLE 1018
               +     +T EN   P K E               ++  D +++ +GR P T +L L+
Sbjct: 242  QLTANGIQILTKEN---PAKVELNADGSKSVTFESGKKMDFDLVMMAIGRSPRTKDLQLQ 298
Query: 1019 EIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072
              G+   + G V V+   +T + NI+AIGD  +  ML   A +E    V+ + G
Sbjct: 299  NAGV-MIKNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAAALVDTVFG 351

>pdb|1GRG|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase As Derived From Refined Enzyme: Substrate Crystal Structures At 2 Angstroms Resolution Length = 478

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 100/248 (40%), Gaps = 35/248 (14%)
Query: 827  KLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKT 886
            K N   +   + A V  L     +    + +  + GH   T     T+   + S ++   
Sbjct: 93   KFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTI---EVSGKKYTA 149
Query: 887  KNILIATGS-EVTP----FPGIEVDEETIVSSTGALSLKKGSVWGR---LGAEVTAIEFM 938
             +ILIATG    TP     PG  +     ++S G   L++  + GR   +GA   A+E  
Sbjct: 150  PHILIATGGMPSTPHESQIPGASLG----ITSDGFFQLEE--LPGRSVIVGAGYIAVEMA 203
Query: 939  NAIGGMG---------------IDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITV 983
              +  +G                D  ++      L   G++    ++V    K+   + V
Sbjct: 204  GILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEV 263
Query: 984  TIENV---KDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVI 1040
            ++      + P        D LL  +GR P T +L L ++GI+ D+KG + V+    T +
Sbjct: 264  SMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNV 323
Query: 1041 PNIFAIGD 1048
              I+A+GD
Sbjct: 324  KGIYAVGD 331

>pdb|1GSN|A Chain A, Human Glutathione Reductase Modified By Dinitrosoglutathione Length = 478

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 100/248 (40%), Gaps = 35/248 (14%)
Query: 827  KLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKT 886
            K N   +   + A V  L     +    + +  + GH   T     T+   + S ++   
Sbjct: 93   KFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTI---EVSGKKYTA 149
Query: 887  KNILIATGS-EVTP----FPGIEVDEETIVSSTGALSLKKGSVWGR---LGAEVTAIEFM 938
             +ILIATG    TP     PG  +     ++S G   L++  + GR   +GA   A+E  
Sbjct: 150  PHILIATGGMPSTPHESQIPGASLG----ITSDGFFQLEE--LPGRSVIVGAGYIAVEMA 203
Query: 939  NAIGGMG---------------IDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITV 983
              +  +G                D  ++      L   G++    ++V    K+   + V
Sbjct: 204  GILSALGSKTSLMIRHDKVLRSFDSMISTNXTEELENAGVEVLKFSQVKEVKKTLSGLEV 263
Query: 984  TIENV---KDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVI 1040
            ++      + P        D LL  +GR P T +L L ++GI+ D+KG + V+    T +
Sbjct: 264  SMVTAVPGRLPVMTMIPDVDXLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNV 323
Query: 1041 PNIFAIGD 1048
              I+A+GD
Sbjct: 324  KGIYAVGD 331

>pdb|1DNC|A Chain A, Human Glutathione Reductase Modified By Diglutathione-Dinitroso-Iron Length = 478

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 100/248 (40%), Gaps = 35/248 (14%)
Query: 827  KLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKT 886
            K N   +   + A V  L     +    + +  + GH   T     T+   + S ++   
Sbjct: 93   KFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTI---EVSGKKYTA 149
Query: 887  KNILIATGS-EVTP----FPGIEVDEETIVSSTGALSLKKGSVWGR---LGAEVTAIEFM 938
             +ILIATG    TP     PG  +     ++S G   L++  + GR   +GA   A+E  
Sbjct: 150  PHILIATGGMPSTPHESQIPGASLG----ITSDGFFQLEE--LPGRSVIVGAGYIAVEMA 203
Query: 939  NAIGGMG---------------IDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITV 983
              +  +G                D  ++      L   G++    ++V    K+   + V
Sbjct: 204  GILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEV 263
Query: 984  TIENV---KDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVI 1040
            ++      + P        D LL  +GR P T +L L ++GI+ D+KG + V+    T +
Sbjct: 264  SMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNV 323
Query: 1041 PNIFAIGD 1048
              I+A+GD
Sbjct: 324  KGIYAVGD 331

>pdb|1XAN|A Chain A, Human Glutathione Reductase In Complex With A Xanthene Inhibitor Length = 461

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 100/248 (40%), Gaps = 35/248 (14%)
Query: 827  KLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKT 886
            K N   +   + A V  L     +    + +  + GH   T     T+   + S ++   
Sbjct: 76   KFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTI---EVSGKKYTA 132
Query: 887  KNILIATGS-EVTP----FPGIEVDEETIVSSTGALSLKKGSVWGR---LGAEVTAIEFM 938
             +ILIATG    TP     PG  +     ++S G   L++  + GR   +GA   A+E  
Sbjct: 133  PHILIATGGMPSTPHESQIPGASLG----ITSDGFFQLEE--LPGRSVIVGAGYIAVEMA 186
Query: 939  NAIGGMG---------------IDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITV 983
              +  +G                D  ++      L   G++    ++V    K+   + V
Sbjct: 187  GILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEV 246
Query: 984  TIENV---KDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVI 1040
            ++      + P        D LL  +GR P T +L L ++GI+ D+KG + V+    T +
Sbjct: 247  SMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNV 306
Query: 1041 PNIFAIGD 1048
              I+A+GD
Sbjct: 307  KGIYAVGD 314

>pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With Trypanothione, And The Structure- Based Discovery Of New Natural Product Inhibitors Length = 486

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 100/234 (42%), Gaps = 31/234 (13%)
Query: 862  GHGKITGPNTVTVIKSDGSTEEVK----TKNILIATGS--EVTPFPGIEVDEETIVSSTG 915
            G G +   N V V +S      VK    T++IL+A+GS   +   PGIE      +SS  
Sbjct: 125  GWGSLESKNVVNVRESADPASAVKERLETEHILLASGSWPHMPNIPGIE----HCISSNE 180
Query: 916  ALSLKKGSVWG-RLGAEVTAIEFMNAIGGMGI-DGEVAKQFQRILGKQGMQFKLGTKVTG 973
            A  L +       +G    ++EF          DG+V   ++  +  +G    L  ++T 
Sbjct: 181  AFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTK 240
Query: 974  ASKSGDNITVTIENVKDPTKKE---------------ELSCDALLVCVGRRPYTHNLGLE 1018
               +     +T EN   P K E               ++  D +++ +GR P T +L L+
Sbjct: 241  QLTANGIQILTKEN---PAKVELNADGSKSVTFESGKKMDFDLVMMAIGRSPRTKDLQLQ 297
Query: 1019 EIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072
              G+   + G V V+   +T + NI+AIGD  +  ML   A +E    V+ + G
Sbjct: 298  NAGV-MIKNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAAALVDTVFG 350

>pdb|1GRT|A Chain A, Human Glutathione Reductase A34eR37W MUTANT Length = 478

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 100/248 (40%), Gaps = 35/248 (14%)
Query: 827  KLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKT 886
            K N   +   + A V  L     +    + +  + GH   T     T+   + S ++   
Sbjct: 93   KFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTI---EVSGKKYTA 149
Query: 887  KNILIATGS-EVTP----FPGIEVDEETIVSSTGALSLKKGSVWGR---LGAEVTAIEFM 938
             +ILIATG    TP     PG  +     ++S G   L++  + GR   +GA   A+E  
Sbjct: 150  PHILIATGGMPSTPHESQIPGASLG----ITSDGFFQLEE--LPGRSVIVGAGYIAVEMA 203
Query: 939  NAIGGMG---------------IDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITV 983
              +  +G                D  ++      L   G++    ++V    K+   + V
Sbjct: 204  GILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEV 263
Query: 984  TIENV---KDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVI 1040
            ++      + P        D LL  +GR P T +L L ++GI+ D+KG + V+    T +
Sbjct: 264  SMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNV 323
Query: 1041 PNIFAIGD 1048
              I+A+GD
Sbjct: 324  KGIYAVGD 331

>pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine Nucleotide-Disulphide Oxidoreductase From Desulfovibrio Vulgaris Length = 472

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 992  TKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIH 1051
            T K  L  D +++  G  P T      + G+E D +G + V++R +T  P+IFA GDC+ 
Sbjct: 240  TDKRTLDADLVILAAGVSPNTQLA--RDAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVT 297
Query: 1052 GPML 1055
             P L
Sbjct: 298  IPNL 301

>pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form) Length = 485

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 100/234 (42%), Gaps = 31/234 (13%)
Query: 862  GHGKITGPNTVTVIKSDGSTEEVK----TKNILIATGS--EVTPFPGIEVDEETIVSSTG 915
            G G +   N V V +S      VK    T++IL+A+GS   +   PGIE      +SS  
Sbjct: 124  GWGSLESKNVVNVRESADPASAVKERLETEHILLASGSWPHMPNIPGIE----HCISSNE 179
Query: 916  ALSLKKGSVWG-RLGAEVTAIEFMNAIGGMGI-DGEVAKQFQRILGKQGMQFKLGTKVTG 973
            A  L +       +G    ++EF          DG+V   ++  +  +G    L  ++T 
Sbjct: 180  AFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTK 239
Query: 974  ASKSGDNITVTIENVKDPTKKE---------------ELSCDALLVCVGRRPYTHNLGLE 1018
               +     +T EN   P K E               ++  D +++ +GR P T +L L+
Sbjct: 240  QLTANGIQILTKEN---PAKVELNADGSKSVTFESGKKMDFDLVMMAIGRSPRTKDLQLQ 296
Query: 1019 EIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072
              G+   + G V V+   +T + NI+AIGD  +  ML   A +E    V+ + G
Sbjct: 297  NAGV-MIKNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAAALVDTVFG 349

>pdb|2GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized Glutathione Complex Length = 461

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 1000 DALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGD 1048
            D LL  +GR P T +L L ++GI+ D+KG + V+    T +  I+A+GD
Sbjct: 266  DCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGD 314

>pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase C531s Mutant Length = 565

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 90/218 (41%), Gaps = 55/218 (25%)
Query: 878  DGSTEEVKTKNILIATGSE--VTPFPGIE------------------------VDEETIV 911
            DGS  +     +L++ G+   V P PG++                        V+  T+V
Sbjct: 98   DGSEYQESYDTLLLSPGAAPIVPPIPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVV 157
Query: 912  SSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKV 971
               G + L+       LG + T +E  + +    +D E+A    + +  QG+  +LGT +
Sbjct: 158  GG-GFIGLEMMESLHHLGIKTTLLELADQVM-TPVDREMAGFAHQAIRDQGVDLRLGTAL 215
Query: 972  TGAS----------KSGDN---------ITVTIENVKDPTKKEELSCDALLVCVGRRPYT 1012
            +  S           +G++         +++T+ N       E L  D L++ +G RP T
Sbjct: 216  SEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSN------GELLETDLLIMAIGVRPET 269
Query: 1013 HNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCI 1050
                  + G+   E G + VN+  QT  P I+A+GD +
Sbjct: 270  QLA--RDAGLAIGELGGIKVNAMMQTSDPAIYAVGDAV 305

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1074
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	1e-128
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	1e-46
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	1e-38
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	1e-127
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	1e-45
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	2e-35
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	1e-126
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	2e-46
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	5e-34
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	1e-125
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	4e-46
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	1e-35
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	1e-124
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	4e-46
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	5e-35
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	1e-123
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	2e-46
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	3e-35
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	1e-122
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	4e-46
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	1e-35
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	1e-118
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	2e-45
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	4e-32
1ojt_A	482	Surface protein; redox-active center, glycolysis,	1e-118
1ojt_A	482	Surface protein; redox-active center, glycolysis,	1e-45
1ojt_A	482	Surface protein; redox-active center, glycolysis,	2e-35
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	1e-118
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	1e-45
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	4e-34
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	1e-116
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	1e-42
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	2e-29
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	1e-107
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	3e-45
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	1e-34
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	1e-106
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	6e-45
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	4e-31
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	1e-105
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	6e-40
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	8e-27
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	1e-101
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	3e-42
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	4e-28
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	2e-96
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	2e-34
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	1e-25
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	4e-96
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	2e-40
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	5e-24
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	3e-71
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	6e-27
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	2e-23
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	5e-64
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	2e-17
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	4e-14
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	2e-60
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	1e-16
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	6e-14
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	8e-59
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	2e-15
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	9e-15
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	5e-58
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	2e-18
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	2e-13
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	4e-54
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	1e-19
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	2e-12
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	7e-52
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	3e-17
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	9e-11
1fec_A	490	Trypanothione reductase; redox-active center, oxid	1e-50
1fec_A	490	Trypanothione reductase; redox-active center, oxid	2e-16
1fec_A	490	Trypanothione reductase; redox-active center, oxid	2e-12
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	3e-50
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	1e-17
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	1e-13
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	2e-49
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	1e-16
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	2e-13
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	4e-49
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	2e-16
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	6e-12
4dna_A	463	Probable glutathione reductase; structural genomic	1e-48
4dna_A	463	Probable glutathione reductase; structural genomic	4e-18
4dna_A	463	Probable glutathione reductase; structural genomic	3e-13
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	1e-45
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	7e-17
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	1e-12
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	1e-19
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	6e-19
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	7e-19
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	9e-19
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	2e-18
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	2e-18
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	3e-18
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	3e-18
1yqz_A	438	Coenzyme A disulfide reductase; oxidoreductase; HE	2e-17
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	2e-16
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	1e-15
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	2e-14
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	6e-14
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	4e-13
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	2e-12
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	8e-12
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	1e-11
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	3e-11
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	5e-11
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	7e-11
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	2e-10
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	2e-10
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	2e-09
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	3e-08
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	8e-08
4fk1_A	304	Putative thioredoxin reductase; structural genomic	2e-07
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	6e-07
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	4e-06
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	5e-06
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	6e-06
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	1e-05
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	4e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	5e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	5e-04
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	5e-05
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	6e-05
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	6e-05
3r9u_A	315	Thioredoxin reductase; structural genomics, center	1e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-04
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	2e-04
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	6e-04
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	7e-04
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	8e-04

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* Length = 474

 Score =  398 bits (1024), Expect = e-128
 Identities = 174/269 (64%), Positives = 205/269 (76%), Gaps = 19/269 (7%)

Query: 824  KGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEE 883
              V+LNL+ MM  KS AVKALTGGIAHLFK NKV  +NG+GKITG N VT  K+DG T+ 
Sbjct: 79   SEVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQV 138

Query: 884  VKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK-----------------GSVWG 926
            + TKNILIATGSEVTPFPGI +DE+TIVSSTGALSLKK                 GSVW 
Sbjct: 139  IDTKNILIATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQ 198

Query: 927  RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGD-NITVTI 985
            RLGA+VTA+EF+  +GG+GID E++K FQRIL KQG +FKL TKVTGA+K  D  I V+I
Sbjct: 199  RLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSI 258

Query: 986  ENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFA 1045
            E      K E ++CD LLVC+GRRP+T NLGLEE+GIE D +GR+PVN+RFQT IPNI+A
Sbjct: 259  EAASGG-KAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYA 317

Query: 1046 IGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
            IGD + GPMLAHKAEDEGI+CVEG+AG  
Sbjct: 318  IGDVVAGPMLAHKAEDEGIICVEGMAGGA 346

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* Length = 474

 Score =  173 bits (441), Expect = 1e-46
 Identities = 62/78 (79%), Positives = 70/78 (89%)

Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
           GIEYKVGKFPFAANSRAKTN DTDG VK+LG K TD+VLG HI+GP AGE++NEA LA+E
Sbjct: 378 GIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALALE 437

Query: 512 YGASCEDVARTCHAHPTV 529
           YGASCED+AR CHAHPT+
Sbjct: 438 YGASCEDIARVCHAHPTL 455

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* Length = 474

 Score =  149 bits (380), Expect = 1e-38
 Identities = 63/80 (78%), Positives = 69/80 (86%)

Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGT 587
           TVC+EKN+TLGGTCLNVGCIPSKALLNNSHYYHMAH  D  +RGIE+  V+LNL+ MM  
Sbjct: 32  TVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSEVRLNLDKMMEQ 91

Query: 588 KSAAVKALTGGIAHLFKSNK 607
           KS AVKALTGGIAHLFK NK
Sbjct: 92  KSTAVKALTGGIAHLFKQNK 111

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 470

 Score =  396 bits (1020), Expect = e-127
 Identities = 130/284 (45%), Positives = 174/284 (61%), Gaps = 21/284 (7%)

Query: 810  NYHLATKLFTQAG--DKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKIT 867
             YH A   F   G     V+++L  MMG K  AV  LT GI  LFK NKVT + G+GK  
Sbjct: 62   MYHEAKHSFANHGVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFV 121

Query: 868  GPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK------ 921
             P+ ++V   +G    VK K+I+IATGS+V   PG+ +DE+ IVSSTGAL+L +      
Sbjct: 122  SPSEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVTIDEKKIVSSTGALALSEIPKKLV 181

Query: 922  -----------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTK 970
                       GSVWGR+G+EVT +EF + I    +D E+ KQFQR L KQGM+FKL TK
Sbjct: 182  VIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP-TMDAEIRKQFQRSLEKQGMKFKLKTK 240

Query: 971  VTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRV 1030
            V G   SGD + +T+E      ++  +  D +LV  GR P+T  L L++IG+E D+ GR+
Sbjct: 241  VVGVDTSGDGVKLTVEPSAGG-EQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRI 299

Query: 1031 PVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
             VN RF T +  ++AIGD I GPMLAHKAE++G+ CVE +AG  
Sbjct: 300  LVNERFSTNVSGVYAIGDVIPGPMLAHKAEEDGVACVEYLAGKV 343

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 470

 Score =  170 bits (434), Expect = 1e-45
 Identities = 49/78 (62%), Positives = 65/78 (83%)

Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
           G+EY+VGKFPF ANSRAK  ++ +G VK++ +K TDK+LGVHI+ P AGELI+EA +A++
Sbjct: 375 GVEYRVGKFPFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIMAPNAGELIHEAAIALQ 434

Query: 512 YGASCEDVARTCHAHPTV 529
           Y AS ED+AR CHAHPT+
Sbjct: 435 YDASSEDIARVCHAHPTM 452

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 470

 Score =  140 bits (355), Expect = 2e-35
 Identities = 45/80 (56%), Positives = 53/80 (66%), Gaps = 1/80 (1%)

Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGT 587
           T C+EK   LGGTCLNVGCIPSKALL++SH YH A        G++V  V+++L  MMG 
Sbjct: 32  TTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKH-SFANHGVKVSNVEIDLAAMMGQ 90

Query: 588 KSAAVKALTGGIAHLFKSNK 607
           K  AV  LT GI  LFK NK
Sbjct: 91  KDKAVSNLTRGIEGLFKKNK 110

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* Length = 476

 Score =  393 bits (1013), Expect = e-126
 Identities = 109/284 (38%), Positives = 160/284 (56%), Gaps = 23/284 (8%)

Query: 810  NYHLATKLFTQAG--DKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKIT 867
             +H A + F   G     V +++ TM+  K   V+ LTGG+A L K+N VT   GHGK+ 
Sbjct: 65   KFHEAHESFKLHGISTGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLL 124

Query: 868  GPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK------ 921
                V V  +DGS++ + T+N+++A+GS+    P   VD++ IV STGAL  +       
Sbjct: 125  AGKKVEVTAADGSSQVLDTENVILASGSKPVEIPPAPVDQDVIVDSTGALDFQNVPGKLG 184

Query: 922  -----------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTK 970
                       GSVW RLGAEVT +E M+      +D +VAK+ Q+IL KQG++  LG +
Sbjct: 185  VIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP-AVDEQVAKEAQKILTKQGLKILLGAR 243

Query: 971  VTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRV 1030
            VTG       +TV   + +    ++  + D L+V VGRRP T +L   + G+  DE+G +
Sbjct: 244  VTGTEVKNKQVTVKFVDAE---GEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFI 300

Query: 1031 PVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
             V+    T +P ++AIGD + G MLAHKA +EG+V  E IAG K
Sbjct: 301  YVDDYCATSVPGVYAIGDVVRGAMLAHKASEEGVVVAERIAGHK 344

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* Length = 476

 Score =  173 bits (440), Expect = 2e-46
 Identities = 42/78 (53%), Positives = 54/78 (69%)

Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
           G+   VG FPFAA+ RA   NDT GFVKV+ D  TD+VLGVH+IGP+A EL+ +  +AME
Sbjct: 376 GVAINVGVFPFAASGRAMAANDTAGFVKVIADAKTDRVLGVHVIGPSAAELVQQGAIAME 435

Query: 512 YGASCEDVARTCHAHPTV 529
           +G S ED+     AHP +
Sbjct: 436 FGTSAEDLGMMVFAHPAL 453

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* Length = 476

 Score =  136 bits (345), Expect = 5e-34
 Identities = 40/86 (46%), Positives = 52/86 (60%), Gaps = 7/86 (8%)

Query: 528 TVCVEK------NDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNL 581
           T  +EK         LGGTCLNVGCIPSKALL++S+ +H AH    K  GI    V +++
Sbjct: 29  TALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHE-SFKLHGISTGEVAIDV 87

Query: 582 ETMMGTKSAAVKALTGGIAHLFKSNK 607
            TM+  K   V+ LTGG+A L K+N 
Sbjct: 88  PTMIARKDQIVRNLTGGVASLIKANG 113

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} Length = 491

 Score =  391 bits (1007), Expect = e-125
 Identities = 135/286 (47%), Positives = 174/286 (60%), Gaps = 23/286 (8%)

Query: 810  NYHLATKLFTQAG--DKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKIT 867
             +H A       G      KLNL+ MM  K A VK+   G++ LFK NK+    G GK+ 
Sbjct: 81   MFHQAQHGLEALGVEVANPKLNLQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKVL 140

Query: 868  GPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEV--DEETIVSSTGALSLKK---- 921
            G   V+V    G  + ++ KN++IATGS+V   PG+EV  DE+TIVSSTGAL+L+K    
Sbjct: 141  GQGKVSVTNEKGEEQVLEAKNVVIATGSDVAGIPGVEVAFDEKTIVSSTGALALEKVPAS 200

Query: 922  -------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLG 968
                         GSVW RLGA+VT +EF++ I G G+DGEVAKQ QR+L KQG+ FKLG
Sbjct: 201  MIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILG-GMDGEVAKQLQRMLTKQGIDFKLG 259

Query: 969  TKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKG 1028
             KVTGA KSGD   VT E VK   +   L  + +L+  GR+P T  LGL + G+  D +G
Sbjct: 260  AKVTGAVKSGDGAKVTFEPVKGG-EATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRG 318

Query: 1029 RVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
            RV ++  FQT I  ++AIGD + GPMLAHKAEDEG+   E IAG  
Sbjct: 319  RVEIDRHFQTSIAGVYAIGDVVRGPMLAHKAEDEGVAVAEIIAGQA 364

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} Length = 491

 Score =  172 bits (439), Expect = 4e-46
 Identities = 49/78 (62%), Positives = 60/78 (76%)

Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
           G+ YK+GKFPF AN RA+    TDGFVK+L DK TD+VLG HIIG  AGE+I+E  + ME
Sbjct: 396 GVAYKIGKFPFTANGRARAMLQTDGFVKILADKETDRVLGGHIIGFGAGEMIHEIAVLME 455

Query: 512 YGASCEDVARTCHAHPTV 529
           +G S ED+ RTCHAHPT+
Sbjct: 456 FGGSSEDLGRTCHAHPTM 473

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} Length = 491

 Score =  141 bits (358), Expect = 1e-35
 Identities = 43/80 (53%), Positives = 52/80 (65%), Gaps = 1/80 (1%)

Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGT 587
              VEK  T GGTCLNVGCIPSKALL+ S  +H A    ++A G+EV   KLNL+ MM  
Sbjct: 51  VAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQH-GLEALGVEVANPKLNLQKMMAH 109

Query: 588 KSAAVKALTGGIAHLFKSNK 607
           K A VK+   G++ LFK NK
Sbjct: 110 KDATVKSNVDGVSFLFKKNK 129

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} Length = 468

 Score =  387 bits (997), Expect = e-124
 Identities = 119/287 (41%), Positives = 167/287 (58%), Gaps = 25/287 (8%)

Query: 810  NYHLATKLFTQAG---DKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKI 866
             YH A   F + G    +GV ++   M   K  AVK LTGG+ +LFK NKVT   G G  
Sbjct: 58   LYHDAHANFARYGLMGGEGVTMDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSF 117

Query: 867  TGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK----- 921
               +++ V   DG  E ++TK  +IATGSE T  P +  DE+ ++SSTGAL+L +     
Sbjct: 118  ETAHSIRVNGLDGKQEMLETKKTIIATGSEPTELPFLPFDEKVVLSSTGALALPRVPKTM 177

Query: 922  ------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGK-QGMQFKLG 968
                        GSVW RLGAEVT +EF        +D +V       L K + M+F   
Sbjct: 178  VVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAP-TLDEDVTNALVGALAKNEKMKFMTS 236

Query: 969  TKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKG 1028
            TKV G + +GD++++ +E      K+E ++C+ALLV VGRRP+T  LGL++I + K+E+G
Sbjct: 237  TKVVGGTNNGDSVSLEVEGKNG--KRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERG 294

Query: 1029 RVPVNSRFQTVIPNIFAIGDCI-HGPMLAHKAEDEGIVCVEGIAGDK 1074
             V +   F+T IP+++AIGD +  GPMLAHKAEDEG+ C E +AG  
Sbjct: 295  FVKIGDHFETSIPDVYAIGDVVDKGPMLAHKAEDEGVACAEILAGKP 341

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} Length = 468

 Score =  171 bits (437), Expect = 4e-46
 Identities = 57/78 (73%), Positives = 63/78 (80%)

Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
           G+ YKVGKFPF ANSRAK  +  DGFVKVL DK TD++LGVHI+   AGELI EA LAME
Sbjct: 373 GVAYKVGKFPFNANSRAKAVSTEDGFVKVLVDKATDRILGVHIVCTTAGELIGEACLAME 432

Query: 512 YGASCEDVARTCHAHPTV 529
           YGAS EDV RTCHAHPT+
Sbjct: 433 YGASSEDVGRTCHAHPTM 450

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} Length = 468

 Score =  139 bits (352), Expect = 5e-35
 Identities = 45/81 (55%), Positives = 54/81 (66%), Gaps = 2/81 (2%)

Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEV-EGVKLNLETMMG 586
           T CVEK   LGGTCLNVGCIPSKALL+ +H YH AH+ +    G+   EGV ++   M  
Sbjct: 28  TACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHA-NFARYGLMGGEGVTMDSAKMQQ 86

Query: 587 TKSAAVKALTGGIAHLFKSNK 607
            K  AVK LTGG+ +LFK NK
Sbjct: 87  QKERAVKGLTGGVEYLFKKNK 107

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* Length = 478

 Score =  384 bits (989), Expect = e-123
 Identities = 129/292 (44%), Positives = 166/292 (56%), Gaps = 28/292 (9%)

Query: 810  NYHLATKLFTQAG---DKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKI 866
             +H       + G   +  +K+N+      K  AVK LTGGI  LFK NKVT   G+G  
Sbjct: 61   LFHQMHTEAQKRGIDVNGDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSF 120

Query: 867  TGPNTVTVIKSDGS------TEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLK 920
                 + V   DG          +  KNI++ATGSEVTPFPGIE+DEE IVSSTGALSLK
Sbjct: 121  EDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFPGIEIDEEKIVSSTGALSLK 180

Query: 921  K-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGM 963
            +                 GSV+ RLG++VT +EF   IG   +DGEVAK  Q+ L KQG+
Sbjct: 181  EIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA-SMDGEVAKATQKFLKKQGL 239

Query: 964  QFKLGTKVTGASKSGDNITVTIENVKDPT-KKEELSCDALLVCVGRRPYTHNLGLEEIGI 1022
             FKL TKV  A ++ D   V I      T K+E L  + LLV VGRRPY   LG E+IG+
Sbjct: 240  DFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGL 299

Query: 1023 EKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
            E D++GR+ ++ +F +  P+I  +GD   GPMLAHKAE+EGI  VE +    
Sbjct: 300  EVDKRGRLVIDDQFNSKFPHIKVVGDVTFGPMLAHKAEEEGIAAVEMLKTGH 351

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* Length = 478

 Score =  173 bits (440), Expect = 2e-46
 Identities = 58/78 (74%), Positives = 68/78 (87%)

Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
           GI+YK+GKFPFAANSRAKTN DT+GFVK+L D  T+++LG HIIGP AGE+I EA LA+E
Sbjct: 383 GIDYKIGKFPFAANSRAKTNQDTEGFVKILIDSKTERILGAHIIGPNAGEMIAEAGLALE 442

Query: 512 YGASCEDVARTCHAHPTV 529
           YGAS EDVAR CHAHPT+
Sbjct: 443 YGASAEDVARVCHAHPTL 460

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* Length = 478

 Score =  139 bits (354), Expect = 3e-35
 Identities = 49/81 (60%), Positives = 57/81 (70%), Gaps = 2/81 (2%)

Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEG-VKLNLETMMG 586
           T CVEK   LGGTCLNVGCIPSKALLNNSH +H  H+ + + RGI+V G +K+N+     
Sbjct: 31  TACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHT-EAQKRGIDVNGDIKINVANFQK 89

Query: 587 TKSAAVKALTGGIAHLFKSNK 607
            K  AVK LTGGI  LFK NK
Sbjct: 90  AKDDAVKQLTGGIELLFKKNK 110

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Length = 455

 Score =  382 bits (984), Expect = e-122
 Identities = 106/282 (37%), Positives = 148/282 (52%), Gaps = 27/282 (9%)

Query: 810  NYHLATKLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGP 869
              + A K    A  KGV+L+L  +M  K   V+A T G+  LFK N + +  G  +    
Sbjct: 57   RIYEAKKGLLGAKVKGVELDLPALMAHKDKVVQANTQGVEFLFKKNGIARHQGTARFLSE 116

Query: 870  NTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK-------- 921
              V V   + + EE++ + ILIATGS     P  +VD E +V+ST ALS  +        
Sbjct: 117  RKVLV---EETGEELEARYILIATGSAPLIPPWAQVDYERVVTSTEALSFPEVPKRLIVV 173

Query: 922  ---------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVT 972
                     G VW RLGAEV  +E+M+ I    +D EV++  +R+  KQG+  + G +VT
Sbjct: 174  GGGVIGLELGVVWHRLGAEVIVLEYMDRILP-TMDLEVSRAAERVFKKQGLTIRTGVRVT 232

Query: 973  GASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPV 1032
                      V +E        E L  D +LV VGRRPYT  L LE  G+  DE+GR+PV
Sbjct: 233  AVVPEAKGARVELEG------GEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPV 286

Query: 1033 NSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
            +   +T +P+I+AIGD + GPMLAHKA +EGI  VE +    
Sbjct: 287  DEHLRTRVPHIYAIGDVVRGPMLAHKASEEGIAAVEHMVRGF 328

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Length = 455

 Score =  171 bits (436), Expect = 4e-46
 Identities = 40/78 (51%), Positives = 57/78 (73%)

Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
           GI YKVGKFP++A+ RA+   +T+GF+KVL    TD++LGVH IG   G+++ EA LA+ 
Sbjct: 360 GIPYKVGKFPYSASGRARAMGETEGFIKVLAHAKTDRILGVHGIGARVGDVLAEAALALF 419

Query: 512 YGASCEDVARTCHAHPTV 529
           + AS ED+ R  HAHP++
Sbjct: 420 FKASAEDLGRAPHAHPSL 437

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Length = 455

 Score =  140 bits (356), Expect = 1e-35
 Identities = 37/80 (46%), Positives = 47/80 (58%), Gaps = 3/80 (3%)

Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGT 587
              VEK   LGGTCL VGCIPSKALL  +   + A  G +   G +V+GV+L+L  +M  
Sbjct: 27  VGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKKGLL---GAKVKGVELDLPALMAH 83

Query: 588 KSAAVKALTGGIAHLFKSNK 607
           K   V+A T G+  LFK N 
Sbjct: 84  KDKVVQANTQGVEFLFKKNG 103

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* Length = 464

 Score =  371 bits (955), Expect = e-118
 Identities = 101/284 (35%), Positives = 146/284 (51%), Gaps = 28/284 (9%)

Query: 810  NYHLATKLFTQAGDKG-VKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITG 868
              H   K+    G K   +L+L+ + G +   VK LTGG+  L K N V  L G  ++ G
Sbjct: 61   TLHHL-KVAEGFGLKAKPELDLKKLGGWRDQVVKKLTGGVGTLLKGNGVELLRGFARLVG 119

Query: 869  PNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK------- 921
            P  V V       E    K++++ATGSE     G    E+ +  ST AL +++       
Sbjct: 120  PKEVEV-----GGERYGAKSLILATGSEPLELKGFPFGED-VWDSTRALKVEEGLPKRLL 173

Query: 922  -----------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTK 970
                       G V+ RLGAEVT IE+M  I     D E A   +R L K+G++ +  TK
Sbjct: 174  VIGGGAVGLELGQVYRRLGAEVTLIEYMPEILP-QGDPETAALLRRALEKEGIRVRTKTK 232

Query: 971  VTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRV 1030
              G  K  D + V +E  +   + EE+  D +LV VGR+P T  LGLE+ G++ DE+G +
Sbjct: 233  AVGYEKKKDGLHVRLEPAEGG-EGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFI 291

Query: 1031 PVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
             VN+R +T +P ++AIGD    P+LAHKA  EG++  E  AG  
Sbjct: 292  RVNARMETSVPGVYAIGDAARPPLLAHKAMREGLIAAENAAGKD 335

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* Length = 464

 Score =  170 bits (432), Expect = 2e-45
 Identities = 45/77 (58%), Positives = 55/77 (71%)

Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
           G + KVGKFP AA+ RA T    +G VKV+GD+ TD +LGV I+GP AGELI EA LA+E
Sbjct: 366 GYKVKVGKFPLAASGRALTLGGAEGMVKVVGDEETDLLLGVFIVGPQAGELIAEAALALE 425

Query: 512 YGASCEDVARTCHAHPT 528
            GA+  D+A T H HPT
Sbjct: 426 MGATLTDLALTVHPHPT 442

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* Length = 464

 Score =  130 bits (329), Expect = 4e-32
 Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 4/80 (5%)

Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGT 587
            + VE    +GG CLNVGCIP+KALL+ +   H       +  G++ +  +L+L+ + G 
Sbjct: 32  VLAVEA-GEVGGVCLNVGCIPTKALLHAAETLHHLK--VAEGFGLKAK-PELDLKKLGGW 87

Query: 588 KSAAVKALTGGIAHLFKSNK 607
           +   VK LTGG+  L K N 
Sbjct: 88  RDQVVKKLTGGVGTLLKGNG 107

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* Length = 482

 Score =  372 bits (957), Expect = e-118
 Identities = 87/278 (31%), Positives = 132/278 (47%), Gaps = 31/278 (11%)

Query: 824  KGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTV--------- 874
               +L+++ +   K   V  LTGG+A + KS KV  + G G+   P+ + V         
Sbjct: 77   PEPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYE 136

Query: 875  -IKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK------------ 921
                 G  + V  KN +IA GS VT  P I  D   I+ S+GAL+LK+            
Sbjct: 137  QAAPTGEKKIVAFKNCIIAAGSRVTKLPFIPEDPR-IIDSSGALALKEVPGKLLIIGGGI 195

Query: 922  -----GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASK 976
                 G+V+  LG+ +  +E M+ +   G D ++ K +Q+    +     + TK      
Sbjct: 196  IGLEMGTVYSTLGSRLDVVEMMDGLMQ-GADRDLVKVWQKQNEYRFDNIMVNTKTVAVEP 254

Query: 977  SGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRF 1036
              D + VT E    P  KE    DA+LV  GR P    +  E+ G+   ++G + V+ + 
Sbjct: 255  KEDGVYVTFEGANAP--KEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQM 312

Query: 1037 QTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
            +T +P+I+AIGD +  PMLAHKA  EG V  E  AG K
Sbjct: 313  RTNVPHIYAIGDIVGQPMLAHKAVHEGHVAAENCAGHK 350

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* Length = 482

 Score =  170 bits (434), Expect = 1e-45
 Identities = 28/77 (36%), Positives = 42/77 (54%)

Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
             +     FP+AA+ RA  N     F K++ D  T +++G  I+GP  G++I E  LA+E
Sbjct: 382 ARKITKANFPWAASGRAIANGCDKPFTKLIFDAETGRIIGGGIVGPNGGDMIGEVCLAIE 441

Query: 512 YGASCEDVARTCHAHPT 528
            G    D+ +T H HPT
Sbjct: 442 MGCDAADIGKTIHPHPT 458

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* Length = 482

 Score =  140 bits (356), Expect = 2e-35
 Identities = 34/80 (42%), Positives = 46/80 (57%), Gaps = 2/80 (2%)

Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGT 587
              VE+  TLGG CLNVGCIPSKALL+N+          + A GI+    +L+++ +   
Sbjct: 32  VAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVR--HLAANGIKYPEPELDIDMLRAY 89

Query: 588 KSAAVKALTGGIAHLFKSNK 607
           K   V  LTGG+A + KS K
Sbjct: 90  KDGVVSRLTGGLAGMAKSRK 109

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 455

 Score =  370 bits (952), Expect = e-118
 Identities = 93/268 (34%), Positives = 135/268 (50%), Gaps = 23/268 (8%)

Query: 824  KGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEE 883
            + V ++   +   K++ VK LTGG+  L K NKV  + G       NTV V+  D   + 
Sbjct: 73   ENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDS-AQT 131

Query: 884  VKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK-----------------GSVWG 926
               KN +IATGS     P  +     I+ STGAL+L +                 G+ + 
Sbjct: 132  YTFKNAIIATGSRPIELPNFKFSNR-ILDSTGALNLGEVPKSLVVIGGGYIGIELGTAYA 190

Query: 927  RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIE 986
              G +VT +E    I   G + ++A   ++ L K+G++        GA +  D +TVT E
Sbjct: 191  NFGTKVTILEGAGEILS-GFEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYE 249

Query: 987  NVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAI 1046
                  + + +  D +LV VGRRP T  LGLE+IGI+   +G + V+ + +T +PNIFAI
Sbjct: 250  ANG---ETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNIFAI 306

Query: 1047 GDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
            GD + GP LAHKA  EG V  E IAG  
Sbjct: 307  GDIVPGPALAHKASYEGKVAAEAIAGHP 334

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 455

 Score =  169 bits (432), Expect = 1e-45
 Identities = 40/77 (51%), Positives = 51/77 (66%)

Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
           GI+    KFPFAAN RA   NDTDGF+K++  K    ++G  IIGP A ++I E  LA+E
Sbjct: 366 GIDVIAAKFPFAANGRALALNDTDGFLKLVVRKEDGVIIGAQIIGPNASDMIAELGLAIE 425

Query: 512 YGASCEDVARTCHAHPT 528
            G + ED+A T HAHPT
Sbjct: 426 AGMTAEDIALTIHAHPT 442

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 455

 Score =  136 bits (344), Expect = 4e-34
 Identities = 37/80 (46%), Positives = 47/80 (58%), Gaps = 3/80 (3%)

Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGT 587
              VEK   LGG CLNVGCIPSKAL++ SH Y  A     +  GI+ E V ++   +   
Sbjct: 29  VTIVEK-GNLGGVCLNVGCIPSKALISASHRYEQAK--HSEEMGIKAENVTIDFAKVQEW 85

Query: 588 KSAAVKALTGGIAHLFKSNK 607
           K++ VK LTGG+  L K NK
Sbjct: 86  KASVVKKLTGGVEGLLKGNK 105

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* Length = 464

 Score =  367 bits (944), Expect = e-116
 Identities = 76/282 (26%), Positives = 124/282 (43%), Gaps = 23/282 (8%)

Query: 811  YHLATKLFTQAGDKG-VKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGP 869
             H+ TK     G  G V  +            +    G+  L K NK+T+++G+G     
Sbjct: 59   VHIFTKDAKAFGISGEVTFDYGIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFADA 118

Query: 870  NTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK-------- 921
            NT+ V  +DG TE V   N +IATGS     PG  +    +V+    +  ++        
Sbjct: 119  NTLLVDLNDGGTESVTFDNAIIATGSSTRLVPGTSLSAN-VVTYEEQILSRELPKSIIIA 177

Query: 922  ---------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVT 972
                     G V    G +VT +EF+        D +V+K+ ++   K G+     TKV 
Sbjct: 178  GAGAIGMEFGYVLKNYGVDVTIVEFLPRALP-NEDADVSKEIEKQFKKLGVTILTATKVE 236

Query: 973  GASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPV 1032
              +  G  +TVT+         +EL  + +L  +G  P     GL++ G+   ++  + V
Sbjct: 237  SIADGGSQVTVTVTKDG---VAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGV 293

Query: 1033 NSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
            +   +T + +I+AIGD      LAH AE +G+V  E IAG +
Sbjct: 294  DDYMRTNVGHIYAIGDVNGLLQLAHVAEAQGVVAAETIAGAE 335

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* Length = 464

 Score =  161 bits (410), Expect = 1e-42
 Identities = 30/77 (38%), Positives = 44/77 (57%)

Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
           G +  V KFPF AN++A    D  GFVK++ D    ++LG H++G    EL+ E  LA  
Sbjct: 369 GYDVVVAKFPFTANAKAHGVGDPSGFVKLVADAKHGELLGGHLVGHDVAELLPELTLAQR 428

Query: 512 YGASCEDVARTCHAHPT 528
           +  +  ++AR  H HPT
Sbjct: 429 WDLTASELARNVHTHPT 445

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* Length = 464

 Score =  122 bits (308), Expect = 2e-29
 Identities = 32/80 (40%), Positives = 37/80 (46%), Gaps = 3/80 (3%)

Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGT 587
           T  VE     GG CLNVGCIPSKALL N+   H+    D KA GI  E V  +       
Sbjct: 29  TAIVEP-KYWGGVCLNVGCIPSKALLRNAELVHIFTK-DAKAFGISGE-VTFDYGIAYDR 85

Query: 588 KSAAVKALTGGIAHLFKSNK 607
                +    G+  L K NK
Sbjct: 86  SRKVAEGRVAGVHFLMKKNK 105

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 458

 Score =  342 bits (881), Expect = e-107
 Identities = 75/286 (26%), Positives = 124/286 (43%), Gaps = 35/286 (12%)

Query: 810  NYHLATKLFTQAGD----KGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGK 865
             +H A++    +         +L++   +  K   V  LT G+A L K + V  ++G  K
Sbjct: 60   QFHQASRFTEPSPLGISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAK 119

Query: 866  ITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK---- 921
            +     V V       + ++ +++L+ATGS     P + +    ++SST AL+ K     
Sbjct: 120  VLDGKQVEV-----DGQRIQCEHLLLATGSSSVELPMLPLGGP-VISSTEALAPKALPQH 173

Query: 922  -------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLG 968
                         G  + +LGA+V+ +E    I     D E+       L K G+   LG
Sbjct: 174  LVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP-TYDSELTAPVAESLKKLGIALHLG 232

Query: 969  TKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKG 1028
              V G         +  +       +  L  D +LV VGRRP T    LE + ++ +   
Sbjct: 233  HSVEGYENG---CLLANDGKG---GQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGAA 286

Query: 1029 RVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
             + ++ R QT + N++AIGD    PMLAH+A  +G +  E IAG  
Sbjct: 287  -IAIDERCQTSMHNVWAIGDVAGEPMLAHRAMAQGEMVAEIIAGKA 331

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 458

 Score =  168 bits (429), Expect = 3e-45
 Identities = 33/77 (42%), Positives = 44/77 (57%)

Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
           G++  V +FPFAAN RA +     GFV+V+  +    +LG   +G A  EL      ++E
Sbjct: 363 GLDCIVAQFPFAANGRAMSLESKSGFVRVVARRDNHLILGWQAVGVAVSELSTAFAQSLE 422

Query: 512 YGASCEDVARTCHAHPT 528
            GA  EDVA T HAHPT
Sbjct: 423 MGACLEDVAGTIHAHPT 439

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 458

 Score =  137 bits (348), Expect = 1e-34
 Identities = 33/81 (40%), Positives = 45/81 (55%), Gaps = 2/81 (2%)

Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMA-HSGDMKARGIEVEGVKLNLETMMG 586
           TV VE    LGGTCLN+GCIPSKAL++ +  +H A    +    GI V   +L++   + 
Sbjct: 31  TVLVEG-QALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRLDIGQSVA 89

Query: 587 TKSAAVKALTGGIAHLFKSNK 607
            K   V  LT G+A L K + 
Sbjct: 90  WKDGIVDRLTTGVAALLKKHG 110

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} Length = 466

 Score =  338 bits (869), Expect = e-106
 Identities = 60/284 (21%), Positives = 108/284 (38%), Gaps = 29/284 (10%)

Query: 814  ATKLFTQA---GDKGVKLNLETMMGTKSAAVKA-LTGGIAHLFKSNKVTQLNGHGKITGP 869
              +   +     +  + L+  T+   K    +        ++ +   +T   G+ KI  P
Sbjct: 57   VIQTAWRLTNIANVKIPLDFSTVQDRKDYVQELRFKQHKRNMSQYETLTFYKGYVKIKDP 116

Query: 870  NTVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVDEETIVSSTGALSLKK------ 921
              V V   +G   E +T+ ++IA+G+E      PG+E    +        S +K      
Sbjct: 117  THVIVKTDEGKEIEAETRYMIIASGAETAKLRLPGVEYCLTSDDIFGYKTSFRKLPQDMV 176

Query: 922  -----------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTK 970
                        S++  +G +   IE ++       D ++      IL    +  K  + 
Sbjct: 177  IIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSIL---KLNIKFNSP 233

Query: 971  VTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRV 1030
            VT   K  D+    I + KD   K+ +  +++++  GRRP     G  EIG+   + G +
Sbjct: 234  VTEVKKIKDDEYEVIYSTKDG-SKKSIFTNSVVLAAGRRPVIPE-GAREIGLSISKTG-I 290

Query: 1031 PVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
             V+   +T IPN+FA GD        H A    I     I  + 
Sbjct: 291  VVDETMKTNIPNVFATGDANGLAPYYHAAVRMSIAAANNIMANG 334

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} Length = 466

 Score =  168 bits (428), Expect = 6e-45
 Identities = 20/77 (25%), Positives = 41/77 (53%)

Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
           GIE    ++    +  A+     +G +K++ ++ + +++G  +IG  +  LINE  LA+ 
Sbjct: 369 GIEIVEAEYNMEEDVSAQIYGQKEGVLKLIFERGSMRLIGAWMIGVHSQYLINELGLAVA 428

Query: 512 YGASCEDVARTCHAHPT 528
           YG + + +A     HP+
Sbjct: 429 YGLNAKQLASFAEQHPS 445

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} Length = 466

 Score =  127 bits (321), Expect = 4e-31
 Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 8/81 (9%)

Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGT 587
            +  +    LGG CL  GC+PSK +                   I    + L+  T+   
Sbjct: 30  VLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLT-------NIANVKIPLDFSTVQDR 82

Query: 588 KSAAVKA-LTGGIAHLFKSNK 607
           K    +        ++ +   
Sbjct: 83  KDYVQELRFKQHKRNMSQYET 103

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Length = 499

 Score =  339 bits (871), Expect = e-105
 Identities = 54/274 (19%), Positives = 102/274 (37%), Gaps = 30/274 (10%)

Query: 824  KGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGP------NTVTVIKS 877
               K++L  +         A +  I     S  V  + G G++         + +    +
Sbjct: 77   DDAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAA 136

Query: 878  DGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK---------------- 921
            DGST E +   +L+ATG+     P  + D E I++      L                  
Sbjct: 137  DGSTSEHEADVVLVATGASPRILPSAQPDGERILTWRQLYDLDALPDHLIVVGSGVTGAE 196

Query: 922  -GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN 980
                +  LG  VT +   + +     D + A   +    ++G++     +    +++G  
Sbjct: 197  FVDAYTELGVPVTVVASQDHVLP-YEDADAALVLEESFAERGVRLFKNARAASVTRTGAG 255

Query: 981  ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVI 1040
            + VT+ +         +     L+ +G  P T  LGLE +GI+      + V+   +T+ 
Sbjct: 256  VLVTMTD------GRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDRVSRTLA 309

Query: 1041 PNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
              I+A GDC     LA  A  +G + +    G+ 
Sbjct: 310  TGIYAAGDCTGLLPLASVAAMQGRIAMYHALGEG 343

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Length = 499

 Score =  154 bits (391), Expect = 6e-40
 Identities = 21/77 (27%), Positives = 39/77 (50%)

Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
            +  +    P   N+RAK +    GFVK+   + T  V+G  ++ P A ELI    +A++
Sbjct: 376 SVAARTIMLPLRTNARAKMSEMRHGFVKIFCRRSTGVVIGGVVVAPIASELILPIAVAVQ 435

Query: 512 YGASCEDVARTCHAHPT 528
              +  ++A+T   +P+
Sbjct: 436 NRITVNELAQTLAVYPS 452

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Length = 499

 Score =  114 bits (289), Expect = 8e-27
 Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 1/79 (1%)

Query: 529 VCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGTK 588
             ++  D +GG  +   C+PSK  + ++               I+ +  K++L  +    
Sbjct: 32  TVIDC-DGIGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKISLPQIHARV 90

Query: 589 SAAVKALTGGIAHLFKSNK 607
                A +  I     S  
Sbjct: 91  KTLAAAQSADITAQLLSMG 109

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} Length = 492

 Score =  326 bits (838), Expect = e-101
 Identities = 53/273 (19%), Positives = 94/273 (34%), Gaps = 33/273 (12%)

Query: 824  KGVKLNLETMM----GTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDG 879
              + +N + +M      +   V  +   +    + +K+    G  K    +T+ V     
Sbjct: 78   DRISVNGKAVMKRIQTERDRFVGFVVESVESFDEQDKI---RGFAKFLDEHTLQV----D 130

Query: 880  STEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK-----------------G 922
               +V  K I+IATGS       +      ++++     L                   G
Sbjct: 131  DHSQVIAKRIVIATGSRPNYPEFLAAAGSRLLTNDNLFELNDLPKSVAVFGPGVIGLELG 190

Query: 923  SVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNIT 982
                RLG  V       ++     D E+ +  ++   ++   F    +V    +  D + 
Sbjct: 191  QALSRLGVIVKVFGRSGSVAN-LQDEEMKRYAEKTFNEEFY-FDAKARVISTIEKEDAVE 248

Query: 983  VTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVN-SRFQTVIP 1041
            V   +     +K   S   +L   GR+     LGLE   IE D+K     +    QT + 
Sbjct: 249  VIYFDKSG--QKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDELTLQTSVD 306

Query: 1042 NIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
            +IF  GD  +   L H+A D+G V         
Sbjct: 307  HIFVAGDANNTLTLLHEAADDGKVAGTNAGAYP 339

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} Length = 492

 Score =  161 bits (409), Expect = 3e-42
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
              Y VG+  F    R++      G + V  D+ + + LG  + GPAA  + +    A +
Sbjct: 378 AANYVVGQVSFEGQGRSRVMGKNKGLLNVYADRTSGEFLGAEMFGPAAEHIGHLLAWARQ 437

Query: 512 YGASCEDVARTCHAHPTV 529
              + + +      HP +
Sbjct: 438 QQMTVQAMLTMPFYHPVI 455

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} Length = 492

 Score =  118 bits (299), Expect = 4e-28
 Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 7/84 (8%)

Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMM-- 585
            V +E     G TC  VGC+PSK L+  +   + A        GI+V+ + +N + +M  
Sbjct: 34  VVLIEG-GAYGTTCARVGCMPSKLLIAAADASYHASQT--DLFGIQVDRISVNGKAVMKR 90

Query: 586 --GTKSAAVKALTGGIAHLFKSNK 607
               +   V  +   +    + +K
Sbjct: 91  IQTERDRFVGFVVESVESFDEQDK 114

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523

 Score =  315 bits (808), Expect = 2e-96
 Identities = 57/288 (19%), Positives = 102/288 (35%), Gaps = 32/288 (11%)

Query: 811  YHLATKLFTQAG--DKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQ---LNGHGK 865
              LA     Q    D   K+     +     A +    GI +     ++     LN   K
Sbjct: 100  LMLARTFSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAK 159

Query: 866  ITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEE-TIVSSTGALSLKK--- 921
            +   +TV       + +  K KN+++A G+         V+ +     +T    L     
Sbjct: 160  VIDNHTVEA-----AGKVFKAKNLILAVGAGPGTLDVPGVNAKGVFDHATLVEELDYEPG 214

Query: 922  ---------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFK 966
                           G  +   G     +     +     D E        + +QGM+  
Sbjct: 215  STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKL-IKDNETRAYVLDRMKEQGMEII 273

Query: 967  LGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDE 1026
             G+ VT   +  +     +  +     +  +  D + + +G +P +  L  + +G++   
Sbjct: 274  SGSNVTRIEEDANGRVQAVVAMTP-NGEMRIETDFVFLGLGEQPRSAELA-KILGLDLGP 331

Query: 1027 KGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
            KG V VN   QT +PN++A+GD I GPM   KA   G      + G+K
Sbjct: 332  KGEVLVNEYLQTSVPNVYAVGDLIGGPMEMFKARKSGCYAARNVMGEK 379

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523

 Score =  138 bits (349), Expect = 2e-34
 Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 16/93 (17%)

Query: 452 GIEYKVGKFPFAA----------------NSRAKTNNDTDGFVKVLGDKLTDKVLGVHII 495
           G E    K P                    +  K      GF K++ D  T KVLG H +
Sbjct: 411 GHEIVTIKMPPDTENGLNVALPASDRTMLYAFGKGTAHMSGFQKIVIDAKTRKVLGAHHV 470

Query: 496 GPAAGELINEAVLAMEYGASCEDVARTCHAHPT 528
           G  A +      + ++ G + +++         
Sbjct: 471 GYGAKDAFQYLNVLIKQGLTVDELGDMDELFLN 503

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523

 Score =  112 bits (281), Expect = 1e-25
 Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 1/81 (1%)

Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGT 587
            + V++   LGG+C +  C+P     + +    +A +             K+     +  
Sbjct: 69  QLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLART-FSGQYWFPDMTEKVVGIKEVVD 127

Query: 588 KSAAVKALTGGIAHLFKSNKA 608
              A +    GI +     + 
Sbjct: 128 LFRAGRNGPHGIMNFQSKEQL 148

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467

 Score =  312 bits (802), Expect = 4e-96
 Identities = 58/285 (20%), Positives = 104/285 (36%), Gaps = 30/285 (10%)

Query: 811  YHLATKLFTQAG--DKGVKLNLETMMGTKSAAVKALTGG--IAHLFKSNKVTQLNGHGKI 866
             HL  +     G       ++   ++  + A V  L        L  +  +T ++G  + 
Sbjct: 60   AHLRRESPFDGGIAATVPTIDRSKLLAQQQARVDELRHAKYEGILGGNPAITVVHGEARF 119

Query: 867  TGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK----- 921
                ++TV  ++G    V     L+ATG+     P   + E    +ST AL+        
Sbjct: 120  KDDQSLTVRLNEGGERVVMFDRCLVATGASPAVPPIPGLKESPYWTSTEALASDTIPERL 179

Query: 922  ------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGT 969
                           + RLG++VT +           D  + +        +G++    T
Sbjct: 180  AVIGSSVVALELAQAFARLGSKVTVLARNTLFFRE--DPAIGEAVTAAFRAEGIEVLEHT 237

Query: 970  KVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGR 1029
            + +  +       +T  +        EL  D LLV  GR P T +L L+  G+  + +G 
Sbjct: 238  QASQVAHMDGEFVLTTTH-------GELRADKLLVATGRTPNTRSLALDAAGVTVNAQGA 290

Query: 1030 VPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
            + ++   +T  PNI+A GDC   P   + A   G      + G  
Sbjct: 291  IVIDQGMRTSNPNIYAAGDCTDQPQFVYVAAAAGTRAAINMTGGD 335

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467

 Score =  154 bits (393), Expect = 2e-40
 Identities = 24/77 (31%), Positives = 40/77 (51%)

Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
           GIE            RA  N DT GF+K++ ++ + +++GV  + P AGELI  A LA+ 
Sbjct: 367 GIETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSHRLIGVQAVAPEAGELIQTAALAIR 426

Query: 512 YGASCEDVARTCHAHPT 528
              + +++A     + T
Sbjct: 427 NRMTVQELADQLFPYLT 443

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467

 Score =  106 bits (266), Expect = 5e-24
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 4/82 (4%)

Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGT 587
              +E+  T+GGTC+NVGC+PSK ++  +H  H+         GI      ++   ++  
Sbjct: 30  VTLIER-GTIGGTCVNVGCVPSKIMIRAAHIAHLRRESP-FDGGIAATVPTIDRSKLLAQ 87

Query: 588 KSAAVKALTGG--IAHLFKSNK 607
           + A V  L        L  +  
Sbjct: 88  QQARVDELRHAKYEGILGGNPA 109

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 500

 Score =  245 bits (628), Expect = 3e-71
 Identities = 57/311 (18%), Positives = 104/311 (33%), Gaps = 73/311 (23%)

Query: 826  VKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGST---- 881
               NL  ++  +   ++ L          +KV    G       N + +  +  +     
Sbjct: 73   FSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDN 132

Query: 882  -----EEVKTKNILIATGSE--VTPFPGIEVDEETIVSSTGALSLKK------------- 921
                 E ++ +NILIA G++    P  GI    E  +SS    ++K+             
Sbjct: 133  GPLNEEILEGRNILIAVGNKPVFPPVKGI----ENTISSDEFFNIKESKKIGIVGSGYIA 188

Query: 922  ---GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSG 978
                +V  RLG +       N I     D  V    +  + K  +       V    K  
Sbjct: 189  VELINVIKRLGIDSYIFARGNRILR-KFDESVINVLENDMKKNNINIVTFADVVEIKKVS 247

Query: 979  DN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQ 1037
            D  +++ + +      +     D ++ CVGR P T NL LE++ +E +    + V+   +
Sbjct: 248  DKNLSIHLSD-----GRIYEHFDHVIYCVGRSPDTENLKLEKLNVETN-NNYIVVDENQR 301

Query: 1038 TVIPNIFAIGDC----------------------------------IHGPMLAHKAEDEG 1063
            T + NI+A+GDC                                   +   L   A + G
Sbjct: 302  TSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAG 361

Query: 1064 IVCVEGIAGDK 1074
             +  + +   K
Sbjct: 362  RLLADRLFLKK 372

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 500

 Score =  115 bits (290), Expect = 6e-27
 Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 2/79 (2%)

Query: 452 GIEYKVGKFP--FAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLA 509
            ++    KF   F +    +       ++K++     + + G+HIIG  A E++    +A
Sbjct: 409 NVKIYESKFTNLFFSVYDIEPELKEKTYLKLVCVGKDELIKGLHIIGLNADEIVQGFAVA 468

Query: 510 MEYGASCEDVARTCHAHPT 528
           ++  A+ +D   T   HPT
Sbjct: 469 LKMNATKKDFDETIPIHPT 487

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 500

 Score =  104 bits (262), Expect = 2e-23
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 4/80 (5%)

Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGT 587
              VEK   LGGTC+NVGC+P K + N +  + +    + +  G + +    NL  ++  
Sbjct: 28  VALVEK-SRLGGTCVNVGCVPKKIMFNAASVHDILE--NSRHYGFDTK-FSFNLPLLVER 83

Query: 588 KSAAVKALTGGIAHLFKSNK 607
           +   ++ L          +K
Sbjct: 84  RDKYIQRLNNIYRQNLSKDK 103

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* Length = 488

 Score =  224 bits (574), Expect = 5e-64
 Identities = 65/272 (23%), Positives = 109/272 (40%), Gaps = 23/272 (8%)

Query: 823  DKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTE 882
             + V+ N +TM       VK+L  G     +  KV   N        +TV  +   G   
Sbjct: 85   AQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVDKGGKAT 144

Query: 883  EVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK-----------------GSVW 925
             +  ++I+IATG        ++   E  ++S     LK+                     
Sbjct: 145  LLSAEHIVIATGGRPRYPTQVKGALEYGITSDDIFWLKESPGKTLVVGASYVALECAGFL 204

Query: 926  GRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVT 984
              +G + T    M +I   G D +++      +   G QF  G   +   K   N + VT
Sbjct: 205  TGIGLDTTV--MMRSIPLRGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVT 262

Query: 985  IENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKG-RVPVNSRFQTVIPNI 1043
             E+     K++  + D +L  +GR P T  L LE+ GI  + K  ++ V+++  T +P+I
Sbjct: 263  WEDHAS-GKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEATSVPHI 321

Query: 1044 FAIGDCIHG-PMLAHKAEDEGIVCVEGIAGDK 1074
            +AIGD   G P L   A   G +  + + G  
Sbjct: 322  YAIGDVAEGRPELTPTAIKAGKLLAQRLFGKS 353

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* Length = 488

 Score = 86.1 bits (214), Expect = 2e-17
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 4/82 (4%)

Query: 452 GIEYKVGKFPFAANSRAKTNNDTD---GFVKVLGDKLTD-KVLGVHIIGPAAGELINEAV 507
             +  V  +         T  D D    ++K++  +     VLG+H +GP AGE+     
Sbjct: 386 HGQEHVEVYHAYYKPLEFTVADRDASQCYIKMVCMREPPQLVLGLHFLGPNAGEVTQGFA 445

Query: 508 LAMEYGASCEDVARTCHAHPTV 529
           L ++ GAS   V +T   HPT 
Sbjct: 446 LGIKCGASYAQVMQTVGIHPTC 467

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* Length = 488

 Score = 75.3 bits (186), Expect = 4e-14
 Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 537 LGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEV-EGVKLNLETMMGTKSAAVKAL 595
           LGGTC+NVGCIP K +   +    M    D    G EV + V+ N +TM       VK+L
Sbjct: 49  LGGTCVNVGCIPKKLMHQAALLGGMIR--DAHHYGWEVAQPVQHNWKTMAEAVQNHVKSL 106

Query: 596 TGGIAHLFKSNK 607
             G     +  K
Sbjct: 107 NWGHRVQLQDRK 118

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* Length = 519

 Score =  215 bits (549), Expect = 2e-60
 Identities = 59/275 (21%), Positives = 112/275 (40%), Gaps = 27/275 (9%)

Query: 823  DKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTE 882
            ++ VK + + M+      + +L  G     +  KV   N +G+  GP+ +    + G  +
Sbjct: 111  EETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEK 170

Query: 883  EVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK-----------------GSVW 925
                +  LIATG     + GI  D+E  +SS    SL                       
Sbjct: 171  IYSAERFLIATGERPR-YLGIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFL 229

Query: 926  GRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN----I 981
              +G +VT    + +I   G D ++A +    + + G++F          +        +
Sbjct: 230  AGIGLDVTV--MVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRL 287

Query: 982  TVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEK-GRVPVNSRFQTVI 1040
             V  ++  +  +  E   + +++ +GR   T  +GLE +G++ +EK G++PV    QT +
Sbjct: 288  RVVAQS-TNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNV 346

Query: 1041 PNIFAIGDCIHG-PMLAHKAEDEGIVCVEGIAGDK 1074
            P I+AIGD +     L   A   G +  + +    
Sbjct: 347  PYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGS 381

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* Length = 519

 Score = 83.4 bits (207), Expect = 1e-16
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 3/76 (3%)

Query: 455 YKVGKFPFAANSRAKTNNDTDGFVKVLGD-KLTDKVLGVHIIGPAAGELINEAVLAMEYG 513
           Y    +P      ++ NN    + K++ + K  ++V+G H++GP AGE+      A++ G
Sbjct: 422 YHSYFWPLEWTIPSRDNNKC--YAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCG 479

Query: 514 ASCEDVARTCHAHPTV 529
            + + +  T   HP  
Sbjct: 480 LTKKQLDSTIGIHPVC 495

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* Length = 519

 Score = 74.6 bits (184), Expect = 6e-14
 Identities = 28/106 (26%), Positives = 41/106 (38%), Gaps = 13/106 (12%)

Query: 506 AVLAMEYGAS---CEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMA 562
           A  A +YG      + V  T              LGGTC+NVGCIP K +   +      
Sbjct: 48  AKEAAQYGKKVMVLDFVTPTPLG-------TRWGLGGTCVNVGCIPKKLMHQAALLGQAL 100

Query: 563 HSGDMKARGIEV-EGVKLNLETMMGTKSAAVKALTGGIAHLFKSNK 607
              D +  G +V E VK + + M+      + +L  G     +  K
Sbjct: 101 Q--DSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKK 144

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* Length = 483

 Score =  209 bits (534), Expect = 8e-59
 Identities = 60/271 (22%), Positives = 109/271 (40%), Gaps = 25/271 (9%)

Query: 823  DKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTE 882
            D  +K +   ++ +    +K++        +  KV  +NG G     +T+      G   
Sbjct: 89   DDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGE-R 147

Query: 883  EVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK-----------------GSVW 925
             +  +  +IA G     +P I    E  ++S    SL +                     
Sbjct: 148  TITAQTFVIAVGGRPR-YPDIPGAVEYGITSDDLFSLDREPGKTLVVGAGYIGLECAGFL 206

Query: 926  GRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGD-NITVT 984
              LG E T    + +I   G D ++A+     + ++G+ F   T      K  D  + V 
Sbjct: 207  KGLGYEPTV--MVRSIVLRGFDQQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVK 264

Query: 985  IENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIF 1044
             +NV+   ++ E   D +L  +GR+    +L L   G+   +K ++PV+S+  T + NI+
Sbjct: 265  YKNVET-GEESEDVYDTVLWAIGRKGLVDDLNLPNAGV-TVQKDKIPVDSQEATNVANIY 322

Query: 1045 AIGDCIHG-PMLAHKAEDEGIVCVEGIAGDK 1074
            A+GD I+G P L   A   G +    + G  
Sbjct: 323  AVGDIIYGKPELTPVAVLAGRLLARRLYGGS 353

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* Length = 483

 Score = 79.5 bits (197), Expect = 2e-15
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 2/78 (2%)

Query: 453 IEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTD-KVLGVHIIGPAAGELINEAVLAME 511
           IE   G +        +  +    ++K + ++  D +V G+H IGP AGE+I     A++
Sbjct: 391 IEVFHGYYKPTEFFIPQ-KSVRYCYLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAAALK 449

Query: 512 YGASCEDVARTCHAHPTV 529
            G +   +  T   HPT 
Sbjct: 450 SGLTINTLINTVGIHPTT 467

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* Length = 483

 Score = 77.2 bits (191), Expect = 9e-15
 Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 6/103 (5%)

Query: 506 AVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSG 565
           A  A+  GA    VA      PT  +     +GGTC+NVGCIP K +   S      H  
Sbjct: 25  AKEAVLNGAR---VACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVH-- 79

Query: 566 DMKARGIEV-EGVKLNLETMMGTKSAAVKALTGGIAHLFKSNK 607
           +  A G  V + +K +   ++ +    +K++        +  K
Sbjct: 80  EAAAYGWNVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKK 122

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598

 Score =  210 bits (536), Expect = 5e-58
 Identities = 61/281 (21%), Positives = 105/281 (37%), Gaps = 30/281 (10%)

Query: 820  QAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDG 879
                  +  N  TM+    + + +L  G     + N+VT LN  G++  P+ V +   + 
Sbjct: 184  SLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISPHEVQITDKNQ 243

Query: 880  STEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK-----------------G 922
                +    I++ATG     +P I    E  ++S    SL                    
Sbjct: 244  KVSTITGNKIILATGERPK-YPEIPGAVEYGITSDDLFSLPYFPGKTLVIGASYVALECA 302

Query: 923  SVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLG--------TKVTGA 974
                 LG +VT    + +I   G D ++A++    +   G++F            KV   
Sbjct: 303  GFLASLGGDVTV--MVRSILLRGFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDT 360

Query: 975  SKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNS 1034
              +   + +   +  D  KK E   + ++  VGR P    +  E +G++ D+ GRV    
Sbjct: 361  ENNKPGLLLVKGHYTD-GKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTD 419

Query: 1035 RFQTVIPNIFAIGDCIHG-PMLAHKAEDEGIVCVEGIAGDK 1074
              QT + N++AIGD   G P L   A   G      +    
Sbjct: 420  DEQTTVSNVYAIGDINAGKPQLTPVAIQAGRYLARRLFAGA 460

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598

 Score = 89.3 bits (222), Expect = 2e-18
 Identities = 23/78 (29%), Positives = 35/78 (44%)

Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
            IE     F     + A   ++      V       +VLG+H++GP AGE+     +A++
Sbjct: 497 DIEVYHSNFKPLEWTVAHREDNVCYMKLVCRKSDNMRVLGLHVLGPNAGEITQGYAVAIK 556

Query: 512 YGASCEDVARTCHAHPTV 529
            GA+  D  RT   HPT 
Sbjct: 557 MGATKADFDRTIGIHPTC 574

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598

 Score = 73.5 bits (181), Expect = 2e-13
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 537 LGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVE--GVKLNLETMMGTKSAAVKA 594
           LGGTC+NVGCIP K +       H     D +  G  ++   +  N  TM+    + + +
Sbjct: 150 LGGTCVNVGCIPKKLMHQAGLLSHALE--DAEHFGWSLDRSKISHNWSTMVEGVQSHIGS 207

Query: 595 LTGGIAHLFKSNK 607
           L  G     + N+
Sbjct: 208 LNWGYKVALRDNQ 220

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450

 Score =  194 bits (496), Expect = 4e-54
 Identities = 63/288 (21%), Positives = 109/288 (37%), Gaps = 41/288 (14%)

Query: 812  HLATKLFTQAGDKG-----VKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKI 866
             +   +     D G      K N ET++ +++A +  +     ++   N V  + G  + 
Sbjct: 58   QIREAIHMYGPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARF 117

Query: 867  TGPNTVTVIKSDGSTEEVKTKNILIATGSE--VTPFPGIEVDEETIVSSTGALSLKK--- 921
                T+ V     + E +   +ILIATG        PG+E      + S G  +L     
Sbjct: 118  VDAKTLEV-----NGETITADHILIATGGRPSHPDIPGVEY----GIDSDGFFALPALPE 168

Query: 922  --------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKL 967
                          G V   LGA+    E  +A      D  +++    ++  +G Q   
Sbjct: 169  RVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPL-PSFDPMISETLVEVMNAEGPQLHT 227

Query: 968  GTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDE 1026
                    K+ D  +T+ +E+          + D L+  +GR P   N+ LE  G++ +E
Sbjct: 228  NAIPKAVVKNTDGSLTLELED------GRSETVDCLIWAIGREPANDNINLEAAGVKTNE 281

Query: 1027 KGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
            KG + V+    T I  I+A+GD      L   A   G    E +  +K
Sbjct: 282  KGYIVVDKYQNTNIEGIYAVGDNTGAVELTPVAVAAGRRLSERLFNNK 329

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450

 Score = 92.2 bits (230), Expect = 1e-19
 Identities = 22/78 (28%), Positives = 38/78 (48%)

Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
             + KV K  F A   A T +     +K++     +K++G+H IG    E++    +A++
Sbjct: 365 DDQVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFGMDEMLQGFAVALK 424

Query: 512 YGASCEDVARTCHAHPTV 529
            GA+ +D   T   HPT 
Sbjct: 425 MGATKKDFDNTVAIHPTA 442

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450

 Score = 69.8 bits (172), Expect = 2e-12
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 1/79 (1%)

Query: 529 VCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGTK 588
             + +   LGGTC+NVGC+P K + + +      H       G +    K N ET++ ++
Sbjct: 30  CALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHM-YGPDYGFDTTINKFNWETLIASR 88

Query: 589 SAAVKALTGGIAHLFKSNK 607
           +A +  +     ++   N 
Sbjct: 89  TAYIDRIHTSYENVLGKNN 107

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Length = 479

 Score =  189 bits (482), Expect = 7e-52
 Identities = 52/268 (19%), Positives = 95/268 (35%), Gaps = 23/268 (8%)

Query: 824  KGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEE 883
            + +  N       + A V  L G      +  KV  + G  +      V V K D +TE 
Sbjct: 87   EHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGWARFNKDGNVEVQKRDNTTEV 146

Query: 884  VKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK-----------------GSVWG 926
                +IL+ATG +      I   E     S G   L++                   V+ 
Sbjct: 147  YSANHILVATGGKAIFPENIPGFELGT-DSDGFFRLEEQPKKVVVVGAGYIGIELAGVFH 205

Query: 927  RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIE 986
             LG+E   +     +     D  +         K+G+     +K+    K+ +   +   
Sbjct: 206  GLGSETHLVIRGETVL-RKFDECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLK-- 262

Query: 987  NVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAI 1046
             +     K     D L+  +GR+ +   +G E +GI+ +   ++  +    T +PNI+++
Sbjct: 263  -IHMNDSKSIDDVDELIWTIGRKSHL-GMGSENVGIKLNSHDQIIADEYQNTNVPNIYSL 320

Query: 1047 GDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
            GD +    L   A   G      + G +
Sbjct: 321  GDVVGKVELTPVAIAAGRKLSNRLFGPE 348

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Length = 479

 Score = 84.9 bits (211), Expect = 3e-17
 Identities = 20/78 (25%), Positives = 36/78 (46%)

Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
               KV    F A   A  +  +    K++     +KV+G+HI+G ++ E++    +A++
Sbjct: 386 KENIKVYNSKFTAMYYAMLSEKSPTRYKIVCAGPNEKVVGLHIVGDSSAEILQGFGVAIK 445

Query: 512 YGASCEDVARTCHAHPTV 529
            GA+  D       HPT 
Sbjct: 446 MGATKADFDNCVAIHPTS 463

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Length = 479

 Score = 64.5 bits (158), Expect = 9e-11
 Identities = 27/108 (25%), Positives = 34/108 (31%), Gaps = 21/108 (19%)

Query: 506 AVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSG 565
           A  A  YGA                VE    LGGTC+NVGC+P K +   S         
Sbjct: 27  ARRAASYGAK---TL---------LVEA-KALGGTCVNVGCVPKKVMWYASDLATRVS-- 71

Query: 566 DMKARGIEV------EGVKLNLETMMGTKSAAVKALTGGIAHLFKSNK 607
                G+        E +  N       + A V  L G      +  K
Sbjct: 72  HANEYGLYQNLPLDKEHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEK 119

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Length = 490

 Score =  185 bits (473), Expect = 1e-50
 Identities = 67/281 (23%), Positives = 114/281 (40%), Gaps = 35/281 (12%)

Query: 820  QAGDKGVKLNLETMMGTKSAAVKALTGGIA-HLFKSNKVTQLNGHGKITGPNTVTV---- 874
            +   + V+ N + ++  K+ AV  +          +  +T   G G +   +TV V    
Sbjct: 81   ELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESA 140

Query: 875  IKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK------------- 921
              +    E + T+ IL+ATGS      GIE D+  I +S  A  L +             
Sbjct: 141  DPNSAVLETLDTEYILLATGSWPQ-HLGIEGDDLCI-TSNEAFYLDEAPKRALCVGGGYI 198

Query: 922  ----GSVWGRL---GAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGA 974
                  ++      G +V      + I   G D E+ KQ    L   G+  +        
Sbjct: 199  SIEFAGIFNAYKARGGQVDLAYRGDMIL-RGFDSELRKQLTEQLRANGINVRTHENPAKV 257

Query: 975  SKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVN 1033
            +K+ D    V  E+        E   D +++ +GR P +  L LE+ G+E  + G + V+
Sbjct: 258  TKNADGTRHVVFES------GAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVD 311

Query: 1034 SRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
            +  +T + NI+AIGD     ML   A +EG   V+ +  +K
Sbjct: 312  AYSKTNVDNIYAIGDVTDRVMLTPVAINEGAAFVDTVFANK 352

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Length = 490

 Score = 82.6 bits (205), Expect = 2e-16
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 1/79 (1%)

Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGF-VKVLGDKLTDKVLGVHIIGPAAGELINEAVLAM 510
             +  V +  F       + +    F V+++ +    +VLGVH++G ++ E+I    + +
Sbjct: 385 YDQVAVYESSFTPLMHNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPEIIQSVAICL 444

Query: 511 EYGASCEDVARTCHAHPTV 529
           + GA   D   T   HPT 
Sbjct: 445 KMGAKISDFYNTIGVHPTS 463

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Length = 490

 Score = 70.3 bits (173), Expect = 2e-12
 Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 8/106 (7%)

Query: 509 AMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMK 568
           A  +      VA                LGGTC+NVGC+P K ++  ++Y       +  
Sbjct: 23  ASLHKKR---VA-VIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIR--ESA 76

Query: 569 ARGIEV--EGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKALKII 612
             G E+  E V+ N + ++  K+ AV  +      +F   + L   
Sbjct: 77  GFGWELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFH 122

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484

 Score =  184 bits (470), Expect = 3e-50
 Identities = 49/267 (18%), Positives = 104/267 (38%), Gaps = 28/267 (10%)

Query: 825  GVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEV 884
                N E ++  K+  +  L G      +++ V            +T+ +  +    E +
Sbjct: 97   DPIFNWEKLVAAKNKEISRLEGLYREGLQNSNVHIYESRAVFVDEHTLELSVTG---ERI 153

Query: 885  KTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK-----------------GSVWGR 927
              + ILIATG+++     I+  +  + +S     L+K                  +++  
Sbjct: 154  SAEKILIATGAKIVSNSAIKGSDLCL-TSNEIFDLEKLPKSIVIVGGGYIGVEFANIFHG 212

Query: 928  LGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIEN 987
            LG + T +   + I     D ++ +     +  +G+       V+    + +   V + N
Sbjct: 213  LGVKTTLLHRGDLIL-RNFDYDLRQLLNDAMVAKGISIIYEATVSQVQSTENCYNVVLTN 271

Query: 988  VKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIG 1047
                   + +  D +++  GR P T  LGLE  G++ +E G V V+ +  T + +I+A+G
Sbjct: 272  ------GQTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTTNVSHIWAVG 325

Query: 1048 DCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
            D      L   A  + +  V+    + 
Sbjct: 326  DVTGHIQLTPVAIHDAMCFVKNAFENT 352

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484

 Score = 86.4 bits (215), Expect = 1e-17
 Identities = 15/78 (19%), Positives = 36/78 (46%)

Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
               ++ +  F       + +    F+K++ D  +  V+G H++G  AGE+     ++++
Sbjct: 385 YKRVEIYRTVFRPMRNVLSGSPEKMFMKLVVDGESRIVVGAHVLGENAGEIAQLIGISLK 444

Query: 512 YGASCEDVARTCHAHPTV 529
              + +   +T   HPT+
Sbjct: 445 GKLTKDIFDKTMAVHPTM 462

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484

 Score = 73.7 bits (182), Expect = 1e-13
 Identities = 23/102 (22%), Positives = 35/102 (34%), Gaps = 15/102 (14%)

Query: 506 AVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSG 565
           A LA   G     VA           E+   +GGTC+  GC+P K     S Y       
Sbjct: 42  ARLAGALGKR---VA---------IAEE-YRIGGTCVIRGCVPKKLYFYASQYAQEFS-- 86

Query: 566 DMKARGIEVEGVKLNLETMMGTKSAAVKALTGGIAHLFKSNK 607
                G +      N E ++  K+  +  L G      +++ 
Sbjct: 87  KSIGFGWKYADPIFNWEKLVAAKNKEISRLEGLYREGLQNSN 128

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... Length = 478

 Score =  182 bits (464), Expect = 2e-49
 Identities = 54/275 (19%), Positives = 101/275 (36%), Gaps = 35/275 (12%)

Query: 826  VKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVK 885
             K N   +   + A V  L     +    + +  + GH   T     T+  S    ++  
Sbjct: 92   GKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSG---KKYT 148

Query: 886  TKNILIATGS-----EVTPFPGIEVDEETIVSSTGALSLKK-----------------GS 923
              +ILIATG        +  PG  +     ++S G   L++                   
Sbjct: 149  APHILIATGGMPSTPHESQIPGASL----GITSDGFFQLEELPGRSVIVGAGYIAVEMAG 204

Query: 924  VWGRLGAEVTAIEFMNAIGGM-GIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNIT 982
            +   LG++ + +   + +  +   D  ++      L   G++    ++V    K+   + 
Sbjct: 205  ILSALGSKTSLMIRHDKV--LRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLE 262

Query: 983  VTIENVKD---PTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTV 1039
            V++        P        D LL  +GR P T +L L ++GI+ D+KG + V+    T 
Sbjct: 263  VSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTN 322

Query: 1040 IPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
            +  I+A+GD     +L   A   G      +   K
Sbjct: 323  VKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFEYK 357

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... Length = 478

 Score = 83.3 bits (207), Expect = 1e-16
 Identities = 20/78 (25%), Positives = 33/78 (42%)

Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
               K     F     A T   T   +K++     +KV+G+H+ G    E++    +A++
Sbjct: 393 IENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCDEMLQGFAVAVK 452

Query: 512 YGASCEDVARTCHAHPTV 529
            GA+  D   T   HPT 
Sbjct: 453 MGATKADFDNTVAIHPTS 470

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... Length = 478

 Score = 72.9 bits (180), Expect = 2e-13
 Identities = 28/102 (27%), Positives = 37/102 (36%), Gaps = 15/102 (14%)

Query: 506 AVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSG 565
           A  A E GA     A          VE    LGGTC+NVGC+P K + N + +    H  
Sbjct: 36  ARRAAELGAR---AA---------VVES-HKLGGTCVNVGCVPKKVMWNTAVHSEFMH-- 80

Query: 566 DMKARGIEVEGVKLNLETMMGTKSAAVKALTGGIAHLFKSNK 607
           D    G      K N   +   + A V  L     +    + 
Sbjct: 81  DHADYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSH 122

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495

 Score =  181 bits (462), Expect = 4e-49
 Identities = 69/283 (24%), Positives = 114/283 (40%), Gaps = 39/283 (13%)

Query: 820  QAGDKGVKLNLETMMGTKSAAVKALTGGIA-HLFKSNKVTQLNGHGKITGPNTVTV---- 874
            +     VK N + ++  K+ AV  +          +  +    G G +   N V V    
Sbjct: 85   EFDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLESKNVVVVRETA 144

Query: 875  IKSDGSTEEVKTKNILIATGSE--VTPFPGIEVDEETIVSSTGALSLKK----------- 921
                   E ++  +IL+ATGS   +   PGIE      +SS  A  L +           
Sbjct: 145  DPKSAVKERLQADHILLATGSWPQMPAIPGIEH----CISSNEAFYLPEPPRRVLTVGGG 200

Query: 922  ------GSVWGRL---GAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVT 972
                    ++      G +VT     N I   G D  + ++  + L   G++        
Sbjct: 201  FISVEFAGIFNAYKPPGGKVTLCYRNNLIL-RGFDETIREEVTKQLTANGIEIMTNENPA 259

Query: 973  GASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVP 1031
              S + D    VT E+       + L  D +++ +GR P T++L L  +G++   KG V 
Sbjct: 260  KVSLNTDGSKHVTFES------GKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQ 313

Query: 1032 VNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
            V+   +T +PNI+AIGD     ML   A +EG   V+ + G+K
Sbjct: 314  VDEFSRTNVPNIYAIGDITDRLMLTPVAINEGAALVDTVFGNK 356

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495

 Score = 83.0 bits (206), Expect = 2e-16
 Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 1/79 (1%)

Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFV-KVLGDKLTDKVLGVHIIGPAAGELINEAVLAM 510
             +  V    F       + +    FV K++ +     VLGVH++G  A E+I    + +
Sbjct: 389 FEKVAVYMSSFTPLMHNISGSKYKKFVAKIVTNHSDGTVLGVHLLGDGAPEIIQAVGVCL 448

Query: 511 EYGASCEDVARTCHAHPTV 529
              A   D   T   HPT 
Sbjct: 449 RLNAKISDFYNTIGVHPTS 467

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495

 Score = 68.4 bits (168), Expect = 6e-12
 Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 8/106 (7%)

Query: 509 AMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMK 568
           A  YG     VA       +        LGGTC+NVGC+P K ++  + Y       +  
Sbjct: 27  ATLYGKR---VA-VVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLR--ESA 80

Query: 569 ARGIEVEG--VKLNLETMMGTKSAAVKALTGGIAHLFKSNKALKII 612
             G E +G  VK N + ++  K+ AV  +      +F   + L   
Sbjct: 81  GFGWEFDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFF 126

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Length = 463

 Score =  179 bits (456), Expect = 1e-48
 Identities = 56/267 (20%), Positives = 103/267 (38%), Gaps = 27/267 (10%)

Query: 825  GVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEV 884
              + +   ++  K   +  L G       +     L+   ++ GPNTV ++ S    + V
Sbjct: 76   ESRFDWAKLVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAGPNTVKLLASG---KTV 132

Query: 885  KTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK-----------------GSVWGR 927
              + I+IA G   +P   +   E  I +S  A  L                    +++  
Sbjct: 133  TAERIVIAVGGHPSPHDALPGHELCI-TSNEAFDLPALPESILIAGGGYIAVEFANIFHG 191

Query: 928  LGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIEN 987
            LG + T I     I     D ++ +     + ++G++      +   S   D   V    
Sbjct: 192  LGVKTTLIYRGKEIL-SRFDQDMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVATT- 249

Query: 988  VKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIG 1047
                 K  E+  D +++ +GR P T+ LGLE  G+  +E G + V++  +T  P I+A+G
Sbjct: 250  ----MKHGEIVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRTSTPGIYALG 305

Query: 1048 DCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
            D      L   A  E +  +E    + 
Sbjct: 306  DVTDRVQLTPVAIHEAMCFIETEYKNN 332

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Length = 463

 Score = 87.6 bits (218), Expect = 4e-18
 Identities = 20/78 (25%), Positives = 35/78 (44%)

Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
             E +V +  F       +       +K++ +    KV+G HI+G  AGE+     +++ 
Sbjct: 365 FQEIEVYRAEFRPMKATLSGRKEKTIMKLVVNAADRKVVGAHILGHDAGEMAQLLGISLR 424

Query: 512 YGASCEDVARTCHAHPTV 529
            G + +D  RT   HPT 
Sbjct: 425 AGCTKDDFDRTMAVHPTA 442

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Length = 463

 Score = 72.1 bits (178), Expect = 3e-13
 Identities = 21/102 (20%), Positives = 32/102 (31%), Gaps = 15/102 (14%)

Query: 506 AVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSG 565
             LA   G     VA           E+    GGTC+  GC+P K  +  S +       
Sbjct: 21  GRLAAALGKK---VA---------IAEE-FRYGGTCVIRGCVPKKLYVYASQFAEHFE-- 65

Query: 566 DMKARGIEVEGVKLNLETMMGTKSAAVKALTGGIAHLFKSNK 607
           D    G  V   + +   ++  K   +  L G       +  
Sbjct: 66  DAAGFGWTVGESRFDWAKLVAAKEQEIARLEGLYRKGLANAG 107

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Length = 463

 Score =  170 bits (434), Expect = 1e-45
 Identities = 55/269 (20%), Positives = 105/269 (39%), Gaps = 34/269 (12%)

Query: 825  GVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEV 884
            G  L+   ++  +   + A+        +   +T+++GH +    +T+ V       + +
Sbjct: 75   GGTLDWPRLVAGRDRYIGAINSFWDGYVERLGITRVDGHARFVDAHTIEV-----EGQRL 129

Query: 885  KTKNILIATGSE--VTPFPGIEVDEETIVSSTGALSLKK-----------------GSVW 925
               +I+IATG    V   PG E+     ++S G  +L++                   + 
Sbjct: 130  SADHIVIATGGRPIVPRLPGAEL----GITSDGFFALQQQPKRVAIIGAGYIGIELAGLL 185

Query: 926  GRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTI 985
               G+EVT +   + +     D  ++      +  QG++  L   V    +     T+  
Sbjct: 186  RSFGSEVTVVALEDRLL-FQFDPLLSATLAENMHAQGIETHLEFAVAALERDAQGTTLVA 244

Query: 986  ENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFA 1045
            ++            D+++  VGR P T +LGLE  GIE    G VP ++   T +P ++A
Sbjct: 245  QD-----GTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQNTNVPGVYA 299

Query: 1046 IGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
            +GD      L   A   G    E +   +
Sbjct: 300  LGDITGRDQLTPVAIAAGRRLAERLFDGQ 328

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Length = 463

 Score = 83.7 bits (208), Expect = 7e-17
 Identities = 20/78 (25%), Positives = 34/78 (43%)

Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
           G    V +  F     A   +     +K++      +V+GVH+IG  A E++    +A++
Sbjct: 363 GDVLTVYETSFTPMRYALNEHGPKTAMKLVCAGPEQRVVGVHVIGDGADEMLQGFAVAVK 422

Query: 512 YGASCEDVARTCHAHPTV 529
            GA+  D   T   HP  
Sbjct: 423 MGATKADFDNTVAIHPGS 440

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Length = 463

 Score = 70.2 bits (173), Expect = 1e-12
 Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 15/102 (14%)

Query: 506 AVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSG 565
           A  A  +G     VA          +E    LGGTC+NVGC+P K +   SH        
Sbjct: 20  AEKAAAFGKR---VA---------LIES-KALGGTCVNVGCVPKKVMWYASHLAEAVR-- 64

Query: 566 DMKARGIEVEGVKLNLETMMGTKSAAVKALTGGIAHLFKSNK 607
           D    G++  G  L+   ++  +   + A+        +   
Sbjct: 65  DAPGFGVQASGGTLDWPRLVAGRDRYIGAINSFWDGYVERLG 106

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472

 Score = 92.2 bits (230), Expect = 1e-19
 Identities = 45/207 (21%), Positives = 80/207 (38%), Gaps = 35/207 (16%)

Query: 871  TVTVI-KSDGSTEEVKTKNILIATGSE--VTPFPGIEV----------DEETIVSSTGAL 917
            TV +     G    +K   +++A GS+    P  G+++          + E +  +  A 
Sbjct: 98   TVEIENLRTGERRTLKYDKLVLALGSKANRPPVEGMDLAGVTPVTNLDEAEFVQHAISAG 157

Query: 918  SLKKGSVWG--------------RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGM 963
             + K  + G                G + T +E  + I        +++  +  L K  +
Sbjct: 158  EVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDV 217

Query: 964  QFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIE 1023
                G KV         +   I      T K  L  D +++  G  P T  L   + G+E
Sbjct: 218  VVHTGEKVVRLEGENGKVARVI------TDKRTLDADLVILAAGVSPNT-QL-ARDAGLE 269

Query: 1024 KDEKGRVPVNSRFQTVIPNIFAIGDCI 1050
             D +G + V++R +T  P+IFA GDC+
Sbjct: 270  LDPRGAIIVDTRMRTSDPDIFAGGDCV 296

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Length = 452

 Score = 90.2 bits (225), Expect = 6e-19
 Identities = 38/206 (18%), Positives = 67/206 (32%), Gaps = 37/206 (17%)

Query: 871  TVTVI-KSDGSTEEVKTKNILIATGSE--VTPFPGIEV----------DEETIVSSTGAL 917
            T+ V        +      +++ TGS+  V P PGI+           D + +       
Sbjct: 90   TIKVKDLITNEEKTEAYDKLIMTTGSKPTVPPIPGIDSSRVYLCKNYNDAKKLFEEAP-- 147

Query: 918  SLKKGSVWG-------------RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQ 964
              K  ++ G                  V  I+    +     D E      +     G+ 
Sbjct: 148  KAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVN 207

Query: 965  FKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEK 1024
              LG+KV    +  D I             +E+  D  ++C+G RP   N  L +  +  
Sbjct: 208  LVLGSKVAAFEEVDDEIITKT------LDGKEIKSDIAILCIGFRP---NTELLKGKVAM 258

Query: 1025 DEKGRVPVNSRFQTVIPNIFAIGDCI 1050
             + G +  +    +   +IFA GD  
Sbjct: 259  LDNGAIITDEYMHSSNRDIFAAGDSA 284

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Length = 452

 Score = 89.8 bits (224), Expect = 7e-19
 Identities = 41/221 (18%), Positives = 82/221 (37%), Gaps = 43/221 (19%)

Query: 855  NKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSE--VTPFPGIEV------- 905
             +V  ++   +      +         +      +++ATG+    T   G +        
Sbjct: 79   REVVAMDVENQ-----LIAW-TRKEEQQWYSYDKLILATGASQFSTQIRGSQTEKLLKYK 132

Query: 906  ---DEETIVSSTGALSLKKGSVWG-------------RLGAEVTAIEFMNAIGGMGIDGE 949
                    V      + +  +V G             ++   V   E +  +     D E
Sbjct: 133  FLSGALAAVPL--LENSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKE 190

Query: 950  VAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009
            +  + Q+ L KQ + F     V G  ++ + I +        T ++E+SCD+ +  +   
Sbjct: 191  MVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLE-------TSEQEISCDSGIFALNLH 243

Query: 1010 PYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCI 1050
            P    L   +  I+++    + V++  QT +PN+FAIGDCI
Sbjct: 244  P---QLAYLDKKIQRNLDQTIAVDAYLQTSVPNVFAIGDCI 281

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* Length = 447

 Score = 89.5 bits (223), Expect = 9e-19
 Identities = 40/222 (18%), Positives = 70/222 (31%), Gaps = 41/222 (18%)

Query: 855  NKVTQLNGHGKITGPNTVTVI-KSDGSTEEVKTKNILIATGSE--VTPFPGIEV------ 905
             ++T +           VTV     G         ++I+ G+       PG ++      
Sbjct: 77   TEITAIQPKEH-----QVTVKDLVSGEERVENYDKLIISPGAVPFELDIPGKDLDNIYLM 131

Query: 906  ----DEETIVSSTGALSLKKGSVWG-------------RLGAEVTAIEFMNAIGGMGIDG 948
                    +   T    +    V G             + G +VT I+ ++   G+ +D 
Sbjct: 132  RGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDK 191

Query: 949  EVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGR 1008
            E        +    +    G  V      G    V        T K     D ++V VG 
Sbjct: 192  EFTDVLTEEMEANNITIATGETVERYEGDGRVQKVV-------TDKNAYDADLVVVAVGV 244

Query: 1009 RPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCI 1050
            RP   N    +  +E    G +  +   +T  P++FA+GD  
Sbjct: 245  RP---NTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDAT 283

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588

 Score = 89.2 bits (222), Expect = 2e-18
 Identities = 54/259 (20%), Positives = 100/259 (38%), Gaps = 57/259 (22%)

Query: 855  NKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKN---ILIATGSE--VTPFPGIEV---- 905
            ++V ++N   K     T+T+   + +T E   +    ++++ G++  V   PGIE     
Sbjct: 114  SEVVKINKEEK-----TITIK--NVTTNETYNEAYDVLILSPGAKPIVPSIPGIEEAKAL 166

Query: 906  -------DEETIVSSTGALSLKKGSVWG-------------RLGAEVTAIEFMNAIGGMG 945
                   D + I +       +  +V G               G EVT +E  N +    
Sbjct: 167  FTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMP-P 225

Query: 946  IDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVC 1005
            ID E+A      +    ++      V    ++G  + +             +  D L++ 
Sbjct: 226  IDYEMAAYVHEHMKNHDVELVFEDGVDALEENGAVVRLK--------SGSVIQTDMLILA 277

Query: 1006 VGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCI-------HGPM---L 1055
            +G +P + +L  +  G+    +G + VN +FQT  P+I+AIGD I              L
Sbjct: 278  IGVQPES-SL-AKGAGLALGVRGTIKVNEKFQTSDPHIYAIGDAIEVKDFVTETETMIPL 335

Query: 1056 AHKAEDEGIVCVEGIAGDK 1074
            A  A  +G +  + I G  
Sbjct: 336  AWPANRQGRMLADIIHGHT 354

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Length = 480

 Score = 88.7 bits (221), Expect = 2e-18
 Identities = 48/208 (23%), Positives = 82/208 (39%), Gaps = 40/208 (19%)

Query: 871  TVTVIKSDGSTEEVKTKN---ILIATGSE--VTPFPGIEV----------DEETIVSSTG 915
             V        T++V   +   +LIATG    +  + G ++          D E I+ +  
Sbjct: 125  IVYAE--HTKTKDVFEFSYDRLLIATGVRPVMPEWEGRDLQGVHLLKTIPDAERILKTLE 182

Query: 916  ALSLKKGSVWG-------------RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQG 962
               ++  ++ G              LG +V  IE  + IG +  DG++A+   +   K  
Sbjct: 183  TNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGTI-YDGDMAEYIYKEADKHH 241

Query: 963  MQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGI 1022
            ++      V     +     V        T K     D +LV VG +P T +  LE   I
Sbjct: 242  IEILTNENVKAFKGNERVEAVE-------TDKGTYKADLVLVSVGVKPNT-DF-LEGTNI 292

Query: 1023 EKDEKGRVPVNSRFQTVIPNIFAIGDCI 1050
              + KG + VN+  QT + +++A GDC 
Sbjct: 293  RTNHKGAIEVNAYMQTNVQDVYAAGDCA 320

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* Length = 490

 Score = 88.4 bits (220), Expect = 3e-18
 Identities = 51/232 (21%), Positives = 87/232 (37%), Gaps = 52/232 (22%)

Query: 855  NKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSE--VTPFPGIEV------- 905
            + V  ++   K     TVT +    +  E   K ++ ATGS+  + P  G E+       
Sbjct: 113  SPVQSIDYDAK-----TVTALVDGKNHVETYDK-LIFATGSQPILPPIKGAEIKEGSLEF 166

Query: 906  --------------DEETIVSSTGALSLKKGSVWG-------------RLGAEVTAIEFM 938
                          +   +++      +K+ +V G             R G EV  I+ +
Sbjct: 167  EATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVV 226

Query: 939  NAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELS 998
            +       D ++     + + + G+Q   G  V   + +G    +        T K E  
Sbjct: 227  DTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVKEVAGNGKVEKII-------TDKNEYD 279

Query: 999  CDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCI 1050
             D +++ VG RP   N  L    I+    G   VN R +T IP ++AIGDC 
Sbjct: 280  VDMVILAVGFRP---NTTLGNGKIDLFRNGAFLVNKRQETSIPGVYAIGDCA 328

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} Length = 449

 Score = 87.9 bits (219), Expect = 3e-18
 Identities = 36/207 (17%), Positives = 65/207 (31%), Gaps = 36/207 (17%)

Query: 869  PNTVTVIKSDGSTEEVKTKNILIATGSE--VTPFPGIEV----------DEETIVSSTGA 916
               V V ++ G         ++ A G+   V    G+ +          D   I      
Sbjct: 87   TGYVRVRENGGEKSYEWDY-LVFANGASPQVPAIEGVNLKGVFTADLPPDALAIREYMEK 145

Query: 917  LSLKKGSVWG-------------RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGM 963
              ++   + G               G  VT I     +     D EV    +  L K+ +
Sbjct: 146  YKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKL-KKHV 204

Query: 964  QFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIE 1023
              +L               V        T   E   + +++  G +P    L  +++G+ 
Sbjct: 205  NLRLQEITMKIEGEERVEKVV-------TDAGEYKAELVILATGIKPNI-EL-AKQLGVR 255

Query: 1024 KDEKGRVPVNSRFQTVIPNIFAIGDCI 1050
              E G +  N + QT + N++A GD  
Sbjct: 256  IGETGAIWTNEKMQTSVENVYAAGDVA 282

>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} Length = 438

 Score = 85.2 bits (212), Expect = 2e-17
 Identities = 45/204 (22%), Positives = 80/204 (39%), Gaps = 38/204 (18%)

Query: 871  TVTVI-KSDGSTEEVKTKNILIATGSEVTPFPGIE----------VDEETIVSSTGALSL 919
            TV+V+ +      E     ++++ G+      G E           D + I     A  +
Sbjct: 90   TVSVLNRKTNEQFEESYDKLILSPGA-SANSLGFESDITFTLRNLEDTDAIDQFIKANQV 148

Query: 920  KKGSVWG-------------RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFK 966
             K  V G               G   T I   + I  + +D ++ +     L K+ + ++
Sbjct: 149  DKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKL-MDADMNQPILDELDKREIPYR 207

Query: 967  LGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDE 1026
            L  ++   +  G+ IT            +    D ++  VG  P +    +E   I+ D 
Sbjct: 208  LNEEINAIN--GNEITFK--------SGKVEHYDMIIEGVGTHPNS-KF-IESSNIKLDR 255

Query: 1027 KGRVPVNSRFQTVIPNIFAIGDCI 1050
            KG +PVN +F+T +PNI+AIGD  
Sbjct: 256  KGFIPVNDKFETNVPNIYAIGDIA 279

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 83.7 bits (206), Expect = 2e-16
 Identities = 90/636 (14%), Positives = 183/636 (28%), Gaps = 171/636 (26%)

Query: 2   KEE--ETMKNGD-IDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKW-WA 57
           KEE    + + D +   +R+F    + Q+ + +  +E   ++  Y          K+  +
Sbjct: 48  KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN-Y----------KFLMS 96

Query: 58  QYIESTEDMDLAMKYYEEARDYL----------SMVRVLCFLQDFSRAAELANA------ 101
                     +  + Y E RD L          ++ R+  +L+      EL  A      
Sbjct: 97  PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156

Query: 102 ----SGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSA 157
               SG T  A  +   Y+   + D  I + ++  +C         + + + L  L    
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL-KNC------NSPETVLEMLQKLLYQI 209

Query: 158 GPSEQIEA---ATYLETIEPDKAVLLYHKAGALHK-ALDLAFKLTLSNSGLVFQ---IKA 210
            P+    +   +     I   +A L        ++  L     L L N   V       A
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-----LVLLN---VQNAKAWNA 261

Query: 211 M--KC--LLKSGDTNKIIFFAGVSRMKEIYV--------------MAANYLQSSDWKSQP 252
               C  LL +     +  F   +    I +              +   YL     +  P
Sbjct: 262 FNLSCKILLTTRFKQ-VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP-QDLP 319

Query: 253 ELLKSIISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYE 312
             + +          P  L+    S  +  +  + N++     +N          D +  
Sbjct: 320 REVLTT--------NPRRLSIIAESI-RDGLATWDNWKH----VN---------CDKLTT 357

Query: 313 TLKSSVVEKLAEVEIDEFGNYEKGLGALNE-----AKR-CLLKHNDSMYETLKSSVVEKI 366
            ++SS +  L   E  +   +++ L               L+      +  +  S V  +
Sbjct: 358 IIESS-LNVLEPAEYRK--MFDR-LSVFPPSAHIPTILLSLI------WFDVIKSDVMVV 407

Query: 367 AE--VDKYLEMKRNQSFRSSNTDIIL----PVEKWTLLSL-ARVLEGIEYKVGKFPFAAN 419
                   L  K+ +    S   I L     +E     +L   +++   Y + K      
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN--EYALHRSIVD--HYNIPK------ 457

Query: 420 SRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPGIEYKVGKFP-------FAANSRAKTNN 472
                  D+D  +    D+     +G H+       ++  F        F      K  +
Sbjct: 458 -----TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL---EQKIRH 509

Query: 473 DTDGFVKV--LGDKLTD-KVLGVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTV 529
           D+  +     + + L   K    +I         N+     +Y      +          
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYIC-------DNDP----KYERLVNAILDFLPKIEEN 558

Query: 530 CVEKNDTLGGTCLNVGCIPSKALLN-NSHYYHMAHS 564
            +    T          +   AL+  +   +  AH 
Sbjct: 559 LICSKYT---------DLLRIALMAEDEAIFEEAHK 585

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.0 bits (147), Expect = 2e-09
 Identities = 107/827 (12%), Positives = 211/827 (25%), Gaps = 331/827 (40%)

Query: 192 DLAFKLTLSNSGLVFQIKAMKCLLKSGDTNK---IIFFAGVSRMKEIY------VMAANY 242
           +   K        +   + +  ++ S D       +F+  +S+ +E+       V+  NY
Sbjct: 32  NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY 91

Query: 243 LQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSCAQV---EIDEFGNY-----EKGLG 294
                +      L S I   ++ + P ++   Y+        +   F  Y     +    
Sbjct: 92  ----KF------LMSPIK--TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP--- 136

Query: 295 ALNEAKRCLLKHNDSMYETL-------KSS-VVEKLAEVEID---EFGNYEKGLGALNEA 343
              + ++ LL+   +    +       K+   ++     ++    +F  +   L   N  
Sbjct: 137 -YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195

Query: 344 KRCLLKHNDSMYETLKSSVVEKIAEVDKYLEMKRNQSFRSSNTD-IILPVEKWTLLSLAR 402
           +  L      M + L               ++  N + RS ++  I L +       L R
Sbjct: 196 ETVLE-----MLQKL-------------LYQIDPNWTSRSDHSSNIKLRIH-SIQAELRR 236

Query: 403 VLEGIEYKVGKFPFAANS--------RAKTNNDTDGFVKVL---GDK-LTDKVLGVHIIG 450
           +L+   Y+        N          AK  N  +   K+L     K +TD +       
Sbjct: 237 LLKSKPYE--------NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288

Query: 451 PGIEYKVGKFPFAANSRAKTNNDTDG-FVKVLGDKLTDKVLGVHIIGPAAGELINEAVLA 509
             +++              T ++     +K L  +  D  L      P      N   L+
Sbjct: 289 ISLDHHSMTL---------TPDEVKSLLLKYLDCRPQD--L------PREVLTTNPRRLS 331

Query: 510 MEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKA 569
           +    S  D                                A  +N  +           
Sbjct: 332 I-IAESIRD-------GL-----------------------ATWDNWKHV---------- 350

Query: 570 RGIEVEGVKLNLETMMGTKSAAVKALT-GGIAHLFKSNKALKI------ITKQIILILII 622
                     N + +     +++  L       +F     L +      I   ++ ++  
Sbjct: 351 ----------NCDKLTTIIESSLNVLEPAEYRKMFDR---LSVFPPSAHIPTILLSLI-- 395

Query: 623 YRVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAA 682
                 W+   +  ++ M +                            +L   S      
Sbjct: 396 ------WF--DVIKSDVMVVV--------------------------NKLHKYS------ 415

Query: 683 YHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCGQLDAVESIASELNVQSDQDLILKCAS 742
             L  +         +I                       SI  EL V+ + +       
Sbjct: 416 --LVEKQPKESTI--SIP----------------------SIYLELKVKLENE------- 442

Query: 743 YFARREHHDRAVQMYAIARRYDQALSLIQTKHVPLSEELADLLVPPESDDQRQVVLNTLG 802
                  H   V  Y I + +D                  D L+PP  D   Q   + +G
Sbjct: 443 ----YALHRSIVDHYNIPKTFDS-----------------DDLIPPYLD---QYFYSHIG 478

Query: 803 NCAAVQANYHLAT-------KLFTQAGDKGVKLNLETMMGTK---SAAVKALTGGIAHLF 852
                   +HL          LF       V L+    +  K    +     +G I +  
Sbjct: 479 --------HHLKNIEHPERMTLFRM-----VFLDFR-FLEQKIRHDSTAWNASGSILNTL 524

Query: 853 KSNKVTQLNGHGK-ITGPNTVTVIKSDGSTEE-VKT-KNILIATGSEVTPFPGIEVDEET 909
                 QL  +   I          +D   E  V    + L      +     I      
Sbjct: 525 -----QQLKFYKPYIC--------DNDPKYERLVNAILDFLPKIEENL-----ICSKYTD 566

Query: 910 IVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQR 956
           ++    AL  +  +++                       E  KQ QR
Sbjct: 567 LLRI--ALMAEDEAIF----------------------EEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.4 bits (135), Expect = 5e-08
 Identities = 76/634 (11%), Positives = 186/634 (29%), Gaps = 164/634 (25%)

Query: 235 IYVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLLAN----------FYVSCAQVE-- 282
           + V    ++ + D K   ++ KSI+   SK +  H++ +          F+   ++ E  
Sbjct: 22  LSVFEDAFVDNFDCKDVQDMPKSIL---SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78

Query: 283 IDEF------GNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGNY--- 333
           + +F       NY+  +  +   +R       SM   +     ++L   +   F  Y   
Sbjct: 79  VQKFVEEVLRINYKFLMSPIKTEQR-----QPSMMTRMYIEQRDRLYN-DNQVFAKYNVS 132

Query: 334 --EKGLGALNEAKRCLLKHNDSMYETL-------KSSVVEKIAEVDKYLEMKRNQSFR-- 382
             +       + ++ LL+   +    +       K+ V     +V    +++    F+  
Sbjct: 133 RLQP----YLKLRQALLELRPAKNVLIDGVLGSGKTWVA---LDVCLSYKVQCKMDFKIF 185

Query: 383 -------SSNTDIILPVEKWTLLSLARVLEGIEYKVGKFPFAANSRAKTNNDTDGFVKVL 435
                  +S   ++       L  L   ++            +N + + ++      ++L
Sbjct: 186 WLNLKNCNSPETVLEM-----LQKLLYQIDPNWTSRSDHS--SNIKLRIHSIQAELRRLL 238

Query: 436 GDKLTDKVLGV--HIIGPGIEYKVGKFPFAANSRAK---TNNDTDGFVKVLGDKLTDKVL 490
             K  +  L V  ++           F    N   K   T         +     T   L
Sbjct: 239 KSKPYENCLLVLLNVQNAKA---WNAF----NLSCKILLTTRFKQVTDFLSAATTTHISL 291

Query: 491 GVHIIGPAAGELINEAVLAMEYGASCEDVAR-TCHAHPTVCVEKNDTLGGTCLNVGCIPS 549
             H +     E+  +++L        +D+ R     +P                +  I  
Sbjct: 292 DHHSMTLTPDEV--KSLLLKYLDCRPQDLPREVLTTNP--------------RRLSIIA- 334

Query: 550 KALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGTKSAAVKALT-GGIAHLFKSNKA 608
              +            D  A     +   +N + +     +++  L       +F     
Sbjct: 335 -ESIR-----------DGLATWDNWK--HVNCDKLTTIIESSLNVLEPAEYRKMFDR--- 377

Query: 609 LKI------ITKQIILIL-----------II-----YRVLLKWWAQYIESTEDMDLAMKY 646
           L +      I   ++ ++           ++     Y ++ K   +   +     + ++ 
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES--TISIPSIYLEL 435

Query: 647 YEEARDYLSMVRVLCFLQDFSRAAELANASGDTA-------AAYHL--ARQYENSGQF-- 695
             +  +  ++ R +    +  +  +  +               +HL      E    F  
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495

Query: 696 ---D----EA--IHFYSVAGSCGNAVRLCGQLDAVES-IAS-----ELNVQSDQDLILKC 740
              D    E    H  +   + G+ +    QL   +  I       E  V +  D + K 
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI 555

Query: 741 ASYFARREHHDRAVQ---MYAIARRYDQALSLIQ 771
                  ++ D  ++   M      +++A   +Q
Sbjct: 556 EENLICSKYTD-LLRIALMAEDEAIFEEAHKQVQ 588

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565

 Score = 82.6 bits (205), Expect = 2e-16
 Identities = 53/233 (22%), Positives = 94/233 (40%), Gaps = 47/233 (20%)

Query: 857  VTQLNGHGKITGPNTVTVI-KSDGSTEEVKTKNILIATGSE--VTPFPGIEV-------- 905
            V  ++   K      VTV    DGS  +     +L++ G+   V P PG++         
Sbjct: 81   VVAIDRAAK-----LVTVRRLLDGSEYQESYDTLLLSPGAAPIVPPIPGVDNPLTHSLRN 135

Query: 906  --DEETIVSSTGALSLKKGSVWG-------------RLGAEVTAIEFMNAIGGMGIDGEV 950
              D + I+ +    +++  +V G              LG + T +E  + +    +D E+
Sbjct: 136  IPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMT-PVDREM 194

Query: 951  AKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDP-------------TKKEEL 997
            A    + +  QG+  +LGT ++  S        +    +D              +  E L
Sbjct: 195  AGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELL 254

Query: 998  SCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCI 1050
              D L++ +G RP T  L   + G+   E G + VN+  QT  P I+A+GD +
Sbjct: 255  ETDLLIMAIGVRPET-QL-ARDAGLAIGELGGIKVNAMMQTSDPAIYAVGDAV 305

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 367

 Score = 79.1 bits (196), Expect = 1e-15
 Identities = 41/215 (19%), Positives = 80/215 (37%), Gaps = 52/215 (24%)

Query: 890  LIATGSE--VTPFPGIE--------VDEETIVSSTGALSLKKGSVWG------------- 926
            ++ATG+        G E         D + I  S    +  +  + G             
Sbjct: 106  VLATGARAREPQIKGKEYLLTLRTIFDADRIKES--IENSGEAIIIGGGFIGLELAGNLA 163

Query: 927  RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIE 986
              G  V  I        +G+D E++   + +L + G++F L +++  A++ G        
Sbjct: 164  EAGYHVKLIHRGAMF--LGLDEELSNMIKDMLEETGVKFFLNSELLEANEEG-------- 213

Query: 987  NVKDPTKKEELSCDALLVCVGRRPYTHNLGL-EEIGIEKDEKGRVPVNSRFQTVIPNIFA 1045
             + +      +     +  +G  P   N+ L    GI     G + ++  F+T   +++A
Sbjct: 214  VLTN---SGFIEGKVKICAIGIVP---NVDLARRSGIHTGR-G-ILIDDNFRTSAKDVYA 265

Query: 1046 IGDC------IHGPMLAHKAEDEGIVCVEGIAGDK 1074
            IGDC      I G   A  A ++  V  + + G+ 
Sbjct: 266  IGDCAEYSGIIAG--TAKAAMEQARVLADILKGEP 298

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Length = 385

 Score = 75.7 bits (187), Expect = 2e-14
 Identities = 40/253 (15%), Positives = 79/253 (31%), Gaps = 59/253 (23%)

Query: 852  FKSNKVTQLNGHGKITGPNTV--TVIKSDGSTEEVKTKNILIATGSE--VTPFPGIE--- 904
            ++ N +  +      T  +     V    G  E++K + ++IA+GS       P  +   
Sbjct: 72   YEKNNIKVITSE-FATSIDPNNKLVTLKSG--EKIKYEKLIIASGSIANKIKVPHADEIF 128

Query: 905  -----VDEETIVSSTGALSLKKGSVWG-------------RLGAEVTAIEFMNAIGGMGI 946
                  D   I       +  K  + G               G   +    +       +
Sbjct: 129  SLYSYDDALKIKDE--CKNKGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQL 186

Query: 947  DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCV 1006
            D +     +  L + G++    +      + G                + +    ++  V
Sbjct: 187  DRDGGLFLKDKLDRLGIKIYTNSNFE---EMG----------------DLIRSSCVITAV 227

Query: 1007 GRRPYTHNLGL-EEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDC--IHGPMLAH--KAED 1061
            G +P   NL   ++  I    +G + VN   +T I +I+A GD    +G        A  
Sbjct: 228  GVKP---NLDFIKDTEIASK-RG-ILVNDHMETSIKDIYACGDVAEFYGKNPGLINIANK 282

Query: 1062 EGIVCVEGIAGDK 1074
            +G V      G+ 
Sbjct: 283  QGEVAGLNACGED 295

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* Length = 384

 Score = 73.8 bits (182), Expect = 6e-14
 Identities = 37/186 (19%), Positives = 67/186 (36%), Gaps = 39/186 (20%)

Query: 890  LIATGSE--VTPFPGIEV----------DEETIVSSTGALSLKKGSVWG----------- 926
            ++A G+E    P  G             D      +  A   ++  + G           
Sbjct: 106  VLAWGAEPIRVPVEGDAQDALYPINDLEDYARFRQA--AAGKRRVLLLGAGLIGCEFAND 163

Query: 927  --RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVT 984
                G ++  +     +    +    AK  Q  L   G++F LG  +    K+G+ +   
Sbjct: 164  LSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAH 223

Query: 985  IENVKDPTKKEELSCDALLVCVGRRPYTHNLGL-EEIGIEKDEKGRVPVNSRFQTVIPNI 1043
            + +       E + CD ++  VG RP      L    G+  +  G + V+   +T   NI
Sbjct: 224  LSD------GEVIPCDLVVSAVGLRP---RTELAFAAGLAVNR-G-IVVDRSLRTSHANI 272

Query: 1044 FAIGDC 1049
            +A+GDC
Sbjct: 273  YALGDC 278

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335

 Score = 71.1 bits (175), Expect = 4e-13
 Identities = 33/202 (16%), Positives = 63/202 (31%), Gaps = 34/202 (16%)

Query: 874  VIKSDGSTEEVKTKNILIATGSEVT-----PFPGIEVDEET----IVSSTGALSLKKGSV 924
             + +         K ++IA G           PG    E       V S      K+  +
Sbjct: 99   KVTTSQGNA-YTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYYAVKSKAEFQGKRVLI 157

Query: 925  WG-------------RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQG-MQFKLGTK 970
             G                  +T I             +   +      ++G ++     +
Sbjct: 158  VGGGDSAVDWALNLLDTARRITLIHRRPQFRAHEASVKELMK----AHEEGRLEVLTPYE 213

Query: 971  VTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLG-LEEIGIEKDEKGR 1029
            +             + + +   ++  L  DA+L+  G   Y   LG L   G+   EK +
Sbjct: 214  LRRVEGDERVRWAVVFHNQT-QEELALEVDAVLILAG---YITKLGPLANWGLA-LEKNK 268

Query: 1030 VPVNSRFQTVIPNIFAIGDCIH 1051
            + V++   T IP ++A GD + 
Sbjct: 269  IKVDTTMATSIPGVYACGDIVT 290

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* Length = 493

 Score = 70.2 bits (172), Expect = 2e-12
 Identities = 46/242 (19%), Positives = 79/242 (32%), Gaps = 54/242 (22%)

Query: 873  TVIKSDGSTEEVKTKNILIATGSE-----VTPFPGIEVDEETIV--SSTGALSLKKGSVW 925
             V  +DGS   +  +  LIATG            G EV   T +        SL+K S  
Sbjct: 122  MVKLNDGSQ--ITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISRE 179

Query: 926  GR------------------------LGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQ 961
             +                        LG EV  +       G  +   ++      + ++
Sbjct: 180  VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRRE 239

Query: 962  GMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGL-EEI 1020
            G++      V     S   + + +++        ++  D ++  VG  P   N+ L +  
Sbjct: 240  GVKVMPNAIVQSVGVSSGKLLIKLKD------GRKVETDHIVAAVGLEP---NVELAKTG 290

Query: 1021 GIEKDEKGR-VPVNSRFQTVIPNIFAIGDC--IHGPMLAHK-------AEDEGIVCVEGI 1070
            G+E D       VN+  Q    NI+  GD    +   L  +       A   G +  E +
Sbjct: 291  GLEIDSDFGGFRVNAELQAR-SNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENM 349

Query: 1071 AG 1072
             G
Sbjct: 350  TG 351

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Length = 332

 Score = 66.8 bits (164), Expect = 8e-12
 Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 6/104 (5%)

Query: 951  AKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRP 1010
             +     L    +                   + +E VK   +KE L  D L+V  G   
Sbjct: 192  HEHSVENLHASKVNVLTPFVPAELIGEDKIEQLVLEEVKG-DRKEILEIDDLIVNYG--- 247

Query: 1011 YTHNLG-LEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGP 1053
            +  +LG ++  G++  EK  + V S  +T I   FA GD     
Sbjct: 248  FVSSLGPIKNWGLD-IEKNSIVVKSTMETNIEGFFAAGDICTYE 290

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* Length = 431

 Score = 67.2 bits (165), Expect = 1e-11
 Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 9/124 (7%)

Query: 927  RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIE 986
            +    VT ++    +        V+  ++ +  + G+  + GT+V G   S D   VT  
Sbjct: 170  KANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAV 229

Query: 987  NVKDPTKKEELSCDALLVCVGRRPYTHNLGL-EEIGIEKDEKGRVPVNSRFQTVIPNIFA 1045
              +D      L  D ++  +G  P   N  L    G++ D    + +N   QT  P I A
Sbjct: 230  LCED---GTRLPADLVIAGIGLIP---NCELASAAGLQVD--NGIVINEHMQTSDPLIMA 281

Query: 1046 IGDC 1049
            +GDC
Sbjct: 282  VGDC 285

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} Length = 410

 Score = 65.7 bits (161), Expect = 3e-11
 Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 12/124 (9%)

Query: 927  RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIE 986
            +LG  VT +E  + +    +   +    + +L + G+Q +LGT V G S  G    V   
Sbjct: 164  KLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMAS 223

Query: 987  NVKDPTKKEELSCDALLVCVGRRPYTHNLGL-EEIGIEKDEKGRVPVNSRFQTVIPNIFA 1045
            +            D+ L+CVG  P      L  + G+  D    V V+    T+   +FA
Sbjct: 224  DG------RSFVADSALICVGAEP---ADQLARQAGLACD--RGVIVDHCGATLAKGVFA 272

Query: 1046 IGDC 1049
            +GD 
Sbjct: 273  VGDV 276

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Length = 404

 Score = 64.9 bits (159), Expect = 5e-11
 Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 13/125 (10%)

Query: 927  RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNIT-VTI 985
              G EV  +E    +    +  E++  F       G++   G + T  +  GD +T V +
Sbjct: 163  AKGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVL 222

Query: 986  ENVKDPTKKEELSCDALLVCVGRRPYTHNLGL-EEIGIEKDEKGRVPVNSRFQTVIPNIF 1044
             +         L CD ++V VG  P   N+ +    G+       + V+ +  T  P+I 
Sbjct: 223  SD------GNTLPCDLVVVGVGVIP---NVEIAAAAGLPTA--AGIIVDQQLLTSDPHIS 271

Query: 1045 AIGDC 1049
            AIGDC
Sbjct: 272  AIGDC 276

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Length = 415

 Score = 64.5 bits (158), Expect = 7e-11
 Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 13/125 (10%)

Query: 927  RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNIT-VTI 985
            + G  VT +E +  +        +++ +Q      G+  + G  +      G  +T V +
Sbjct: 173  KFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRM 232

Query: 986  ENVKDPTKKEELSCDALLVCVGRRPYTHNLGL-EEIGIEKDEKGRVPVNSRFQTVIPNIF 1044
            ++         +  D ++V +G  P    +G     G        V V+   +T + +++
Sbjct: 233  QD------GSVIPADIVIVGIGIVP---CVGALISAGASGG--NGVDVDEFCRTSLTDVY 281

Query: 1045 AIGDC 1049
            AIGDC
Sbjct: 282  AIGDC 286

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* Length = 408

 Score = 63.0 bits (154), Expect = 2e-10
 Identities = 36/201 (17%), Positives = 71/201 (35%), Gaps = 41/201 (20%)

Query: 873  TVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIV---SSTGALSLKKGSVWGR-- 927
            TV  SDG T  +    +++ATG+     P ++     +    +   A  ++ G       
Sbjct: 91   TVALSDGRT--LPYGTLVLATGAAPRALPTLQGATMPVHTLRTLEDARRIQAGLRPQSRL 148

Query: 928  ------------------LGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGT 969
                               G  V+ +E    +        +A    R    QG+  +   
Sbjct: 149  LIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFER 208

Query: 970  KVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGL-EEIGIEKDEKG 1028
             VTG+        V +++         ++ D ++V +G      N  L    G+  D   
Sbjct: 209  SVTGSVDGV----VLLDD------GTRIAADMVVVGIGVLA---NDALARAAGLACD--D 253

Query: 1029 RVPVNSRFQTVIPNIFAIGDC 1049
             + V++  +T  P+++A+GD 
Sbjct: 254  GIFVDAYGRTTCPDVYALGDV 274

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Length = 360

 Score = 62.7 bits (153), Expect = 2e-10
 Identities = 40/196 (20%), Positives = 71/196 (36%), Gaps = 32/196 (16%)

Query: 882  EEVKTKNILIATGS---EVTPFPGIEVDEET-------IVSSTGALSLKKGSVWG----- 926
               +++ +LIA G    E    P +   +          V S      K+  + G     
Sbjct: 116  NVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYAVKSVEDFKGKRVVIVGGGDSA 175

Query: 927  --------RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSG 978
                    +  A VT +   +   G G   + A + +R      +   L T+V    +S 
Sbjct: 176  LDWTVGLIKNAASVTLVHRGHEFQGHG---KTAHEVERARANGTIDVYLETEVASIEESN 232

Query: 979  DNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLG-LEEIGIEKDEKGRVPVNSRFQ 1037
              +T       D   K  +  D LL+ +G   +  NLG L    +E   +  + V+S  +
Sbjct: 233  GVLTRVHLRSSD-GSKWTVEADRLLILIG---FKSNLGPLARWDLE-LYENALVVDSHMK 287

Query: 1038 TVIPNIFAIGDCIHGP 1053
            T +  ++A GD  + P
Sbjct: 288  TSVDGLYAAGDIAYYP 303

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409

 Score = 60.1 bits (146), Expect = 2e-09
 Identities = 19/143 (13%), Positives = 46/143 (32%), Gaps = 16/143 (11%)

Query: 935  IEFMNAIGGM-GIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTK 993
            +   +    +  +     K    I  + G++     K+           +    + D  K
Sbjct: 204  VTVFSPGEYLSDLSPNSRKAVASIYNQLGIKLVHNFKIKE---------IREHEIVD-EK 253

Query: 994  KEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTV-IPNIFAIGDC--I 1050
               +  D  ++        +           D+ G +P +    ++   N++A+GD   +
Sbjct: 254  GNTIPADITILLPPYTG--NPALKNSTPDLVDDGGFIPTDLNMVSIKYDNVYAVGDANSM 311

Query: 1051 HGPMLAHKAEDEGIVCVEGIAGD 1073
              P L + A   G +  + +A  
Sbjct: 312  TVPKLGYLAVMTGRIAAQHLANR 334

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437

 Score = 56.7 bits (137), Expect = 3e-08
 Identities = 32/158 (20%), Positives = 51/158 (32%), Gaps = 21/158 (13%)

Query: 930  AEVTAIEFMNAIGGMGIDG--EVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIEN 987
               T I     IG +GI G  +      + L ++G++     KVT      + + VT  +
Sbjct: 188  PSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIEAYTNCKVTKVE--DNKMYVTQVD 245

Query: 988  VKDPTKKE-ELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQ-TVIPNIFA 1045
             K  T KE  L     ++      +     +  +    +  G V V+   +     NIFA
Sbjct: 246  EKGETIKEMVLPVKFGMMIP---AFKGVPAVAGVEGLCNPGGFVLVDEHQRSKKYANIFA 302

Query: 1046 IGDCIH------------GPMLAHKAEDEGIVCVEGIA 1071
             G  I              P   +  E      V  I 
Sbjct: 303  AGIAIAIPPVETTPVPTGAPKTGYMIESMVSAAVHNIK 340

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} Length = 319

 Score = 54.4 bits (132), Expect = 8e-08
 Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 11/128 (8%)

Query: 927  RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNIT-VTI 985
                 VT IE+M               + + + K+ + + +  +VT     G  +T V  
Sbjct: 176  EYVKNVTIIEYMPKYMC-------ENAYVQEIKKRNIPYIMNAQVTEIVGDGKKVTGVKY 228

Query: 986  ENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFA 1045
            ++     +K  +  D + + VG  P T    L++ G++ DE+G + V+SR +T +P ++A
Sbjct: 229  KDRTTGEEKL-IETDGVFIYVGLIPQTS--FLKDSGVKLDERGYIVVDSRQRTSVPGVYA 285

Query: 1046 IGDCIHGP 1053
             GD   G 
Sbjct: 286  AGDVTSGN 293

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304

 Score = 52.9 bits (128), Expect = 2e-07
 Identities = 25/224 (11%), Positives = 59/224 (26%), Gaps = 44/224 (19%)

Query: 852  FKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGS--EVTPFPGIE----- 904
            +    V  +             ++  D    +   + +L+ATG   E    P +      
Sbjct: 78   YYEKTVVMITK----QSTGLFEIVTKDH--TKYLAERVLLATGMQEEFPSIPNVREYYGK 131

Query: 905  -------------VDEETIVSSTGA-LSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEV 950
                          D+  I+ S     +L    +      ++      N         E+
Sbjct: 132  SLFSCPYCDGWELKDQPLIIISENEDHTLHMTKLVYNWSTDLV--IATN-------GNEL 182

Query: 951  AKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRP 1010
            ++     L  + +   +   +      G+   +             +      +      
Sbjct: 183  SQTIMDELSNKNIPV-ITESIRTLQ--GEGGYLKKVEFHS---GLRIERAGGFIVPTFFR 236

Query: 1011 YTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPM 1054
               N  +E++G E    G   ++   +T   NI+  G+      
Sbjct: 237  --PNQFIEQLGCELQSNGTFVIDDFGRTSEKNIYLAGETTTQGP 278

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* Length = 323

 Score = 51.7 bits (125), Expect = 6e-07
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 12/80 (15%)

Query: 970  KVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGR 1029
             V           V +EN+K    KE L+ + + + +G  P T     +  GIE D  G 
Sbjct: 221  VVKQ---------VVVENLKTGEIKE-LNVNGVFIEIGFDPPTD--FAKSNGIETDTNGY 268

Query: 1030 VPVNSRFQTVIPNIFAIGDC 1049
            + V+   +T +P +FA GDC
Sbjct: 269  IKVDEWMRTSVPGVFAAGDC 288

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690

 Score = 50.0 bits (120), Expect = 4e-06
 Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 51/205 (24%)

Query: 889  ILIATGSE----------VTPFPGIEVDEETIVSSTGALSLKK------------GSVWG 926
            ++ ATG+            T  P    +   ++      + +                 G
Sbjct: 480  VITATGATWRTDGVARFHTTALPIA--EGMQVLGPDDLFAGRLPDGKKVVVYDDDHYYLG 537

Query: 927  --------RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSG 978
                    + G EV+ +     +     +     + QR L + G+       V      G
Sbjct: 538  GVVAELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVGAGG 597

Query: 979  DNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQT 1038
                VT+ +    + + EL CDA+++   R P      L    + + + G          
Sbjct: 598  ----VTVRDTYA-SIERELECDAVVMVTARLPRE---ELYLDLVARRDAGE--------- 640

Query: 1039 VIPNIFAIGDCIHGPMLAHKAEDEG 1063
             I ++  IGD    P     A   G
Sbjct: 641  -IASVRGIGDAW-APGTIAAAVWSG 663

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025

 Score = 49.8 bits (119), Expect = 5e-06
 Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 1/77 (1%)

Query: 995  EELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSR-FQTVIPNIFAIGDCIHGP 1053
              L  D ++   G       +      I+ +      V+    QT  P +FA GD +   
Sbjct: 427  VHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMA 486

Query: 1054 MLAHKAEDEGIVCVEGI 1070
                ++ ++G      I
Sbjct: 487  NTTVESVNDGKQASWYI 503

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729

 Score = 49.3 bits (118), Expect = 6e-06
 Identities = 32/241 (13%), Positives = 62/241 (25%), Gaps = 61/241 (25%)

Query: 857  VTQLNGHGKITGPNTVTVIKSDGSTEEVKTKN---ILIATGSE----------VTPFPGI 903
             TQ+    K    + + + +   + ++V       ++IATG+             P PG 
Sbjct: 448  ETQITKLLKKNKESQLALGQKPMTADDVLQYGADKVIIATGARWNTDGTNCLTHDPIPGA 507

Query: 904  EVDEETIVSSTGALSLKK------------GSVWG--------RLGAEVTAIEFMNAIGG 943
            +      ++    +  KK                           G EVT +  ++    
Sbjct: 508  DASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANY 567

Query: 944  MGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPT----------- 992
                        R L +  ++       +        I     +    T           
Sbjct: 568  -MHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTYRGPGVSPRDA 626

Query: 993  --KKEELSCDALLVCVGRRPYTHNL--GLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGD 1048
                  +  D+L++  GR      L   L+    E  E     +           + IGD
Sbjct: 627  NTSHRWIEFDSLVLVTGRHSEC-TLWNELKARESEWAENDIKGI-----------YLIGD 674

Query: 1049 C 1049
             
Sbjct: 675  A 675

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 27/201 (13%), Positives = 50/201 (24%), Gaps = 54/201 (26%)

Query: 643 AMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYH-LARQYENSGQFDEAIHF 701
           A  Y    R                  A LA+ +   + A   L   Y    +FDEA   
Sbjct: 5   AHDYALAERQA---------------QALLAHPAT-ASGARFMLGYVYAFMDRFDEARAS 48

Query: 702 YSVAGSCGNAVRLCGQLDAVESIASELN----VQSDQDLILKCASYFAR-----REHHDR 752
           +          +   +     +    L+    V+            F           + 
Sbjct: 49  FQ------ALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPED 102

Query: 753 AVQM----------YAIARRYDQALSLIQTKHVPLSEELADLLVPPESDDQRQV--VLNT 800
            +                     A    + K +  +++          DDQ  +      
Sbjct: 103 PLAASANAYEVATVALHFGDLAGARQEYE-KSLVYAQQA---------DDQVAIACAFRG 152

Query: 801 LGNCAAVQANYHLATKLFTQA 821
           LG+ A  + N   A + + +A
Sbjct: 153 LGDLAQQEKNLLEAQQHWLRA 173

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Length = 521

 Score = 46.5 bits (111), Expect = 4e-05
 Identities = 21/125 (16%), Positives = 49/125 (39%), Gaps = 13/125 (10%)

Query: 927  RLGAEVTAIEFMNAIGGMGIDGEVAKQFQ-RILGKQGMQFKLGTKVTGASKSGDNIT-VT 984
             +   VT +EF   +       +  +  Q ++   + +   L  + T     G  +  + 
Sbjct: 376  GIVEHVTLLEFAPEM-------KADQVLQDKVRSLKNVDIILNAQTTEVKGDGSKVVGLE 428

Query: 985  IENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIF 1044
              +         ++   + V +G  P T      E  +E++  G + ++++ +T +  +F
Sbjct: 429  YRDRVSGDIHS-VALAGIFVQIGLLPNT---HWLEGALERNRMGEIIIDAKCETSVKGVF 484

Query: 1045 AIGDC 1049
            A GDC
Sbjct: 485  AAGDC 489

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 46.1 bits (110), Expect = 5e-05
 Identities = 34/218 (15%), Positives = 66/218 (30%), Gaps = 49/218 (22%)

Query: 623 YRVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAA 682
           +           +  E +  A+++Y+E    L ++R L                G    A
Sbjct: 182 HLGQRNPGKFGDDVKEALTRAVEFYQEN---LKLMRDL-------------GDRGAQGRA 225

Query: 683 YH-LARQYENSGQFDEAIHFYSVAGSCGNAVRLCGQLDAVESIASELN----VQSDQDLI 737
              L   Y   G F  AI  +         +R+  +     +     +            
Sbjct: 226 CGNLGNTYYLLGDFQAAIEHH------QERLRIAREFGDRAAERRANSNLGNSHIFLGQF 279

Query: 738 LKCASYFAR-----REHHDRAVQ---------MYAIARRYDQALSLIQTKHVPLSEELAD 783
              A ++ R      E  +R V+          Y +   ++ A+     +H+ +++EL D
Sbjct: 280 EDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHN-RHLAIAQELGD 338

Query: 784 LLVPPESDDQRQVVLNTLGNCAAVQANYHLATKLFTQA 821
                E+         +LGN  +    +  A K   Q 
Sbjct: 339 --RIGEAR-----ACWSLGNAHSAIGGHERALKYAEQH 369

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 42.7 bits (101), Expect = 5e-04
 Identities = 36/241 (14%), Positives = 67/241 (27%), Gaps = 72/241 (29%)

Query: 639 DMDLAMKYYE------------EARDYLSMVRVLCFLQDFSRAAE-------LANASGD- 678
           D    + +++             +  Y  +     +L D+++A +       LA +  D 
Sbjct: 63  DCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDR 122

Query: 679 --TAAAYH-LARQYENSGQFDEAIHFYSVAGSCGNAVRLCGQLDAVESIASELN----VQ 731
              A +   L    +  G+FDEA             + L  QL    S    L     V 
Sbjct: 123 LGEAKSSGNLGNTLKVMGRFDEAAICCE------RHLTLARQLGDRLSEGRALYNLGNVY 176

Query: 732 SDQ----DLILKCASYFARREHHDRAVQMY----AIARR--------------------- 762
             +                +E   RAV+ Y     + R                      
Sbjct: 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLL 236

Query: 763 --YDQALSLIQTKHVPLSEELADLLVPPESDDQRQVVLNTLGNCAAVQANYHLATKLFTQ 820
             +  A+   Q + + ++ E  D     E         + LGN       +  A + + +
Sbjct: 237 GDFQAAIEHHQ-ERLRIAREFGDR--AAERR-----ANSNLGNSHIFLGQFEDAAEHYKR 288

Query: 821 A 821
            
Sbjct: 289 T 289

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456

 Score = 46.0 bits (110), Expect = 6e-05
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 995  EELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSR-FQTVIPNIFAIGDCIHG 1052
              +  D ++  +G  P       +E  ++    G + V+ R   T +  +FA GD + G
Sbjct: 363  FTVQADLVIKALGFEPEDLPNAFDEPELKVTRWGTLLVDHRTKMTNMDGVFAAGDIVRG 421

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 Length = 310

 Score = 45.2 bits (108), Expect = 6e-05
 Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 13/82 (15%)

Query: 968  GTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEK 1027
            G+KV G         +   +         +    + V +G  P T+ L   E  +E++  
Sbjct: 210  GSKVVG---------LEYRDRVSGDIHN-IELAGIFVQIGLLPNTNWL---EGAVERNRM 256

Query: 1028 GRVPVNSRFQTVIPNIFAIGDC 1049
            G + ++++ +T +  +FA GDC
Sbjct: 257  GEIIIDAKCETNVKGVFAAGDC 278

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} Length = 315

 Score = 44.4 bits (106), Expect = 1e-04
 Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 3/75 (4%)

Query: 978  GDNITVTIENVKDPT-KKEELSCDALLVCVGRRPYTHNLG--LEEIGIEKDEKGRVPVNS 1034
            GD + V    VK       +L+   +   VG       L     +     +E G+V V+ 
Sbjct: 211  GDKMGVAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDL 270

Query: 1035 RFQTVIPNIFAIGDC 1049
            + QT +  +FA GD 
Sbjct: 271  KMQTSVAGLFAAGDL 285

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 35/264 (13%), Positives = 73/264 (27%), Gaps = 44/264 (16%)

Query: 89  LQDFSRAAELA-NASGDTAAAYH-LARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQAL 146
             D ++   L+ +     A         +  +  F+EAI +Y        A+ L   +  
Sbjct: 7   EPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQ------YAIELDPNEP- 59

Query: 147 DDQLW-NLALSAGPSEQIEAA--TYLETIE--PDKAVLLYHKAGALHKA--LDLAFKLTL 199
               + N++     +  +E       + +E  PD +  L  +A A         A     
Sbjct: 60  --VFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDA----- 112

Query: 200 SNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPELLKSII 259
                   +  +  L  +GD +       + R      +    ++  +     +  +   
Sbjct: 113 --------MFDLSVLSLNGDFDGASIEPMLER-----NLNKQAMKVLNENLSKDEGRGSQ 159

Query: 260 SFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVV 319
              S          F        ++   NY+     L++A + L    D  Y      + 
Sbjct: 160 VLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLT 219

Query: 320 EKLAEVEIDEFGNYEKGLGALNEA 343
           +            Y   L A    
Sbjct: 220 KST--------DMYHSLLSANTVD 235

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* Length = 311

 Score = 44.0 bits (105), Expect = 2e-04
 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 12/84 (14%)

Query: 968  GTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLG--LEEIGIEKD 1025
             + V+          ++I+N     +K EL      + VG       L      +  + D
Sbjct: 209  ASGVSS---------LSIKNTAT-NEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCD 258

Query: 1026 EKGRVPVNSRFQTVIPNIFAIGDC 1049
            E G + V+   +T +  +FA GD 
Sbjct: 259  EYGSIVVDFSMKTNVQGLFAAGDI 282

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 41.9 bits (98), Expect = 6e-04
 Identities = 33/235 (14%), Positives = 80/235 (34%), Gaps = 23/235 (9%)

Query: 175 DKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKE 234
           ++A  L  +A  +++            +G  F  KA     K+G+ ++            
Sbjct: 34  EEAADLCVQAATIYRLRKELNL-----AGDSFL-KAADYQKKAGNEDEAG---------N 78

Query: 235 IYVMAAN-YLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGL 293
            YV A   +    +  +  + L++ I  ++        ANF     ++  ++  +Y K +
Sbjct: 79  TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAI 138

Query: 294 GALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGNYEKGLGALNEAKRCLLKHND- 352
                A     +          +    K A+++  + G Y +     ++  +  + +   
Sbjct: 139 DCYELAGEWYAQDQSVALS---NKCFIKCADLKALD-GQYIEASDIYSKLIKSSMGNRLS 194

Query: 353 --SMYETLKSSVVEKIAEVDKYLEMKRNQSFRSSNTDIILPVEKWTLLSLARVLE 405
             S+ +      + ++A  D     +  Q  +S + +     E   L SL   + 
Sbjct: 195 QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVN 249

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 42.5 bits (100), Expect = 7e-04
 Identities = 24/141 (17%), Positives = 43/141 (30%), Gaps = 15/141 (10%)

Query: 639 DMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEA 698
                       R   +  R         +A++ A        A  L    E++GQ + A
Sbjct: 53  HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA--PEHPGIALWLGHALEDAGQAEAA 110

Query: 699 IHFYSVA-----------GSCGNAVRLCGQLDAVESIASELNVQSDQDLILKCASYFARR 747
              Y+ A               N  R      A++ +++++     Q   +     FA  
Sbjct: 111 AAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG--VGAVEPFAFL 168

Query: 748 EHHDRAVQMYAIARRYDQALS 768
                A +  A AR   QA++
Sbjct: 169 SEDASAAEQLACARTRAQAIA 189

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 42.0 bits (98), Expect = 8e-04
 Identities = 21/128 (16%), Positives = 42/128 (32%), Gaps = 10/128 (7%)

Query: 10  GDIDRAIRMFEKA-----ETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTE 64
             ++RA  +  +      E       + L++     +  + + +   L       +   E
Sbjct: 213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE 272

Query: 65  DMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYH-LARQYENSGQFDE 123
             +L++ Y  +A   L   +     Q  +   +L      +   Y  L + YE  G   E
Sbjct: 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE----MSWLNYVLLGKVYEMKGMNRE 328

Query: 124 AIHFYSVA 131
           A   Y  A
Sbjct: 329 AADAYLTA 336

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	1074
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	100.0
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	99.98
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	99.98
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	99.97
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	99.97
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	99.97
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.97
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	99.97
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	99.97
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	99.97
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	99.97
1ojt_A	482	Surface protein; redox-active center, glycolysis,	99.97
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	99.97
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	99.97
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	99.97
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	99.97
1fec_A	490	Trypanothione reductase; redox-active center, oxid	99.97
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	99.97
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	99.97
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	99.97
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	99.97
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	99.97
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	99.97
4dna_A	463	Probable glutathione reductase; structural genomic	99.97
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	99.97
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	99.97
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	99.96
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.96
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	99.96
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	99.96
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	99.96
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	99.96
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	99.96
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	99.96
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	99.96
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.96
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	99.96
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	99.96
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	99.96
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	99.96
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	99.95
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	99.95
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	99.95
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	99.95
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	99.95
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	99.95
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.95
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	99.95
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	99.95
3r9u_A	315	Thioredoxin reductase; structural genomics, center	99.95
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	99.94
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	99.94
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	99.94
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	99.94
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	99.94
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.94
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	99.94
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.94
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.94
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	99.94
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	99.94
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	99.94
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	99.94
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	99.94
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.94
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	99.94
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	99.94
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	99.93
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	99.93
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.93
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.93
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.93
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	99.92
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	99.92
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	99.92
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	99.9
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	99.89
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.89
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	99.88
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	99.86
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	99.86
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	99.85
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	99.85
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.85
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.85
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	99.83
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	99.82
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.82
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.78
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.72
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.65
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	99.64
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.62
4dna_A	463	Probable glutathione reductase; structural genomic	99.62
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.6
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	99.59
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.59
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	99.59
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	99.58
1ojt_A	482	Surface protein; redox-active center, glycolysis,	99.55
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	99.54
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	99.54
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.53
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	99.53
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.51
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	99.5
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	99.5
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	99.5
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	99.5
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	99.5
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	99.49
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	99.49
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	99.49
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	99.48
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	99.48
1fec_A	490	Trypanothione reductase; redox-active center, oxid	99.48
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	99.47
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	99.45
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	99.45
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	99.45
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	99.44
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.43
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	99.42
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	99.39
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	99.39
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	99.36
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	99.36
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	99.35
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	99.33
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	99.28
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	99.27
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	99.18
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	99.17
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	99.17
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	99.15
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	99.15
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	99.13
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	99.11
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.09
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.05
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.01
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	98.97
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.93
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	98.88
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.87
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.82
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.82
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.81
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.79
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.79
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	98.74
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.71
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.71
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.69
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.68
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.67
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.61
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	98.59
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.56
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.55
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.52
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.52
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	98.48
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.47
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.46
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.42
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.4
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.39
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.38
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.37
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.36
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.34
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.34
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.33
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.32
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	98.31
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.3
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.3
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.24
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.2
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	98.19
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.17
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.16
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.1
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.09
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.08
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.08
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.06
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.03
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.03
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.01
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.01
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	97.99
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	97.97
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	97.96
2cul_A	232	Glucose-inhibited division protein A-related PROT	97.95
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	97.95
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	97.94
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	97.91
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	97.9
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	97.89
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	97.88
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	97.87
2bry_A	497	NEDD9 interacting protein with calponin homology a	97.85
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	97.85
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	97.85
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	97.84
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	97.82
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	97.8
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	97.79
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	97.79
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	97.79
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.78
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	97.77
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	97.77
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	97.75
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	97.74
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	97.73
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	97.72
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	97.66
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	97.65
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	97.62
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	97.6
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	97.55
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	97.55
3dme_A	369	Conserved exported protein; structural genomics, P	97.54
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	97.52
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	97.5
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	97.47
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	97.44
4g1t_A	472	Interferon-induced protein with tetratricopeptide	97.43
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	97.41
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	97.4
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	97.4
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	97.36
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	97.35
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	97.33
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	97.33
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.32
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	97.31
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	97.31
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	97.3
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	97.3
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	97.3
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	97.29
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	97.28
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	97.28
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	97.28
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	97.28
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	97.27
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	97.24
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.22
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	97.21
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.2
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	97.19
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.19
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	97.19
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	97.18
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.17
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	97.15
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	97.13
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	97.13
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	97.11
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.08
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	97.07
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	97.07
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	97.07
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	97.05
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	97.04
3atr_A	453	Conserved archaeal protein; saturating double bond	97.03
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	97.02
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	97.02
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	97.0
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.0
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	96.99
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	96.99
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	96.99
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	96.96
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	96.95
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	96.91
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	96.91
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	96.9
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	96.9
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	96.89
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	96.88
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	96.88
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	96.86
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	96.86
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	96.86
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	96.86
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	96.83
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	96.81
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	96.81
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	96.81
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	96.81
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	96.8
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	96.8
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	96.77
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	96.77
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	96.77
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	96.74
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	96.73
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	96.73
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	96.71
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	96.7
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	96.69
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	96.68
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	96.67
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	96.64
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	96.64
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	96.63
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	96.6
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	96.6
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	96.59
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	96.58
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	96.57
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	96.57
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	96.57
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	96.57
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	96.54
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	96.51
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	96.51
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	96.5
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	96.49
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	96.49
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	96.47
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	96.46
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	96.46
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	96.46
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	96.45
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	96.44
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	96.44
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	96.41
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	96.41
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	96.4
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	96.35
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	96.35
3r9u_A	315	Thioredoxin reductase; structural genomics, center	96.34
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	96.33
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	96.27
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	96.26
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	96.23
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	96.23
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	96.23
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	96.22
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	96.22
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	96.2
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	96.16
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	96.14
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	96.13
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	96.12
3k9i_A	117	BH0479 protein; putative protein binding protein,	96.11
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	96.09
4hb9_A	412	Similarities with probable monooxygenase; flavin,	96.09
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	96.08
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	96.06
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	96.03
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	95.98
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	95.97
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	95.96
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	95.93
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	95.91
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	95.91
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	95.9
2pm7_A	399	Protein WEB1, protein transport protein SEC31; bet	95.9
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	95.87
2bry_A	497	NEDD9 interacting protein with calponin homology a	95.87
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	95.87
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	95.86
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	95.85
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	95.83
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	95.8
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	95.8
1klx_A	138	Cysteine rich protein B; structural genomics, heli	95.75
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	95.75
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	95.72
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	95.71
1klx_A	138	Cysteine rich protein B; structural genomics, heli	95.71
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	95.64
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	95.63
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	95.62
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	95.6
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	95.59
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	95.58
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	95.57
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	95.51
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	95.49
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	95.42
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	95.39
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	95.39
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	95.37
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	95.36
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	95.34
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	95.32
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	95.3
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	95.27
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	95.22
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	95.2
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	95.18
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	95.14
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	95.14
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	95.12
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	95.12
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	95.1
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	95.09
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	95.07
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	95.05
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	95.04
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	95.03
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	95.02
2qx5_A	661	Nucleoporin NIC96; mRNA transport, nuclear pore co	94.95
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	94.92
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	94.85
2kat_A	115	Uncharacterized protein; NESG, structure, structur	94.81
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	94.8
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	94.8
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	94.77
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	94.76
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	94.72
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	94.7
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	94.61
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	94.52
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	94.52
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	94.49
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	94.37
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	94.3
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	94.18
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	94.04
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	94.0
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	93.96
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	93.92
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	93.87
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	93.86
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	93.85
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	93.84
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	93.7
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	93.57
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	93.57
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	93.53
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	93.43
2l6j_A	111	TPR repeat-containing protein associated with HSP;	93.42
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	93.41
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	93.39
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	93.38
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	93.23
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	93.18
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	93.18
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	93.16
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	93.14
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	93.09
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	92.87
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	92.76
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	92.73
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	92.44
2pm7_A	399	Protein WEB1, protein transport protein SEC31; bet	92.38
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	92.06
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	92.03
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	91.98
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	91.92
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	91.9
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	91.88
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	91.64
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	91.59
3mzk_B	441	Protein transport protein SEC16; alpha-helical-sta	91.56
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	91.49
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	91.49
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	91.14
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	91.04
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	91.02
2l6j_A	111	TPR repeat-containing protein associated with HSP;	90.87
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	90.65
4fk1_A	304	Putative thioredoxin reductase; structural genomic	90.48
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	90.3
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	90.25
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	89.89
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	89.71
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	89.51
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	89.46
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	89.33
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	89.33
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	88.86
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	88.64
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	88.21
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	88.17
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	88.06
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	88.05
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	87.98
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	87.72
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	87.57
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	87.45
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	87.11
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	86.64
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	86.57
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	86.52
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	86.48
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	86.41
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	86.29
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	86.28
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	86.28

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=100.00  E-value=4e-32  Score=325.70  Aligned_cols=278  Identities=46%  Similarity=0.731  Sum_probs=234.1

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccc-------------------------------------hh
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLN-------------------------------------LE  831 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~-------------------------------------~~  831 (1074)
                      +.+|+||||||+|++||+.|++     +++|+.+..||...                                     +.
T Consensus        25 ~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  104 (491)
T 3urh_A           25 AYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVANPKLNLQ  104 (491)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCCCEECHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCCCccCHH
Confidence            4469999999999999999998     78898777766421                                     11


Q ss_pred             hhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCC--CCCcc
Q psy14927        832 TMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIE--VDEET  909 (1074)
Q Consensus       832 ~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~--~~~~~  909 (1074)
                      .+..........+...+...+...+|+++.|++..+++..+.|.+.+|+..++.||+||||||++|+++||++  .....
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~ipg~~~~~~~~~  184 (491)
T 3urh_A          105 KMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDVAGIPGVEVAFDEKT  184 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECSSSEEEEECTTSCEEEEECSEEEECCCEECCCBTTBCCCCCSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEccCCCCCCCCCcccccCCee
Confidence            1222222233334444566778889999999999999999999888876678999999999999988888876  34567


Q ss_pred             eechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEE
Q psy14927        910 IVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVT  972 (1074)
Q Consensus       910 v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~  972 (1074)
                      ++++.++.....                 |..|.+.|.+||++++.++++ +.+++++.+.+.+.+++.||++++++.+.
T Consensus       185 ~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-~~~d~~~~~~l~~~l~~~gV~v~~~~~v~  263 (491)
T 3urh_A          185 IVSSTGALALEKVPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTIL-GGMDGEVAKQLQRMLTKQGIDFKLGAKVT  263 (491)
T ss_dssp             EECHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS-SSSCHHHHHHHHHHHHHTTCEEECSEEEE
T ss_pred             EEehhHhhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecccccc-ccCCHHHHHHHHHHHHhCCCEEEECCeEE
Confidence            888888776543                 788889999999999999998 78999999999999999999999999999


Q ss_pred             EEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCC
Q psy14927        973 GASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHG 1052 (1074)
Q Consensus       973 ~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~ 1052 (1074)
                      ++..+++++.+.+.+.. +|+..++++|.||+|+|++|+++++++...|++++++|+|.||++++|++|||||+|||++.
T Consensus       264 ~i~~~~~~~~v~~~~~~-~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~  342 (491)
T 3urh_A          264 GAVKSGDGAKVTFEPVK-GGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVVRG  342 (491)
T ss_dssp             EEEEETTEEEEEEEETT-SCCCEEEEESEEEECCCCEECCTTSCHHHHTCCBCTTSCBCCCTTCBCSSTTEEECGGGSSS
T ss_pred             EEEEeCCEEEEEEEecC-CCceEEEEcCEEEEeeCCccCCCccCchhcCceECCCCCEeECCCCCCCCCCEEEEEecCCC
Confidence            99988777778777522 25457899999999999999999877788899999999999999999999999999999998


Q ss_pred             CCcHHHHHHHHHHHHHHhhCC
Q psy14927       1053 PMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1053 ~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      |+++..|..+|+.+|.+|+|.
T Consensus       343 ~~~~~~A~~~g~~aa~~i~g~  363 (491)
T 3urh_A          343 PMLAHKAEDEGVAVAEIIAGQ  363 (491)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTS
T ss_pred             ccchhHHHHHHHHHHHHHcCC
Confidence            999999999999999999975

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=99.98  E-value=2.3e-31  Score=317.70  Aligned_cols=276  Identities=62%  Similarity=0.904  Sum_probs=222.3

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccch--------------------------------------
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNL--------------------------------------  830 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~--------------------------------------  830 (1074)
                      +.+|+||||||+|+++|..|++     +++|+.+..|+....                                      
T Consensus         6 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   85 (474)
T 1zmd_A            6 DADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSEVRLNL   85 (474)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEESCEEECH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccCCCccCH
Confidence            3459999999999999999998     788888766664211                                      


Q ss_pred             hhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCC--CCCCCCCCc
Q psy14927        831 ETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTP--FPGIEVDEE  908 (1074)
Q Consensus       831 ~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~--ipgi~~~~~  908 (1074)
                      ..+..+.....+.+...+...+.+.||+++.|+++.++++.+.|.+.+|+..++.||+||||||++|..  +||+  +..
T Consensus        86 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~gg~~~~~~d~lViAtGs~p~~p~i~g~--~~~  163 (474)
T 1zmd_A           86 DKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEVTPFPGITI--DED  163 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECCCTTCCC--CSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEecCCCcEEEEeCEEEECCCCCCCCCCCCCC--CcC
Confidence            111111111122233334667778899999999888998888888777433579999999999998743  3343  233


Q ss_pred             ceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCC-CCCHHHHHHHHHHHHhCCCEEEeCce
Q psy14927        909 TIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGM-GIDGEVAKQFQRILGKQGMQFKLGTK  970 (1074)
Q Consensus       909 ~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~-~~~~~~~~~~~~~l~~~gV~i~~~~~  970 (1074)
                      .++++++++.+..                 |..+.++|.+||++++.++++ + .+++++.+.+.+.+++.||++++++.
T Consensus       164 ~v~t~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-~~~~~~~~~~~l~~~l~~~Gv~i~~~~~  242 (474)
T 1zmd_A          164 TIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVG-GVGIDMEISKNFQRILQKQGFKFKLNTK  242 (474)
T ss_dssp             SEECHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-CSSCCHHHHHHHHHHHHHTTCEEECSEE
T ss_pred             cEEcHHHHhhccccCceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccC-CcccCHHHHHHHHHHHHHCCCEEEeCce
Confidence            5788888876543                 888889999999999999998 6 89999999999999999999999999


Q ss_pred             EEEEEecCCe-EEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEeccc
Q psy14927        971 VTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDC 1049 (1074)
Q Consensus       971 v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~ 1049 (1074)
                      |.++..++++ +.+++.+.. ++.+.++++|.||+|+|++|+++++.++.+|++++++|+|.||++++|+.|+|||+|||
T Consensus       243 v~~i~~~~~~~~~v~~~~~~-~~~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyA~GD~  321 (474)
T 1zmd_A          243 VTGATKKSDGKIDVSIEAAS-GGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDV  321 (474)
T ss_dssp             EEEEEECTTSCEEEEEEETT-SCCCEEEEESEEEECSCEEECCTTSSHHHHTCCCCTTSCCCCCTTCBCSSTTEEECGGG
T ss_pred             EEEEEEcCCceEEEEEEecC-CCCceEEEcCEEEECcCCCcCCCcCCchhcCCccCCCCCEEECcCCccCCCCEEEeeec
Confidence            9999987655 666654311 24467899999999999999999866678899999999999999999999999999999


Q ss_pred             CCCCCcHHHHHHHHHHHHHHhhCC
Q psy14927       1050 IHGPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1050 ~~~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      +..|++++.|..||+.||.||++.
T Consensus       322 ~~~~~~~~~A~~~g~~aa~~i~~~  345 (474)
T 1zmd_A          322 VAGPMLAHKAEDEGIICVEGMAGG  345 (474)
T ss_dssp             SSSCCCHHHHHHHHHHHHHHHTTC
T ss_pred             CCCCccHHHHHHHHHHHHHHhcCC
Confidence            998889999999999999999974

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=99.98  E-value=2e-31  Score=317.74  Aligned_cols=274  Identities=43%  Similarity=0.678  Sum_probs=221.4

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccccccccch--------------------------------------h
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNL--------------------------------------E  831 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~--------------------------------------~  831 (1074)
                      .+|+||||||+|+++|..|++     +++|+.+..|+....                                      .
T Consensus         3 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   82 (468)
T 2qae_A            3 YDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVTMDSA   82 (468)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCEECHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCccCHH
Confidence            359999999999999999998     788888766654211                                      1


Q ss_pred             hhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCC--CCCCCCCCcc
Q psy14927        832 TMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTP--FPGIEVDEET  909 (1074)
Q Consensus       832 ~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~--ipgi~~~~~~  909 (1074)
                      .+..+.....+.+...+...+.+.||+++.|+++.++++.+.|.+.+|...++.||+||||||++|..  +|++  +...
T Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~~~G~~~~~~~d~lviAtG~~p~~p~~~g~--~~~~  160 (468)
T 2qae_A           83 KMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSFETAHSIRVNGLDGKQEMLETKKTIIATGSEPTELPFLPF--DEKV  160 (468)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECCBTTBCC--CSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEecCCceEEEEcCEEEECCCCCcCCCCCCCC--CcCc
Confidence            11111111222233334566777899999999888999988888877755679999999999998743  3343  2336


Q ss_pred             eechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHH-HhCCCEEEeCceE
Q psy14927        910 IVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRIL-GKQGMQFKLGTKV  971 (1074)
Q Consensus       910 v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l-~~~gV~i~~~~~v  971 (1074)
                      ++++++++.+..                 |..+.+.|.+||++++.++++ +.+++++.+.+.+.+ ++.||+++++++|
T Consensus       161 v~t~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-~~~d~~~~~~l~~~l~~~~gv~i~~~~~v  239 (468)
T 2qae_A          161 VLSSTGALALPRVPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCA-PTLDEDVTNALVGALAKNEKMKFMTSTKV  239 (468)
T ss_dssp             EECHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-TTSCHHHHHHHHHHHHHHTCCEEECSCEE
T ss_pred             eechHHHhhcccCCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCccc-ccCCHHHHHHHHHHHhhcCCcEEEeCCEE
Confidence            888888877633                 888889999999999999998 789999999999999 9999999999999


Q ss_pred             EEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCC
Q psy14927        972 TGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIH 1051 (1074)
Q Consensus       972 ~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~ 1051 (1074)
                      .+++.+++++.+.+.+.  +|++.++++|.||+|+|++|+++++.++.+|++++++|+|.||++++|+.|||||+|||+.
T Consensus       240 ~~i~~~~~~~~v~~~~~--~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~  317 (468)
T 2qae_A          240 VGGTNNGDSVSLEVEGK--NGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFETSIPDVYAIGDVVD  317 (468)
T ss_dssp             EEEEECSSSEEEEEECC-----EEEEEESEEEECSCEEECCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGBS
T ss_pred             EEEEEcCCeEEEEEEcC--CCceEEEECCEEEECCCcccCCCCCCchhcCCccCCCCCEeECCCcccCCCCEEEeeccCC
Confidence            99998766666776521  1434789999999999999999987667889999989999999999999999999999999


Q ss_pred             -CCCcHHHHHHHHHHHHHHhhCC
Q psy14927       1052 -GPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1052 -~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                       .|++++.|..||+.||.||++.
T Consensus       318 ~~~~~~~~A~~~g~~aa~~i~~~  340 (468)
T 2qae_A          318 KGPMLAHKAEDEGVACAEILAGK  340 (468)
T ss_dssp             SSCSCHHHHHHHHHHHHHHHTTC
T ss_pred             CCCccHhHHHHHHHHHHHHHcCC
Confidence             8889999999999999999874

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.97  E-value=3.5e-31  Score=316.00  Aligned_cols=276  Identities=46%  Similarity=0.705  Sum_probs=221.8

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccch-------------------------------------h
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNL-------------------------------------E  831 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~-------------------------------------~  831 (1074)
                      +.+|+||||||+|+++|..|++     +++|+.+..|+....                                     .
T Consensus         6 ~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   85 (470)
T 1dxl_A            6 ENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDLA   85 (470)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCCccCHH
Confidence            4459999999999999999998     788888766654211                                     1


Q ss_pred             hhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCC--CCCCCCCCcc
Q psy14927        832 TMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTP--FPGIEVDEET  909 (1074)
Q Consensus       832 ~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~--ipgi~~~~~~  909 (1074)
                      .+..+.......+...+...+.+.||+++.|+++.++++.+.|.+.+|...+++||+||||||++|..  +|++  +...
T Consensus        86 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~~p~~~g~--~~~~  163 (470)
T 1dxl_A           86 AMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVTI--DEKK  163 (470)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCEEECCBTTBCC--CSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEeCCCceEEEEcCEEEECCCCCCCCCCCCCC--Cccc
Confidence            11111111112233334556677799999998888888888887766644579999999999998743  3333  2336


Q ss_pred             eechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEE
Q psy14927        910 IVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVT  972 (1074)
Q Consensus       910 v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~  972 (1074)
                      ++++.+++.+..                 |..|.+.|.+||++++.++++ +.+++++.+.+.+.+++.||++++++.|.
T Consensus       164 v~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-~~~~~~~~~~l~~~l~~~gv~i~~~~~v~  242 (470)
T 1dxl_A          164 IVSSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV-PTMDAEIRKQFQRSLEKQGMKFKLKTKVV  242 (470)
T ss_dssp             EECHHHHTTCSSCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS-TTSCHHHHHHHHHHHHHSSCCEECSEEEE
T ss_pred             EEeHHHhhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccc-ccccHHHHHHHHHHHHHcCCEEEeCCEEE
Confidence            888888876543                 778888999999999999998 78999999999999999999999999999


Q ss_pred             EEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCC
Q psy14927        973 GASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHG 1052 (1074)
Q Consensus       973 ~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~ 1052 (1074)
                      ++..+++++.+++.+.. +|++.++++|.||+|+|++|+++++.++.+|++++++|+|.||++++|+.|+|||+|||+..
T Consensus       243 ~i~~~~~~~~v~~~~~~-~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~  321 (470)
T 1dxl_A          243 GVDTSGDGVKLTVEPSA-GGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPG  321 (470)
T ss_dssp             EEECSSSSEEEEEEESS-SCCCEEEEESEEECCCCEEECCTTSCCTTTTCCBCSSSCBCCCTTCBCSSTTEEECSTTSSS
T ss_pred             EEEEcCCeEEEEEEecC-CCcceEEECCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECcCCccCCCCEEEEeccCCC
Confidence            99986656667766321 24457899999999999999999876788899999899999999999999999999999998


Q ss_pred             CCcHHHHHHHHHHHHHHhhCC
Q psy14927       1053 PMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1053 ~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      |++++.|..+|+.||.||++.
T Consensus       322 ~~~~~~A~~~g~~aa~~i~g~  342 (470)
T 1dxl_A          322 PMLAHKAEEDGVACVEYLAGK  342 (470)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTS
T ss_pred             CccHHHHHHHHHHHHHHHcCC
Confidence            889999999999999999874

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=99.97  E-value=2.2e-31  Score=319.09  Aligned_cols=270  Identities=26%  Similarity=0.315  Sum_probs=228.0

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhcc--------cccc------------------------------------
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAG--------DKGV------------------------------------  826 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~--------~~g~------------------------------------  826 (1074)
                      +|+||||||+|+.||..+++     .++|+..        ..||                                    
T Consensus        44 DviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~Gi~~~~  123 (542)
T 4b1b_A           44 DYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYGWKFDN  123 (542)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGTEEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcCcccCc
Confidence            59999999999999999998     5666422        1222                                    


Q ss_pred             -ccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCC--CCeeEEEcCeEEEccCCCCCCCCCC
Q psy14927        827 -KLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSD--GSTEEVKTKNILIATGSEVTPFPGI  903 (1074)
Q Consensus       827 -~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~--G~~~~i~~d~lIIATG~~p~~ipgi  903 (1074)
                       .++|..+..+.....+.+...+...+++.||+++.|.+.+++++.+.|...+  ++.+++++|++|||||++|..+|.+
T Consensus       124 ~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G~a~f~~~~~v~V~~~~~~~~~~~i~a~~iiIATGs~P~~P~~~  203 (542)
T 4b1b_A          124 LKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGLAKLKDKNTVSYYLKGDLSKEETVTGKYILIATGCRPHIPDDV  203 (542)
T ss_dssp             EEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEEEETTEEEEEEC--CCCEEEEEEEEEEECCCEEECCCSSS
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEcCCCcceEeecccCCceEEEeeeeEEeccCCCCCCCCcc
Confidence             1244555555555666666667788889999999999999999999887653  3447899999999999999766667


Q ss_pred             CCCCcceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEE
Q psy14927        904 EVDEETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFK  966 (1074)
Q Consensus       904 ~~~~~~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~  966 (1074)
                      ++....++|+++++.+.+                 |..|+++|.+||++.+ ++++ +.+++++...+.+.|++.||.++
T Consensus       204 ~~~~~~~~ts~~~l~l~~lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~-~~~L-~~~D~ei~~~l~~~l~~~gi~~~  281 (542)
T 4b1b_A          204 EGAKELSITSDDIFSLKKDPGKTLVVGASYVALECSGFLNSLGYDVTVAVR-SIVL-RGFDQQCAVKVKLYMEEQGVMFK  281 (542)
T ss_dssp             BTHHHHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEES-SCSS-TTSCHHHHHHHHHHHHHTTCEEE
T ss_pred             cCCCccccCchhhhccccCCceEEEECCCHHHHHHHHHHHhcCCeEEEecc-cccc-cccchhHHHHHHHHHHhhcceee
Confidence            666678899999998876                 9999999999999987 4667 78999999999999999999999


Q ss_pred             eCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCe-eeCCCCCCCCCCEEE
Q psy14927        967 LGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRV-PVNSRFQTVIPNIFA 1045 (1074)
Q Consensus       967 ~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I-~Vd~~~~ts~~~IyA 1045 (1074)
                      ++..+.++...++.+.|.+.+      +.++.+|.|++|+|++||++.++++..|+.++..|.+ .||++++||+|||||
T Consensus       282 ~~~~v~~~~~~~~~~~v~~~~------~~~~~~D~vLvAvGR~Pnt~~L~le~~gv~~~~~~~~i~vd~~~~Ts~p~IyA  355 (542)
T 4b1b_A          282 NGILPKKLTKMDDKILVEFSD------KTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIADHLSCTNIPSIFA  355 (542)
T ss_dssp             ETCCEEEEEEETTEEEEEETT------SCEEEESEEEECSCEEESCGGGCGGGTTCCEETTTTEECCCTTSBCSSTTEEE
T ss_pred             cceEEEEEEecCCeEEEEEcC------CCeEEEEEEEEcccccCCccccCcccceeeecccCceEeccccccccCCCeEE
Confidence            999999999988877777654      4568899999999999999999999999999887665 788999999999999


Q ss_pred             ecccCCC-CCcHHHHHHHHHHHHHHhhCC
Q psy14927       1046 IGDCIHG-PMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1046 iGD~~~~-~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      +|||+++ |.+++.|..+|++++.||++.
T Consensus       356 iGDv~~~~p~La~~A~~eg~~aa~~i~g~  384 (542)
T 4b1b_A          356 VGDVAENVPELAPVAIKAGEILARRLFKD  384 (542)
T ss_dssp             CTTSBTTCCCCHHHHHHHHHHHHHHHHSC
T ss_pred             eccccCCchhHHHHHHHHHHHHHHHHhcC
Confidence            9999965 789999999999999999974

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=99.97  E-value=3.5e-31  Score=316.53  Aligned_cols=278  Identities=47%  Similarity=0.714  Sum_probs=224.1

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccch--------------------------------------
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNL--------------------------------------  830 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~--------------------------------------  830 (1074)
                      +.+|+||||||+|+++|..|++     +++|+.+..|+....                                      
T Consensus         5 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~   84 (478)
T 1v59_A            5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKINV   84 (478)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEECH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCccCH
Confidence            3459999999999999999998     788886666553211                                      


Q ss_pred             hhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeE------EEcCeEEEccCCCCCCCCCCC
Q psy14927        831 ETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEE------VKTKNILIATGSEVTPFPGIE  904 (1074)
Q Consensus       831 ~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~------i~~d~lIIATG~~p~~ipgi~  904 (1074)
                      ..+..+.......+...+...+.+.||+++.|++..++++.+.|.+.+|...+      +.||+||||||++|+.+|+++
T Consensus        85 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~p~~~~g~~  164 (478)
T 1v59_A           85 ANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFPGIE  164 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEESSSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEECCCTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEecCCCcccccccceEEeCEEEECcCCCCCCCCCCC
Confidence            11111111122223333456677889999999887788888888877763235      999999999999987788876


Q ss_pred             CCCcceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEe
Q psy14927        905 VDEETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKL  967 (1074)
Q Consensus       905 ~~~~~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~  967 (1074)
                      ..+..++++++++.+..                 |..|++.|.+||++++.++++ +.+++++.+.+.+.+++.||++++
T Consensus       165 ~~~~~v~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-~~~~~~~~~~l~~~l~~~gv~i~~  243 (478)
T 1v59_A          165 IDEEKIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIG-ASMDGEVAKATQKFLKKQGLDFKL  243 (478)
T ss_dssp             CCSSSEECHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-SSSCHHHHHHHHHHHHHTTCEEEC
T ss_pred             CCCceEEcHHHHHhhhccCceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccc-cccCHHHHHHHHHHHHHCCCEEEe
Confidence            44446888888887643                 888899999999999999998 689999999999999999999999


Q ss_pred             CceEEEEEe--cCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEE
Q psy14927        968 GTKVTGASK--SGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFA 1045 (1074)
Q Consensus       968 ~~~v~~i~~--~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyA 1045 (1074)
                      ++.|+++..  +++.+.+.+.+.. +|.+.++++|.||+|+|++|+++.+.++.+|++++++|+|.||++++|+.|||||
T Consensus       244 ~~~v~~i~~~~~~~~~~v~~~~~~-~g~~~~~~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyA  322 (478)
T 1v59_A          244 STKVISAKRNDDKNVVEIVVEDTK-TNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKV  322 (478)
T ss_dssp             SEEEEEEEEETTTTEEEEEEEETT-TTEEEEEEESEEEECSCEEECCTTSCTTTTTCCBCTTSCBCCCTTSBCSSTTEEE
T ss_pred             CCEEEEEEEecCCCeEEEEEEEcC-CCCceEEECCEEEECCCCCcCCCCCCchhcCceeCCCCCEeECcCCccCCCCEEE
Confidence            999999987  5556667766321 2446789999999999999999844378889999999999999999999999999


Q ss_pred             ecccCCCCCcHHHHHHHHHHHHHHhhCC
Q psy14927       1046 IGDCIHGPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1046 iGD~~~~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      +|||+..|++++.|..||+.||.||++.
T Consensus       323 ~GD~~~~~~~~~~A~~~g~~aa~~i~~~  350 (478)
T 1v59_A          323 VGDVTFGPMLAHKAEEEGIAAVEMLKTG  350 (478)
T ss_dssp             CGGGSSSCCCHHHHHHHHHHHHHHHHHS
T ss_pred             eeccCCCcccHHHHHHHHHHHHHHHcCC
Confidence            9999998889999999999999999864

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=99.97  E-value=6.2e-31  Score=314.23  Aligned_cols=275  Identities=39%  Similarity=0.612  Sum_probs=227.9

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccc------ccccc-----------------------------------
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGD------KGVKL-----------------------------------  828 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~------~g~~~-----------------------------------  828 (1074)
                      .+|+||||||+|+++|+.|++     +++|+.+.      .|+..                                   
T Consensus         4 ~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~   83 (476)
T 3lad_A            4 FDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTGEV   83 (476)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECSCC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence            459999999999999999998     78888752      23211                                   


Q ss_pred             --chhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCC
Q psy14927        829 --NLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVD  906 (1074)
Q Consensus       829 --~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~  906 (1074)
                        ++..+........+.+...+...+...||+++.++++.+++..+.|.+.+|...++.||+||||||++|..+|+.+..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~~~~~~~  163 (476)
T 3lad_A           84 AIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEIPPAPVD  163 (476)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECSTTCEEEECTTSCEEEECCSCEEECCCEEECCCTTSCCC
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEcCCCceEEEEcCEEEEcCCCCCCCCCCCCCC
Confidence              111112222222333334455667778999999999999999999988888666899999999999998666666656


Q ss_pred             CcceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCc
Q psy14927        907 EETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGT  969 (1074)
Q Consensus       907 ~~~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~  969 (1074)
                      ...++++.+++....                 |..+.+.|.+||++++.++++ +.+++++.+.+.+.|++.||++++++
T Consensus       164 ~~~v~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-~~~~~~~~~~l~~~l~~~Gv~v~~~~  242 (476)
T 3lad_A          164 QDVIVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFL-PAVDEQVAKEAQKILTKQGLKILLGA  242 (476)
T ss_dssp             SSSEEEHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS-TTSCHHHHHHHHHHHHHTTEEEEETC
T ss_pred             cccEEechhhhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC-cccCHHHHHHHHHHHHhCCCEEEECC
Confidence            677888888877543                 788889999999999999999 78999999999999999999999999


Q ss_pred             eEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEeccc
Q psy14927        970 KVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDC 1049 (1074)
Q Consensus       970 ~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~ 1049 (1074)
                      .|.+++.+++++.+.+.+.+  | ..++++|.||+|+|++|+++++.++..|++++++|+|.||++++|++|||||+|||
T Consensus       243 ~v~~i~~~~~~~~v~~~~~~--g-~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~  319 (476)
T 3lad_A          243 RVTGTEVKNKQVTVKFVDAE--G-EKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDV  319 (476)
T ss_dssp             EEEEEEECSSCEEEEEESSS--E-EEEEEESEEEECSCEEECCTTCCSSCCSCCBCTTSCBCCCTTSBCSSTTEEECGGG
T ss_pred             EEEEEEEcCCEEEEEEEeCC--C-cEEEECCEEEEeeCCcccCCCCCccccCccccCCCCEeeCCCcccCCCCEEEEEcc
Confidence            99999987777777777521  2 36899999999999999998766788999999999999999999999999999999


Q ss_pred             CCCCCcHHHHHHHHHHHHHHhhCC
Q psy14927       1050 IHGPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1050 ~~~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      ++.|.+++.|..+|+.+|.||+|.
T Consensus       320 ~~~~~~~~~A~~~g~~aa~~i~g~  343 (476)
T 3lad_A          320 VRGAMLAHKASEEGVVVAERIAGH  343 (476)
T ss_dssp             SSSCCCHHHHHHHHHHHHHHHHHC
T ss_pred             CCCcccHHHHHHHHHHHHHHhcCC
Confidence            998889999999999999999874

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=99.97  E-value=6.4e-31  Score=312.68  Aligned_cols=270  Identities=37%  Similarity=0.564  Sum_probs=217.3

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhcccccccc-----------------------------------chhhhh
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL-----------------------------------NLETMM  834 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~-----------------------------------~~~~~~  834 (1074)
                      .+|+||||||||+++|..+++     +++|+.+ .|+..                                   ++..+.
T Consensus         7 ~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   85 (464)
T 2eq6_A            7 YDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLKAKPELDLKKLG   85 (464)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEECCCEECHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCCCCCCcCHHHHH
Confidence            459999999999999999998     7888765 44321                                   111222


Q ss_pred             hhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcceechh
Q psy14927        835 GTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSST  914 (1074)
Q Consensus       835 ~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t~~  914 (1074)
                      .+.....+.+...+...+++.||+++.|+++.+++..+.+  . |  .++.||+||||||++|..+|++++. ..+++++
T Consensus        86 ~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v--~-g--~~~~~d~lViATGs~p~~p~gi~~~-~~v~~~~  159 (464)
T 2eq6_A           86 GWRDQVVKKLTGGVGTLLKGNGVELLRGFARLVGPKEVEV--G-G--ERYGAKSLILATGSEPLELKGFPFG-EDVWDST  159 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEE--T-T--EEEEEEEEEECCCEEECCBTTBCCS-SSEECHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEccCCEEEE--c-c--EEEEeCEEEEcCCCCCCCCCCCCCC-CcEEcHH
Confidence            2222222233333456677789999999888888765544  4 5  5899999999999998655566653 3578888


Q ss_pred             hHhcchH------------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEe
Q psy14927        915 GALSLKK------------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASK  976 (1074)
Q Consensus       915 ~~~~~~~------------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~  976 (1074)
                      +++.+..                  |..|+++|.+||++++.++++ +.+++++.+.+.+.+++.||++++++.|++++.
T Consensus       160 ~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~  238 (464)
T 2eq6_A          160 RALKVEEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEIL-PQGDPETAALLRRALEKEGIRVRTKTKAVGYEK  238 (464)
T ss_dssp             HHTCGGGCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-TTSCHHHHHHHHHHHHHTTCEEECSEEEEEEEE
T ss_pred             HHHhhhhhcCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccc-cccCHHHHHHHHHHHHhcCCEEEcCCEEEEEEE
Confidence            8876543                  888889999999999999998 789999999999999999999999999999998


Q ss_pred             cCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcH
Q psy14927        977 SGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLA 1056 (1074)
Q Consensus       977 ~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~ 1056 (1074)
                      +++++.+++.+.. +|+..++++|.||+|+|++|+++++.++..|++++++|+|.||++++|+.|+|||+|||+..|+++
T Consensus       239 ~~~~~~v~~~~~~-~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~~l~  317 (464)
T 2eq6_A          239 KKDGLHVRLEPAE-GGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFIRVNARMETSVPGVYAIGDAARPPLLA  317 (464)
T ss_dssp             ETTEEEEEEEETT-CCSCEEEEESEEEECSCEEESCTTSSHHHHTCCBCTTSCBCCCTTCBCSSTTEEECGGGTCSSCCH
T ss_pred             eCCEEEEEEeecC-CCceeEEEcCEEEECCCcccCCCCCChhhcCceecCCCCEEECCCcccCCCCEEEEeccCCCcccH
Confidence            7667777766310 144458999999999999999998666788999988999999999999999999999999988899


Q ss_pred             HHHHHHHHHHHHHhhCC
Q psy14927       1057 HKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1057 ~~A~~~G~~aA~~I~~~ 1073 (1074)
                      +.|..||+.+|.||++.
T Consensus       318 ~~A~~~g~~aa~~i~g~  334 (464)
T 2eq6_A          318 HKAMREGLIAAENAAGK  334 (464)
T ss_dssp             HHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhcCC
Confidence            99999999999999874

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.97  E-value=1.1e-30  Score=310.26  Aligned_cols=272  Identities=35%  Similarity=0.517  Sum_probs=219.4

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhcccccccc------------------------------------chhhh
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL------------------------------------NLETM  833 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~------------------------------------~~~~~  833 (1074)
                      .+|+||||||+|+++|..|++     +++|+. ..|+..                                    ++..+
T Consensus         4 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   82 (455)
T 1ebd_A            4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAKV   82 (455)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccCCCccCHHHH
Confidence            459999999999999999998     788876 444321                                    11112


Q ss_pred             hhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcceech
Q psy14927        834 MGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSS  913 (1074)
Q Consensus       834 ~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t~  913 (1074)
                      ........+.+...+...+.+.||+++.|+++.++++.+.|.+.+|. .++.||+||||||++|..+| +++....++++
T Consensus        83 ~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~-~~i~~d~lViATGs~p~~~~-~~g~~~~v~~~  160 (455)
T 1ebd_A           83 QEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSA-QTYTFKNAIIATGSRPIELP-NFKFSNRILDS  160 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEETTEEEEEETTEE-EEEECSEEEECCCEEECCBT-TBCCCSSEECH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCc-EEEEeCEEEEecCCCCCCCC-CCCccceEecH
Confidence            22222222334444566777889999999888899888888877652 57999999999999874332 22222237888


Q ss_pred             hhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEe
Q psy14927        914 TGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASK  976 (1074)
Q Consensus       914 ~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~  976 (1074)
                      .+++.+..                 |..|.+.|.+||++++.++++ +.+++++.+.+.+.+++.||++++++.|.++.+
T Consensus       161 ~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~  239 (455)
T 1ebd_A          161 TGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEIL-SGFEKQMAAIIKKRLKKKGVEVVTNALAKGAEE  239 (455)
T ss_dssp             HHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS-TTSCHHHHHHHHHHHHHTTCEEEESEEEEEEEE
T ss_pred             HHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccc-cccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEE
Confidence            88776543                 888889999999999999998 789999999999999999999999999999998


Q ss_pred             cCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcH
Q psy14927        977 SGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLA 1056 (1074)
Q Consensus       977 ~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~ 1056 (1074)
                      +++++.+++.+   +|.+.++++|.||+|+|++|++++++++.+|++++++|+|.||++++|+.|+|||+|||+..|+++
T Consensus       240 ~~~~~~v~~~~---~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~~~~  316 (455)
T 1ebd_A          240 REDGVTVTYEA---NGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVPGPALA  316 (455)
T ss_dssp             ETTEEEEEEEE---TTEEEEEEESEEEECSCEEESCSSSSTTTTTCCBCTTSCBCCCTTCBCSSTTEEECGGGSSSCCCH
T ss_pred             eCCeEEEEEEe---CCceeEEEcCEEEECcCCCcccCcCChhhcCCccCCCCCEeeCCCcccCCCCEEEEeccCCCcccH
Confidence            76666676653   244678999999999999999998766888999999999999999999999999999999988899


Q ss_pred             HHHHHHHHHHHHHhhCC
Q psy14927       1057 HKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1057 ~~A~~~G~~aA~~I~~~ 1073 (1074)
                      +.|..+|+.||.||++.
T Consensus       317 ~~A~~~g~~aa~~i~~~  333 (455)
T 1ebd_A          317 HKASYEGKVAAEAIAGH  333 (455)
T ss_dssp             HHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHcCC
Confidence            99999999999999874

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=99.97  E-value=1.1e-30  Score=311.00  Aligned_cols=272  Identities=27%  Similarity=0.373  Sum_probs=218.0

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhcccccccc------------------------------------chhhh
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL------------------------------------NLETM  833 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~------------------------------------~~~~~  833 (1074)
                      .+|+||||||+|+++|..|++     +++|+. ..|+..                                    ++..+
T Consensus         4 ~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~-~~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   82 (464)
T 2a8x_A            4 YDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-YWGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTFDYGIA   82 (464)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEECCEECHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCccCHHHH
Confidence            359999999999999999998     788876 343321                                    11111


Q ss_pred             hhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcceech
Q psy14927        834 MGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSS  913 (1074)
Q Consensus       834 ~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t~  913 (1074)
                      ..+.......+...+.+.+.+.||+++.|+++.++++.+.|.+.+|...++.||+||+|||++|..+| +++....++++
T Consensus        83 ~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~~~~~d~lViAtG~~~~~~~-~~g~~~~~~~~  161 (464)
T 2a8x_A           83 YDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGSSTRLVP-GTSLSANVVTY  161 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEESSSSEEEEEETTSCCEEEEEEEEEECCCEEECCCT-TCCCBTTEECH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEEeCCCceEEEEcCEEEECCCCCCCCCC-CCCCCceEEec
Confidence            11111122223334556777789999999877788888888887774457999999999999874332 22222237888


Q ss_pred             hhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEe
Q psy14927        914 TGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASK  976 (1074)
Q Consensus       914 ~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~  976 (1074)
                      ++++.+..                 |..+.++|.+||++++.++++ +.+++++.+.+.+.|++.||++++++.|.++.+
T Consensus       162 ~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~  240 (464)
T 2a8x_A          162 EEQILSRELPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRAL-PNEDADVSKEIEKQFKKLGVTILTATKVESIAD  240 (464)
T ss_dssp             HHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-TTSCHHHHHHHHHHHHHHTCEEECSCEEEEEEE
T ss_pred             HHHhhccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccc-cccCHHHHHHHHHHHHHcCCEEEeCcEEEEEEE
Confidence            88776543                 888889999999999999998 789999999999999999999999999999998


Q ss_pred             cCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcH
Q psy14927        977 SGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLA 1056 (1074)
Q Consensus       977 ~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~ 1056 (1074)
                      +++++.+.+.+   +|++.++++|.||+|+|++||+++++++.+|++++++|+|.||+++||+.|||||+|||++.++++
T Consensus       241 ~~~~~~v~~~~---~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~~~  317 (464)
T 2a8x_A          241 GGSQVTVTVTK---DGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRTNVGHIYAIGDVNGLLQLA  317 (464)
T ss_dssp             CSSCEEEEEES---SSCEEEEEESEEEECSCEEECCSSSCHHHHTCCBCTTSSBCCCTTSBCSSTTEEECGGGGCSSCSH
T ss_pred             cCCeEEEEEEc---CCceEEEEcCEEEECCCCCccCCCCCchhcCCccCCCCCEeECcCCccCCCCEEEeECcCCCccCH
Confidence            66666676652   244578999999999999999998766788999998999999999999999999999999988899


Q ss_pred             HHHHHHHHHHHHHhhC
Q psy14927       1057 HKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus      1057 ~~A~~~G~~aA~~I~~ 1072 (1074)
                      +.|..||+.+|.||++
T Consensus       318 ~~A~~~g~~aa~~i~g  333 (464)
T 2a8x_A          318 HVAEAQGVVAAETIAG  333 (464)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcC
Confidence            9999999999999997

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=99.97  E-value=1.2e-30  Score=312.55  Aligned_cols=277  Identities=23%  Similarity=0.272  Sum_probs=222.7

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhh--------ccccccc---------------------------------
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQ--------AGDKGVK---------------------------------  827 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~--------~~~~g~~---------------------------------  827 (1074)
                      +.+|+||||||||+.||..+++     +++|+        ....||.                                 
T Consensus         6 ~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g~~~~   85 (488)
T 3dgz_A            6 SFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGWEVA   85 (488)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcCcccC
Confidence            4469999999999999999998     78885        2233431                                 


Q ss_pred             ----cchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCC
Q psy14927        828 ----LNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGI  903 (1074)
Q Consensus       828 ----~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi  903 (1074)
                          ++|..+..+.......+...+...+...+|+++.++++++++..+.|.+.+|+..++.||+||||||++|..+|.+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~~i  165 (488)
T 3dgz_A           86 QPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQV  165 (488)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCEEEESSSSEEEEECTTSCEEEEEEEEEEECCCEEECCCSSC
T ss_pred             CcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCceEEEECCEEEEcCCCCCCCCCCC
Confidence                2233333333334444444566677788999999999999999999988888667899999999999988432225


Q ss_pred             CCCCcceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEE
Q psy14927        904 EVDEETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFK  966 (1074)
Q Consensus       904 ~~~~~~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~  966 (1074)
                      ++....++++++++.+..                 |..|.++|.+||++++.. ++ +.+++++.+.+.+.|++.||+++
T Consensus       166 ~G~~~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~l-~~~d~~~~~~l~~~l~~~gv~~~  243 (488)
T 3dgz_A          166 KGALEYGITSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTVMMRSI-PL-RGFDQQMSSLVTEHMESHGTQFL  243 (488)
T ss_dssp             BTHHHHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-SS-TTSCHHHHHHHHHHHHHTTCEEE
T ss_pred             CCcccccCcHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCc-cc-ccCCHHHHHHHHHHHHHCCCEEE
Confidence            544456678888877554                 888899999999999864 55 78999999999999999999999


Q ss_pred             eCceEEEEEecC-CeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccC-CCCCeeeCCCCCCCCCCEE
Q psy14927        967 LGTKVTGASKSG-DNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKD-EKGRVPVNSRFQTVIPNIF 1044 (1074)
Q Consensus       967 ~~~~v~~i~~~~-~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld-~~G~I~Vd~~~~ts~~~Iy 1044 (1074)
                      +++.+.++...+ +.+.+++.+.. +|+..++++|.||+|+|++|+++++++...|++++ ++|+|.||++++|++||||
T Consensus       244 ~~~~v~~i~~~~~~~~~v~~~~~~-~g~~~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~~G~i~vd~~~~t~~~~Iy  322 (488)
T 3dgz_A          244 KGCVPSHIKKLPTNQLQVTWEDHA-SGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEATSVPHIY  322 (488)
T ss_dssp             ETEEEEEEEECTTSCEEEEEEETT-TTEEEEEEESEEEECSCEEESCGGGTGGGGTCCBCSSSCCBCCCTTSBCSSTTEE
T ss_pred             eCCEEEEEEEcCCCcEEEEEEeCC-CCeeEEEECCEEEEcccCCcccCcCCccccCcEecCCCCeEeECCCCccCCCCEE
Confidence            999999998743 44667776622 23334689999999999999999877788999999 8999999999999999999


Q ss_pred             EecccC-CCCCcHHHHHHHHHHHHHHhhCC
Q psy14927       1045 AIGDCI-HGPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1045 AiGD~~-~~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      |+|||+ ..|.+++.|..+|+++|.||++.
T Consensus       323 A~GD~~~~~~~~~~~A~~~g~~aa~~i~g~  352 (488)
T 3dgz_A          323 AIGDVAEGRPELTPTAIKAGKLLAQRLFGK  352 (488)
T ss_dssp             ECGGGBTTCCCCHHHHHHHHHHHHHHHHSC
T ss_pred             EeEEecCCCCcchhHHHHHHHHHHHHHcCC
Confidence            999997 56788999999999999999974

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=99.97  E-value=1.1e-30  Score=312.43  Aligned_cols=276  Identities=32%  Similarity=0.487  Sum_probs=220.8

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhcccccccc------------------------------------chhh
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL------------------------------------NLET  832 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~------------------------------------~~~~  832 (1074)
                      +.+|+||||||+|+++|+.|++     +++|+.+..|+..                                    ++..
T Consensus         6 ~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~~~~~~~~~   85 (482)
T 1ojt_A            6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDIDM   85 (482)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCCHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccCCCccCHHH
Confidence            3459999999999999999998     7888866655431                                    1111


Q ss_pred             hhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCC----------CeeEEEcCeEEEccCCCCCCCCC
Q psy14927        833 MMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDG----------STEEVKTKNILIATGSEVTPFPG  902 (1074)
Q Consensus       833 ~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G----------~~~~i~~d~lIIATG~~p~~ipg  902 (1074)
                      +..........+...+...+...||+++.|+++.++++.+.+.+.+|          +..+++||+||||||++|..+|+
T Consensus        86 ~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs~p~~~~~  165 (482)
T 1ojt_A           86 LRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTKLPF  165 (482)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEEECCCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEEccCCEEEEEecCCcccccccccCcceEEEcCEEEECCCCCCCCCCC
Confidence            11112222223333345667788999999988778888777765443          12579999999999999865554


Q ss_pred             CCCCCcceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEE
Q psy14927        903 IEVDEETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQF  965 (1074)
Q Consensus       903 i~~~~~~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i  965 (1074)
                      ++.+ ..++++++++.+..                 |..|.++|.+||++++.++++ +.+++++.+.+.+.|++.||++
T Consensus       166 i~~~-~~v~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l-~~~~~~~~~~l~~~l~~~gV~i  243 (482)
T 1ojt_A          166 IPED-PRIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLM-QGADRDLVKVWQKQNEYRFDNI  243 (482)
T ss_dssp             CCCC-TTEECHHHHTTCCCCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSS-TTSCHHHHHHHHHHHGGGEEEE
T ss_pred             CCcc-CcEEcHHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccc-cccCHHHHHHHHHHHHhcCCEE
Confidence            5533 36888888887653                 888889999999999999999 7899999999999999999999


Q ss_pred             EeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEE
Q psy14927        966 KLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFA 1045 (1074)
Q Consensus       966 ~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyA 1045 (1074)
                      ++++.|.+++.+++++.+++.+..  +.++++++|.||+|+|++||+++++++.+|++++++|+|.||++++|+.|+|||
T Consensus       244 ~~~~~v~~i~~~~~~~~v~~~~~~--~~g~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~~~~IyA  321 (482)
T 1ojt_A          244 MVNTKTVAVEPKEDGVYVTFEGAN--APKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYA  321 (482)
T ss_dssp             ECSCEEEEEEEETTEEEEEEESSS--CCSSCEEESCEEECCCEEECGGGTTGGGTTCCCCTTSCCCCCTTSBCSSTTEEE
T ss_pred             EECCEEEEEEEcCCeEEEEEeccC--CCceEEEcCEEEECcCCCcCCCCCChhhcCceeCCCCCEeeCCCcccCCCCEEE
Confidence            999999999987666677765411  224568999999999999999987678899999999999999999999999999


Q ss_pred             ecccCCCCCcHHHHHHHHHHHHHHhhCC
Q psy14927       1046 IGDCIHGPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1046 iGD~~~~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      +|||+..|++++.|..||+.+|.||++.
T Consensus       322 ~GD~~~~~~l~~~A~~~g~~aa~~i~g~  349 (482)
T 1ojt_A          322 IGDIVGQPMLAHKAVHEGHVAAENCAGH  349 (482)
T ss_dssp             CGGGTCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred             EEcccCCCccHHHHHHHHHHHHHHHcCC
Confidence            9999998889999999999999999974

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=99.97  E-value=2e-30  Score=312.35  Aligned_cols=276  Identities=21%  Similarity=0.331  Sum_probs=220.5

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhcc--------ccccc---------------------------------
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAG--------DKGVK---------------------------------  827 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~--------~~g~~---------------------------------  827 (1074)
                      +.+|+||||||+|+.||+.+++     +++|+.+        ..||.                                 
T Consensus        32 ~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~g~~~~  111 (519)
T 3qfa_A           32 DYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVE  111 (519)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBCCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhcCcccC
Confidence            4569999999999999999998     7888743        33432                                 


Q ss_pred             ----cchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCC
Q psy14927        828 ----LNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGI  903 (1074)
Q Consensus       828 ----~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi  903 (1074)
                          ++|..+..+.....+.+...+...++..+|+++.|+++++++..+.|.+.+|+..++.||+||||||++|. +|.+
T Consensus       112 ~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~a~~~d~~~v~v~~~~g~~~~i~~d~lViATGs~p~-~p~i  190 (519)
T 3qfa_A          112 ETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPR-YLGI  190 (519)
T ss_dssp             SSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCCCEEEEEEEEECCCEEEC-CCCC
T ss_pred             CcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEcCCCCEEEEECCEEEEECCCCcC-CCCC
Confidence                22233333333334444445556777889999999999999999999888885568999999999999884 3345


Q ss_pred             CCCCcceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEE
Q psy14927        904 EVDEETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFK  966 (1074)
Q Consensus       904 ~~~~~~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~  966 (1074)
                      ++....++++++++.+..                 |..|.++|.+||++++. .++ +.+++++.+.+.+.|++.||+++
T Consensus       191 ~G~~~~~~t~~~~~~l~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~-~~l-~~~d~~~~~~~~~~l~~~GV~v~  268 (519)
T 3qfa_A          191 PGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILL-RGFDQDMANKIGEHMEEHGIKFI  268 (519)
T ss_dssp             TTHHHHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSS-TTSCHHHHHHHHHHHHHTTCEEE
T ss_pred             CCccCceEcHHHHhhhhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecc-ccc-ccCCHHHHHHHHHHHHHCCCEEE
Confidence            554556778888876554                 88889999999999985 666 78999999999999999999999


Q ss_pred             eCceEEEEEecC----CeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccC-CCCCeeeCCCCCCCCC
Q psy14927        967 LGTKVTGASKSG----DNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKD-EKGRVPVNSRFQTVIP 1041 (1074)
Q Consensus       967 ~~~~v~~i~~~~----~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld-~~G~I~Vd~~~~ts~~ 1041 (1074)
                      +++.+.++...+    +.+.+++...+ .++..++++|.||+++|++|++++++++..|++++ ++|+|.||++++|++|
T Consensus       269 ~~~~v~~v~~~~~~~~~~~~v~~~~~~-g~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~~G~I~Vd~~~~Ts~~  347 (519)
T 3qfa_A          269 RQFVPIKVEQIEAGTPGRLRVVAQSTN-SEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVP  347 (519)
T ss_dssp             ESEEEEEEEEEECCTTCEEEEEEEESS-SSCEEEEEESEEEECSCEEESCSSSCSTTTTCCCCTTTCCBCCCTTSBCSST
T ss_pred             eCCeEEEEEEccCCCCceEEEEEEECC-CcEEEEEECCEEEEecCCcccCCCCChhhcCcEEcCCCCeEeeCCCCccCCC
Confidence            998888877532    34556655422 12225789999999999999999877888999998 6899999999999999


Q ss_pred             CEEEecccC-CCCCcHHHHHHHHHHHHHHhhCC
Q psy14927       1042 NIFAIGDCI-HGPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1042 ~IyAiGD~~-~~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      ||||+|||+ +.|.+++.|..+|+++|.||++.
T Consensus       348 ~IyA~GD~~~g~~~~~~~A~~~g~~aa~~i~g~  380 (519)
T 3qfa_A          348 YIYAIGDILEDKVELTPVAIQAGRLLAQRLYAG  380 (519)
T ss_dssp             TEEECGGGBSSSCCCHHHHHHHHHHHHHHHHSC
T ss_pred             CEEEEEeccCCCCccHHHHHHHHHHHHHHHcCC
Confidence            999999998 56889999999999999999974

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.4e-30  Score=308.93  Aligned_cols=271  Identities=21%  Similarity=0.266  Sum_probs=215.6

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhcccccccc----------------------------------------
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL----------------------------------------  828 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~----------------------------------------  828 (1074)
                      +.+|+||||||+|+++|+.|++     +++|+. ..|+..                                        
T Consensus        11 ~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   89 (479)
T 2hqm_A           11 HYDYLVIGGGSGGVASARRAASYGAKTLLVEAK-ALGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLDKEHL   89 (479)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTSCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCCSGGGC
T ss_pred             cCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCC-CcCCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCcccccccccccC
Confidence            3459999999999999999998     788876 334321                                        


Q ss_pred             --chhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCC
Q psy14927        829 --NLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVD  906 (1074)
Q Consensus       829 --~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~  906 (1074)
                        ++..+..........+...+...+...||+++.++++.+++..+.|.+.+|...++.||+||||||++|..++.+++.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~~i~g~  169 (479)
T 2hqm_A           90 TFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGWARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIFPENIPGF  169 (479)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECTTSCEEEEESSSCCEEEEEEEEEECCCEEECCCTTSTTG
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCCCCCCCc
Confidence              111111122222233334455667788999999999999988888888777434799999999999987422134433


Q ss_pred             CcceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCc
Q psy14927        907 EETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGT  969 (1074)
Q Consensus       907 ~~~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~  969 (1074)
                       ..++++++++.+..                 |..|.++|.+||++++.++++ +.+++++.+.+.+.|++.||++++++
T Consensus       170 -~~~~~~~~~~~l~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l-~~~d~~~~~~l~~~l~~~Gv~i~~~~  247 (479)
T 2hqm_A          170 -ELGTDSDGFFRLEEQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVL-RKFDECIQNTITDHYVKEGINVHKLS  247 (479)
T ss_dssp             -GGSBCHHHHHHCSSCCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSC-TTSCHHHHHHHHHHHHHHTCEEECSC
T ss_pred             -ccccchHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccc-cccCHHHHHHHHHHHHhCCeEEEeCC
Confidence             34677777766542                 888889999999999999998 78999999999999999999999999


Q ss_pred             eEEEEEecCCe--EEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEec
Q psy14927        970 KVTGASKSGDN--ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIG 1047 (1074)
Q Consensus       970 ~v~~i~~~~~~--~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiG 1047 (1074)
                      .|+++..++++  +.|++.+    |+ .++++|.||+|+|++|++. +.++..|++++++|+|.||++++|+.|+|||+|
T Consensus       248 ~v~~i~~~~~~~~~~v~~~~----G~-~~i~~D~vv~a~G~~p~~~-l~l~~~gl~~~~~G~i~vd~~~~t~~~~IyA~G  321 (479)
T 2hqm_A          248 KIVKVEKNVETDKLKIHMND----SK-SIDDVDELIWTIGRKSHLG-MGSENVGIKLNSHDQIIADEYQNTNVPNIYSLG  321 (479)
T ss_dssp             CEEEEEECC-CCCEEEEETT----SC-EEEEESEEEECSCEEECCC-SSGGGGTCCBCTTSCBCCCTTCBCSSTTEEECG
T ss_pred             EEEEEEEcCCCcEEEEEECC----Cc-EEEEcCEEEECCCCCCccc-cChhhcCceECCCCCEeECCCCccCCCCEEEEE
Confidence            99999875444  5666543    32 6899999999999999994 446788999999999999999999999999999


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHHhhCC
Q psy14927       1048 DCIHGPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1048 D~~~~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      ||++.|.++..|..+|+.+|.||++.
T Consensus       322 D~~~~~~~~~~A~~~g~~aa~~i~~~  347 (479)
T 2hqm_A          322 DVVGKVELTPVAIAAGRKLSNRLFGP  347 (479)
T ss_dssp             GGTTSSCCHHHHHHHHHHHHHHHHSC
T ss_pred             ecCCCcccHHHHHHHHHHHHHHhcCC
Confidence            99988889999999999999999874

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=99.97  E-value=3.5e-30  Score=309.31  Aligned_cols=268  Identities=22%  Similarity=0.306  Sum_probs=215.6

Q ss_pred             hhhhhccccchHHHHHHHhh--------hhhhhcccccccc--------------------------------------c
Q psy14927        796 VVLNTLGNCAAVQANYHLAT--------KLFTQAGDKGVKL--------------------------------------N  829 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~--------~l~e~~~~~g~~~--------------------------------------~  829 (1074)
                      +||||||||+|+++|+.|++        +++|+.+ .|+..                                      +
T Consensus         4 dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   82 (499)
T 1xdi_A            4 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKIS   82 (499)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------CBC
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccCCCccC
Confidence            49999999999999999987        4677665 44321                                      1


Q ss_pred             hhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecC------CeEEEEeCCCCeeEEEcCeEEEccCCCCCC--CC
Q psy14927        830 LETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGP------NTVTVIKSDGSTEEVKTKNILIATGSEVTP--FP  901 (1074)
Q Consensus       830 ~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~------~~~~v~~~~G~~~~i~~d~lIIATG~~p~~--ip  901 (1074)
                      +..+..+.......+...+.+.+.+.||+++.++++.+++      +.+.|.+.+|+..++.||+||||||++|..  +|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs~p~~p~i~  162 (499)
T 1xdi_A           83 LPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSA  162 (499)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCCGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCCCCC
Confidence            2222222222223344445677788899999999999988      667777777732379999999999998743  34


Q ss_pred             CCCCCCcceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCE
Q psy14927        902 GIEVDEETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQ  964 (1074)
Q Consensus       902 gi~~~~~~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~  964 (1074)
                      ++  +...++++.+++.+..                 |..+.++|.+||++++.++++ +.+++++...+.+.+++.||+
T Consensus       163 g~--~~~~v~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l-~~~d~~~~~~l~~~l~~~GV~  239 (499)
T 1xdi_A          163 QP--DGERILTWRQLYDLDALPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVL-PYEDADAALVLEESFAERGVR  239 (499)
T ss_dssp             CC--CSSSEEEGGGGGGCSSCCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSS-CCSSHHHHHHHHHHHHHTTCE
T ss_pred             CC--CcCcEEehhHhhhhhccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc-cccCHHHHHHHHHHHHHCCCE
Confidence            43  2335778877776533                 778889999999999999999 679999999999999999999


Q ss_pred             EEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEE
Q psy14927        965 FKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIF 1044 (1074)
Q Consensus       965 i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~Iy 1044 (1074)
                      +++++.|+++..+++++.+++.+      +.++++|.||+|+|++|++++++++.+|++++++|+|.||++++|+.|+||
T Consensus       240 i~~~~~V~~i~~~~~~v~v~~~~------g~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~~~t~~~~Iy  313 (499)
T 1xdi_A          240 LFKNARAASVTRTGAGVLVTMTD------GRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDRVSRTLATGIY  313 (499)
T ss_dssp             EETTCCEEEEEECSSSEEEEETT------SCEEEESEEEECCCEEECCSSSCTTTTTCCCBTTTBCCCCSSSBCSSTTEE
T ss_pred             EEeCCEEEEEEEeCCEEEEEECC------CcEEEcCEEEECCCCCcCCCcCCchhcCceECCCCCEEECCCcccCCCCEE
Confidence            99999999999866555555322      468999999999999999998767888999999999999999999999999


Q ss_pred             EecccCCCCCcHHHHHHHHHHHHHHhhCC
Q psy14927       1045 AIGDCIHGPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1045 AiGD~~~~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      |+|||++.+++++.|..+|+.+|.||+|.
T Consensus       314 A~GD~~~~~~l~~~A~~~g~~aa~~i~g~  342 (499)
T 1xdi_A          314 AAGDCTGLLPLASVAAMQGRIAMYHALGE  342 (499)
T ss_dssp             ECSGGGTSCSCHHHHHHHHHHHHHHHTTC
T ss_pred             EEeccCCCcccHHHHHHHHHHHHHHhcCC
Confidence            99999998889999999999999999975

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=99.97  E-value=4e-30  Score=307.92  Aligned_cols=269  Identities=26%  Similarity=0.375  Sum_probs=214.2

Q ss_pred             chhhhhhccccchHHHHHHHhh------hhhh--------hcccccccc-------------------------------
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT------KLFT--------QAGDKGVKL-------------------------------  828 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~------~l~e--------~~~~~g~~~-------------------------------  828 (1074)
                      +.+|+||||||+|+++|+.+++      +++|        +....|+..                               
T Consensus         7 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~   86 (495)
T 2wpf_A            7 AFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESAGFGWEF   86 (495)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTTEEC
T ss_pred             ccCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeeecCCcchHHHHHHHHHHHHHHhHHHhcCccc
Confidence            3459999999999999999976      5888        244455432                               


Q ss_pred             -------chhhhhhhhhHHHhhhhhhHHHHhhhC-CeEEEeeeEEEecCCeEEEEeC-C-----CCeeEEEcCeEEEccC
Q psy14927        829 -------NLETMMGTKSAAVKALTGGIAHLFKSN-KVTQLNGHGKITGPNTVTVIKS-D-----GSTEEVKTKNILIATG  894 (1074)
Q Consensus       829 -------~~~~~~~~~~~~~~~l~~~~~~~l~~~-gV~~~~g~v~~id~~~~~v~~~-~-----G~~~~i~~d~lIIATG  894 (1074)
                             +|..+..+.......+...+...+.+. ||+++.|+++++++..+.+... +     |  .++.||+||||||
T Consensus        87 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~~~v~v~~~~~~~~~~~--~~~~~d~lViATG  164 (495)
T 2wpf_A           87 DGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLESKNVVVVRETADPKSAVK--ERLQADHILLATG  164 (495)
T ss_dssp             CGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEESEEEEEETTEEEEESSSSTTSCEE--EEEEEEEEEECCC
T ss_pred             CCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeEEEEeeCCEEEEeecCCccCCCC--eEEEcCEEEEeCC
Confidence                   122222222223333444455667788 9999999999998876665421 2     3  6799999999999


Q ss_pred             CCCCCCCCCCCCCcceechhhHhcchH-----------------hhHHhhc---CCcEEEEecCCccCCCCCCHHHHHHH
Q psy14927        895 SEVTPFPGIEVDEETIVSSTGALSLKK-----------------GSVWGRL---GAEVTAIEFMNAIGGMGIDGEVAKQF  954 (1074)
Q Consensus       895 ~~p~~ipgi~~~~~~v~t~~~~~~~~~-----------------A~~l~~~---G~~Vtlv~~~~~~~~~~~~~~~~~~~  954 (1074)
                      ++|.. |.+++. ..++++++++.+..                 |..|.++   |.+||++++.++++ +.+++++...+
T Consensus       165 s~p~~-p~i~G~-~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l-~~~d~~~~~~l  241 (495)
T 2wpf_A          165 SWPQM-PAIPGI-EHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLIL-RGFDETIREEV  241 (495)
T ss_dssp             EEECC-CCCTTG-GGCEEHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSC-TTSCHHHHHHH
T ss_pred             CCcCC-CCCCCc-cccccHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccc-cccCHHHHHHH
Confidence            98742 334433 35778888877653                 7888888   99999999999998 78999999999


Q ss_pred             HHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeC
Q psy14927        955 QRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVN 1033 (1074)
Q Consensus       955 ~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd 1033 (1074)
                      .+.|++.||++++++.|.++..++++ +.|++.+      ++++++|.||+|+|++|+++++.++.+|++++++|+|.||
T Consensus       242 ~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~------G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~i~Vd  315 (495)
T 2wpf_A          242 TKQLTANGIEIMTNENPAKVSLNTDGSKHVTFES------GKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVD  315 (495)
T ss_dssp             HHHHHHTTCEEEESCCEEEEEECTTSCEEEEETT------SCEEEESEEEECSCEEECCGGGTGGGTTCCBCTTSSBCCC
T ss_pred             HHHHHhCCCEEEeCCEEEEEEEcCCceEEEEECC------CcEEEcCEEEECCCCcccccccchhhcCccCCCCCCEEEC
Confidence            99999999999999999999876543 5666543      3489999999999999999866578889999999999999


Q ss_pred             CCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHhhCC
Q psy14927       1034 SRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1034 ~~~~ts~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      ++++|+.|||||+|||++.+++++.|..+|+.+|.||++.
T Consensus       316 ~~~~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~  355 (495)
T 2wpf_A          316 EFSRTNVPNIYAIGDITDRLMLTPVAINEGAALVDTVFGN  355 (495)
T ss_dssp             TTCBCSSTTEEECGGGGCSCCCHHHHHHHHHHHHHHHHSS
T ss_pred             CCCccCCCCEEEEeccCCCccCHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999998889999999999999999974

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=99.97  E-value=5.6e-30  Score=306.42  Aligned_cols=270  Identities=25%  Similarity=0.383  Sum_probs=215.7

Q ss_pred             hhhhhhccccchHHHHHHHhh------hhhh--------hcccccccc--------------------------------
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT------KLFT--------QAGDKGVKL--------------------------------  828 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~------~l~e--------~~~~~g~~~--------------------------------  828 (1074)
                      .+|+||||||+|+++|+.+++      +++|        +....|+..                                
T Consensus         4 ~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~   83 (490)
T 1fec_A            4 YDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGWELD   83 (490)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEECC
T ss_pred             ccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHHHHHHHHHhcCcccC
Confidence            359999999999999999976      6888        244455432                                


Q ss_pred             ------chhhhhhhhhHHHhhhhhhHHHHhhhC-CeEEEeeeEEEecCCeEEEEe---CCCC-eeEEEcCeEEEccCCCC
Q psy14927        829 ------NLETMMGTKSAAVKALTGGIAHLFKSN-KVTQLNGHGKITGPNTVTVIK---SDGS-TEEVKTKNILIATGSEV  897 (1074)
Q Consensus       829 ------~~~~~~~~~~~~~~~l~~~~~~~l~~~-gV~~~~g~v~~id~~~~~v~~---~~G~-~~~i~~d~lIIATG~~p  897 (1074)
                            ++..+..+.......+...+...+.+. ||+++.|+++.+++..+.+..   .+|. ..++.||+||||||++|
T Consensus        84 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~~~v~v~~~~~~~g~~~~~~~~d~lviAtGs~p  163 (490)
T 1fec_A           84 RESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWP  163 (490)
T ss_dssp             GGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEEECCCEEE
T ss_pred             CcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeEEEEeeCCEEEEEeeccCCCCceEEEEcCEEEEeCCCCC
Confidence                  222222222333334444566667788 999999999999988776654   2442 25799999999999987


Q ss_pred             CCCCCCCCCCcceechhhHhcchH-----------------hhHHhhc---CCcEEEEecCCccCCCCCCHHHHHHHHHH
Q psy14927        898 TPFPGIEVDEETIVSSTGALSLKK-----------------GSVWGRL---GAEVTAIEFMNAIGGMGIDGEVAKQFQRI  957 (1074)
Q Consensus       898 ~~ipgi~~~~~~v~t~~~~~~~~~-----------------A~~l~~~---G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~  957 (1074)
                      . +|.+++. ..++++++++.+..                 |..|.++   |.+||++++.++++ +.+++++...+.+.
T Consensus       164 ~-~p~i~g~-~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l-~~~d~~~~~~l~~~  240 (490)
T 1fec_A          164 Q-HLGIEGD-DLCITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL-RGFDSELRKQLTEQ  240 (490)
T ss_dssp             C-CCCSBTG-GGCBCHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS-TTSCHHHHHHHHHH
T ss_pred             C-CCCCCCc-cceecHHHHhhhhhcCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcc-cccCHHHHHHHHHH
Confidence            4 3334433 35778888876653                 7888888   99999999999998 78999999999999


Q ss_pred             HHhCCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCC
Q psy14927        958 LGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRF 1036 (1074)
Q Consensus       958 l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~ 1036 (1074)
                      +++.||++++++.|+++..++++ +.|++.+    |  +++++|.||+|+|++|+++++.++.+|++++++|+|.||+++
T Consensus       241 l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~----G--~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~I~Vd~~~  314 (490)
T 1fec_A          241 LRANGINVRTHENPAKVTKNADGTRHVVFES----G--AEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVDAYS  314 (490)
T ss_dssp             HHHTTEEEEETCCEEEEEECTTSCEEEEETT----S--CEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTC
T ss_pred             HHhCCCEEEeCCEEEEEEEcCCCEEEEEECC----C--cEEEcCEEEEccCCCcCccccCchhcCccCCCCCCEEECCCC
Confidence            99999999999999999876543 5666543    3  479999999999999999865568889999999999999999


Q ss_pred             CCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHhhCC
Q psy14927       1037 QTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1037 ~ts~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      +|+.|+|||+|||++.+++++.|..+|+.+|.||++.
T Consensus       315 ~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~  351 (490)
T 1fec_A          315 KTNVDNIYAIGDVTDRVMLTPVAINEGAAFVDTVFAN  351 (490)
T ss_dssp             BCSSTTEEECGGGGCSCCCHHHHHHHHHHHHHHHHSS
T ss_pred             ccCCCCEEEEeccCCCccCHHHHHHHHHHHHHHhcCC
Confidence            9999999999999988889999999999999999973

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=99.97  E-value=2.7e-30  Score=306.04  Aligned_cols=264  Identities=24%  Similarity=0.375  Sum_probs=211.9

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhcccccccc-------------------------------------chhh
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL-------------------------------------NLET  832 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~-------------------------------------~~~~  832 (1074)
                      .+|+||||||+|+++|..+++     +++|+. ..|+..                                     ++..
T Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~   83 (450)
T 1ges_A            5 YDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWET   83 (450)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEcCC-CCCCcccccCccChHHHHHHHHHHHHHHHHHHhcCccCCCCccCHHH
Confidence            459999999999999999998     788876 444432                                     1111


Q ss_pred             hhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcceec
Q psy14927        833 MMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVS  912 (1074)
Q Consensus       833 ~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t  912 (1074)
                      +..........+...+...+.+.||+++.|+++.+++..+.+   +|  .++.||+||||||++|. +|.+++. ..+++
T Consensus        84 l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~~---~g--~~~~~d~lviAtGs~p~-~p~i~g~-~~~~~  156 (450)
T 1ges_A           84 LIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEV---NG--ETITADHILIATGGRPS-HPDIPGV-EYGID  156 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETTEEEE---TT--EEEEEEEEEECCCEEEC-CCCSTTG-GGSBC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEE---CC--EEEEeCEEEECCCCCCC-CCCCCCc-cceec
Confidence            222222223334444556677889999999988888875544   56  57999999999999874 3334433 35677


Q ss_pred             hhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEE
Q psy14927        913 STGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGAS  975 (1074)
Q Consensus       913 ~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~  975 (1074)
                      +++++.+..                 |..|.++|.+||++++.+.++ +.+++++.+.+.+.+++.||++++++.|.+++
T Consensus       157 ~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~  235 (450)
T 1ges_A          157 SDGFFALPALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPL-PSFDPMISETLVEVMNAEGPQLHTNAIPKAVV  235 (450)
T ss_dssp             HHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-TTSCHHHHHHHHHHHHHHSCEEECSCCEEEEE
T ss_pred             HHHhhhhhhcCCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchh-hhhhHHHHHHHHHHHHHCCCEEEeCCEEEEEE
Confidence            888776543                 888889999999999999988 78999999999999999999999999999998


Q ss_pred             ecCCe-EEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCC
Q psy14927        976 KSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPM 1054 (1074)
Q Consensus       976 ~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~ 1054 (1074)
                      .++++ +.+++.+      ++++++|.||+|+|++|+++++.++.+|++++++|+|.||++++|+.|||||+|||++.+.
T Consensus       236 ~~~~~~~~v~~~~------g~~i~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~  309 (450)
T 1ges_A          236 KNTDGSLTLELED------GRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAVE  309 (450)
T ss_dssp             ECTTSCEEEEETT------SCEEEESEEEECSCEEESCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECSGGGTSCC
T ss_pred             EeCCcEEEEEECC------CcEEEcCEEEECCCCCcCCCCCCchhcCceECCCCCEeECCCCccCCCCEEEEeccCCCCc
Confidence            76544 5666544      3479999999999999999865567889999999999999999999999999999998888


Q ss_pred             cHHHHHHHHHHHHHHhhCC
Q psy14927       1055 LAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1055 ~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      +++.|..+|+.+|.||++.
T Consensus       310 ~~~~A~~~g~~aa~~i~~~  328 (450)
T 1ges_A          310 LTPVAVAAGRRLSERLFNN  328 (450)
T ss_dssp             CHHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999874

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=99.97  E-value=5.8e-30  Score=305.94  Aligned_cols=273  Identities=19%  Similarity=0.250  Sum_probs=219.9

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccc------------------------------------cchhh
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVK------------------------------------LNLET  832 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~------------------------------------~~~~~  832 (1074)
                      +.+|+||||||+|+.+|+.|++     +++|+. ..||.                                    +++..
T Consensus        20 ~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~-~~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   98 (478)
T 3dk9_A           20 SYDYLVIGGGSGGLASARRAAELGARAAVVESH-KLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRV   98 (478)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCCCCCCCHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCCCCccCHHH
Confidence            4569999999999999999998     678865 34432                                    12223


Q ss_pred             hhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCC--CCCCCCcce
Q psy14927        833 MMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFP--GIEVDEETI  910 (1074)
Q Consensus       833 ~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ip--gi~~~~~~v  910 (1074)
                      +..+.......+...+...+...||+++.+++..+++..+.|. .+|  .++.||+||||||++|..++  .+++.. .+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~-~~g--~~~~~d~lviAtG~~p~~p~~~~i~G~~-~~  174 (478)
T 3dk9_A           99 IKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIE-VSG--KKYTAPHILIATGGMPSTPHESQIPGAS-LG  174 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEECSCSSCEEE-ETT--EEEECSCEEECCCEEECCCCTTTSTTGG-GS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEeeCCeEEEE-ECC--EEEEeeEEEEccCCCCCCCCcCCCCCCc-ee
Confidence            3333333444555556677788899999999999988776666 345  57999999999999874221  333322 56


Q ss_pred             echhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEE
Q psy14927        911 VSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTG  973 (1074)
Q Consensus       911 ~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~  973 (1074)
                      +++++++.+..                 |..+.++|.+||++++.++++ +.+++++.+.+.+.|++.||++++++.|++
T Consensus       175 ~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-~~~d~~~~~~~~~~l~~~gv~i~~~~~v~~  253 (478)
T 3dk9_A          175 ITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVLKFSQVKE  253 (478)
T ss_dssp             BCHHHHTTCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC-TTSCHHHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred             EchHHhhchhhcCccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccc-cccCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence            77888777653                 888899999999999999998 899999999999999999999999999999


Q ss_pred             EEecCCe--EEEEEeeccCCCC--ceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEeccc
Q psy14927        974 ASKSGDN--ITVTIENVKDPTK--KEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDC 1049 (1074)
Q Consensus       974 i~~~~~~--~~v~~~~~~~~g~--~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~ 1049 (1074)
                      ++.++++  +.+.+.+.. +|+  +.++++|.||+|+|++|+++.+.++.+|++++++|+|.||++++|++|||||+|||
T Consensus       254 i~~~~~~~~~~v~~~~~~-~g~~~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyA~GD~  332 (478)
T 3dk9_A          254 VKKTLSGLEVSMVTAVPG-RLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDV  332 (478)
T ss_dssp             EEECSSSEEEEEEECCTT-SCCEEEEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTCCBCCCTTCBCSSTTEEECGGG
T ss_pred             EEEcCCCcEEEEEEccCC-CCcccceEEEcCEEEEeeccccCCCCCCchhcCCeeCCCCCEeeCCCcccCCCCEEEEEec
Confidence            9876555  455555411 122  27899999999999999999776788999999999999999999999999999999


Q ss_pred             CCCCCcHHHHHHHHHHHHHHhhCC
Q psy14927       1050 IHGPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1050 ~~~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      ++.|.+++.|..+|+.+|.||++.
T Consensus       333 ~~~~~~~~~A~~~g~~aa~~i~~~  356 (478)
T 3dk9_A          333 CGKALLTPVAIAAGRKLAHRLFEY  356 (478)
T ss_dssp             GCSSCCHHHHHHHHHHHHHHHHSC
T ss_pred             CCCCccHhHHHHHHHHHHHHHcCC
Confidence            988999999999999999999975

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=99.97  E-value=6.7e-30  Score=305.69  Aligned_cols=274  Identities=21%  Similarity=0.300  Sum_probs=219.6

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhc---c------ccccc--------------------------------
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQA---G------DKGVK--------------------------------  827 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~---~------~~g~~--------------------------------  827 (1074)
                      +.+|+||||||+|+.||+.|++     +++|+.   +      ..||.                                
T Consensus         9 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~g~~~   88 (483)
T 3dgh_A            9 DYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAYGWNV   88 (483)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHhcCccc
Confidence            4569999999999999999998     788731   1      12322                                


Q ss_pred             -----cchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCC
Q psy14927        828 -----LNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPG  902 (1074)
Q Consensus       828 -----~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipg  902 (1074)
                           +++..+..+.....+.+...+...+...+|+++.+++.++++..+.|.+.+|. .++.||+||||||++|. +|.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~-~~~~~d~lviATGs~p~-~p~  166 (483)
T 3dgh_A           89 DDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGE-RTITAQTFVIAVGGRPR-YPD  166 (483)
T ss_dssp             CCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCC-EEEEEEEEEECCCEEEC-CCS
T ss_pred             CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEccCCEEEEEeCCCe-EEEEcCEEEEeCCCCcC-CCC
Confidence                 12333333333333444444556677889999999999999999999887774 57999999999999874 334


Q ss_pred             CCCCCcceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEE
Q psy14927        903 IEVDEETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQF  965 (1074)
Q Consensus       903 i~~~~~~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i  965 (1074)
                      +++....++++++++.+..                 |..+.++|.+||++++. .++ +.+++++.+.+.+.|++.||++
T Consensus       167 i~G~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l-~~~d~~~~~~l~~~l~~~Gv~i  244 (483)
T 3dgh_A          167 IPGAVEYGITSDDLFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRS-IVL-RGFDQQMAELVAASMEERGIPF  244 (483)
T ss_dssp             STTHHHHCBCHHHHTTCSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-CSS-TTSCHHHHHHHHHHHHHTTCCE
T ss_pred             CCCcccccCcHHHHhhhhhcCCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCC-CCC-cccCHHHHHHHHHHHHhCCCEE
Confidence            4444455678888876553                 88889999999999984 566 7899999999999999999999


Q ss_pred             EeCceEEEEEecCC-eEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEE
Q psy14927        966 KLGTKVTGASKSGD-NITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIF 1044 (1074)
Q Consensus       966 ~~~~~v~~i~~~~~-~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~Iy 1044 (1074)
                      ++++.+.++...++ .+.|++.+.. +++..++++|.||+|+|++|++++++++..|+++++ |+|.||++++|++||||
T Consensus       245 ~~~~~v~~i~~~~~~~~~v~~~~~~-~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~-G~i~vd~~~~t~~~~Iy  322 (483)
T 3dgh_A          245 LRKTVPLSVEKQDDGKLLVKYKNVE-TGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQK-DKIPVDSQEATNVANIY  322 (483)
T ss_dssp             EETEEEEEEEECTTSCEEEEEEETT-TCCEEEEEESEEEECSCEEECCGGGTGGGTTCCCBT-TBBCCCTTCBCSSTTEE
T ss_pred             EeCCEEEEEEEcCCCcEEEEEecCC-CCceeEEEcCEEEECcccccCcCcCCchhcCccccC-CEEEECcCCccCCCCEE
Confidence            99999999987544 3667777632 244568999999999999999998777899999998 99999999999999999


Q ss_pred             EecccC-CCCCcHHHHHHHHHHHHHHhhCC
Q psy14927       1045 AIGDCI-HGPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1045 AiGD~~-~~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      |+|||+ +.|.+++.|..+|+.+|.||+|.
T Consensus       323 A~GD~~~~~~~~~~~A~~~g~~aa~~i~g~  352 (483)
T 3dgh_A          323 AVGDIIYGKPELTPVAVLAGRLLARRLYGG  352 (483)
T ss_dssp             ECSTTBTTSCCCHHHHHHHHHHHHHHHHSC
T ss_pred             EEEcccCCCCccHHHHHHHHHHHHHHHcCC
Confidence            999998 55889999999999999999974

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=99.97  E-value=4.7e-30  Score=305.53  Aligned_cols=268  Identities=24%  Similarity=0.348  Sum_probs=218.6

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhcccccccc-------------------------------chhhhhhhhh
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL-------------------------------NLETMMGTKS  838 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~-------------------------------~~~~~~~~~~  838 (1074)
                      .+|+||||||+|+++|..|++     +++|+.+..||..                               ++..+..+..
T Consensus         5 ~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (466)
T 3l8k_A            5 YDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQDRKD   84 (466)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHHHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Confidence            459999999999999999998     7899777777653                               2223333333


Q ss_pred             HHHhhhh--hhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcceechhhH
Q psy14927        839 AAVKALT--GGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGA  916 (1074)
Q Consensus       839 ~~~~~l~--~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t~~~~  916 (1074)
                      ...+ +.  ..+...+.+.||+++.++++.++++.+.|.+.+|...++.||+||||||++|.. |.+++.. .+++++++
T Consensus        85 ~~~~-l~~~~~~~~~~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lviAtG~~p~~-p~i~G~~-~~~t~~~~  161 (466)
T 3l8k_A           85 YVQE-LRFKQHKRNMSQYETLTFYKGYVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETAK-LRLPGVE-YCLTSDDI  161 (466)
T ss_dssp             HHHH-HHHHHHHHHHTTCTTEEEESEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECC-CCCTTGG-GSBCHHHH
T ss_pred             hhee-ccccchHHHHHHhCCCEEEEeEEEEecCCeEEEEcCCCcEEEEecCEEEECCCCCccC-CCCCCcc-ceEeHHHH
Confidence            3333 33  556667778899999999999999999998888833339999999999998742 2233322 57888888


Q ss_pred             h----cchH-----------------hhHHhhcCCcEEEEecCCccCCCCC-CHHHHHHHHHHHHhCCCEEEeCceEEEE
Q psy14927        917 L----SLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGI-DGEVAKQFQRILGKQGMQFKLGTKVTGA  974 (1074)
Q Consensus       917 ~----~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~-~~~~~~~~~~~l~~~gV~i~~~~~v~~i  974 (1074)
                      +    .+..                 |..+.++|.+||++++.++++ +.+ ++++.+.+.+.++   |++++++.|+++
T Consensus       162 ~~~~~~l~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-~~~~d~~~~~~l~~~l~---v~i~~~~~v~~i  237 (466)
T 3l8k_A          162 FGYKTSFRKLPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRAL-ITLEDQDIVNTLLSILK---LNIKFNSPVTEV  237 (466)
T ss_dssp             HSTTCSCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC-TTSCCHHHHHHHHHHHC---CCEECSCCEEEE
T ss_pred             HHHHHHHhhCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCC-CCCCCHHHHHHHHhcCE---EEEEECCEEEEE
Confidence            7    3332                 888899999999999999998 666 9999999988877   999999999999


Q ss_pred             EecC-CeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCC
Q psy14927        975 SKSG-DNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGP 1053 (1074)
Q Consensus       975 ~~~~-~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~ 1053 (1074)
                      ..++ +++.+.+.+.  +|+..++++|.||+|+|++|+++ +.++..|++++++| |.||++++|++|||||+|||++.|
T Consensus       238 ~~~~~~~v~v~~~~~--~G~~~~i~~D~vi~a~G~~p~~~-l~l~~~gl~~~~~G-i~vd~~~~t~~~~Iya~GD~~~~~  313 (466)
T 3l8k_A          238 KKIKDDEYEVIYSTK--DGSKKSIFTNSVVLAAGRRPVIP-EGAREIGLSISKTG-IVVDETMKTNIPNVFATGDANGLA  313 (466)
T ss_dssp             EEEETTEEEEEECCT--TSCCEEEEESCEEECCCEEECCC-TTTGGGTCCBCSSS-BCCCTTCBCSSTTEEECGGGTCSC
T ss_pred             EEcCCCcEEEEEEec--CCceEEEEcCEEEECcCCCcccc-cchhhcCceeCCCC-EeECCCccCCCCCEEEEEecCCCC
Confidence            9876 6677776631  24456899999999999999999 55788999999999 999999999999999999999988


Q ss_pred             CcHHHHHHHHHHHHHHhhCC
Q psy14927       1054 MLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1054 ~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      +++..|..+|+.||.||++.
T Consensus       314 ~~~~~A~~~g~~aa~~i~~~  333 (466)
T 3l8k_A          314 PYYHAAVRMSIAAANNIMAN  333 (466)
T ss_dssp             CSHHHHHHHHHHHHHHHHTT
T ss_pred             ccHhHHHHHHHHHHHHHhCC
Confidence            89999999999999999974

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=99.97  E-value=5.4e-30  Score=304.46  Aligned_cols=265  Identities=21%  Similarity=0.344  Sum_probs=212.0

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhcccccccc------------------------------------chhhh
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL------------------------------------NLETM  833 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~------------------------------------~~~~~  833 (1074)
                      .+|+||||||+|+++|..|++     +++|+. ..|+..                                    ++..+
T Consensus         5 ~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~   83 (463)
T 2r9z_A            5 FDLIAIGGGSGGLAVAEKAAAFGKRVALIESK-ALGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQASGGTLDWPRL   83 (463)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC---CCHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEcCC-CCCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHHHH
Confidence            459999999999999999998     788876 444432                                    11111


Q ss_pred             hhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcceech
Q psy14927        834 MGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSS  913 (1074)
Q Consensus       834 ~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t~  913 (1074)
                      ..........+...+...+.+.||+++.|+++.+++..+.+   +|  .++.||+||||||++|.. |.+++. ..++++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~---~g--~~~~~d~lviAtGs~p~~-p~i~G~-~~~~~~  156 (463)
T 2r9z_A           84 VAGRDRYIGAINSFWDGYVERLGITRVDGHARFVDAHTIEV---EG--QRLSADHIVIATGGRPIV-PRLPGA-ELGITS  156 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEE---TT--EEEEEEEEEECCCEEECC-CSCTTG-GGSBCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCEEEEeEEEEccCCEEEE---CC--EEEEcCEEEECCCCCCCC-CCCCCc-cceecH
Confidence            22222222334444556677889999999988888765544   56  579999999999998742 334433 346777


Q ss_pred             hhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEe
Q psy14927        914 TGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASK  976 (1074)
Q Consensus       914 ~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~  976 (1074)
                      ++++.+..                 |..|.++|.+||++++.+.++ +.+++++...+.+.+++.||++++++.|.+++.
T Consensus       157 ~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l-~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~  235 (463)
T 2r9z_A          157 DGFFALQQQPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLL-FQFDPLLSATLAENMHAQGIETHLEFAVAALER  235 (463)
T ss_dssp             HHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-TTSCHHHHHHHHHHHHHTTCEEESSCCEEEEEE
T ss_pred             HHHhhhhccCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccc-cccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEE
Confidence            77766543                 888889999999999999988 789999999999999999999999999999998


Q ss_pred             cCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcH
Q psy14927        977 SGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLA 1056 (1074)
Q Consensus       977 ~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~ 1056 (1074)
                      +++++.|++.+    |+. ++++|.||+|+|++|+++++.++.+|++++++|+|.||++++|+.|||||+|||++.+.++
T Consensus       236 ~~~~~~v~~~~----G~~-~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~~~~  310 (463)
T 2r9z_A          236 DAQGTTLVAQD----GTR-LEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQNTNVPGVYALGDITGRDQLT  310 (463)
T ss_dssp             ETTEEEEEETT----CCE-EEEESEEEECSCEEESCTTSCHHHHTCCCCTTSCCCCCTTSBCSSTTEEECGGGGTSCCCH
T ss_pred             eCCeEEEEEeC----CcE-EEEcCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECCCCccCCCCEEEEeecCCCcccH
Confidence            66666666544    322 7999999999999999986556788999999999999999999999999999999888899


Q ss_pred             HHHHHHHHHHHHHhhCC
Q psy14927       1057 HKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1057 ~~A~~~G~~aA~~I~~~ 1073 (1074)
                      ..|..+|+.+|.||++.
T Consensus       311 ~~A~~~g~~aa~~i~g~  327 (463)
T 2r9z_A          311 PVAIAAGRRLAERLFDG  327 (463)
T ss_dssp             HHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHcCC
Confidence            99999999999999874

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=99.97  E-value=4.7e-30  Score=304.75  Aligned_cols=268  Identities=39%  Similarity=0.596  Sum_probs=216.4

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhccccccccc-----------------------------------hhhhhh
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLN-----------------------------------LETMMG  835 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~-----------------------------------~~~~~~  835 (1074)
                      +|+||||||+|+++|..+++     +++|+.+..|+...                                   +..+..
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~   82 (455)
T 2yqu_A            3 DLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKKGLLGAKVKGVELDLPALMA   82 (455)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHCCTTEEECCEEECHHHHHH
T ss_pred             CEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhhhcCCcccCCCccCHHHHHH
Confidence            49999999999999999998     78888766665421                                   111111


Q ss_pred             hhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcceechhh
Q psy14927        836 TKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTG  915 (1074)
Q Consensus       836 ~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t~~~  915 (1074)
                      +.....+.+...+...+.+.||+++.|+++.+++..+.|.+ +|  .++.||+||||||++|..+|..+.....++++++
T Consensus        83 ~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~-~g--~~~~~d~lviAtG~~p~~~~~~g~~~~~v~~~~~  159 (455)
T 2yqu_A           83 HKDKVVQANTQGVEFLFKKNGIARHQGTARFLSERKVLVEE-TG--EELEARYILIATGSAPLIPPWAQVDYERVVTSTE  159 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEETT-TC--CEEEEEEEEECCCEEECCCTTBCCCSSSEECHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEee-CC--EEEEecEEEECCCCCCCCCCCCCCCcCcEechHH
Confidence            22222223333445667778999999998888888777765 56  6899999999999987533322223336888888


Q ss_pred             HhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecC
Q psy14927        916 ALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSG  978 (1074)
Q Consensus       916 ~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~  978 (1074)
                      ++.+..                 |..|++.|.+||++++.+.++ +.+++++.+.+.+.+++.||+++++++|++++.++
T Consensus       160 ~~~~~~~~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l-~~~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~  238 (455)
T 2yqu_A          160 ALSFPEVPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRIL-PTMDLEVSRAAERVFKKQGLTIRTGVRVTAVVPEA  238 (455)
T ss_dssp             HTCCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC-TTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEEET
T ss_pred             hhccccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccc-cccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeC
Confidence            876543                 788889999999999999988 78999999999999999999999999999999876


Q ss_pred             CeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcHHH
Q psy14927        979 DNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHK 1058 (1074)
Q Consensus       979 ~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~~~ 1058 (1074)
                      +++.+++.+      +.++++|.||+|+|.+|+++++.++..|++++++|+|.||++++|+.|+|||+|||+..+++++.
T Consensus       239 ~~v~v~~~~------g~~i~~D~vv~A~G~~p~~~~l~~~~~g~~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~  312 (455)
T 2yqu_A          239 KGARVELEG------GEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHLRTRVPHIYAIGDVVRGPMLAHK  312 (455)
T ss_dssp             TEEEEEETT------SCEEEESEEEECSCEEECCTTCCGGGGTCCCCTTSCCCCCTTSBCSSTTEEECGGGSSSCCCHHH
T ss_pred             CEEEEEECC------CeEEEcCEEEECcCCCcCCCCCChhhcCCccCCCCcEeECCCcccCCCCEEEEecCCCCccCHHH
Confidence            666665543      45799999999999999998766678899998889999999999999999999999999989999


Q ss_pred             HHHHHHHHHHHhhCC
Q psy14927       1059 AEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1059 A~~~G~~aA~~I~~~ 1073 (1074)
                      |..+|+.+|.||++.
T Consensus       313 A~~~g~~aa~~i~~~  327 (455)
T 2yqu_A          313 ASEEGIAAVEHMVRG  327 (455)
T ss_dssp             HHHHHHHHHHHHHHS
T ss_pred             HHHhHHHHHHHHcCC
Confidence            999999999999863

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=99.97  E-value=1.1e-29  Score=302.26  Aligned_cols=266  Identities=22%  Similarity=0.348  Sum_probs=216.6

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhcccccccc------------------------------------chhhh
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL------------------------------------NLETM  833 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~------------------------------------~~~~~  833 (1074)
                      .+|+||||||+|+++|+.|++     +++|+ +..|+..                                    ++..+
T Consensus         6 ~DVvVIGaG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   84 (463)
T 4dna_A            6 YDLFVIGGGSGGVRSGRLAAALGKKVAIAEE-FRYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRFDWAKL   84 (463)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECCCEECHHHH
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCEEEEEeC-CCCCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCCCCcCHHHH
Confidence            459999999999999999998     78887 4455421                                    22223


Q ss_pred             hhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcceech
Q psy14927        834 MGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSS  913 (1074)
Q Consensus       834 ~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t~  913 (1074)
                      ..........+...+...+...||+++.+++..+++..+.+. .++  .++.||+||||||++|..+|.+++. ..++++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~~-~~~--~~~~~d~lviAtG~~p~~~p~i~G~-~~~~~~  160 (463)
T 4dna_A           85 VAAKEQEIARLEGLYRKGLANAGAEILDTRAELAGPNTVKLL-ASG--KTVTAERIVIAVGGHPSPHDALPGH-ELCITS  160 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEET-TTT--EEEEEEEEEECCCEEECCCTTSTTG-GGCBCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEe-cCC--eEEEeCEEEEecCCCcccCCCCCCc-cccccH
Confidence            333333334555556677778899999999999987655442 455  6899999999999987524445442 256788


Q ss_pred             hhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEe
Q psy14927        914 TGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASK  976 (1074)
Q Consensus       914 ~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~  976 (1074)
                      ++++.+..                 |..+.+.|.+||++++.+.++ +.+++++.+.+.+.+++.||++++++.|.++..
T Consensus       161 ~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l-~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~  239 (463)
T 4dna_A          161 NEAFDLPALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEIL-SRFDQDMRRGLHAAMEEKGIRILCEDIIQSVSA  239 (463)
T ss_dssp             HHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-TTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEE
T ss_pred             HHHhhhhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc-cccCHHHHHHHHHHHHHCCCEEECCCEEEEEEE
Confidence            88777643                 778889999999999999998 889999999999999999999999999999998


Q ss_pred             cCCe-EEEE-EeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCC
Q psy14927        977 SGDN-ITVT-IENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPM 1054 (1074)
Q Consensus       977 ~~~~-~~v~-~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~ 1054 (1074)
                      ++++ +.|. +.+      ++ +++|.||+|+|++|++.+++++..|++++++|+|.||++++|++|||||+|||++.++
T Consensus       240 ~~~~~~~v~~~~~------g~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~  312 (463)
T 4dna_A          240 DADGRRVATTMKH------GE-IVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRTSTPGIYALGDVTDRVQ  312 (463)
T ss_dssp             CTTSCEEEEESSS------CE-EEESEEEECSCEEESCTTSSTGGGTCCBCTTSCBCCCTTCBCSSTTEEECSGGGSSCC
T ss_pred             cCCCEEEEEEcCC------Ce-EEeCEEEEeeCcccCCCCCCccccCceECCCCCEeECcCCCCCCCCEEEEEecCCCCC
Confidence            6555 4555 433      34 9999999999999999987778899999999999999999999999999999999888


Q ss_pred             cHHHHHHHHHHHHHHhhCC
Q psy14927       1055 LAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1055 ~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      +++.|..+|+.+|.||++.
T Consensus       313 ~~~~A~~~g~~aa~~i~g~  331 (463)
T 4dna_A          313 LTPVAIHEAMCFIETEYKN  331 (463)
T ss_dssp             CHHHHHHHHHHHHHHHHSS
T ss_pred             ChHHHHHHHHHHHHHHcCC
Confidence            9999999999999999974

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=99.97  E-value=3.4e-29  Score=298.42  Aligned_cols=268  Identities=24%  Similarity=0.367  Sum_probs=213.3

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccc-------------------------------------hh
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLN-------------------------------------LE  831 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~-------------------------------------~~  831 (1074)
                      +.+||||||||+|+++|+.|++     +++|+. ..|+...                                     +.
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   82 (467)
T 1zk7_A            4 PVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDRS   82 (467)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-STTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCCCCCCCHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC-CCCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCCCCccCHH
Confidence            3459999999999999999998     788876 4443311                                     11


Q ss_pred             hhhhhhhHHHhhhhh-hHHHHhhhC-CeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCCCC
Q psy14927        832 TMMGTKSAAVKALTG-GIAHLFKSN-KVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVDE  907 (1074)
Q Consensus       832 ~~~~~~~~~~~~l~~-~~~~~l~~~-gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~  907 (1074)
                      .+..........+.. .+...+.+. ||+++.|+++.+++..+.|.+.+|...++.||+||||||++|.  ++||++  .
T Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~G~~--~  160 (467)
T 1zk7_A           83 KLLAQQQARVDELRHAKYEGILGGNPAITVVHGEARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPAVPPIPGLK--E  160 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEEEEEEETTEEEEEETTSSEEEEECSEEEECCCEEECCCCCTTTT--T
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEEEEEccCCEEEEEeCCCceEEEEeCEEEEeCCCCCCCCCCCCCC--c
Confidence            111111111111211 234556677 9999999999999998988888775567999999999999874  344442  2


Q ss_pred             cceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCce
Q psy14927        908 ETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTK  970 (1074)
Q Consensus       908 ~~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~  970 (1074)
                      ..++++++++.+..                 |..+.++|.+||++++.++++ + +++++.+.+.+.+++.||++++++.
T Consensus       161 ~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-~-~~~~~~~~l~~~l~~~Gv~i~~~~~  238 (467)
T 1zk7_A          161 SPYWTSTEALASDTIPERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFF-R-EDPAIGEAVTAAFRAEGIEVLEHTQ  238 (467)
T ss_dssp             SCCBCHHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT-T-SCHHHHHHHHHHHHHTTCEEETTCC
T ss_pred             CceecHHHHhcccccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccC-C-CCHHHHHHHHHHHHhCCCEEEcCCE
Confidence            34678888776542                 778889999999999999998 6 9999999999999999999999999


Q ss_pred             EEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccC
Q psy14927        971 VTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCI 1050 (1074)
Q Consensus       971 v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~ 1050 (1074)
                      |.++..+++.+.+.+.       +.++++|.||+|+|++|+++++.++..|++++++|+|.||++++|+.|+|||+|||+
T Consensus       239 v~~i~~~~~~~~v~~~-------~~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~  311 (467)
T 1zk7_A          239 ASQVAHMDGEFVLTTT-------HGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQGMRTSNPNIYAAGDCT  311 (467)
T ss_dssp             EEEEEEETTEEEEEET-------TEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTTEEECSTTB
T ss_pred             EEEEEEeCCEEEEEEC-------CcEEEcCEEEECCCCCcCCCcCCchhcCCcCCCCCCEEECCCcccCCCCEEEEeccC
Confidence            9999886665555432       247999999999999999987656788999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHhhCC
Q psy14927       1051 HGPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1051 ~~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      ..|.+++.|..+|+.+|.||++.
T Consensus       312 ~~~~~~~~A~~~g~~aa~~i~~~  334 (467)
T 1zk7_A          312 DQPQFVYVAAAAGTRAAINMTGG  334 (467)
T ss_dssp             SSCCCHHHHHHHHHHHHHHHTTC
T ss_pred             CCcccHHHHHHHHHHHHHHHcCC
Confidence            99889999999999999999864

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=99.97  E-value=4e-30  Score=303.02  Aligned_cols=264  Identities=19%  Similarity=0.260  Sum_probs=201.6

Q ss_pred             hhhhhccccchHHHHHHHhh-------hhhhhccccccc-cchhhhhhhhh-HHHhhhhhhHHHHhhhCCeEEEee-eEE
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVK-LNLETMMGTKS-AAVKALTGGIAHLFKSNKVTQLNG-HGK  865 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~-~~~~~~~~~~~-~~~~~l~~~~~~~l~~~gV~~~~g-~v~  865 (1074)
                      +||||||||||++||.+|++       +++++.+..... ..++....... .....+......++.+.||+++.+ +|+
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~   81 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVVEDRRYALAYTPEKFYDRKQITVKTYHEVI   81 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGGHHHHHTTSSCCGGGTBCCCHHHHHHHHCCEEEETEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcchhHHHHcCCccchhhhhhcCHHHHHHhcCCEEEeCCeEE
Confidence            39999999999999999987       577776644321 11221111111 111122223455667789999988 688


Q ss_pred             EecCCeEEEEe---CCCCeeEEEcCeEEEccCCCCCCCCCCCCCCccee-chhhHhcchH--------------------
Q psy14927        866 ITGPNTVTVIK---SDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIV-SSTGALSLKK--------------------  921 (1074)
Q Consensus       866 ~id~~~~~v~~---~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~-t~~~~~~~~~--------------------  921 (1074)
                      .+|.....+.+   .+++..++.||+||||||++|. .|++++...+.+ +.++...+..                    
T Consensus        82 ~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~-~p~i~g~~~~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~ig~  160 (437)
T 4eqs_A           82 AINDERQTVSVLNRKTNEQFEESYDKLILSPGASAN-SLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSL  160 (437)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEECSEEEECCCEEEC-CCCCCCTTEECCSSHHHHHHHHHHHHHHTCCEEEEECCSHHHH
T ss_pred             EEEccCcEEEEEeccCCceEEEEcCEEEECCCCccc-cccccCceEEeeccHHHHHHHHHhhhccCCcEEEEECCccchh
Confidence            89876544443   2344467999999999999984 556765544322 3333332211                    


Q ss_pred             --hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEc
Q psy14927        922 --GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSC  999 (1074)
Q Consensus       922 --A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~  999 (1074)
                        |..+.++|.+||++++.++++ +.+++++.+.+.+.+++.||++++++.|+++++.    .+.+++      ++++++
T Consensus       161 E~A~~l~~~g~~Vtlv~~~~~ll-~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~~~~~----~v~~~~------g~~~~~  229 (437)
T 4eqs_A          161 EVLENLYERGLHPTLIHRSDKIN-KLMDADMNQPILDELDKREIPYRLNEEINAINGN----EITFKS------GKVEHY  229 (437)
T ss_dssp             HHHHHHHHHTCEEEEEESSSCCS-TTSCGGGGHHHHHHHHHTTCCEEESCCEEEEETT----EEEETT------SCEEEC
T ss_pred             hhHHHHHhcCCcceeeeeecccc-ccccchhHHHHHHHhhccceEEEeccEEEEecCC----eeeecC------CeEEee
Confidence              888899999999999999999 8899999999999999999999999999998763    255544      468999


Q ss_pred             CEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCC----------CCcHHHHHHHHHHHHHH
Q psy14927       1000 DALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHG----------PMLAHKAEDEGIVCVEG 1069 (1074)
Q Consensus      1000 D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~----------~~~~~~A~~~G~~aA~~ 1069 (1074)
                      |.||+++|++||+++  ++..|++++++|+|.||+++|||+|||||+|||++.          +++++.|..||+++|.|
T Consensus       230 D~vl~a~G~~Pn~~~--~~~~gl~~~~~G~I~vd~~~~Ts~p~IyA~GDva~~~~~~~~~~~~~~~a~~A~~~g~~~a~n  307 (437)
T 4eqs_A          230 DMIIEGVGTHPNSKF--IESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRAASIVAEQ  307 (437)
T ss_dssp             SEEEECCCEEESCGG--GTTSSCCCCTTSCEECCTTCBCSSTTEEECGGGEEEEBSSSSSEECCCSHHHHHHHHHHHHHH
T ss_pred             eeEEEEeceecCcHH--HHhhhhhhccCCcEecCCCccCCCCCEEEEEEccCcccccCCccccchhHHHHHHHHHHHHHH
Confidence            999999999999987  678899999999999999999999999999999863          34789999999999999


Q ss_pred             hhCC
Q psy14927       1070 IAGD 1073 (1074)
Q Consensus      1070 I~~~ 1073 (1074)
                      |+|.
T Consensus       308 i~g~  311 (437)
T 4eqs_A          308 IAGN  311 (437)
T ss_dssp             HHSC
T ss_pred             HcCC
Confidence            9985

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=99.96  E-value=1.4e-29  Score=302.98  Aligned_cols=267  Identities=20%  Similarity=0.308  Sum_probs=217.6

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhcccccccc------------------------------------chhhh
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL------------------------------------NLETM  833 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~------------------------------------~~~~~  833 (1074)
                      .+|+||||||+|+++|+.|++     +++|+ +..|+..                                    ++..+
T Consensus        27 ~DVvVIGgG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~  105 (484)
T 3o0h_A           27 FDLFVIGSGSGGVRAARLAGALGKRVAIAEE-YRIGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYADPIFNWEKL  105 (484)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCCCCEECHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHhCcCEEEEEeC-CCCCCceeccCccccHHHHHHHHHHHHHHHHHhCCcccCCCccCHHHH
Confidence            469999999999999999998     78888 4444432                                    22223


Q ss_pred             hhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcceech
Q psy14927        834 MGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSS  913 (1074)
Q Consensus       834 ~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t~  913 (1074)
                      ..........+...+...+...||+++.+++..+++..+.+. .++  .++.||+||||||+.|..+|.+++.. .++++
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~v~-~~~--~~~~~d~lviAtG~~p~~~p~i~G~~-~~~~~  181 (484)
T 3o0h_A          106 VAAKNKEISRLEGLYREGLQNSNVHIYESRAVFVDEHTLELS-VTG--ERISAEKILIATGAKIVSNSAIKGSD-LCLTS  181 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEET-TTC--CEEEEEEEEECCCEEECCC--CBTGG-GSBCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEe-cCC--eEEEeCEEEEccCCCcccCCCCCCcc-ccccH
Confidence            333333444555567777888999999999999998765542 255  68999999999999875244454432 46677


Q ss_pred             hhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEe
Q psy14927        914 TGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASK  976 (1074)
Q Consensus       914 ~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~  976 (1074)
                      ++++.+..                 |..+.+.|.+|+++++.+.++ +.+++++...+.+.+++.||++++++.|.+++.
T Consensus       182 ~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-~~~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~  260 (484)
T 3o0h_A          182 NEIFDLEKLPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLIL-RNFDYDLRQLLNDAMVAKGISIIYEATVSQVQS  260 (484)
T ss_dssp             TTGGGCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-TTSCHHHHHHHHHHHHHHTCEEESSCCEEEEEE
T ss_pred             HHHHhHHhcCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCccc-cccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEe
Confidence            77666532                 778889999999999999998 789999999999999999999999999999998


Q ss_pred             cCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcH
Q psy14927        977 SGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLA 1056 (1074)
Q Consensus       977 ~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~ 1056 (1074)
                      +++++.|.+.+      ++++++|.||+|+|++|++.++.+...|++++++|+|.||++++|++|||||+|||++.++++
T Consensus       261 ~~~~v~v~~~~------g~~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~~~~  334 (484)
T 3o0h_A          261 TENCYNVVLTN------GQTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTTNVSHIWAVGDVTGHIQLT  334 (484)
T ss_dssp             CSSSEEEEETT------SCEEEESEEEECCCEEECCTTCCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGGTSCCCH
T ss_pred             eCCEEEEEECC------CcEEEcCEEEEeeCCCcCCCCCChhhcCceECCCCCEeECCCCCCCCCCEEEEEecCCCCcCH
Confidence            76667676654      358999999999999999998777889999999999999999999999999999999988899


Q ss_pred             HHHHHHHHHHHHHhhCC
Q psy14927       1057 HKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1057 ~~A~~~G~~aA~~I~~~ 1073 (1074)
                      +.|..+|+.+|.||++.
T Consensus       335 ~~A~~~g~~aa~~i~~~  351 (484)
T 3o0h_A          335 PVAIHDAMCFVKNAFEN  351 (484)
T ss_dssp             HHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHcCC
Confidence            99999999999999974

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.96  E-value=3.4e-29  Score=297.28  Aligned_cols=265  Identities=29%  Similarity=0.439  Sum_probs=211.6

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhcccccccc---------------------------------------c
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL---------------------------------------N  829 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~---------------------------------------~  829 (1074)
                      +.+|+||||||||++||..+++     +++|+ +..||..                                       +
T Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   83 (458)
T 1lvl_A            5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRLD   83 (458)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEcc-CCCCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCcccCCCccC
Confidence            3459999999999999999998     78887 4554432                                       1


Q ss_pred             hhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcc
Q psy14927        830 LETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEET  909 (1074)
Q Consensus       830 ~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~  909 (1074)
                      +..+..+.....+.+...+...+++.||+++.|+++.+++..+.+  .+   .++.||+||||||++|..+|+++.+. .
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v--~~---~~~~~d~lviATGs~p~~~~~~~~~~-~  157 (458)
T 1lvl_A           84 IGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEV--DG---QRIQCEHLLLATGSSSVELPMLPLGG-P  157 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEETTEEEE--TT---EEEECSEEEECCCEEECCBTTBCCBT-T
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEccCCEEEE--ee---EEEEeCEEEEeCCCCCCCCCCCCccC-c
Confidence            122222222222333334556778899999999888887765443  33   57999999999999986555555332 6


Q ss_pred             eechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEE
Q psy14927        910 IVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVT  972 (1074)
Q Consensus       910 v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~  972 (1074)
                      ++++.+++.+..                 |..|++.|.+||++++.++++ +.+++++.+.+.+.+++.||++++++.|+
T Consensus       158 v~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-~~~~~~~~~~l~~~l~~~gv~i~~~~~v~  236 (458)
T 1lvl_A          158 VISSTEALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERIL-PTYDSELTAPVAESLKKLGIALHLGHSVE  236 (458)
T ss_dssp             EECHHHHTCCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS-TTSCHHHHHHHHHHHHHHTCEEETTCEEE
T ss_pred             EecHHHHhhhhccCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccc-cccCHHHHHHHHHHHHHCCCEEEECCEEE
Confidence            888888887643                 888889999999999999998 78999999999999999999999999999


Q ss_pred             EEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCC
Q psy14927        973 GASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHG 1052 (1074)
Q Consensus       973 ~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~ 1052 (1074)
                      +++. + .+.++  . . +|+..++++|.||+|+|++|+++++.++..|++++++ +|.||++++|+.|+|||+|||+..
T Consensus       237 ~i~~-~-~v~v~--~-~-~G~~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~-~i~vd~~~~t~~~~Iya~GD~~~~  309 (458)
T 1lvl_A          237 GYEN-G-CLLAN--D-G-KGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGA-AIAIDERCQTSMHNVWAIGDVAGE  309 (458)
T ss_dssp             EEET-T-EEEEE--C-S-SSCCCEECCSCEEECCCEEECCSSSSGGGSCCCEETT-EECCCTTCBCSSTTEEECGGGGCS
T ss_pred             EEEe-C-CEEEE--E-C-CCceEEEECCEEEECcCCCcCCCCCCcHhcCCcccCC-EEeECCCCcCCCCCEEEeeccCCC
Confidence            9987 3 34443  2 1 2444789999999999999999976568889998887 999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHHhhCC
Q psy14927       1053 PMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1053 ~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      |++++.|..+|+.+|.||+|.
T Consensus       310 ~~~~~~A~~~g~~aa~~i~g~  330 (458)
T 1lvl_A          310 PMLAHRAMAQGEMVAEIIAGK  330 (458)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTC
T ss_pred             cccHHHHHHHHHHHHHHhcCC
Confidence            889999999999999999874

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.96  E-value=2.8e-29  Score=301.27  Aligned_cols=268  Identities=22%  Similarity=0.312  Sum_probs=200.3

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhcccccccc-----------------------------------chhhhhh
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL-----------------------------------NLETMMG  835 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~-----------------------------------~~~~~~~  835 (1074)
                      +||||||||+|+++|..+++     +++|+.. .|+..                                   ++..+..
T Consensus         4 dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~   82 (500)
T 1onf_A            4 DLIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPLLVE   82 (500)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC-cCccccccCCcchHHHHHHHHHHHHHHhhHhcCCccCCccCHHHHHH
Confidence            49999999999999999998     7888764 44331                                   1111111


Q ss_pred             hhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeC---------CCCeeEEEcCeEEEccCCCCCCCCCCCCC
Q psy14927        836 TKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKS---------DGSTEEVKTKNILIATGSEVTPFPGIEVD  906 (1074)
Q Consensus       836 ~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~---------~G~~~~i~~d~lIIATG~~p~~ipgi~~~  906 (1074)
                      ........+...+...+.+.||+++.++++.+++..+.+...         ++...++.||+||||||++|. +|.+++.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~id~~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs~p~-~p~i~G~  161 (500)
T 1onf_A           83 RRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPV-FPPVKGI  161 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCCCBC-CCSCTTG
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeccccccccccCCCceEEEeCEEEECCCCCCC-CCCCCCC
Confidence            122222344444566677889999999887777655444320         011257999999999999984 3334433


Q ss_pred             CcceechhhHhcchH----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCce
Q psy14927        907 EETIVSSTGALSLKK----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTK  970 (1074)
Q Consensus       907 ~~~v~t~~~~~~~~~----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~  970 (1074)
                       ..++++++++.+..                |..|.++|.+||++++.++++ +.+++++...+.+.|++.||++++++.
T Consensus       162 -~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l-~~~d~~~~~~l~~~l~~~gv~i~~~~~  239 (500)
T 1onf_A          162 -ENTISSDEFFNIKESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL-RKFDESVINVLENDMKKNNINIVTFAD  239 (500)
T ss_dssp             -GGCEEHHHHTTCCCCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC-TTSCHHHHHHHHHHHHHTTCEEECSCC
T ss_pred             -CcccCHHHHhccCCCCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccC-cccchhhHHHHHHHHHhCCCEEEECCE
Confidence             35678888776541                888889999999999999999 789999999999999999999999999


Q ss_pred             EEEEEecCCe-EEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEeccc
Q psy14927        971 VTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDC 1049 (1074)
Q Consensus       971 v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~ 1049 (1074)
                      |+++.+++++ +.+++.+    |+. ++++|.||+|+|++|+++.+.++.+|+++ ++|+|.||++++|+.|+|||+|||
T Consensus       240 v~~i~~~~~~~~~v~~~~----g~~-~~~~D~vi~a~G~~p~~~~l~~~~~g~~~-~~G~i~vd~~~~t~~~~iya~GD~  313 (500)
T 1onf_A          240 VVEIKKVSDKNLSIHLSD----GRI-YEHFDHVIYCVGRSPDTENLKLEKLNVET-NNNYIVVDENQRTSVNNIYAVGDC  313 (500)
T ss_dssp             EEEEEESSTTCEEEEETT----SCE-EEEESEEEECCCBCCTTTTSSCTTTTCCB-SSSCEEECTTCBCSSSSEEECSTT
T ss_pred             EEEEEEcCCceEEEEECC----CcE-EEECCEEEECCCCCcCCCCCCchhcCccc-cCCEEEECCCcccCCCCEEEEecc
Confidence            9999875433 5666543    321 39999999999999999765567889998 789999999999999999999999


Q ss_pred             C----------------------------------CCCCcHHHHHHHHHHHHHHhhCC
Q psy14927       1050 I----------------------------------HGPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1050 ~----------------------------------~~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      +                                  ..+++++.|..||+.+|.||++.
T Consensus       314 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~  371 (500)
T 1onf_A          314 CMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLFLK  371 (500)
T ss_dssp             EEEC------------------------------CBCCCCHHHHHHHHHHHHHHHHSC
T ss_pred             ccccccccccccccccccccccccccccccccccCCcccchhHHHHHHHHHHHHHhCC
Confidence            9                                  45678999999999999999873

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=99.96  E-value=4.3e-29  Score=298.93  Aligned_cols=269  Identities=22%  Similarity=0.261  Sum_probs=214.1

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhcccccccc------------------------------------chhhh
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL------------------------------------NLETM  833 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~------------------------------------~~~~~  833 (1074)
                      .+|+||||||||++||..+++     +++|+.. .||..                                    ++..+
T Consensus         9 ~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~-~GGtc~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~   87 (492)
T 3ic9_A            9 VDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA-YGTTCARVGCMPSKLLIAAADASYHASQTDLFGIQVDRISVNGKAV   87 (492)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC-SSCHHHHHSHHHHHHHHHHHHHHHHHTCGGGGTEECSEEEECHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC-CCCcccccChhcCHHHHHHHHHHHHHhhhhhcCcCCCCCccCHHHH
Confidence            469999999999999999998     7888754 44421                                    11111


Q ss_pred             hhhhhHHHhhhhhhHHHHhhhC-CeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcceec
Q psy14927        834 MGTKSAAVKALTGGIAHLFKSN-KVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVS  912 (1074)
Q Consensus       834 ~~~~~~~~~~l~~~~~~~l~~~-gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t  912 (1074)
                      ..+.....+.+...+...+... +++++.|++.++++..+.  +.++  .++.||+||||||++|..+|..+.....+++
T Consensus        88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a~~~~~~~v~--~~~~--~~~~~d~lViATGs~p~~p~~~~~~~~~v~t  163 (492)
T 3ic9_A           88 MKRIQTERDRFVGFVVESVESFDEQDKIRGFAKFLDEHTLQ--VDDH--SQVIAKRIVIATGSRPNYPEFLAAAGSRLLT  163 (492)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCGGGEEESCEEEEETTEEE--ETTT--EEEEEEEEEECCCEECCCCHHHHTTGGGEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEEEEecCCEEE--EcCC--cEEEeCEEEEccCCCCcCCCCCCccCCcEEc
Confidence            1222222222222222333333 678899998888877554  4566  6899999999999998533323334567889


Q ss_pred             hhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEE
Q psy14927        913 STGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGAS  975 (1074)
Q Consensus       913 ~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~  975 (1074)
                      +++++.+..                 |..|.++|.+||++++.++++ +.+++++.+.+.+.|++. |++++++.+++++
T Consensus       164 ~~~~~~~~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l-~~~d~~~~~~l~~~l~~~-V~i~~~~~v~~i~  241 (492)
T 3ic9_A          164 NDNLFELNDLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVA-NLQDEEMKRYAEKTFNEE-FYFDAKARVISTI  241 (492)
T ss_dssp             HHHHTTCSSCCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCT-TCCCHHHHHHHHHHHHTT-SEEETTCEEEEEE
T ss_pred             HHHHhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccc-ccCCHHHHHHHHHHHhhC-cEEEECCEEEEEE
Confidence            999887653                 888999999999999999998 789999999999999988 9999999999999


Q ss_pred             ecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeC-CCCCCCCCCEEEecccCCCCC
Q psy14927        976 KSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVN-SRFQTVIPNIFAIGDCIHGPM 1054 (1074)
Q Consensus       976 ~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd-~~~~ts~~~IyAiGD~~~~~~ 1054 (1074)
                      .+++++.+++.+.  +|+..++++|.||+|+|++|++++++++..|++++++|+|.|| ++++|+.|||||+|||++.++
T Consensus       242 ~~~~~v~v~~~~~--~G~~~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~~t~~~~IyA~GD~~~~~~  319 (492)
T 3ic9_A          242 EKEDAVEVIYFDK--SGQKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDELTLQTSVDHIFVAGDANNTLT  319 (492)
T ss_dssp             ECSSSEEEEEECT--TCCEEEEEESEEEECSCCEESCSSSCGGGSCCCBCTTCCBCCCTTTCBCSSTTEEECGGGGTSSC
T ss_pred             EcCCEEEEEEEeC--CCceEEEECCEEEEeeCCccCCCCCChhhcCCEECCCCCEeECcccccCCCCCEEEEEecCCCCc
Confidence            8777777777631  2444789999999999999999998788999999999999999 999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHhhC
Q psy14927       1055 LAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus      1055 ~~~~A~~~G~~aA~~I~~ 1072 (1074)
                      +++.|..+|+.||.||++
T Consensus       320 ~~~~A~~~g~~aa~~i~~  337 (492)
T 3ic9_A          320 LLHEAADDGKVAGTNAGA  337 (492)
T ss_dssp             SHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHcC
Confidence            999999999999999986

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=99.96  E-value=1.8e-29  Score=301.76  Aligned_cols=277  Identities=18%  Similarity=0.194  Sum_probs=199.9

Q ss_pred             CCCCCccchhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHh--hhCCeEE
Q psy14927        787 PPESDDQRQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLF--KSNKVTQ  859 (1074)
Q Consensus       787 ~~~~~~~k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l--~~~gV~~  859 (1074)
                      .|...+ |++|||||||+||+.+|..|++     +|+++.+.+..++.++.+..+.-.. ..+...+...+  ...+|+|
T Consensus        36 ~p~~~~-KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~~~~PlL~~va~G~l~~-~~i~~p~~~~~~~~~~~v~~  113 (502)
T 4g6h_A           36 DPQHSD-KPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDE-KSIIEPIVNFALKKKGNVTY  113 (502)
T ss_dssp             CCCSCS-SCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEEECGGGGGGTTTTSSCG-GGGEEEHHHHHTTCSSCEEE
T ss_pred             CCCCCC-CCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCcccccchhHHhhccccH-HHhhhhHHHHHHhhcCCeEE
Confidence            344444 6779999999999999999987     7888877655454444443332111 33333344433  3458999


Q ss_pred             EeeeEEEecCCeEEEEeCC------------------CCeeEEEcCeEEEccCCCCCCCCCCCCCCccee---chhhHhc
Q psy14927        860 LNGHGKITGPNTVTVIKSD------------------GSTEEVKTKNILIATGSEVTPFPGIEVDEETIV---SSTGALS  918 (1074)
Q Consensus       860 ~~g~v~~id~~~~~v~~~~------------------G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~---t~~~~~~  918 (1074)
                      +.++|+.||++..+|++.+                  ++..++.||+||||||+.|. .|++|+..++.+   +..+...
T Consensus       114 ~~~~v~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~-~~~ipG~~e~a~~l~t~~dA~~  192 (502)
T 4g6h_A          114 YEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPN-TFGIPGVTDYGHFLKEIPNSLE  192 (502)
T ss_dssp             EEEEEEEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEEC-CTTCTTHHHHCEECSSHHHHHH
T ss_pred             EEEEEEEEEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCcccc-cCCccCcccccCCCCCHHHHHH
Confidence            9999999998766665421                  22368999999999999874 223433222222   3333322


Q ss_pred             chH-------------------------------------hhHHhhc--------------CCcEEEEecCCccCCCCCC
Q psy14927        919 LKK-------------------------------------GSVWGRL--------------GAEVTAIEFMNAIGGMGID  947 (1074)
Q Consensus       919 ~~~-------------------------------------A~~l~~~--------------G~~Vtlv~~~~~~~~~~~~  947 (1074)
                      +..                                     |..+.++              ..+|||+++.++++ +.++
T Consensus       193 ir~~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il-~~~~  271 (502)
T 4g6h_A          193 IRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVL-NMFE  271 (502)
T ss_dssp             HHHHHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSS-TTSC
T ss_pred             HHHHHHHHHHHHhcccccchhhccccceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccc-cCCC
Confidence            211                                     3333322              26899999999999 8899


Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCC--ceEEEcCEEEEccCCcccCCccC-ccccCccc
Q psy14927        948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTK--KEELSCDALLVCVGRRPYTHNLG-LEEIGIEK 1024 (1074)
Q Consensus       948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~--~~~i~~D~vi~a~G~~p~~~~l~-l~~~gl~l 1024 (1074)
                      +++++.+.+.|++.||++++++.|+++++  +++.+.....  +|+  ++++++|+||||+|.+|++..-. ....++..
T Consensus       272 ~~~~~~~~~~L~~~GV~v~~~~~v~~v~~--~~~~~~~~~~--dg~~~~~~i~ad~viwa~Gv~~~~~~~~l~~~~~~~~  347 (502)
T 4g6h_A          272 KKLSSYAQSHLENTSIKVHLRTAVAKVEE--KQLLAKTKHE--DGKITEETIPYGTLIWATGNKARPVITDLFKKIPEQN  347 (502)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTEEEEEECS--SEEEEEEECT--TSCEEEEEEECSEEEECCCEECCHHHHHHHHHSGGGT
T ss_pred             HHHHHHHHHHHHhcceeeecCceEEEEeC--CceEEEEEec--CcccceeeeccCEEEEccCCcCCHHHHhHHHhccccc
Confidence            99999999999999999999999999976  4444443321  232  35799999999999999842111 34556777


Q ss_pred             CCCCCeeeCCCCCC-CCCCEEEecccCCC--CCcHHHHHHHHHHHHHHhh
Q psy14927       1025 DEKGRVPVNSRFQT-VIPNIFAIGDCIHG--PMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1025 d~~G~I~Vd~~~~t-s~~~IyAiGD~~~~--~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                      +.+|+|.||+++|| ++|||||+|||+..  |++++.|.+||..+|+||.
T Consensus       348 ~~~g~I~Vd~~lq~~~~~~IfAiGD~a~~~~p~~a~~A~qqg~~~A~ni~  397 (502)
T 4g6h_A          348 SSKRGLAVNDFLQVKGSNNIFAIGDNAFAGLPPTAQVAHQEAEYLAKNFD  397 (502)
T ss_dssp             TCCSSEEBCTTSBBTTCSSEEECGGGEESSSCCCHHHHHHHHHHHHHHHH
T ss_pred             cCCCceeECCccccCCCCCEEEEEcccCCCCCCchHHHHHHHHHHHHHHH
Confidence            88899999999998 89999999999864  6789999999999999985

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=99.96  E-value=9.5e-29  Score=298.19  Aligned_cols=265  Identities=20%  Similarity=0.298  Sum_probs=208.6

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhh-hhh---------------------------h---h
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLET-MMG---------------------------T---K  837 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~-~~~---------------------------~---~  837 (1074)
                      +.+||||||||+|+++|.+|++     +++|+.+..|+...... ++.                           .   .
T Consensus        43 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  122 (523)
T 1mo9_A           43 EYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGI  122 (523)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCCCH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHHHHhhhhhH
Confidence            4569999999999999999998     78998876666432211 110                           0   1


Q ss_pred             hHHHhhhhhhHH---HHh-----hhCCeEEE-eeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCC-C
Q psy14927        838 SAAVKALTGGIA---HLF-----KSNKVTQL-NGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVD-E  907 (1074)
Q Consensus       838 ~~~~~~l~~~~~---~~l-----~~~gV~~~-~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~-~  907 (1074)
                      ......+...+.   ..+     ...||+++ .++++.+++..+.+  . |  .++.||+||||||++|.. |.+++. .
T Consensus       123 ~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~v~~--~-g--~~~~~d~lViATGs~p~~-p~i~G~~~  196 (523)
T 1mo9_A          123 KEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHTVEA--A-G--KVFKAKNLILAVGAGPGT-LDVPGVNA  196 (523)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEETTEEEE--T-T--EEEEBSCEEECCCEECCC-CCSTTTTS
T ss_pred             HHHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeCCEEEE--C-C--EEEEeCEEEECCCCCCCC-CCCCCccc
Confidence            112222222223   555     77899999 78899998865544  3 5  579999999999998742 223332 2


Q ss_pred             cceechhhHh-cch----H--------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeC
Q psy14927        908 ETIVSSTGAL-SLK----K--------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLG  968 (1074)
Q Consensus       908 ~~v~t~~~~~-~~~----~--------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~  968 (1074)
                      ..++++.+++ .+.    +              |..+.+.|.+||++++.+.++ +.+++++...+.+.+++.||+++++
T Consensus       197 ~~v~~~~~~~~~l~~~~g~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l-~~~~~~~~~~l~~~l~~~GV~i~~~  275 (523)
T 1mo9_A          197 KGVFDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK-LIKDNETRAYVLDRMKEQGMEIISG  275 (523)
T ss_dssp             BTEEEHHHHHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT-TCCSHHHHHHHHHHHHHTTCEEESS
T ss_pred             CcEeeHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccc-ccccHHHHHHHHHHHHhCCcEEEEC
Confidence            3478888777 332    1              778889999999999999998 7899999999999999999999999


Q ss_pred             ceEEEEEecCCe----EEEEEeeccCCCCce-EEEcCEEEEccCCcccCC-ccCccccCcccCCCCCeeeCCCCCCCCCC
Q psy14927        969 TKVTGASKSGDN----ITVTIENVKDPTKKE-ELSCDALLVCVGRRPYTH-NLGLEEIGIEKDEKGRVPVNSRFQTVIPN 1042 (1074)
Q Consensus       969 ~~v~~i~~~~~~----~~v~~~~~~~~g~~~-~i~~D~vi~a~G~~p~~~-~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~ 1042 (1074)
                      +.|+++..++++    +.|++.+      ++ ++++|.||+|+|++|+++ +  ++.+|++++++|+|.||++++|+.|+
T Consensus       276 ~~V~~i~~~~~~~v~~~~v~~~~------G~~~i~aD~Vv~A~G~~p~~~~~--l~~~gl~~~~~G~i~Vd~~~~t~~~~  347 (523)
T 1mo9_A          276 SNVTRIEEDANGRVQAVVAMTPN------GEMRIETDFVFLGLGEQPRSAEL--AKILGLDLGPKGEVLVNEYLQTSVPN  347 (523)
T ss_dssp             CEEEEEEECTTSBEEEEEEEETT------EEEEEECSCEEECCCCEECCHHH--HHHHTCCBCTTSCBCCCTTSBCSSTT
T ss_pred             CEEEEEEEcCCCceEEEEEEECC------CcEEEEcCEEEECcCCccCCccC--HHHcCCccCCCCCEEECCCCccCCCC
Confidence            999999875444    4455433      34 899999999999999998 5  67889999999999999999999999


Q ss_pred             EEEecccCCCCCcHHHHHHHHHHHHHHhhCC
Q psy14927       1043 IFAIGDCIHGPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1043 IyAiGD~~~~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      |||+|||++.|++++.|..||+.||.||+|.
T Consensus       348 IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~  378 (523)
T 1mo9_A          348 VYAVGDLIGGPMEMFKARKSGCYAARNVMGE  378 (523)
T ss_dssp             EEECGGGGCSSCSHHHHHHHHHHHHHHHTTC
T ss_pred             EEEEeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence            9999999998889999999999999999974

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=99.96  E-value=2.9e-28  Score=299.26  Aligned_cols=275  Identities=22%  Similarity=0.306  Sum_probs=207.4

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhc-c-------cccccc-chh----------------------------
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQA-G-------DKGVKL-NLE----------------------------  831 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~-~-------~~g~~~-~~~----------------------------  831 (1074)
                      +.+|+||||||||++||..+++     +++|+. +       ..||.. ...                            
T Consensus       107 ~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~g~~~~  186 (598)
T 2x8g_A          107 DYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFGWSLD  186 (598)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             cccEEEECCCccHHHHHHHHHhCCCeEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhCCcccc
Confidence            4459999999999999999998     678852 2       133321 100                            


Q ss_pred             ---------hhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCC
Q psy14927        832 ---------TMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPG  902 (1074)
Q Consensus       832 ---------~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipg  902 (1074)
                               .+..+.......+...+...+...+|+++.+.++++++..+.+...+|+..++.||+||||||++|. .|.
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~v~v~~~~g~~~~~~~d~lviAtGs~p~-~p~  265 (598)
T 2x8g_A          187 RSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGERPK-YPE  265 (598)
T ss_dssp             GGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCEEEEEEEEEEECCCEEEC-CCS
T ss_pred             CCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEEeCCCCeEEEEeCEEEEeCCCCCC-CCC
Confidence                     0001111111112222334466789999999999999998888777775457999999999999874 334


Q ss_pred             CCCCCcceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEE
Q psy14927        903 IEVDEETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQF  965 (1074)
Q Consensus       903 i~~~~~~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i  965 (1074)
                      +++....++++++++.+..                 |..|.++|.+||++++. .++ +.+++++.+.+.+.|++.||++
T Consensus       266 i~G~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l-~~~d~~~~~~~~~~l~~~gv~i  343 (598)
T 2x8g_A          266 IPGAVEYGITSDDLFSLPYFPGKTLVIGASYVALECAGFLASLGGDVTVMVRS-ILL-RGFDQQMAEKVGDYMENHGVKF  343 (598)
T ss_dssp             STTHHHHCEEHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSS-TTSCHHHHHHHHHHHHHTTCEE
T ss_pred             CCCcccceEcHHHHhhCccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC-cCc-CcCCHHHHHHHHHHHHhCCCEE
Confidence            5544445667777765432                 88889999999999988 666 7899999999999999999999


Q ss_pred             EeCceEEEEEec------C---CeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCC
Q psy14927        966 KLGTKVTGASKS------G---DNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRF 1036 (1074)
Q Consensus       966 ~~~~~v~~i~~~------~---~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~ 1036 (1074)
                      ++++.+.++...      +   +.+.+.+...  +|+..++++|.||+|+|++|+++++.++..|++++++|+|.||+++
T Consensus       344 ~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~--~g~~~~~~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~  421 (598)
T 2x8g_A          344 AKLCVPDEIKQLKVVDTENNKPGLLLVKGHYT--DGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDDE  421 (598)
T ss_dssp             EETEEEEEEEEEECCBTTTTBCCEEEEEEEET--TSCEEEEEESEEEECSCEEECGGGTBCGGGCCCBCTTSCBCCCTTS
T ss_pred             EECCeEEEEEeccccccccCCCceEEEEEEeC--CCcEEeccCCEEEEEeCCccccCccCchhcCceECCCCcEEeCCCC
Confidence            999988888642      1   3344544321  2444456699999999999999986667889999999999999999


Q ss_pred             CCCCCCEEEecccCC-CCCcHHHHHHHHHHHHHHhhCC
Q psy14927       1037 QTVIPNIFAIGDCIH-GPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1037 ~ts~~~IyAiGD~~~-~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      +|++|||||+|||+. .+.++..|..+|+.+|.+|++.
T Consensus       422 ~ts~~~VyA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~  459 (598)
T 2x8g_A          422 QTTVSNVYAIGDINAGKPQLTPVAIQAGRYLARRLFAG  459 (598)
T ss_dssp             BCSSTTEEECGGGBTTSCCCHHHHHHHHHHHHHHHHHC
T ss_pred             cCCCCCEEEEeeecCCCCccHHHHHHhHHHHHHHHhcC
Confidence            999999999999954 4778999999999999999863

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=99.96  E-value=2.1e-29  Score=291.59  Aligned_cols=250  Identities=18%  Similarity=0.260  Sum_probs=203.5

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhcccccc-ccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEE
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGV-KLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKI  866 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~-~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~  866 (1074)
                      +.+||||||||||++||..|..     +++++.+..+. .+.++........ .+++.....+++.+.||+++.| +|+.
T Consensus         9 ~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~~l~~~l~g~~~-~~~l~~~~~~~~~~~~i~~~~~~~V~~   87 (385)
T 3klj_A            9 STKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKS-IDDILIKKNDWYEKNNIKVITSEFATS   87 (385)
T ss_dssp             BCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGGGHHHHHHSCCC-GGGTBSSCHHHHHHTTCEEECSCCEEE
T ss_pred             CCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccChhhHHHcCCCC-HHHccCCCHHHHHHCCCEEEeCCEEEE
Confidence            5569999999999999999965     88888876543 3334443332221 2455556778888899999999 6999


Q ss_pred             ecCCeEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCCCCccee---chhhHhcchH--------------------
Q psy14927        867 TGPNTVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVDEETIV---SSTGALSLKK--------------------  921 (1074)
Q Consensus       867 id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~~~v~---t~~~~~~~~~--------------------  921 (1074)
                      +|++...|++++|  .++.||+||||||++|.  ++||.+    +++   +.++...+..                    
T Consensus        88 id~~~~~v~~~~g--~~~~yd~lvlAtG~~p~~p~i~G~~----~v~~~~~~~d~~~l~~~l~~~~~vvVIGgG~~g~E~  161 (385)
T 3klj_A           88 IDPNNKLVTLKSG--EKIKYEKLIIASGSIANKIKVPHAD----EIFSLYSYDDALKIKDECKNKGKAFIIGGGILGIEL  161 (385)
T ss_dssp             EETTTTEEEETTS--CEEECSEEEECCCEEECCCCCTTCS----CEECCSSHHHHHHHHHHHHHHSCEEEECCSHHHHHH
T ss_pred             EECCCCEEEECCC--CEEECCEEEEecCCCcCCCCCCCCC----CeEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHH
Confidence            9998888989988  68999999999999874  344443    443   4555554432                    


Q ss_pred             hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCE
Q psy14927        922 GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDA 1001 (1074)
Q Consensus       922 A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~ 1001 (1074)
                      |..+++.|.+||++++.++++++.+++.+.+.+.+.+++.||++++++.+.++            .       +++++|.
T Consensus       162 A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i------------g-------~~~~~D~  222 (385)
T 3klj_A          162 AQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEM------------G-------DLIRSSC  222 (385)
T ss_dssp             HHHHHHHTCCEEEECSSSSSCTTTSCHHHHHHHHHHHHTTTCEEECSCCGGGC------------H-------HHHHHSE
T ss_pred             HHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhCCCEEEeCCEEEEc------------C-------eEEecCe
Confidence            78888899999999999999855589999999999999999999999888766            1       3588999


Q ss_pred             EEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCC----CCCcHHHHHHHHHHHHHHhhCC
Q psy14927       1002 LLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIH----GPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1002 vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~----~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      ||+++|++|++++  ++.+|++.+ +| |.||++++|+.|+|||+|||+.    .+..+..|..||+.||.||+|.
T Consensus       223 vv~a~G~~p~~~~--~~~~gl~~~-~g-i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~g~  294 (385)
T 3klj_A          223 VITAVGVKPNLDF--IKDTEIASK-RG-ILVNDHMETSIKDIYACGDVAEFYGKNPGLINIANKQGEVAGLNACGE  294 (385)
T ss_dssp             EEECCCEEECCGG--GTTSCCCBS-SS-EEECTTCBCSSTTEEECGGGEEETTBCCCCHHHHHHHHHHHHHHHTTC
T ss_pred             EEECcCcccChhh--hhhcCCCcC-CC-EEECCCcccCCCCEEEEEeeEecCCCcccHHHHHHHHHHHHHHHhcCC
Confidence            9999999999988  677888876 45 9999999999999999999997    3568999999999999999975

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=99.96  E-value=1.7e-28  Score=291.01  Aligned_cols=266  Identities=18%  Similarity=0.249  Sum_probs=198.1

Q ss_pred             hhhhhccccchHHHHHHHhh-------hhhhhccccccccc-hhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEE
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVKLN-LETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKI  866 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~~~-~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~  866 (1074)
                      +||||||||||++||.+|++       +++|+.+..+.... +.............+.....+.+.+.|++++.+ +|+.
T Consensus         4 ~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~V~~   83 (452)
T 3oc4_A            4 KIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYITEEELRRQKIQLLLNREVVA   83 (452)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC----------------CCCCHHHHHHTTEEEECSCEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhcCCCCCHHHhhcCCHHHHHHCCCEEEECCEEEE
Confidence            49999999999999999998       68888876653221 111111111112344444567778899999887 6888


Q ss_pred             ecCCeEEEEeC-CCCeeEEEcCeEEEccCCCCC--CCCCCCCCCcceechhhHhcc------hH----------------
Q psy14927        867 TGPNTVTVIKS-DGSTEEVKTKNILIATGSEVT--PFPGIEVDEETIVSSTGALSL------KK----------------  921 (1074)
Q Consensus       867 id~~~~~v~~~-~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~~~v~t~~~~~~~------~~----------------  921 (1074)
                      +++....+.+. .++..++.||+||||||++|.  ++||..  ...++++.++...      ..                
T Consensus        84 id~~~~~v~v~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~--~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E  161 (452)
T 3oc4_A           84 MDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQIRGSQ--TEKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGME  161 (452)
T ss_dssp             EETTTTEEEEEETTEEEEEECSEEEECCCCCBCCCCCBTTT--CTTEEEGGGCC----CCHHHHTCSEEEEECCSHHHHH
T ss_pred             EECCCCEEEEEecCceEEEEcCEEEECCCcccCCCCCCCCC--CCCEEEeCCHHHHHHHHHHHhcCCEEEEECCCHHHHH
Confidence            88654444331 222368999999999999984  344442  2445554332111      11                


Q ss_pred             -hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcC
Q psy14927        922 -GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCD 1000 (1074)
Q Consensus       922 -A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D 1000 (1074)
                       |..+.++|.+||++++.+++++..+++++.+.+.+.+++.||++++++.|++++.+++++.|.+.+      + ++++|
T Consensus       162 ~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~------g-~i~aD  234 (452)
T 3oc4_A          162 AIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSE------Q-EISCD  234 (452)
T ss_dssp             HHHHHHHTTCEEEEEESSSSSSTTTCCHHHHHHHHHHHHTTTEEEEETCCEEEEEECSSCEEEEESS------C-EEEES
T ss_pred             HHHHHHhCCCeEEEEEccCccccccCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEccCCeEEEEECC------C-EEEeC
Confidence             788889999999999999998445899999999999999999999999999999655566555432      3 79999


Q ss_pred             EEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCC----------CcHHHHHHHHHHHHHHh
Q psy14927       1001 ALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGP----------MLAHKAEDEGIVCVEGI 1070 (1074)
Q Consensus      1001 ~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~----------~~~~~A~~~G~~aA~~I 1070 (1074)
                      .||+|+|++|+++++  ... ++++++|+|.||++++|+.|||||+|||+..+          +++..|..+|+.||.||
T Consensus       235 ~Vv~A~G~~p~~~~l--~~~-~~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i  311 (452)
T 3oc4_A          235 SGIFALNLHPQLAYL--DKK-IQRNLDQTIAVDAYLQTSVPNVFAIGDCISVMNEPVAETFYAPLVNNAVRTGLVVANNL  311 (452)
T ss_dssp             EEEECSCCBCCCSSC--CTT-SCBCTTSCBCCCTTCBCSSTTEEECGGGBCEEEGGGTEEECCCCHHHHHHHHHHHTTSS
T ss_pred             EEEECcCCCCChHHH--Hhh-hccCCCCCEEECcCccCCCCCEEEEEeeEEeccccCCceeecchHHHHHHHHHHHHHHh
Confidence            999999999999974  333 88899999999999999999999999999753          58999999999999999


Q ss_pred             hCC
Q psy14927       1071 AGD 1073 (1074)
Q Consensus      1071 ~~~ 1073 (1074)
                      ++.
T Consensus       312 ~g~  314 (452)
T 3oc4_A          312 EEK  314 (452)
T ss_dssp             SSC
T ss_pred             cCC
Confidence            975

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=99.96  E-value=2.9e-29  Score=295.40  Aligned_cols=265  Identities=18%  Similarity=0.238  Sum_probs=202.3

Q ss_pred             hhhhhhccccchHHHHHHHhh-------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEe
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKIT  867 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~i  867 (1074)
                      |+|||||||+||+++|..|++       +++++.+.+...+.+..+..+.... +++...+.+.+++.||+|+.++|+.|
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~-~~i~~~~~~~~~~~gv~~i~~~v~~I   81 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKF-EDISVPLAPLLPKFNIEFINEKAESI   81 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCG-GGSEEESTTTGGGGTEEEECSCEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCH-HHhhhcHHHHHHHCCcEEEEeEEEEE
Confidence            349999999999999999987       7888887766666565555443322 55666677888888999999999999


Q ss_pred             cCCeEEEEeCCCCeeEEEcCeEEEccCCCC-CCCCCCCCCCcceechhhHhcchH-------------------------
Q psy14927        868 GPNTVTVIKSDGSTEEVKTKNILIATGSEV-TPFPGIEVDEETIVSSTGALSLKK-------------------------  921 (1074)
Q Consensus       868 d~~~~~v~~~~G~~~~i~~d~lIIATG~~p-~~ipgi~~~~~~v~t~~~~~~~~~-------------------------  921 (1074)
                      |++..+|++++|  .++.||+||||||+++ +++||+......+.+.++...+.+                         
T Consensus        82 d~~~~~V~~~~g--~~i~YD~LViAtG~~~~~~i~G~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~vv~gg~~gve~~~~  159 (430)
T 3hyw_A           82 DPDANTVTTQSG--KKIEYDYLVIATGPKLVFGAEGQEENSTSICTAEHALETQKKLQELYANPGPVVIGAIPGVSCFGP  159 (430)
T ss_dssp             ETTTTEEEETTC--CEEECSEEEECCCCEEECCSBTHHHHSCCCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHH
T ss_pred             ECCCCEEEECCC--CEEECCEEEEeCCCCccCCccCcccCcCCcccHHHHHHHHHHHHhhccCCceEEEeCCCcEEEhHH
Confidence            999999999999  6899999999999975 234554322233445555543332                         


Q ss_pred             --------hhHHhhcC----CcEEEEecCCccC--CCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEee
Q psy14927        922 --------GSVWGRLG----AEVTAIEFMNAIG--GMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIEN  987 (1074)
Q Consensus       922 --------A~~l~~~G----~~Vtlv~~~~~~~--~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~  987 (1074)
                              +..+.+.|    .+|++++..+.+.  .+...+...+.+.+.++++||++++++.|+++++  +.  +.+++
T Consensus       160 ~~e~a~~~~~~l~~~g~~~~v~v~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~GV~~~~~~~v~~v~~--~~--~~~~~  235 (430)
T 3hyw_A          160 AYEFALMLHYELKKRGIRYKVPMTFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIANVAVKAIEP--DK--VIYED  235 (430)
T ss_dssp             HHHHHHHHHHHHHHTTCGGGCCEEEECSSSSTTCTTTTCSTTHHHHHHHHHHHTTCEEECSCEEEEECS--SE--EEEEC
T ss_pred             HHHHHHHHHHHHHHhcccccceeeeecccchhhhccchhhHHHHHHHHHHHHhCCeEEEeCceEEEEeC--Cc--eEEEe
Confidence                    22334444    4789998877653  1345677788899999999999999999999976  44  33444


Q ss_pred             ccCCCCceEEEcCEEEEccCCcccCCccCcccc--CcccCCCCCeeeCCCCC-CCCCCEEEecccCCC------------
Q psy14927        988 VKDPTKKEELSCDALLVCVGRRPYTHNLGLEEI--GIEKDEKGRVPVNSRFQ-TVIPNIFAIGDCIHG------------ 1052 (1074)
Q Consensus       988 ~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~--gl~ld~~G~I~Vd~~~~-ts~~~IyAiGD~~~~------------ 1052 (1074)
                      .  +|+++++++|+++|++|.+|+..   +...  ++..+.+|+|.||+++| |++|||||+|||++.            
T Consensus       236 ~--~g~~~~i~~d~vi~~~G~~~~~~---~~~~~~~l~~~~~g~i~vd~~lq~t~~~~IfAiGD~a~~p~~~~~~~~~~~  310 (430)
T 3hyw_A          236 L--NGNTHEVPAKFTMFMPSFQGPEV---VASAGDKVANPANKMVIVNRCFQNPTYKNIFGVGVVTAIPPIEKTPIPTGV  310 (430)
T ss_dssp             T--TSCEEEEECSEEEEECEEECCHH---HHTTCTTTBCTTTCCBCCCTTSBCSSSTTEEECSTTBCCCCSSCCSSCCCC
T ss_pred             e--CCCceEeecceEEEeccCCCchH---HHhcccccccCCceEEEecccccCCCCCCEEEeccEEecCCcccCcCcCcc
Confidence            2  36678999999999999999854   2333  34456678999999999 899999999999863            


Q ss_pred             CCcHHHHHHHHHHHHHHhh
Q psy14927       1053 PMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1053 ~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                      |++++.|.+||+.+|+||+
T Consensus       311 pk~a~~A~~qg~~~A~Ni~  329 (430)
T 3hyw_A          311 PKTGMMIEQMAMAVAHNIV  329 (430)
T ss_dssp             CCCHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHH
Confidence            4678999999999999997

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=99.96  E-value=2.4e-29  Score=294.36  Aligned_cols=264  Identities=21%  Similarity=0.294  Sum_probs=205.0

Q ss_pred             hhhhhccccchHHHHHHHhh-------hhhhhccccccc-cchhh-hhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEE
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVK-LNLET-MMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGK  865 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~-~~~~~-~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~  865 (1074)
                      +|||||||+||+++|..|++       +++++.+..+.. +.+.. +..+... ...+ ....+.+.+.||+++.+ +|+
T Consensus         4 ~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~~l~~~~~~g~~~-~~~~-~~~~~~~~~~~i~~~~~~~v~   81 (410)
T 3ef6_A            4 HVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLE-RPPI-LAEADWYGEARIDMLTGPEVT   81 (410)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSGGGGTHHHHTSSS-SCCB-SSCTTHHHHTTCEEEESCCEE
T ss_pred             CEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCccccHHHhCCCCC-HHHh-cCCHHHHHHCCCEEEeCCEEE
Confidence            59999999999999999998       667776654332 11111 1111111 1223 33455667789999999 899


Q ss_pred             EecCCeEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCCCCccee-chhhHhcchH--------------------h
Q psy14927        866 ITGPNTVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVDEETIV-SSTGALSLKK--------------------G  922 (1074)
Q Consensus       866 ~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~~~v~-t~~~~~~~~~--------------------A  922 (1074)
                      .+++....|.+.+|  .++.||+||||||++|.  ++||........+ +.++...+..                    |
T Consensus        82 ~id~~~~~v~~~~g--~~~~~d~lvlAtG~~p~~~~ipG~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~E~A  159 (410)
T 3ef6_A           82 ALDVQTRTISLDDG--TTLSADAIVIATGSRARTMALPGSQLPGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVA  159 (410)
T ss_dssp             EEETTTTEEEETTS--CEEECSEEEECCCEEECCCCCTTTTSTTEECCCSHHHHHHHHHHCCTTCEEEEECCSHHHHHHH
T ss_pred             EEECCCCEEEECCC--CEEECCEEEEccCCcccCCCCCCccccceEEeccHHHHHHHHHHhccCCeEEEECCCHHHHHHH
Confidence            99998888888888  68999999999999874  3455432222222 5555544332                    7


Q ss_pred             hHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEE
Q psy14927        923 SVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDAL 1002 (1074)
Q Consensus       923 ~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~v 1002 (1074)
                      ..+.+.|.+||++++.+.++++.+++.+.+.+.+.+++.||++++++.|+++.+++....|++.+      ++++++|.|
T Consensus       160 ~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~d------g~~i~aD~V  233 (410)
T 3ef6_A          160 TTARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMASD------GRSFVADSA  233 (410)
T ss_dssp             HHHHHTTCEEEEECSSSSSSHHHHCHHHHHHHHHHHHHHTCEEECSCCEEEEECSSSCCEEEETT------SCEEECSEE
T ss_pred             HHHHhCCCeEEEEecCCccchhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEeccCcEEEEEECC------CCEEEcCEE
Confidence            78888999999999999988445889999999999999999999999999999865444666654      468999999


Q ss_pred             EEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCC---------cHHHHHHHHHHHHHHhhCC
Q psy14927       1003 LVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPM---------LAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1003 i~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~---------~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      |+|+|.+|++++  ++.+|++++ +| |.||++++|+.|+|||+|||+..+.         .+..|..||+.||.||+|.
T Consensus       234 v~a~G~~p~~~l--~~~~gl~~~-~g-i~vd~~~~t~~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~  309 (410)
T 3ef6_A          234 LICVGAEPADQL--ARQAGLACD-RG-VIVDHCGATLAKGVFAVGDVASWPLRAGGRRSLETYMNAQRQAAAVAAAILGK  309 (410)
T ss_dssp             EECSCEEECCHH--HHHTTCCBS-SS-EECCTTSBCSSTTEEECGGGEEEEBTTSSEECCCCHHHHHHHHHHHHHHHTTC
T ss_pred             EEeeCCeecHHH--HHhCCCccC-Ce-EEEccCeeECCCCEEEEEcceeccCCCCCeeeechHHHHHHHHHHHHHHHcCC
Confidence            999999999987  678889887 45 9999999999999999999987542         4799999999999999985

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=99.96  E-value=3e-28  Score=284.62  Aligned_cols=264  Identities=19%  Similarity=0.289  Sum_probs=206.3

Q ss_pred             hhhhhhccccchHHHHHHHhh-------hhhhhccccccc-cchh-hhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEE
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVK-LNLE-TMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGK  865 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~-~~~~-~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~  865 (1074)
                      ++|||||||++|+++|..|++       +++++.+..+.. +.+. .+..+.. ....+.......+...+|+++..+|+
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~-~~~~~~~~~~~~~~~~~i~~~~~~v~   80 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGG-DPNSLMFRPEKFFQDQAIELISDRMV   80 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGGGGSCC-CTTSSBSSCHHHHHHTTEEEECCCEE
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHHHCCCC-CHHHccCCCHHHHHhCCCEEEEEEEE
Confidence            349999999999999999998       677776644321 1111 1111111 12344445667778899999998899


Q ss_pred             EecCCeEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCCCCccee---chhhHhcchH-------------------
Q psy14927        866 ITGPNTVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVDEETIV---SSTGALSLKK-------------------  921 (1074)
Q Consensus       866 ~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~~~v~---t~~~~~~~~~-------------------  921 (1074)
                      .+++....|++.+|  .++.||+||||||++|.  ++||..  ...++   +.++...+..                   
T Consensus        81 ~id~~~~~v~~~~g--~~~~~d~lvlAtG~~p~~~~i~g~~--~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~e  156 (404)
T 3fg2_P           81 SIDREGRKLLLASG--TAIEYGHLVLATGARNRMLDVPNAS--LPDVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLE  156 (404)
T ss_dssp             EEETTTTEEEESSS--CEEECSEEEECCCEEECCCCSTTTT--STTEECCSSHHHHHHHHHHGGGCSEEEEECCSHHHHH
T ss_pred             EEECCCCEEEECCC--CEEECCEEEEeeCCCccCCCCCCCC--CCcEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHH
Confidence            99988888888888  68999999999999874  344442  23344   3444433221                   


Q ss_pred             -hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeE-EEEEeeccCCCCceEEEc
Q psy14927        922 -GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNI-TVTIENVKDPTKKEELSC  999 (1074)
Q Consensus       922 -A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~-~v~~~~~~~~g~~~~i~~  999 (1074)
                       |..+.+.|.+||++++.+.++++.+++.+.+.+.+.+++.||++++++.|+++..+++.+ .|.+.+      ++++++
T Consensus       157 ~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~V~~~d------G~~i~a  230 (404)
T 3fg2_P          157 FAATARAKGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSD------GNTLPC  230 (404)
T ss_dssp             HHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETT------SCEEEC
T ss_pred             HHHHHHhCCCEEEEEeCCCcchhhccCHHHHHHHHHHHHhCCcEEEECCEEEEEEecCCcEEEEEeCC------CCEEEc
Confidence             777888999999999999998566899999999999999999999999999999865553 466554      458999


Q ss_pred             CEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCC----------cHHHHHHHHHHHHHH
Q psy14927       1000 DALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPM----------LAHKAEDEGIVCVEG 1069 (1074)
Q Consensus      1000 D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~----------~~~~A~~~G~~aA~~ 1069 (1074)
                      |.||+|+|.+|++++  +..+|+.++ +| |.||++++|+.|+|||+|||+..+.          .+..|..||+.||.|
T Consensus       231 D~Vv~a~G~~p~~~l--~~~~gl~~~-~G-i~vd~~~~t~~~~iya~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~aa~~  306 (404)
T 3fg2_P          231 DLVVVGVGVIPNVEI--AAAAGLPTA-AG-IIVDQQLLTSDPHISAIGDCALFESVRFGETMRVESVQNATDQARCVAAR  306 (404)
T ss_dssp             SEEEECCCEEECCHH--HHHTTCCBS-SS-EEECTTSBCSSTTEEECGGGEEEEETTTTEEECCCSHHHHHHHHHHHHHH
T ss_pred             CEEEECcCCccCHHH--HHhCCCCCC-CC-EEECCCcccCCCCEEEeecceeecCccCCceeeehHHHHHHHHHHHHHHH
Confidence            999999999999987  678888887 45 9999999999999999999987532          478999999999999


Q ss_pred             hhCC
Q psy14927       1070 IAGD 1073 (1074)
Q Consensus      1070 I~~~ 1073 (1074)
                      |+|.
T Consensus       307 i~g~  310 (404)
T 3fg2_P          307 LTGD  310 (404)
T ss_dssp             TTTC
T ss_pred             hCCC
Confidence            9985

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.96  E-value=1.1e-28  Score=284.14  Aligned_cols=255  Identities=18%  Similarity=0.231  Sum_probs=198.4

Q ss_pred             hhhhhccccchHHHHHHHhh----hhhhhcccccc-ccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEecC
Q psy14927        796 VVLNTLGNCAAVQANYHLAT----KLFTQAGDKGV-KLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITGP  869 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~----~l~e~~~~~g~-~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id~  869 (1074)
                      +||||||||||++||..|++    +++|+.+..+. ...+........ ..+.+.....+.+.+.||+++.| +|+.+|+
T Consensus        10 ~vvIIGgG~AGl~aA~~l~~~g~V~lie~~~~~~~~~~~l~~~~~g~~-~~~~~~~~~~~~~~~~~v~~~~g~~v~~id~   88 (367)
T 1xhc_A           10 KVVIVGNGPGGFELAKQLSQTYEVTVIDKEPVPYYSKPMLSHYIAGFI-PRNRLFPYSLDWYRKRGIEIRLAEEAKLIDR   88 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTSEEEEECSSSSCCCCSTTHHHHHTTSS-CGGGGCSSCHHHHHHHTEEEECSCCEEEEET
T ss_pred             cEEEECCcHHHHHHHHHHhhcCCEEEEECCCCCccccchhHHHHhCCC-CHHHhccCCHHHHHhCCcEEEECCEEEEEEC
Confidence            49999999999999999987    67887664322 112222221111 12344444566777889999999 5899998


Q ss_pred             CeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCccee---chhhHhcch------H--------------hhHHh
Q psy14927        870 NTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIV---SSTGALSLK------K--------------GSVWG  926 (1074)
Q Consensus       870 ~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~---t~~~~~~~~------~--------------A~~l~  926 (1074)
                      ..+.|+ .+|  .++.||+||||||++|. +|.+++ ...++   +.+++..+.      +              |..|.
T Consensus        89 ~~~~V~-~~g--~~~~~d~lViATGs~p~-~p~i~G-~~~v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~  163 (367)
T 1xhc_A           89 GRKVVI-TEK--GEVPYDTLVLATGARAR-EPQIKG-KEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLA  163 (367)
T ss_dssp             TTTEEE-ESS--CEEECSEEEECCCEEEC-CCCSBT-GGGEECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHH
T ss_pred             CCCEEE-ECC--cEEECCEEEECCCCCCC-CCCCCC-cCCEEEEcCHHHHHHHHHHhhcCCcEEEECCCHHHHHHHHHHH
Confidence            877777 566  57999999999999884 333444 33444   445544331      1              88888


Q ss_pred             hcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEcc
Q psy14927        927 RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCV 1006 (1074)
Q Consensus       927 ~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~ 1006 (1074)
                      +.|.+||++++.++++ + +++++.+.+.+.+++.||+++++++|++++.  +  .+++.+      ++ +++|.||+|+
T Consensus       164 ~~g~~Vtlv~~~~~~l-~-~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~--~--~v~~~~------g~-i~~D~vi~a~  230 (367)
T 1xhc_A          164 EAGYHVKLIHRGAMFL-G-LDEELSNMIKDMLEETGVKFFLNSELLEANE--E--GVLTNS------GF-IEGKVKICAI  230 (367)
T ss_dssp             HTTCEEEEECSSSCCT-T-CCHHHHHHHHHHHHHTTEEEECSCCEEEECS--S--EEEETT------EE-EECSCEEEEC
T ss_pred             hCCCEEEEEeCCCeec-c-CCHHHHHHHHHHHHHCCCEEEcCCEEEEEEe--e--EEEECC------CE-EEcCEEEECc
Confidence            9999999999999998 5 9999999999999999999999999999973  3  355443      34 9999999999


Q ss_pred             CCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCC----CCcHHHHHHHHHHHHHHhhCC
Q psy14927       1007 GRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHG----PMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1007 G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~----~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      |++|++++  ++.+|++++ +| |.||++++|+.|||||+|||+..    ++++..|..||+.||.||++.
T Consensus       231 G~~p~~~l--l~~~gl~~~-~g-i~Vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~g~  297 (367)
T 1xhc_A          231 GIVPNVDL--ARRSGIHTG-RG-ILIDDNFRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADILKGE  297 (367)
T ss_dssp             CEEECCHH--HHHTTCCBS-SS-EECCTTSBCSSTTEEECGGGEEBTTBCCCSHHHHHHHHHHHHHHHTTC
T ss_pred             CCCcCHHH--HHhCCCCCC-CC-EEECCCcccCCCCEEEeEeeeecCCCCccHHHHHHHHHHHHHHHhcCC
Confidence            99999986  678888876 45 99999999999999999999752    468999999999999999975

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=99.96  E-value=4e-28  Score=284.73  Aligned_cols=265  Identities=19%  Similarity=0.282  Sum_probs=207.3

Q ss_pred             chhhhhhccccchHHHHHHHhh-------hhhhhccccccc-cchh-hhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-e
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVK-LNLE-TMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-H  863 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~-~~~~-~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~  863 (1074)
                      +++|||||||++|+++|..|++       +++++.+..+.. +.+. .+..... ....+.......+...||+++.+ +
T Consensus         9 ~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~   87 (415)
T 3lxd_A            9 RADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREK-TFERICIRPAQFWEDKAVEMKLGAE   87 (415)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGGGGTTTTTTSS-CSGGGBSSCHHHHHHTTEEEEETCC
T ss_pred             CCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcccCCHHHHcCCC-CHHHhccCCHHHHHHCCcEEEeCCE
Confidence            4569999999999999999998       677776654332 1111 1111111 12344445567778899999999 8


Q ss_pred             EEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCCCCccee---chhhHhcch-------H----------
Q psy14927        864 GKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVDEETIV---SSTGALSLK-------K----------  921 (1074)
Q Consensus       864 v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~~~v~---t~~~~~~~~-------~----------  921 (1074)
                      |+.+++....|.+.+|  .++.||+||||||++|.  ++||...  ..++   +.++...+.       +          
T Consensus        88 v~~id~~~~~v~~~~g--~~~~~d~lvlAtG~~~~~~~i~g~~~--~~v~~~~~~~d~~~l~~~~~~~~~~vvViGgG~~  163 (415)
T 3lxd_A           88 VVSLDPAAHTVKLGDG--SAIEYGKLIWATGGDPRRLSCVGADL--AGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYI  163 (415)
T ss_dssp             EEEEETTTTEEEETTS--CEEEEEEEEECCCEECCCCBTTSSCC--BTEECCCSHHHHHHHHHHHHTTCCEEEEECCSHH
T ss_pred             EEEEECCCCEEEECCC--CEEEeeEEEEccCCccCCCCCCCccc--cCEEEEcCHHHHHHHHHHhhhcCCeEEEECCCHH
Confidence            9999998888888888  68999999999999874  3455432  3333   444433221       1          


Q ss_pred             ----hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeE-EEEEeeccCCCCceE
Q psy14927        922 ----GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNI-TVTIENVKDPTKKEE  996 (1074)
Q Consensus       922 ----A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~-~v~~~~~~~~g~~~~  996 (1074)
                          |..+.+.|.+||++++.+++++..+++.+.+.+.+.+++.||++++++.|+++..+++.+ .|.+.+      +++
T Consensus       164 g~e~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l~d------G~~  237 (415)
T 3lxd_A          164 GLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQD------GSV  237 (415)
T ss_dssp             HHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEESSSBEEEEEESS------SCE
T ss_pred             HHHHHHHHHhcCCeEEEEecCCchhhhhcCHHHHHHHHHHHHhCCCEEEECCEEEEEEecCCcEEEEEeCC------CCE
Confidence                777888999999999999998556899999999999999999999999999999865553 566654      468


Q ss_pred             EEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCC-----------cHHHHHHHHHH
Q psy14927        997 LSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPM-----------LAHKAEDEGIV 1065 (1074)
Q Consensus       997 i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~-----------~~~~A~~~G~~ 1065 (1074)
                      +++|.||+|+|.+|++++  +..+|+.++ +| |.||++++|+.|+|||+|||+..+.           .+..|..||+.
T Consensus       238 i~aD~Vv~a~G~~p~~~l--~~~~gl~~~-~g-i~vd~~~~t~~~~iyA~GD~a~~~~~~~~g~~~~~~~~~~A~~qg~~  313 (415)
T 3lxd_A          238 IPADIVIVGIGIVPCVGA--LISAGASGG-NG-VDVDEFCRTSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMATA  313 (415)
T ss_dssp             EECSEEEECSCCEESCHH--HHHTTCCCS-SS-EECCTTCBCSSTTEEECGGGEEEECGGGTTCEECCCSHHHHHHHHHH
T ss_pred             EEcCEEEECCCCccChHH--HHhCCCCcC-CC-EEECCCCCcCCCCEEEEEeeeeecCcccCCcceeechHHHHHHHHHH
Confidence            999999999999999987  678888877 45 9999999999999999999987543           36899999999


Q ss_pred             HHHHhhCC
Q psy14927       1066 CVEGIAGD 1073 (1074)
Q Consensus      1066 aA~~I~~~ 1073 (1074)
                      ||.||+|.
T Consensus       314 aa~~i~g~  321 (415)
T 3lxd_A          314 AAKDICGA  321 (415)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHhcCC
Confidence            99999985

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=99.95  E-value=7.5e-28  Score=285.30  Aligned_cols=265  Identities=18%  Similarity=0.251  Sum_probs=196.7

Q ss_pred             hhhhhhccccchHHHHHHHhh-------hhhhhcccccccc-chhhhhhhhhHHHhhhhhhHHHHh-hhCCeEEEee-eE
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVKL-NLETMMGTKSAAVKALTGGIAHLF-KSNKVTQLNG-HG  864 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~~-~~~~~~~~~~~~~~~l~~~~~~~l-~~~gV~~~~g-~v  864 (1074)
                      ++||||||||+|+++|..|++       +++++.+..+... .++....... ....+.....+.+ .+.||+++.+ +|
T Consensus         4 ~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~gi~v~~~~~v   82 (449)
T 3kd9_A            4 KKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEGLS-TPDKLMYYPPEVFIKKRGIDLHLNAEV   82 (449)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC-------------------------CTHHHHTTCEEETTCEE
T ss_pred             CcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCccccCCCC-CHHHhhhcCHHHHHHhcCcEEEecCEE
Confidence            459999999999999999988       6788777554322 1222222221 1233333333444 6789999999 79


Q ss_pred             EEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCCCCccee---chhhHhcch---------H---------
Q psy14927        865 KITGPNTVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVDEETIV---SSTGALSLK---------K---------  921 (1074)
Q Consensus       865 ~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~~~v~---t~~~~~~~~---------~---------  921 (1074)
                      +.++.....+.+.+| ..++.||+||||||++|.  ++||...  ..++   +..+...+.         .         
T Consensus        83 ~~i~~~~~~v~~~~g-~~~~~~d~lviAtG~~p~~p~i~G~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~  159 (449)
T 3kd9_A           83 IEVDTGYVRVRENGG-EKSYEWDYLVFANGASPQVPAIEGVNL--KGVFTADLPPDALAIREYMEKYKVENVVIIGGGYI  159 (449)
T ss_dssp             EEECSSEEEEECSSS-EEEEECSEEEECCCEEECCCSCBTTTS--TTEECSCSTHHHHHHHHHHSSSCCCEEEEECCSHH
T ss_pred             EEEecCCCEEEECCc-eEEEEcCEEEECCCCCCCCCCCCCCCC--CCEEEeCCHHHHHHHHHHHHhcCCCeEEEECCCHH
Confidence            999998888877665 247999999999999873  3445432  2333   233332211         1         


Q ss_pred             ----hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEE
Q psy14927        922 ----GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEEL  997 (1074)
Q Consensus       922 ----A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i  997 (1074)
                          |..+.+.|.+||++++.+++++..+++++.+.+.+.+++. |++++++.+.++..++ .+...+.+      +.++
T Consensus       160 g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~-v~i~~~~~v~~i~~~~-~v~~v~~~------g~~i  231 (449)
T 3kd9_A          160 GIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKLKKH-VNLRLQEITMKIEGEE-RVEKVVTD------AGEY  231 (449)
T ss_dssp             HHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHTTT-SEEEESCCEEEEECSS-SCCEEEET------TEEE
T ss_pred             HHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhC-cEEEeCCeEEEEeccC-cEEEEEeC------CCEE
Confidence                7788899999999999999993349999999999999999 9999999999998754 33222333      3689


Q ss_pred             EcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCC-------C---CCcHHHHHHHHHHHH
Q psy14927        998 SCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIH-------G---PMLAHKAEDEGIVCV 1067 (1074)
Q Consensus       998 ~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~-------~---~~~~~~A~~~G~~aA 1067 (1074)
                      ++|.||+|+|++|++++  ++.+|++++++|+|.||++++|+.|||||+|||+.       .   ++++..|..+|+.+|
T Consensus       232 ~~D~Vv~a~G~~p~~~l--~~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~l~~~A~~~g~~aa  309 (449)
T 3kd9_A          232 KAELVILATGIKPNIEL--AKQLGVRIGETGAIWTNEKMQTSVENVYAAGDVAETRHVITGRRVWVPLAPAGNKMGYVAG  309 (449)
T ss_dssp             ECSEEEECSCEEECCHH--HHHTTCCBCTTSSBCCCTTCBCSSTTEEECSTTBCEEBTTTCSEECCCCHHHHHHHHHHHH
T ss_pred             ECCEEEEeeCCccCHHH--HHhCCccCCCCCCEEECCCCccCCCCEEEeeeeeeeccccCCceEEeccHHHHHHHHHHHH
Confidence            99999999999999987  67889999999999999999999999999999984       1   468999999999999


Q ss_pred             HHhhCC
Q psy14927       1068 EGIAGD 1073 (1074)
Q Consensus      1068 ~~I~~~ 1073 (1074)
                      .||+|.
T Consensus       310 ~~i~g~  315 (449)
T 3kd9_A          310 SNIAGK  315 (449)
T ss_dssp             HHHTTC
T ss_pred             HHhcCC
Confidence            999985

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=99.95  E-value=5.8e-28  Score=288.10  Aligned_cols=269  Identities=19%  Similarity=0.274  Sum_probs=191.7

Q ss_pred             hhhhhhccccchHHHHHHHhh-------hhhhhcccccccc-chhhhhhhhhHHHhhh-------hhhHHHHhhhCCeEE
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVKL-NLETMMGTKSAAVKAL-------TGGIAHLFKSNKVTQ  859 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~~-~~~~~~~~~~~~~~~l-------~~~~~~~l~~~gV~~  859 (1074)
                      ++||||||||+|+++|..|++       +++|+.+..+... .++............+       ......+....|+++
T Consensus         4 ~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~   83 (472)
T 3iwa_A            4 KHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPYNVVRDPEFFRINKDVEA   83 (472)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC-------------------------------------------CEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchhhcCCCCchHHhccccchhccCHHHHhhhcCcEE
Confidence            359999999999999999987       7788877653211 0111111111111222       222333334579999


Q ss_pred             Eee-eEEEecCCeEEEEeC---CCCeeEEEcCeEEEccCCCCC--CCCCCCCCCccee---chhhHhcch--------H-
Q psy14927        860 LNG-HGKITGPNTVTVIKS---DGSTEEVKTKNILIATGSEVT--PFPGIEVDEETIV---SSTGALSLK--------K-  921 (1074)
Q Consensus       860 ~~g-~v~~id~~~~~v~~~---~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~~~v~---t~~~~~~~~--------~-  921 (1074)
                      +.+ +|+.+++....+.+.   +|...++.||+||||||++|.  ++||..  ...++   +..+...+.        + 
T Consensus        84 ~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~--~~~v~~~~~~~~~~~l~~~l~~~~~~~  161 (472)
T 3iwa_A           84 LVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPPVEGMD--LAGVTPVTNLDEAEFVQHAISAGEVSK  161 (472)
T ss_dssp             ECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCSCTTTT--SBTEEECCSHHHHHHHHHHCCTTSCSE
T ss_pred             EECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCCCcCCCCCCCCC--CCCEEEeCCHHHHHHHHHHhhcCCCCE
Confidence            886 688888765555443   364458999999999999873  355543  22332   333333322        1 


Q ss_pred             -------------hhHHhhc-CCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEee
Q psy14927        922 -------------GSVWGRL-GAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIEN  987 (1074)
Q Consensus       922 -------------A~~l~~~-G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~  987 (1074)
                                   |..+.+. |.+||++++.+.+++..+++++.+.+.+.+++.||++++++.|.+++.+++.+.+.+.+
T Consensus       162 vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~  241 (472)
T 3iwa_A          162 AVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEGENGKVARVITD  241 (472)
T ss_dssp             EEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEES
T ss_pred             EEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccccccCHHHHHHHHHHHHhcCCEEEeCCEEEEEEccCCeEEEEEeC
Confidence                         7778888 99999999999998338999999999999999999999999999999866666676654


Q ss_pred             ccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCC-------C---CCcHH
Q psy14927        988 VKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIH-------G---PMLAH 1057 (1074)
Q Consensus       988 ~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~-------~---~~~~~ 1057 (1074)
                            ++++++|.||+|+|++|++++  +..+|++++++|+|.||++++|+.|||||+|||+.       .   +++++
T Consensus       242 ------g~~i~aD~Vv~a~G~~p~~~l--~~~~gl~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~  313 (472)
T 3iwa_A          242 ------KRTLDADLVILAAGVSPNTQL--ARDAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVTIPNLVTGKPGFFPLGS  313 (472)
T ss_dssp             ------SCEEECSEEEECSCEEECCHH--HHHHTCCBCTTCCEECCTTCBCSSTTEEECGGGEEEEBTTTSSEECCCCTT
T ss_pred             ------CCEEEcCEEEECCCCCcCHHH--HHhCCccCCCCCCEEECCCcccCCCCEEEeccceecccccCCceeecchHH
Confidence                  358999999999999999986  57789999999999999999999999999999983       2   35788


Q ss_pred             HHHHHHHHHHHHhhCC
Q psy14927       1058 KAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1058 ~A~~~G~~aA~~I~~~ 1073 (1074)
                      .|..||+++|.||+|.
T Consensus       314 ~A~~~g~~aa~~i~g~  329 (472)
T 3iwa_A          314 MANRQGRVIGTNLADG  329 (472)
T ss_dssp             HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhcCC
Confidence            9999999999999975

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=99.95  E-value=8e-28  Score=293.76  Aligned_cols=267  Identities=21%  Similarity=0.274  Sum_probs=201.5

Q ss_pred             hhhhhccccchHHHHHHHhh-------hhhhhcccccccc-chhhhhhhhh-HHHhhhhhhHHHHhhhCCeEEEee-eEE
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVKL-NLETMMGTKS-AAVKALTGGIAHLFKSNKVTQLNG-HGK  865 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~~-~~~~~~~~~~-~~~~~l~~~~~~~l~~~gV~~~~g-~v~  865 (1074)
                      +||||||||||+++|..|++       +++++.+..+... .++....... .....+......+..+.||+++.+ +|+
T Consensus         3 ~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~   82 (565)
T 3ntd_A            3 KILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVLQTPESFKARFNVEVRVKHEVV   82 (565)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTSSSCCGGGGBCCCHHHHHHHHCCEEETTEEEE
T ss_pred             cEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccccCchHHhcCCcCChHHhhccCHHHHHHhcCcEEEECCEEE
Confidence            49999999999999999988       6888877655321 1111111111 111223333445555689999876 688


Q ss_pred             EecCCeEEEEeC---CCCeeEEEcCeEEEccCCCCC--CCCCCCCCCcceechhh---Hhcch---------H-------
Q psy14927        866 ITGPNTVTVIKS---DGSTEEVKTKNILIATGSEVT--PFPGIEVDEETIVSSTG---ALSLK---------K-------  921 (1074)
Q Consensus       866 ~id~~~~~v~~~---~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~~~v~t~~~---~~~~~---------~-------  921 (1074)
                      .+++....+++.   +|...++.||+||||||++|.  ++||..  ...+++..+   ...+.         .       
T Consensus        83 ~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~ipG~~--~~~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG  160 (565)
T 3ntd_A           83 AIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPPIPGVD--NPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGG  160 (565)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTCC--STTEECCSSHHHHHHHHHHHHHTTCSEEEEECCS
T ss_pred             EEECCCCEEEEEecCCCCeEEEECCEEEECCCCCCCCCCCCCCC--CCCEEEeCCHHHHHHHHHHHhhCCCCEEEEECCC
Confidence            888765444443   364568999999999999874  345542  233443222   11111         1       


Q ss_pred             ------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEe-------------------
Q psy14927        922 ------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASK-------------------  976 (1074)
Q Consensus       922 ------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~-------------------  976 (1074)
                            |..+.+.|.+||++++.+.++ +.+++++...+.+.+++.||++++++.|.++..                   
T Consensus       161 ~~g~e~A~~l~~~g~~Vtlv~~~~~~l-~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~  239 (565)
T 3ntd_A          161 FIGLEMMESLHHLGIKTTLLELADQVM-TPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQH  239 (565)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESSSSSC-TTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCC
T ss_pred             HHHHHHHHHHHhcCCcEEEEEcCCccc-hhcCHHHHHHHHHHHHHCCCEEEeCCeEEEEecccccccccccccccccccc
Confidence                  778889999999999999998 689999999999999999999999999999987                   


Q ss_pred             cCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCC-----
Q psy14927        977 SGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIH----- 1051 (1074)
Q Consensus       977 ~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~----- 1051 (1074)
                      .++.+.+.+.+      ++++++|.||+|+|++|++++  +...|++++++|+|.||++++|+.|||||+|||+.     
T Consensus       240 ~~~~~~v~~~~------g~~i~~D~vi~a~G~~p~~~l--~~~~g~~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~  311 (565)
T 3ntd_A          240 IKGHLSLTLSN------GELLETDLLIMAIGVRPETQL--ARDAGLAIGELGGIKVNAMMQTSDPAIYAVGDAVEEQDFV  311 (565)
T ss_dssp             TTCEEEEEETT------SCEEEESEEEECSCEEECCHH--HHHHTCCBCTTSSBCCCTTCBCSSTTEEECGGGBCEEBTT
T ss_pred             CCCcEEEEEcC------CCEEEcCEEEECcCCccchHH--HHhCCcccCCCCCEEECCCcccCCCCEEEeeeeEeecccc
Confidence            34555565533      358999999999999999986  57789999999999999999999999999999983     


Q ss_pred             --C---CCcHHHHHHHHHHHHHHhhCC
Q psy14927       1052 --G---PMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1052 --~---~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                        .   +++++.|..||+.||.||+|.
T Consensus       312 ~g~~~~~~~~~~A~~~g~~aa~~i~g~  338 (565)
T 3ntd_A          312 TGQACLVPLAGPANRQGRMAADNMFGR  338 (565)
T ss_dssp             TCCEECCCCHHHHHHHHHHHHHHHTTC
T ss_pred             CCceeecccHHHHHHHHHHHHHHhcCC
Confidence              2   357999999999999999985

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=99.95  E-value=1.9e-27  Score=282.15  Aligned_cols=266  Identities=18%  Similarity=0.218  Sum_probs=197.5

Q ss_pred             hhhhhccccchHHHHHHHhh-------hhhhhcccccccc-chhhhhhhhhH--HHhhhhhhHHHHhhhCCeEEEee-eE
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVKL-NLETMMGTKSA--AVKALTGGIAHLFKSNKVTQLNG-HG  864 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~~-~~~~~~~~~~~--~~~~l~~~~~~~l~~~gV~~~~g-~v  864 (1074)
                      +||||||||+|+++|..|++       +++|+.+..+... .+.........  ....+.....+.+.+.||+++.+ .+
T Consensus         2 dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v   81 (452)
T 2cdu_A            2 KVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCGIALYLGKEIKNNDPRGLFYSSPEELSNLGANVQMRHQV   81 (452)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGGGHHHHHTTCBGGGCGGGGBSCCHHHHHHTTCEEEESEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccccchhhhcCCcccCCHHHhhhcCHHHHHHcCCEEEeCCEE
Confidence            48999999999999999987       5777766443221 11111111100  12334444566777889999888 48


Q ss_pred             EEecC--CeEEEEe-CCCCeeEEEcCeEEEccCCCCC--CCCCCCCCCcceech------hhHhcchH------------
Q psy14927        865 KITGP--NTVTVIK-SDGSTEEVKTKNILIATGSEVT--PFPGIEVDEETIVSS------TGALSLKK------------  921 (1074)
Q Consensus       865 ~~id~--~~~~v~~-~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~~~v~t~------~~~~~~~~------------  921 (1074)
                      +.++.  ..+.+.. .+|+..++.||+||||||++|.  ++||..  ...++++      .++.....            
T Consensus        82 ~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~~--~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~  159 (452)
T 2cdu_A           82 TNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPPIPGID--SSRVYLCKNYNDAKKLFEEAPKAKTITIIGSGY  159 (452)
T ss_dssp             EEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTTT--STTEEECSSHHHHHHHHHHGGGCSEEEEECCSH
T ss_pred             EEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCcCCCCCCCCC--CCCEEEeCcHHHHHHHHHHhccCCeEEEECcCH
Confidence            88874  4444433 2233368999999999999874  344442  2334432      22221111            


Q ss_pred             -----hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEE-EEEeeccCCCCce
Q psy14927        922 -----GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNIT-VTIENVKDPTKKE  995 (1074)
Q Consensus       922 -----A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~-v~~~~~~~~g~~~  995 (1074)
                           |..+.+.|.+||++++.+++++..+++++.+.+.+.+++.||++++++.|+++..+++.+. +. .+      +.
T Consensus       160 ~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~~v~-~~------g~  232 (452)
T 2cdu_A          160 IGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKT-LD------GK  232 (452)
T ss_dssp             HHHHHHHHHHTTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEESSCEEEEEEETTEEEEEE-TT------SC
T ss_pred             HHHHHHHHHHhcCCEEEEEEcCCchhhhhhhhhHHHHHHHHHHHCCCEEEcCCeeEEEEcCCCeEEEEE-eC------CC
Confidence                 7888889999999999999984479999999999999999999999999999987545443 32 12      35


Q ss_pred             EEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCC----------CCcHHHHHHHHHH
Q psy14927        996 ELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHG----------PMLAHKAEDEGIV 1065 (1074)
Q Consensus       996 ~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~----------~~~~~~A~~~G~~ 1065 (1074)
                      ++++|.||+|+|++|++++  ++.. ++++++|+|.||++++|+.|||||+|||+..          +++++.|..||+.
T Consensus       233 ~i~~D~vv~a~G~~p~~~l--l~~~-l~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~  309 (452)
T 2cdu_A          233 EIKSDIAILCIGFRPNTEL--LKGK-VAMLDNGAIITDEYMHSSNRDIFAAGDSAAVHYNPTNSNAYIPLATNAVRQGRL  309 (452)
T ss_dssp             EEEESEEEECCCEEECCGG--GTTT-SCBCTTSCBCCCTTSBCSSTTEEECSTTBCEEETTTTEEECCCCHHHHHHHHHH
T ss_pred             EEECCEEEECcCCCCCHHH--HHHh-hhcCCCCCEEECCCcCcCCCCEEEcceEEEeccccCCCeeecchHHHHHHHHHH
Confidence            7999999999999999987  5566 8888899999999999999999999999973          3689999999999


Q ss_pred             HHHHhhCC
Q psy14927       1066 CVEGIAGD 1073 (1074)
Q Consensus      1066 aA~~I~~~ 1073 (1074)
                      +|.||++.
T Consensus       310 aa~~i~g~  317 (452)
T 2cdu_A          310 VGLNLTED  317 (452)
T ss_dssp             HHHTSSSC
T ss_pred             HHHHhCCC
Confidence            99999874

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=99.95  E-value=8.7e-28  Score=280.87  Aligned_cols=258  Identities=18%  Similarity=0.249  Sum_probs=196.8

Q ss_pred             chhhhhhccccchHHHHHHHhh-------hhhhhccccccc-cchh-hhhhhhhHHHhhhhhhHHHHhhhCCeEEEeee-
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVK-LNLE-TMMGTKSAAVKALTGGIAHLFKSNKVTQLNGH-  863 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~-~~~~-~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~-  863 (1074)
                      +.+||||||||+|+++|..|++       +++++.+..+.. +.+. .+.....  .+.+.  +. .+.+.||+++.|+ 
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~-~~~~~~v~~~~~~~   81 (408)
T 2gqw_A            7 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGD--AEKIR--LD-CKRAPEVEWLLGVT   81 (408)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTHHHHHCC--GGGSB--CC-CTTSCSCEEEETCC
T ss_pred             CCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccCCCCCHHHhCCCc--hhhhh--HH-HHHHCCCEEEcCCE
Confidence            4459999999999999999998       567766543321 1111 1111100  11111  11 5567899999995 


Q ss_pred             EEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCC--C-CCCCCCCcce-echhhHhcchH------------------
Q psy14927        864 GKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTP--F-PGIEVDEETI-VSSTGALSLKK------------------  921 (1074)
Q Consensus       864 v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~--i-pgi~~~~~~v-~t~~~~~~~~~------------------  921 (1074)
                      |+.+++...+|++.+|  .++.||+||||||++|..  + ||.. .+.+. .+.+++..+..                  
T Consensus        82 v~~i~~~~~~v~~~~g--~~~~~d~lviAtG~~~~~~~i~~G~~-~~v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~  158 (408)
T 2gqw_A           82 AQSFDPQAHTVALSDG--RTLPYGTLVLATGAAPRALPTLQGAT-MPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGL  158 (408)
T ss_dssp             EEEEETTTTEEEETTS--CEEECSEEEECCCEEECCCGGGTTCS-SCEEECCSHHHHHHHHTTCCTTCEEEEECCSHHHH
T ss_pred             EEEEECCCCEEEECCC--CEEECCEEEECCCCCCCCCCccCCCC-CcEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHH
Confidence            9999987777888887  689999999999998743  3 4443 22211 25555543321                  


Q ss_pred             --hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEc
Q psy14927        922 --GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSC  999 (1074)
Q Consensus       922 --A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~  999 (1074)
                        |..+.+.|.+||++++.+.+++..+++++...+.+.+++.||++++++.|++++ + +  .|++.+      ++++++
T Consensus       159 E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~-~-~--~v~~~~------g~~i~~  228 (408)
T 2gqw_A          159 ELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSV-D-G--VVLLDD------GTRIAA  228 (408)
T ss_dssp             HHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEE-T-T--EEEETT------SCEEEC
T ss_pred             HHHHHHHhCCCEEEEEEeCCcccccccCHHHHHHHHHHHHHcCcEEEeCCEEEEEE-C-C--EEEECC------CCEEEc
Confidence              788889999999999999998445899999999999999999999999999998 3 3  455543      358999


Q ss_pred             CEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCC----------CcHHHHHHHHHHHHHH
Q psy14927       1000 DALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGP----------MLAHKAEDEGIVCVEG 1069 (1074)
Q Consensus      1000 D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~----------~~~~~A~~~G~~aA~~ 1069 (1074)
                      |.||+|+|++|++++  ++..|++++ +| |.||++++|+.|+|||+|||+..+          ..+..|..||+.+|.|
T Consensus       229 D~vi~a~G~~p~~~l--~~~~gl~~~-~g-i~Vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~  304 (408)
T 2gqw_A          229 DMVVVGIGVLANDAL--ARAAGLACD-DG-IFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARH  304 (408)
T ss_dssp             SEEEECSCEEECCHH--HHHHTCCBS-SS-EECCTTCBCSSTTEEECGGGEEEEETTTTEEECCCCHHHHHHHHHHHHHH
T ss_pred             CEEEECcCCCccHHH--HHhCCCCCC-CC-EEECCCCccCCCCEEEEEEEEEecCccCCceeeccHHHHHHHHHHHHHHH
Confidence            999999999999987  677888887 56 999999999999999999999753          2678999999999999


Q ss_pred             hhCC
Q psy14927       1070 IAGD 1073 (1074)
Q Consensus      1070 I~~~ 1073 (1074)
                      |++.
T Consensus       305 i~g~  308 (408)
T 2gqw_A          305 LVDP  308 (408)
T ss_dssp             HHCT
T ss_pred             hcCC
Confidence            9975

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.95  E-value=2.6e-27  Score=267.37  Aligned_cols=265  Identities=19%  Similarity=0.210  Sum_probs=198.5

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhh----hhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeE
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLET----MMGTKSAAVKALTGGIAHLFKSNKVTQLNGHG  864 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~----~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v  864 (1074)
                      +.+|+||||||+|+++|+.|++     +++|+.  .|+.+....    ++.........+...+...+.+.|++++.++|
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v   92 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLLDIV   92 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEESCE
T ss_pred             ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEEEEE
Confidence            3569999999999999999998     788876  555543311    11111112245666677888888999999888


Q ss_pred             EEecCC--eEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCCCC-cceec--hhhHhcch-H--------------h
Q psy14927        865 KITGPN--TVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVDE-ETIVS--STGALSLK-K--------------G  922 (1074)
Q Consensus       865 ~~id~~--~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~-~~v~t--~~~~~~~~-~--------------A  922 (1074)
                      +.++..  .+.+.+.+|  .++.||+||||||+.|.  ++|+..... ..+..  ..+..... +              |
T Consensus        93 ~~i~~~~~~~~v~~~~g--~~~~~d~lvlAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a  170 (323)
T 3f8d_A           93 EKIENRGDEFVVKTKRK--GEFKADSVILGIGVKRRKLGVPGEQEFAGRGISYCSVADAPLFKNRVVAVIGGGDSALEGA  170 (323)
T ss_dssp             EEEEEC--CEEEEESSS--CEEEEEEEEECCCCEECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHH
T ss_pred             EEEEecCCEEEEEECCC--CEEEcCEEEECcCCCCccCCCCchhhhcCCceEEeccCCHhHcCCCEEEEECCCHHHHHHH
Confidence            888754  567777777  58999999999999863  344432211 12211  11111111 1              7


Q ss_pred             hHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEE
Q psy14927        923 SVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDAL 1002 (1074)
Q Consensus       923 ~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~v 1002 (1074)
                      ..+.+.|.+|+++++.+.+. +  ++.   .+.+.+++.||++++++.+.++.++++...|++.+.. +|+..++++|.|
T Consensus       171 ~~l~~~g~~v~~~~~~~~~~-~--~~~---~~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~-~g~~~~~~~D~v  243 (323)
T 3f8d_A          171 EILSSYSTKVYLIHRRDTFK-A--QPI---YVETVKKKPNVEFVLNSVVKEIKGDKVVKQVVVENLK-TGEIKELNVNGV  243 (323)
T ss_dssp             HHHHHHSSEEEEECSSSSCC-S--CHH---HHHHHHTCTTEEEECSEEEEEEEESSSEEEEEEEETT-TCCEEEEECSEE
T ss_pred             HHHHHhCCeEEEEEeCCCCC-c--CHH---HHHHHHhCCCcEEEeCCEEEEEeccCceeEEEEEECC-CCceEEEEcCEE
Confidence            77888899999999998887 3  332   2333444569999999999999987555567776533 355568999999


Q ss_pred             EEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCC---CCcHHHHHHHHHHHHHHhh
Q psy14927       1003 LVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHG---PMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1003 i~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~---~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                      |+++|++|++++  +...|++++++|+|.||++++|+.|||||+|||+..   ++.+..|+.+|..||.+|+
T Consensus       244 v~a~G~~p~~~~--~~~~g~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~  313 (323)
T 3f8d_A          244 FIEIGFDPPTDF--AKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAY  313 (323)
T ss_dssp             EECCCEECCHHH--HHHTTCCBCTTSSBCCCTTCBCSSTTEEECSTTBSTTTTCCCHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCChhH--HhhcCeeecCCCcEecCCCceecCCCEEEcceecCCCCcccceeehhhHHHHHHHHHH
Confidence            999999999887  678899999999999999999999999999999985   7789999999999999986

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=99.95  E-value=1.9e-27  Score=275.94  Aligned_cols=262  Identities=18%  Similarity=0.255  Sum_probs=198.2

Q ss_pred             hhhhhhccccchHHHHHHHhh-------hhhhhccccccccc---hhhhhhhhhHHHhhhhh-hHHHHhhhCCeEEEee-
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVKLN---LETMMGTKSAAVKALTG-GIAHLFKSNKVTQLNG-  862 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~~~---~~~~~~~~~~~~~~l~~-~~~~~l~~~gV~~~~g-  862 (1074)
                      .+||||||||+|+++|..|++       +++++..  |..+.   +........ ....+.. .....+...||+++.+ 
T Consensus         5 ~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~--g~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~   81 (384)
T 2v3a_A            5 APLVIIGTGLAGYNLAREWRKLDGETPLLMITADD--GRSYSKPMLSTGFSKNK-DADGLAMAEPGAMAEQLNARILTHT   81 (384)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC--CCEECGGGGGGTTTTTC-CHHHHEEECHHHHHHHTTCEEECSC
T ss_pred             CcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC--CCccCcccccHHHhCCC-CHHHhhccCHHHHHHhCCcEEEeCC
Confidence            359999999999999999988       4566543  22221   222222211 1234433 3456667889999987 


Q ss_pred             eEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCC-cceechhhHhcch---------H-----------
Q psy14927        863 HGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDE-ETIVSSTGALSLK---------K-----------  921 (1074)
Q Consensus       863 ~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~-~~v~t~~~~~~~~---------~-----------  921 (1074)
                      +|+.+++....|.+.++   ++.||+||||||++|.. |.+++.. ..+++..++....         +           
T Consensus        82 ~v~~i~~~~~~v~~~~~---~~~~d~lviAtG~~p~~-p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~v~ViGgG~~g  157 (384)
T 2v3a_A           82 RVTGIDPGHQRIWIGEE---EVRYRDLVLAWGAEPIR-VPVEGDAQDALYPINDLEDYARFRQAAAGKRRVLLLGAGLIG  157 (384)
T ss_dssp             CCCEEEGGGTEEEETTE---EEECSEEEECCCEEECC-CCCBSTTTTCEEECSSHHHHHHHHHHHTTCCEEEEECCSHHH
T ss_pred             EEEEEECCCCEEEECCc---EEECCEEEEeCCCCcCC-CCCCCcCcCCEEEECCHHHHHHHHHhhccCCeEEEECCCHHH
Confidence            58888875556666543   79999999999998843 3344332 4566554443221         1           


Q ss_pred             ---hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEE
Q psy14927        922 ---GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELS  998 (1074)
Q Consensus       922 ---A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~  998 (1074)
                         |..+.+.|.+||++++.+.+++..+++.+.+.+.+.+++.||++++++.|.++..+++++.+++.+      +++++
T Consensus       158 ~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~------g~~i~  231 (384)
T 2v3a_A          158 CEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSD------GEVIP  231 (384)
T ss_dssp             HHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEEEETTEEEEEETT------SCEEE
T ss_pred             HHHHHHHHhCCCeEEEEecCcchhhcccCHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCEEEEEECC------CCEEE
Confidence               788889999999999999988433589999999999999999999999999999876666666544      46799


Q ss_pred             cCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCC--CC--CcHHHHHHHHHHHHHHhhCC
Q psy14927        999 CDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIH--GP--MLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus       999 ~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~--~~--~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      +|.||+|+|++|++++  ++.+|++++ +| |.||++++|+.|||||+|||+.  ++  +.+..|..||+.+|.||+|.
T Consensus       232 ~d~vv~a~G~~p~~~l--~~~~g~~~~-~g-i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~a~~~g~~~a~~i~g~  306 (384)
T 2v3a_A          232 CDLVVSAVGLRPRTEL--AFAAGLAVN-RG-IVVDRSLRTSHANIYALGDCAEVDGLNLLYVMPLMACARALAQTLAGN  306 (384)
T ss_dssp             ESEEEECSCEEECCHH--HHHTTCCBS-SS-EEECTTCBCSSTTEEECGGGEEETTBCCCSHHHHHHHHHHHHHHHTTC
T ss_pred             CCEEEECcCCCcCHHH--HHHCCCCCC-CC-EEECCCCCCCCCCEEEeeeeeeECCCCcchHHHHHHHHHHHHHHhcCC
Confidence            9999999999999986  678899887 57 9999999999999999999985  22  25778999999999999975

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=99.95  E-value=9.4e-28  Score=282.51  Aligned_cols=266  Identities=19%  Similarity=0.261  Sum_probs=199.2

Q ss_pred             hhhhhhccccchHHHHHHHhh-------hhhhhccccccc-cchhh-hhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eE
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVK-LNLET-MMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HG  864 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~-~~~~~-~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v  864 (1074)
                      ++||||||||+|+++|..|++       +++++.+..+.. +.+.. +..... ....+.....+.+.+.||+++.| .|
T Consensus         5 ~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~gv~~~~~~~v   83 (431)
T 1q1r_A            5 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKA-TAESLYLRTPDAYAAQNIQLLGGTQV   83 (431)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCS-CSGGGBSSCHHHHHHTTEEEECSCCE
T ss_pred             CcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCC-ChHHhcccCHHHHHhCCCEEEeCCEE
Confidence            359999999999999999988       566665543211 11110 111100 11223223456677889999998 58


Q ss_pred             EEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCC--CCCCCCCC---cc-eechhhHhcchH-----------------
Q psy14927        865 KITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTP--FPGIEVDE---ET-IVSSTGALSLKK-----------------  921 (1074)
Q Consensus       865 ~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~--ipgi~~~~---~~-v~t~~~~~~~~~-----------------  921 (1074)
                      +.+++....|++.+|  .++.||+||||||++|..  +||.+..+   .. +.+.+++..+..                 
T Consensus        84 ~~i~~~~~~v~~~~g--~~~~~d~lviAtG~~p~~~~i~G~~~~~~~~v~~~~~~~d~~~l~~~l~~~~~vvViGgG~~g  161 (431)
T 1q1r_A           84 TAINRDRQQVILSDG--RALDYDRLVLATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIG  161 (431)
T ss_dssp             EEEETTTTEEEETTS--CEEECSEEEECCCEEECCCGGGTTHHHHSTTEEESSSHHHHHHHHHTCCTTCEEEEECCSHHH
T ss_pred             EEEECCCCEEEECCC--CEEECCEEEEcCCCCccCCCCCCcccCCCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHHH
Confidence            899876667888887  679999999999998743  34432111   11 125555543321                 


Q ss_pred             ---hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEe--cCCeE-EEEEeeccCCCCce
Q psy14927        922 ---GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASK--SGDNI-TVTIENVKDPTKKE  995 (1074)
Q Consensus       922 ---A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~--~~~~~-~v~~~~~~~~g~~~  995 (1074)
                         |..+.+.|.+||++++.+.+++..+++++.+.+.+.+++.||++++++.|.++..  +++.+ .|.+.+      ++
T Consensus       162 ~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~------G~  235 (431)
T 1q1r_A          162 LEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCED------GT  235 (431)
T ss_dssp             HHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETT------SC
T ss_pred             HHHHHHHHhCCCEEEEEEeCCccccchhhHHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCC------CC
Confidence               7888899999999999999884458999999999999999999999999999987  43443 555543      46


Q ss_pred             EEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCC----------cHHHHHHHHHH
Q psy14927        996 ELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPM----------LAHKAEDEGIV 1065 (1074)
Q Consensus       996 ~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~----------~~~~A~~~G~~ 1065 (1074)
                      ++++|.||+|+|++|++++  ++.+|++++ +| |.||++++|+.|+|||+|||+..+.          .+..|..||+.
T Consensus       236 ~i~~D~Vv~a~G~~p~~~l--~~~~gl~~~-~g-i~Vd~~~~ts~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~  311 (431)
T 1q1r_A          236 RLPADLVIAGIGLIPNCEL--ASAAGLQVD-NG-IVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARK  311 (431)
T ss_dssp             EEECSEEEECCCEEECCHH--HHHTTCCBS-SS-EECCTTSBCSSTTEEECGGGEEEEETTTTEEEECCSHHHHHHHHHH
T ss_pred             EEEcCEEEECCCCCcCcch--hhccCCCCC-CC-EEECCCcccCCCCEEEEEeEEEEccccCCceEeeCHHHHHHHHHHH
Confidence            8999999999999999987  677888886 45 9999999999999999999997532          56889999999


Q ss_pred             HHHHhhCC
Q psy14927       1066 CVEGIAGD 1073 (1074)
Q Consensus      1066 aA~~I~~~ 1073 (1074)
                      +|.||+|.
T Consensus       312 aa~~i~g~  319 (431)
T 1q1r_A          312 IAAILCGK  319 (431)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHhcCC
Confidence            99999975

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=99.95  E-value=6.1e-27  Score=263.45  Aligned_cols=267  Identities=15%  Similarity=0.135  Sum_probs=194.9

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hh-hhhccccccccchhh----hhhhh-hHHHhhhhhhHHHHhhhCCeEEEee
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KL-FTQAGDKGVKLNLET----MMGTK-SAAVKALTGGIAHLFKSNKVTQLNG  862 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l-~e~~~~~g~~~~~~~----~~~~~-~~~~~~l~~~~~~~l~~~gV~~~~g  862 (1074)
                      +++|+||||||+|+++|..|++     ++ +|+ +..|+.+....    ++... .....++..++...+.+.|++++.+
T Consensus         4 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   82 (315)
T 3r9u_A            4 MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEMV   82 (315)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEEECC
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEEEEE
Confidence            4459999999999999999998     67 888 55566543221    11111 0112456667788888899999999


Q ss_pred             eEEEe-cC--CeEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCCCC-cceechhh---HhcchH------------
Q psy14927        863 HGKIT-GP--NTVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVDE-ETIVSSTG---ALSLKK------------  921 (1074)
Q Consensus       863 ~v~~i-d~--~~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~-~~v~t~~~---~~~~~~------------  921 (1074)
                      +|+.+ +.  ..+.+.+..+.  ++.||+||||||+.|.  .+|+..... ..+.+...   .....+            
T Consensus        83 ~v~~i~~~~~~~~~v~~~~~~--~~~~d~lvlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~~~  160 (315)
T 3r9u_A           83 GVEQILKNSDGSFTIKLEGGK--TELAKAVIVCTGSAPKKAGFKGEDEFFGKGVSTCATCDGFFYKNKEVAVLGGGDTAL  160 (315)
T ss_dssp             CEEEEEECTTSCEEEEETTSC--EEEEEEEEECCCEEECCCCCBTTTTTBTTTEESCHHHHGGGGTTSEEEEECCBHHHH
T ss_pred             EEEEEecCCCCcEEEEEecCC--EEEeCEEEEeeCCCCCCCCCCChhhcCCCeEEeeecccccccCcCEEEEECCCHHHH
Confidence            88888 44  45664344443  8999999999999763  344443211 22222221   111111            


Q ss_pred             --hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEE
Q psy14927        922 --GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELS  998 (1074)
Q Consensus       922 --A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~  998 (1074)
                        |..+.+.|.+|+++++.+.+.   .++.   .+.+.+++.||++++++.+.++..+++. ..+.+.. . +|+..+++
T Consensus       161 e~a~~l~~~g~~v~~~~~~~~~~---~~~~---~~~~~~~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~-~-~g~~~~~~  232 (315)
T 3r9u_A          161 EEALYLANICSKIYLIHRRDEFR---AAPS---TVEKVKKNEKIELITSASVDEVYGDKMGVAGVKVKL-K-DGSIRDLN  232 (315)
T ss_dssp             HHHHHHHTTSSEEEEECSSSSCB---SCHH---HHHHHHHCTTEEEECSCEEEEEEEETTEEEEEEEEC-T-TSCEEEEC
T ss_pred             HHHHHHHhhCCEEEEEEeCCCCC---CCHH---HHHHHHhcCCeEEEeCcEEEEEEcCCCcEEEEEEEc-C-CCCeEEee
Confidence              778888999999999988774   2333   3445567899999999999999887644 3455552 1 35556899


Q ss_pred             cCEEEEccCCcccCCccCc-cccC-cccCCCCCeeeCCCCCCCCCCEEEecccCC-CCCcHHHHHHHHHHHHHHhh
Q psy14927        999 CDALLVCVGRRPYTHNLGL-EEIG-IEKDEKGRVPVNSRFQTVIPNIFAIGDCIH-GPMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus       999 ~D~vi~a~G~~p~~~~l~l-~~~g-l~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~-~~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                      +|.||+++|++|++.++.. +.+| ++++++|+|.||++++|++|||||+|||++ .|+.+..|+.+|+.||.+|.
T Consensus       233 ~D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i~vd~~~~t~~~~v~a~GD~~~~~~~~~~~A~~~g~~aa~~i~  308 (315)
T 3r9u_A          233 VPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQTSVAGLFAAGDLRKDAPKQVICAAGDGAVAALSAM  308 (315)
T ss_dssp             CSCEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBCSSTTEEECGGGBTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             cCeEEEEEcCCCCchhhhcccccceeeecCCCcEEeCCCcccCCCCEEEeecccCCchhhhhhHHhhHHHHHHHHH
Confidence            9999999999999998542 3365 899999999999999999999999999986 57789999999999999986

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=99.94  E-value=8.7e-27  Score=275.97  Aligned_cols=266  Identities=20%  Similarity=0.268  Sum_probs=196.6

Q ss_pred             hhhhhccccchHHHHHHHhh-------hhhhhcccccccc-chhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEE
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVKL-NLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKI  866 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~~-~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~  866 (1074)
                      +||||||||+|+++|..|++       +++|+.+..+... .+...........+.+.....+.+.+.||+++.+ .++.
T Consensus         2 dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~   81 (447)
T 1nhp_A            2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEITA   81 (447)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcccccchhhhcCccCCHHHhhcCCHHHHHHCCCEEEECCEEEE
Confidence            48999999999999999987       5777776554221 1111111111112344445566777889999887 5777


Q ss_pred             ecCC--eEEEEe-CCCCeeEEEcCeEEEccCCCCC--CCCCCCCCCcceech---hhHhcc--------hH---------
Q psy14927        867 TGPN--TVTVIK-SDGSTEEVKTKNILIATGSEVT--PFPGIEVDEETIVSS---TGALSL--------KK---------  921 (1074)
Q Consensus       867 id~~--~~~v~~-~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~~~v~t~---~~~~~~--------~~---------  921 (1074)
                      ++..  .+.+.. .+|+..++.||+||||||++|.  ++||..  ...++++   ++...+        ..         
T Consensus        82 i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~--~~~v~~~~~~~~~~~l~~~~~~~~~~~vvIiG~G~  159 (447)
T 1nhp_A           82 IQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDIPGKD--LDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGY  159 (447)
T ss_dssp             EETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCSTTTT--SBSEECCCHHHHHHHHHHHHTCTTCCEEEEECCSH
T ss_pred             EeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCcCCCCCCCCC--CCCeEEECCHHHHHHHHHHhhhcCCCeEEEECCCH
Confidence            7654  444433 3463346999999999999874  344442  2345543   332221        11         


Q ss_pred             -----hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceE
Q psy14927        922 -----GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEE  996 (1074)
Q Consensus       922 -----A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~  996 (1074)
                           |..+++.|.+||++++.+.+++..+++++.+.+.+.+++.||++++++.|.++..++....+.+ +      +.+
T Consensus       160 ~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~v~~v~~-~------~~~  232 (447)
T 1nhp_A          160 IGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVT-D------KNA  232 (447)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECSSBCCEEEE-S------SCE
T ss_pred             HHHHHHHHHHHCCCeEEEEecCcccccccCCHHHHHHHHHHHHhCCCEEEcCCEEEEEEccCcEEEEEE-C------CCE
Confidence                 7788899999999999999883368999999999999999999999999999987532223443 2      247


Q ss_pred             EEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCC----------CCcHHHHHHHHHHH
Q psy14927        997 LSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHG----------PMLAHKAEDEGIVC 1066 (1074)
Q Consensus       997 i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~----------~~~~~~A~~~G~~a 1066 (1074)
                      +++|.||+|+|++|++++  ++.. ++++.+|+|.||++++|+.|+|||+|||+..          ++++..|..||+.+
T Consensus       233 i~~d~vi~a~G~~p~~~~--~~~~-~~~~~~G~i~Vd~~~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~a  309 (447)
T 1nhp_A          233 YDADLVVVAVGVRPNTAW--LKGT-LELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFA  309 (447)
T ss_dssp             EECSEEEECSCEEESCGG--GTTT-SCBCTTSCBCCCTTCBCSSTTEEECGGGSCEEEGGGTEEECCCCHHHHHHHHHHH
T ss_pred             EECCEEEECcCCCCChHH--HHhh-hhhcCCCcEEECccccCCCCCEEEeeeEEEeeccCCCCceechhHHHHHHHHHHH
Confidence            999999999999999987  4556 7888899999999999999999999999962          35799999999999


Q ss_pred             HHHhhCC
Q psy14927       1067 VEGIAGD 1073 (1074)
Q Consensus      1067 A~~I~~~ 1073 (1074)
                      |.||++.
T Consensus       310 a~~i~g~  316 (447)
T 1nhp_A          310 VKNLEEP  316 (447)
T ss_dssp             HHTSSSC
T ss_pred             HHhhcCC
Confidence            9999874

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=99.94  E-value=1.1e-26  Score=263.19  Aligned_cols=265  Identities=18%  Similarity=0.186  Sum_probs=191.8

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchh----hhhhhhh-HHHhhhhhhHHHHhhhCCeEEEeee
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLE----TMMGTKS-AAVKALTGGIAHLFKSNKVTQLNGH  863 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~----~~~~~~~-~~~~~l~~~~~~~l~~~gV~~~~g~  863 (1074)
                      +.+|+||||||+|+++|..|++     +++|+. ..|+.+.+.    ..+.... .....+...+.+.+.+.|++++.++
T Consensus         8 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~   86 (325)
T 2q7v_A            8 DYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVEMDE   86 (325)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEEECC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEEeee
Confidence            4569999999999999999998     788887 455544321    1111100 0113455556777888899999988


Q ss_pred             EEEecCC---e--EEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCCCC-cceech---hhHhcchH-----------
Q psy14927        864 GKITGPN---T--VTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVDE-ETIVSS---TGALSLKK-----------  921 (1074)
Q Consensus       864 v~~id~~---~--~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~-~~v~t~---~~~~~~~~-----------  921 (1074)
                      |+.++..   .  +.|.+.+|  .++.||+||+|||+.|.  ++|+..... ..+.+.   +......+           
T Consensus        87 v~~i~~~~~~~~~~~v~~~~g--~~~~~~~vv~AtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g  164 (325)
T 2q7v_A           87 VQGVQHDATSHPYPFTVRGYN--GEYRAKAVILATGADPRKLGIPGEDNFWGKGVSTCATCDGFFYKGKKVVVIGGGDAA  164 (325)
T ss_dssp             EEEEEECTTSSSCCEEEEESS--CEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHH
T ss_pred             EEEEEeccCCCceEEEEECCC--CEEEeCEEEECcCCCcCCCCCCChhhccCceEEEeccCCHHHcCCCEEEEECCCHHH
Confidence            8887654   2  56666777  58999999999999863  344432111 122221   22211111           


Q ss_pred             ---hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHH-HhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEE
Q psy14927        922 ---GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRIL-GKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEEL  997 (1074)
Q Consensus       922 ---A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l-~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i  997 (1074)
                         |..|.+.|.+||++++.+.+.   .++.+    .+.+ ++.||+++++++++++.+++....|.+.+.. +|+..++
T Consensus       165 ~e~A~~l~~~g~~Vtlv~~~~~~~---~~~~~----~~~l~~~~gv~i~~~~~v~~i~~~~~v~~v~~~~~~-~g~~~~i  236 (325)
T 2q7v_A          165 VEEGMFLTKFADEVTVIHRRDTLR---ANKVA----QARAFANPKMKFIWDTAVEEIQGADSVSGVKLRNLK-TGEVSEL  236 (325)
T ss_dssp             HHHHHHHTTTCSEEEEECSSSSCC---SCHHH----HHHHHTCTTEEEECSEEEEEEEESSSEEEEEEEETT-TCCEEEE
T ss_pred             HHHHHHHHhcCCEEEEEeCCCcCC---cchHH----HHHHHhcCCceEecCCceEEEccCCcEEEEEEEECC-CCcEEEE
Confidence               778888899999999988765   23332    3334 4569999999999999985443456666422 3555689


Q ss_pred             EcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCC-CCcHHHHHHHHHHHHHHhhC
Q psy14927        998 SCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHG-PMLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus       998 ~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~-~~~~~~A~~~G~~aA~~I~~ 1072 (1074)
                      ++|.||+|+|++|++++  +... ++++++|+|.||++++|+.|||||+|||+.. ++++..|..+|+.||.+|++
T Consensus       237 ~~D~vi~a~G~~p~~~~--l~~~-~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~  309 (325)
T 2q7v_A          237 ATDGVFIFIGHVPNTAF--VKDT-VSLRDDGYVDVRDEIYTNIPMLFAAGDVSDYIYRQLATSVGAGTRAAMMTER  309 (325)
T ss_dssp             ECSEEEECSCEEESCGG--GTTT-SCBCTTSCBCCBTTTBCSSTTEEECSTTTCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred             EcCEEEEccCCCCChHH--Hhhh-cccCCCccEecCCCCccCCCCEEEeecccCccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999987  4455 7788899999999999999999999999986 67899999999999999873

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=99.94  E-value=6.1e-27  Score=286.99  Aligned_cols=267  Identities=19%  Similarity=0.254  Sum_probs=203.3

Q ss_pred             chhhhhhccccchHHHHHHHhh-------hhhhhcccccccc-chhhhhhhhh-HHHhhhhhhHHHHhhhCCeEEEee-e
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVKL-NLETMMGTKS-AAVKALTGGIAHLFKSNKVTQLNG-H  863 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~~-~~~~~~~~~~-~~~~~l~~~~~~~l~~~gV~~~~g-~  863 (1074)
                      +++||||||||||++||..|++       +++|+.+..+... .++....... .....+...+..+..+.|++++.+ +
T Consensus        36 ~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~~lp~~~~g~~~~~~~~~~~~~~~~~~~~gi~v~~~~~  115 (588)
T 3ics_A           36 SRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYIGGVITERQKLLVQTVERMSKRFNLDIRVLSE  115 (588)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTTSSCCGGGGBSSCHHHHHHHTTCEEECSEE
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCCCCchhhcCcCCChHHhhccCHHHHHHhcCcEEEECCE
Confidence            4569999999999999999998       6888877654321 1121111111 111223445666677889999887 6


Q ss_pred             EEEecCCeEEEEe---CCCCeeEEEcCeEEEccCCCCC--CCCCCCCCCcceechhhHhcch-----------H------
Q psy14927        864 GKITGPNTVTVIK---SDGSTEEVKTKNILIATGSEVT--PFPGIEVDEETIVSSTGALSLK-----------K------  921 (1074)
Q Consensus       864 v~~id~~~~~v~~---~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~~~v~t~~~~~~~~-----------~------  921 (1074)
                      |+.++.....+.+   .+|...++.||+||||||++|.  ++||+. +...+++..++....           +      
T Consensus       116 V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~-~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViG  194 (588)
T 3ics_A          116 VVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPIVPSIPGIE-EAKALFTLRNVPDTDRIKAYIDEKKPRHATVIG  194 (588)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTTT-TCTTEEECSSHHHHHHHHHHHHHHCCSEEEEEC
T ss_pred             EEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCCCCCCCCCCCcc-cCCCeEEeCCHHHHHHHHHHHhhcCCCeEEEEC
Confidence            8888765444443   3564457999999999999873  344441 123444433222110           1      


Q ss_pred             --------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCC
Q psy14927        922 --------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTK  993 (1074)
Q Consensus       922 --------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~  993 (1074)
                              |..+.+.|.+||++++.+.++ +.+++++.+.+.+.+++.||++++++.|.+++.++++  |.+.+      
T Consensus       195 gG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~--v~~~~------  265 (588)
T 3ics_A          195 GGFIGVEMVENLRERGIEVTLVEMANQVM-PPIDYEMAAYVHEHMKNHDVELVFEDGVDALEENGAV--VRLKS------  265 (588)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSSSSSC-TTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEGGGTE--EEETT------
T ss_pred             CCHHHHHHHHHHHhCCCeEEEEecCCccc-ccCCHHHHHHHHHHHHHcCCEEEECCeEEEEecCCCE--EEECC------
Confidence                    778889999999999999998 6799999999999999999999999999999876543  44443      


Q ss_pred             ceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCC-------C---CCcHHHHHHHH
Q psy14927        994 KEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIH-------G---PMLAHKAEDEG 1063 (1074)
Q Consensus       994 ~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~-------~---~~~~~~A~~~G 1063 (1074)
                      ++++++|.||+|+|++|++++  ++..|++++++|+|.||++++|++|||||+|||+.       .   +++++.|..+|
T Consensus       266 g~~i~~D~Vi~a~G~~p~~~~--l~~~g~~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g  343 (588)
T 3ics_A          266 GSVIQTDMLILAIGVQPESSL--AKGAGLALGVRGTIKVNEKFQTSDPHIYAIGDAIEVKDFVTETETMIPLAWPANRQG  343 (588)
T ss_dssp             SCEEECSEEEECSCEEECCHH--HHHTTCCBCGGGCBCCCTTSBCSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHH
T ss_pred             CCEEEcCEEEEccCCCCChHH--HHhcCceEcCCCCEEECCccccCCCCEEEeeeeeecccccCCcccccccHHHHHHHH
Confidence            358999999999999999987  67889999999999999999999999999999984       2   45899999999


Q ss_pred             HHHHHHhhC
Q psy14927       1064 IVCVEGIAG 1072 (1074)
Q Consensus      1064 ~~aA~~I~~ 1072 (1074)
                      +++|.||+|
T Consensus       344 ~~aa~~i~g  352 (588)
T 3ics_A          344 RMLADIIHG  352 (588)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHhcC
Confidence            999999998

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=99.94  E-value=1.3e-26  Score=276.90  Aligned_cols=267  Identities=19%  Similarity=0.240  Sum_probs=198.4

Q ss_pred             hhhhhhccccchHHHHHHHhh-------hhhhhcccccccc-chhhhhhhhhHHHhhhhhhHHHHh-hhCCeEEEee-eE
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVKL-NLETMMGTKSAAVKALTGGIAHLF-KSNKVTQLNG-HG  864 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~~-~~~~~~~~~~~~~~~l~~~~~~~l-~~~gV~~~~g-~v  864 (1074)
                      .+||||||||+|+++|..|++       +++|+.+..+... .++............+.....+.+ +..||+++.+ .|
T Consensus        37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gv~~~~~~~v  116 (480)
T 3cgb_A           37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLIARNVKTFRDKYGIDAKVRHEV  116 (480)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGGHHHHHTTSSSCGGGGBSSCHHHHHHTTCCEEESSEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCCcchhhcCCcCCHHHhhhcCHHHHHhhcCCEEEeCCEE
Confidence            459999999999999999987       5777766543221 122211111111233433344445 4559999997 67


Q ss_pred             EEecCC--eEEEEe-CCCCeeEEEcCeEEEccCCCCC--CCCCCCCCCccee---chhhHhcch--------H-------
Q psy14927        865 KITGPN--TVTVIK-SDGSTEEVKTKNILIATGSEVT--PFPGIEVDEETIV---SSTGALSLK--------K-------  921 (1074)
Q Consensus       865 ~~id~~--~~~v~~-~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~~~v~---t~~~~~~~~--------~-------  921 (1074)
                      +.++..  .+.+.. .+|+..++.||+||||||++|.  ++||..  ...++   +++++..+.        +       
T Consensus       117 ~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~--~~~v~~~~~~~~~~~l~~~~~~~~~~~vvViGg  194 (480)
T 3cgb_A          117 TKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPEWEGRD--LQGVHLLKTIPDAERILKTLETNKVEDVTIIGG  194 (480)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCBTTT--SBTEECCSSHHHHHHHHHHHHSSCCCEEEEECC
T ss_pred             EEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCcccCCCCCCcc--CCCEEEeCCHHHHHHHHHHhhhcCCCeEEEECC
Confidence            888754  444443 3463347999999999999874  334432  23344   345543221        1       


Q ss_pred             -------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCc
Q psy14927        922 -------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKK  994 (1074)
Q Consensus       922 -------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~  994 (1074)
                             |..+.+.|.+||++++.+.++ +.+++++.+.+.+.+++.||++++++.|+++..+++...+.+ +      +
T Consensus       195 G~~g~e~A~~l~~~g~~Vtlv~~~~~~l-~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~v~~v~~-~------~  266 (480)
T 3cgb_A          195 GAIGLEMAETFVELGKKVRMIERNDHIG-TIYDGDMAEYIYKEADKHHIEILTNENVKAFKGNERVEAVET-D------K  266 (480)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECCGGGTT-SSSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSBEEEEEE-T------T
T ss_pred             CHHHHHHHHHHHhcCCeEEEEEeCCchh-hcCCHHHHHHHHHHHHHcCcEEEcCCEEEEEEcCCcEEEEEE-C------C
Confidence                   778888999999999999988 689999999999999999999999999999987532223332 2      2


Q ss_pred             eEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCC----------CCcHHHHHHHHH
Q psy14927        995 EELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHG----------PMLAHKAEDEGI 1064 (1074)
Q Consensus       995 ~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~----------~~~~~~A~~~G~ 1064 (1074)
                      .++++|.||+|+|++|++++  ++..|++++++|+|.||++++|+.|+|||+|||+..          ++++..|..||+
T Consensus       267 ~~i~~D~vi~a~G~~p~~~~--l~~~g~~~~~~G~I~Vd~~~~ts~p~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~  344 (480)
T 3cgb_A          267 GTYKADLVLVSVGVKPNTDF--LEGTNIRTNHKGAIEVNAYMQTNVQDVYAAGDCATHYHVIKEIHDHIPIGTTANKQGR  344 (480)
T ss_dssp             EEEECSEEEECSCEEESCGG--GTTSCCCBCTTSCBCCCTTSBCSSTTEEECGGGBCEEBTTTCSEECCCCHHHHHHHHH
T ss_pred             CEEEcCEEEECcCCCcChHH--HHhCCcccCCCCCEEECCCccCCCCCEEEeeeEEEecCCCCCcceecchHHHHHHHHH
Confidence            47999999999999999987  678899999999999999999999999999999852          257899999999


Q ss_pred             HHHHHhhCC
Q psy14927       1065 VCVEGIAGD 1073 (1074)
Q Consensus      1065 ~aA~~I~~~ 1073 (1074)
                      .+|.||++.
T Consensus       345 ~aa~~i~g~  353 (480)
T 3cgb_A          345 LAGLNMLDK  353 (480)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHhcCC
Confidence            999999874

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=99.94  E-value=2.1e-26  Score=259.23  Aligned_cols=264  Identities=18%  Similarity=0.259  Sum_probs=182.3

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccccccccc-hh---hhhhhhhHHHhhhhhhHHHHhhhCCeEEEeee-E
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLN-LE---TMMGTKSAAVKALTGGIAHLFKSNKVTQLNGH-G  864 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~-~~---~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~-v  864 (1074)
                      .+|+||||||||++||+++++     +++|+. .+|+... ..   .++........++.........+.++.+..+. +
T Consensus         7 yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~-~~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (312)
T 4gcm_A            7 FDIAIIGAGPAGMTAAVYASRANLKTVMIERG-IPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIK   85 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEEECCCC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCCeeecccccCCcCCccccchHHHHHHHHHHHhhccccccceeee
Confidence            359999999999999999999     678764 3444332 11   11221111113344445566667777777773 3


Q ss_pred             EEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCCCCc-ceec---hhhHhcchH--------------hhH
Q psy14927        865 KITGPNTVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVDEE-TIVS---STGALSLKK--------------GSV  924 (1074)
Q Consensus       865 ~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~~-~v~t---~~~~~~~~~--------------A~~  924 (1074)
                      ...+.....+...++  .+++||+||||||++|.  ++||...... .+.+   .+......+              |..
T Consensus        86 ~~~~~~~~~~~~~~~--~~~~~d~liiAtGs~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~vvViGgG~ig~E~A~~  163 (312)
T 4gcm_A           86 SVEDKGEYKVINFGN--KELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTF  163 (312)
T ss_dssp             EEEECSSCEEEECSS--CEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHH
T ss_pred             eeeeeecceeeccCC--eEEEeceeEEcccCccCcCCCCChhhhCCccEEeeeccCccccCCCEEEEECCCHHHHHHHHH
Confidence            444444444555566  68999999999999874  4555432221 2222   122211111              888


Q ss_pred             HhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEE-EEEeeccCCCCceEEEcCEEE
Q psy14927        925 WGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNIT-VTIENVKDPTKKEELSCDALL 1003 (1074)
Q Consensus       925 l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~-v~~~~~~~~g~~~~i~~D~vi 1003 (1074)
                      |+++|.+||+++++++++ +..     ......++..++.+.....+..+...+.... ....... ++++..+++|.|+
T Consensus       164 l~~~g~~Vtlv~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~v~  236 (312)
T 4gcm_A          164 LTKFADKVTIVHRRDELR-AQR-----ILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTK-DGSEETHEADGVF  236 (312)
T ss_dssp             HTTTCSEEEEECSSSSCC-SCH-----HHHHHHHHCTTEEEECSEEEEEEEEETTEEEEEEEEETT-TCCEEEEECSEEE
T ss_pred             HHhcCCEEEEEecccccC-cch-----hHHHHHHHhcCcceeeecceeeeeccccccccceeeeec-CCceeEEeeeeEE
Confidence            999999999999999887 321     1233567788899988887777766544322 2222222 4567889999999


Q ss_pred             EccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCC-CCcHHHHHHHHHHHHHHhh
Q psy14927       1004 VCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHG-PMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1004 ~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~-~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                      +++|.+|++.+  +...++. +++|+|.||+++|||+|||||+|||++. +++++.|+.+|+.||.||.
T Consensus       237 ~~~g~~~~~~~--~~~~g~~-~~~G~I~vd~~~~Ts~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~i~  302 (312)
T 4gcm_A          237 IYIGMKPLTAP--FKDLGIT-NDVGYIVTKDDMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAA  302 (312)
T ss_dssp             ECSCEEESCGG--GGGGTCB-CTTSCBCCCTTSBCSSTTEEECSTTBSCSCCSHHHHHHHHHHHHHHHH
T ss_pred             eecCCCcCchh--HHhccee-cCCCeEeeCCCCccCCCCEEEEeecCCCcchHHHHHHHHHHHHHHHHH
Confidence            99999999987  5666764 5689999999999999999999999974 5689999999999999986

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.94  E-value=5.4e-27  Score=266.64  Aligned_cols=266  Identities=19%  Similarity=0.208  Sum_probs=195.6

Q ss_pred             cchhhhhhccccchHHHHHHHhh-----hhhhhc----cccccccchhh----hhhhhh-HHHhhhhhhHHHHhhhCCeE
Q psy14927        793 QRQVVLNTLGNCAAVQANYHLAT-----KLFTQA----GDKGVKLNLET----MMGTKS-AAVKALTGGIAHLFKSNKVT  858 (1074)
Q Consensus       793 ~k~~VviiGgG~AGl~aA~~la~-----~l~e~~----~~~g~~~~~~~----~~~~~~-~~~~~l~~~~~~~l~~~gV~  858 (1074)
                      ++++|+||||||+|+++|+.|++     +++|+.    ...|+.+....    ++.... .....+...+...+.+.|++
T Consensus        21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~  100 (338)
T 3itj_A           21 VHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFGTE  100 (338)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHcCCE
Confidence            35679999999999999999999     788884    36666554321    111110 01245666678888889999


Q ss_pred             EEeeeEEEecCC--eEEEEeC---CCCeeEEEcCeEEEccCCCCC--CCCCCCCC-CcceechhhHhcc------hH---
Q psy14927        859 QLNGHGKITGPN--TVTVIKS---DGSTEEVKTKNILIATGSEVT--PFPGIEVD-EETIVSSTGALSL------KK---  921 (1074)
Q Consensus       859 ~~~g~v~~id~~--~~~v~~~---~G~~~~i~~d~lIIATG~~p~--~ipgi~~~-~~~v~t~~~~~~~------~~---  921 (1074)
                      ++.++|+.++..  .+.+.+.   ++  .++.||+||+|||+.|.  .+|+.... ...+.+.......      ..   
T Consensus       101 i~~~~v~~i~~~~~~~~v~~~~~~~~--~~~~~d~vvlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~v  178 (338)
T 3itj_A          101 IITETVSKVDLSSKPFKLWTEFNEDA--EPVTTDAIILATGASAKRMHLPGEETYWQKGISACAVCDGAVPIFRNKPLAV  178 (338)
T ss_dssp             EECSCEEEEECSSSSEEEEETTCSSS--CCEEEEEEEECCCEEECCCCCTTHHHHBTTTEESCHHHHTTSGGGTTSEEEE
T ss_pred             EEEeEEEEEEEcCCEEEEEEEecCCC--cEEEeCEEEECcCCCcCCCCCCCchhccCccEEEchhcccchhhcCCCEEEE
Confidence            999998888754  4555552   44  57999999999999863  34442110 1122222211111      11   


Q ss_pred             ----------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhC-CCEEEeCceEEEEEecCCe-EEEEEeecc
Q psy14927        922 ----------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQ-GMQFKLGTKVTGASKSGDN-ITVTIENVK  989 (1074)
Q Consensus       922 ----------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~-gV~i~~~~~v~~i~~~~~~-~~v~~~~~~  989 (1074)
                                |..|.+.|.+|+++++.+.+. +      ...+.+.+.+. ||++++++.|.++..+++. ..|++.+..
T Consensus       179 vG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~-~------~~~~~~~l~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~~~  251 (338)
T 3itj_A          179 IGGGDSACEEAQFLTKYGSKVFMLVRKDHLR-A------STIMQKRAEKNEKIEILYNTVALEAKGDGKLLNALRIKNTK  251 (338)
T ss_dssp             ECSSHHHHHHHHHHTTTSSEEEEECSSSSCC-S------CHHHHHHHHHCTTEEEECSEEEEEEEESSSSEEEEEEEETT
T ss_pred             ECCCHHHHHHHHHHHhcCCEEEEEEcCCccC-C------CHHHHHHHHhcCCeEEeecceeEEEEcccCcEEEEEEEECC
Confidence                      778888999999999998876 2      23445566554 9999999999999987654 347776633


Q ss_pred             CCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeee-CCCCCCCCCCEEEecccCCC-CCcHHHHHHHHHHHH
Q psy14927        990 DPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPV-NSRFQTVIPNIFAIGDCIHG-PMLAHKAEDEGIVCV 1067 (1074)
Q Consensus       990 ~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~V-d~~~~ts~~~IyAiGD~~~~-~~~~~~A~~~G~~aA 1067 (1074)
                       +|++.++++|.||+|+|++|++.++  .. +++++++|+|.| |++++|+.|||||+|||++. |+.+..|+.+|..||
T Consensus       252 -~g~~~~i~~D~vi~a~G~~p~~~~~--~~-~l~~~~~G~i~v~~~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa  327 (338)
T 3itj_A          252 -KNEETDLPVSGLFYAIGHTPATKIV--AG-QVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQDSKYRQAITSAGSGCMAA  327 (338)
T ss_dssp             -TTEEEEEECSEEEECSCEEECCGGG--BT-TBCBCTTSCBCCCTTSSBCSSTTEEECGGGGCSSCCCHHHHHHHHHHHH
T ss_pred             -CCceEEEEeCEEEEEeCCCCChhHh--hC-ceEecCCCcEEEcCcccccCCCCEEEeeccCCCCccceeeehhhhHHHH
Confidence             4556789999999999999999874  34 899999999985 78899999999999999984 678999999999999


Q ss_pred             HHhh
Q psy14927       1068 EGIA 1071 (1074)
Q Consensus      1068 ~~I~ 1071 (1074)
                      .+|.
T Consensus       328 ~~i~  331 (338)
T 3itj_A          328 LDAE  331 (338)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9986

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=99.94  E-value=2.1e-26  Score=258.85  Aligned_cols=262  Identities=19%  Similarity=0.247  Sum_probs=190.8

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhccccccccch----hhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEE
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNL----ETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGK  865 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~----~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~  865 (1074)
                      +|+||||||+|+++|..|++     +++++  ..|+.+..    ..++.........+...+...+.+.|++++.+ +|+
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~~v~li~~--~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~   80 (310)
T 1fl2_A            3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGE--RFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSAS   80 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECS--STTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeC--CCCceeccccccccccCcCCCCHHHHHHHHHHHHHHcCCeEEccCEEE
Confidence            49999999999999999998     55653  33443321    11111111112345556777788889999999 799


Q ss_pred             EecCC-----eEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCCC-CcceechhhHh----cchH------------
Q psy14927        866 ITGPN-----TVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVD-EETIVSSTGAL----SLKK------------  921 (1074)
Q Consensus       866 ~id~~-----~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~-~~~v~t~~~~~----~~~~------------  921 (1074)
                      .+++.     .+.|.+++|  .++.||+||+|||++|.  ++||.... ...+.+.....    ..+.            
T Consensus        81 ~i~~~~~~~~~~~v~~~~g--~~~~~~~lv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e  158 (310)
T 1fl2_A           81 KLIPAAVEGGLHQIETASG--AVLKARSIIVATGAKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVE  158 (310)
T ss_dssp             EEECCSSTTCCEEEEETTS--CEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHGGGGBTCEEEEECCSHHHHH
T ss_pred             EEEecccCCceEEEEECCC--CEEEeCEEEECcCCCcCCCCCCChhhcccceeEEeccCcHhhcCCCEEEEECCCHHHHH
Confidence            88653     577888887  67999999999999863  34444211 12233322211    1111            


Q ss_pred             -hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHh-CCCEEEeCceEEEEEecCCeE-EEEEeeccCCCCceEEE
Q psy14927        922 -GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGK-QGMQFKLGTKVTGASKSGDNI-TVTIENVKDPTKKEELS  998 (1074)
Q Consensus       922 -A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~-~gV~i~~~~~v~~i~~~~~~~-~v~~~~~~~~g~~~~i~  998 (1074)
                       |..|.+.|.+||++++.+.+.   +++    .+.+.+.+ .||++++++.+.++.++++.+ .+.+.+.. +|+..+++
T Consensus       159 ~A~~l~~~g~~Vtlv~~~~~~~---~~~----~~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~-~g~~~~i~  230 (310)
T 1fl2_A          159 AAIDLAGIVEHVTLLEFAPEMK---ADQ----VLQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRV-SGDIHNIE  230 (310)
T ss_dssp             HHHHHHTTBSEEEEECSSSSCC---SCH----HHHHHHHTCTTEEEESSEEEEEEEESSSSEEEEEEEETT-TCCEEEEE
T ss_pred             HHHHHHHhCCEEEEEEeCcccC---ccH----HHHHHHhhCCCeEEecCCceEEEEcCCCcEEEEEEEECC-CCcEEEEE
Confidence             777888899999999988764   333    34556666 699999999999998765443 56666522 35556899


Q ss_pred             cCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCC-CcHHHHHHHHHHHHHHhhC
Q psy14927        999 CDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGP-MLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus       999 ~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~-~~~~~A~~~G~~aA~~I~~ 1072 (1074)
                      +|.||+|+|++|+++++  .. .++++++|+|.||++++|+.|+|||+|||+..| +.+..|+.+|+.||.+|..
T Consensus       231 ~D~vi~a~G~~p~~~~l--~~-~l~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~  302 (310)
T 1fl2_A          231 LAGIFVQIGLLPNTNWL--EG-AVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFD  302 (310)
T ss_dssp             CSEEEECSCEEESCGGG--TT-TSCBCTTSCBCCCTTCBCSSTTEEECSTTBSCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             cCEEEEeeCCccCchHH--hc-cccccCCCcEEcCCCCccCCCCEEEeecccCCcchhhhhhHhhHHHHHHHHHH
Confidence            99999999999999874  33 378888999999999999999999999999875 5789999999999999863

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.94  E-value=5.8e-27  Score=265.66  Aligned_cols=264  Identities=15%  Similarity=0.127  Sum_probs=198.7

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchh-------hhhhhhhHHHhhhhhhHHHHhhhCCeEEEe
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLE-------TMMGTKSAAVKALTGGIAHLFKSNKVTQLN  861 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~-------~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~  861 (1074)
                      .++|+||||||+|+++|+.|++     +++|+.+..|+.+...       ..+........++...+...+.+.|++++.
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTICL   86 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEEEC
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcEEc
Confidence            3469999999999999999998     7999988887765211       011111111255666778888888999998


Q ss_pred             e-eEEEecCC---eEEEEeCCCCeeEEEcCeEEEccCC---CCC--CCCCCCC-CCcceec-hhhHhcch--H-------
Q psy14927        862 G-HGKITGPN---TVTVIKSDGSTEEVKTKNILIATGS---EVT--PFPGIEV-DEETIVS-STGALSLK--K-------  921 (1074)
Q Consensus       862 g-~v~~id~~---~~~v~~~~G~~~~i~~d~lIIATG~---~p~--~ipgi~~-~~~~v~t-~~~~~~~~--~-------  921 (1074)
                      + +|+.++..   .+.|.+.+|   ++.||+||+|||+   .|.  ++||... ....+.+ ..+.....  .       
T Consensus        87 ~~~v~~i~~~~~~~~~v~~~~g---~~~~d~vVlAtG~~~~~p~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~v~vvG~g  163 (332)
T 3lzw_A           87 EQAVESVEKQADGVFKLVTNEE---THYSKTVIITAGNGAFKPRKLELENAEQYEGKNLHYFVDDLQKFAGRRVAILGGG  163 (332)
T ss_dssp             SCCEEEEEECTTSCEEEEESSE---EEEEEEEEECCTTSCCEECCCCCTTGGGGBTTTEESSCSCGGGGBTCEEEEECSS
T ss_pred             cCEEEEEEECCCCcEEEEECCC---EEEeCEEEECCCCCcCCCCCCCCCChhhccCceEEEecCCHHHcCCCEEEEECCC
Confidence            6 68877653   467888877   4999999999999   553  3444322 1111221 11111111  1       


Q ss_pred             ------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCce
Q psy14927        922 ------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKE  995 (1074)
Q Consensus       922 ------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~  995 (1074)
                            |..+.+.|.+|+++++.+.+.  ..++     ..+.|++.||+++.++.+.++..+++...|++.+.. +|++.
T Consensus       164 ~~~~e~a~~l~~~~~~v~~~~~~~~~~--~~~~-----~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~-~g~~~  235 (332)
T 3lzw_A          164 DSAVDWALMLEPIAKEVSIIHRRDKFR--AHEH-----SVENLHASKVNVLTPFVPAELIGEDKIEQLVLEEVK-GDRKE  235 (332)
T ss_dssp             HHHHHHHHHHTTTBSEEEEECSSSSCS--SCHH-----HHHHHHHSSCEEETTEEEEEEECSSSCCEEEEEETT-SCCEE
T ss_pred             HhHHHHHHHHHhhCCeEEEEEecCcCC--ccHH-----HHHHHhcCCeEEEeCceeeEEecCCceEEEEEEecC-CCceE
Confidence                  777888899999999998875  2222     235578999999999999999987666667777643 46678


Q ss_pred             EEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccC---CCCCcHHHHHHHHHHHHHHhh
Q psy14927        996 ELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCI---HGPMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus       996 ~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~---~~~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                      ++++|.||+++|++|++++  +..+++++ ++|+|.||++++|++|||||+|||+   +.|+++..|+.+|..||.+|+
T Consensus       236 ~~~~D~vv~a~G~~p~~~~--~~~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~  311 (332)
T 3lzw_A          236 ILEIDDLIVNYGFVSSLGP--IKNWGLDI-EKNSIVVKSTMETNIEGFFAAGDICTYEGKVNLIASGFGEAPTAVNNAK  311 (332)
T ss_dssp             EEECSEEEECCCEECCCGG--GGGSSCCE-ETTEEECCTTSBCSSTTEEECGGGEECTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             EEECCEEEEeeccCCCchH--HhhcCccc-cCCeEEeCCCCceecCCEEEccceecCCCCcceEeeehhhHHHHHHHHH
Confidence            8999999999999999987  67888888 6799999999999999999999998   467789999999999999986

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.94  E-value=7.4e-27  Score=262.09  Aligned_cols=257  Identities=12%  Similarity=0.101  Sum_probs=180.8

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhcccccccc--chhhhhhhhhHHHhhhhhhHHHHhhhC-CeEEEeeeEE
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL--NLETMMGTKSAAVKALTGGIAHLFKSN-KVTQLNGHGK  865 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~--~~~~~~~~~~~~~~~l~~~~~~~l~~~-gV~~~~g~v~  865 (1074)
                      +.+|+||||||||++||++++|     +++|+.. .|+.+  .++.++........++.....+++.++ ++.+..++++
T Consensus         6 ~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (304)
T 4fk1_A            6 YIDCAVIGAGPAGLNASLVLGRARKQIALFDNNT-NRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYEKTVV   84 (304)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC-CGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEECCEE
T ss_pred             CcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC-CCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEeeEEE
Confidence            3459999999999999999998     6788754 33332  122222111111233333344444444 6778777666


Q ss_pred             Ee---cCCeEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCC-CCcceechhhHhcc--hH----------------
Q psy14927        866 IT---GPNTVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEV-DEETIVSSTGALSL--KK----------------  921 (1074)
Q Consensus       866 ~i---d~~~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~-~~~~v~t~~~~~~~--~~----------------  921 (1074)
                      .+   +...+++.+.+|  .++.||+||||||++|.  ++||... ....++++......  ..                
T Consensus        85 ~~~~~~~~~~~v~~~~g--~~~~a~~liiATGs~p~~p~i~G~~~~~~~~v~~~~~~~~~~~~~~~~~VIggG~~~~~e~  162 (304)
T 4fk1_A           85 MITKQSTGLFEIVTKDH--TKYLAERVLLATGMQEEFPSIPNVREYYGKSLFSCPYCDGWELKDQPLIIISENEDHTLHM  162 (304)
T ss_dssp             EEEECTTSCEEEEETTC--CEEEEEEEEECCCCEEECCSCTTHHHHBTTTEESCHHHHSGGGTTSCEEEECCSHHHHHHH
T ss_pred             EeeecCCCcEEEEECCC--CEEEeCEEEEccCCccccccccCccccccceeeeccccchhHhcCCceeeecCCCchhhhH
Confidence            54   345678888888  78999999999999873  3444221 11223333222211  11                


Q ss_pred             hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEcC
Q psy14927        922 GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCD 1000 (1074)
Q Consensus       922 A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D 1000 (1074)
                      |..+.+.|.+||++.+++.+.         ..+.+.|++.|++++.++ +..+..+++. ..|++.+      ++++++|
T Consensus       163 a~~~~~~~~~v~i~~~~~~~~---------~~~~~~l~~~g~~~~~~~-v~~~~~~~~~~~~v~~~~------g~~i~~~  226 (304)
T 4fk1_A          163 TKLVYNWSTDLVIATNGNELS---------QTIMDELSNKNIPVITES-IRTLQGEGGYLKKVEFHS------GLRIERA  226 (304)
T ss_dssp             HHHHTTTCSCEEEECSSCCCC---------HHHHHHHHTTTCCEECSC-EEEEESGGGCCCEEEETT------SCEECCC
T ss_pred             HHHHHhCCceEEEEeccccch---------hhhhhhhhccceeEeeee-EEEeecCCCeeeeeeccc------cceeeec
Confidence            667778899999998776543         335577889999999764 7777765443 3455544      5689999


Q ss_pred             EEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCC-CCcHHHHHHHHHHHHHHhh
Q psy14927       1001 ALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHG-PMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1001 ~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~-~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                      .+++++|.+|++.+  +..+|++++++|+|.||+++|||+|||||+|||++. +.++..|+.+|+.||.+|.
T Consensus       227 ~~vi~~g~~~~~~~--~~~~g~~~~~~G~I~vd~~~~Ts~p~IyA~GDv~~~~~~~~~~A~~~G~~AA~~i~  296 (304)
T 4fk1_A          227 GGFIVPTFFRPNQF--IEQLGCELQSNGTFVIDDFGRTSEKNIYLAGETTTQGPSSLIIAASQGNKAAIAIN  296 (304)
T ss_dssp             EEEECCEEECSSCH--HHHTTCCCCTTSSSCSSTTCBCSSTTEEECSHHHHTSCCCHHHHHHHHHHHHHHHH
T ss_pred             ceeeeeccccCChh--hhhcCeEECCCCCEEECcCCccCCCCEEEEeccCCCcchHHHHHHHHHHHHHHHHH
Confidence            99999888887776  678899999999999999999999999999999974 5578999999999999884

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=99.94  E-value=1.8e-26  Score=259.76  Aligned_cols=262  Identities=16%  Similarity=0.176  Sum_probs=186.7

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhcccc----ccccch-------hhhhhhhhHHHhhhhhhHHHHhhhCCeE
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDK----GVKLNL-------ETMMGTKSAAVKALTGGIAHLFKSNKVT  858 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~----g~~~~~-------~~~~~~~~~~~~~l~~~~~~~l~~~gV~  858 (1074)
                      .+|+||||||||++||+++++     +++|+....    ++.+..       +.++...  ...++...+...+.+.+++
T Consensus         5 yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i--~~~~l~~~~~~~~~~~~~~   82 (314)
T 4a5l_A            5 HDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGI--DGNELMMNMRTQSEKYGTT   82 (314)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCE--EHHHHHHHHHHHHHHTTCE
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccC--CHHHHHHHHHHHHhhcCcE
Confidence            359999999999999999998     678875432    222211       1111111  1245556677788889999


Q ss_pred             EEeeeEEEec--CCeEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCCCCc-ceechhhHhcc------hH------
Q psy14927        859 QLNGHGKITG--PNTVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVDEE-TIVSSTGALSL------KK------  921 (1074)
Q Consensus       859 ~~~g~v~~id--~~~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~~-~v~t~~~~~~~------~~------  921 (1074)
                      +..+++....  ...+.+.+.++  .++.||+||||||++|.  ++||...... .+.........      +.      
T Consensus        83 ~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~liiATG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~vvViGg  160 (314)
T 4a5l_A           83 IITETIDHVDFSTQPFKLFTEEG--KEVLTKSVIIATGATAKRMHVPGEDKYWQNGVSACAICDGAVPIFRNKVLMVVGG  160 (314)
T ss_dssp             EECCCEEEEECSSSSEEEEETTC--CEEEEEEEEECCCEEECCCCCTTHHHHBTTTEESCHHHHTTSGGGTTSEEEEECS
T ss_pred             EEEeEEEEeecCCCceEEEECCC--eEEEEeEEEEcccccccccCCCccccccccceeeehhhhhhhhhcCCCeEEEECC
Confidence            9988766554  34566667777  78999999999999874  4555321111 12221111111      11      


Q ss_pred             -------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeeccCCCC
Q psy14927        922 -------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTK  993 (1074)
Q Consensus       922 -------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~  993 (1074)
                             |..|.++|.+||++++.+....   .+   ....+.....++..+....+.++...++. ..+.+.+.. .++
T Consensus       161 G~ig~e~A~~l~~~G~~Vt~v~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~  233 (314)
T 4a5l_A          161 GDAAMEEALHLTKYGSKVIILHRRDAFRA---SK---TMQERVLNHPKIEVIWNSELVELEGDGDLLNGAKIHNLV-SGE  233 (314)
T ss_dssp             SHHHHHHHHHHTTTSSEEEEECSSSSCCS---CH---HHHHHHHTCTTEEEECSEEEEEEEESSSSEEEEEEEETT-TCC
T ss_pred             ChHHHHHHHHHHHhCCeeeeecccccccc---cc---hhhhhhhcccceeeEeeeeeEEEEeeeeccceeEEeecc-ccc
Confidence                   8889999999999998876652   22   22345567778999999989988875433 344444433 466


Q ss_pred             ceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCC-CcHHHHHHHHHHHHHHhh
Q psy14927        994 KEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGP-MLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus       994 ~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~-~~~~~A~~~G~~aA~~I~ 1071 (1074)
                      ++++++|.|++++|++||++++   ..++.++++|+| ||++++||+|||||+|||++.| +++..|+.+|+.||.+|.
T Consensus       234 ~~~i~~d~vi~a~G~~pn~~~l---~~~~~~~~~G~i-v~~~~~Ts~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~~~  308 (314)
T 4a5l_A          234 YKVVPVAGLFYAIGHSPNSKFL---GGQVKTADDGYI-LTEGPKTSVDGVFACGDVCDRVYRQAIVAAGSGCMAALSCE  308 (314)
T ss_dssp             EEEEECSEEEECSCEEESCGGG---TTSSCBCTTSCB-CCBTTBCSSTTEEECSTTTCSSCCCHHHHHHHHHHHHHHHH
T ss_pred             ceeeccccceEecccccChhHh---cccceEcCCeeE-eCCCCccCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHHH
Confidence            7899999999999999999985   345778888877 8889999999999999999876 478999999999999874

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=99.94  E-value=1.2e-27  Score=279.34  Aligned_cols=263  Identities=13%  Similarity=0.180  Sum_probs=196.5

Q ss_pred             hhhhhhccccchHHHHHHHhh-------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEe
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKIT  867 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~i  867 (1074)
                      |+||||||||||+++|.+|++       +++|+.+.+...+.+..+..+.... +.+...+.. +.+.||+|+.++|+.+
T Consensus         3 KkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~-~~~~~~~~~-~~~~gv~~i~~~v~~i   80 (401)
T 3vrd_B            3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDREL-ASLRVGYDG-LRAHGIQVVHDSALGI   80 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCG-GGGEECSHH-HHHTTCEEECSCEEEE
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCH-HHHhhCHHH-HHHCCCEEEEeEEEEE
Confidence            459999999999999999987       7888887766666555554443322 444443433 4467999999999999


Q ss_pred             cCCeEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCCCC----cc-eechhhHhcchH-------------------
Q psy14927        868 GPNTVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVDE----ET-IVSSTGALSLKK-------------------  921 (1074)
Q Consensus       868 d~~~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~----~~-v~t~~~~~~~~~-------------------  921 (1074)
                      |++...+++.+|  .++.||+||||||+++.  .+||+....    .+ ..+.++...+.+                   
T Consensus        81 d~~~~~v~~~~g--~~i~yd~LviAtG~~~~~~~i~G~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~  158 (401)
T 3vrd_B           81 DPDKKLVKTAGG--AEFAYDRCVVAPGIDLLYDKIEGYSEALAAKLPHAWKAGEQTALLRRQLESMDDGGVVIIAPPAPP  158 (401)
T ss_dssp             ETTTTEEEETTS--CEEECSEEEECCCEEECGGGSBTCCSGGGGTSCCCSSCSHHHHHHHHHHHHSCTTCEEEEECCSSS
T ss_pred             EccCcEEEeccc--ceeecceeeeccCCccccCCccCchhhcccCccceeccHHHHHHHHHHHHhcccCCcEEEecCCcc
Confidence            999889999998  78999999999999863  456643211    11 112233222211                   


Q ss_pred             --------------hhHHhhcC--CcEEEEecCCccCC-CCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEE
Q psy14927        922 --------------GSVWGRLG--AEVTAIEFMNAIGG-MGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVT  984 (1074)
Q Consensus       922 --------------A~~l~~~G--~~Vtlv~~~~~~~~-~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~  984 (1074)
                                    +..+++.+  .+|+++++.+.+.. +.+++.+.+.+...+++.||++++++++..++.+++...++
T Consensus       159 i~~~~a~~e~~~~~a~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~v~~v~~~~~~~~v~  238 (401)
T 3vrd_B          159 FRCPPGPYERASQIAHYLKAHKSKSKVIILDNSQTFSKQAQFTKGWERLYGFGTENALIEWHPGPDAAVVKTDTEAMTVE  238 (401)
T ss_dssp             CBCTTHHHHHHHHHHHHHHHHCTTCEEEEECSSSSCTTHHHHHHHHHHHSCTTSTTCSEEEECTTTTCEEEEETTTTEEE
T ss_pred             EEeehHHHHHHHHHHHHHHhcCCCCEEEEEcccccccccccccHHHHHHHHHHHHhcCcEEEeCceEEEEEecccceEEE
Confidence                          34444444  68999998877641 33456666666667789999999999999998876666666


Q ss_pred             EeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCC-CC-CCCCCEEEecccCCC---CCcHHHH
Q psy14927        985 IENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSR-FQ-TVIPNIFAIGDCIHG---PMLAHKA 1059 (1074)
Q Consensus       985 ~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~-~~-ts~~~IyAiGD~~~~---~~~~~~A 1059 (1074)
                      +.+      ++++++|++++++|++|+. +  +..+++ .+++|+|.||++ +| |++|||||+|||++.   |++++.|
T Consensus       239 ~~~------g~~i~~D~vi~~~g~~~~~-~--~~~~gl-~~~~G~i~VD~~tl~~t~~p~VfAiGDva~~~~~pk~a~~A  308 (401)
T 3vrd_B          239 TSF------GETFKAAVINLIPPQRAGK-I--AQSASL-TNDSGWCPVDIRTFESSLQPGIHVIGDACNAAPMPKSAYSA  308 (401)
T ss_dssp             ETT------SCEEECSEEEECCCEEECH-H--HHHTTC-CCTTSSBCBCTTTCBBSSSTTEEECGGGBCCTTSCBSHHHH
T ss_pred             cCC------CcEEEeeEEEEecCcCCch-h--Hhhccc-cccCCCEEECCCcceecCCCCEEEecccccCCCCCchHHHH
Confidence            554      5689999999999999974 3  567787 478899999975 66 799999999999864   5789999


Q ss_pred             HHHHHHHHHHhh
Q psy14927       1060 EDEGIVCVEGIA 1071 (1074)
Q Consensus      1060 ~~~G~~aA~~I~ 1071 (1074)
                      ..||+++|+||+
T Consensus       309 ~~qa~v~A~ni~  320 (401)
T 3vrd_B          309 NSQAKVAAAAVV  320 (401)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999997

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=99.94  E-value=4.8e-26  Score=257.18  Aligned_cols=263  Identities=19%  Similarity=0.229  Sum_probs=190.7

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchh----hhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeE
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLE----TMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHG  864 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~----~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v  864 (1074)
                      +.+|+||||||+|+++|+.|++     +++|+. ..|+.+...    ..+.........+...+.+.+.+.|++++.+++
T Consensus        16 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v   94 (319)
T 3cty_A           16 DFDVVIVGAGAAGFSAAVYAARSGFSVAILDKA-VAGGLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREGVEV   94 (319)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEETCCE
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCC-CCCccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEEeeE
Confidence            3459999999999999999998     788873 444433211    111110001134445566777888999999888


Q ss_pred             EEecC--CeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCC----cceec---hhhHhcchH--------------
Q psy14927        865 KITGP--NTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDE----ETIVS---STGALSLKK--------------  921 (1074)
Q Consensus       865 ~~id~--~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~----~~v~t---~~~~~~~~~--------------  921 (1074)
                      +.++.  +.+.|.+ +|  .++.||+||+|||+.|. .|++++..    ..+..   .+......+              
T Consensus        95 ~~i~~~~~~~~v~~-~~--~~~~~~~li~AtG~~~~-~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~g~e~  170 (319)
T 3cty_A           95 RSIKKTQGGFDIET-ND--DTYHAKYVIITTGTTHK-HLGVKGESEYFGKGTSYCSTCDGYLFKGKRVVTIGGGNSGAIA  170 (319)
T ss_dssp             EEEEEETTEEEEEE-SS--SEEEEEEEEECCCEEEC-CCCCBTTTTTBTTTEESCHHHHGGGGBTSEEEEECCSHHHHHH
T ss_pred             EEEEEeCCEEEEEE-CC--CEEEeCEEEECCCCCcc-cCCCCChHHhCCceEEEEEecchhhcCCCeEEEECCCHHHHHH
Confidence            88763  4456666 44  47999999999999863 23333322    12222   222211111              


Q ss_pred             hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCC-eEEEEEeeccCCCCceEEEcC
Q psy14927        922 GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGD-NITVTIENVKDPTKKEELSCD 1000 (1074)
Q Consensus       922 A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~-~~~v~~~~~~~~g~~~~i~~D 1000 (1074)
                      |..|.+.|.+||++++.+.+.   .++    .+.+.+.+.||++++++.+.++.++++ ...+.+.+.. +|+..++++|
T Consensus       171 a~~l~~~g~~V~~i~~~~~~~---~~~----~l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~-~g~~~~i~~D  242 (319)
T 3cty_A          171 AISMSEYVKNVTIIEYMPKYM---CEN----AYVQEIKKRNIPYIMNAQVTEIVGDGKKVTGVKYKDRT-TGEEKLIETD  242 (319)
T ss_dssp             HHHHTTTBSEEEEECSSSSCC---SCH----HHHHHHHHTTCCEECSEEEEEEEESSSSEEEEEEEETT-TCCEEEECCS
T ss_pred             HHHHHhhCCcEEEEEcCCccC---CCH----HHHHHHhcCCcEEEcCCeEEEEecCCceEEEEEEEEcC-CCceEEEecC
Confidence            777888899999999988765   233    345566789999999999999988654 2356665322 3545689999


Q ss_pred             EEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCC-CCcHHHHHHHHHHHHHHhh
Q psy14927       1001 ALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHG-PMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1001 ~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~-~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                      .||+|+|++|++++  +...|++++++|+|.||++++|+.|||||+|||+.. +.++..|+.+|+.||.+|.
T Consensus       243 ~vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~  312 (319)
T 3cty_A          243 GVFIYVGLIPQTSF--LKDSGVKLDERGYIVVDSRQRTSVPGVYAAGDVTSGNFAQIASAVGDGCKAALSLY  312 (319)
T ss_dssp             EEEECCCEEECCGG--GTTSCCCBCTTSCBCCCTTCBCSSTTEEECSTTBTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEeeCCccChHH--HhhccccccCCccEeCCCCCccCCCCEEEeecccCcchhhHHHHHHHHHHHHHHHH
Confidence            99999999999988  567789999999999999999999999999999987 4789999999999999986

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=99.94  E-value=5.7e-26  Score=255.43  Aligned_cols=263  Identities=16%  Similarity=0.164  Sum_probs=189.1

Q ss_pred             hhhhhccccchHHHHHHHhh------hhhhhccccccccchh----hhhhhh-hHHHhhhhhhHHHHhhhCCeEEEeeeE
Q psy14927        796 VVLNTLGNCAAVQANYHLAT------KLFTQAGDKGVKLNLE----TMMGTK-SAAVKALTGGIAHLFKSNKVTQLNGHG  864 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~------~l~e~~~~~g~~~~~~----~~~~~~-~~~~~~l~~~~~~~l~~~gV~~~~g~v  864 (1074)
                      +|+||||||+|+++|+.|++      +++|+. ..|+.+...    ..+... .-....+...+.+.+.+.|++++.++|
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~v   81 (311)
T 2q0l_A            3 DCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG-MPGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEMTAV   81 (311)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSSEEEECSS-STTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEECSCE
T ss_pred             eEEEECccHHHHHHHHHHHHCCCCcEEEEcCC-CCCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEEEEE
Confidence            49999999999999999987      466663 344433211    111110 001134555567777888999999888


Q ss_pred             EEecC--CeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCC----cceec---hhhHhcchH--------------
Q psy14927        865 KITGP--NTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDE----ETIVS---STGALSLKK--------------  921 (1074)
Q Consensus       865 ~~id~--~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~----~~v~t---~~~~~~~~~--------------  921 (1074)
                      +.++.  +.+.+.+.+|  .++.||+||+|||+.|. +|.+++..    ..+.+   .+......+              
T Consensus        82 ~~i~~~~~~~~v~~~~g--~~~~~~~vv~AtG~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~  158 (311)
T 2q0l_A           82 QRVSKKDSHFVILAEDG--KTFEAKSVIIATGGSPK-RTGIKGESEYWGKGVSTCATCDGFFYKNKEVAVLGGGDTAVEE  158 (311)
T ss_dssp             EEEEEETTEEEEEETTS--CEEEEEEEEECCCEEEC-CCCCBTHHHHBTTTEESCHHHHGGGGTTSEEEEECCSHHHHHH
T ss_pred             EEEEEcCCEEEEEEcCC--CEEECCEEEECCCCCCC-CCCCCChhhccCCcEEEeecCChhhcCCCEEEEECCCHHHHHH
Confidence            87763  4557777777  57999999999999873 23333321    12222   222211111              


Q ss_pred             hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHH-hCCCEEEeCceEEEEEecCCeE-EEEEeeccCCCCceEEEc
Q psy14927        922 GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILG-KQGMQFKLGTKVTGASKSGDNI-TVTIENVKDPTKKEELSC  999 (1074)
Q Consensus       922 A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~-~~gV~i~~~~~v~~i~~~~~~~-~v~~~~~~~~g~~~~i~~  999 (1074)
                      |..|.+.|.+||++++++.+.   .++.    +.+.+. +.||++++++.++++.++++++ .+.+.+.. +|+..++++
T Consensus       159 A~~l~~~g~~Vtlv~~~~~~~---~~~~----~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~-~g~~~~i~~  230 (311)
T 2q0l_A          159 AIYLANICKKVYLIHRRDGFR---CAPI----TLEHAKNNDKIEFLTPYVVEEIKGDASGVSSLSIKNTA-TNEKRELVV  230 (311)
T ss_dssp             HHHHHTTSSEEEEECSSSSCC---SCHH----HHHHHHTCTTEEEETTEEEEEEEEETTEEEEEEEEETT-TCCEEEEEC
T ss_pred             HHHHHhcCCEEEEEeeCCccC---CCHH----HHHHHhhCCCeEEEeCCEEEEEECCCCcEeEEEEEecC-CCceEEEec
Confidence            778888899999999988764   3343    334454 5799999999999998864443 56666322 355568999


Q ss_pred             CEEEEccCCcccCCccCcccc----CcccCCCCCeeeCCCCCCCCCCEEEecccCCC-CCcHHHHHHHHHHHHHHhhC
Q psy14927       1000 DALLVCVGRRPYTHNLGLEEI----GIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHG-PMLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus      1000 D~vi~a~G~~p~~~~l~l~~~----gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~-~~~~~~A~~~G~~aA~~I~~ 1072 (1074)
                      |.||+++|++|+++++  ...    +++++++|+|.||++++|++|||||+|||+.. |+++..|+.+|+.||.||..
T Consensus       231 D~vi~a~G~~p~~~~l--~~~g~~~~l~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~  306 (311)
T 2q0l_A          231 PGFFIFVGYDVNNAVL--KQEDNSMLCKCDEYGSIVVDFSMKTNVQGLFAAGDIRIFAPKQVVCAASDGATAALSVIS  306 (311)
T ss_dssp             SEEEECSCEEECCGGG--BCTTSCBSSCBCTTSCBCCCTTCBCSSTTEEECSTTBTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEecCccChhhh--hcccccceeEeccCCCEEeCCccccCCCCeEEcccccCcchHHHHHHHHhHHHHHHHHHH
Confidence            9999999999999874  455    48888899999999999999999999999986 67899999999999999863

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=99.94  E-value=3.7e-26  Score=269.66  Aligned_cols=266  Identities=18%  Similarity=0.160  Sum_probs=200.8

Q ss_pred             hhhhhhccccchHHHHHHHhh--------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEE
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT--------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKI  866 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~--------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~  866 (1074)
                      ++|||||||++|+++|..|++        +++++.+.....+.+..+..+... .+++...+.+.+.+.||+++.++|+.
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~gv~~~~~~v~~   83 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKE-RDDIAFPIRHYVERKGIHFIAQSAEQ   83 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSC-HHHHEEECHHHHHTTTCEEECSCEEE
T ss_pred             CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccC-HHHHHHHHHHHHHHCCCEEEEeEEEE
Confidence            359999999999999999987        677777765554444444433322 25666667888888999999999999


Q ss_pred             ecCCeEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCCCCc---ceechhhHhcchH--------------------
Q psy14927        867 TGPNTVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVDEE---TIVSSTGALSLKK--------------------  921 (1074)
Q Consensus       867 id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~~---~v~t~~~~~~~~~--------------------  921 (1074)
                      ++++...|++++|  .++.||+||||||++|.  .+||+.....   .+.+.++...+.+                    
T Consensus        84 id~~~~~V~~~~g--~~i~~d~lviAtG~~~~~~~ipG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~vVVGgG~~~  161 (437)
T 3sx6_A           84 IDAEAQNITLADG--NTVHYDYLMIATGPKLAFENVPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGA  161 (437)
T ss_dssp             EETTTTEEEETTS--CEEECSEEEECCCCEECGGGSTTCSTTTSSEECCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTC
T ss_pred             EEcCCCEEEECCC--CEEECCEEEECCCCCcCcccCCCCCcccCcceecccccHHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            9988778888888  67999999999999873  5677643211   2345544432211                    


Q ss_pred             -------------hhHHhhcCCc-----EEEEecCCccCC---CCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe
Q psy14927        922 -------------GSVWGRLGAE-----VTAIEFMNAIGG---MGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN  980 (1074)
Q Consensus       922 -------------A~~l~~~G~~-----Vtlv~~~~~~~~---~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~  980 (1074)
                                   +..+++.|.+     ||++++.+.+..   +.. ++....+.+.|++.||++++++.|++|++  ++
T Consensus       162 g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~~~~~l~~~-~~~~~~~~~~l~~~gI~~~~~~~v~~v~~--~~  238 (437)
T 3sx6_A          162 SCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGV-GDSKGILTKGLKEEGIEAYTNCKVTKVED--NK  238 (437)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSSTTCTTTTCC-TTHHHHHHHHHHHTTCEEECSEEEEEEET--TE
T ss_pred             CcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCccccccccCcc-hHHHHHHHHHHHHCCCEEEcCCEEEEEEC--Ce
Confidence                         2555677764     999999987731   222 34788889999999999999999999986  44


Q ss_pred             EEEEEeeccCCCC---ceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCC-CCCCEEEecccCCC----
Q psy14927        981 ITVTIENVKDPTK---KEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQT-VIPNIFAIGDCIHG---- 1052 (1074)
Q Consensus       981 ~~v~~~~~~~~g~---~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~t-s~~~IyAiGD~~~~---- 1052 (1074)
                      +.++..+.  +|+   +.++++|.+++++|++|+..+  ....|+ .+++|+|.||+++|| ++|||||+|||+..    
T Consensus       239 v~~~~~~~--~g~~~~~~~i~~D~vv~~~g~~~~~~~--~~~~gl-~~~~G~i~Vd~~l~t~~~~~Ifa~GD~~~~~~~~  313 (437)
T 3sx6_A          239 MYVTQVDE--KGETIKEMVLPVKFGMMIPAFKGVPAV--AGVEGL-CNPGGFVLVDEHQRSKKYANIFAAGIAIAIPPVE  313 (437)
T ss_dssp             EEEEEECT--TSCEEEEEEEECSEEEEECCEECCHHH--HTSTTT-BCTTSCBCBCTTSBBSSCTTEEECGGGBCCCCSC
T ss_pred             EEEEeccc--CCccccceEEEEeEEEEcCCCcCchhh--hccccc-cCCCCcEEeChhccCCCCCCEEEEEEEeccCCcC
Confidence            44432221  233   678999999999999987654  233566 688999999999998 99999999999873    


Q ss_pred             --------CCcHHHHHHHHHHHHHHhh
Q psy14927       1053 --------PMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1053 --------~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                              |+++..|..||+.+|+||+
T Consensus       314 ~~~~~~~~pk~~~~A~~qg~~aA~ni~  340 (437)
T 3sx6_A          314 TTPVPTGAPKTGYMIESMVSAAVHNIK  340 (437)
T ss_dssp             CCSSCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCcCCCCCCcHHHHHHHHHHHHHHHHH
Confidence                    5689999999999999997

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.94  E-value=5.7e-26  Score=258.25  Aligned_cols=270  Identities=16%  Similarity=0.162  Sum_probs=197.6

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchh-------hhhhhhhHHHhhhhhhHHHHhhhCCeEEEe
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLE-------TMMGTKSAAVKALTGGIAHLFKSNKVTQLN  861 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~-------~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~  861 (1074)
                      +.+|+||||||+|+++|+.|++     +++|+.+..|+.+...       ..+.........+...+.+.+.+.+++++.
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~   84 (335)
T 2zbw_A            5 HTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPVYSL   84 (335)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCEEEE
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCEEEe
Confidence            3459999999999999999987     7888887776644210       000000001134455566777788999988


Q ss_pred             e-eEEEecC--CeEEEEeCCCCeeEEEcCeEEEccCCC---CC--CCCCCCCCC-cceec-hhhHhcc--hH--------
Q psy14927        862 G-HGKITGP--NTVTVIKSDGSTEEVKTKNILIATGSE---VT--PFPGIEVDE-ETIVS-STGALSL--KK--------  921 (1074)
Q Consensus       862 g-~v~~id~--~~~~v~~~~G~~~~i~~d~lIIATG~~---p~--~ipgi~~~~-~~v~t-~~~~~~~--~~--------  921 (1074)
                      + +|+.++.  +.+.|.+.+|  .++.||+||+|||+.   |.  ++||.+... ..+.. ..+....  ..        
T Consensus        85 ~~~v~~i~~~~~~~~v~~~~g--~~~~~~~lv~AtG~~~~~p~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~  162 (335)
T 2zbw_A           85 GERAETLEREGDLFKVTTSQG--NAYTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYYAVKSKAEFQGKRVLIVGGGD  162 (335)
T ss_dssp             SCCEEEEEEETTEEEEEETTS--CEEEEEEEEECCTTSEEEECCCCCTTTTTTBTTTEESSCSCGGGGTTCEEEEECSSH
T ss_pred             CCEEEEEEECCCEEEEEECCC--CEEEeCEEEECCCCCCCCCCCCCCCChhhccCcEEEEecCchhhcCCCEEEEECCCH
Confidence            7 6777764  3577777777  679999999999994   42  334432111 11221 1111111  11        


Q ss_pred             -----hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceE
Q psy14927        922 -----GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEE  996 (1074)
Q Consensus       922 -----A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~  996 (1074)
                           |..|.+.|.+|+++++++.+. +  .+...+.+.+.+++.||++++++.|.++.++++...|.+.+.. +|+..+
T Consensus       163 ~g~e~a~~l~~~g~~V~~v~~~~~~~-~--~~~~~~~l~~~l~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~~-~g~~~~  238 (335)
T 2zbw_A          163 SAVDWALNLLDTARRITLIHRRPQFR-A--HEASVKELMKAHEEGRLEVLTPYELRRVEGDERVRWAVVFHNQ-TQEELA  238 (335)
T ss_dssp             HHHHHHHHTTTTSSEEEEECSSSSCC-S--CHHHHHHHHHHHHTTSSEEETTEEEEEEEESSSEEEEEEEETT-TCCEEE
T ss_pred             HHHHHHHHHHhhCCEEEEEEcCCccC-c--cHHHHHHHHhccccCCeEEecCCcceeEccCCCeeEEEEEECC-CCceEE
Confidence                 777788899999999998876 2  3667788888899999999999999999985443456666421 244578


Q ss_pred             EEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCC---CCcHHHHHHHHHHHHHHhhC
Q psy14927        997 LSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHG---PMLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus       997 i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~---~~~~~~A~~~G~~aA~~I~~ 1072 (1074)
                      +++|.||+|+|++|++++  +..++++++ +|+|.||++++|+.|||||+|||+..   +.++..|+.+|..+|.+|++
T Consensus       239 i~~D~vi~a~G~~p~~~~--l~~~~~~~~-~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~  314 (335)
T 2zbw_A          239 LEVDAVLILAGYITKLGP--LANWGLALE-KNKIKVDTTMATSIPGVYACGDIVTYPGKLPLIVLGFGEAAIAANHAAA  314 (335)
T ss_dssp             EECSEEEECCCEEEECGG--GGGSCCCEE-TTEEECCTTCBCSSTTEEECSTTEECTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             EecCEEEEeecCCCCchH--hhhcceecc-CCeeeeCCCCCCCCCCEEEeccccccCcchhhhhhhHHHHHHHHHHHHH
Confidence            999999999999999987  577888887 78999999999999999999999863   56899999999999999873

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=99.94  E-value=2.6e-26  Score=255.97  Aligned_cols=253  Identities=15%  Similarity=0.170  Sum_probs=187.5

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhccccccccch-hhhhhhhhHHHhhhhhhHHHHhhhC-CeEEEeeeEEEec
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNL-ETMMGTKSAAVKALTGGIAHLFKSN-KVTQLNGHGKITG  868 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~-~~~~~~~~~~~~~l~~~~~~~l~~~-gV~~~~g~v~~id  868 (1074)
                      +|+||||||+|+++|..|++     +++|+.+..+..... ..++.........+...+.+.+.+. +++++.++|+.++
T Consensus         4 ~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~   83 (297)
T 3fbs_A            4 DVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVEGRVTDAK   83 (297)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEESCEEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEEeEEEEEE
Confidence            49999999999999999998     788875533322211 1112211112245566677777776 8999989988887


Q ss_pred             CC--eEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCCC-Ccceechhh--HhcchH---------------hhHHh
Q psy14927        869 PN--TVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVD-EETIVSSTG--ALSLKK---------------GSVWG  926 (1074)
Q Consensus       869 ~~--~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~-~~~v~t~~~--~~~~~~---------------A~~l~  926 (1074)
                      ..  .+.|.+.+|  .++.||+||||||+.|.  .+|++... ...++++..  ......               |..|.
T Consensus        84 ~~~~~~~v~~~~g--~~~~~d~vviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~  161 (297)
T 3fbs_A           84 GSFGEFIVEIDGG--RRETAGRLILAMGVTDELPEIAGLRERWGSAVFHCPYCHGYELDQGKIGVIAASPMAIHHALMLP  161 (297)
T ss_dssp             EETTEEEEEETTS--CEEEEEEEEECCCCEEECCCCBTTGGGBTTTEESCHHHHTGGGTTCEEEEECCSTTHHHHHHHGG
T ss_pred             EcCCeEEEEECCC--CEEEcCEEEECCCCCCCCCCCCCchhhcCCeeEEcccCcchhhcCCEEEEEecCccHHHHHHHhh
Confidence            53  578888888  67999999999999873  34554321 122332221  111111               77788


Q ss_pred             hcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEcc
Q psy14927        927 RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCV 1006 (1074)
Q Consensus       927 ~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~ 1006 (1074)
                      +.| +|+++++++..    +.    ..+.+.|++.||+++. +.|.++.+++   .|.+.+      ++++++|.||+++
T Consensus       162 ~~g-~v~~v~~~~~~----~~----~~~~~~l~~~gv~i~~-~~v~~i~~~~---~v~~~~------g~~~~~D~vi~a~  222 (297)
T 3fbs_A          162 DWG-ETTFFTNGIVE----PD----ADQHALLAARGVRVET-TRIREIAGHA---DVVLAD------GRSIALAGLFTQP  222 (297)
T ss_dssp             GTS-EEEEECTTTCC----CC----HHHHHHHHHTTCEEEC-SCEEEEETTE---EEEETT------SCEEEESEEEECC
T ss_pred             hcC-cEEEEECCCCC----CC----HHHHHHHHHCCcEEEc-ceeeeeecCC---eEEeCC------CCEEEEEEEEEcc
Confidence            888 99999887652    22    3456788999999995 8899998743   455554      4589999999999


Q ss_pred             CCcccCCccCccccCcccC--CCC-CeeeCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHhh
Q psy14927       1007 GRRPYTHNLGLEEIGIEKD--EKG-RVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1007 G~~p~~~~l~l~~~gl~ld--~~G-~I~Vd~~~~ts~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                      |++|++++  +..++++++  +.| +|.||++++|++|||||+|||++.|+++..|+.+|+.||.+|.
T Consensus       223 G~~p~~~~--~~~~g~~~~~~~~G~~i~vd~~~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~  288 (297)
T 3fbs_A          223 KLRITVDW--IEKLGCAVEEGPMGSTIVTDPMKQTTARGIFACGDVARPAGSVALAVGDGAMAGAAAH  288 (297)
T ss_dssp             EEECCCSC--HHHHTCCEEEETTEEEECCCTTCBCSSTTEEECSGGGCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CcccCchh--HHhcCCccccCCCCceEEeCCCCccCCCCEEEEeecCCchHHHHHHHHhHHHHHHHHH
Confidence            99999987  677888877  457 8999999999999999999999988899999999999999986

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=99.94  E-value=6.5e-26  Score=255.99  Aligned_cols=265  Identities=19%  Similarity=0.229  Sum_probs=193.9

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhh----hhhhhh-HHHhhhhhhHHHHhhhCCeEEEeee
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLET----MMGTKS-AAVKALTGGIAHLFKSNKVTQLNGH  863 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~----~~~~~~-~~~~~l~~~~~~~l~~~gV~~~~g~  863 (1074)
                      +.+|+||||||+|+++|+.|++     +++|+. ..|+.+.+..    .+.... -....+...+...+...|++++.++
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (320)
T 1trb_A            5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDH   83 (320)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS-STTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECCC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEccC-CCCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEee
Confidence            3459999999999999999998     677753 4444432211    111100 0113445556677788899999999


Q ss_pred             EEEecC--CeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCC----ccee---chhhHhcchH-------------
Q psy14927        864 GKITGP--NTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDE----ETIV---SSTGALSLKK-------------  921 (1074)
Q Consensus       864 v~~id~--~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~----~~v~---t~~~~~~~~~-------------  921 (1074)
                      ++.++.  +.+.+ +.+|  .++.||+||+|||+.|. +|.+++..    ..+.   +.+......+             
T Consensus        84 v~~i~~~~~~~~v-~~~~--~~~~~~~lv~AtG~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e  159 (320)
T 1trb_A           84 INKVDLQNRPFRL-NGDN--GEYTCDALIIATGASAR-YLGLPSEEAFKGRGVSACATSDGFFYRNQKVAVIGGGNTAVE  159 (320)
T ss_dssp             EEEEECSSSSEEE-EESS--CEEEEEEEEECCCEEEC-CCCCHHHHHTBTTTEESCHHHHGGGGTTSEEEEECSSHHHHH
T ss_pred             eeEEEecCCEEEE-EeCC--CEEEcCEEEECCCCCcC-CCCCCChHHhCCceeEecccCCccccCCCeEEEECCCHHHHH
Confidence            888875  34555 5556  57999999999999863 23333211    1222   2222211111             


Q ss_pred             -hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeeccCC-CCceEEE
Q psy14927        922 -GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDP-TKKEELS  998 (1074)
Q Consensus       922 -A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~-g~~~~i~  998 (1074)
                       |..|.+.|.+||++++.+.+.   .++.+.+.+.+.+++.||++++++.|.++..+++. ..|.+.+.. + |++.+++
T Consensus       160 ~A~~l~~~g~~Vtlv~~~~~~~---~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~-~~g~~~~i~  235 (320)
T 1trb_A          160 EALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQ-NSDNIESLD  235 (320)
T ss_dssp             HHHHHTTTSSEEEEECSSSSCC---CCHHHHHHHHHHHHTSSEEEECSCEEEEEEECSSSEEEEEEECCT-TCCCCEEEE
T ss_pred             HHHHHHhcCCeEEEEEeCCccc---cCHHHHHHHHHhcccCCeEEEcCceeEEEEcCCCceEEEEEEecc-CCCceEEEE
Confidence             778888999999999988765   36778888888899999999999999999886544 346665421 2 4457899


Q ss_pred             cCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCC-----CCCCCCEEEecccCCC-CCcHHHHHHHHHHHHHHhh
Q psy14927        999 CDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRF-----QTVIPNIFAIGDCIHG-PMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus       999 ~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~-----~ts~~~IyAiGD~~~~-~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                      +|.||+|+|++|+++++  . .+++++ +|+|.||+++     +|+.|||||+|||+.. +..+..|+.+|+.||.+|.
T Consensus       236 ~D~vv~a~G~~p~~~~~--~-~~l~~~-~G~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~  310 (320)
T 1trb_A          236 VAGLFVAIGHSPNTAIF--E-GQLELE-NGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAE  310 (320)
T ss_dssp             CSEEEECSCEEESCGGG--T-TTSCEE-TTEECCCCSSSSCTTBCSSTTEEECGGGGCSSSCCHHHHHHHHHHHHHHHH
T ss_pred             cCEEEEEeCCCCChHHh--c-cccccc-CceEEECCCcccccccCCCCCEEEcccccCCcchhhhhhhccHHHHHHHHH
Confidence            99999999999999874  3 467888 8999999986     7999999999999986 4689999999999999986

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=99.93  E-value=2.3e-25  Score=253.06  Aligned_cols=265  Identities=21%  Similarity=0.203  Sum_probs=189.5

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhh----ccccccccchhh----hhhhhh-HHHhhhhhhHHHHhhhCCeEE
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQ----AGDKGVKLNLET----MMGTKS-AAVKALTGGIAHLFKSNKVTQ  859 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~----~~~~g~~~~~~~----~~~~~~-~~~~~l~~~~~~~l~~~gV~~  859 (1074)
                      +.+|+||||||+|+++|+.|++     +++|+    ....++.+....    .+.... -....+...+...+.+.|+++
T Consensus         8 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~   87 (333)
T 1vdc_A            8 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTI   87 (333)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCCEE
Confidence            3459999999999999999998     67887    344555432211    111100 011345555677778889999


Q ss_pred             EeeeEEEecC--CeEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCCC----C-cceec---hhhHh--cchH----
Q psy14927        860 LNGHGKITGP--NTVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVD----E-ETIVS---STGAL--SLKK----  921 (1074)
Q Consensus       860 ~~g~v~~id~--~~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~----~-~~v~t---~~~~~--~~~~----  921 (1074)
                      +.++|+.++.  +.++|++ +|  .++.||+||+|||++|.  ++|+....    . ..+.+   .+...  ...+    
T Consensus        88 ~~~~v~~i~~~~~~~~v~~-~~--~~~~~~~vv~A~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V  164 (333)
T 1vdc_A           88 FTETVTKVDFSSKPFKLFT-DS--KAILADAVILAIGAVAKRLSFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAV  164 (333)
T ss_dssp             ECCCCCEEECSSSSEEEEC-SS--EEEEEEEEEECCCEEECCCCCBTCSSSSSCCBTTTEESCHHHHTTSGGGTTSEEEE
T ss_pred             EEeEEEEEEEcCCEEEEEE-CC--cEEEcCEEEECCCCCcCCCCCCCccccccccccCcEEEeccCccchhhcCCCeEEE
Confidence            9998887764  3456766 56  68999999999999863  34443220    0 12222   22222  1111    


Q ss_pred             ----------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCC--e-EEEEEeec
Q psy14927        922 ----------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGD--N-ITVTIENV  988 (1074)
Q Consensus       922 ----------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~--~-~~v~~~~~  988 (1074)
                                |..|.+.|.+||++++++.+. .  .+.+   ..+.+++.||++++++.|.++.++++  . ..+.+.+.
T Consensus       165 vG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~-~--~~~~---~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~  238 (333)
T 1vdc_A          165 IGGGDSAMEEANFLTKYGSKVYIIHRRDAFR-A--SKIM---QQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNV  238 (333)
T ss_dssp             ECCSHHHHHHHHHHTTTSSEEEEECSSSSCC-S--CHHH---HHHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEET
T ss_pred             ECCChHHHHHHHHHHhcCCeEEEEecCCcCC-c--cHHH---HHHHHhCCCeeEecCCceEEEeCCCCccceeeEEEEec
Confidence                      777888899999999988765 1  2222   22445788999999999999998653  3 34666642


Q ss_pred             cCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCC-CCCCCCCEEEecccCCC-CCcHHHHHHHHHHH
Q psy14927        989 KDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSR-FQTVIPNIFAIGDCIHG-PMLAHKAEDEGIVC 1066 (1074)
Q Consensus       989 ~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~-~~ts~~~IyAiGD~~~~-~~~~~~A~~~G~~a 1066 (1074)
                      . +|+..++++|.||+|+|++|+++++  . .+++++++|+|.||++ ++|+.|||||+|||+.. +.++..|+.+|+.|
T Consensus       239 ~-~g~~~~i~~D~vi~a~G~~p~~~~~--~-~~l~~~~~G~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~a  314 (333)
T 1vdc_A          239 V-TGDVSDLKVSGLFFAIGHEPATKFL--D-GGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYRQAITAAGTGCMA  314 (333)
T ss_dssp             T-TCCEEEEECSEEEECSCEEESCGGG--T-TSSCBCTTSCBCCCTTSCBCSSTTEEECGGGGCSSCCCHHHHHHHHHHH
T ss_pred             C-CCceEEEecCEEEEEeCCccchHHh--h-ccccccCCCCEEechhhcccCCCCEEEeeeccCCCchhHHHHHHhHHHH
Confidence            2 3555789999999999999999874  3 4788888999999986 68999999999999986 46899999999999


Q ss_pred             HHHhh
Q psy14927       1067 VEGIA 1071 (1074)
Q Consensus      1067 A~~I~ 1071 (1074)
                      |.+|.
T Consensus       315 a~~i~  319 (333)
T 1vdc_A          315 ALDAE  319 (333)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99986

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=99.93  E-value=1.3e-25  Score=255.62  Aligned_cols=264  Identities=15%  Similarity=0.199  Sum_probs=188.5

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchh----hhhhhhh-HHHhhhhhhHHHHhhhCCeEEEeee
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLE----TMMGTKS-AAVKALTGGIAHLFKSNKVTQLNGH  863 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~----~~~~~~~-~~~~~l~~~~~~~l~~~gV~~~~g~  863 (1074)
                      +.+|+||||||+|+++|+.|++     +++|+. ..|+.+.+.    ..+.... -....+...+.+.+.+.|++++.++
T Consensus        14 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~   92 (335)
T 2a87_A           14 VRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT-SFGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGADLRMED   92 (335)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS-SCSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCEEECCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCEEEEee
Confidence            4569999999999999999988     677754 444433221    1111100 0113455556677778899999999


Q ss_pred             EEEecC-CeEEE-EeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCC----cceec---hhhHhcchH-------------
Q psy14927        864 GKITGP-NTVTV-IKSDGSTEEVKTKNILIATGSEVTPFPGIEVDE----ETIVS---STGALSLKK-------------  921 (1074)
Q Consensus       864 v~~id~-~~~~v-~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~----~~v~t---~~~~~~~~~-------------  921 (1074)
                      ++.++. +.++| .+.+|  .++.||+||+|||+.|. .|.+++..    ..+.+   .++.....+             
T Consensus        93 v~~i~~~~~~~v~~~~~g--~~~~~d~lviAtG~~~~-~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e  169 (335)
T 2a87_A           93 VESVSLHGPLKSVVTADG--QTHRARAVILAMGAAAR-YLQVPGEQELLGRGVSSCATCDGFFFRDQDIAVIGGGDSAME  169 (335)
T ss_dssp             EEEEECSSSSEEEEETTS--CEEEEEEEEECCCEEEC-CCCCTHHHHTBTTTEESCHHHHGGGGTTCEEEEECSSHHHHH
T ss_pred             EEEEEeCCcEEEEEeCCC--CEEEeCEEEECCCCCcc-CCCCCchHhccCCceEEeeccchhhcCCCEEEEECCCHHHHH
Confidence            888875 33456 66777  67999999999999873 22333211    12222   222221111             


Q ss_pred             -hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcC
Q psy14927        922 -GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCD 1000 (1074)
Q Consensus       922 -A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D 1000 (1074)
                       |..|.+.|.+||++++++.+..   .+.+   ..+.+++.||++++++.++++.++++...+.+.+.. +|++.++++|
T Consensus       170 ~a~~l~~~g~~V~l~~~~~~~~~---~~~~---~~~~~~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~-~g~~~~i~~D  242 (335)
T 2a87_A          170 EATFLTRFARSVTLVHRRDEFRA---SKIM---LDRARNNDKIRFLTNHTVVAVDGDTTVTGLRVRDTN-TGAETTLPVT  242 (335)
T ss_dssp             HHHHHTTTCSEEEEECSSSSCSS---CTTH---HHHHHHCTTEEEECSEEEEEEECSSSCCEEEEEEET-TSCCEEECCS
T ss_pred             HHHHHHHhCCeEEEEEcCCcCCc---cHHH---HHHHhccCCcEEEeCceeEEEecCCcEeEEEEEEcC-CCceEEeecC
Confidence             7778888999999999887752   1111   124456789999999999999876543445555422 3556789999


Q ss_pred             EEEEccCCcccCCccCccccCcccCCCCCeeeCCC-CCCCCCCEEEecccCCC-CCcHHHHHHHHHHHHHHhh
Q psy14927       1001 ALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSR-FQTVIPNIFAIGDCIHG-PMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1001 ~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~-~~ts~~~IyAiGD~~~~-~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                      .||+|+|++|+++++  . .+++++++|+|.||++ ++|+.|||||+|||++. +..+..|+.+|+.||.+|.
T Consensus       243 ~vi~a~G~~p~~~~~--~-~~l~~~~~G~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aA~~i~  312 (335)
T 2a87_A          243 GVFVAIGHEPRSGLV--R-EAIDVDPDGYVLVQGRTTSTSLPGVFAAGDLVDRTYRQAVTAAGSGCAAAIDAE  312 (335)
T ss_dssp             CEEECSCEEECCTTT--B-TTBCBCTTSCBCCSTTSSBCSSTTEEECGGGTCCSCCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEccCCccChhHh--h-cccccCCCccEEeCCCCCccCCCCEEEeeecCCccHHHHHHHHHhHHHHHHHHH
Confidence            999999999999874  3 5788888999999985 68999999999999986 4689999999999999986

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.93  E-value=4.9e-25  Score=265.29  Aligned_cols=262  Identities=19%  Similarity=0.264  Sum_probs=192.1

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccccccccch----hhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eE
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNL----ETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HG  864 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~----~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v  864 (1074)
                      .+|+||||||||+++|..+++     +++++  ..|+.+..    ..++.........+...+...+.+.||+++.+ +|
T Consensus       213 ~dVvIIGgG~AGl~aA~~la~~G~~v~lie~--~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~~~~~v  290 (521)
T 1hyu_A          213 YDVLIVGSGPAGAAAAVYSARKGIRTGLMGE--RFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVIDSQSA  290 (521)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECS--STTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEECSCCE
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCeEEEEEC--CCCCcccccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEcCCEE
Confidence            349999999999999999998     45654  34443321    11111111112345556777788899999999 79


Q ss_pred             EEecCC-----eEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCCC-Ccceechhh---Hh-cchH-----------
Q psy14927        865 KITGPN-----TVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVD-EETIVSSTG---AL-SLKK-----------  921 (1074)
Q Consensus       865 ~~id~~-----~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~-~~~v~t~~~---~~-~~~~-----------  921 (1074)
                      +.+++.     .+.|.+++|  .++.||+||+|||++|.  .+||.... ...+..+..   .. ..+.           
T Consensus       291 ~~i~~~~~~~~~~~V~~~~g--~~~~~d~vVlAtG~~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~V~ViGgG~~g~  368 (521)
T 1hyu_A          291 SKLVPAATEGGLHQIETASG--AVLKARSIIIATGAKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGV  368 (521)
T ss_dssp             EEEECCSSTTSCEEEEETTS--CEEEEEEEEECCCEEECCCCCTTTTTTTTTTEECCTTCCGGGGBTSEEEEECCSHHHH
T ss_pred             EEEEeccCCCceEEEEECCC--CEEEcCEEEECCCCCcCCCCCCChhhhcCceEEEeecCchhhcCCCeEEEECCCHHHH
Confidence            888642     677888888  68999999999999763  34543211 112222211   11 1111           


Q ss_pred             --hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHh-CCCEEEeCceEEEEEecCCeE-EEEEeeccCCCCceEE
Q psy14927        922 --GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGK-QGMQFKLGTKVTGASKSGDNI-TVTIENVKDPTKKEEL  997 (1074)
Q Consensus       922 --A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~-~gV~i~~~~~v~~i~~~~~~~-~v~~~~~~~~g~~~~i  997 (1074)
                        |..|++.|.+||++++.+.+. .  +    ..+.+.|.+ .||++++++.++++.++++.+ .+.+.+.. +|+..++
T Consensus       369 E~A~~L~~~g~~Vtlv~~~~~l~-~--~----~~l~~~l~~~~gV~v~~~~~v~~i~~~~~~v~~v~~~~~~-~g~~~~i  440 (521)
T 1hyu_A          369 EAAIDLAGIVEHVTLLEFAPEMK-A--D----QVLQDKVRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRV-SGDIHSV  440 (521)
T ss_dssp             HHHHHHHHHBSEEEEECSSSSCC-S--C----HHHHHHHTTCTTEEEECSEEEEEEEECSSSEEEEEEEETT-TCCEEEE
T ss_pred             HHHHHHHhhCCEEEEEEeCcccC-c--C----HHHHHHHhcCCCcEEEeCCEEEEEEcCCCcEEEEEEEeCC-CCceEEE
Confidence              777888899999999998776 2  2    345567777 699999999999998865443 56666532 3555789


Q ss_pred             EcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCC-CcHHHHHHHHHHHHHHhh
Q psy14927        998 SCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGP-MLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus       998 ~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~-~~~~~A~~~G~~aA~~I~ 1071 (1074)
                      ++|.||+++|++||++++  .. +++++++|+|.||++++|++|||||+|||++.| +++..|+.+|..||.+|.
T Consensus       441 ~~D~vi~a~G~~pn~~~l--~~-~l~~~~~G~I~Vd~~~~ts~p~VfA~GD~~~~~~~~~~~A~~~g~~aa~~i~  512 (521)
T 1hyu_A          441 ALAGIFVQIGLLPNTHWL--EG-ALERNRMGEIIIDAKCETSVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAF  512 (521)
T ss_dssp             ECSEEEECCCEEESCGGG--TT-TSCBCTTSCBCCCTTCBCSSTTEEECSTTBCCSSCCHHHHHHHHHHHHHHHH
T ss_pred             EcCEEEECcCCCCCchHH--hh-hhccCCCCcEEeCCCCCCCCCCEEEeecccCCCcceeeehHHhHHHHHHHHH
Confidence            999999999999999874  33 488888999999999999999999999999865 589999999999999986

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.93  E-value=3e-25  Score=255.18  Aligned_cols=269  Identities=14%  Similarity=0.129  Sum_probs=196.5

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchh-------hhhhhhhHHHhhhhhhHHHHhhhCCeEEEe
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLE-------TMMGTKSAAVKALTGGIAHLFKSNKVTQLN  861 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~-------~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~  861 (1074)
                      +.+|+||||||+|+++|+.|++     +++|+.+..|+.+...       ..+.........+...+.+.+...|++++.
T Consensus        14 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~   93 (360)
T 3ab1_A           14 MRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPDVVL   93 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHHTTCCEEEC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHHHhCCEEEc
Confidence            3459999999999999999998     7888887776644210       001100001244555667777888999988


Q ss_pred             e-eEEEecCC---eEEEEeCCCCeeEEEcCeEEEccCCCC--CCCCCCCC-CC----cceec-hhhHhcc--hH------
Q psy14927        862 G-HGKITGPN---TVTVIKSDGSTEEVKTKNILIATGSEV--TPFPGIEV-DE----ETIVS-STGALSL--KK------  921 (1074)
Q Consensus       862 g-~v~~id~~---~~~v~~~~G~~~~i~~d~lIIATG~~p--~~ipgi~~-~~----~~v~t-~~~~~~~--~~------  921 (1074)
                      + +|+.++..   .+.|.+.+|  .++.||+||+|||+.+  +..|++++ ..    ..+.. ..+....  ..      
T Consensus        94 ~~~v~~i~~~~~~~~~v~~~~g--~~~~~~~li~AtG~~~~~~~~~~i~g~~~~~~~~~v~~~~~~~~~~~~~~vvVvG~  171 (360)
T 3ab1_A           94 NETVTKYTKLDDGTFETRTNTG--NVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYAVKSVEDFKGKRVVIVGG  171 (360)
T ss_dssp             SCCEEEEEECTTSCEEEEETTS--CEEEEEEEEECCTTCSCCBCCCGGGCCCTTTBTTTEESSCSCGGGGTTCEEEEECS
T ss_pred             CCEEEEEEECCCceEEEEECCC--cEEEeeEEEEccCCCcCCCCCCCCCCchhhCcCceEEEecCCHHHcCCCcEEEECC
Confidence            7 68777642   577888887  6799999999999942  12223333 11    11221 1111111  11      


Q ss_pred             -------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeE-EEEEeeccCCCC
Q psy14927        922 -------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNI-TVTIENVKDPTK  993 (1074)
Q Consensus       922 -------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~-~v~~~~~~~~g~  993 (1074)
                             |..|.+.|.+|+++++++.+. +  .+...+.+.+.+++.||++++++.|.++..+++.+ .|.+...  +|+
T Consensus       172 G~~g~e~A~~l~~~g~~V~lv~~~~~~~-~--~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~--~g~  246 (360)
T 3ab1_A          172 GDSALDWTVGLIKNAASVTLVHRGHEFQ-G--HGKTAHEVERARANGTIDVYLETEVASIEESNGVLTRVHLRSS--DGS  246 (360)
T ss_dssp             SHHHHHHHHHTTTTSSEEEEECSSSSCS-S--CSHHHHSSHHHHHHTSEEEESSEEEEEEEEETTEEEEEEEEET--TCC
T ss_pred             CHHHHHHHHHHHhcCCEEEEEEcCCCCC-C--CHHHHHHHHHHhhcCceEEEcCcCHHHhccCCCceEEEEEEec--CCC
Confidence                   777888899999999998776 2  24566777788889999999999999999865543 4555521  254


Q ss_pred             ceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCC---CCCcHHHHHHHHHHHHHHh
Q psy14927        994 KEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIH---GPMLAHKAEDEGIVCVEGI 1070 (1074)
Q Consensus       994 ~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~---~~~~~~~A~~~G~~aA~~I 1070 (1074)
                      ..++++|.||+|+|++|++++  +...+++++ +|+|.||++++|++|||||+|||+.   .++++..|..+|..+|.+|
T Consensus       247 ~~~i~~D~vi~a~G~~p~~~~--l~~~~~~~~-~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i  323 (360)
T 3ab1_A          247 KWTVEADRLLILIGFKSNLGP--LARWDLELY-ENALVVDSHMKTSVDGLYAAGDIAYYPGKLKIIQTGLSEATMAVRHS  323 (360)
T ss_dssp             EEEEECSEEEECCCBCCSCGG--GGGSSCCEE-TTEEECCTTSBCSSTTEEECSTTEECTTCCCSHHHHHHHHHHHHHHH
T ss_pred             eEEEeCCEEEECCCCCCCHHH--HHhhccccc-cCeeeecCCCcCCCCCEEEecCccCCCCccceeehhHHHHHHHHHHH
Confidence            578999999999999999987  567788887 7899999999999999999999986   3568999999999999998


Q ss_pred             hC
Q psy14927       1071 AG 1072 (1074)
Q Consensus      1071 ~~ 1072 (1074)
                      ++
T Consensus       324 ~~  325 (360)
T 3ab1_A          324 LS  325 (360)
T ss_dssp             HH
T ss_pred             Hh
Confidence            73

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=99.92  E-value=3.2e-26  Score=270.04  Aligned_cols=263  Identities=19%  Similarity=0.127  Sum_probs=187.2

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEec
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITG  868 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id  868 (1074)
                      .++|+||||||||+++|..|++     ++||+.+..|+.+.+. ++.+.  ....+.....+++.+.||+|+.|+.+.  
T Consensus       122 ~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~g-ip~~~--~~~~~~~~~~~~l~~~gv~~~~~~~v~--  196 (456)
T 2vdc_G          122 GLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVYG-IPGFK--LEKSVVERRVKLLADAGVIYHPNFEVG--  196 (456)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHHT-SCTTT--SCHHHHHHHHHHHHHTTCEEETTCCBT--
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeec-CCCcc--CCHHHHHHHHHHHHHCCcEEEeCCEec--
Confidence            5569999999999999999998     8999988888876543 22221  123455556778888999999995431  


Q ss_pred             CCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCC-CcceechhhHhc---------------------chH-----
Q psy14927        869 PNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVD-EETIVSSTGALS---------------------LKK-----  921 (1074)
Q Consensus       869 ~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~-~~~v~t~~~~~~---------------------~~~-----  921 (1074)
                      .   .++++++   .+.||+||||||+.++..+.+++. ...+++..+++.                     ..+     
T Consensus       197 ~---~v~~~~~---~~~~d~vvlAtG~~~~~~~~ipG~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVI  270 (456)
T 2vdc_G          197 R---DASLPEL---RRKHVAVLVATGVYKARDIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVL  270 (456)
T ss_dssp             T---TBCHHHH---HSSCSEEEECCCCCEECCTTCSCCTTTTEEEHHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEE
T ss_pred             c---EEEhhHh---HhhCCEEEEecCCCCCCCCCCCCCcCCCcEEHHHHHHHhhhhhcccccccccccccccCCCEEEEE
Confidence            1   1222222   357999999999974222233322 234554433221                     011     


Q ss_pred             ---------hhHHhhcCC-cEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEe-----
Q psy14927        922 ---------GSVWGRLGA-EVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIE-----  986 (1074)
Q Consensus       922 ---------A~~l~~~G~-~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~-----  986 (1074)
                               |..+.+.|. +||+++|++.+..+..+.+     .+.+++.||++++++.+++|.+++....|++.     
T Consensus       271 GgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~~~p~~~~e-----~~~~~~~Gv~~~~~~~~~~i~~~g~v~~v~~~~~~~~  345 (456)
T 2vdc_G          271 GGGDTAMDCVRTAIRQGATSVKCLYRRDRKNMPGSQRE-----VAHAEEEGVEFIWQAAPEGFTGDTVVTGVRAVRIHLG  345 (456)
T ss_dssp             CSSHHHHHHHHHHHHTTCSEEEEECSSCSTTCSSCHHH-----HHHHHHTTCEEECCSSSCCEEEEEEEETTEEEEEEEE
T ss_pred             CCChhHHHHHHHHHHcCCCEEEEEEeCCccCCCCCHHH-----HHHHHHCCCEEEeCCCceEEeCCCcEEEEEEEEEEec
Confidence                     667778887 5999999987633555443     25677889999999999999864221112221     


Q ss_pred             --eccC-------CCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCC-CCCCCCCEEEecccCCCCCcH
Q psy14927        987 --NVKD-------PTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSR-FQTVIPNIFAIGDCIHGPMLA 1056 (1074)
Q Consensus       987 --~~~~-------~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~-~~ts~~~IyAiGD~~~~~~~~ 1056 (1074)
                        +.++       +|++.++++|.||+|+|+.|++..+.+..+|++++++|+|.||++ ++|+.|||||+|||+.++.++
T Consensus       346 ~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p~~~~~~l~~~gl~~~~~G~i~vd~~~~~Ts~~~VfA~GD~~~g~~~v  425 (456)
T 2vdc_G          346 VADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFDEPELKVTRWGTLLVDHRTKMTNMDGVFAAGDIVRGASLV  425 (456)
T ss_dssp             EEEECTTCCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHSTTSCBCTTSSBCCCTTTCBCSSTTEEECGGGGSSCCSH
T ss_pred             ccCCcCCccccccCCcEEEEECCEEEECCCCCCCcchhhcccCCeeECCCCCEEECCCCCcCCCCCEEEeccccCCchHH
Confidence              1000       133468999999999999998762115778999999999999987 999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhC
Q psy14927       1057 HKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus      1057 ~~A~~~G~~aA~~I~~ 1072 (1074)
                      ..|+.+|+.||.+|.+
T Consensus       426 ~~A~~~G~~aA~~i~~  441 (456)
T 2vdc_G          426 VWAIRDGRDAAEGIHA  441 (456)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999863

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=99.92  E-value=1.5e-25  Score=268.12  Aligned_cols=269  Identities=19%  Similarity=0.206  Sum_probs=193.9

Q ss_pred             chhhhhhccccchHHHHHHHhh-------hhhhhccccccc-cchhh-hhhhh-hHHHh------------hh--h--hh
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVK-LNLET-MMGTK-SAAVK------------AL--T--GG  847 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~-~~~~~-~~~~~-~~~~~------------~l--~--~~  847 (1074)
                      +.+||||||||||++||..|++       +++++.+..+.. +.+.. +.... .....            .+  .  ..
T Consensus        11 ~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (493)
T 1m6i_A           11 HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSF   90 (493)
T ss_dssp             EEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGGG
T ss_pred             cCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhcccccccccccccccccchHh
Confidence            4559999999999999988876       688877654321 00000 00000 00000            00  0  00


Q ss_pred             H---HH--HhhhCCeEEEee-eEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCC----Cccee---chh
Q psy14927        848 I---AH--LFKSNKVTQLNG-HGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVD----EETIV---SST  914 (1074)
Q Consensus       848 ~---~~--~l~~~gV~~~~g-~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~----~~~v~---t~~  914 (1074)
                      +   ..  .+.+.||+++.| +|+.+|....+|++++|  .++.||+||||||++|..+|..+..    ...++   +.+
T Consensus        91 ~~~~~~l~~~~~~gv~~~~g~~v~~id~~~~~V~~~~g--~~i~yd~lviATGs~p~~~~~~~~~~~~~~~~v~~~~~~~  168 (493)
T 1m6i_A           91 YVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDG--SQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIG  168 (493)
T ss_dssp             SBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTS--CEEEEEEEEECCCEEECCCHHHHTSCHHHHHTEEECCSHH
T ss_pred             hcchhhhhhhhcCCeEEEcCCEEEEEECCCCEEEECCC--CEEECCEEEECCCCCCCCCCCcccccccccCceEEEcCHH
Confidence            0   01  113569999999 78889887778888888  6899999999999998654432211    11222   444


Q ss_pred             hHhcchH--------------------hhHHhh----cCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCce
Q psy14927        915 GALSLKK--------------------GSVWGR----LGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTK  970 (1074)
Q Consensus       915 ~~~~~~~--------------------A~~l~~----~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~  970 (1074)
                      ++..+..                    |..|.+    .|.+|+++++.+.++.+.+++.+...+.+.+++.||++++++.
T Consensus       169 d~~~l~~~~~~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~~l~~~~~~~~~~~l~~~GV~v~~~~~  248 (493)
T 1m6i_A          169 DFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAI  248 (493)
T ss_dssp             HHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEECSCC
T ss_pred             HHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccccccCCHHHHHHHHHHHHhcCCEEEeCCE
Confidence            4433321                    555554    5789999998887765667889999999999999999999999


Q ss_pred             EEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCC-CCCeeeCCCCCCCCCCEEEeccc
Q psy14927        971 VTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDE-KGRVPVNSRFQTVIPNIFAIGDC 1049 (1074)
Q Consensus       971 v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~-~G~I~Vd~~~~ts~~~IyAiGD~ 1049 (1074)
                      |+++..+++.+.|++.+      ++++++|.||+|+|.+||+++  ++.+|+++++ +|+|.||++++| .|+|||+|||
T Consensus       249 V~~i~~~~~~~~v~l~d------G~~i~aD~Vv~a~G~~pn~~l--~~~~gl~~~~~~ggi~Vd~~l~t-~~~IyA~GD~  319 (493)
T 1m6i_A          249 VQSVGVSSGKLLIKLKD------GRKVETDHIVAAVGLEPNVEL--AKTGGLEIDSDFGGFRVNAELQA-RSNIWVAGDA  319 (493)
T ss_dssp             EEEEEEETTEEEEEETT------SCEEEESEEEECCCEEECCTT--HHHHTCCBCTTTCSEECCTTCEE-ETTEEECGGG
T ss_pred             EEEEEecCCeEEEEECC------CCEEECCEEEECCCCCccHHH--HHHcCCccccCCCcEEECCCccc-CCCeeEeeee
Confidence            99998766666666544      458999999999999999987  6788898886 689999999998 6999999999


Q ss_pred             CCCC---------CcHHHHHHHHHHHHHHhhCC
Q psy14927       1050 IHGP---------MLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1050 ~~~~---------~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      +..+         ..+..|..||+.||.||+|.
T Consensus       320 a~~~~~~~g~~~~~~~~~A~~qg~~aa~ni~g~  352 (493)
T 1m6i_A          320 ACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGA  352 (493)
T ss_dssp             EEEEETTTEEECCCCHHHHHHHHHHHHHHHTSC
T ss_pred             EeccCcccCccccchHHHHHHHHHHHHHHhcCC
Confidence            8632         24678999999999999874

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=99.92  E-value=1.2e-25  Score=263.28  Aligned_cols=261  Identities=15%  Similarity=0.187  Sum_probs=196.0

Q ss_pred             hhhhhccccchHHHHHHHhh--------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEe
Q psy14927        796 VVLNTLGNCAAVQANYHLAT--------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKIT  867 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~--------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~i  867 (1074)
                      +|||||||++|+++|..|++        +++|+.+..+..+.+........ ...++...+.+.+.+.||+++.++|+.+
T Consensus         3 ~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gv~~~~~~v~~i   81 (409)
T 3h8l_A            3 KVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVR-DVDELKVDLSEALPEKGIQFQEGTVEKI   81 (409)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCC-CCCCEEEEHHHHTGGGTCEEEECEEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCc-CHHHHHHHHHHHHhhCCeEEEEeeEEEE
Confidence            49999999999999999986        67887776655444433332222 1245566678888888999999999999


Q ss_pred             cCCeEEEEeCCCC--eeEEEcCeEEEccCCCCC--CCCCCCCCCcceechhhHhcch-----------------------
Q psy14927        868 GPNTVTVIKSDGS--TEEVKTKNILIATGSEVT--PFPGIEVDEETIVSSTGALSLK-----------------------  920 (1074)
Q Consensus       868 d~~~~~v~~~~G~--~~~i~~d~lIIATG~~p~--~ipgi~~~~~~v~t~~~~~~~~-----------------------  920 (1074)
                      +++...|++.+|.  ..++.||+||||||++|.  .+||+......+.+.++...+.                       
T Consensus        82 ~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~l~~~~~~~vViG~G~f~~~~~  161 (409)
T 3h8l_A           82 DAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELVKGWDKYGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHN  161 (409)
T ss_dssp             ETTTTEEEEECTTSCEEEEECSEEEECCCCEECGGGSBTHHHHCEESSSTTHHHHHHHHHHHCCSEEEEEEECCBCCCCS
T ss_pred             eCCCCEEEEccCCcccceeeCCEEEECCCCCcCccCCCChhhcCcCcCCHHHHHHHHHHHHHhcCCeEEEEecccccCCC
Confidence            8876566666552  245999999999999873  3555432111222222211110                       


Q ss_pred             ----------------------H-----hhHHhhcCC----cEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCc
Q psy14927        921 ----------------------K-----GSVWGRLGA----EVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGT  969 (1074)
Q Consensus       921 ----------------------~-----A~~l~~~G~----~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~  969 (1074)
                                            +     +..+.+.|.    +|+++++.+ ++ +.+++.+.+.+.+.+++.||++++++
T Consensus       162 ~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~~~g~~~~~~v~~~~~~~-~l-~~~~~~~~~~~~~~l~~~gV~~~~~~  239 (409)
T 3h8l_A          162 PKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGE-YL-SDLSPNSRKAVASIYNQLGIKLVHNF  239 (409)
T ss_dssp             SCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHHTTTCTTTEEEEEECSSS-SS-TTBCHHHHHHHHHHHHHHTCEEECSC
T ss_pred             ccccccccccCCCCcccCCHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCc-cc-cccCHHHHHHHHHHHHHCCCEEEcCC
Confidence                                  1     345667774    899999988 66 67889999999999999999999999


Q ss_pred             eEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcc-cCCCCCeeeCCCCCC-CCCCEEEec
Q psy14927        970 KVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIE-KDEKGRVPVNSRFQT-VIPNIFAIG 1047 (1074)
Q Consensus       970 ~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~-ld~~G~I~Vd~~~~t-s~~~IyAiG 1047 (1074)
                      .|++++++  +  |.+.+      ++++++|.||+++|++|+. +  +...++. .+++|+|.||++++| ++||||++|
T Consensus       240 ~v~~i~~~--~--v~~~~------g~~~~~D~vi~a~G~~~~~-~--l~~~~~~l~~~~G~i~vd~~~~~~~~~~vfa~G  306 (409)
T 3h8l_A          240 KIKEIREH--E--IVDEK------GNTIPADITILLPPYTGNP-A--LKNSTPDLVDDGGFIPTDLNMVSIKYDNVYAVG  306 (409)
T ss_dssp             CEEEECSS--E--EEETT------SCEEECSEEEEECCEECCH-H--HHTSCGGGSCTTSCBCBBTTSBBSSCTTEEECG
T ss_pred             ceEEECCC--e--EEECC------CCEEeeeEEEECCCCCccH-H--HHhccccCcCCCCCEEeCcccccCCCCCEEEee
Confidence            99999763  3  55544      4589999999999999985 3  4555333 467899999999998 999999999


Q ss_pred             ccCC--CCCcHHHHHHHHHHHHHHhhC
Q psy14927       1048 DCIH--GPMLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus      1048 D~~~--~~~~~~~A~~~G~~aA~~I~~ 1072 (1074)
                      ||++  .|+++..|..||..+|.||++
T Consensus       307 D~~~~~~~~~~~~A~~q~~~aa~~i~~  333 (409)
T 3h8l_A          307 DANSMTVPKLGYLAVMTGRIAAQHLAN  333 (409)
T ss_dssp             GGBTTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred             hhccCCCCcHHHHHHHHHHHHHHHHHH
Confidence            9997  477899999999999999974

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=99.90  E-value=3.5e-23  Score=238.42  Aligned_cols=261  Identities=9%  Similarity=0.086  Sum_probs=181.6

Q ss_pred             hhhhhhccccchHHHHHHHhh------hhhhhccccccccch-h---------------hh------hhh--------h-
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT------KLFTQAGDKGVKLNL-E---------------TM------MGT--------K-  837 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~------~l~e~~~~~g~~~~~-~---------------~~------~~~--------~-  837 (1074)
                      .+|+||||||+|+++|..|++      +++|+.+ .|+.+.. +               .+      ...        . 
T Consensus         5 ~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~   83 (369)
T 3d1c_A            5 HKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFNEE   83 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHCCS
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCccccCcccccccCcchhcccCCchhhhhcccccccccccccc
Confidence            459999999999999999987      5677665 4332100 0               00      000        0 


Q ss_pred             hHHHhhhhhhHHHHhhhCCeEEEee-eEEEecCC--eEEEEeCCCCeeEEEcCeEEEccCCCCC-CCCCCCCCCcceech
Q psy14927        838 SAAVKALTGGIAHLFKSNKVTQLNG-HGKITGPN--TVTVIKSDGSTEEVKTKNILIATGSEVT-PFPGIEVDEETIVSS  913 (1074)
Q Consensus       838 ~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id~~--~~~v~~~~G~~~~i~~d~lIIATG~~p~-~ipgi~~~~~~v~t~  913 (1074)
                      ......+...+...+.+.|++++.+ .|+.++..  .+.|.+.+|   ++.||+||||||+.+. .+|+     ..++++
T Consensus        84 ~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g---~~~~d~vVlAtG~~~~p~ip~-----~~~~~~  155 (369)
T 3d1c_A           84 HISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE---TYHADYIFVATGDYNFPKKPF-----KYGIHY  155 (369)
T ss_dssp             SCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC---CEEEEEEEECCCSTTSBCCCS-----SSCEEG
T ss_pred             CCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC---EEEeCEEEECCCCCCccCCCC-----Cceech
Confidence            0001233444566777889999998 57777754  577777766   5899999999999863 3443     223333


Q ss_pred             hhHhcchH------------------hhHHhhcCCcEEEEecCCccCCC------CCCHHHHHHHHHHHHhCC-CEEEeC
Q psy14927        914 TGALSLKK------------------GSVWGRLGAEVTAIEFMNAIGGM------GIDGEVAKQFQRILGKQG-MQFKLG  968 (1074)
Q Consensus       914 ~~~~~~~~------------------A~~l~~~G~~Vtlv~~~~~~~~~------~~~~~~~~~~~~~l~~~g-V~i~~~  968 (1074)
                      .++.....                  |..|.+.|.+||++++++.++.+      .+++...+.+.+.|++.| |+++++
T Consensus       156 ~~~~~~~~~~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~d~~~~~~~~~~~~l~~~l~~~g~v~~~~~  235 (369)
T 3d1c_A          156 SEIEDFDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARIEMNVH  235 (369)
T ss_dssp             GGCSCGGGSCSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC----------CTTSCCHHHHHHHHHHHHTTCCEEEECS
T ss_pred             hhcCChhhcCCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCccCCHHHHHHHHHHHhhCCcEEEecC
Confidence            33322211                  77888899999999999877632      256777888889999997 999999


Q ss_pred             ceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCC-CCCCCCCEEEec
Q psy14927        969 TKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSR-FQTVIPNIFAIG 1047 (1074)
Q Consensus       969 ~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~-~~ts~~~IyAiG 1047 (1074)
                      +.|.++..+++.+.+++.+    |+ ....+|.||+|+|++|+++++  ...+++ +++|+|.||++ ++|++|||||+|
T Consensus       236 ~~v~~i~~~~~~~~v~~~~----g~-~~~~~d~vi~a~G~~~~~~~~--~~~~~~-~~~g~i~v~~~~~~t~~~~v~a~G  307 (369)
T 3d1c_A          236 YTVKDIDFNNGQYHISFDS----GQ-SVHTPHEPILATGFDATKNPI--VQQLFV-TTNQDIKLTTHDESTRYPNIFMIG  307 (369)
T ss_dssp             CCEEEEEEETTEEEEEESS----SC-CEEESSCCEECCCBCGGGSHH--HHHHSC-CTTSCCCBCTTSBBSSSTTEEECS
T ss_pred             cEEEEEEecCCceEEEecC----Ce-EeccCCceEEeeccCCccchh--hhhhcc-CCCCCEEechhhcccCCCCeEEec
Confidence            9999997666666676654    32 234579999999999999763  344566 78899999975 668999999999


Q ss_pred             ccCCCCC----cHHHHHHHHHHHHHHhhC
Q psy14927       1048 DCIHGPM----LAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus      1048 D~~~~~~----~~~~A~~~G~~aA~~I~~ 1072 (1074)
                      ||+..+.    .+..+..+|..+|++|.+
T Consensus       308 D~~~~~~~~~~~~~~~~~~a~~~a~~l~~  336 (369)
T 3d1c_A          308 ATVENDNAKLCYIYKFRARFAVLAHLLTQ  336 (369)
T ss_dssp             TTCCCSSCCCCSHHHHGGGHHHHHHHHHH
T ss_pred             cccccCCeeEEEEehhhHHHHHHHHHHhc
Confidence            9987532    345677889999999875

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=99.89  E-value=5.2e-24  Score=274.96  Aligned_cols=263  Identities=17%  Similarity=0.105  Sum_probs=189.3

Q ss_pred             chhhhhhccccchHHHHHHHhh------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEe
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKIT  867 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~i  867 (1074)
                      .++|+||||||||++||..|++      ++||+.+..||.+... ++.+..  ...+..+..+++.+.||+|+.|+++..
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~~~-ip~~~~--~~~~~~~~~~~~~~~gv~~~~~~~v~~  263 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSE-IPQFRL--PYDVVNFEIELMKDLGVKIICGKSLSE  263 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHT-SCTTTS--CHHHHHHHHHHHHTTTCEEEESCCBST
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCcccccc-CCcccC--CHHHHHHHHHHHHHCCcEEEcccEecc
Confidence            5569999999999999999998      6888887787765322 222211  123444556778889999999964421


Q ss_pred             cCCeEEEEeCCCCeeEEEcCeEEEccCCC-CCCCC---CCCCCCcceechhhHhcc----------------h----H--
Q psy14927        868 GPNTVTVIKSDGSTEEVKTKNILIATGSE-VTPFP---GIEVDEETIVSSTGALSL----------------K----K--  921 (1074)
Q Consensus       868 d~~~~~v~~~~G~~~~i~~d~lIIATG~~-p~~ip---gi~~~~~~v~t~~~~~~~----------------~----~--  921 (1074)
                        .  .++++++  .++.||+||||||+. |..+|   |++. ...++++.+++..                .    .  
T Consensus       264 --~--~v~~~~~--~~~~~d~vvlAtGa~~p~~l~~~~G~~~-~~gv~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~Vv  336 (1025)
T 1gte_A          264 --N--EITLNTL--KEEGYKAAFIGIGLPEPKTDDIFQGLTQ-DQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVI  336 (1025)
T ss_dssp             --T--SBCHHHH--HHTTCCEEEECCCCCEECCCGGGTTCCT-TTTEEEHHHHHHHHHHHHCBTTBSCCCCCCCCCSEEE
T ss_pred             --c--eEEhhhc--CccCCCEEEEecCCCCCCCCCCCCCCCC-CCCEEEhHHHHHHHHhhcccccccccccccccCCcEE
Confidence              1  2333333  347899999999994 65443   4322 2457776665431                0    1  


Q ss_pred             -----------hhHHhhcCC-cEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeE-EEEEeec
Q psy14927        922 -----------GSVWGRLGA-EVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNI-TVTIENV  988 (1074)
Q Consensus       922 -----------A~~l~~~G~-~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~-~v~~~~~  988 (1074)
                                 |..+.++|. +||++++++....+.+++++     +.+++.||++++++.+.++..+++.+ .|++.+.
T Consensus       337 VIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~~~~~~~~~e~-----~~~~~~Gv~~~~~~~~~~i~~~~g~v~~v~~~~~  411 (1025)
T 1gte_A          337 VLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEV-----ELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFVRT  411 (1025)
T ss_dssp             EECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCSCHHHH-----HHHHHTTCEEECSEEEEEEEEETTEEEEEEEEEE
T ss_pred             EECCChHHHHHHHHHHHcCCCEEEEEEecChhhCCCCHHHH-----HHHHHcCCEEEeCCCceEEEccCCeEEEEEEEEe
Confidence                       778888996 89999999843336666554     46778899999999999998754443 3444310


Q ss_pred             --cCC-------CCceEEEcCEEEEccCCcccCCccCccc-cCcccCCCCCeeeCC-CCCCCCCCEEEecccCCCCCcHH
Q psy14927        989 --KDP-------TKKEELSCDALLVCVGRRPYTHNLGLEE-IGIEKDEKGRVPVNS-RFQTVIPNIFAIGDCIHGPMLAH 1057 (1074)
Q Consensus       989 --~~~-------g~~~~i~~D~vi~a~G~~p~~~~l~l~~-~gl~ld~~G~I~Vd~-~~~ts~~~IyAiGD~~~~~~~~~ 1057 (1074)
                        +++       |++.++++|.||+++|++|+...+ +.. .|+++|++|+|.||+ +++|+.|||||+|||++++.++.
T Consensus       412 ~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~l-~~~~~gl~~~~~G~I~vd~~~~~Ts~~~VfA~GD~~~~~~~~~  490 (1025)
T 1gte_A          412 EQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKV-KEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMANTTV  490 (1025)
T ss_dssp             EECTTSCEEEEEEEEEEEECSEEEECSCEECCCHHH-HHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGCSCCCHH
T ss_pred             EEcCCCCcccCCCceEEEECCEEEECCCCCCCchhh-hhcccCceECCCCCEEECCCCCccCCCCEEEeCCCCCCchHHH
Confidence              001       223579999999999998754332 333 589999999999997 89999999999999999888999


Q ss_pred             HHHHHHHHHHHHhhC
Q psy14927       1058 KAEDEGIVCVEGIAG 1072 (1074)
Q Consensus      1058 ~A~~~G~~aA~~I~~ 1072 (1074)
                      .|+.+|+.||.+|.+
T Consensus       491 ~A~~~G~~aA~~i~~  505 (1025)
T 1gte_A          491 ESVNDGKQASWYIHK  505 (1025)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999999973

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.89  E-value=3.7e-23  Score=236.60  Aligned_cols=260  Identities=15%  Similarity=0.165  Sum_probs=176.1

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccccccccchh-------------hhhhhh-------hHHHhhhhhhHH
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLE-------------TMMGTK-------SAAVKALTGGIA  849 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~-------------~~~~~~-------~~~~~~l~~~~~  849 (1074)
                      .+|+||||||+|+++|..|++     +++|+.+..|+.+...             .++...       ......+...+.
T Consensus         4 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   83 (357)
T 4a9w_A            4 VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYLA   83 (357)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHHH
Confidence            359999999999999999998     8899887776653210             000000       000134555677


Q ss_pred             HHhhhCCeEEEee-eEEEecC--CeEE-EEeCCCCeeEEEcCeEEEccCC--CC--CCCCCCCCCCcceechhhHhcchH
Q psy14927        850 HLFKSNKVTQLNG-HGKITGP--NTVT-VIKSDGSTEEVKTKNILIATGS--EV--TPFPGIEVDEETIVSSTGALSLKK  921 (1074)
Q Consensus       850 ~~l~~~gV~~~~g-~v~~id~--~~~~-v~~~~G~~~~i~~d~lIIATG~--~p--~~ipgi~~~~~~v~t~~~~~~~~~  921 (1074)
                      ..+...|++++.+ +|+.++.  +.+. |.+.+|   ++.||+||+|||.  .|  +.+||........++...+.....
T Consensus        84 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g---~~~~d~vV~AtG~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  160 (357)
T 4a9w_A           84 QYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR---QWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYSTPAP  160 (357)
T ss_dssp             HHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC---EEEEEEEEECCCSGGGBCCCCCTTGGGCCSEEEEGGGCCCSGG
T ss_pred             HHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC---EEEeCEEEECCCCCCCCCCCCCCCccccCCcEEEeccCCChhh
Confidence            7788889999998 6777754  4566 777776   7999999999996  44  344554322223333333222111


Q ss_pred             ------------------hhHHhhcCCcEEEEecC-CccCCCCC-CHHHHHHHHHHHH----------------------
Q psy14927        922 ------------------GSVWGRLGAEVTAIEFM-NAIGGMGI-DGEVAKQFQRILG----------------------  959 (1074)
Q Consensus       922 ------------------A~~l~~~G~~Vtlv~~~-~~~~~~~~-~~~~~~~~~~~l~----------------------  959 (1074)
                                        |..|.+.| +||++.++ +.+++... ++.+.+.+.+.+.                      
T Consensus       161 ~~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (357)
T 4a9w_A          161 FAGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGREPDLPPGGFGDIVMVP  239 (357)
T ss_dssp             GTTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSCCCBCCTTCCTHHHHTC----------------------CBCCCH
T ss_pred             cCCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCCCeecchhhcCccHHHHHHHHHhccccccCCCcccccccCcccCh
Confidence                              77788888 69999988 45552222 2333333333332                      


Q ss_pred             ------hCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeC
Q psy14927        960 ------KQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVN 1033 (1074)
Q Consensus       960 ------~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd 1033 (1074)
                            +.|+ +..+..+.+++.+  +  +.+.+      ++++++|.||+++|++|++++  +...++. +++|+|.||
T Consensus       240 ~~~~~~~~g~-i~~~~~v~~~~~~--~--v~~~~------g~~i~~D~vi~a~G~~p~~~~--l~~~gl~-~~~G~i~vd  305 (357)
T 4a9w_A          240 PVLDARARGV-LAAVPPPARFSPT--G--MQWAD------GTERAFDAVIWCTGFRPALSH--LKGLDLV-TPQGQVEVD  305 (357)
T ss_dssp             HHHHHHHTTC-CCEECCCSEEETT--E--EECTT------SCEEECSEEEECCCBCCCCGG--GTTTTCB-CTTSCBCBC
T ss_pred             hHHHHHhcCc-eEEecCcceEeCC--e--eEECC------CCEecCCEEEECCCcCCCCcc--cCccccc-CCCCCcccc
Confidence                  3444 4445566666552  2  44433      468999999999999999988  5778888 889999999


Q ss_pred             CC--CCCCCCCEEEec--ccCC-CCCcHHHHHHHHHHHHHHhhC
Q psy14927       1034 SR--FQTVIPNIFAIG--DCIH-GPMLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus      1034 ~~--~~ts~~~IyAiG--D~~~-~~~~~~~A~~~G~~aA~~I~~ 1072 (1074)
                      ++  ++|+.|||||+|  ||++ .+..+..|..+|+.+|.+|..
T Consensus       306 ~~~l~~t~~~~vya~Gd~d~~~~~~~~~~~A~~~g~~~a~~i~~  349 (357)
T 4a9w_A          306 GSGLRALAVPSVWLLGYGDWNGMASATLIGVTRYAREAVRQVTA  349 (357)
T ss_dssp             TTSCBBSSCTTEEECSSCGGGSTTCSSTTTHHHHHHHHHHHHHH
T ss_pred             CCcccCCCCCCeEEeccccccccchhhhhhhHHHHHHHHHHHHH
Confidence            98  889999999999  6666 466788899999999999863

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=99.88  E-value=6.7e-23  Score=242.36  Aligned_cols=263  Identities=12%  Similarity=0.100  Sum_probs=181.6

Q ss_pred             chhhhhhccccchHHHHHHHhh-------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEE
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKI  866 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~  866 (1074)
                      .++|+||||||+|+.+|..|++       ++|++.+.+++.+.+...+.+ . ....+...+.+.+.+.||+|+.++.. 
T Consensus         6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~~p~~-~-~~~~~~~~~~~~~~~~gv~~~~~~~v-   82 (460)
T 1cjc_A            6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDH-P-EVKNVINTFTQTARSDRCAFYGNVEV-   82 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTC-G-GGGGHHHHHHHHHTSTTEEEEBSCCB-
T ss_pred             CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecccCCCC-c-cHHHHHHHHHHHHHhCCcEEEeeeEE-
Confidence            3459999999999999999987       688888777766544322222 1 12455666778888899999998432 


Q ss_pred             ecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCC-CCcceechhhHhc--------------c--hH--------
Q psy14927        867 TGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEV-DEETIVSSTGALS--------------L--KK--------  921 (1074)
Q Consensus       867 id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~-~~~~v~t~~~~~~--------------~--~~--------  921 (1074)
                       . .  .|++.+.   ++.||+||||||+.|+..|.+++ +...++++.+++.              +  +.        
T Consensus        83 -~-~--~V~~~~~---~~~~d~lVlAtGs~~~~~~~ipG~~~~gv~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIGgG~  155 (460)
T 1cjc_A           83 -G-R--DVTVQEL---QDAYHAVVLSYGAEDHQALDIPGEELPGVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGN  155 (460)
T ss_dssp             -T-T--TBCHHHH---HHHSSEEEECCCCCEECCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSH
T ss_pred             -e-e--EEEeccc---eEEcCEEEEecCcCCCCCCCCCCCCCCcEEEHHHHHHHhhcCccccccccCCCCCEEEEECCCH
Confidence             2 1  1323332   47899999999998632233333 2345777666521              1  11        


Q ss_pred             -----hhHHh--------------------hcCC-cEEEEecCCccCC-------------CC-----------------
Q psy14927        922 -----GSVWG--------------------RLGA-EVTAIEFMNAIGG-------------MG-----------------  945 (1074)
Q Consensus       922 -----A~~l~--------------------~~G~-~Vtlv~~~~~~~~-------------~~-----------------  945 (1074)
                           |..|.                    +.|. +|+|+.|++.+..             |.                 
T Consensus       156 ~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~~~~ft~~el~~l~~lp~~~~~~~~~~~~~~~~~~  235 (460)
T 1cjc_A          156 VALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRI  235 (460)
T ss_dssp             HHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHT
T ss_pred             HHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChHhhccCHHHHHHhhcCCCceeEechhhhcchhhhh
Confidence                 66666                    5676 7999999886521             11                 


Q ss_pred             --CCHH---HHHHHHHHHHh--------------CCCEEEeCceEEEEEecC-C--eEEEEEeecc-----------CCC
Q psy14927        946 --IDGE---VAKQFQRILGK--------------QGMQFKLGTKVTGASKSG-D--NITVTIENVK-----------DPT  992 (1074)
Q Consensus       946 --~~~~---~~~~~~~~l~~--------------~gV~i~~~~~v~~i~~~~-~--~~~v~~~~~~-----------~~g  992 (1074)
                        .++.   +.+.+.+.+.+              .||++++++.+.+|.+++ +  ...|++.+..           .+|
T Consensus       236 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~~l~~~~~~~~~~~~g  315 (460)
T 1cjc_A          236 KEAARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTG  315 (460)
T ss_dssp             TTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEE
T ss_pred             hhccHHHHHHHHHHHHHHHhccccccccCCCCCCceEEEECCCChheEEcCCCCceEEEEEEEEEEEccccCCCcccCCC
Confidence              1111   22333344445              899999999999998763 2  2234443200           013


Q ss_pred             CceEEEcCEEEEccCCcccCCccCccccCc-ccCCCCCeeeCCCCCCC-CCCEEEecccCCCCC-cHHHHHHHHHHHHHH
Q psy14927        993 KKEELSCDALLVCVGRRPYTHNLGLEEIGI-EKDEKGRVPVNSRFQTV-IPNIFAIGDCIHGPM-LAHKAEDEGIVCVEG 1069 (1074)
Q Consensus       993 ~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl-~ld~~G~I~Vd~~~~ts-~~~IyAiGD~~~~~~-~~~~A~~~G~~aA~~ 1069 (1074)
                      +.++++||+||+++|++|++ +     .|+ ++|++|.|.||++++|+ +|||||+|||+.+|. .+..|+.+|..+|.+
T Consensus       316 ~~~~i~~d~Vi~a~G~~p~~-l-----~gl~~~d~~g~i~vn~~~rt~~~p~vya~Gd~~~g~~~~i~~a~~~g~~aa~~  389 (460)
T 1cjc_A          316 DVEDLPCGLVLSSIGYKSRP-I-----DPSVPFDPKLGVVPNMEGRVVDVPGLYCSGWVKRGPTGVITTTMTDSFLTGQI  389 (460)
T ss_dssp             EEEEEECSEEEECCCEECCC-C-----CTTSCCBTTTTBCCEETTEETTCTTEEECTHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred             ceEEEEcCEEEECCCCCCCC-C-----CCCcccccCCCeeECCCCcCcCCCCEEEEEeCCcCCCccHHHHHHHHHHHHHH
Confidence            44789999999999999997 2     467 88888999999999998 799999999998765 467899999999999


Q ss_pred             hhC
Q psy14927       1070 IAG 1072 (1074)
Q Consensus      1070 I~~ 1072 (1074)
                      |++
T Consensus       390 i~~  392 (460)
T 1cjc_A          390 LLQ  392 (460)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            874

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=99.86  E-value=1.9e-22  Score=238.26  Aligned_cols=259  Identities=13%  Similarity=0.147  Sum_probs=179.5

Q ss_pred             hhhhhhccccchHHHHHHHhh------------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT------------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG  862 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~------------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g  862 (1074)
                      ++|+||||||||+.+|..|++            ++|++.+.+++.+.+...+.+.  ....+...+...+.+.||+|+.+
T Consensus         4 ~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~gv~p~~~--~~~~~~~~~~~~~~~~~v~~~~~   81 (456)
T 1lqt_A            4 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHP--KIKSISKQFEKTAEDPRFRFFGN   81 (456)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCT--GGGGGHHHHHHHHTSTTEEEEES
T ss_pred             CEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccccccCCCCC--CHHHHHHHHHHHHhcCCCEEEee
Confidence            459999999999999999866            3677777777665443222221  22456666778888899999988


Q ss_pred             eEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCC-CC--CCCCCCCCCcceechhhHh-----------cc-----hH--
Q psy14927        863 HGKITGPNTVTVIKSDGSTEEVKTKNILIATGSE-VT--PFPGIEVDEETIVSSTGAL-----------SL-----KK--  921 (1074)
Q Consensus       863 ~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~-p~--~ipgi~~~~~~v~t~~~~~-----------~~-----~~--  921 (1074)
                      .  .++ .  .|+++++   ++.||+||||||+. |.  ++||..  ...++++.++.           ..     ..  
T Consensus        82 v--~v~-~--~v~~~~~---~~~~d~lViAtG~~~~~~~~ipG~~--~~gv~~~~~~~~~~~~~~d~~~~~~~~~~~~vv  151 (456)
T 1lqt_A           82 V--VVG-E--HVQPGEL---SERYDAVIYAVGAQSDRMLNIPGED--LPGSIAAVDFVGWYNAHPHFEQVSPDLSGARAV  151 (456)
T ss_dssp             C--CBT-T--TBCHHHH---HHHSSEEEECCCCCEECCCCCTTTT--STTEEEHHHHHHHHTTCGGGTTCCCCCCSSEEE
T ss_pred             E--EEC-C--EEEECCC---eEeCCEEEEeeCCCCCCCCCCCCCC--CCCcEEHHHHHhhhhcCcccccchhhcCCCEEE
Confidence            3  232 2  2334444   47899999999997 33  345543  33566666552           11     11  


Q ss_pred             -----------hhHHhhc--------------------C-CcEEEEecCCccCCCCCCH-------------------HH
Q psy14927        922 -----------GSVWGRL--------------------G-AEVTAIEFMNAIGGMGIDG-------------------EV  950 (1074)
Q Consensus       922 -----------A~~l~~~--------------------G-~~Vtlv~~~~~~~~~~~~~-------------------~~  950 (1074)
                                 |..|.+.                    | .+|+++.|++.+. ..+.+                   ++
T Consensus       152 VIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~-~~f~~~elrel~~lp~~~~~~~~~~~  230 (456)
T 1lqt_A          152 VIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQ-AAFTTLELRELADLDGVDVVIDPAEL  230 (456)
T ss_dssp             EECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGG-CCCCHHHHHHGGGCTTEEEECCGGGG
T ss_pred             EECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhh-hccChHHHHHhhcCCCceeeeChHHh
Confidence                       5556553                    5 4999999988765 22321                   11


Q ss_pred             ------------------HHHHHHHHHh------CCCEEEeCceEEEEEecCCeEEEEEeec----c--------CCCCc
Q psy14927        951 ------------------AKQFQRILGK------QGMQFKLGTKVTGASKSGDNITVTIENV----K--------DPTKK  994 (1074)
Q Consensus       951 ------------------~~~~~~~l~~------~gV~i~~~~~v~~i~~~~~~~~v~~~~~----~--------~~g~~  994 (1074)
                                        .+.+.+.+.+      .||++++++.+.+|.+++....|++.+.    +        .+|+.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~g~~  310 (456)
T 1lqt_A          231 DGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKGKRKVERIVLGRNELVSDGSGRVAAKDTGER  310 (456)
T ss_dssp             TTCCHHHHHHHCHHHHHHHHHHHHHHTCC-CTTSEEEEEECSEEEEEEECSSSCCEEEEEEEEEEECSSSSEEEEEEEEE
T ss_pred             ccchhhhhhhccHHHHHHHHHHHHHhhcCCCCCCceEEEEeCCCCeEEecCCcEeEEEEEEEEecCCCcccccccCCCce
Confidence                              2334444555      7999999999999987643223444320    0        01334


Q ss_pred             eEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCC-CCCCCEEEecccCCCCC-cHHHHHHHHHHHHHHhhC
Q psy14927        995 EELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQ-TVIPNIFAIGDCIHGPM-LAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus       995 ~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~-ts~~~IyAiGD~~~~~~-~~~~A~~~G~~aA~~I~~ 1072 (1074)
                      ++++||+||+++|++|++ +     .|++++++|+|.+|++++ |+.|||||+|||+.+|. .+..|+.+|..+|.+|++
T Consensus       311 ~~i~~d~vi~a~G~~p~~-l-----~gl~~d~~g~i~vn~~~rvt~~pgvya~GD~~~gp~~~i~~a~~~g~~~a~~i~~  384 (456)
T 1lqt_A          311 EELPAQLVVRSVGYRGVP-T-----PGLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTLIK  384 (456)
T ss_dssp             EEEECSEEEECSCEECCC-C-----TTSCCBTTTTBCCEETTEETTCSSEEECTHHHHCSCSCTTHHHHHHHHHHHHHHH
T ss_pred             EEEEcCEEEEccccccCC-C-----CCCcccCCCCeeECCCCcCCCCCCEEEEeccCCCCchhHHHHHHHHHHHHHHHHH
Confidence            679999999999999988 2     367788889999999999 89999999999998776 466899999999999874

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=99.86  E-value=3.2e-22  Score=248.90  Aligned_cols=247  Identities=17%  Similarity=0.136  Sum_probs=185.1

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhC-CeEEEeeeEEEe
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSN-KVTQLNGHGKIT  867 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~-gV~~~~g~v~~i  867 (1074)
                      +++||||||||+|+++|+.|++     +++|+.+..|+.+......++.... ..+..++...+.+. ||+++.++..  
T Consensus       391 ~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~gv~~~~~~~v--  467 (690)
T 3k30_A          391 DARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQESALPGLSAW-GRVKEYREAVLAELPNVEIYRESPM--  467 (690)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHHHHTSTTCGGG-GHHHHHHHHHHHTCTTEEEESSCCC--
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeeeccCCCchhHH-HHHHHHHHHHHHHcCCCEEEECCee--
Confidence            5669999999999999999999     8999999998887665555544432 55666677778887 9999988421  


Q ss_pred             cCCeEEEEeCCCCeeEEEcCeEEEccCCCCC----------CCCCCCCCCcceechhhHhcchH----------------
Q psy14927        868 GPNTVTVIKSDGSTEEVKTKNILIATGSEVT----------PFPGIEVDEETIVSSTGALSLKK----------------  921 (1074)
Q Consensus       868 d~~~~~v~~~~G~~~~i~~d~lIIATG~~p~----------~ipgi~~~~~~v~t~~~~~~~~~----------------  921 (1074)
                             +..++  .++.||+||||||+.|.          ++||.  +...+++..+++....                
T Consensus       468 -------~~~~~--~~~~~d~lvlAtG~~~~~~~~~~~~~~~i~G~--~~~~v~~~~~~l~~~~~~g~~VvViG~ggG~~  536 (690)
T 3k30_A          468 -------TGDDI--VEFGFEHVITATGATWRTDGVARFHTTALPIA--EGMQVLGPDDLFAGRLPDGKKVVVYDDDHYYL  536 (690)
T ss_dssp             -------CHHHH--HHTTCCEEEECCCEEECSSCCSSSCSSCCCBC--TTSEEECHHHHHTTCCCSSSEEEEEECSCSSH
T ss_pred             -------cHHHH--hhcCCCEEEEcCCCccccccccccCCCCCCCC--CCCcEEcHHHHhCCCCCCCCEEEEEcCCCCcc
Confidence                   11222  35789999999999842          33443  2245677766554211                


Q ss_pred             ----hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEE
Q psy14927        922 ----GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEEL  997 (1074)
Q Consensus       922 ----A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i  997 (1074)
                          |..|.+.|.+||++++.+.++....++.....+.+.|++.||++++++.|++|++  +++.+....   +++++++
T Consensus       537 g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~~v~~~~---~~~~~~i  611 (690)
T 3k30_A          537 GGVVAELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVGA--GGVTVRDTY---ASIEREL  611 (690)
T ss_dssp             HHHHHHHHHHTTCEEEEEESSSSTTGGGGGGTCHHHHHHHHHHTTCEEEESEEEEEEET--TEEEEEETT---TCCEEEE
T ss_pred             HHHHHHHHHhCCCeeEEEecccccccccccchhHHHHHHHHHHCCCEEEcCcEEEEEEC--CeEEEEEcc---CCeEEEE
Confidence                7788889999999999988873223355677888999999999999999999986  444444322   3557789


Q ss_pred             EcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHhhCC
Q psy14927        998 SCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus       998 ~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      ++|.||+|+|++|++.++  ..++..    +.       +|++|+||++|||+..+ .+..|+.+|+.||.+|.+.
T Consensus       612 ~aD~VV~A~G~~p~~~l~--~~l~~~----~~-------~t~~~~VyaiGD~~~~~-~~~~A~~~g~~aa~~i~~~  673 (690)
T 3k30_A          612 ECDAVVMVTARLPREELY--LDLVAR----RD-------AGEIASVRGIGDAWAPG-TIAAAVWSGRRAAEEFDAV  673 (690)
T ss_dssp             ECSEEEEESCEEECCHHH--HHHHHH----HH-------HTSCSEEEECGGGTSCB-CHHHHHHHHHHHHHHTTCC
T ss_pred             ECCEEEECCCCCCChHHH--HHHhhh----hc-------ccCCCCEEEEeCCCchh-hHHHHHHHHHHHHHHHHhh
Confidence            999999999999999863  333222    11       78999999999999865 6677999999999999863

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=99.85  E-value=2.6e-21  Score=248.12  Aligned_cols=256  Identities=15%  Similarity=0.155  Sum_probs=180.8

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchh--hhhhhhhHHHhhhhhhHHHHhhhC-CeEEEee-eE
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLE--TMMGTKSAAVKALTGGIAHLFKSN-KVTQLNG-HG  864 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~--~~~~~~~~~~~~l~~~~~~~l~~~-gV~~~~g-~v  864 (1074)
                      +.+||||||||||++||..+++     +++|+.+..|+.+...  .......  ..++...+.+.+... +|+++.+ +|
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~~~~k~~i~~~~--~~~~~~~~~~~l~~~~~v~~~~~~~V  205 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLDTAGEQIDGMD--SSAWIEQVTSELAEAEETTHLQRTTV  205 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGGGSSCCEETTEE--HHHHHHHHHHHHHHSTTEEEESSEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceeccCCccccCCCC--HHHHHHHHHHHHhhcCCcEEEeCCEE
Confidence            4569999999999999999998     8999988888766521  1111111  123333444555554 9999998 57


Q ss_pred             EEecCCeEEEEe---------C------CCCeeEEEcCeEEEccCCCCC--CCCCCCCCCcceechhhH---hcc-----
Q psy14927        865 KITGPNTVTVIK---------S------DGSTEEVKTKNILIATGSEVT--PFPGIEVDEETIVSSTGA---LSL-----  919 (1074)
Q Consensus       865 ~~id~~~~~v~~---------~------~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~~~v~t~~~~---~~~-----  919 (1074)
                      +.++........         .      ++...++.||+||||||+.|.  ++||.+  .+.++++.++   +..     
T Consensus       206 ~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~~~ipG~~--~~gv~~~~~~~~~l~~~~~~~  283 (965)
T 2gag_A          206 FGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERPIVFENND--RPGIMLAGAVRSYLNRYGVRA  283 (965)
T ss_dssp             EEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECCCCCBTCC--STTEEEHHHHHHHHHTTCEES
T ss_pred             EeeecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCCCCCCCCC--CCCEEEhHHHHHHHHhcCCCC
Confidence            777654321111         0      121247999999999999764  345542  3456665433   211     


Q ss_pred             -hH-------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEe--cCCeEEE
Q psy14927        920 -KK-------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASK--SGDNITV  983 (1074)
Q Consensus       920 -~~-------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~--~~~~~~v  983 (1074)
                       +.             |..|.+.|.+||++++.+.++ +    .     .+.+++.||++++++.+.++.+  ++....|
T Consensus       284 gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~-~----~-----~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v  353 (965)
T 2gag_A          284 GARIAVATTNDSAYELVRELAATGGVVAVIDARSSIS-A----A-----AAQAVADGVQVISGSVVVDTEADENGELSAI  353 (965)
T ss_dssp             CSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCC-H----H-----HHHHHHTTCCEEETEEEEEEEECTTSCEEEE
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccc-h----h-----HHHHHhCCeEEEeCCEeEEEeccCCCCEEEE
Confidence             11             788889999999999988765 2    1     4678899999999999999987  3333356


Q ss_pred             EEeeccC---CCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCC-----CCCCCEEEecccCCCCCc
Q psy14927        984 TIENVKD---PTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQ-----TVIPNIFAIGDCIHGPML 1055 (1074)
Q Consensus       984 ~~~~~~~---~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~-----ts~~~IyAiGD~~~~~~~ 1055 (1074)
                      ++.+.+.   +|+++++++|.|++++|++|+++++  ..      .+|.|.+|++++     |+.|+|||+|||++.+.+
T Consensus       354 ~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~--~~------~~g~i~vd~~~~~~v~~ts~p~IyAaGD~a~~~~l  425 (965)
T 2gag_A          354 VVAELDEARELGGTQRFEADVLAVAGGFNPVVHLH--SQ------RQGKLDWDTTIHAFVPADAVANQHLAGAMTGRLDT  425 (965)
T ss_dssp             EEEEECTTCCEEEEEEEECSEEEEECCEEECCHHH--HH------TTCCEEEETTTTEEEECSCCTTEEECGGGGTCCSH
T ss_pred             EEEeccccCCCCceEEEEcCEEEECCCcCcChHHH--Hh------CCCcEEEcCcccccccCCCCCCEEEEEecCCchhH
Confidence            6553100   0334789999999999999999863  22      246788898877     899999999999987755


Q ss_pred             HHHHHHHHHHHHHHhhC
Q psy14927       1056 AHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus      1056 ~~~A~~~G~~aA~~I~~ 1072 (1074)
                       ..|..+|+.||.+|++
T Consensus       426 -~~A~~~G~~aA~~i~~  441 (965)
T 2gag_A          426 -ASALSTGAATGAAAAT  441 (965)
T ss_dssp             -HHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHH
Confidence             4899999999999974

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=99.85  E-value=3.3e-22  Score=249.77  Aligned_cols=251  Identities=17%  Similarity=0.134  Sum_probs=173.1

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhh------CCeEEEee
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKS------NKVTQLNG  862 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~------~gV~~~~g  862 (1074)
                      +++|+||||||||++||..|++     ++||+.+..|+.+.+....++.... ..+..++...+..      .+|++..+
T Consensus       389 ~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~~~~~pg~~~~-~~~~~~~~~~i~~~~~~~~~~v~i~~~  467 (729)
T 1o94_A          389 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEW-SYHRDYRETQITKLLKKNKESQLALGQ  467 (729)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGGG-HHHHHHHHHHHHHHHHHSTTCEEECSC
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeeecccCCChHHH-HHHHHHHHHHHHHhhcccCCceEEEeC
Confidence            5669999999999999999998     8999988888877654433332211 1222222222222      25665544


Q ss_pred             eEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCC----------CCCCCCCCCCcceechhhHhcchH-----------
Q psy14927        863 HGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEV----------TPFPGIEVDEETIVSSTGALSLKK-----------  921 (1074)
Q Consensus       863 ~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p----------~~ipgi~~~~~~v~t~~~~~~~~~-----------  921 (1074)
                      +         .++++++  .++.||+||||||+.|          +++||.......+++..+++....           
T Consensus       468 ~---------~v~~~~~--~~~~~d~vviAtG~~~~~~~~~~p~~~~ipG~~~~~~~v~~~~~~l~~~~~~gk~VvVIG~  536 (729)
T 1o94_A          468 K---------PMTADDV--LQYGADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNA  536 (729)
T ss_dssp             C---------CCCHHHH--HTSCCSEEEECCCEEECSSCCCTTTSSCCTTCCTTSTTEECHHHHHHCCSCCCSEEEEEEC
T ss_pred             e---------EEehhhc--cccCCCEEEEcCCCCcccccccCccCCCCCCccccCCCEEEHHHHhcCCCCCCCeEEEEcC
Confidence            2         2223333  3578999999999983          123443211346777777654221           


Q ss_pred             ---------hhHHhhcCCcEEEEecCCccCCC--CCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccC
Q psy14927        922 ---------GSVWGRLGAEVTAIEFMNAIGGM--GIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKD  990 (1074)
Q Consensus       922 ---------A~~l~~~G~~Vtlv~~~~~~~~~--~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~  990 (1074)
                               |..|.+.|.+||++++.+ ++ +  .++.. ...+.+.|++.||++++++.+++|.+  +++.++....++
T Consensus       537 GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~-~~~~~~~~-~~~~~~~l~~~GV~i~~~~~v~~i~~--~~v~~~~~~~~~  611 (729)
T 1o94_A          537 DTYFMAPSLAEKLATAGHEVTIVSGVH-LA-NYMHFTLE-YPNMMRRLHELHVEELGDHFCSRIEP--GRMEIYNIWGDG  611 (729)
T ss_dssp             CCSSHHHHHHHHHHHTTCEEEEEESSC-TT-HHHHHTTC-HHHHHHHHHHTTCEEECSEEEEEEET--TEEEEEETTCSC
T ss_pred             CCCchHHHHHHHHHHcCCEEEEEeccc-cc-cccccccc-HHHHHHHHHhCCCEEEcCcEEEEEEC--CeEEEEEecCCc
Confidence                     788889999999999988 54 2  12222 45677888999999999999999986  344443211000


Q ss_pred             ---------------CCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCc
Q psy14927        991 ---------------PTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPML 1055 (1074)
Q Consensus       991 ---------------~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~ 1055 (1074)
                                     .++..++++|.||+|+|++|+++++  ..++.        .+|++++|++|+|||+|||+. +..
T Consensus       612 ~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~l~--~~l~~--------~vd~~~~t~~~~VyAiGD~~~-~~~  680 (729)
T 1o94_A          612 SKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLW--NELKA--------RESEWAENDIKGIYLIGDAEA-PRL  680 (729)
T ss_dssp             SCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECCHHH--HHHHH--------TGGGTGGGTCCEEEECGGGTS-CCC
T ss_pred             eEEecccccccccccCCcceeeeCCEEEECCCCCCChHHH--HHHhh--------hcccccccCCCCeEEEeCccc-hhh
Confidence                           0123359999999999999999863  33321        267889999999999999987 557


Q ss_pred             HHHHHHHHHHHHHHhhC
Q psy14927       1056 AHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus      1056 ~~~A~~~G~~aA~~I~~ 1072 (1074)
                      +..|+.+|+.||.+|.+
T Consensus       681 ~~~A~~~G~~aA~~i~~  697 (729)
T 1o94_A          681 IADATFTGHRVAREIEE  697 (729)
T ss_dssp             HHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHHHhhh
Confidence            88899999999999975

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.85  E-value=2.1e-18  Score=216.62  Aligned_cols=228  Identities=15%  Similarity=0.163  Sum_probs=196.9

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccchhhhHhh---hcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhh
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQHVPRMLL---ENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLS   81 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~   81 (1074)
                      -++++|+++||+.+|+|++.++ ++...++   ++|+++.++..+.++|.+|-++|++++..|++++|+.+|.+|+|+.+
T Consensus      1058 Iai~lglyEEAf~IYkKa~~~~-~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKAdD~sa 1136 (1630)
T 1xi4_A         1058 IAISNELFEEAFAIFRKFDVNT-SAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSS 1136 (1630)
T ss_pred             HHHhCCCHHHHHHHHHHcCCHH-HHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhcCChHH
Confidence            4688999999999999999888 5555554   69999999999999999999999999999999999999999977766


Q ss_pred             hhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHhCChH--------HHHHHHHHhCchHHHHHH
Q psy14927         82 MVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCG--------NAVRLCKEQALDDQLWNL  153 (1074)
Q Consensus        82 ~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~--------~A~~la~~~~~~~~~~~l  153 (1074)
                      .++                          +|..|++.|++++||+||.++.+.+        .|+.+|+. ++++++...
T Consensus      1137 y~e--------------------------Va~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl-~rleele~f 1189 (1630)
T 1xi4_A         1137 YME--------------------------VVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKT-NRLAELEEF 1189 (1630)
T ss_pred             HHH--------------------------HHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhh-cCHHHHHHH
Confidence            555                          8999999999999999999999887        88999998 778887776


Q ss_pred             hhhcCchhHHHHHHHHcc-CChhHHHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcch
Q psy14927        154 ALSAGPSEQIEAATYLET-IEPDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRM  232 (1074)
Q Consensus       154 ~~~~~~~~~~~~A~~~e~-~~~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~  232 (1074)
                      ........+..+|++|++ +++++|+.+|.+|+.+.++..++.+                    .|+.+.+|+.+..+++
T Consensus      1190 I~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvk--------------------Lge~q~AIEaarKA~n 1249 (1630)
T 1xi4_A         1190 INGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVH--------------------LGEYQAAVDGARKANS 1249 (1630)
T ss_pred             HhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHH--------------------hCCHHHHHHHHHHhCC
Confidence            655556778889999998 7899999999999988888888877                    7889999999999999


Q ss_pred             HHHH-------------HHHHHHHhcCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHhHH
Q psy14927        233 KEIY-------------VMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSCAQVE  282 (1074)
Q Consensus       233 ~~l~-------------~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~a~~e  282 (1074)
                      .+.|             .+|..+..+  ...+|+.+..++.+|.+.|.|++|.+.++..-..|
T Consensus      1250 ~~aWkev~~acve~~Ef~LA~~cgl~--Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le 1310 (1630)
T 1xi4_A         1250 TRTWKEVCFACVDGKEFRLAQMCGLH--IVVHADELEELINYYQDRGYFEELITMLEAALGLE 1310 (1630)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHh--hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence            8884             345555543  46678999999999999999999999987775555

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.85  E-value=4.9e-21  Score=227.23  Aligned_cols=250  Identities=15%  Similarity=0.087  Sum_probs=174.2

Q ss_pred             hhhhhccccchHHHHHHHhh-----------hhhhhccccccccchhhh-----------------------------hh
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----------KLFTQAGDKGVKLNLETM-----------------------------MG  835 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----------~l~e~~~~~g~~~~~~~~-----------------------------~~  835 (1074)
                      +|+||||||+|+++|..|++           ++||+.+..|+.+.+...                             +.
T Consensus         4 ~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~~   83 (464)
T 2xve_A            4 RIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFAD   83 (464)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBTT
T ss_pred             cEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccCC
Confidence            49999999999999999986           266777666665432100                             00


Q ss_pred             h--h---------hHHHhhhhhhHHHHhhhCCeE--EEee-eEEEecC--C--eEEEEeCC---CCeeEEEcCeEEEccC
Q psy14927        836 T--K---------SAAVKALTGGIAHLFKSNKVT--QLNG-HGKITGP--N--TVTVIKSD---GSTEEVKTKNILIATG  894 (1074)
Q Consensus       836 ~--~---------~~~~~~l~~~~~~~l~~~gV~--~~~g-~v~~id~--~--~~~v~~~~---G~~~~i~~d~lIIATG  894 (1074)
                      .  .         ......+..++...+.+.|++  ++++ +|+.++.  +  .+.|++.+   |...++.||+||||||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAtG  163 (464)
T 2xve_A           84 YTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCTG  163 (464)
T ss_dssp             BCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECCC
T ss_pred             CCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECCC
Confidence            0  0         001134455566777777887  7777 5777753  2  45666644   4335799999999999


Q ss_pred             --CCCC--CCCCCCCCCcceechhhHhcchH------------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHH
Q psy14927        895 --SEVT--PFPGIEVDEETIVSSTGALSLKK------------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAK  952 (1074)
Q Consensus       895 --~~p~--~ipgi~~~~~~v~t~~~~~~~~~------------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~  952 (1074)
                        +.|.  .+||++.....++++.++.....                  |..|.+.|++||++++++.++...+      
T Consensus       164 ~~s~p~~p~ipG~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~~~~~~------  237 (464)
T 2xve_A          164 HFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGYKW------  237 (464)
T ss_dssp             SSSSBCCCCCBTTTTCCSEEEEGGGCCCGGGGTTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCCCCCCC------
T ss_pred             CCCCCccCCCCCcccCCceEEehhhhCCHhHcCCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCCCCCCC------
Confidence              6663  34454322223555554443221                  8888899999999999988763222      


Q ss_pred             HHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeee
Q psy14927        953 QFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPV 1032 (1074)
Q Consensus       953 ~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~V 1032 (1074)
                             ..||+++  ..|+++++  ++  |.+.+      ++++++|.||+|||++|+++++. ..+|+.++++|+| +
T Consensus       238 -------~~~V~~~--~~V~~i~~--~~--V~~~d------G~~i~~D~Vi~atG~~p~~~~l~-~~~gl~~~~~~~v-~  296 (464)
T 2xve_A          238 -------PENWDER--PNLVRVDT--EN--AYFAD------GSSEKVDAIILCTGYIHHFPFLN-DDLRLVTNNRLWP-L  296 (464)
T ss_dssp             -------CTTEEEC--SCEEEECS--SE--EEETT------SCEEECSEEEECCCBCCCCTTBC-TTTCCCCCSSSCC-S
T ss_pred             -------CCceEEc--CCeEEEeC--CE--EEECC------CCEEeCCEEEECCCCCCCCCCcC-cccccccCCCccc-c
Confidence                   2478887  67888864  33  55554      34789999999999999999853 3468888777676 3


Q ss_pred             C---CCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHhhCC
Q psy14927       1033 N---SRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1033 d---~~~~ts~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      +   ..++|+.|+||++||+...+ ....|..||+.+|.+|.|.
T Consensus       297 ~~~~~~~~t~~p~i~aiGd~~~~~-~~~~a~~qa~~~a~~l~G~  339 (464)
T 2xve_A          297 NLYKGVVWEDNPKFFYIGMQDQWY-SFNMFDAQAWYARDVIMGR  339 (464)
T ss_dssp             SEETTTEESSSTTEEECSCSCCSS-CHHHHHHHHHHHHHHHTTS
T ss_pred             cccceEecCCCCCEEEEeCccccc-chHHHHHHHHHHHHHHcCC
Confidence            4   33568999999999988754 7899999999999999874

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.83  E-value=2e-21  Score=232.32  Aligned_cols=253  Identities=16%  Similarity=0.099  Sum_probs=175.1

Q ss_pred             chhhhhhccccchHHHHHHHhh----hhhhhccccccccchhhhh-hhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEe
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT----KLFTQAGDKGVKLNLETMM-GTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKIT  867 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~----~l~e~~~~~g~~~~~~~~~-~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~i  867 (1074)
                      +.+||||||||+|+++|++|++    +++|+.+..|+.+...... .+......++...+.+.+ ..||+++.+ +|+.+
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l-~~~v~~~~~~~v~~i  186 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQYLTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKL-NENTKIYLETSALGV  186 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTTCCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTC-CTTEEEETTEEECCC
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHH-hcCCEEEcCCEEEEE
Confidence            4469999999999999999987    7888888777765432110 000001233444444555 679999887 46555


Q ss_pred             cCC--eEEEEe-CCCCeeEEEcCeEEEccCCCCC--CCCCCCCCCcceechhhHhcchHhhHHhhcCCcEEEEecCCccC
Q psy14927        868 GPN--TVTVIK-SDGSTEEVKTKNILIATGSEVT--PFPGIEVDEETIVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIG  942 (1074)
Q Consensus       868 d~~--~~~v~~-~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~~~v~t~~~~~~~~~A~~l~~~G~~Vtlv~~~~~~~  942 (1074)
                      +.+  .+.+.. +++...++.||+||||||+.|.  ++|+.  +...+++..++..+.+... ...+.+|.++..+..  
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~~~~g~--~~~gv~~~~~~~~~~~~~~-~~~~~~vvViGgG~~--  261 (493)
T 1y56_A          187 FDKGEYFLVPVVRGDKLIEILAKRVVLATGAIDSTMLFENN--DMPGVFRRDFALEVMNVWE-VAPGRKVAVTGSKAD--  261 (493)
T ss_dssp             EECSSSEEEEEEETTEEEEEEESCEEECCCEEECCCCCTTT--TSTTEEEHHHHHHHHHTSC-BCSCSEEEEESTTHH--
T ss_pred             EcCCcEEEEEEecCCeEEEEECCEEEECCCCCccCCCCCCC--CCCCEEEcHHHHHHHHhcc-cCCCCEEEEECCCHH--
Confidence            543  233333 4453347999999999999874  34444  2345777666543221100 123567777732211  


Q ss_pred             CCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCc
Q psy14927        943 GMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGI 1022 (1074)
Q Consensus       943 ~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl 1022 (1074)
                                .+.+.+++.||++++++.|.++.++++...+.+.+      +.++++|.||+++|.+|++++  +..+|+
T Consensus       262 ----------gle~~l~~~GV~v~~~~~v~~i~~~~~v~~v~~~~------g~~i~aD~Vv~a~G~~p~~~l--~~~~g~  323 (493)
T 1y56_A          262 ----------EVIQELERWGIDYVHIPNVKRVEGNEKVERVIDMN------NHEYKVDALIFADGRRPDINP--ITQAGG  323 (493)
T ss_dssp             ----------HHHHHHHHHTCEEEECSSEEEEECSSSCCEEEETT------CCEEECSEEEECCCEEECCHH--HHHTTC
T ss_pred             ----------HHHHHHHhCCcEEEeCCeeEEEecCCceEEEEeCC------CeEEEeCEEEECCCcCcCchH--HHhcCC
Confidence                      12267788999999999999998765444454332      468999999999999999987  566666


Q ss_pred             c--cCCCCCee-eCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHhhC
Q psy14927       1023 E--KDEKGRVP-VNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus      1023 ~--ld~~G~I~-Vd~~~~ts~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I~~ 1072 (1074)
                      +  ++++|+|. ||++++ +.|+||++|||+..+ .+..|..+|++||.+|++
T Consensus       324 ~~~~~~~g~i~~vd~~~~-s~~~vya~GD~~~~~-~~~~A~~~g~~aa~~i~~  374 (493)
T 1y56_A          324 KLRFRRGYYSPVLDEYHR-IKDGIYVAGSAVSIK-PHYANYLEGKLVGAYILK  374 (493)
T ss_dssp             CEEEETTEEEECCCTTSE-EETTEEECSTTTCCC-CHHHHHHHHHHHHHHHHH
T ss_pred             CccccCCceeeccccccC-cCCCEEEEeccCCcc-CHHHHHHHHHHHHHHHHH
Confidence            5  46789887 899999 999999999999865 788999999999999874

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=99.82  E-value=1.7e-20  Score=232.91  Aligned_cols=235  Identities=17%  Similarity=0.220  Sum_probs=174.8

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEec
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITG  868 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id  868 (1074)
                      +++||||||||||++||..|++     +++|+.+..|+.+.+....+..... ..+..++...+.+.||+++.++.+.. 
T Consensus       373 ~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~~~~~~~~~~~-~~~~~~~~~~~~~~gv~~~~~~~v~~-  450 (671)
T 1ps9_A          373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEF-YETLRYYRRMIEVTGVTLKLNHTVTA-  450 (671)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTH-HHHHHHHHHHHHHHTCEEEESCCCCS-
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeeccccCCCHHHH-HHHHHHHHHHHHHcCCEEEeCcEecH-
Confidence            5569999999999999999998     8999988888887665554444332 34444567778888999999853211 


Q ss_pred             CCeEEEEeCCCCeeEE-EcCeEEEccCCCCC--CCCCCCCCCcceechhhHhcchH------------------hhHHhh
Q psy14927        869 PNTVTVIKSDGSTEEV-KTKNILIATGSEVT--PFPGIEVDEETIVSSTGALSLKK------------------GSVWGR  927 (1074)
Q Consensus       869 ~~~~~v~~~~G~~~~i-~~d~lIIATG~~p~--~ipgi~~~~~~v~t~~~~~~~~~------------------A~~l~~  927 (1074)
                                   ..+ .||+||||||++|.  ++||.  +...+++..+++....                  |..|.+
T Consensus       451 -------------~~~~~~d~lviAtG~~p~~~~i~G~--~~~~v~~~~~~l~~~~~~~~~VvVIGgG~~g~E~A~~l~~  515 (671)
T 1ps9_A          451 -------------DQLQAFDETILASGIVPRTPPIDGI--DHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQ  515 (671)
T ss_dssp             -------------SSSCCSSEEEECCCEEECCCCCBTT--TSTTEEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTC
T ss_pred             -------------HHhhcCCEEEEccCCCcCCCCCCCC--CCCcEeeHHHHhhCCCCCCCeEEEECCChhHHHHHHHHHh
Confidence                         124 79999999999874  33443  2245777777654321                  667776


Q ss_pred             cC-------------------------------------CcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCce
Q psy14927        928 LG-------------------------------------AEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTK  970 (1074)
Q Consensus       928 ~G-------------------------------------~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~  970 (1074)
                      .|                                     .+|+++++.+..+.+.+++.....+.+.|++.||++++++.
T Consensus       516 ~G~~vtv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~~~l~~~~~~~~~~~l~~~GV~v~~~~~  595 (671)
T 1ps9_A          516 PGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVS  595 (671)
T ss_dssp             CSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCE
T ss_pred             cCCCcccchhhhhhhhcccccccccccccccccccCCCCcEEEEEEecchhhccccccccHHHHHHHHHhcCCEEEeCcE
Confidence            66                                     35678877776665567777788888999999999999999


Q ss_pred             EEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccC
Q psy14927        971 VTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCI 1050 (1074)
Q Consensus       971 v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~ 1050 (1074)
                      ++++++  +++.++ .    +|+.+++++|.||+++|++|+++++  ..+    +            +..++||++|||+
T Consensus       596 v~~i~~--~~v~~~-~----~G~~~~i~~D~Vi~a~G~~p~~~l~--~~l----~------------~~g~~v~aiGD~~  650 (671)
T 1ps9_A          596 YQKIDD--DGLHVV-I----NGETQVLAVDNVVICAGQEPNRALA--QPL----I------------DSGKTVHLIGGCD  650 (671)
T ss_dssp             EEEEET--TEEEEE-E----TTEEEEECCSEEEECCCEEECCTTH--HHH----H------------TTTCCEEECGGGT
T ss_pred             EEEEeC--CeEEEe-c----CCeEEEEeCCEEEECCCccccHHHH--HHH----H------------hcCCCEEEECCcC
Confidence            999985  444443 3    3555789999999999999999873  221    1            1236899999998


Q ss_pred             CCC-CcHHHHHHHHHHHHHHh
Q psy14927       1051 HGP-MLAHKAEDEGIVCVEGI 1070 (1074)
Q Consensus      1051 ~~~-~~~~~A~~~G~~aA~~I 1070 (1074)
                      ..+ ..+..|+.+|..+|.||
T Consensus       651 ~~~~~~~~~A~~~g~~aA~~i  671 (671)
T 1ps9_A          651 VAMELDARRAIAQGTRLALEI  671 (671)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHC
T ss_pred             ccCchhHHHHHHHHHHHHHhC
Confidence            754 36899999999999986

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.82  E-value=6.7e-20  Score=217.94  Aligned_cols=271  Identities=10%  Similarity=0.059  Sum_probs=173.8

Q ss_pred             chhhhhhccccchHHHHHHHhh----------hhhhhcccccccc---------------------------chhhhhhh
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT----------KLFTQAGDKGVKL---------------------------NLETMMGT  836 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~----------~l~e~~~~~g~~~---------------------------~~~~~~~~  836 (1074)
                      ..+||||||||+|+++|..|++          +++|+.+..|...                           .+......
T Consensus        30 ~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~~  109 (463)
T 3s5w_A           30 VHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYLHK  109 (463)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhhhh
Confidence            3459999999999999999977          2555655433111                           00000000


Q ss_pred             hh------------HHHhhhhhhHHHHhhhCCeEEEee-eEEEecCC----e---EEEEeCCC--CeeEEEcCeEEEccC
Q psy14927        837 KS------------AAVKALTGGIAHLFKSNKVTQLNG-HGKITGPN----T---VTVIKSDG--STEEVKTKNILIATG  894 (1074)
Q Consensus       837 ~~------------~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id~~----~---~~v~~~~G--~~~~i~~d~lIIATG  894 (1074)
                      ..            .....+..++.......+++++++ +|+.++..    .   +.|++.+|  ...++.||+||||||
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG  189 (463)
T 3s5w_A          110 HDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPG  189 (463)
T ss_dssp             TTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECCC
T ss_pred             cCceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECCC
Confidence            00            001233344555566778999998 47777643    2   36666554  223799999999999


Q ss_pred             CCCCCCCCCCCC-Cc-ceechhhH----hcch----H----------------hhHHhhc--CCcEEEEecCCccCCC--
Q psy14927        895 SEVTPFPGIEVD-EE-TIVSSTGA----LSLK----K----------------GSVWGRL--GAEVTAIEFMNAIGGM--  944 (1074)
Q Consensus       895 ~~p~~ipgi~~~-~~-~v~t~~~~----~~~~----~----------------A~~l~~~--G~~Vtlv~~~~~~~~~--  944 (1074)
                      +.|..+++++.. .. .++++.++    ..+.    .                |..|.+.  |.+||+++|++.+++.  
T Consensus       190 ~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p~~~  269 (463)
T 3s5w_A          190 GTPRIPQVFRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKPADD  269 (463)
T ss_dssp             CEECCCGGGGGGTTCTTEEEGGGHHHHHCC-------CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCBCCC
T ss_pred             CCCCCcchhhhcCCCCcEEECHHHHhhHHHhhhcccCCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcCccC
Confidence            987422223221 21 34433332    2221    1                7777777  8899999999987521  


Q ss_pred             -----------------CCCHHHHHHHHHHHHh--------------------------CCCEEEeCceEEEEEecCCeE
Q psy14927        945 -----------------GIDGEVAKQFQRILGK--------------------------QGMQFKLGTKVTGASKSGDNI  981 (1074)
Q Consensus       945 -----------------~~~~~~~~~~~~~l~~--------------------------~gV~i~~~~~v~~i~~~~~~~  981 (1074)
                                       .+++..+..+.+.+..                          .||++++++.|+++..+++++
T Consensus       270 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~~~~  349 (463)
T 3s5w_A          270 SPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATAQGI  349 (463)
T ss_dssp             CHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEETTEE
T ss_pred             CccchhccChhHHHHHhcCCHHHHHHHHHHhhccCCCcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecCCEE
Confidence                             1223333333333332                          699999999999999888888


Q ss_pred             EEEEeeccCCCCceEEEcCEEEEccCCccc--CCccCccccCcccCCCCCeeeCCCCCCC-----CCCEEEecccCC---
Q psy14927        982 TVTIENVKDPTKKEELSCDALLVCVGRRPY--THNLGLEEIGIEKDEKGRVPVNSRFQTV-----IPNIFAIGDCIH--- 1051 (1074)
Q Consensus       982 ~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~--~~~l~l~~~gl~ld~~G~I~Vd~~~~ts-----~~~IyAiGD~~~--- 1051 (1074)
                      .|++.+.. +|+..++++|.||+|||++|+  +++  +..++..+   |.|.||+++++.     .|+||++|||..   
T Consensus       350 ~v~~~~~~-~g~~~~~~~D~Vv~AtG~~p~~~~~~--l~~l~~~~---g~i~v~~~~~~~~~~~~~~~Ifa~G~~~~~~g  423 (463)
T 3s5w_A          350 ELALRDAG-SGELSVETYDAVILATGYERQLHRQL--LEPLAEYL---GDHEIGRDYRLQTDERCKVAIYAQGFSQASHG  423 (463)
T ss_dssp             EEEEEETT-TCCEEEEEESEEEECCCEECCC-CTT--TGGGGGGB---C--CCCTTSBCCBCTTBCSEEEESSCCHHHHC
T ss_pred             EEEEEEcC-CCCeEEEECCEEEEeeCCCCCCccch--hHHHHHHh---CCcccCcccccccCCCCCCeEEEcCCCcccCC
Confidence            88887643 465667999999999999999  555  34443333   789999998864     567999999975   


Q ss_pred             --CCCcHHHHHHHHHHHHHHh
Q psy14927       1052 --GPMLAHKAEDEGIVCVEGI 1070 (1074)
Q Consensus      1052 --~~~~~~~A~~~G~~aA~~I 1070 (1074)
                        .|.+...|.+++.+++..+
T Consensus       424 ~~~~~l~~~a~r~~~i~~~~~  444 (463)
T 3s5w_A          424 LSDTLLSVLPVRAEEISGSLY  444 (463)
T ss_dssp             TTTTSSTTHHHHHHHHHHHHH
T ss_pred             cCccchhHHHHHHHHHHHHHH
Confidence              2557778888888876554

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.78  E-value=5.2e-19  Score=209.20  Aligned_cols=252  Identities=11%  Similarity=0.020  Sum_probs=167.0

Q ss_pred             hhhhhhccccchHHHHHHHhh-------hhhhhccccccccchhhhhh--------------------------------
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVKLNLETMMG--------------------------------  835 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~~~~~~~~~--------------------------------  835 (1074)
                      ++|+||||||+|+++|..|++       ++||+.+..|+.+.......                                
T Consensus         7 ~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~~~~   86 (447)
T 2gv8_A            7 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLYR   86 (447)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCCT
T ss_pred             CEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCchhh
Confidence            459999999999999999987       68888776666543321000                                


Q ss_pred             --------hhh--------------HHHhhhhhhHHHHhhhCCeEEEee-eEEEecC--CeEEEEeCC---CC-eeEEEc
Q psy14927        836 --------TKS--------------AAVKALTGGIAHLFKSNKVTQLNG-HGKITGP--NTVTVIKSD---GS-TEEVKT  886 (1074)
Q Consensus       836 --------~~~--------------~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id~--~~~~v~~~~---G~-~~~i~~  886 (1074)
                              ...              .....+..++...+...++.++++ +|+.++.  +.+.|++.+   |. ..++.|
T Consensus        87 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~~~~~~  166 (447)
T 2gv8_A           87 DLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIF  166 (447)
T ss_dssp             TCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEEEEE
T ss_pred             hhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCeeEEEEe
Confidence                    000              001233444555555667777777 5776653  446676654   63 337999


Q ss_pred             CeEEEccCC--CCCCCCCCCCCC-------cceechhhHhcchH------------------hhHHhhcCCc-EEEEecC
Q psy14927        887 KNILIATGS--EVTPFPGIEVDE-------ETIVSSTGALSLKK------------------GSVWGRLGAE-VTAIEFM  938 (1074)
Q Consensus       887 d~lIIATG~--~p~~ipgi~~~~-------~~v~t~~~~~~~~~------------------A~~l~~~G~~-Vtlv~~~  938 (1074)
                      |+||+|||.  .| .+|.+++..       ..++++.++.....                  |..|.+.|.+ ||+++|+
T Consensus       167 d~VVvAtG~~s~p-~~p~i~G~~~~~~~~~g~v~~~~~~~~~~~~~~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~  245 (447)
T 2gv8_A          167 DAVSICNGHYEVP-YIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG  245 (447)
T ss_dssp             SEEEECCCSSSSB-CBCCCBTHHHHHHHSTTSEEEGGGCCCGGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             CEEEECCCCCCCC-CCCCCCChhhhhccCCccEEEecccCChhhcCCCEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCC
Confidence            999999999  44 234443322       12555444332211                  7888888998 9999988


Q ss_pred             CccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccC--
Q psy14927        939 NAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLG-- 1016 (1074)
Q Consensus       939 ~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~-- 1016 (1074)
                      +.+                +...||.+  +..|+++.++++  .|.+.+    |+ .++++|.||+|||++|++++++  
T Consensus       246 ~~~----------------l~~~~i~~--~~~v~~~~~~~~--~v~~~d----G~-~~~~~D~vi~atG~~~~~~~l~~~  300 (447)
T 2gv8_A          246 GGD----------------IQNESLQQ--VPEITKFDPTTR--EIYLKG----GK-VLSNIDRVIYCTGYLYSVPFPSLA  300 (447)
T ss_dssp             CCS----------------CBCSSEEE--ECCEEEEETTTT--EEEETT----TE-EECCCSEEEECCCBCCCCCCHHHH
T ss_pred             CCc----------------CCCCCeEE--ecCeEEEecCCC--EEEECC----CC-EeccCCEEEECCCCCcCCCCCccc
Confidence            755                34567775  467888875443  455554    32 3479999999999999999821  


Q ss_pred             -ccccCcccCCCCCeeeCCCCC---CCCCCEEEecccCCCCCcHHHHHHHHHHHHHHhhCC
Q psy14927       1017 -LEEIGIEKDEKGRVPVNSRFQ---TVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1017 -l~~~gl~ld~~G~I~Vd~~~~---ts~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                       +..++..+..++.+.++.+.+   ++.|+||++||+...+ ....|..||+.+|.+|.|.
T Consensus       301 ~l~~~~~~i~~~~~~~~~~~~~v~~~~~p~l~~~G~~~~~~-~~~~a~~qa~~~a~~~~g~  360 (447)
T 2gv8_A          301 KLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVV-PFPTSQAQAAFLARVWSGR  360 (447)
T ss_dssp             SCCSTTTCCCSSSSSCCSEETTTEETTCTTEEESSCCBSSC-HHHHHHHHHHHHHHHHTTS
T ss_pred             ccccccCceecCCCcccccccccccCCCCcEEEEecccccc-CchHHHHHHHHHHHHHcCC
Confidence             222222222345566665555   7899999999998765 7889999999999999874

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.72  E-value=7e-16  Score=194.01  Aligned_cols=252  Identities=16%  Similarity=0.231  Sum_probs=192.0

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccc---------------hhhhHh-----------------h-----hcHHHHHHHhhcC
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQ---------------HVPRML-----------------L-----ENTDKLEKYIIQS   47 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~---------------~~~~~~-----------------~-----~~~~~~~~~~~~~   47 (1074)
                      -+++.|+++||+..|++++.++.               +++++|                 +     +++..++.|+...
T Consensus      1114 Aql~~G~~kEAIdsYiKAdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~ 1193 (1630)
T 1xi4_A         1114 AQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGP 1193 (1630)
T ss_pred             HHHhCCCHHHHHHHHHhcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCC
Confidence            35677888888888888776665               455544                 1     4567889998777


Q ss_pred             CChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHH------------HHHHHHH
Q psy14927         48 KDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAA------------YHLARQY  115 (1074)
Q Consensus        48 ~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~------------~~la~~~  115 (1074)
                      +.+.+. .||+++++.|+|++|..+|.++++|.+++++|+++|++++|.+.++++++..+.            +++|+.|
T Consensus      1194 n~ad~~-~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~c 1272 (1630)
T 1xi4_A         1194 NNAHIQ-QVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMC 1272 (1630)
T ss_pred             CHHHHH-HHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHH
Confidence            766666 599999999999999999999999999999999999999999999999888773            4677776


Q ss_pred             H-----hcCChHHHHHHHHHhCChHHHHHHHHHh--------CchHHHHHHhhhcCchhHHHHHHHHcc-CC--------
Q psy14927        116 E-----NSGQFDEAIHFYSVAGSCGNAVRLCKEQ--------ALDDQLWNLALSAGPSEQIEAATYLET-IE--------  173 (1074)
Q Consensus       116 ~-----~~g~~~~Ai~~y~~a~~~~~A~~la~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~e~-~~--------  173 (1074)
                      .     ..+.+++++.+|...|.|++||++++.-        ++++++..+.....|+.+.+..++|++ .+        
T Consensus      1273 gl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~ 1352 (1630)
T 1xi4_A         1273 GLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAA 1352 (1630)
T ss_pred             HHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHH
Confidence            6     3446789999999999999999999433        288888888888999999999999988 56        


Q ss_pred             -----hhHHHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcCCC
Q psy14927        174 -----PDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDW  248 (1074)
Q Consensus       174 -----~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~~~  248 (1074)
                           +.+++.||++.|++.+|+...++....    +|            +.+..........+.+||.+|++|+...  
T Consensus      1353 e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~----a~------------~~~~Fk~~i~kv~n~elyykai~Fyl~~-- 1414 (1630)
T 1xi4_A         1353 EQAHLWAELVFLYDKYEEYDNAIITMMNHPTD----AW------------KEGQFKDIITKVANVELYYRAIQFYLEF-- 1414 (1630)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHhccHh----hh------------hhHHHHHHhcccccHHHHHHHHHHHHhh--
Confidence                 789999999999999999666653200    00            0011122334456789999999998754  


Q ss_pred             CCChh-------------HHHHHHHHHHccCCHHHHHHHHHH
Q psy14927        249 KSQPE-------------LLKSIISFYSKGKAPHLLANFYVS  277 (1074)
Q Consensus       249 ~~~~~-------------~~~~i~~~Y~k~~~~~~aa~~~~~  277 (1074)
                        .|.             +..+.++++.|.+..--+-.|...
T Consensus      1415 --~P~~lndLl~~l~~rlD~~R~V~l~~~~~~l~lik~yl~~ 1454 (1630)
T 1xi4_A         1415 --KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRS 1454 (1630)
T ss_pred             --ChHHHHHHHHHhhhcCChHHHHHHHHHcCChHHhHHHHHH
Confidence              122             345667777766665554444443

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.65  E-value=2.5e-16  Score=189.66  Aligned_cols=266  Identities=13%  Similarity=0.088  Sum_probs=165.3

Q ss_pred             chhhhhhccccchHHHHHHHh-h-----hhhhhccccccccchhhhhhh-------------------------hhHHHh
Q psy14927        794 RQVVLNTLGNCAAVQANYHLA-T-----KLFTQAGDKGVKLNLETMMGT-------------------------KSAAVK  842 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la-~-----~l~e~~~~~g~~~~~~~~~~~-------------------------~~~~~~  842 (1074)
                      +.+|||||||++|+.+|..|+ +     +++|+.+..|+.+.....+..                         ......
T Consensus         8 ~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~   87 (540)
T 3gwf_A            8 TVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQP   87 (540)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHH
Confidence            345999999999999999999 5     899998877765433211110                         000123


Q ss_pred             hhhhhHHHHhhhCCe--EEEee-eEEEecC----CeEEEEeCCCCeeEEEcCeEEEccCC--CC--CCCCCCCCCCccee
Q psy14927        843 ALTGGIAHLFKSNKV--TQLNG-HGKITGP----NTVTVIKSDGSTEEVKTKNILIATGS--EV--TPFPGIEVDEETIV  911 (1074)
Q Consensus       843 ~l~~~~~~~l~~~gV--~~~~g-~v~~id~----~~~~v~~~~G~~~~i~~d~lIIATG~--~p--~~ipgi~~~~~~v~  911 (1074)
                      ++..++...+.+.|+  +++++ +|+.++.    ..+.|++.+|  .++.||+||+|||.  .|  +++||++.....++
T Consensus        88 ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G--~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~~  165 (540)
T 3gwf_A           88 EILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHG--EVYRAKYVVNAVGLLSAINFPNLPGLDTFEGETI  165 (540)
T ss_dssp             HHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTS--CEEEEEEEEECCCSCCSBCCCCCTTGGGCCSEEE
T ss_pred             HHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCC--CEEEeCEEEECCcccccCCCCCCCCccccCCCEE
Confidence            455566777778888  78877 5666642    3668888888  57999999999994  55  24555432222333


Q ss_pred             chhhHhc---c-hH--------------hhHHhhcCCcEEEEecCCccCCCCCC----HHHHHHHH--------------
Q psy14927        912 SSTGALS---L-KK--------------GSVWGRLGAEVTAIEFMNAIGGMGID----GEVAKQFQ--------------  955 (1074)
Q Consensus       912 t~~~~~~---~-~~--------------A~~l~~~G~~Vtlv~~~~~~~~~~~~----~~~~~~~~--------------  955 (1074)
                      ++.....   . .+              |..|.+.|.+||+++|++....|..+    +.....+.              
T Consensus       166 ~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  245 (540)
T 3gwf_A          166 HTAAWPEGKSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPVNPEQIAEIKADYDRIWERAKNSA  245 (540)
T ss_dssp             EGGGCCSSCCCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEECCCCBCCHHHHHHHHHTHHHHHHHHHTSS
T ss_pred             EeecCCCccccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCccCCCCHHHHHHHHhccHHHHHHHHhcc
Confidence            2222111   1 11              77788889999999999883223333    22222211              


Q ss_pred             -----------------------------------------------------------H--------------------
Q psy14927        956 -----------------------------------------------------------R--------------------  956 (1074)
Q Consensus       956 -----------------------------------------------------------~--------------------  956 (1074)
                                                                                 +                    
T Consensus       246 ~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dp~~~~~l~P~~~  325 (540)
T 3gwf_A          246 VAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAASFIRAKVAEIIEDPETARKLMPKGL  325 (540)
T ss_dssp             SCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHHHTSCSCTTTCHHHHHHHHHHHHHHHHHHCCSHHHHHHHCCCSC
T ss_pred             ccccccccchhhhhCCHHHHHHHHHHHHhcccchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHHhCCCCCC
Confidence                                                                       0                    


Q ss_pred             -------------HHHhCCCEEEe--CceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccC---cc
Q psy14927        957 -------------ILGKQGMQFKL--GTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLG---LE 1018 (1074)
Q Consensus       957 -------------~l~~~gV~i~~--~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~---l~ 1018 (1074)
                                   .+.+.+|+++.  +..|++|+++  +  |.+.+      ++++++|.||+|||+.+++.++.   +.
T Consensus       326 g~kR~~~~~~y~~~l~~~nV~lv~~~~~~I~~it~~--g--v~~~d------G~~~~~DvIV~ATGf~~~~~~~~~~~i~  395 (540)
T 3gwf_A          326 FAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTAK--G--VVTED------GVLHELDVLVFATGFDAVDGNYRRIEIR  395 (540)
T ss_dssp             CCSSCEEESSTGGGGGSTTEEEEETTTSCEEEECSS--E--EEETT------CCEEECSEEEECCCBSCSSHHHHTSEEE
T ss_pred             CccccCCCccHHHHhcCCCEEEEeCCCCCccEEecC--e--EEcCC------CCEEECCEEEECCccCccccCcCcceEE
Confidence                         01145888885  6789999873  3  54444      56899999999999999874321   11


Q ss_pred             -ccCcccCC--CCCeeeCCCCC-CCCCCEEEe-cccCCCCCcHHHHHHHHHHHHHHhh
Q psy14927       1019 -EIGIEKDE--KGRVPVNSRFQ-TVIPNIFAI-GDCIHGPMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1019 -~~gl~ld~--~G~I~Vd~~~~-ts~~~IyAi-GD~~~~~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                       .-|+.+++  .+.+.+...+. .+.||+|.+ |..+........+..|+..+++.|.
T Consensus       396 g~~G~~l~~~w~~~~~~y~g~~v~gfPN~f~~~Gp~~~~~s~~~~~e~q~~~i~~~i~  453 (540)
T 3gwf_A          396 GRDGLHINDHWDGQPTSYLGVSTANFPNWFMVLGPNGPFTNLPPSIETQVEWISDTIG  453 (540)
T ss_dssp             CGGGCBHHHHTSSSCCCBTTTBCTTCTTEEESSCSSCBCSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHhhccChhhccccccCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHHH
Confidence             11222221  01122222222 489999999 8765544456777888888877653

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=99.64  E-value=2.9e-16  Score=187.85  Aligned_cols=158  Identities=36%  Similarity=0.524  Sum_probs=139.9

Q ss_pred             HHhhhhhccccccccccCCceEEeccch--------hhccHHHHhccccccccccccccccccccccCCcceEEEEeccC
Q psy14927        368 EVDKYLEMKRNQSFRSSNTDIILPVEKW--------TLLSLARVLEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKL  439 (1074)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (1074)
                      ++++.+.+..++.+||+..+||+.||..        +-.....|...+......+++..+|.++..+++.+.|++++.+ 
T Consensus       313 ~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~p~~a~vGlte~~-  391 (491)
T 3urh_A          313 VLDSRGRVEIDRHFQTSIAGVYAIGDVVRGPMLAHKAEDEGVAVAEIIAGQAGHVNYDVIPGVVYTQPEVASVGKTEEE-  391 (491)
T ss_dssp             CBCTTSCBCCCTTCBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTTSCCCCCTTCCCEEECSSSCEEEEECCHHH-
T ss_pred             eECCCCCEeECCCCCCCCCCEEEEEecCCCccchhHHHHHHHHHHHHHcCCCcccCCCCCCEEEEccCCeEEEeCCHHH-
Confidence            3566777999999999999999999984        1222233356666655667888999999999999999999877 


Q ss_pred             CCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHH
Q psy14927        440 TDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDV  519 (1074)
Q Consensus       440 ~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l  519 (1074)
                              +++.|+++.+.+++|..++|+..++++.||+|++++++||+|||+|++|++++|+|+.+++||+.+.|+++|
T Consensus       392 --------a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l  463 (491)
T 3urh_A          392 --------LKAAGVAYKIGKFPFTANGRARAMLQTDGFVKILADKETDRVLGGHIIGFGAGEMIHEIAVLMEFGGSSEDL  463 (491)
T ss_dssp             --------HHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHH
T ss_pred             --------HHhCCCCEEEEEEecCcchhhhcCCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCcHHHH
Confidence                    888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcccCCccccccc
Q psy14927        520 ARTCHAHPTVCVEKN  534 (1074)
Q Consensus       520 ~~~~~~hPt~s~e~~  534 (1074)
                      .+++|+|||+++.+.
T Consensus       464 ~~~~~~hPt~~e~~~  478 (491)
T 3urh_A          464 GRTCHAHPTMSEAVK  478 (491)
T ss_dssp             HTSCCCSSCTTHHHH
T ss_pred             hcCccCCCChHHHHH
Confidence            999999999998763

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=99.62  E-value=3.7e-16  Score=186.31  Aligned_cols=157  Identities=31%  Similarity=0.407  Sum_probs=138.1

Q ss_pred             HhhhhhccccccccccCCceEEeccchh-----h---ccHHHHhccccccccccccccccccccccCCcceEEEEeccCC
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWT-----L---LSLARVLEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLT  440 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (1074)
                      +++.+.+..|+.+||+..+||..||..-     .   .....|..++......+++..+|..+..+++.+.|++++.+  
T Consensus       294 ~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~vGlte~~--  371 (476)
T 3lad_A          294 LDERGFIYVDDYCATSVPGVYAIGDVVRGAMLAHKASEEGVVVAERIAGHKAQMNYDLIPAVIYTHPEIAGVGKTEQA--  371 (476)
T ss_dssp             BCTTSCBCCCTTSBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHCCCCCCTTCCCEEECSSSEEEEEECCHHH--
T ss_pred             ccCCCCEeeCCCcccCCCCEEEEEccCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCCEEEECcCCEEEeeCCHHH--
Confidence            4566778889999999999999999841     1   22223355565555567888999999999999999999877  


Q ss_pred             CcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHHh
Q psy14927        441 DKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVA  520 (1074)
Q Consensus       441 ~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l~  520 (1074)
                             ++..|+++.+.+++|..++|+..++++.||+|++++++|++|||+|++|++++|+|+.+++||+.+.|+++|.
T Consensus       372 -------a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~  444 (476)
T 3lad_A          372 -------LKAEGVAINVGVFPFAASGRAMAANDTAGFVKVIADAKTDRVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLG  444 (476)
T ss_dssp             -------HHHTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHH
T ss_pred             -------HHhcCCCEEEEEEeccccchheecCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHh
Confidence                   7888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccCCccccccc
Q psy14927        521 RTCHAHPTVCVEKN  534 (1074)
Q Consensus       521 ~~~~~hPt~s~e~~  534 (1074)
                      +++|+|||+++.+.
T Consensus       445 ~~~~~hPt~~e~~~  458 (476)
T 3lad_A          445 MMVFAHPALSEALH  458 (476)
T ss_dssp             TSCCCSSCSHHHHH
T ss_pred             cCccCCCChHHHHH
Confidence            99999999998763

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=99.62  E-value=6.8e-16  Score=183.24  Aligned_cols=160  Identities=18%  Similarity=0.140  Sum_probs=137.4

Q ss_pred             HhhhhhccccccccccCCceEEeccchhh--------ccHHHHhcccccc-ccccccccccccccccCCcceEEEEeccC
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWTL--------LSLARVLEGIEYK-VGKFPFAANSRAKTNNDTDGFVKVLGDKL  439 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (1074)
                      +++.+.+..|+.+||+..+||..||..-+        .....|..++... ...+++..+|.++..+++.+.+++++.+ 
T Consensus       282 ~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vG~te~~-  360 (463)
T 4dna_A          282 TNELGAIIVDAFSRTSTPGIYALGDVTDRVQLTPVAIHEAMCFIETEYKNNPTSPDHDLIATAVFSQPEIGTVGITEEE-  360 (463)
T ss_dssp             BCTTSCBCCCTTCBCSSTTEEECSGGGSSCCCHHHHHHHHHHHHHHHHSSCCCCCCCSCCCEEECSSSCEEEEECCHHH-
T ss_pred             ECCCCCEeECcCCCCCCCCEEEEEecCCCCCChHHHHHHHHHHHHHHcCCCCcccCCCCCCEEEECCCCeEEecCCHHH-
Confidence            56677788999999999999999998331        1122224444432 2335778899999999999999999887 


Q ss_pred             CCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHH
Q psy14927        440 TDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDV  519 (1074)
Q Consensus       440 ~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l  519 (1074)
                              +++.|.++.+.+.+|..++|+...+.+.||+|+++|++|++|||+|++|++++|+|+.+++||+.+.|+++|
T Consensus       361 --------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l  432 (463)
T 4dna_A          361 --------AARKFQEIEVYRAEFRPMKATLSGRKEKTIMKLVVNAADRKVVGAHILGHDAGEMAQLLGISLRAGCTKDDF  432 (463)
T ss_dssp             --------HHHHSSEEEEEEEEECCTTHHHHCCCCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHH
T ss_pred             --------HHHcCCCeEEEEEeccccchhhcCCCceEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHH
Confidence                    777888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcccCCcccccccccc
Q psy14927        520 ARTCHAHPTVCVEKNDTL  537 (1074)
Q Consensus       520 ~~~~~~hPt~s~e~~~~~  537 (1074)
                      .+++|+|||++|.+....
T Consensus       433 ~~~~~~hPt~~e~~~~~~  450 (463)
T 4dna_A          433 DRTMAVHPTAAEELVTMY  450 (463)
T ss_dssp             HTSCCCTTCSGGGGTCCC
T ss_pred             hhcccCCCCHHHHHHHHh
Confidence            999999999999885443

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.60  E-value=2.6e-15  Score=154.18  Aligned_cols=138  Identities=17%  Similarity=0.245  Sum_probs=116.6

Q ss_pred             hhHHhhcCCcEEEEecCCccCC--------CCC-----CHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeec
Q psy14927        922 GSVWGRLGAEVTAIEFMNAIGG--------MGI-----DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENV  988 (1074)
Q Consensus       922 A~~l~~~G~~Vtlv~~~~~~~~--------~~~-----~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~  988 (1074)
                      |..|.+.|.+|+++++.+.++.        +.+     ++++.+.+.+.+++.||+++.+ ++++++.+++++.+++.+ 
T Consensus        17 A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i~~~~~~~~v~~~~-   94 (180)
T 2ywl_A           17 ALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPG-VVKGVRDMGGVFEVETEE-   94 (180)
T ss_dssp             HHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEEEECSSSEEEECSS-
T ss_pred             HHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEEEEcCCEEEEEECC-
Confidence            6677889999999999876552        123     4788888999999999999999 999998866665565433 


Q ss_pred             cCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCC-cHHHHHHHHHHHH
Q psy14927        989 KDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPM-LAHKAEDEGIVCV 1067 (1074)
Q Consensus       989 ~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~-~~~~A~~~G~~aA 1067 (1074)
                           + ++++|.||+|+|..|+.    ...+|++++ +|+|.||++++|+.|+|||+|||+..+. ++..|..+|+.||
T Consensus        95 -----g-~i~ad~vI~A~G~~~~~----~~~~g~~~~-~g~i~vd~~~~t~~~~i~a~GD~~~~~~~~~~~A~~~g~~aa  163 (180)
T 2ywl_A           95 -----G-VEKAERLLLCTHKDPTL----PSLLGLTRR-GAYIDTDEGGRTSYPRVYAAGVARGKVPGHAIISAGDGAYVA  163 (180)
T ss_dssp             -----C-EEEEEEEEECCTTCCHH----HHHHTCCEE-TTEECCCTTCBCSSTTEEECGGGGTCCSCCHHHHHHHHHHHH
T ss_pred             -----C-EEEECEEEECCCCCCCc----cccCCCCcc-CceEEeCCCCCcCCCCEEEeecccCcchhhHHHHHHhHHHHH
Confidence                 3 79999999999999963    356788888 8999999999999999999999999766 8999999999999


Q ss_pred             HHhhC
Q psy14927       1068 EGIAG 1072 (1074)
Q Consensus      1068 ~~I~~ 1072 (1074)
                      .||.+
T Consensus       164 ~~i~~  168 (180)
T 2ywl_A          164 VHLVS  168 (180)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99974

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=99.59  E-value=1.9e-15  Score=180.39  Aligned_cols=161  Identities=13%  Similarity=0.140  Sum_probs=138.0

Q ss_pred             HHhhhhhccccccccccCCceEEeccchhh-----ccHHH---Hhcccccc-ccccccccccccccccCCcceEEEEecc
Q psy14927        368 EVDKYLEMKRNQSFRSSNTDIILPVEKWTL-----LSLAR---VLEGIEYK-VGKFPFAANSRAKTNNDTDGFVKVLGDK  438 (1074)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (1074)
                      ++++.+.+..+..+||+..+||+.||..-+     ....|   |..++... ...+++..+|.+++.+++.+.|++++..
T Consensus       301 ~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~  380 (484)
T 3o0h_A          301 KVNEFGAVVVDEKMTTNVSHIWAVGDVTGHIQLTPVAIHDAMCFVKNAFENTSTTPDYDLITTAVFSQPEIGTVGLSEED  380 (484)
T ss_dssp             CBCTTSCBCCCTTSBCSSTTEEECGGGGTSCCCHHHHHHHHHHHHHHHHC---CCCCCTTCCEEECCSSCEEEEECCHHH
T ss_pred             eECCCCCEeECCCCCCCCCCEEEEEecCCCCcCHHHHHHHHHHHHHHHcCCCCCcCCCCCCcEEEECCCCEEEeeCCHHH
Confidence            356777789999999999999999998431     11222   24444432 2345778899999999999999999888


Q ss_pred             CCCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHH
Q psy14927        439 LTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCED  518 (1074)
Q Consensus       439 ~~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~  518 (1074)
                               +++.|.++.+.+.+|..++|+...+.+.||+|+++|++|++|||+|++|++++|+|+.+++||+.++|+.+
T Consensus       381 ---------a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~  451 (484)
T 3o0h_A          381 ---------ALHRYKRVEIYRTVFRPMRNVLSGSPEKMFMKLVVDGESRIVVGAHVLGENAGEIAQLIGISLKGKLTKDI  451 (484)
T ss_dssp             ---------HHHHCSEEEEEEEEECCHHHHHHTCCCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHH
T ss_pred             ---------HHHcCCCEEEEEecCCcchhhccCCCCcEEEEEEEECCCCEEEEEEEECcCHHHHHHHHHHHHHCCCCHHH
Confidence                     77788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhcccCCcccccccccc
Q psy14927        519 VARTCHAHPTVCVEKNDTL  537 (1074)
Q Consensus       519 l~~~~~~hPt~s~e~~~~~  537 (1074)
                      |.+++|+|||++|.+....
T Consensus       452 l~~~~~~hPt~~e~~~~~~  470 (484)
T 3o0h_A          452 FDKTMAVHPTMSEELVTMY  470 (484)
T ss_dssp             HHHSCCCSSCSGGGGGCCC
T ss_pred             HhccccCCCChHHHHHHHh
Confidence            9999999999999885544

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.59  E-value=2.3e-15  Score=181.47  Aligned_cols=146  Identities=12%  Similarity=0.027  Sum_probs=95.5

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhh-------------------------hhHHHhh
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGT-------------------------KSAAVKA  843 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~-------------------------~~~~~~~  843 (1074)
                      +.+|||||||++|+.+|..|++     +++|+.+..|+.+.+..++..                         ......+
T Consensus         9 ~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~e   88 (545)
T 3uox_A            9 ALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQPE   88 (545)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHHH
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHHH
Confidence            3459999999999999999998     899998877776533222200                         0001234


Q ss_pred             hhhhHHHHhhhCCe--EEEee-eEEEecC----CeEEEEeCCCCeeEEEcCeEEEccC--CCC--CCCCCCCCCCccee-
Q psy14927        844 LTGGIAHLFKSNKV--TQLNG-HGKITGP----NTVTVIKSDGSTEEVKTKNILIATG--SEV--TPFPGIEVDEETIV-  911 (1074)
Q Consensus       844 l~~~~~~~l~~~gV--~~~~g-~v~~id~----~~~~v~~~~G~~~~i~~d~lIIATG--~~p--~~ipgi~~~~~~v~-  911 (1074)
                      +..++.....+.|+  .+.++ +|+.++.    ..+.|++.+|  .++.||+||+|||  +.|  +.+||++......+ 
T Consensus        89 i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G--~~~~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~~h  166 (545)
T 3uox_A           89 MLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNE--EVVTCRFLISATGPLSASRMPDIKGIDSFKGESFH  166 (545)
T ss_dssp             HHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTT--EEEEEEEEEECCCSCBC---CCCTTGGGCCSEEEE
T ss_pred             HHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCC--CEEEeCEEEECcCCCCCCcCCCCCCccccCCCeEE
Confidence            55556666677776  67776 5666642    3568888888  6899999999999  666  34555543222233 


Q ss_pred             chhhHhc---------ch-H--------------hhHHhhcCCcEEEEecCCcc
Q psy14927        912 SSTGALS---------LK-K--------------GSVWGRLGAEVTAIEFMNAI  941 (1074)
Q Consensus       912 t~~~~~~---------~~-~--------------A~~l~~~G~~Vtlv~~~~~~  941 (1074)
                      +......         .. +              |..|.+.+.+||++.|++..
T Consensus       167 ~~~~~~~~~~~~~~~~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~  220 (545)
T 3uox_A          167 SSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNW  220 (545)
T ss_dssp             GGGCCBCTTSCBSCCCCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCC
T ss_pred             cccccccccccccccccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCc
Confidence            2221111         11 1              77778889999999999874

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=99.59  E-value=1.6e-15  Score=180.16  Aligned_cols=155  Identities=17%  Similarity=0.242  Sum_probs=135.1

Q ss_pred             HhhhhhccccccccccCCceEEeccchhh-----ccHHH---Hhcccccc---ccccccccccccccccCCcceEEEEec
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWTL-----LSLAR---VLEGIEYK---VGKFPFAANSRAKTNNDTDGFVKVLGD  437 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (1074)
                      +++.+ +..|+.+||+..+||..||..-+     ....|   |..++...   ...+++..+|..+..+++.+.+++++.
T Consensus       285 ~~~~G-i~vd~~~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~a~vG~te~  363 (466)
T 3l8k_A          285 ISKTG-IVVDETMKTNIPNVFATGDANGLAPYYHAAVRMSIAAANNIMANGMPVDYVDVKSIPVTIYTIPSLSYVGILPS  363 (466)
T ss_dssp             BCSSS-BCCCTTCBCSSTTEEECGGGTCSCCSHHHHHHHHHHHHHHHHTTTSCCCCCCSTTSCEEECSSSCEEEEECCHH
T ss_pred             eCCCC-EeECCCccCCCCCEEEEEecCCCCccHhHHHHHHHHHHHHHhCCCCCccccCCCCCcEEEECCCCeEEecCCHH
Confidence            56778 89999999999999999998432     12222   24444432   234678889999999999999999987


Q ss_pred             cCCCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHH
Q psy14927        438 KLTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCE  517 (1074)
Q Consensus       438 ~~~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~  517 (1074)
                      .         +++.|+++++.+.++.+++|+...+++.||+|++++++||+|||+|++|++++|+|+.+++||+.+.|++
T Consensus       364 ~---------a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~  434 (466)
T 3l8k_A          364 K---------ARKMGIEIVEAEYNMEEDVSAQIYGQKEGVLKLIFERGSMRLIGAWMIGVHSQYLINELGLAVAYGLNAK  434 (466)
T ss_dssp             H---------HHHHTCCEEEEEEEGGGSHHHHHHTCCCCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHH
T ss_pred             H---------HHhCCCCEEEEEEEcccChhheecCCCeEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCcCCHH
Confidence            7         7778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcccCCcccccc
Q psy14927        518 DVARTCHAHPTVCVEK  533 (1074)
Q Consensus       518 ~l~~~~~~hPt~s~e~  533 (1074)
                      +|.+++++|||+++.+
T Consensus       435 ~l~~~~~~~Pt~~e~~  450 (466)
T 3l8k_A          435 QLASFAEQHPSTNEII  450 (466)
T ss_dssp             HHHHCCCCTTSTTHHH
T ss_pred             HHhccccCCCChHHHH
Confidence            9999999999999776

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=99.58  E-value=2.1e-15  Score=179.72  Aligned_cols=157  Identities=19%  Similarity=0.182  Sum_probs=133.8

Q ss_pred             HhhhhhccccccccccCCceEEeccch-----hhccHHH---Hhcccccc--ccccccccccccccccCCcceEEEEecc
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKW-----TLLSLAR---VLEGIEYK--VGKFPFAANSRAKTNNDTDGFVKVLGDK  438 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (1074)
                      +++.+.++.|+.+||+..+||..||..     +.....|   |..++...  ....++..+|..++.+++.+.|++++.+
T Consensus       307 ~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~  386 (478)
T 3dk9_A          307 TDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGLTEDE  386 (478)
T ss_dssp             BCTTCCBCCCTTCBCSSTTEEECGGGGCSSCCHHHHHHHHHHHHHHHHSCCTTCCCCCTTCCEEECCSSCEEEEECCHHH
T ss_pred             eCCCCCEeeCCCcccCCCCEEEEEecCCCCccHhHHHHHHHHHHHHHcCCCCcccCCCCCCCeEEECCCceEEeeCCHHH
Confidence            466777899999999999999999984     1122222   24444433  2346778899999999999999999887


Q ss_pred             CCCcccccccccCC--CcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCH
Q psy14927        439 LTDKVLGVHIIGPG--IEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASC  516 (1074)
Q Consensus       439 ~~~~~lg~~~~~~g--~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~  516 (1074)
                               +++.|  .++.+.+.+|..+++++..+.+.||+|++++++|++|||+|++|++++|+|+.+++||+.+.|+
T Consensus       387 ---------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~  457 (478)
T 3dk9_A          387 ---------AIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATK  457 (478)
T ss_dssp             ---------HHHHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBH
T ss_pred             ---------HHhhCCCccEEEEEeecCcchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCH
Confidence                     66654  5688888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcccCCccccccc
Q psy14927        517 EDVARTCHAHPTVCVEKN  534 (1074)
Q Consensus       517 ~~l~~~~~~hPt~s~e~~  534 (1074)
                      ++|.+++|+|||++|.+.
T Consensus       458 ~~l~~~~~~hPt~~e~~~  475 (478)
T 3dk9_A          458 ADFDNTVAIHPTSSEELV  475 (478)
T ss_dssp             HHHHTSCCCSSSSGGGGG
T ss_pred             HHHhhcccCCCChHHHHH
Confidence            999999999999998863

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=99.55  E-value=6.5e-15  Score=175.65  Aligned_cols=156  Identities=22%  Similarity=0.281  Sum_probs=135.1

Q ss_pred             HhhhhhccccccccccCCceEEeccchhh-----ccHHH---HhccccccccccccccccccccccCCcceEEEEeccCC
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWTL-----LSLAR---VLEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLT  440 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (1074)
                      +++.+.++.|+++|||..+||..||..-+     ....|   |..++......+++..+|..+..+++.+.+++++..  
T Consensus       300 ~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~vG~te~~--  377 (482)
T 1ojt_A          300 VTDRGFIEVDKQMRTNVPHIYAIGDIVGQPMLAHKAVHEGHVAAENCAGHKAYFDARVIPGVAYTSPEVAWVGETELS--  377 (482)
T ss_dssp             CCTTSCCCCCTTSBCSSTTEEECGGGTCSSCCHHHHHHHHHHHHHHHTTCCCCCCCCCCCEEECSSSCEEEEECCHHH--
T ss_pred             eCCCCCEeeCCCcccCCCCEEEEEcccCCCccHHHHHHHHHHHHHHHcCCCccCCCCCCCEEEEcCCCeEEEeCCHHH--
Confidence            45567788999999999999999998432     11222   245555444456778889999999999999998877  


Q ss_pred             CcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHHh
Q psy14927        441 DKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVA  520 (1074)
Q Consensus       441 ~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l~  520 (1074)
                             ++..|+++.+..+++..++|+...+++.||+|+++++++|+|||+|++|++++|+|+.+++||+.+.|+++|.
T Consensus       378 -------a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~  450 (482)
T 1ojt_A          378 -------AKASARKITKANFPWAASGRAIANGCDKPFTKLIFDAETGRIIGGGIVGPNGGDMIGEVCLAIEMGCDAADIG  450 (482)
T ss_dssp             -------HHHHTCCEEEEEEEGGGCHHHHHTTCCSCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHH
T ss_pred             -------HHhcCCCEEEEEEEcCcchHHhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHh
Confidence                   7777889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccCCcccccc
Q psy14927        521 RTCHAHPTVCVEK  533 (1074)
Q Consensus       521 ~~~~~hPt~s~e~  533 (1074)
                      +++|+|||+++.+
T Consensus       451 ~~~~~~Pt~~e~~  463 (482)
T 1ojt_A          451 KTIHPHPTLGESI  463 (482)
T ss_dssp             TSCCCSSSSTTHH
T ss_pred             cCccCCCCHHHHH
Confidence            9999999999765

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=99.54  E-value=4.4e-15  Score=177.41  Aligned_cols=156  Identities=16%  Similarity=0.156  Sum_probs=131.7

Q ss_pred             Hhhhhhcccc-ccccccCCceEEeccchhhc--------cHHHHhccccc--cccccccccccccccccCCcceEEEEec
Q psy14927        369 VDKYLEMKRN-QSFRSSNTDIILPVEKWTLL--------SLARVLEGIEY--KVGKFPFAANSRAKTNNDTDGFVKVLGD  437 (1074)
Q Consensus       369 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (1074)
                      +++.+.+..+ ..+||++.+||..||..-+.        ....|..++..  ....+++..+|..+..+++.+.+++++.
T Consensus       288 ~~~~G~i~vd~~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~  367 (492)
T 3ic9_A          288 LDKKNSPLFDELTLQTSVDHIFVAGDANNTLTLLHEAADDGKVAGTNAGAYPVIAQGQRRAPLSVVFTEPQVASVGLSLR  367 (492)
T ss_dssp             BCTTCCBCCCTTTCBCSSTTEEECGGGGTSSCSHHHHHHHHHHHHHHHHHTTSCCEECCCCCEEEECSSSEEEEEESCHH
T ss_pred             ECCCCCEeECcccccCCCCCEEEEEecCCCCccHHHHHHHHHHHHHHHcCCCCCcccCCCCCcEEEECCCCeEEecCCHH
Confidence            4566777888 89999999999999984321        12222444432  1224566778899999999999999987


Q ss_pred             cCCCcccccccccC-----CCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHc
Q psy14927        438 KLTDKVLGVHIIGP-----GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEY  512 (1074)
Q Consensus       438 ~~~~~~lg~~~~~~-----g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~  512 (1074)
                      +         +++.     |+++.+.+.+|..++|+...+.+.||+|++++++||+|||+|++|++++|+|+.+++||+.
T Consensus       368 ~---------a~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~  438 (492)
T 3ic9_A          368 Q---------IEDLYADQDAANYVVGQVSFEGQGRSRVMGKNKGLLNVYADRTSGEFLGAEMFGPAAEHIGHLLAWARQQ  438 (492)
T ss_dssp             H---------HHHHCSCSSSCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHT
T ss_pred             H---------HHhccCccCCccEEEEEEEeccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHC
Confidence            7         5555     4789999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHhhhcccCCcccccc
Q psy14927        513 GASCEDVARTCHAHPTVCVEK  533 (1074)
Q Consensus       513 ~~~~~~l~~~~~~hPt~s~e~  533 (1074)
                      +.|+++|.+++|+|||++|.+
T Consensus       439 ~~t~~~l~~~~~~hPt~~e~~  459 (492)
T 3ic9_A          439 QMTVQAMLTMPFYHPVIEEGL  459 (492)
T ss_dssp             TCBHHHHTTSCCCTTCTHHHH
T ss_pred             CCCHHHHhhCCCCCCChHHHH
Confidence            999999999999999999876

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=99.54  E-value=3.7e-15  Score=178.54  Aligned_cols=155  Identities=14%  Similarity=0.092  Sum_probs=102.8

Q ss_pred             hhccccccccccCCceEEeccchhhc---c---HHH---Hhccccc-cccccccccccccccccCCcceEEEEeccCCCc
Q psy14927        373 LEMKRNQSFRSSNTDIILPVEKWTLL---S---LAR---VLEGIEY-KVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDK  442 (1074)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (1074)
                      +.+..|.++|||+.+||..||..-++   +   ..|   |.+++.. ......+..+|.+++.+|+.+.|++++.+    
T Consensus       338 ~~i~vd~~~~Ts~p~IyAiGDv~~~~p~La~~A~~eg~~aa~~i~g~~~~~~d~~~iP~~vft~PeiA~VGlTE~e----  413 (542)
T 4b1b_A          338 NKIIADHLSCTNIPSIFAVGDVAENVPELAPVAIKAGEILARRLFKDSDEIMDYSYIPTSIYTPIEYGACGYSEEK----  413 (542)
T ss_dssp             TEECCCTTSBCSSTTEEECTTSBTTCCCCHHHHHHHHHHHHHHHHSCCCCCCCCSSCCEEECSSSCEEEEECCHHH----
T ss_pred             ceEeccccccccCCCeEEeccccCCchhHHHHHHHHHHHHHHHHhcCCCcccCCCCCceEEeCCCCeEEEeCCHHH----
Confidence            33578889999999999999986442   1   122   2333332 23345678999999999999999999987    


Q ss_pred             ccccccccCCCcEEEEeeccCccchhh-----------------hcCCCcceEEEEE-ECCCCcEEEEEEeCCChhHHHH
Q psy14927        443 VLGVHIIGPGIEYKVGKFPFAANSRAK-----------------TNNDTDGFVKVLG-DKLTDKVLGVHIIGPAAGELIN  504 (1074)
Q Consensus       443 ~lg~~~~~~g~~~~v~~~~~~~~~ra~-----------------~~~~~~G~~Kli~-~~~~~~ilG~~iiG~~a~eli~  504 (1074)
                           +++.|.++.+..+++...++++                 ..+.+.||+|+++ +++|++|||+||+|++|+|+|+
T Consensus       414 -----A~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vKli~~~~~t~~ILGa~ivG~~A~ElI~  488 (542)
T 4b1b_A          414 -----AYELYGKSNVEVFLQEFNNLEISAVHRQKHIRAQKDEYDLDVSSTCLAKLVCLKNEDNRVIGFHYVGPNAGEVTQ  488 (542)
T ss_dssp             -----HHHHHCTTTEEEEEC-----------------------------CCCEEEEEETTTTTBEEEEEEESTTHHHHHH
T ss_pred             -----HHHhCCCCcEEEEEeeccchhhhhhhhhhhhhcccccccccCCCceEEEEEEEeCCCCEEEEEEEECCCHHHHHH
Confidence                 6666655545444444333322                 2356889999996 5579999999999999999999


Q ss_pred             HHHHHHHcCCCHHHHhhhcccCCccccccccc
Q psy14927        505 EAVLAMEYGASCEDVARTCHAHPTVCVEKNDT  536 (1074)
Q Consensus       505 ~~a~a~~~~~~~~~l~~~~~~hPt~s~e~~~~  536 (1074)
                      .+++||+++.|+++|.+++|+|||++|.+.+.
T Consensus       489 ~~alAi~~~~t~~dl~~~i~~HPTlsE~l~~~  520 (542)
T 4b1b_A          489 GMALALRLKVKKKDFDNCIGIHPTDAESFMNL  520 (542)
T ss_dssp             HHHHHHHTCCBHHHHHHC--------------
T ss_pred             HHHHHHHcCCCHHHHhccCCcCCCHHHHHHHH
Confidence            99999999999999999999999999987553

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.53  E-value=2.5e-14  Score=172.56  Aligned_cols=146  Identities=15%  Similarity=0.135  Sum_probs=98.5

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhh-------------------------hhHHHhh
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGT-------------------------KSAAVKA  843 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~-------------------------~~~~~~~  843 (1074)
                      +.+|||||||++|+.+|..|++     +++|+.+..|+.+.+...+..                         ......+
T Consensus        21 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~e  100 (549)
T 4ap3_A           21 SYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPE  100 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHHH
T ss_pred             CCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHHH
Confidence            4469999999999999999998     899998877765432221110                         0001234


Q ss_pred             hhhhHHHHhhhCCe--EEEee-eEEEec--C--CeEEEEeCCCCeeEEEcCeEEEccC--CCC--CCCCCCCCCCcceec
Q psy14927        844 LTGGIAHLFKSNKV--TQLNG-HGKITG--P--NTVTVIKSDGSTEEVKTKNILIATG--SEV--TPFPGIEVDEETIVS  912 (1074)
Q Consensus       844 l~~~~~~~l~~~gV--~~~~g-~v~~id--~--~~~~v~~~~G~~~~i~~d~lIIATG--~~p--~~ipgi~~~~~~v~t  912 (1074)
                      +..++...+.+.|+  +++++ +|+.++  .  ..+.|++.+|  .++.||+||+|||  +.|  +.+||++.....+++
T Consensus       101 i~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G--~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~~~  178 (549)
T 4ap3_A          101 ILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRG--DEVSARFLVVAAGPLSNANTPAFDGLDRFTGDIVH  178 (549)
T ss_dssp             HHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTC--CEEEEEEEEECCCSEEECCCCCCTTGGGCCSEEEE
T ss_pred             HHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCC--CEEEeCEEEECcCCCCCCCCCCCCCcccCCCceEE
Confidence            55667777788887  78887 577664  2  2568888888  5799999999999  565  345665432223333


Q ss_pred             hhh----HhcchH---------------hhHHhhcCCcEEEEecCCcc
Q psy14927        913 STG----ALSLKK---------------GSVWGRLGAEVTAIEFMNAI  941 (1074)
Q Consensus       913 ~~~----~~~~~~---------------A~~l~~~G~~Vtlv~~~~~~  941 (1074)
                      +..    ......               |..|.+.|.+||++.|++..
T Consensus       179 ~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~  226 (549)
T 4ap3_A          179 TARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANY  226 (549)
T ss_dssp             GGGCCTTCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred             eccccccccccCCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCc
Confidence            322    122211               77788889999999999874

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.53  E-value=1.4e-14  Score=171.54  Aligned_cols=156  Identities=31%  Similarity=0.370  Sum_probs=134.6

Q ss_pred             HhhhhhccccccccccCCceEEeccchhh-----ccHHH---HhccccccccccccccccccccccCCcceEEEEeccCC
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWTL-----LSLAR---VLEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLT  440 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (1074)
                      +++.+.++.|+++||+..+||..||..-+     ....|   |..++......+++..+|..+..+++.+.+++++..  
T Consensus       284 ~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~--  361 (455)
T 1ebd_A          284 MTNRGLIEVDQQCRTSVPNIFAIGDIVPGPALAHKASYEGKVAAEAIAGHPSAVDYVAIPAVVFSDPECASVGYFEQQ--  361 (455)
T ss_dssp             BCTTSCBCCCTTCBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTSCCCCCCCSCCCEEECSSSCEEEEECCHHH--
T ss_pred             cCCCCCEeeCCCcccCCCCEEEEeccCCCcccHHHHHHHHHHHHHHHcCCCccCCCCCCCEEEECCCceEEEeCCHHH--
Confidence            45567788999999999999999998332     12223   245555444456677889999999999999998776  


Q ss_pred             CcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHHh
Q psy14927        441 DKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVA  520 (1074)
Q Consensus       441 ~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l~  520 (1074)
                             ++..|+++.+...++..++|+...+++.||+|+++++++|+|||+|++|++++|+|+.+++||+.+.|+++|.
T Consensus       362 -------a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~  434 (455)
T 1ebd_A          362 -------AKDEGIDVIAAKFPFAANGRALALNDTDGFLKLVVRKEDGVIIGAQIIGPNASDMIAELGLAIEAGMTAEDIA  434 (455)
T ss_dssp             -------HHTTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHHTCBHHHHH
T ss_pred             -------HHhcCCCEEEEEEEcCcchHHhhcCCCcEEEEEEEECCCCEEEEEEEeCCCHHHHHHHHHHHHHCCCCHHHHh
Confidence                   7778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccCCcccccc
Q psy14927        521 RTCHAHPTVCVEK  533 (1074)
Q Consensus       521 ~~~~~hPt~s~e~  533 (1074)
                      +++++|||+++.+
T Consensus       435 ~~~~~~Pt~~e~~  447 (455)
T 1ebd_A          435 LTIHAHPTLGEIA  447 (455)
T ss_dssp             HSCCCTTSSTHHH
T ss_pred             hcccCCCCHHHHH
Confidence            9999999999765

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.51  E-value=2.2e-14  Score=173.43  Aligned_cols=262  Identities=17%  Similarity=0.179  Sum_probs=157.2

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhh-------------hhh------------HHHhh
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMG-------------TKS------------AAVKA  843 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~-------------~~~------------~~~~~  843 (1074)
                      +.+|+|||||++|+.+|..|++     +++|+.+..|+.+.+...+.             +..            ....+
T Consensus        16 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~~   95 (542)
T 1w4x_A           16 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPE   95 (542)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHH
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHHH
Confidence            4459999999999999999998     78998877665432111110             000            00123


Q ss_pred             hhhhHHHHhhhCC--eEEEee-eEEEecC----CeEEEEeCCCCeeEEEcCeEEEccCC--CC--CCCCCCCCCCcceec
Q psy14927        844 LTGGIAHLFKSNK--VTQLNG-HGKITGP----NTVTVIKSDGSTEEVKTKNILIATGS--EV--TPFPGIEVDEETIVS  912 (1074)
Q Consensus       844 l~~~~~~~l~~~g--V~~~~g-~v~~id~----~~~~v~~~~G~~~~i~~d~lIIATG~--~p--~~ipgi~~~~~~v~t  912 (1074)
                      +..++.....+.+  ++++++ +|+.++.    ..+.|++++|  .++.+|+||+|||.  .|  +.+||+......+++
T Consensus        96 i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G--~~~~ad~vV~AtG~~s~p~~p~i~G~~~f~G~~~h  173 (542)
T 1w4x_A           96 ILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHG--DRIRARYLIMASGQLSVPQLPNFPGLKDFAGNLYH  173 (542)
T ss_dssp             HHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTC--CEEEEEEEEECCCSCCCCCCCCCTTGGGCCSEEEE
T ss_pred             HHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCC--CEEEeCEEEECcCCCCCCCCCCCCCcccCCCceEE
Confidence            3444555555555  567777 5666542    3577888888  57999999999995  44  235554322222232


Q ss_pred             hhhHh----cch-H--------------hhHHhhcCCcEEEEecCCccCCCC----CCHHHHH-----------------
Q psy14927        913 STGAL----SLK-K--------------GSVWGRLGAEVTAIEFMNAIGGMG----IDGEVAK-----------------  952 (1074)
Q Consensus       913 ~~~~~----~~~-~--------------A~~l~~~G~~Vtlv~~~~~~~~~~----~~~~~~~-----------------  952 (1074)
                      +....    ... +              +..+...|.+||++.|.+....|.    +.+....                 
T Consensus       174 s~~~~~~~~~~~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~~~p~~~~~~~~~~~~~~~~~~p~l~~~~~~~~  253 (542)
T 1w4x_A          174 TGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPARNAPLDPEFLADLKKRYAEFREESRNTP  253 (542)
T ss_dssp             GGGCCSSCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECCCCBCCHHHHHHHHTTHHHHHHHHHTSS
T ss_pred             CCCCCCchhccCCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcccccCCCCCCCHHHHHHHHhhCHHHHHHHHhhc
Confidence            22211    111 1              666777899999999887652121    1111110                 


Q ss_pred             ------------------------------------------------------HHHH----------------------
Q psy14927        953 ------------------------------------------------------QFQR----------------------  956 (1074)
Q Consensus       953 ------------------------------------------------------~~~~----------------------  956 (1074)
                                                                            .+.+                      
T Consensus       254 ~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~  333 (542)
T 1w4x_A          254 GGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEFIRNKIRNTVRDPEVAERLVPKGYPF  333 (542)
T ss_dssp             SSSCCCCCCSCTTTSCHHHHHHHHHHHHHHCSGGGGGSSTTTTTCHHHHHHHHHHHHHHHHHHCSSHHHHHHHSCCSSCS
T ss_pred             cccccCccccchhcCCHHHHHHHHHHHHhhcchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHcCCHHHHHhcCCCCCCc
Confidence                                                                  0001                      


Q ss_pred             -------------HHHhCCCEEE--eCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccC
Q psy14927        957 -------------ILGKQGMQFK--LGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIG 1021 (1074)
Q Consensus       957 -------------~l~~~gV~i~--~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~g 1021 (1074)
                                   .+.+.+|+++  .+..|++|++  ++  |.+.+       +++++|.||+|||+.|++.++  ...+
T Consensus       334 ~~kr~~~~~~y~~~~~~~~v~lv~~~~~~i~~i~~--~g--v~~~d-------~~~~~D~ii~atG~~~~~~~~--~~~~  400 (542)
T 1w4x_A          334 GTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITP--RG--VRTSE-------REYELDSLVLATGFDALTGAL--FKID  400 (542)
T ss_dssp             SSSCCEEESSHHHHTTSTTEEEEETTTSCEEEECS--SE--EEESS-------CEEECSEEEECCCCCCTTHHH--HTSE
T ss_pred             cccCCCCCccHHHHhCCCCEEEEecCCCCceEEcC--Ce--EEeCC-------eEEecCEEEEcCCccccccCc--Ccee
Confidence                         1112356666  3567888865  33  43332       579999999999999987652  3332


Q ss_pred             cccCCCCCeeeC-------CC--CC-CCCCCEEEe-cccCC--CCCcHHHHHHHHHHHHHHhh
Q psy14927       1022 IEKDEKGRVPVN-------SR--FQ-TVIPNIFAI-GDCIH--GPMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1022 l~ld~~G~I~Vd-------~~--~~-ts~~~IyAi-GD~~~--~~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                      +. ..+|.+..+       .+  +. .+.||+|++ |+.+.  .+..+..|..|++.++++|.
T Consensus       401 i~-g~~G~~l~~~w~~~~~~y~~~~v~~~Pn~f~~~G~~~~~~~~~~~~~~e~q~~~ia~~i~  462 (542)
T 1w4x_A          401 IR-GVGNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSALSNMLVSIEQHVEWVTDHIA  462 (542)
T ss_dssp             EE-CGGGCBHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             eE-CCCCCCHHHhhcCchheecccccCCCCceEEEcCCCCCcccccHHHHHHHHHHHHHHHHH
Confidence            22 223444332       11  22 478999998 99854  34556889999999999885

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=99.50  E-value=2e-14  Score=170.60  Aligned_cols=156  Identities=25%  Similarity=0.320  Sum_probs=133.8

Q ss_pred             HhhhhhccccccccccCCceEEeccchhhc-----cHHHH---hccccc-cccc-cccccccccccccCCcceEEEEecc
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWTLL-----SLARV---LEGIEY-KVGK-FPFAANSRAKTNNDTDGFVKVLGDK  438 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  438 (1074)
                      +++.+.+..|+++|||..+||..||..-+.     ...|+   ..++.. .... +++..+|..+..+++.+.+++++..
T Consensus       285 ~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~  364 (464)
T 2a8x_A          285 LTDRKAIGVDDYMRTNVGHIYAIGDVNGLLQLAHVAEAQGVVAAETIAGAETLTLGDHRMLPRATFCQPNVASFGLTEQQ  364 (464)
T ss_dssp             BCTTSSBCCCTTSBCSSTTEEECGGGGCSSCSHHHHHHHHHHHHHHHHTCCCCCCCCGGGSCEEECSSSEEEEEECCHHH
T ss_pred             cCCCCCEeECcCCccCCCCEEEeECcCCCccCHHHHHHHHHHHHHHhcCCCCcccCCCCCCCEEEECCCCeEEEcCCHHH
Confidence            456677999999999999999999984321     12222   444443 3334 5577889999999999999998776


Q ss_pred             CCCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHH
Q psy14927        439 LTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCED  518 (1074)
Q Consensus       439 ~~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~  518 (1074)
                               ++..|+++.+...++..++|+...+++.||+|+++++++++|||+|++|++++|+|+.+++||+.+.|+++
T Consensus       365 ---------a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~  435 (464)
T 2a8x_A          365 ---------ARNEGYDVVVAKFPFTANAKAHGVGDPSGFVKLVADAKHGELLGGHLVGHDVAELLPELTLAQRWDLTASE  435 (464)
T ss_dssp             ---------HHHTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEEETTGGGGHHHHHHHHHTTCBHHH
T ss_pred             ---------HHhcCCCEEEEEEEcchhhhhhhcCCCcEEEEEEEECCCCEEEEEEEECcCHHHHHHHHHHHHHCCCCHHH
Confidence                     77788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhcccCCcccccc
Q psy14927        519 VARTCHAHPTVCVEK  533 (1074)
Q Consensus       519 l~~~~~~hPt~s~e~  533 (1074)
                      |.+++++|||+++.+
T Consensus       436 l~~~~~~~Pt~~e~~  450 (464)
T 2a8x_A          436 LARNVHTHPTMSEAL  450 (464)
T ss_dssp             HTTSCCCTTCTTHHH
T ss_pred             HhhCccCCCChHHHH
Confidence            999999999999766

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=99.50  E-value=2.1e-14  Score=171.00  Aligned_cols=156  Identities=44%  Similarity=0.659  Sum_probs=135.2

Q ss_pred             HhhhhhccccccccccCCceEEeccchhhc--------cHHHHhccccccccccccccccccccccCCcceEEEEeccCC
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWTLL--------SLARVLEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLT  440 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (1074)
                      +++.+.+..|+.+||+..+||..||..-+.        ....|..++......+++..+|..+..+++.+.+++++..  
T Consensus       296 ~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~--  373 (474)
T 1zmd_A          296 LDPRGRIPVNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAWVGKSEEQ--  373 (474)
T ss_dssp             CCTTSCCCCCTTCBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTTCCCCCCGGGCCEEECSSSEEEEEECCHHH--
T ss_pred             cCCCCCEEECcCCccCCCCEEEeeecCCCCccHHHHHHHHHHHHHHhcCCCCcCCCCCCCEEEECCCCeEEEeCCHHH--
Confidence            456677889999999999999999984321        2222355555444557788899999999999999998776  


Q ss_pred             CcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHHh
Q psy14927        441 DKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVA  520 (1074)
Q Consensus       441 ~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l~  520 (1074)
                             ++..|+++.+...++..++|+...+++.||+|+++++++|+|||+|++|++++|+|+.+++||+.+.|+++|.
T Consensus       374 -------a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~  446 (474)
T 1zmd_A          374 -------LKEEGIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALALEYGASCEDIA  446 (474)
T ss_dssp             -------HHHHTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHH
T ss_pred             -------HHhcCCCEEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHh
Confidence                   6667889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccCCcccccc
Q psy14927        521 RTCHAHPTVCVEK  533 (1074)
Q Consensus       521 ~~~~~hPt~s~e~  533 (1074)
                      .++++|||+++.+
T Consensus       447 ~~~~~~Pt~~e~~  459 (474)
T 1zmd_A          447 RVCHAHPTLSEAF  459 (474)
T ss_dssp             HSCCCTTCTHHHH
T ss_pred             hCcCCCCCHHHHH
Confidence            9999999999766

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.50  E-value=2.5e-14  Score=170.20  Aligned_cols=156  Identities=38%  Similarity=0.575  Sum_probs=134.3

Q ss_pred             HhhhhhccccccccccCCceEEeccchhh--------ccHHHHhccccccccccccccccccccccCCcceEEEEeccCC
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWTL--------LSLARVLEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLT  440 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (1074)
                      +++.+.+..|+.+||+..+||..||..-+        .....|..++......+++..+|..+..+++.+.+++++..  
T Consensus       293 ~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~vG~~e~~--  370 (470)
T 1dxl_A          293 TDKLGRILVNERFSTNVSGVYAIGDVIPGPMLAHKAEEDGVACVEYLAGKVGHVDYDKVPGVVYTNPEVASVGKTEEQ--  370 (470)
T ss_dssp             BCSSSCBCCCTTCBCSSTTEEECSTTSSSCCCHHHHHHHHHHHHHHHTTSCCCCCTTSCCEEECSSSEEEEEECCHHH--
T ss_pred             cCCCCCEeECcCCccCCCCEEEEeccCCCCccHHHHHHHHHHHHHHHcCCCcCCCCCCCCEEEECCCceEEEcCCHHH--
Confidence            35567788999999999999999998332        11222345555444456677889999999999999998776  


Q ss_pred             CcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHHh
Q psy14927        441 DKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVA  520 (1074)
Q Consensus       441 ~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l~  520 (1074)
                             ++..|+++.+..+++..++|+...+++.||+|+++++++|+|||+|++|++++|+|+.+++||+.+.|+++|.
T Consensus       371 -------a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~  443 (470)
T 1dxl_A          371 -------VKETGVEYRVGKFPFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIMAPNAGELIHEAAIALQYDASSEDIA  443 (470)
T ss_dssp             -------HHHTTCCEEEEEEEGGGCHHHHHHSCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHH
T ss_pred             -------HHhcCCcEEEEEEecccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHh
Confidence                   7778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccCCcccccc
Q psy14927        521 RTCHAHPTVCVEK  533 (1074)
Q Consensus       521 ~~~~~hPt~s~e~  533 (1074)
                      .++++|||+++.+
T Consensus       444 ~~~~~~Pt~~e~~  456 (470)
T 1dxl_A          444 RVCHAHPTMSEAI  456 (470)
T ss_dssp             TSCCCSSCTTHHH
T ss_pred             hcccCCCChHHHH
Confidence            9999999999765

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=99.50  E-value=3.8e-14  Score=170.38  Aligned_cols=167  Identities=14%  Similarity=0.149  Sum_probs=131.9

Q ss_pred             hhhhccccccccccCCceEEeccchhh--c----cHHH---Hhcccccc-ccccccccccccccccCCcceEEEEeccCC
Q psy14927        371 KYLEMKRNQSFRSSNTDIILPVEKWTL--L----SLAR---VLEGIEYK-VGKFPFAANSRAKTNNDTDGFVKVLGDKLT  440 (1074)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (1074)
                      +++.+..|+++||+..+||..||...|  .    ...|   |..++... ....++..+|.+++.+++.+.|++++.+  
T Consensus       332 ~~G~I~Vd~~~~Ts~~~IyA~GD~~~g~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vGlte~~--  409 (519)
T 3qfa_A          332 KTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEK--  409 (519)
T ss_dssp             TTCCBCCCTTSBCSSTTEEECGGGBSSSCCCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEEECSSSCEEEEECCHHH--
T ss_pred             CCCeEeeCCCCccCCCCEEEEEeccCCCCccHHHHHHHHHHHHHHHcCCCCccCCCCcCcEEEECCCceEEecCCHHH--
Confidence            467789999999999999999998521  1    1222   24444322 2345778889999999999999999887  


Q ss_pred             CcccccccccCC--CcEEEEeeccCccchhhhcC-CCcceEEEEEEC-CCCcEEEEEEeCCChhHHHHHHHHHHHcCCCH
Q psy14927        441 DKVLGVHIIGPG--IEYKVGKFPFAANSRAKTNN-DTDGFVKVLGDK-LTDKVLGVHIIGPAAGELINEAVLAMEYGASC  516 (1074)
Q Consensus       441 ~~~lg~~~~~~g--~~~~v~~~~~~~~~ra~~~~-~~~G~~Kli~~~-~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~  516 (1074)
                             +++.+  ..+.+.+.+|..++++.... .+.||+|+++|+ +|++|||+|++|++++|+|+.+++||+.+.|+
T Consensus       410 -------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~ilGa~i~g~~a~e~i~~~~~ai~~~~t~  482 (519)
T 3qfa_A          410 -------AVEKFGEENIEVYHSYFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTK  482 (519)
T ss_dssp             -------HHHHHCGGGEEEEEEEECCHHHHTTTCCTTTEEEEEEEETTTTCEEEEEEEESTTHHHHHHHHHHHHHTTCBH
T ss_pred             -------HHhhCCCCCEEEEEEeccchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCH
Confidence                   55442  36788888888877776654 578999999998 58999999999999999999999999999999


Q ss_pred             HHHhhhcccCCcccccccc-----ccCCcccccCC
Q psy14927        517 EDVARTCHAHPTVCVEKND-----TLGGTCLNVGC  546 (1074)
Q Consensus       517 ~~l~~~~~~hPt~s~e~~~-----~~ggtc~n~GC  546 (1074)
                      ++|.+++|+|||++|.+..     ..|....+.||
T Consensus       483 ~~l~~~~~~hPt~~E~~~~~~~~~~~~~~~~~~~~  517 (519)
T 3qfa_A          483 KQLDSTIGIHPVCAEVFTTLSVTKRSGASILQAGS  517 (519)
T ss_dssp             HHHHHSCCCTTCGGGGGGGCCCBTTTTCCCCCCCT
T ss_pred             HHHhccccCCCChHHHHHHHHhhhhcCCChhhccC
Confidence            9999999999999988744     23444555555

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=99.50  E-value=2.9e-14  Score=169.43  Aligned_cols=156  Identities=42%  Similarity=0.538  Sum_probs=134.7

Q ss_pred             HhhhhhccccccccccCCceEEeccchh-h-cc----HHHH---hccccccccccccccccccccccCCcceEEEEeccC
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWT-L-LS----LARV---LEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKL  439 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (1074)
                      +++.+.++.|+++||+..+||..||..- + ..    ..|+   ..++......+++..+|..+..+++.+.+++++.. 
T Consensus       290 ~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~-  368 (468)
T 2qae_A          290 KNERGFVKIGDHFETSIPDVYAIGDVVDKGPMLAHKAEDEGVACAEILAGKPGHVNYGVIPAVIYTMPEVASVGKSEDE-  368 (468)
T ss_dssp             BCTTSCBCCCTTSBCSSTTEEECGGGBSSSCSCHHHHHHHHHHHHHHHTTCCCCCCTTSCCEEECSSSEEEEEECCHHH-
T ss_pred             cCCCCCEeECCCcccCCCCEEEeeccCCCCCccHhHHHHHHHHHHHHHcCCCccCCCCCCCEEEECCCceEEEeCCHHH-
Confidence            4566778999999999999999999854 2 22    2222   44444444456677889999999999999998776 


Q ss_pred             CCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHH
Q psy14927        440 TDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDV  519 (1074)
Q Consensus       440 ~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l  519 (1074)
                              ++..|+++.+..+++..++|+...+++.||+|+++++++|+|||+|++|+.++|+|+.+++||+.+.|+++|
T Consensus       369 --------a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l  440 (468)
T 2qae_A          369 --------LKKEGVAYKVGKFPFNANSRAKAVSTEDGFVKVLVDKATDRILGVHIVCTTAGELIGEACLAMEYGASSEDV  440 (468)
T ss_dssp             --------HHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHH
T ss_pred             --------HHhcCCCEEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHH
Confidence                    777889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcccCCcccccc
Q psy14927        520 ARTCHAHPTVCVEK  533 (1074)
Q Consensus       520 ~~~~~~hPt~s~e~  533 (1074)
                      ..++++|||+++.+
T Consensus       441 ~~~~~~~Pt~~e~~  454 (468)
T 2qae_A          441 GRTCHAHPTMSEAL  454 (468)
T ss_dssp             HTSCCCSSCTHHHH
T ss_pred             hhcccCCCCHHHHH
Confidence            99999999999765

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=99.49  E-value=3.2e-14  Score=168.79  Aligned_cols=156  Identities=34%  Similarity=0.404  Sum_probs=133.5

Q ss_pred             HhhhhhccccccccccCCceEEeccchhh-----c---cHHHHhccccccccccccccccccccccCCcceEEEEeccCC
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWTL-----L---SLARVLEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLT  440 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (1074)
                      +++.+.++.|+++|||..+||..||..-+     .   ....|+.++......+++. +|..+..+++.+.+++++..  
T Consensus       285 ~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~-~p~~~~~~~~~a~vG~~e~~--  361 (464)
T 2eq6_A          285 VDERGFIRVNARMETSVPGVYAIGDAARPPLLAHKAMREGLIAAENAAGKDSAFDYQ-VPSVVYTSPEWAGVGLTEEE--  361 (464)
T ss_dssp             BCTTSCBCCCTTCBCSSTTEEECGGGTCSSCCHHHHHHHHHHHHHHHTTCCCCCCCC-CCEEECSSSEEEEEECCHHH--
T ss_pred             ecCCCCEEECCCcccCCCCEEEEeccCCCcccHHHHHHHHHHHHHHhcCCCcccCCC-CCeEEECCCCEEEEeCCHHH--
Confidence            45667788999999999999999998432     1   2222355555444456667 88888899999999988776  


Q ss_pred             CcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHHh
Q psy14927        441 DKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVA  520 (1074)
Q Consensus       441 ~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l~  520 (1074)
                             ++..|+++.+...++..++|+...+++.||+|+++++++|+|||+|++|++++|+|+.+++||+.+.|+++|.
T Consensus       362 -------a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~  434 (464)
T 2eq6_A          362 -------AKRAGYKVKVGKFPLAASGRALTLGGAEGMVKVVGDEETDLLLGVFIVGPQAGELIAEAALALEMGATLTDLA  434 (464)
T ss_dssp             -------HHHTTCCEEEEEEEGGGCHHHHHTSCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHH
T ss_pred             -------HHhcCCCEEEEEEEcCcchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHh
Confidence                   7778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccCCccccccc
Q psy14927        521 RTCHAHPTVCVEKN  534 (1074)
Q Consensus       521 ~~~~~hPt~s~e~~  534 (1074)
                      +++++|||+++.+.
T Consensus       435 ~~~~~~Pt~~e~~~  448 (464)
T 2eq6_A          435 LTVHPHPTLSESLM  448 (464)
T ss_dssp             HSCCCSSCTTHHHH
T ss_pred             cCcCCCCChHHHHH
Confidence            99999999997763

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=99.49  E-value=4.8e-14  Score=168.49  Aligned_cols=160  Identities=16%  Similarity=0.126  Sum_probs=133.6

Q ss_pred             HhhhhhccccccccccCCceEEeccchhh--c---cHHHH---hcccccc-ccccccccccccccccCCcceEEEEeccC
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWTL--L---SLARV---LEGIEYK-VGKFPFAANSRAKTNNDTDGFVKVLGDKL  439 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (1074)
                      +++.+.+..|+++||+..+||..||..-+  +   ...|+   +.++... ....++..+|..+..+++.+.|++++.. 
T Consensus       306 ~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vGl~e~~-  384 (495)
T 2wpf_A          306 LTPKGGVQVDEFSRTNVPNIYAIGDITDRLMLTPVAINEGAALVDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLIEEV-  384 (495)
T ss_dssp             BCTTSSBCCCTTCBCSSTTEEECGGGGCSCCCHHHHHHHHHHHHHHHHSSCCCCCCCSSCEEEECCSSCEEEEECCHHH-
T ss_pred             CCCCCCEEECCCCccCCCCEEEEeccCCCccCHHHHHHHHHHHHHHhcCCCCCcCCCCCCCEEEECCCCeEEEeCCHHH-
Confidence            45567788999999999999999998432  1   12222   4444432 2235677889999999999999998776 


Q ss_pred             CCcccccccccCCCcEEEEeeccCccchhhhcCCCcce-EEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHH
Q psy14927        440 TDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGF-VKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCED  518 (1074)
Q Consensus       440 ~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~-~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~  518 (1074)
                              +++.+.++.+.+.+|..++|++..+.+.|+ +|+++++++++|||+|++|++++|+|+.+++||+.+.|+++
T Consensus       385 --------a~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~  456 (495)
T 2wpf_A          385 --------AAKEFEKVAVYMSSFTPLMHNISGSKYKKFVAKIVTNHSDGTVLGVHLLGDGAPEIIQAVGVCLRLNAKISD  456 (495)
T ss_dssp             --------HHHHSSEEEEEEEEECCTHHHHHSCTTCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHH
T ss_pred             --------HHhcCCCEEEEEEecCchhhhhhcCCCcEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHH
Confidence                    555566788999999999999999899999 99999999999999999999999999999999999999999


Q ss_pred             HhhhcccCCcccccccccc
Q psy14927        519 VARTCHAHPTVCVEKNDTL  537 (1074)
Q Consensus       519 l~~~~~~hPt~s~e~~~~~  537 (1074)
                      |..++++|||+++.+....
T Consensus       457 l~~~~~~hPt~~e~~~~~~  475 (495)
T 2wpf_A          457 FYNTIGVHPTSAEELCSMR  475 (495)
T ss_dssp             HHHSCCCSSCSGGGGGSCC
T ss_pred             HhhcccCCCChHHHHHHHH
Confidence            9999999999998875544

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=99.49  E-value=3.2e-14  Score=170.48  Aligned_cols=156  Identities=19%  Similarity=0.188  Sum_probs=134.0

Q ss_pred             HhhhhhccccccccccCCceEEeccchhhc-----cHHHH---hcccccc-ccccccccccccccccCCcceEEEEeccC
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWTLL-----SLARV---LEGIEYK-VGKFPFAANSRAKTNNDTDGFVKVLGDKL  439 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (1074)
                      +++.+.++.|+++||+..+||..||..-+.     ...|+   ..++... ...+++..+|..+..+++.+.+++++.. 
T Consensus       293 ~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~-  371 (499)
T 1xdi_A          293 LGRGNYLTVDRVSRTLATGIYAAGDCTGLLPLASVAAMQGRIAMYHALGEGVSPIRLRTVAATVFTRPEIAAVGVPQSV-  371 (499)
T ss_dssp             CBTTTBCCCCSSSBCSSTTEEECSGGGTSCSCHHHHHHHHHHHHHHHTTCCCCCCCGGGCEEEECSSSEEEEEESCHHH-
T ss_pred             ECCCCCEEECCCcccCCCCEEEEeccCCCcccHHHHHHHHHHHHHHhcCCCCccCCCCCCcEEEEecCCceEeCCCHHH-
Confidence            456677889999999999999999984321     12222   4455443 2456677889999999999999988776 


Q ss_pred             CCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHH
Q psy14927        440 TDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDV  519 (1074)
Q Consensus       440 ~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l  519 (1074)
                              ++..|+++.+.++++..++|+...+++.||+|+++++++|+|||+|++|+.++|+|+.+++||+.+.|+++|
T Consensus       372 --------a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l  443 (499)
T 1xdi_A          372 --------IDAGSVAARTIMLPLRTNARAKMSEMRHGFVKIFCRRSTGVVIGGVVVAPIASELILPIAVAVQNRITVNEL  443 (499)
T ss_dssp             --------HHHTSSCEEEEEEESTTSHHHHHTTCSSCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHH
T ss_pred             --------HHhCCCCEEEEEEecCcccceeecCCCceEEEEEEECCCCEEEEEEEECCchHHHHHHHHHHHHCCCCHHHH
Confidence                    777899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcccCCcccccc
Q psy14927        520 ARTCHAHPTVCVEK  533 (1074)
Q Consensus       520 ~~~~~~hPt~s~e~  533 (1074)
                      ..++++|||+++.+
T Consensus       444 ~~~~~~~Pt~~e~~  457 (499)
T 1xdi_A          444 AQTLAVYPSLSGSI  457 (499)
T ss_dssp             HTSBCCSSSTHHHH
T ss_pred             hcccccCCCchHHH
Confidence            99999999999765

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=99.48  E-value=6e-14  Score=167.12  Aligned_cols=158  Identities=18%  Similarity=0.196  Sum_probs=130.5

Q ss_pred             HhhhhhccccccccccCCceEEeccchhh--c---cHHH---Hhcccccc----ccccccccccccccccCCcceEEEEe
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWTL--L---SLAR---VLEGIEYK----VGKFPFAANSRAKTNNDTDGFVKVLG  436 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (1074)
                      +++.+.+..|+++|||..+||..||..-+  +   ...|   |..++...    .+..++..+|..+..+++.+.++++.
T Consensus       298 ~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~vGl~e  377 (479)
T 2hqm_A          298 LNSHDQIIADEYQNTNVPNIYSLGDVVGKVELTPVAIAAGRKLSNRLFGPEKFRNDKLDYENVPSVIFSHPEAGSIGISE  377 (479)
T ss_dssp             BCTTSCBCCCTTCBCSSTTEEECGGGTTSSCCHHHHHHHHHHHHHHHHSCGGGTTCCCCCTTCCEEECCSSCEEEEECCH
T ss_pred             ECCCCCEeECCCCccCCCCEEEEEecCCCcccHHHHHHHHHHHHHHhcCCCccCcccCCCCCCCeEEECCCCeEEEeCCH
Confidence            45667788899999999999999998322  1   1222   24444332    23356677899999999999999887


Q ss_pred             ccCCCcccccccccC-C-CcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCC
Q psy14927        437 DKLTDKVLGVHIIGP-G-IEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGA  514 (1074)
Q Consensus       437 ~~~~~~~lg~~~~~~-g-~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~  514 (1074)
                      ..         +++. | .++++...++..+++++..+.+.|++|+++++++|+|||+|++|++++|+|+.+++||+.+.
T Consensus       378 ~~---------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~  448 (479)
T 2hqm_A          378 KE---------AIEKYGKENIKVYNSKFTAMYYAMLSEKSPTRYKIVCAGPNEKVVGLHIVGDSSAEILQGFGVAIKMGA  448 (479)
T ss_dssp             HH---------HHHHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTC
T ss_pred             HH---------HHhcCCCCcEEEEEEeccHHHHHhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCC
Confidence            66         4444 3 35899999999999999888999999999999999999999999999999999999999999


Q ss_pred             CHHHHhhhcccCCcccccccc
Q psy14927        515 SCEDVARTCHAHPTVCVEKND  535 (1074)
Q Consensus       515 ~~~~l~~~~~~hPt~s~e~~~  535 (1074)
                      |+++|.+++++|||++|.+..
T Consensus       449 t~~~l~~~~~~hPt~~e~~~~  469 (479)
T 2hqm_A          449 TKADFDNCVAIHPTSAEELVT  469 (479)
T ss_dssp             BHHHHHTSCCCSSCSGGGGGS
T ss_pred             CHHHHhhCcCCCCChHHHHHH
Confidence            999999999999999988743

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=99.48  E-value=3e-14  Score=171.53  Aligned_cols=158  Identities=16%  Similarity=0.116  Sum_probs=134.5

Q ss_pred             HhhhhhccccccccccCCceEEeccchhh--------ccHHHHhccccccccccccccccccccccCCcceEEEEeccCC
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWTL--------LSLARVLEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLT  440 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (1074)
                      +++.+.+..|+++||+..+||..||..-+        .....|+.++......+.+..+|..+..+++.+.+++++..  
T Consensus       329 ~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~vG~~e~~--  406 (523)
T 1mo9_A          329 LGPKGEVLVNEYLQTSVPNVYAVGDLIGGPMEMFKARKSGCYAARNVMGEKISYTPKNYPDFLHTHYEVSFLGMGEEE--  406 (523)
T ss_dssp             BCTTSCBCCCTTSBCSSTTEEECGGGGCSSCSHHHHHHHHHHHHHHHTTCCCCCCCCSCCEEEESSSEEEEEECCHHH--
T ss_pred             cCCCCCEEECCCCccCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEECCCceEEEeCCHHH--
Confidence            45677789999999999999999998432        12222355555444445567788899999999999998777  


Q ss_pred             CcccccccccCCCcEEEEeeccCc--------------cchhhhc--CCCcceEEEEEECCCCcEEEEEEeCCChhHHHH
Q psy14927        441 DKVLGVHIIGPGIEYKVGKFPFAA--------------NSRAKTN--NDTDGFVKVLGDKLTDKVLGVHIIGPAAGELIN  504 (1074)
Q Consensus       441 ~~~lg~~~~~~g~~~~v~~~~~~~--------------~~ra~~~--~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~  504 (1074)
                             ++..|+++.+...++.+              ++|+...  +++.||+|+++++++++|||+|++|++++|+|+
T Consensus       407 -------a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~  479 (523)
T 1mo9_A          407 -------ARAAGHEIVTIKMPPDTENGLNVALPASDRTMLYAFGKGTAHMSGFQKIVIDAKTRKVLGAHHVGYGAKDAFQ  479 (523)
T ss_dssp             -------HHHTTCCEEEEEESCCSTTTTCSSCSCCTTTHHHHHSTTTGGGGCEEEEEEETTTCBEEEEEEEESSCHHHHH
T ss_pred             -------HHhCCCCEEEEEEecccccccccccccccccccceEEeecCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHH
Confidence                   77789999999999988              8899988  889999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCHHHHhhh--cccCCcccccccc
Q psy14927        505 EAVLAMEYGASCEDVART--CHAHPTVCVEKND  535 (1074)
Q Consensus       505 ~~a~a~~~~~~~~~l~~~--~~~hPt~s~e~~~  535 (1074)
                      .+++||+.+.|+++|.++  +|+|||+++.+..
T Consensus       480 ~~~~ai~~~~t~~~l~~~~~~~~~Pt~~e~~~~  512 (523)
T 1mo9_A          480 YLNVLIKQGLTVDELGDMDELFLNPTHFIQLSR  512 (523)
T ss_dssp             HHHHHHHTTCBHHHHHTSCCCSSCSCCHHHHHH
T ss_pred             HHHHHHHCCCCHHHHHhCCcceECCCHHHHHHH
Confidence            999999999999999999  9999999987643

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=99.48  E-value=5.7e-14  Score=167.69  Aligned_cols=160  Identities=16%  Similarity=0.175  Sum_probs=133.3

Q ss_pred             HhhhhhccccccccccCCceEEeccchhh--c---cHHH---Hhcccccc-ccccccccccccccccCCcceEEEEeccC
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWTL--L---SLAR---VLEGIEYK-VGKFPFAANSRAKTNNDTDGFVKVLGDKL  439 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (1074)
                      +++.+.+..|+.+||+..+||..||..-+  +   ...|   |..++... ....++..+|..+..+++.+.+++++.. 
T Consensus       302 ~~~~G~I~Vd~~~~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~-  380 (490)
T 1fec_A          302 VAKNGAIKVDAYSKTNVDNIYAIGDVTDRVMLTPVAINEGAAFVDTVFANKPRATDHTKVACAVFSIPPMGVCGYVEED-  380 (490)
T ss_dssp             BCTTSCBCCCTTCBCSSTTEEECGGGGCSCCCHHHHHHHHHHHHHHHHSSCCCCCCCSSCCEEECCSSCEEEEECCHHH-
T ss_pred             CCCCCCEEECCCCccCCCCEEEEeccCCCccCHHHHHHHHHHHHHHhcCCCCCcCCCCCccEEEECCCCeEEEeCCHHH-
Confidence            45567788999999999999999998532  1   1222   24444432 2235677889999999999999998766 


Q ss_pred             CCcccccccccCCCcEEEEeeccCccchhhhcCCCcceE-EEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHH
Q psy14927        440 TDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFV-KVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCED  518 (1074)
Q Consensus       440 ~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~-Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~  518 (1074)
                              +++.+.++.+.+.+|..++|++..+.+.|++ |+++++++++|||+|++|++++|+|+.+++||+.+.|+++
T Consensus       381 --------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~  452 (490)
T 1fec_A          381 --------AAKKYDQVAVYESSFTPLMHNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPEIIQSVAICLKMGAKISD  452 (490)
T ss_dssp             --------HHHHCSEEEEEEEEECCHHHHHHSCTTCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHH
T ss_pred             --------HHhcCCCEEEEEeecChhhhhhhcCCCeEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHH
Confidence                    5455678899999999999999998999999 9999999999999999999999999999999999999999


Q ss_pred             HhhhcccCCcccccccccc
Q psy14927        519 VARTCHAHPTVCVEKNDTL  537 (1074)
Q Consensus       519 l~~~~~~hPt~s~e~~~~~  537 (1074)
                      |..++++|||+++.+....
T Consensus       453 l~~~~~~hPt~~e~~~~~~  471 (490)
T 1fec_A          453 FYNTIGVHPTSAEELCSMR  471 (490)
T ss_dssp             HHTSCCCSSCSGGGGGSCC
T ss_pred             HhccccCCCCHHHHHHHHH
Confidence            9999999999998875443

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=99.47  E-value=5.8e-14  Score=165.88  Aligned_cols=157  Identities=19%  Similarity=0.160  Sum_probs=130.5

Q ss_pred             HhhhhhccccccccccCCceEEeccchhh--c---cHHHH---hccccccc-cc-cccccccccccccCCcceEEEEecc
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWTL--L---SLARV---LEGIEYKV-GK-FPFAANSRAKTNNDTDGFVKVLGDK  438 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~---~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~  438 (1074)
                      +++.+.++.|+++|||+.+||..||..-+  +   ...|+   ..++.... .. .++..+|..+..+++.+.+++++..
T Consensus       279 ~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~  358 (450)
T 1ges_A          279 TNEKGYIVVDKYQNTNIEGIYAVGDNTGAVELTPVAVAAGRRLSERLFNNKPDEHLDYSNIPTVVFSHPPIGTVGLTEPQ  358 (450)
T ss_dssp             BCTTSCBCCCTTSBCSSTTEEECSGGGTSCCCHHHHHHHHHHHHHHHHTTCTTCCCCCSSCCEEECCSSCEEEEECCHHH
T ss_pred             ECCCCCEeECCCCccCCCCEEEEeccCCCCccHHHHHHHHHHHHHHHcCCCCcccCCCCCCCeEEECCCceEEEeCCHHH
Confidence            45677788999999999999999998421  1   12222   44444322 22 4677889999999999999987766


Q ss_pred             CCCcccccccccC-C-CcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCH
Q psy14927        439 LTDKVLGVHIIGP-G-IEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASC  516 (1074)
Q Consensus       439 ~~~~~lg~~~~~~-g-~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~  516 (1074)
                               ++.. | .++.+...++..+++++..+.+.|++|+++++++++|||+|++|++++|+|+.+++|++.+.|+
T Consensus       359 ---------a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~  429 (450)
T 1ges_A          359 ---------AREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATK  429 (450)
T ss_dssp             ---------HHHHHCGGGEEEEEEEEECHHHHTSSSCCEEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBH
T ss_pred             ---------HHhcCCCCcEEEEEEECchhhHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCH
Confidence                     5544 4 5799999999999999988899999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcccCCccccccc
Q psy14927        517 EDVARTCHAHPTVCVEKN  534 (1074)
Q Consensus       517 ~~l~~~~~~hPt~s~e~~  534 (1074)
                      ++|.+++++|||++|.+.
T Consensus       430 ~~l~~~~~~hPt~~e~~~  447 (450)
T 1ges_A          430 KDFDNTVAIHPTAAEEFV  447 (450)
T ss_dssp             HHHHTSCCCSSCSGGGGG
T ss_pred             HHHhcCccCCCChHHHHH
Confidence            999999999999998763

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=99.45  E-value=9.5e-14  Score=165.67  Aligned_cols=156  Identities=16%  Similarity=0.164  Sum_probs=125.5

Q ss_pred             HhhhhhccccccccccCCceEEeccchhh------ccHHHH---hcccccc-ccccccccccccccccCCcceEEEEecc
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWTL------LSLARV---LEGIEYK-VGKFPFAANSRAKTNNDTDGFVKVLGDK  438 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (1074)
                      +++ +.+..|+.+||++.+||..||...|      ....|+   ..++... ...+++..+|.+++.+++.+.|++++..
T Consensus       303 ~~~-G~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vGlte~~  381 (483)
T 3dgh_A          303 VQK-DKIPVDSQEATNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLYGGSTQRMDYKDVATTVFTPLEYACVGLSEED  381 (483)
T ss_dssp             CBT-TBBCCCTTCBCSSTTEEECSTTBTTSCCCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEEECSSSEEEEEECCHHH
T ss_pred             ccC-CEEEECcCCccCCCCEEEEEcccCCCCccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEECCCccEEEeCCHHH
Confidence            455 7788899999999999999998532      122333   4444332 2245678899999999999999999877


Q ss_pred             CCCcccccccccC-C-CcEEEEeeccCccchhhhc-CCCcceEEEEEECC-CCcEEEEEEeCCChhHHHHHHHHHHHcCC
Q psy14927        439 LTDKVLGVHIIGP-G-IEYKVGKFPFAANSRAKTN-NDTDGFVKVLGDKL-TDKVLGVHIIGPAAGELINEAVLAMEYGA  514 (1074)
Q Consensus       439 ~~~~~lg~~~~~~-g-~~~~v~~~~~~~~~ra~~~-~~~~G~~Kli~~~~-~~~ilG~~iiG~~a~eli~~~a~a~~~~~  514 (1074)
                               ++++ | ..+.+...+|..+.++... +.+.||+|++++++ |++|||+|++|++++|+|+.+++||+.++
T Consensus       382 ---------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~  452 (483)
T 3dgh_A          382 ---------AVKQFGADEIEVFHGYYKPTEFFIPQKSVRYCYLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAAALKSGL  452 (483)
T ss_dssp             ---------HHHHHCGGGEEEEEEECCCGGGTTTTCCCTTCEEEEEEESSTTCBEEEEEEEETTHHHHHHHHHHHHHTTC
T ss_pred             ---------HHhhCCCCCEEEEEEeecchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCC
Confidence                     5544 3 3577777777776665443 46889999999997 99999999999999999999999999999


Q ss_pred             CHHHHhhhcccCCccccccc
Q psy14927        515 SCEDVARTCHAHPTVCVEKN  534 (1074)
Q Consensus       515 ~~~~l~~~~~~hPt~s~e~~  534 (1074)
                      |+++|.+++|+|||++|.+.
T Consensus       453 t~~~l~~~~~~hPt~~e~~~  472 (483)
T 3dgh_A          453 TINTLINTVGIHPTTAEEFT  472 (483)
T ss_dssp             BHHHHHTSCCCSSCSGGGGG
T ss_pred             CHHHHhhcccCCCChHHHHH
Confidence            99999999999999998874

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=99.45  E-value=9.5e-14  Score=165.47  Aligned_cols=156  Identities=43%  Similarity=0.619  Sum_probs=134.4

Q ss_pred             HhhhhhccccccccccCCceEEeccchhh-----ccHHH---HhccccccccccccccccccccccCCcceEEEEeccCC
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWTL-----LSLAR---VLEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLT  440 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (1074)
                      +++.+.+..|+.+||+..+||..||..-+     ....|   |..++......+++..+|...+.+++.+.+++++.+  
T Consensus       301 ~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~--  378 (478)
T 1v59_A          301 VDKRGRLVIDDQFNSKFPHIKVVGDVTFGPMLAHKAEEEGIAAVEMLKTGHGHVNYNNIPSVMYSHPEVAWVGKTEEQ--  378 (478)
T ss_dssp             BCTTSCBCCCTTSBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHSCCCCCTTSCCEEECSSSEEEEEECCHHH--
T ss_pred             eCCCCCEeECcCCccCCCCEEEeeccCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCCEEEEcCCcEEEEECCHHH--
Confidence            45567788999999999999999998432     11222   244454444457788899999999999999998877  


Q ss_pred             CcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHHh
Q psy14927        441 DKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVA  520 (1074)
Q Consensus       441 ~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l~  520 (1074)
                             ++..|+++.+..+++..++|+...+++.|++|+++++++++|||+|++|++++++|+.++++|+.+.|+++|.
T Consensus       379 -------a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~~~~~~l~  451 (478)
T 1v59_A          379 -------LKEAGIDYKIGKFPFAANSRAKTNQDTEGFVKILIDSKTERILGAHIIGPNAGEMIAEAGLALEYGASAEDVA  451 (478)
T ss_dssp             -------HHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHH
T ss_pred             -------HHHcCCCEEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHh
Confidence                   7777899999999999999999888899999999999999999999999999999999999999999999999


Q ss_pred             hhcccCCcccccc
Q psy14927        521 RTCHAHPTVCVEK  533 (1074)
Q Consensus       521 ~~~~~hPt~s~e~  533 (1074)
                      .++++|||+++.+
T Consensus       452 ~~~~~~Pt~~e~~  464 (478)
T 1v59_A          452 RVCHAHPTLSEAF  464 (478)
T ss_dssp             TSCCCTTCTTHHH
T ss_pred             hCCCCCCCHHHHH
Confidence            9999999999765

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=99.45  E-value=7.5e-14  Score=166.72  Aligned_cols=158  Identities=18%  Similarity=0.181  Sum_probs=126.9

Q ss_pred             Hh-hhhhccccccccccCCceEEeccchhh------ccHHHH---hcccccc-ccccccccccccccccCCcceEEEEec
Q psy14927        369 VD-KYLEMKRNQSFRSSNTDIILPVEKWTL------LSLARV---LEGIEYK-VGKFPFAANSRAKTNNDTDGFVKVLGD  437 (1074)
Q Consensus       369 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (1074)
                      ++ +.+.+..|+.+||+..+||..||...+      ....|+   ..++... ....++..+|.+++.+++.+.|++++.
T Consensus       301 ~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vGlte~  380 (488)
T 3dgz_A          301 TNPKNQKIIVDAQEATSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFGKSSTLMDYSNVPTTVFTPLEYGCVGLSEE  380 (488)
T ss_dssp             BCSSSCCBCCCTTSBCSSTTEEECGGGBTTCCCCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEEECSSSEEEEEECCHH
T ss_pred             ecCCCCeEeECCCCccCCCCEEEeEEecCCCCcchhHHHHHHHHHHHHHcCCCCccCCCCCCCEEEECCCCeEEEeCCHH
Confidence            45 567788899999999999999998422      122222   4444432 233567889999999999999999987


Q ss_pred             cCCCcccccccccC-C-CcEEEEeeccCccchhhhcC-CCcceEEEEEE-CCCCcEEEEEEeCCChhHHHHHHHHHHHcC
Q psy14927        438 KLTDKVLGVHIIGP-G-IEYKVGKFPFAANSRAKTNN-DTDGFVKVLGD-KLTDKVLGVHIIGPAAGELINEAVLAMEYG  513 (1074)
Q Consensus       438 ~~~~~~lg~~~~~~-g-~~~~v~~~~~~~~~ra~~~~-~~~G~~Kli~~-~~~~~ilG~~iiG~~a~eli~~~a~a~~~~  513 (1074)
                      .         +++. | ..+.+.+.+|....++.... .+.||+|+++| ++|++|||+|++|++++|+|+.+++||+.+
T Consensus       381 ~---------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~  451 (488)
T 3dgz_A          381 E---------AVALHGQEHVEVYHAYYKPLEFTVADRDASQCYIKMVCMREPPQLVLGLHFLGPNAGEVTQGFALGIKCG  451 (488)
T ss_dssp             H---------HHHHHCGGGEEEEEEECCCHHHHHTTCCCTTCEEEEEEESSTTCBEEEEEEEETTHHHHHHHHHHHHHTT
T ss_pred             H---------HHhhCCCCcEEEEEccccchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            6         5543 3 36778887887777766544 48899999999 589999999999999999999999999999


Q ss_pred             CCHHHHhhhcccCCcccccccc
Q psy14927        514 ASCEDVARTCHAHPTVCVEKND  535 (1074)
Q Consensus       514 ~~~~~l~~~~~~hPt~s~e~~~  535 (1074)
                      +|+++|.+++|+|||++|.+..
T Consensus       452 ~t~~~l~~~~~~hPt~~e~~~~  473 (488)
T 3dgz_A          452 ASYAQVMQTVGIHPTCSEEVVK  473 (488)
T ss_dssp             CBHHHHHTSCCCSSCSTHHHHT
T ss_pred             CCHHHHhccccCCCChHHHHHH
Confidence            9999999999999999988743

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=99.44  E-value=1.4e-13  Score=163.19  Aligned_cols=158  Identities=16%  Similarity=0.142  Sum_probs=131.1

Q ss_pred             HhhhhhccccccccccCCceEEeccchhh--c---cHHH---Hhccccccc-cc-cccccccccccccCCcceEEEEecc
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWTL--L---SLAR---VLEGIEYKV-GK-FPFAANSRAKTNNDTDGFVKVLGDK  438 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~---~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~  438 (1074)
                      +++.+.++.|+++|||..+||..||..-+  +   ...|   |..++.... .. .++..+|..+..+++.++++++...
T Consensus       278 ~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~~~~~~~~a~vGl~e~~  357 (463)
T 2r9z_A          278 VQSNGMVPTDAYQNTNVPGVYALGDITGRDQLTPVAIAAGRRLAERLFDGQSERKLDYDNIPTVVFAHPPLSKVGLSEPE  357 (463)
T ss_dssp             CCTTSCCCCCTTSBCSSTTEEECGGGGTSCCCHHHHHHHHHHHHHHHHSCCTTCCCCCSSCCEEECCSSCEEEEECCHHH
T ss_pred             cCCCCCEeECCCCccCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcCCCCcccCCCCCCCEEEeCCCCeEEEcCCHHH
Confidence            45677788999999999999999998421  1   1222   244443322 12 5667889999999999999987765


Q ss_pred             CCCcccccccccC-CCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHH
Q psy14927        439 LTDKVLGVHIIGP-GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCE  517 (1074)
Q Consensus       439 ~~~~~lg~~~~~~-g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~  517 (1074)
                               ++.+ |.++.+...++..+.+++..+.+.|++|+++++++++|||+|++|++++|+|+.+++|++.+.|++
T Consensus       358 ---------a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~  428 (463)
T 2r9z_A          358 ---------ARERLGDVLTVYETSFTPMRYALNEHGPKTAMKLVCAGPEQRVVGVHVIGDGADEMLQGFAVAVKMGATKA  428 (463)
T ss_dssp             ---------HHHHHCSCEEEEEEEECCGGGTTSSSCCCEEEEEEEETTTTEEEEEEEESTTGGGTSHHHHHHHHTTCBHH
T ss_pred             ---------HHhcCCCCEEEEEEEcccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHH
Confidence                     4444 467899999999999999888999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcccCCcccccccc
Q psy14927        518 DVARTCHAHPTVCVEKND  535 (1074)
Q Consensus       518 ~l~~~~~~hPt~s~e~~~  535 (1074)
                      +|.+++++|||+++.+..
T Consensus       429 ~l~~~~~~hPt~~e~~~~  446 (463)
T 2r9z_A          429 DFDNTVAIHPGSAEELVT  446 (463)
T ss_dssp             HHHTSCCCSSSSGGGGGC
T ss_pred             HHhcCccCCCCHHHHHHH
Confidence            999999999999998754

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.43  E-value=1.6e-13  Score=162.41  Aligned_cols=154  Identities=27%  Similarity=0.295  Sum_probs=131.1

Q ss_pred             hhhhhccccccccccCCceEEeccchhhc--------cHHHHhccccccccccccccccccccccCCcceEEEEeccCCC
Q psy14927        370 DKYLEMKRNQSFRSSNTDIILPVEKWTLL--------SLARVLEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTD  441 (1074)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (1074)
                      ++. .+..++.+||+..+||..||..-+.        ....|+.++......+++..+|..+..+++.+.+++++..   
T Consensus       283 ~~~-~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~p~~a~vG~~e~~---  358 (458)
T 1lvl_A          283 NGA-AIAIDERCQTSMHNVWAIGDVAGEPMLAHRAMAQGEMVAEIIAGKARRFEPAAIAAVCFTDPEVVVVGKTPEQ---  358 (458)
T ss_dssp             ETT-EECCCTTCBCSSTTEEECGGGGCSSCCHHHHHHHHHHHHHHHTTCCCCCCCSCCCEEECSSSEEEEEECCHHH---
T ss_pred             cCC-EEeECCCCcCCCCCEEEeeccCCCcccHHHHHHHHHHHHHHhcCCCccCCCCCCCEEEECCCCeEEEeCCHHH---
Confidence            344 5788899999999999999984321        2222345554444456677888888999999999988776   


Q ss_pred             cccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHHhh
Q psy14927        442 KVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVAR  521 (1074)
Q Consensus       442 ~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l~~  521 (1074)
                            ++..|+++.+...++..++|+...+.++|++|+++|+++++|+|+|++|+.++|+|+.+++||+.+.|+++|..
T Consensus       359 ------a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kl~~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~~~~~l~~  432 (458)
T 1lvl_A          359 ------ASQQGLDCIVAQFPFAANGRAMSLESKSGFVRVVARRDNHLILGWQAVGVAVSELSTAFAQSLEMGACLEDVAG  432 (458)
T ss_dssp             ------HHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTGGGHHHHHHHHHHHTCBHHHHHT
T ss_pred             ------HHHcCCCEEEEEEECccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhh
Confidence                  77788999999999999999999899999999999999999999999999999999999999999999999999


Q ss_pred             hcccCCcccccc
Q psy14927        522 TCHAHPTVCVEK  533 (1074)
Q Consensus       522 ~~~~hPt~s~e~  533 (1074)
                      ++++|||+++.+
T Consensus       433 ~~~~~Pt~~e~~  444 (458)
T 1lvl_A          433 TIHAHPTLGEAV  444 (458)
T ss_dssp             SCCCTTCTTHHH
T ss_pred             CcCCCCCHHHHH
Confidence            999999999765

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=99.42  E-value=1.9e-13  Score=162.32  Aligned_cols=158  Identities=21%  Similarity=0.221  Sum_probs=133.3

Q ss_pred             HhhhhhccccccccccCCceEEeccchhh-----ccHHH---HhccccccccccccccccccccccCCcceEEEEeccCC
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWTL-----LSLAR---VLEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLT  440 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (1074)
                      +++.+.+..++.+||+..+||..||...+     ....|   |..++......+++..+|.....+++.+.+++....  
T Consensus       285 ~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~a~vG~~~~~--  362 (467)
T 1zk7_A          285 VNAQGAIVIDQGMRTSNPNIYAAGDCTDQPQFVYVAAAAGTRAAINMTGGDAALDLTAMPAVVFTDPQVATVGYSEAE--  362 (467)
T ss_dssp             BCTTSCBCCCTTCBCSSTTEEECSTTBSSCCCHHHHHHHHHHHHHHHTTCCCCCCCTTCEEEECSSSEEEEEECCHHH--
T ss_pred             CCCCCCEEECCCcccCCCCEEEEeccCCCcccHHHHHHHHHHHHHHHcCCCcccCCCCCCEEEecCCceEEEecCHHH--
Confidence            45667788999999999999999997332     11222   244454433456677788888889999998887766  


Q ss_pred             CcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHHh
Q psy14927        441 DKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVA  520 (1074)
Q Consensus       441 ~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l~  520 (1074)
                             ++..|+++.+...++..++|++..+++.||+|+++++++|+|||+|++|++++++|+.++++|+.+.|+++|.
T Consensus       363 -------a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~~~~~~l~  435 (467)
T 1zk7_A          363 -------AHHDGIETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSHRLIGVQAVAPEAGELIQTAALAIRNRMTVQELA  435 (467)
T ss_dssp             -------HHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHH
T ss_pred             -------HHhcCCCeEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHh
Confidence                   6677899999999999999999988999999999999999999999999999999999999999999999999


Q ss_pred             hhcccCCcccccccc
Q psy14927        521 RTCHAHPTVCVEKND  535 (1074)
Q Consensus       521 ~~~~~hPt~s~e~~~  535 (1074)
                      +++++|||+++.+..
T Consensus       436 ~~~~~~pt~~e~~~~  450 (467)
T 1zk7_A          436 DQLFPYLTMVEGLKL  450 (467)
T ss_dssp             TSCCCTTSTTHHHHH
T ss_pred             cCccCCCCHHHHHHH
Confidence            999999999987643

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=99.39  E-value=3.6e-13  Score=159.36  Aligned_cols=155  Identities=30%  Similarity=0.445  Sum_probs=131.3

Q ss_pred             hhhhhccccccccccCCceEEeccchhhc--------cHHHHhccccccccccccccccccccccCCcceEEEEeccCCC
Q psy14927        370 DKYLEMKRNQSFRSSNTDIILPVEKWTLL--------SLARVLEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTD  441 (1074)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (1074)
                      ++.+.+..++.+||+..+||+.||...+.        ....|..++......+++...|..+..+++.+.+++++..   
T Consensus       279 ~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~a~~G~~~~~---  355 (455)
T 2yqu_A          279 DERGRIPVDEHLRTRVPHIYAIGDVVRGPMLAHKASEEGIAAVEHMVRGFGHVDYQAIPSVVYTHPEIAAVGYTEEE---  355 (455)
T ss_dssp             CTTSCCCCCTTSBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHSCCCCCGGGCCEEECSSSEEEEEECCHHH---
T ss_pred             CCCCcEeECCCcccCCCCEEEEecCCCCccCHHHHHHhHHHHHHHHcCCCccCCCCCCCEEEEcCCceEEEECCHHH---
Confidence            44566888999999999999999984332        2222244444434445667788888999999999887766   


Q ss_pred             cccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHHhh
Q psy14927        442 KVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVAR  521 (1074)
Q Consensus       442 ~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l~~  521 (1074)
                            ++..|+++.+...++..++|+...+++.|++|+++++++|+|+|++++|+.++|+|+.++++++.|.++++|..
T Consensus       356 ------a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~~~~  429 (455)
T 2yqu_A          356 ------LKAQGIPYKVGKFPYSASGRARAMGETEGFIKVLAHAKTDRILGVHGIGARVGDVLAEAALALFFKASAEDLGR  429 (455)
T ss_dssp             ------HHHHTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHH
T ss_pred             ------HHHcCCCEEEEEEEcccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhh
Confidence                  67778999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccCCcccccc
Q psy14927        522 TCHAHPTVCVEK  533 (1074)
Q Consensus       522 ~~~~hPt~s~e~  533 (1074)
                      ++++|||+++.+
T Consensus       430 ~~~~~Pt~~e~~  441 (455)
T 2yqu_A          430 APHAHPSLSEIL  441 (455)
T ss_dssp             SCCCSSCTHHHH
T ss_pred             cccCCCCHHHHH
Confidence            999999999765

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=99.39  E-value=7.1e-13  Score=156.71  Aligned_cols=153  Identities=14%  Similarity=0.112  Sum_probs=121.8

Q ss_pred             HHhhhhhccccccccccCCceEEeccchhh------------c---cHHH---Hhccccccccccc--cccccccccccC
Q psy14927        368 EVDKYLEMKRNQSFRSSNTDIILPVEKWTL------------L---SLAR---VLEGIEYKVGKFP--FAANSRAKTNND  427 (1074)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~---~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~  427 (1074)
                      ++++++.+..|+.+|||+.+||..||..-+            +   ...|   |..++......++  ...+|..++ ++
T Consensus       254 ~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~-~~  332 (452)
T 3oc4_A          254 QRNLDQTIAVDAYLQTSVPNVFAIGDCISVMNEPVAETFYAPLVNNAVRTGLVVANNLEEKTHRFIGSLRTMGTKVG-DY  332 (452)
T ss_dssp             CBCTTSCBCCCTTCBCSSTTEEECGGGBCEEEGGGTEEECCCCHHHHHHHHHHHTTSSSSCCCCCCCCCCCEEEEET-TE
T ss_pred             ccCCCCCEEECcCccCCCCCEEEEEeeEEeccccCCceeecchHHHHHHHHHHHHHHhcCCCccCCCccccEEEEEc-Ce
Confidence            356778899999999999999999998432            1   1222   2455544333332  345566666 56


Q ss_pred             CcceEEEEeccCCCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCC-ChhHHHHHH
Q psy14927        428 TDGFVKVLGDKLTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGP-AAGELINEA  506 (1074)
Q Consensus       428 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~-~a~eli~~~  506 (1074)
                      +.+.+++++.+         +++.|+++.+..+++...  + ..+.+.||+|++++++|++|||+|++|+ +++|+|+.+
T Consensus       333 ~~a~vG~te~~---------a~~~g~~~~~~~~~~~~~--~-~~~~~~~~~kli~~~~~~~ilG~~~~g~~~a~e~i~~~  400 (452)
T 3oc4_A          333 YLASTGLTETE---------GLFFPQTLASIIVRQPAP--P-LQHGTEILGKLIYDKVTQRVLGAQLCSKNNCLEKINTL  400 (452)
T ss_dssp             EEEEEECCSGG---------GGGSSSCEEEEEEEEECT--T-TTCSCEEEEEEEEETTTCBEEEEEEEESSCCTHHHHHH
T ss_pred             eEEEecCCHHH---------HHHCCCceEEEEEecCCc--c-CCCCCeEEEEEEEECCCCEEEEEEEEeCCCHHHHHHHH
Confidence            88889988766         777889999998887554  4 4567899999999999999999999999 799999999


Q ss_pred             HHHHHcCCCHHHHhhh-cccCCcccccc
Q psy14927        507 VLAMEYGASCEDVART-CHAHPTVCVEK  533 (1074)
Q Consensus       507 a~a~~~~~~~~~l~~~-~~~hPt~s~e~  533 (1074)
                      ++||+.+.|+++|..+ +++|||+++..
T Consensus       401 ~~ai~~~~t~~~l~~~~~~~~P~~~~~~  428 (452)
T 3oc4_A          401 ALSIQTGQTLTDLLQKDYFYQPSLTNIY  428 (452)
T ss_dssp             HHHHHTTCBHHHHHTCCCCCCTTTSCSS
T ss_pred             HHHHHcCCCHHHHHhhHhccCCCCCCch
Confidence            9999999999999998 89999999765

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=99.36  E-value=9e-13  Score=154.87  Aligned_cols=153  Identities=19%  Similarity=0.139  Sum_probs=121.4

Q ss_pred             HhhhhhccccccccccCCceEEeccchhh------------------ccHHHHhcccccccc-cc-ccccccccccccCC
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWTL------------------LSLARVLEGIEYKVG-KF-PFAANSRAKTNNDT  428 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~  428 (1074)
                      +++++.++.|+++|||..|||..||....                  .....|++++..... .+ ++..+|.+...+++
T Consensus       252 ~~~~G~I~vd~~~~Ts~p~IyA~GDva~~~~~~~~~~~~~~~a~~A~~~g~~~a~ni~g~~~~~~~~~~~~~~~~~~~p~  331 (437)
T 4eqs_A          252 LDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYT  331 (437)
T ss_dssp             CCTTSCEECCTTCBCSSTTEEECGGGEEEEBSSSSSEECCCSHHHHHHHHHHHHHHHHSCTTCCCCCBCCCEEEEETTEE
T ss_pred             hccCCcEecCCCccCCCCCEEEEEEccCcccccCCccccchhHHHHHHHHHHHHHHHcCCCCcccccceeEEeeeeccce
Confidence            57788899999999999999999998321                  122233556654332 22 45667888999999


Q ss_pred             cceEEEEeccCCCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCC-hhHHHHHHH
Q psy14927        429 DGFVKVLGDKLTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPA-AGELINEAV  507 (1074)
Q Consensus       429 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~-a~eli~~~a  507 (1074)
                      .+.|++++.+         +++.|  +++.++++...+++. .+++.||+|+++|++|++|||+|++|++ ++|+|+.++
T Consensus       332 ia~vGlte~~---------a~~~~--~~~~~~~~~~~~~~~-~~~~~g~~Kli~d~~~~~ilGa~~~g~~~a~e~i~~~~  399 (437)
T 4eqs_A          332 FASVGVKPNE---------LKQFD--YKMVEVTQGAHANYY-PGNSPLHLRVYYDTSNRQILRAAAVGKEGADKRIDVLS  399 (437)
T ss_dssp             EEEEESCGGG---------GGGSC--EEEEEEEEESSCTTS-SSCCEEEEEEEEETTTCBEEEEEEEESSSHHHHHHHHH
T ss_pred             EEEeeCCHHH---------HHhCC--ceEEEEecCCchhhc-CCCCcEEEEEEEECCCCEEEEEEEECcCCHHHHHHHHH
Confidence            9999998776         55555  556666766666554 4788999999999999999999999985 999999999


Q ss_pred             HHHHcCCCHHHHhhhccc-CCcccccc
Q psy14927        508 LAMEYGASCEDVARTCHA-HPTVCVEK  533 (1074)
Q Consensus       508 ~a~~~~~~~~~l~~~~~~-hPt~s~e~  533 (1074)
                      +||+.++|+++|.+++++ ||++++..
T Consensus       400 ~ai~~~~t~~~l~~~~~~yhP~~s~~~  426 (437)
T 4eqs_A          400 MAMMNQLTVDELTEFEVAFAPPYSHPK  426 (437)
T ss_dssp             HHHHTTCBGGGGGGCCCCCCTTTCCSS
T ss_pred             HHHHcCCcHHHHhcCccccCCCCCchH
Confidence            999999999999999876 89998653

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.36  E-value=1.1e-12  Score=156.94  Aligned_cols=155  Identities=17%  Similarity=0.146  Sum_probs=127.1

Q ss_pred             hhhhccccccccccCCceEEeccchh---------------------------------h--cc----HHHH---hcccc
Q psy14927        371 KYLEMKRNQSFRSSNTDIILPVEKWT---------------------------------L--LS----LARV---LEGIE  408 (1074)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~--~~----~~~~---~~~~~  408 (1074)
                      +.+.+..|+.+|||..+||..||...                                 +  ..    ..|+   +.++.
T Consensus       290 ~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~  369 (500)
T 1onf_A          290 NNNYIVVDENQRTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLF  369 (500)
T ss_dssp             SSSCEEECTTCBCSSSSEEECSTTEEEC------------------------------CBCCCCHHHHHHHHHHHHHHHH
T ss_pred             cCCEEEECCCcccCCCCEEEEeccccccccccccccccccccccccccccccccccccCCcccchhHHHHHHHHHHHHHh
Confidence            45668889999999999999999861                                 1  11    1222   33333


Q ss_pred             c-cccccccccccccccccCCcceEEEEeccCCCcccccccccC-C-CcEEEEeeccCccchhh----hcCCCcceEEEE
Q psy14927        409 Y-KVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGP-G-IEYKVGKFPFAANSRAK----TNNDTDGFVKVL  481 (1074)
Q Consensus       409 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-g-~~~~v~~~~~~~~~ra~----~~~~~~G~~Kli  481 (1074)
                      . ....+++..+|..+..+++.+.+++++..         ++.. | .++.+...++..++++.    ..+.+.|++|++
T Consensus       370 g~~~~~~~~~~~p~~~~~~~~~a~vGl~e~~---------a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli  440 (500)
T 1onf_A          370 LKKTRKTNYKLIPTVIFSHPPIGTIGLSEEA---------AIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYLKLV  440 (500)
T ss_dssp             SCTTCCCCCSSCCEEECCSSCEEEEECCHHH---------HHHHTCGGGEEEEEEEECCGGGTTSCSCGGGSCCEEEEEE
T ss_pred             CCCCccCCCCCCCeEEEcCcceEEEeCCHHH---------HHhcCCCccEEEEEEECchhhhhhccccccCCCceEEEEE
Confidence            2 22235677889999999999999998766         4444 3 57899999999999998    677899999999


Q ss_pred             EECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHHhhhcccCCccccccc
Q psy14927        482 GDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEKN  534 (1074)
Q Consensus       482 ~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l~~~~~~hPt~s~e~~  534 (1074)
                      +++++++|||+|++|++++|+|+.+++|++.+.|+++|..++++|||+++.+.
T Consensus       441 ~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~  493 (500)
T 1onf_A          441 CVGKDELIKGLHIIGLNADEIVQGFAVALKMNATKKDFDETIPIHPTAAEEFL  493 (500)
T ss_dssp             EETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSTTHHH
T ss_pred             EECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhccccCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999998763

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=99.35  E-value=9.3e-13  Score=155.57  Aligned_cols=154  Identities=16%  Similarity=0.104  Sum_probs=123.6

Q ss_pred             HhhhhhccccccccccCCceEEeccchh------h---------ccHHHH---hcccccccccccc-ccccccccccCCc
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWT------L---------LSLARV---LEGIEYKVGKFPF-AANSRAKTNNDTD  429 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~---------~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~  429 (1074)
                      +++.+.+..|+.+||+..+||..||...      |         ....|+   ..++......++. ...+.....+++.
T Consensus       256 ~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~  335 (449)
T 3kd9_A          256 IGETGAIWTNEKMQTSVENVYAAGDVAETRHVITGRRVWVPLAPAGNKMGYVAGSNIAGKELHFPGVLGTAVTKFMDVEI  335 (449)
T ss_dssp             BCTTSSBCCCTTCBCSSTTEEECSTTBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHTTCCCCCCCBCCCEEEEETTEEE
T ss_pred             CCCCCCEEECCCCccCCCCEEEeeeeeeeccccCCceEEeccHHHHHHHHHHHHHHhcCCCccCCCcccceEEEEcCcEE
Confidence            5667779999999999999999999842      2         122222   4444443333432 3457788999999


Q ss_pred             ceEEEEeccCCCcccccccccCCCcEEEEeeccCccchhhhc-CCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHH
Q psy14927        430 GFVKVLGDKLTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTN-NDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVL  508 (1074)
Q Consensus       430 ~~~~~~~~~~~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~-~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~  508 (1074)
                      +.+++++.+         +++.|+++.+..++  .++|+... +.+.||+|++++++|++|||+|++|++++|+|+.+++
T Consensus       336 ~~vG~~e~~---------a~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~  404 (449)
T 3kd9_A          336 GKTGLTEME---------ALKEGYDVRTAFIK--ASTRPHYYPGGREIWLKGVVDNETNRLLGVQVVGSDILPRIDTAAA  404 (449)
T ss_dssp             EEEECCHHH---------HHHTTCCEEEEEEE--EESSCTTSTTCCEEEEEEEEETTTCBEEEEEEEESSCHHHHHHHHH
T ss_pred             EEecCCHHH---------HHHCCCceEEEEEe--cCCccccCCCCceEEEEEEEECCCCEEEEEEEEChHHHHHHHHHHH
Confidence            999999877         77788888888765  45666665 7789999999999999999999999999999999999


Q ss_pred             HHHcCCCHHHHhhh-cccCCcccccc
Q psy14927        509 AMEYGASCEDVART-CHAHPTVCVEK  533 (1074)
Q Consensus       509 a~~~~~~~~~l~~~-~~~hPt~s~e~  533 (1074)
                      ||+.|.|+++|..+ +++||++++..
T Consensus       405 ai~~~~t~~~l~~~~~~~~p~~~~~~  430 (449)
T 3kd9_A          405 MLMAGFTTKDAFFTDLAYAPPFAPVW  430 (449)
T ss_dssp             HHHTTCBHHHHHTCCCCCBTTTBCSS
T ss_pred             HHHcCCcHHHHhhcccccCCCCCCch
Confidence            99999999999998 56899998654

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=99.33  E-value=1.2e-12  Score=155.82  Aligned_cols=153  Identities=16%  Similarity=0.122  Sum_probs=107.1

Q ss_pred             HhhhhhccccccccccCCceEEeccchh------h---------ccHHH---Hhcccccccccccccccc--ccccccCC
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWT------L---------LSLAR---VLEGIEYKVGKFPFAANS--RAKTNNDT  428 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~---------~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~  428 (1074)
                      +++.+.+..++.+||+..+||..||...      |         ....|   |+.++......++. ..+  -....+++
T Consensus       270 ~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~-~~~~~~~~~~~~~  348 (472)
T 3iwa_A          270 LDPRGAIIVDTRMRTSDPDIFAGGDCVTIPNLVTGKPGFFPLGSMANRQGRVIGTNLADGDATFPG-AVGSWAVKLFEGS  348 (472)
T ss_dssp             BCTTCCEECCTTCBCSSTTEEECGGGEEEEBTTTSSEECCCCTTHHHHHHHHHHHHHTTCCCCCCC-BCCCEEEECSSCE
T ss_pred             CCCCCCEEECCCcccCCCCEEEeccceecccccCCceeecchHHHHHHHHHHHHHHhcCCCccCCC-CCcceEEEECCce
Confidence            5667778999999999999999999841      2         12233   35555543333221 222  23456899


Q ss_pred             cceEEEEeccCCCcccccccccCCCcEEEEeeccCccchhhhc-CCCcceEEEEEECCCCcEEEEEEeCC---ChhHHHH
Q psy14927        429 DGFVKVLGDKLTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTN-NDTDGFVKVLGDKLTDKVLGVHIIGP---AAGELIN  504 (1074)
Q Consensus       429 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~-~~~~G~~Kli~~~~~~~ilG~~iiG~---~a~eli~  504 (1074)
                      .+.+++++.+         +++.|+++.+..+  ...+|+... +.+.||+|+++|++|++|||+|++|+   +++|+|+
T Consensus       349 ~a~vG~~e~~---------a~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~~~~~~~~i~  417 (472)
T 3iwa_A          349 ASGAGLTVEG---------ALREGYDAVNVHV--EQFDRAHFYPEKTIMTLQLVVDRPTRRVLGIQGFSTLGDALTARIN  417 (472)
T ss_dssp             EEEEECCHHH---------HHHTTCCEEEEEE--EC-----------CEEEEEEEETTTCBEEEEEEEESCHHHHHHHHH
T ss_pred             eEEEECCHHH---------HHHcCCceEEEEE--ecCCccCccCCCceEEEEEEEECCCCEEEEEEEECCCcccHHHHHH
Confidence            9999998876         7778888888765  456778777 88999999999999999999999999   5699999


Q ss_pred             HHHHHHHcCCCHHHHhhhcccC-Ccccccc
Q psy14927        505 EAVLAMEYGASCEDVARTCHAH-PTVCVEK  533 (1074)
Q Consensus       505 ~~a~a~~~~~~~~~l~~~~~~h-Pt~s~e~  533 (1074)
                      .+++||+.+.|+++|.+++++| ||+++..
T Consensus       418 ~~~~ai~~~~t~~~l~~~~~~~~P~~~~~~  447 (472)
T 3iwa_A          418 AVATMLASKPTVEDISNAEVVYSPPFASAM  447 (472)
T ss_dssp             HHHHHHTTCCBHHHHHTCCCC--------C
T ss_pred             HHHHHHHcCCCHHHHhcccccCCCCCCCcc
Confidence            9999999999999999999998 9999765

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=99.28  E-value=5.7e-12  Score=154.38  Aligned_cols=158  Identities=18%  Similarity=0.199  Sum_probs=127.2

Q ss_pred             HhhhhhccccccccccCCceEEeccchhh---c---cHHHH---hcccccc-ccccccccccccccccCCcceEEEEecc
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWTL---L---SLARV---LEGIEYK-VGKFPFAANSRAKTNNDTDGFVKVLGDK  438 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (1074)
                      +++.+.+..|+.+|||..+||..||...|   +   ...|+   +..+... ....++..+|..+..+++.+.+++++..
T Consensus       409 ~~~~G~i~vd~~~~ts~~~VyA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~~~~~~~~a~vGl~e~~  488 (598)
T 2x8g_A          409 LDKNGRVVCTDDEQTTVSNVYAIGDINAGKPQLTPVAIQAGRYLARRLFAGATELTDYSNVATTVFTPLEYGACGLSEED  488 (598)
T ss_dssp             BCTTSCBCCCTTSBCSSTTEEECGGGBTTSCCCHHHHHHHHHHHHHHHHHCCCCCCCCTTCCEEECSSSCEEEEECCHHH
T ss_pred             ECCCCcEEeCCCCcCCCCCEEEEeeecCCCCccHHHHHHhHHHHHHHHhcCCCcccCCCCCcEEEECCCceEEEeCCHHH
Confidence            45667788999999999999999999433   1   12222   3444322 2234577888999999999999987665


Q ss_pred             CCCcccccccccC-C-CcEEEEeeccCccchhhhcCC-CcceEEEEEEC-CCCcEEEEEEeCCChhHHHHHHHHHHHcCC
Q psy14927        439 LTDKVLGVHIIGP-G-IEYKVGKFPFAANSRAKTNND-TDGFVKVLGDK-LTDKVLGVHIIGPAAGELINEAVLAMEYGA  514 (1074)
Q Consensus       439 ~~~~~lg~~~~~~-g-~~~~v~~~~~~~~~ra~~~~~-~~G~~Kli~~~-~~~~ilG~~iiG~~a~eli~~~a~a~~~~~  514 (1074)
                               ++.. | ..+.+.+.+|..+.+++..+. +.|++|+++++ ++|+|||+|++|++++|+|+.+++||+.+.
T Consensus       489 ---------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~  559 (598)
T 2x8g_A          489 ---------AIEKYGDKDIEVYHSNFKPLEWTVAHREDNVCYMKLVCRKSDNMRVLGLHVLGPNAGEITQGYAVAIKMGA  559 (598)
T ss_dssp             ---------HHHHHCGGGEEEEEEEECCTHHHHTTCCSSCEEEEEEEETTTTTEEEEEEEESTTHHHHHHHHHHHHHTTC
T ss_pred             ---------HHhhCCCCcEEEEEEeccchhHHhhcCCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHcCC
Confidence                     4433 3 358888889999999887754 78999999996 699999999999999999999999999999


Q ss_pred             CHHHHhhhcccCCcccccccc
Q psy14927        515 SCEDVARTCHAHPTVCVEKND  535 (1074)
Q Consensus       515 ~~~~l~~~~~~hPt~s~e~~~  535 (1074)
                      |+++|.+++|+|||+++.+..
T Consensus       560 t~~~l~~~~~~hPt~~e~~~~  580 (598)
T 2x8g_A          560 TKADFDRTIGIHPTCSETFTT  580 (598)
T ss_dssp             BHHHHHHSCCCSSCSGGGGGS
T ss_pred             CHHHHhhccccCCCHHHHHHH
Confidence            999999999999999988744

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=99.27  E-value=1.2e-12  Score=155.31  Aligned_cols=201  Identities=15%  Similarity=0.093  Sum_probs=113.8

Q ss_pred             hhhHHHHhhhCCeEEEeee-EEEec--CCeE-EEEeCCCCeeEEEcCeEEEccCCCCCCCC------CCCCCCcc-----
Q psy14927        845 TGGIAHLFKSNKVTQLNGH-GKITG--PNTV-TVIKSDGSTEEVKTKNILIATGSEVTPFP------GIEVDEET-----  909 (1074)
Q Consensus       845 ~~~~~~~l~~~gV~~~~g~-v~~id--~~~~-~v~~~~G~~~~i~~d~lIIATG~~p~~ip------gi~~~~~~-----  909 (1074)
                      ...+.+.+++.||+++.++ | .+.  .+.+ .+...+. ..++.+|.||+|||+.+..++      +..+++..     
T Consensus       122 ~~~L~~~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~-~g~~~a~~VVlAtGg~~~~~~~~~~~~~~tGdgi~~a~~a  199 (472)
T 2e5v_A          122 FNFLLKLAREEGIPIIEDRLV-EIRVKDGKVTGFVTEKR-GLVEDVDKLVLATGGYSYLYEYSSTQSTNIGDGMAIAFKA  199 (472)
T ss_dssp             HHHHHHHHHHTTCCEECCCEE-EEEEETTEEEEEEETTT-EEECCCSEEEECCCCCGGGSSSBSSCTTCSCHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCEEEECcEE-EEEEeCCEEEEEEEEeC-CCeEEeeeEEECCCCCcccCccccCCCCCchHHHHHHHHc
Confidence            3445556667899999995 7 663  3333 1233221 135789999999999863222      11111100     


Q ss_pred             ---eechhhHh------------cchHhhHHhhcCCcEEEEecCCccCCCCCCHHH--------HHHHHHHHHhCCCEEE
Q psy14927        910 ---IVSSTGAL------------SLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEV--------AKQFQRILGKQGMQFK  966 (1074)
Q Consensus       910 ---v~t~~~~~------------~~~~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~--------~~~~~~~l~~~gV~i~  966 (1074)
                         +... ++.            ...-+..++..|..| +..++++++ +.+++..        ...+.+.+++.|. ++
T Consensus       200 Ga~~~d~-e~~q~~p~~~~~ggg~~~~ae~~~~~G~~~-v~~~g~rf~-~~~~~~~el~~rd~v~~~i~~~~~~~~~-v~  275 (472)
T 2e5v_A          200 GTILADM-EFVQFHPTVTSLDGEVFLLTETLRGEGAQI-INENGERFL-FNYDKRGELAPRDILSRAIYIEMLKGHK-VF  275 (472)
T ss_dssp             TCCEECT-TCEEEEEEEECGGGCCEECCTHHHHTTCEE-EETTCCCGG-GGTCTTGGGSCHHHHHHHHHHHHHHTCC-EE
T ss_pred             CCCEeCC-cceEEEeEEEccCCCceeeehhhcCCceEE-ECCCCCCCC-ccCCcccCcCchhHHHHHHHHHHHhCCc-EE
Confidence               0000 000            000044566677776 777888887 5555443        5566666766653 22


Q ss_pred             eCceEEEEEecCCeEEEEEeeccCCCCceEEE-cCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEE
Q psy14927        967 LGTKVTGASKSGDNITVTIENVKDPTKKEELS-CDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFA 1045 (1074)
Q Consensus       967 ~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~-~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyA 1045 (1074)
                      .+...  +   +.     +.        ..++ .|.+++++|..|+ +++.....  .....|.|.||++++|++|||||
T Consensus       276 ld~~~--~---~~-----~~--------~~~~~~~~~~~~~G~dp~-~~i~v~p~--~~~~~GGI~vd~~~~t~ipgLyA  334 (472)
T 2e5v_A          276 IDLSK--I---ED-----FE--------RKFPVVAKYLARHGHNYK-VKIPIFPA--AHFVDGGIRVNIRGESNIVNLYA  334 (472)
T ss_dssp             EECTT--C---TT-----HH--------HHCHHHHHHHHHTTCCTT-SCEECEEE--EEEESCEEECCTTCBCSSBTEEE
T ss_pred             Eeccc--h---HH-----HH--------HHhHHHHHHHHHhCcCcc-cceEeehh--hceeCCCeEECCCCccccCCEEe
Confidence            22110  0   00     00        1233 4677888999999 65432222  22336889999999999999999


Q ss_pred             ecccCC-CC----CcHHHHHHH----HHHHHHHhhC
Q psy14927       1046 IGDCIH-GP----MLAHKAEDE----GIVCVEGIAG 1072 (1074)
Q Consensus      1046 iGD~~~-~~----~~~~~A~~~----G~~aA~~I~~ 1072 (1074)
                      +|||+. +.    .++..|..+    |+.|+.+|++
T Consensus       335 aGd~a~~~~hg~~rl~~~sl~~~~v~G~~a~~~~a~  370 (472)
T 2e5v_A          335 IGEVSDSGLHGANRLASNSLLEGLVFGINLPRYVDS  370 (472)
T ss_dssp             CGGGEECSSSTTSCCTTHHHHHHHHHHHHGGGTTTS
T ss_pred             cchhcccccCCCCCCCcccHHHHHHHHHHHHHHHHh
Confidence            999987 32    345555555    6666666543

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=99.18  E-value=4e-10  Score=134.57  Aligned_cols=228  Identities=16%  Similarity=0.146  Sum_probs=130.4

Q ss_pred             hhhhhHHHHhhhCCeEEEee-eEEEecC----------CeEEEEeC---CCCeeEEEcCeEEEccCCCCCCCCCCCCCCc
Q psy14927        843 ALTGGIAHLFKSNKVTQLNG-HGKITGP----------NTVTVIKS---DGSTEEVKTKNILIATGSEVTPFPGIEVDEE  908 (1074)
Q Consensus       843 ~l~~~~~~~l~~~gV~~~~g-~v~~id~----------~~~~v~~~---~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~  908 (1074)
                      ++.+++.....+++..+.+| +|+.+..          ..++|++.   +|...++.++.||+|||..| .+|+......
T Consensus       146 E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~vVlatG~~P-~iP~~~~~~g  224 (501)
T 4b63_A          146 EFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIGGTA-KMPSGLPQDP  224 (501)
T ss_dssp             HHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEEEEEECCCCEE-CCCTTSCCCT
T ss_pred             HHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEeCEEEECcCCCC-CCCCCCCCCc
Confidence            45555565666667667777 4666532          23667664   34556899999999999876 4666555556


Q ss_pred             ceechhhHhcc-----------hH-------------hhHHhhc--CCcEEEEecCCccCCCC--------CCHH-----
Q psy14927        909 TIVSSTGALSL-----------KK-------------GSVWGRL--GAEVTAIEFMNAIGGMG--------IDGE-----  949 (1074)
Q Consensus       909 ~v~t~~~~~~~-----------~~-------------A~~l~~~--G~~Vtlv~~~~~~~~~~--------~~~~-----  949 (1074)
                      .++++.++...           +.             +..|.+.  +.+|+++.|++.+.+..        +.|+     
T Consensus       225 ~v~Hss~y~~~~~~~~~~~~~gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~~~~p~~~s~~~~~~f~p~~~~~f  304 (501)
T 4b63_A          225 RIIHSSKYCTTLPALLKDKSKPYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDSAMRPSDDSPFVNEIFNPERVDKF  304 (501)
T ss_dssp             TEEEGGGHHHHHHHHSCCTTSCCEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSSSCCBCCCCTTGGGGGSTTHHHHH
T ss_pred             ceeeccccccchhhccccccCCcEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCCccccccccccchhhcCHHHHHHH
Confidence            67766665431           11             3334332  67999999987654211        1111     


Q ss_pred             ------HHHHHH--------------------HH-----HH-----hCCCEEEeCceEEEEEecCC--eEEEEEeecc--
Q psy14927        950 ------VAKQFQ--------------------RI-----LG-----KQGMQFKLGTKVTGASKSGD--NITVTIENVK--  989 (1074)
Q Consensus       950 ------~~~~~~--------------------~~-----l~-----~~gV~i~~~~~v~~i~~~~~--~~~v~~~~~~--  989 (1074)
                            .+..+.                    +.     +.     .....+..+..+..+...+.  .+.+......  
T Consensus       305 ~~l~~~~r~~~~~~~~~~~~~~v~~~li~~i~~~~y~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~v~~~~~~~~  384 (501)
T 4b63_A          305 YSQSAAERQRSLLADKATNYSVVRLELIEEIYNDMYLQRVKNPDETQWQHRILPERKITRVEHHGPQSRMRIHLKSSKPE  384 (501)
T ss_dssp             HTSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCSCGGGCSSEEECSEEEEEEECCSSSSCEEEEEEESCC-
T ss_pred             HhCCHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhccCCCcccccceeecCCcceeeeeecCCCCeEEEEeeeeEEe
Confidence                  111110                    00     10     11235666666666654322  2333322110  


Q ss_pred             ----CCCCceEEEcCEEEEccCCcccCC-ccCccccCcccCCCCCeeeCCCCCC--------CCCCEEEecccCC-----
Q psy14927        990 ----DPTKKEELSCDALLVCVGRRPYTH-NLGLEEIGIEKDEKGRVPVNSRFQT--------VIPNIFAIGDCIH----- 1051 (1074)
Q Consensus       990 ----~~g~~~~i~~D~vi~a~G~~p~~~-~l~l~~~gl~ld~~G~I~Vd~~~~t--------s~~~IyAiGD~~~----- 1051 (1074)
                          ..+.++++++|.||+|||++|+.. ++.-....+..|.+|.+.|+..++.        ..++||+-|-+-.     
T Consensus       385 ~~~v~~~dg~~~~~D~VI~ATGy~~~~p~~L~~~~~~l~~d~~g~~~v~rdy~~~~~~~~~~~~~~i~~qg~~~~thG~~  464 (501)
T 4b63_A          385 SEGAANDVKETLEVDALMVATGYNRNAHERLLSKVQHLRPTGQDQWKPHRDYRVEMDPSKVSSEAGIWLQGCNERTHGLS  464 (501)
T ss_dssp             -------CCCEEEESEEEECCCEECCTHHHHTGGGGGGSSTTCCSCCBCTTSBBCCCTTTBCTTCEEEECSCCHHHHCTT
T ss_pred             CCeeEeCCCeEEECCEEEECcCCCCCCcchhcchhhhcCcCcCCCeeeCCCcEEeecCCccCCCceEEecCCCcccCCcc
Confidence                023467899999999999998763 2111112356677888888876652        2467999985422     


Q ss_pred             CCCcHHHHHHHHHHHHHHhhC
Q psy14927       1052 GPMLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus      1052 ~~~~~~~A~~~G~~aA~~I~~ 1072 (1074)
                      .|.+...|.+.|.++ ..|+|
T Consensus       465 ~~~Ls~~a~R~~~I~-~~l~g  484 (501)
T 4b63_A          465 DSLLSVLAVRGGEMV-QSIFG  484 (501)
T ss_dssp             TTSSTTHHHHHHHHH-HHHHH
T ss_pred             hhhHHHHHHHHHHHH-HHHhc
Confidence            255566788877654 44544

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=99.17  E-value=2.5e-11  Score=148.43  Aligned_cols=153  Identities=15%  Similarity=0.118  Sum_probs=117.6

Q ss_pred             HhhhhhccccccccccCCceEEeccchh------h------c---cHHH---Hhccccc-cccccccccccc--cccccC
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWT------L------L---SLAR---VLEGIEY-KVGKFPFAANSR--AKTNND  427 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~------~---~~~~---~~~~~~~-~~~~~~~~~~~~--~~~~~~  427 (1074)
                      +++.+.+..++.+||+..+||..||...      |      +   ...|   |..++.. ....++ ...+.  ....++
T Consensus       294 ~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~-~~~~~~~~~~~~~  372 (588)
T 3ics_A          294 LGVRGTIKVNEKFQTSDPHIYAIGDAIEVKDFVTETETMIPLAWPANRQGRMLADIIHGHTDSLYK-GTLGTSVAKVFDL  372 (588)
T ss_dssp             BCGGGCBCCCTTSBCSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTCCSSCCC-CBCCCEEEEETTE
T ss_pred             EcCCCCEEECCccccCCCCEEEeeeeeecccccCCcccccccHHHHHHHHHHHHHHhcCCCccccC-CcccceEEEECCe
Confidence            5677889999999999999999999852      2      1   1222   2444443 222222 22232  235689


Q ss_pred             CcceEEEEeccCCCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCC-hhHHHHHH
Q psy14927        428 TDGFVKVLGDKLTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPA-AGELINEA  506 (1074)
Q Consensus       428 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~-a~eli~~~  506 (1074)
                      +.+.|++++..         +++.|+++.+..++.... .+...+.+.||+|+++|++|++|||+|++|++ ++|+|+.+
T Consensus       373 ~~a~vGlte~~---------a~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~k~i~~~~~~~ilG~~~~g~~~~~e~i~~~  442 (588)
T 3ics_A          373 TVATTGLNEKI---------LKRLNIPYEVVHVQANSH-AGYYPNATPVLIKLIFNKDSGKIYGAQTLGRDGVDKRMDVI  442 (588)
T ss_dssp             EEEEEECCHHH---------HHHTTCCCEEEEEEEESS-CTTSTTCCEEEEEEEECTTTCBEEEEEEEESSSHHHHHHHH
T ss_pred             EEEEecCCHHH---------HHHcCCCeEEEEEecCCc-cccCCCCceEEEEEEEECCCCeEEEEEEEcCCcHHHHHHHH
Confidence            99999998877         777898998887764332 23567889999999999999999999999985 89999999


Q ss_pred             HHHHHcCCCHHHHhhhcccC-Cccccc
Q psy14927        507 VLAMEYGASCEDVARTCHAH-PTVCVE  532 (1074)
Q Consensus       507 a~a~~~~~~~~~l~~~~~~h-Pt~s~e  532 (1074)
                      ++||+.+.|+++|.+++++| |+++..
T Consensus       443 ~~ai~~~~t~~~l~~~~~~~~P~~~~~  469 (588)
T 3ics_A          443 ATAIKANLTVLDLPDLELSYAPPYSSA  469 (588)
T ss_dssp             HHHHHTTCBTTTGGGCCCCCSTTTCCS
T ss_pred             HHHHHcCCCHHHhhhhhhccCCCcccc
Confidence            99999999999999999988 988744

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=99.17  E-value=2.3e-11  Score=143.50  Aligned_cols=154  Identities=18%  Similarity=0.138  Sum_probs=119.1

Q ss_pred             HhhhhhccccccccccCCceEEeccchh------h---------ccHHHH---hccccccccccc-cccccccccccCCc
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWT------L---------LSLARV---LEGIEYKVGKFP-FAANSRAKTNNDTD  429 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~---------~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~  429 (1074)
                      +++++.+..|+++||++.+||..||...      |         ....|+   ..++......++ ....+.....+++.
T Consensus       257 ~~~~G~i~Vd~~~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~  336 (447)
T 1nhp_A          257 LHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPVKPFPGVQGSSGLAVFDYKF  336 (447)
T ss_dssp             BCTTSCBCCCTTCBCSSTTEEECGGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSSSCCCCCCCBCCCEEEEETTEEE
T ss_pred             hcCCCcEEECccccCCCCCEEEeeeEEEeeccCCCCceechhHHHHHHHHHHHHHhhcCCCCCCCCccccEEEEECCeee
Confidence            4566778899999999999999999853      1         122222   444543221121 23456677788888


Q ss_pred             ceEEEEeccCCCcccccccccCCCcEEEEeeccCccchhhhc-CCCcceEEEEEECCCCcEEEEEEeCCC-hhHHHHHHH
Q psy14927        430 GFVKVLGDKLTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTN-NDTDGFVKVLGDKLTDKVLGVHIIGPA-AGELINEAV  507 (1074)
Q Consensus       430 ~~~~~~~~~~~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~-~~~~G~~Kli~~~~~~~ilG~~iiG~~-a~eli~~~a  507 (1074)
                      +.++++...         ++..|+++.+..  +..+.++..+ +.+.|++|+++++++++|||+|++|+. ++|+|+.++
T Consensus       337 ~~vG~~~~~---------a~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~a~e~i~~~~  405 (447)
T 1nhp_A          337 ASTGINEVM---------AQKLGKETKAVT--VVEDYLMDFNPDKQKAWFKLVYDPETTQILGAQLMSKADLTANINAIS  405 (447)
T ss_dssp             EEEECCHHH---------HHHHTCCCEEEE--EEEESSCTTCTTCCEEEEEEEECTTTCBEEEEEEEESSCCTTHHHHHH
T ss_pred             EEecCCHHH---------HHHcCCceEEEE--EEcCCccccCCCCceEEEEEEEECCCCEEEEEEEEcCccHHHHHHHHH
Confidence            888877654         555677777664  5667777776 678899999999999999999999999 999999999


Q ss_pred             HHHHcCCCHHHHhhh-cccCCcccccc
Q psy14927        508 LAMEYGASCEDVART-CHAHPTVCVEK  533 (1074)
Q Consensus       508 ~a~~~~~~~~~l~~~-~~~hPt~s~e~  533 (1074)
                      ++|+.+.|+++|..+ +++|||+++..
T Consensus       406 ~ai~~~~~~~~l~~~~~~~~Pt~~e~~  432 (447)
T 1nhp_A          406 LAIQAKMTIEDLAYADFFFQPAFDKPW  432 (447)
T ss_dssp             HHHHTTCBHHHHHTCCCCCCTTTCCSS
T ss_pred             HHHHcCCCHHHHhhcceecCCCCCCcc
Confidence            999999999999997 79999999765

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=99.15  E-value=3.8e-11  Score=141.84  Aligned_cols=154  Identities=13%  Similarity=0.008  Sum_probs=117.1

Q ss_pred             HhhhhhccccccccccCCceEEeccchhh-----------cc----HHHH---hccccccccccc-cccccccccccCCc
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWTL-----------LS----LARV---LEGIEYKVGKFP-FAANSRAKTNNDTD  429 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~----~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~  429 (1074)
                      +++++.+..|+++|||..+||..||..-.           ..    ..|+   ..++......++ ....+....-+++.
T Consensus       258 ~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~  337 (452)
T 2cdu_A          258 MLDNGAIITDEYMHSSNRDIFAAGDSAAVHYNPTNSNAYIPLATNAVRQGRLVGLNLTEDKVKDMGTQSSSGLKLYGRTY  337 (452)
T ss_dssp             BCTTSCBCCCTTSBCSSTTEEECSTTBCEEETTTTEEECCCCHHHHHHHHHHHHHTSSSCCCCCCCBCCCEEEEETTEEE
T ss_pred             cCCCCCEEECCCcCcCCCCEEEcceEEEeccccCCCeeecchHHHHHHHHHHHHHHhCCCCCcCCCccceEEEEECCeee
Confidence            56677799999999999999999998432           11    2222   455543221111 11223344447777


Q ss_pred             ceEEEEeccCCCcccccccccCCCcEEEEeeccCccchhhhc-CCCcceEEEEEECCCCcEEEEEEeCC-ChhHHHHHHH
Q psy14927        430 GFVKVLGDKLTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTN-NDTDGFVKVLGDKLTDKVLGVHIIGP-AAGELINEAV  507 (1074)
Q Consensus       430 ~~~~~~~~~~~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~-~~~~G~~Kli~~~~~~~ilG~~iiG~-~a~eli~~~a  507 (1074)
                      +.+++....         ++..|+++.+.  .+..+.|+..+ +.+.|++|+++++++++|||+|++|+ +++|+|+.++
T Consensus       338 ~~vG~~~~~---------a~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~i~~~~  406 (452)
T 2cdu_A          338 VSTGINTAL---------AKANNLKVSEV--IIADNYRPEFMLSTDEVLMSLVYDPKTRVILGGALSSMHDVSQSANVLS  406 (452)
T ss_dssp             EEEECCHHH---------HHHTTCCCEEE--EEEEESSCTTBSCCCEEEEEEEECTTTCBEEEEEEEESSCCHHHHHHHH
T ss_pred             EeecCCHHH---------HHHcCCceEEE--EEecCCccccCCCCceEEEEEEEECCCCEEEEEEEEcCccHHHHHHHHH
Confidence            778776654         66677777777  36778888876 66889999999999999999999999 8999999999


Q ss_pred             HHHHcCCCHHHHhhh-cccCCcccccc
Q psy14927        508 LAMEYGASCEDVART-CHAHPTVCVEK  533 (1074)
Q Consensus       508 ~a~~~~~~~~~l~~~-~~~hPt~s~e~  533 (1074)
                      ++|+.+.|+++|..+ +++|||+++..
T Consensus       407 ~ai~~~~~~~~l~~~~~~~~Pt~~e~~  433 (452)
T 2cdu_A          407 VCIQNKNTIDDLAMVDMLFQPQFDRPF  433 (452)
T ss_dssp             HHHHTTCBHHHHHHSCCCCCTTTCCSS
T ss_pred             HHHHcCCCHHHHhhhhhccCCCCCchH
Confidence            999999999999986 89999999765

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=99.15  E-value=5.8e-11  Score=141.29  Aligned_cols=154  Identities=18%  Similarity=0.062  Sum_probs=119.4

Q ss_pred             HhhhhhccccccccccCCceEEeccchh------h---------ccHHHH---hcccccccccc-ccccccccccccCCc
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWT------L---------LSLARV---LEGIEYKVGKF-PFAANSRAKTNNDTD  429 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~---------~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~  429 (1074)
                      +++++.++.|+++|||..+||..||...      |         ....|+   ..++......+ +....+.....+++.
T Consensus       294 ~~~~G~I~Vd~~~~ts~p~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~  373 (480)
T 3cgb_A          294 TNHKGAIEVNAYMQTNVQDVYAAGDCATHYHVIKEIHDHIPIGTTANKQGRLAGLNMLDKRRAFKGTLGTGIIKFMNLTL  373 (480)
T ss_dssp             BCTTSCBCCCTTSBCSSTTEEECGGGBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHTTCCCCCCCBCCCEEEEETTEEE
T ss_pred             cCCCCCEEECCCccCCCCCEEEeeeEEEecCCCCCcceecchHHHHHHHHHHHHHHhcCCCccCCCccceeEEEECCcEE
Confidence            4566778999999999999999999842      1         122233   44444332233 234567888999999


Q ss_pred             ceEEEEeccCCCcccccccccCCCcEEEEeeccCccchhhhc-CCCcceEEEEEECCCCcEEEEEEeCCC-hhHHHHHHH
Q psy14927        430 GFVKVLGDKLTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTN-NDTDGFVKVLGDKLTDKVLGVHIIGPA-AGELINEAV  507 (1074)
Q Consensus       430 ~~~~~~~~~~~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~-~~~~G~~Kli~~~~~~~ilG~~iiG~~-a~eli~~~a  507 (1074)
                      +.++++...         ++..|+++.+..+...  .++... +.+.|++|+++++++++|||+|++|+. ++|+|+.++
T Consensus       374 ~~vG~~~~~---------a~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~vg~~~a~e~i~~~~  442 (480)
T 3cgb_A          374 ARTGLNEKE---------AKGLHIPYKTVKVDST--NMAGYYPNAKPLYLKLLYRSDTKQLLGGQVIGEEGVDKRIDVIA  442 (480)
T ss_dssp             EEEECCHHH---------HHHTTCCEEEEEEEEE--SSCTTSTTCCEEEEEEEEETTTCBEEEEEEEESSSHHHHHHHHH
T ss_pred             EEeCCCHHH---------HHHcCCceEEEEEecC--CcccccCCCceEEEEEEEECCCCEEEEEEEECCccHHHHHHHHH
Confidence            999887655         6667888888776653  344333 578899999999999999999999999 999999999


Q ss_pred             HHHHcCCCHHHHhhh-cccCCcccccc
Q psy14927        508 LAMEYGASCEDVART-CHAHPTVCVEK  533 (1074)
Q Consensus       508 ~a~~~~~~~~~l~~~-~~~hPt~s~e~  533 (1074)
                      +||+.+.|+++|..+ +++|||+++..
T Consensus       443 ~ai~~~~~~~~l~~~~~~~~Pt~~e~~  469 (480)
T 3cgb_A          443 MALFNKMSIHDLEDVDLSYAPPYNSVW  469 (480)
T ss_dssp             HHHHTTCBGGGGGGCCCCCCTTTCCSS
T ss_pred             HHHHcCCCHHHHhhcccccCCCCCCch
Confidence            999999999999997 57999999765

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=99.13  E-value=4.3e-11  Score=145.61  Aligned_cols=154  Identities=14%  Similarity=0.113  Sum_probs=117.4

Q ss_pred             HhhhhhccccccccccCCceEEeccch------hhc---------cHHHH---hccccccccccccc-cccccccccCCc
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKW------TLL---------SLARV---LEGIEYKVGKFPFA-ANSRAKTNNDTD  429 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~---------~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~  429 (1074)
                      +++.+.+..++.+||+..+||..||..      .|-         ...|+   +.++......++.. ..+....-+++.
T Consensus       279 ~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~  358 (565)
T 3ntd_A          279 IGELGGIKVNAMMQTSDPAIYAVGDAVEEQDFVTGQACLVPLAGPANRQGRMAADNMFGREERYQGTQGTAICKVFDLAV  358 (565)
T ss_dssp             BCTTSSBCCCTTCBCSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTCCCCCCCBCCCEEEEETTEEE
T ss_pred             cCCCCCEEECCCcccCCCCEEEeeeeEeeccccCCceeecccHHHHHHHHHHHHHHhcCCCccCCCcccceEEEEcCcEE
Confidence            567778999999999999999999984      121         12232   55554433223221 122334568889


Q ss_pred             ceEEEEeccCCCcccccccccCCCcEEEEeeccCccchhhhc-CCCcceEEEEEECCCCcEEEEEEeCCCh-hHHHHHHH
Q psy14927        430 GFVKVLGDKLTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTN-NDTDGFVKVLGDKLTDKVLGVHIIGPAA-GELINEAV  507 (1074)
Q Consensus       430 ~~~~~~~~~~~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~-~~~~G~~Kli~~~~~~~ilG~~iiG~~a-~eli~~~a  507 (1074)
                      +.+++++..         +++.|+++.+..+  ...+++... +.+.||+|+++|+++++|||+|++|+++ +|+|+.++
T Consensus       359 ~~vG~~e~~---------a~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~k~v~~~~~~~ilG~~~~g~~a~~e~i~~~~  427 (565)
T 3ntd_A          359 GATGKNEKQ---------LKQAGIAFEKVYV--HTASHASYYPGAEVVSFKLLFDPVKGTIFGAQAVGKDGIDKRIDVMA  427 (565)
T ss_dssp             EEEECCHHH---------HHHTTCCCEEEEE--EEESSCTTSTTCCEEEEEEEECTTTCBEEEEEEEESSSHHHHHHHHH
T ss_pred             EEecCCHHH---------HHHcCCCeEEEEE--ecCcccCcCCCCceEEEEEEEECCCCEEEEEEEECCccHHHHHHHHH
Confidence            999988776         7777888877654  455677666 8889999999999999999999999999 99999999


Q ss_pred             HHHHcCCCHHHHhhhccc-CCcccccc
Q psy14927        508 LAMEYGASCEDVARTCHA-HPTVCVEK  533 (1074)
Q Consensus       508 ~a~~~~~~~~~l~~~~~~-hPt~s~e~  533 (1074)
                      +||+.|.|+++|.+++++ ||+++...
T Consensus       428 ~ai~~~~~~~~l~~~~~~~~P~~~~~~  454 (565)
T 3ntd_A          428 VAQRAGMTVEQLQHLELSYAPPYGSAK  454 (565)
T ss_dssp             HHHHTTCBHHHHTTCCCCCCTTTCCSS
T ss_pred             HHHHcCCCHHHHhhhhhccCcccCchh
Confidence            999999999999999875 49887543

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=99.11  E-value=6.4e-11  Score=141.33  Aligned_cols=154  Identities=13%  Similarity=0.008  Sum_probs=115.6

Q ss_pred             HhhhhhccccccccccCCceEEeccchhh-----------cc----HHHH---hccccccccccc-cccccccccccCCc
Q psy14927        369 VDKYLEMKRNQSFRSSNTDIILPVEKWTL-----------LS----LARV---LEGIEYKVGKFP-FAANSRAKTNNDTD  429 (1074)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~----~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~  429 (1074)
                      +++++.+..|+++||+..+||..||....           ..    ..|+   ..++......++ ....+....-+++.
T Consensus       302 ~~~~G~I~Vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~  381 (490)
T 2bc0_A          302 LFRNGAFLVNKRQETSIPGVYAIGDCATIYDNATRDTNYIALASNAVRTGIVAAHNACGTDLEGIGVQGSNGISIYGLHM  381 (490)
T ss_dssp             BCTTSCBCCCTTCBCSSTTEEECGGGBCEEETTTTEEECCCCHHHHHHHHHHHHHHHTTCCCCCCCBCCCEEEEETTEEE
T ss_pred             cCCCCCEEECCCcccCCCCEEEeeeeEEeccccCCceeecccHHHHHHHHHHHHHHhcCCCCCCCCcccceEEEECCcEe
Confidence            56677799999999999999999998431           11    2222   344432211111 11122223336777


Q ss_pred             ceEEEEeccCCCcccccccccCCCcEEEEeeccCccchhhhcC--CCcceEEEEEECCCCcEEEEEEeCC-ChhHHHHHH
Q psy14927        430 GFVKVLGDKLTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNN--DTDGFVKVLGDKLTDKVLGVHIIGP-AAGELINEA  506 (1074)
Q Consensus       430 ~~~~~~~~~~~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~--~~~G~~Kli~~~~~~~ilG~~iiG~-~a~eli~~~  506 (1074)
                      ..+++....         ++..|+++.+.  ++..+.|+..+.  .+.|++|+++++++++|||+|++|+ +++|+|+.+
T Consensus       382 ~~vG~~~~~---------a~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~a~e~i~~~  450 (490)
T 2bc0_A          382 VSTGLTLEK---------AKRLGFDAAVT--EYTDNQKPEFIEHGNFPVTIKIVYDKDSRRILGAQMAAREDVSMGIHMF  450 (490)
T ss_dssp             EEEECCHHH---------HHHTTCCEEEE--EEEEESSCTTCCSSCCEEEEEEEEETTTCBEEEEEEEESSCCTTHHHHH
T ss_pred             EEeeCCHHH---------HHHcCCceEEE--EEecCCcccccCCCCceEEEEEEEECCCCEEEEEEEEcCcCHHHHHHHH
Confidence            777776554         66678788777  677788888764  7789999999999999999999999 899999999


Q ss_pred             HHHHHcCCCHHHHhhh-cccCCcccccc
Q psy14927        507 VLAMEYGASCEDVART-CHAHPTVCVEK  533 (1074)
Q Consensus       507 a~a~~~~~~~~~l~~~-~~~hPt~s~e~  533 (1074)
                      ++||+.+.|+++|..+ +++|||+++..
T Consensus       451 ~~ai~~~~~~~~l~~~~~~~~Pt~~e~~  478 (490)
T 2bc0_A          451 SLAIQEGVTIEKLALTDIFFLPHFNKPY  478 (490)
T ss_dssp             HHHHHHTCBHHHHHHSCCCCCTTTCCTT
T ss_pred             HHHHHcCCCHHHHhhcceecCCCCCchh
Confidence            9999999999999986 89999999775

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.09  E-value=3.7e-09  Score=121.27  Aligned_cols=246  Identities=14%  Similarity=0.162  Sum_probs=142.9

Q ss_pred             HhhhcCCHHHHHHHHHHcCcc------cchhhhHh--hhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHh
Q psy14927          5 ETMKNGDIDRAIRMFEKAETH------QQHVPRML--LENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEA   76 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~------~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a   76 (1074)
                      .+++.|+|++|+..|+.+-..      +.+...+|  +++|..+++++.+++. .-|...|..+...|.|++|..+|.++
T Consensus        70 ~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~-~a~~~IGd~~~~~g~yeeA~~~Y~~a  148 (449)
T 1b89_A           70 AANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV  148 (449)
T ss_dssp             ---------------------------------------CHHHHTTTTTCC-----------------CTTTHHHHHHHT
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence            467789999999977766533      12222344  5799999999987543 47777799999999999999999999


Q ss_pred             hChhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHH-----------------HHHHHhCChHHHHH
Q psy14927         77 RDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAI-----------------HFYSVAGSCGNAVR  139 (1074)
Q Consensus        77 ~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai-----------------~~y~~a~~~~~A~~  139 (1074)
                      .+|..++.+|.++|++++|.+.+++.+++.....+..-|...|+++.|.                 ++|.+.|.|++|+.
T Consensus       149 ~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~  228 (449)
T 1b89_A          149 SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELIT  228 (449)
T ss_dssp             TCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHH
Confidence            9999999999999999999999999999988899999999999776665                 89999999999999


Q ss_pred             HHHHh-C-------chHHHHHHhhhcCchhHHHHHHHHcc-------------CC-hhHHHHHHHHhCChHHHHHHHHhh
Q psy14927        140 LCKEQ-A-------LDDQLWNLALSAGPSEQIEAATYLET-------------IE-PDKAVLLYHKAGALHKALDLAFKL  197 (1074)
Q Consensus       140 la~~~-~-------~~~~~~~l~~~~~~~~~~~~A~~~e~-------------~~-~~~A~~ly~kaG~~~kAl~l~~~~  197 (1074)
                      +-+.. +       ++.++.-+-....|+-+.+.=+.|.+             -. +.+.+-+|.+-|.+..|+...++.
T Consensus       229 lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h  308 (449)
T 1b89_A          229 MLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH  308 (449)
T ss_dssp             HHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence            88864 1       23333222233445444333333322             12 456777888888888888877774


Q ss_pred             ccCCcchHHHHHHHHHHhcCCCh--hhHHHhhhhcchHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHccCCHHHHHH
Q psy14927        198 TLSNSGLVFQIKAMKCLLKSGDT--NKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLLAN  273 (1074)
Q Consensus       198 ~~~~~~~~~~~~a~k~l~~~~~~--~~~i~~a~~~r~~~l~~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~aa~  273 (1074)
                      +                  ...|  +...++.....+.+||.+|++|+...    .|..+..+...-+..=.+....+
T Consensus       309 ~------------------~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~----~p~~l~~ll~~l~~~ld~~r~v~  364 (449)
T 1b89_A          309 P------------------TDAWKEGQFKDIITKVANVELYYRAIQFYLEF----KPLLLNDLLMVLSPRLDHTRAVN  364 (449)
T ss_dssp             T------------------TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH----CGGGHHHHHHHHGGGCCHHHHHH
T ss_pred             C------------------hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc----CHHHHHHHHHHHHhccCcHHHHH
Confidence            2                  2233  34566677778889999999988743    34444444333333333333333

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.05  E-value=4e-10  Score=142.75  Aligned_cols=154  Identities=13%  Similarity=0.107  Sum_probs=119.6

Q ss_pred             CHHHHHHHHHHcCcccchh-----------hhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhCh
Q psy14927         11 DIDRAIRMFEKAETHQQHV-----------PRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDY   79 (1074)
Q Consensus        11 ~~~eA~~~Ye~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~   79 (1074)
                      +++.+++++++.+.++...           ..+.+++|+.+.++....+++.+|+++|++++..++++.|++||.+++||
T Consensus       631 ~~~~~~~~l~~~~~~~~a~~~~~~~~~~f~~~l~~~~~~~A~~~~~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~  710 (814)
T 3mkq_A          631 SLTKIARFLEGQEYYEEALNISPDQDQKFELALKVGQLTLARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFTNAHDL  710 (814)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHCCCHHHHHHHHHHHTCHHHHHHHHTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHhCCChHHheecCCCcchheehhhhcCCHHHHHHHHHhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccCh
Confidence            4455666666666554211           12334789999999999999999999999999999999999999999999


Q ss_pred             hhhhhHhhccCCHHHHHHHHH---hcCChHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhh
Q psy14927         80 LSMVRVLCFLQDFSRAAELAN---ASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALS  156 (1074)
Q Consensus        80 ~~~vr~l~~~~~~~~a~~i~~---~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~  156 (1074)
                      .++.+++...|+.++..++++   ..++...|.++   |.+.|++++|+++|++.++|++|+.||++|+..++.+     
T Consensus       711 ~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~---~~~~g~~~~a~~~~~~~~~~~~A~~lA~~~~~~~~~i-----  782 (814)
T 3mkq_A          711 ESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNA---YWIAGDIQGAKDLLIKSQRFSEAAFLGSTYGLGDNEV-----  782 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHH---HHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCCHHHH-----
T ss_pred             hhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHH---HHHcCCHHHHHHHHHHcCChHHHHHHHHHhCCChHHH-----
Confidence            999999999999998877766   34555555444   6778999999999999999999999999997666222     


Q ss_pred             cCchhHHHHHHHHcc-CCh
Q psy14927        157 AGPSEQIEAATYLET-IEP  174 (1074)
Q Consensus       157 ~~~~~~~~~A~~~e~-~~~  174 (1074)
                        ++....++++|+. ++.
T Consensus       783 --~~~~~~~~~~L~~~~~~  799 (814)
T 3mkq_A          783 --NDIVTKWKENLILNGKN  799 (814)
T ss_dssp             --HHHHHHHHHHHHTTTCH
T ss_pred             --HHHHHHHHHHHHhccch
Confidence              1233467777776 443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.01  E-value=2.3e-09  Score=122.88  Aligned_cols=206  Identities=13%  Similarity=0.074  Sum_probs=64.6

Q ss_pred             HHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhCh---hhhhhHhhccCCHHHHHHHHHhc----CChHHHH
Q psy14927         37 TDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDY---LSMVRVLCFLQDFSRAAELANAS----GDTAAAY  109 (1074)
Q Consensus        37 ~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~---~~~vr~l~~~~~~~~a~~i~~~~----~~~~~~~  109 (1074)
                      .+++.++..+.++|.+|..+|+.+...|++++|+++|.++.|+   ..+++.++.+|++++|.+..+..    ++.....
T Consensus        19 ld~A~~fae~~~~~~vWs~La~A~l~~g~~~eAIdsfika~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~   98 (449)
T 1b89_A           19 LDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVET   98 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHH
Confidence            3444444444445667777777777777777777777777774   44444466677777776654422    1223344


Q ss_pred             HHHHHHHhcCChHHHHHHHHHhC--ChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHcc-CChhHHHHHHHHhCC
Q psy14927        110 HLARQYENSGQFDEAIHFYSVAG--SCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLET-IEPDKAVLLYHKAGA  186 (1074)
Q Consensus       110 ~la~~~~~~g~~~~Ai~~y~~a~--~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~-~~~~~A~~ly~kaG~  186 (1074)
                      .++..|.+.|++.++.+||...+  .|..--..|-..|++++...+-...  +-+...|.-+-. +++++|+..|.||++
T Consensus        99 ~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--~n~~~LA~~L~~Lg~yq~AVea~~KA~~  176 (449)
T 1b89_A           99 ELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--SNFGRLASTLVHLGEYQAAVDGARKANS  176 (449)
T ss_dssp             ----------CHHHHTTTTTCC----------------CTTTHHHHHHHT--TCHHHHHHHHHTTTCHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--hhHHHHHHHHHHhccHHHHHHHHHHcCC
Confidence            55666666666666666654321  2222222222333333332222111  122244444444 556666666666666


Q ss_pred             h---HHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcCCCCCChhHHHHHHHHHH
Q psy14927        187 L---HKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPELLKSIISFYS  263 (1074)
Q Consensus       187 ~---~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~~~~~~~~~~~~i~~~Y~  263 (1074)
                      +   ..++..|..                    .|+++.+                ......+  ...|+....++.+|.
T Consensus       177 ~~~Wk~v~~aCv~--------------------~~ef~lA----------------~~~~l~L--~~~ad~l~~lv~~Ye  218 (449)
T 1b89_A          177 TRTWKEVCFACVD--------------------GKEFRLA----------------QMCGLHI--VVHADELEELINYYQ  218 (449)
T ss_dssp             HHHHHHHHHHHHH--------------------TTCHHHH----------------HHTTTTT--TTCHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHH--------------------cCcHHHH----------------HHHHHHH--HhCHhhHHHHHHHHH
Confidence            6   555555555                    4555444                2333323  367788888999999


Q ss_pred             ccCCHHHHHHHHHHHHhHH
Q psy14927        264 KGKAPHLLANFYVSCAQVE  282 (1074)
Q Consensus       264 k~~~~~~aa~~~~~~a~~e  282 (1074)
                      ++|.|++|.+++...-..|
T Consensus       219 k~G~~eEai~lLe~aL~le  237 (449)
T 1b89_A          219 DRGYFEELITMLEAALGLE  237 (449)
T ss_dssp             HTTCHHHHHHHHHHHTTST
T ss_pred             HCCCHHHHHHHHHHHhCCc
Confidence            9999999999988886655

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=98.97  E-value=1.9e-07  Score=106.88  Aligned_cols=309  Identities=15%  Similarity=0.098  Sum_probs=182.7

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccchhhh-------Hhh--hcHHHHHHHhhc-----CCChHHHHHHHHHHHhccCHHHHH
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQHVPR-------MLL--ENTDKLEKYIIQ-----SKDPVLLKWWAQYIESTEDMDLAM   70 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~~~~~-------~~~--~~~~~~~~~~~~-----~~~~~l~~~~a~~~e~~~~~~~A~   70 (1074)
                      .+-+.|++++|++.|+++-..+..-+.       +++  ++++++..+...     +.++..|..+|..+...|++++|.
T Consensus         8 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~   87 (388)
T 1w3b_A            8 REYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAI   87 (388)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence            456789999999999987544322221       112  356666555543     567889999999999999999999


Q ss_pred             HHHHHhhC--------hhhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhcCChHHHHHHHHHhCCh---
Q psy14927         71 KYYEEARD--------YLSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSC---  134 (1074)
Q Consensus        71 ~~y~~a~d--------~~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~---  134 (1074)
                      ++|.++-.        +..+..++...|++++|.+..+     .+.+......+|..+...|++++|+++|.++-..   
T Consensus        88 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  167 (388)
T 1w3b_A           88 EHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN  167 (388)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            99998632        3456677999999999988765     3556677889999999999999999998764211   


Q ss_pred             -----HHHHHHHHHhCchHHHHHHh---hhcCc---hhHHHHHHHHccCChhHHHHHHHHhCChHHHHHHHHhhcc--CC
Q psy14927        135 -----GNAVRLCKEQALDDQLWNLA---LSAGP---SEQIEAATYLETIEPDKAVLLYHKAGALHKALDLAFKLTL--SN  201 (1074)
Q Consensus       135 -----~~A~~la~~~~~~~~~~~l~---~~~~~---~~~~~~A~~~e~~~~~~A~~ly~kaG~~~kAl~l~~~~~~--~~  201 (1074)
                           ..--.+....|..+......   ....|   +.+...|            .+|...|++.+|+..+.+.-.  ++
T Consensus       168 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg------------~~~~~~~~~~~A~~~~~~al~~~p~  235 (388)
T 1w3b_A          168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLG------------NVLKEARIFDRAVAAYLRALSLSPN  235 (388)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH------------HHHHTTTCTTHHHHHHHHHHHHCTT
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH------------HHHHHcCCHHHHHHHHHHHHhhCcC
Confidence                 11111111222222222111   11111   1122222            333334444444444433210  11


Q ss_pred             cchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHH---
Q psy14927        202 SGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSC---  278 (1074)
Q Consensus       202 ~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~---  278 (1074)
                      +. ..+..-..++.+.|+.+.++.....+..             . ...+|.....+...|.+.|.+++|...|..+   
T Consensus       236 ~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~-------------~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  300 (388)
T 1w3b_A          236 HA-VVHGNLACVYYEQGLIDLAIDTYRRAIE-------------L-QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL  300 (388)
T ss_dssp             CH-HHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------T-CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh-------------h-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            10 1111223344556666665544332211             1 2334566667777788888888777655544   


Q ss_pred             -----------HhHHHHhhcCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhcCChHHHhhHHHHHHHHH
Q psy14927        279 -----------AQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGNYEKGLGALNEAKRCL  347 (1074)
Q Consensus       279 -----------a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  347 (1074)
                                 +... ...|+|++|...+.++++.       .|...  .....+..++.+ .|+++.|+..|.++-.  
T Consensus       301 ~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~-------~p~~~--~~~~~l~~~~~~-~g~~~~A~~~~~~a~~--  367 (388)
T 1w3b_A          301 CPTHADSLNNLANIK-REQGNIEEAVRLYRKALEV-------FPEFA--AAHSNLASVLQQ-QGKLQEALMHYKEAIR--  367 (388)
T ss_dssp             CTTCHHHHHHHHHHH-HTTTCHHHHHHHHHHHTTS-------CTTCH--HHHHHHHHHHHT-TTCCHHHHHHHHHHHT--
T ss_pred             CcccHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhc-------CCCcH--HHHHHHHHHHHH-cCCHHHHHHHHHHHHh--
Confidence                       4444 5678888888887777642       12111  112234556667 7999999999988754  


Q ss_pred             hhccCcc
Q psy14927        348 LKHNDSM  354 (1074)
Q Consensus       348 ~~~~~~~  354 (1074)
                       ..|+..
T Consensus       368 -~~p~~~  373 (388)
T 1w3b_A          368 -ISPTFA  373 (388)
T ss_dssp             -TCTTCH
T ss_pred             -hCCCCH
Confidence             456544

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.93  E-value=6.8e-07  Score=108.46  Aligned_cols=321  Identities=12%  Similarity=0.049  Sum_probs=179.0

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchh------hhHhh--hcHHHHHHHhhcC--C-------------------ChHHHHHH
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHV------PRMLL--ENTDKLEKYIIQS--K-------------------DPVLLKWW   56 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~------~~~~~--~~~~~~~~~~~~~--~-------------------~~~l~~~~   56 (1074)
                      +...|++++|+.+|+++.......      ..+|.  ++++++..++.+.  .                   +...|...
T Consensus       127 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  206 (597)
T 2xpi_A          127 YCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLR  206 (597)
T ss_dssp             HHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHH
T ss_pred             HHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHH
Confidence            456788888888888874322111      33333  4777777777742  2                   25577788


Q ss_pred             HHHHHhccCHHHHHHHHHHhhChh----------------------------------------------hhhhHhhccC
Q psy14927         57 AQYIESTEDMDLAMKYYEEARDYL----------------------------------------------SMVRVLCFLQ   90 (1074)
Q Consensus        57 a~~~e~~~~~~~A~~~y~~a~d~~----------------------------------------------~~vr~l~~~~   90 (1074)
                      +..+...|++++|.++|.++-...                                              .++..|+..|
T Consensus       207 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g  286 (597)
T 2xpi_A          207 GQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHED  286 (597)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcc
Confidence            888889999999999888863211                                              1144466778


Q ss_pred             CHHHHHHHHHh----cCChHHHHHHHHHHHhcCChHHHHHHHHHhC--------ChHHHHHHHHHhCchHHHHHHhh---
Q psy14927         91 DFSRAAELANA----SGDTAAAYHLARQYENSGQFDEAIHFYSVAG--------SCGNAVRLCKEQALDDQLWNLAL---  155 (1074)
Q Consensus        91 ~~~~a~~i~~~----~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~--------~~~~A~~la~~~~~~~~~~~l~~---  155 (1074)
                      ++++|.++.++    ..+......++..|.+.|++++|+++|.++-        .|..-+.+..+.|..++...+..   
T Consensus       287 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  366 (597)
T 2xpi_A          287 ELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLV  366 (597)
T ss_dssp             HHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            88888888774    2567778889999999999999988887642        12223333334444444333321   


Q ss_pred             hcCc---hhHHHHHHHHcc-CChhHHHH---------------------HHHHhCChHHHHHHHHhhccCC-cchHHHHH
Q psy14927        156 SAGP---SEQIEAATYLET-IEPDKAVL---------------------LYHKAGALHKALDLAFKLTLSN-SGLVFQIK  209 (1074)
Q Consensus       156 ~~~~---~~~~~~A~~~e~-~~~~~A~~---------------------ly~kaG~~~kAl~l~~~~~~~~-~~~~~~~~  209 (1074)
                      ...+   ..+...+..+.. +++++|..                     .|.+.|++.+|++++.+.-..+ .....+..
T Consensus       367 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  446 (597)
T 2xpi_A          367 DRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLF  446 (597)
T ss_dssp             HHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHH
T ss_pred             hhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHH
Confidence            1111   112222222222 33333333                     3334455555555544321100 00011111


Q ss_pred             HHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHH-----------
Q psy14927        210 AMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSC-----------  278 (1074)
Q Consensus       210 a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~-----------  278 (1074)
                      -..++.+.|+.++++.+...+..             . ...+|.....+...|.+.|.+++|..++..+           
T Consensus       447 l~~~~~~~g~~~~A~~~~~~~~~-------------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p  512 (597)
T 2xpi_A          447 LGMQHMQLGNILLANEYLQSSYA-------------L-FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNE  512 (597)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHH-------------H-CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCS
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHH-------------h-CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccch
Confidence            22233344444444433332211             1 1234555666667777777777766555554           


Q ss_pred             ----------HhHHHHhhcCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhcCChHHHhhHHHHHHHHHh
Q psy14927        279 ----------AQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGNYEKGLGALNEAKRCLL  348 (1074)
Q Consensus       279 ----------a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  348 (1074)
                                +... ...|+|+.|...+.++++.-    ...+     .....+..+|.+ .|+++.|...|.++-..  
T Consensus       513 ~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~----p~~~-----~~~~~l~~~~~~-~g~~~~A~~~~~~~l~~--  579 (597)
T 2xpi_A          513 KPWAATWANLGHAY-RKLKMYDAAIDALNQGLLLS----TNDA-----NVHTAIALVYLH-KKIPGLAITHLHESLAI--  579 (597)
T ss_dssp             GGGHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHS----SCCH-----HHHHHHHHHHHH-TTCHHHHHHHHHHHHHH--
T ss_pred             hhHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHhC----CCCh-----HHHHHHHHHHHH-hCCHHHHHHHHHHHHhc--
Confidence                      3333 45688888888888776542    1112     122234566777 79999999999887554  


Q ss_pred             hccCcc
Q psy14927        349 KHNDSM  354 (1074)
Q Consensus       349 ~~~~~~  354 (1074)
                       .|++.
T Consensus       580 -~p~~~  584 (597)
T 2xpi_A          580 -SPNEI  584 (597)
T ss_dssp             -CTTCH
T ss_pred             -CCCCh
Confidence             56543

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=98.88  E-value=1.2e-08  Score=101.85  Aligned_cols=121  Identities=13%  Similarity=0.077  Sum_probs=101.6

Q ss_pred             hcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHH---hcCChHHHHHH
Q psy14927         35 ENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELAN---ASGDTAAAYHL  111 (1074)
Q Consensus        35 ~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~---~~~~~~~~~~l  111 (1074)
                      ++++.+.++....+++..|+++|+.+.++|+++.|++||.++||+.++--+|.-.|+.++..++++   ..++...+++.
T Consensus        19 g~l~~A~e~a~~l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~g~~n~af~~   98 (177)
T 3mkq_B           19 GNLDAALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTREDFGSMLLN   98 (177)
T ss_dssp             TCHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHhCCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHCccHHHHHHH
Confidence            466666666666678999999999999999999999999999999887777999999998888776   34555555554


Q ss_pred             HHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcC
Q psy14927        112 ARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAG  158 (1074)
Q Consensus       112 a~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~  158 (1074)
                         +.-.||+++++++|+++|+|.+|.-+|+.+|..+..-++....+
T Consensus        99 ---~l~lGdv~~~i~lL~~~~r~~eA~~~A~t~g~~~~a~~~~~~~~  142 (177)
T 3mkq_B           99 ---TFYNNSTKERSSIFAEGGSLPLAYAVAKANGDEAAASAFLEQAE  142 (177)
T ss_dssp             ---HHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             ---HHHcCCHHHHHHHHHHCCChHHHHHHHHHcCcHHHHHHHHHHhC
Confidence               45689999999999999999999999999999888877765433

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.87  E-value=3.8e-06  Score=101.78  Aligned_cols=310  Identities=14%  Similarity=0.049  Sum_probs=165.8

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHhh-------ChhhhhhHhhccCCHHHHHHHHHh--cCC----------------
Q psy14927         50 PVLLKWWAQYIESTEDMDLAMKYYEEAR-------DYLSMVRVLCFLQDFSRAAELANA--SGD----------------  104 (1074)
Q Consensus        50 ~~l~~~~a~~~e~~~~~~~A~~~y~~a~-------d~~~~vr~l~~~~~~~~a~~i~~~--~~~----------------  104 (1074)
                      +..+..+++.+...|++++|.+.|.++-       -+..++++|+..|++++|.++..+  +..                
T Consensus       117 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (597)
T 2xpi_A          117 PNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGI  196 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSC
T ss_pred             chHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccccccccccccc
Confidence            4556667888888888888888888762       124556668888888888887762  222                


Q ss_pred             ---hHHHHHHHHHHHhcCChHHHHHHHHHhC-----ChHHHHHHHHHhCchHH--------------------H-----H
Q psy14927        105 ---TAAAYHLARQYENSGQFDEAIHFYSVAG-----SCGNAVRLCKEQALDDQ--------------------L-----W  151 (1074)
Q Consensus       105 ---~~~~~~la~~~~~~g~~~~Ai~~y~~a~-----~~~~A~~la~~~~~~~~--------------------~-----~  151 (1074)
                         ....+.++..|.+.|++++|+++|.++-     .++--..++.-.-....                    .     .
T Consensus       197 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  276 (597)
T 2xpi_A          197 KLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYM  276 (597)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHH
Confidence               4567788888888888888888887652     22221222211100000                    0     0


Q ss_pred             HHhhh-cCchhHHHHHHHHcc-C----C---hhHHHHHHHHhCChHHHHHHHHhhcc---CC------------------
Q psy14927        152 NLALS-AGPSEQIEAATYLET-I----E---PDKAVLLYHKAGALHKALDLAFKLTL---SN------------------  201 (1074)
Q Consensus       152 ~l~~~-~~~~~~~~~A~~~e~-~----~---~~~A~~ly~kaG~~~kAl~l~~~~~~---~~------------------  201 (1074)
                      .++.. .....+.++-.+|++ .    +   +..-+..|.+.|++.+|++++.+.-.   .+                  
T Consensus       277 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  356 (597)
T 2xpi_A          277 LKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKN  356 (597)
T ss_dssp             TTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHH
T ss_pred             HHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHH
Confidence            00000 011112222223322 0    0   12233344444555555444443210   00                  


Q ss_pred             --------------cchHHHHHHHHHHhcCCChhhHHHhhhhc-----chHHHHHH-------------HHHHHhcC--C
Q psy14927        202 --------------SGLVFQIKAMKCLLKSGDTNKIIFFAGVS-----RMKEIYVM-------------AANYLQSS--D  247 (1074)
Q Consensus       202 --------------~~~~~~~~a~k~l~~~~~~~~~i~~a~~~-----r~~~l~~~-------------aa~yl~~~--~  247 (1074)
                                    .....+..-..++.+.|+.++++.+...+     .....|..             |..+++..  .
T Consensus       357 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  436 (597)
T 2xpi_A          357 KLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL  436 (597)
T ss_dssp             HHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                          00011222234456667776665554432     12333333             33333221  1


Q ss_pred             CCCChhHHHHHHHHHHccCCHHHHHHHHHHH--------------HhHHHHhhcCHHHHHHHHHHHHHHHHhcCCCchHH
Q psy14927        248 WKSQPELLKSIISFYSKGKAPHLLANFYVSC--------------AQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYET  313 (1074)
Q Consensus       248 ~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~--------------a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~  313 (1074)
                      ...++.....+...|.+.|.+++|...+..+              +... ...|+|++|...+.++++...+.+......
T Consensus       437 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~  515 (597)
T 2xpi_A          437 FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVA-FNKSDMQTAINHFQNALLLVKKTQSNEKPW  515 (597)
T ss_dssp             TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHSCCCSGGG
T ss_pred             CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH-HHhCCHHHHHHHHHHHHHhhhccccchhhH
Confidence            2335566677788888999998887666554              3344 456899999999999888776644332210


Q ss_pred             HHHHHHHHHHHHHHhhcCChHHHhhHHHHHHHHHhhccCcchhHHHHHHHHHHHH
Q psy14927        314 LKSSVVEKLAEVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKIAE  368 (1074)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  368 (1074)
                      .  .....+..++.+ .|+++.|...+.++-..   .|++.. ++ .....++.+
T Consensus       516 ~--~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~---~p~~~~-~~-~~l~~~~~~  562 (597)
T 2xpi_A          516 A--ATWANLGHAYRK-LKMYDAAIDALNQGLLL---STNDAN-VH-TAIALVYLH  562 (597)
T ss_dssp             H--HHHHHHHHHHHH-TTCHHHHHHHHHHHHHH---SSCCHH-HH-HHHHHHHHH
T ss_pred             H--HHHHHHHHHHHH-hcCHHHHHHHHHHHHHh---CCCChH-HH-HHHHHHHHH
Confidence            0  112234556667 69999999999887654   465543 22 225555543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.82  E-value=1.8e-06  Score=95.12  Aligned_cols=272  Identities=16%  Similarity=0.137  Sum_probs=160.8

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCC----hHHHHHHHHHHHhccCHHHHHHHHHHhhCh-
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKD----PVLLKWWAQYIESTEDMDLAMKYYEEARDY-   79 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~-   79 (1074)
                      .+...|++++|+.+|+++-..+                    +++    ..++..+|..+...|++++|.++|.++-+. 
T Consensus        14 ~~~~~g~~~~A~~~~~~al~~~--------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   73 (338)
T 3ro2_A           14 RLCKSGDCRAGVSFFEAAVQVG--------------------TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA   73 (338)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC--------------------CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHhhC--------------------cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            4567899999999999876432                    112    246677788888899999999888775433 


Q ss_pred             -------------hhhhhHhhccCCHHHHHHHHHh-------cCC----hHHHHHHHHHHHhcCC---------------
Q psy14927         80 -------------LSMVRVLCFLQDFSRAAELANA-------SGD----TAAAYHLARQYENSGQ---------------  120 (1074)
Q Consensus        80 -------------~~~vr~l~~~~~~~~a~~i~~~-------~~~----~~~~~~la~~~~~~g~---------------  120 (1074)
                                   ..+.+++..+|++++|.+..++       .++    ..+...+|..|...|+               
T Consensus        74 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  153 (338)
T 3ro2_A           74 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPE  153 (338)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCH
T ss_pred             hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhh
Confidence                         3344557778888888776553       233    2256688899999999               


Q ss_pred             -----hHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHcc-CChhHHHHHHHHhCChHHHHHHH
Q psy14927        121 -----FDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLET-IEPDKAVLLYHKAGALHKALDLA  194 (1074)
Q Consensus       121 -----~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~-~~~~~A~~ly~kaG~~~kAl~l~  194 (1074)
                           +++|+++|      ++|+.+++..+......        ..+...|..+.. +++++|..+|.+      |++++
T Consensus       154 ~a~~~~~~A~~~~------~~a~~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~A~~~~~~------a~~~~  213 (338)
T 3ro2_A          154 DVRNALQAAVDLY------EENLSLVTALGDRAAQG--------RAFGNLGNTHYLLGNFRDAVIAHEQ------RLLIA  213 (338)
T ss_dssp             HHHHHHHHHHHHH------HHHHHHHHHHTCHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHH------HHHHH
T ss_pred             hHHHHHHHHHHHH------HHHHHHHHhcCCHHHHH--------HHHHHHHHHHHHhCCHHHHHHHHHH------HHHHH
Confidence                 77777766      45666666553222111        112233433333 555555555533      23332


Q ss_pred             HhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcC-CCCCChhHHHHHHHHHHccCCHHHHHH
Q psy14927        195 FKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSS-DWKSQPELLKSIISFYSKGKAPHLLAN  273 (1074)
Q Consensus       195 ~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~-~~~~~~~~~~~i~~~Y~k~~~~~~aa~  273 (1074)
                      -+                    .++...         ....+...+..+... +++.-...+..++......+.....+.
T Consensus       214 ~~--------------------~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  264 (338)
T 3ro2_A          214 KE--------------------FGDKAA---------ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ  264 (338)
T ss_dssp             HH--------------------HTCHHH---------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             Hh--------------------cCChHH---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence            22                    111110         011122222222221 111112333444445555555555667


Q ss_pred             HHHHHHhHHHHhhcCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhcCChHHHhhHHHHHHHHHhhc
Q psy14927        274 FYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGNYEKGLGALNEAKRCLLKH  350 (1074)
Q Consensus       274 ~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  350 (1074)
                      .+...+... ...|+|++|...+.+++......+....   .......+..+|.+ .|+++.|...+.++-....+.
T Consensus       265 ~~~~la~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~~~---~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~  336 (338)
T 3ro2_A          265 SCYSLGNTY-TLLQDYEKAIDYHLKHLAIAQELKDRIG---EGRACWSLGNAYTA-LGNHDQAMHFAEKHLEISREV  336 (338)
T ss_dssp             HHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHTCHHH---HHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHhcCCcHH---HHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHhh
Confidence            777778887 8889999999999999998877654211   12223345677778 799999999999887765443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.82  E-value=5.3e-07  Score=103.76  Aligned_cols=273  Identities=15%  Similarity=0.132  Sum_probs=161.5

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCCh----HHHHHHHHHHHhccCHHHHHHHHHHhhCh--
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDP----VLLKWWAQYIESTEDMDLAMKYYEEARDY--   79 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~a~~~e~~~~~~~A~~~y~~a~d~--   79 (1074)
                      +...|++++|+.+|+++-...                    ++++    .++..+|..+...|++++|.++|.++-..  
T Consensus        58 ~~~~g~~~~A~~~~~~al~~~--------------------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  117 (411)
T 4a1s_A           58 LCNAGDCRAGVAFFQAAIQAG--------------------TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAK  117 (411)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC--------------------CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHhc--------------------ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            456677777777777765322                    2233    46777888888999999999988776443  


Q ss_pred             ------------hhhhhHhhccCCHHHHHHHHHh-------cCC----hHHHHHHHHHHHhcCC----------------
Q psy14927         80 ------------LSMVRVLCFLQDFSRAAELANA-------SGD----TAAAYHLARQYENSGQ----------------  120 (1074)
Q Consensus        80 ------------~~~vr~l~~~~~~~~a~~i~~~-------~~~----~~~~~~la~~~~~~g~----------------  120 (1074)
                                  ..+..++..+|++++|.+..++       .++    ..+...+|..|...|+                
T Consensus       118 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~  197 (411)
T 4a1s_A          118 SMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKE  197 (411)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHH
T ss_pred             HccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhH
Confidence                        2344556778888888776552       122    2356688899999999                


Q ss_pred             -hHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHcc-CChhHHHHHHHHhCChHHHHHHHHhhc
Q psy14927        121 -FDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLET-IEPDKAVLLYHKAGALHKALDLAFKLT  198 (1074)
Q Consensus       121 -~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~-~~~~~A~~ly~kaG~~~kAl~l~~~~~  198 (1074)
                       +++|+++|.      +|+++++..+......        ..+...|..+.. +++++|..+|.+      |++++-+  
T Consensus       198 ~~~~A~~~~~------~al~~~~~~~~~~~~~--------~~~~~la~~~~~~g~~~~A~~~~~~------al~~~~~--  255 (411)
T 4a1s_A          198 ALTRAVEFYQ------ENLKLMRDLGDRGAQG--------RACGNLGNTYYLLGDFQAAIEHHQE------RLRIARE--  255 (411)
T ss_dssp             HHHHHHHHHH------HHHHHHHHHTCHHHHH--------HHHHHHHHHHHHTTCHHHHHHHHHH------HHHHHHH--
T ss_pred             HHHHHHHHHH------HHHHHHHHcCCHHHHH--------HHHHHHHHHHHHcCChHHHHHHHHH------HHHHHHh--
Confidence             777776654      4666666553222111        112233433333 455555555443      2333222  


Q ss_pred             cCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcC-CCCCChhHHHHHHHHHHccCCHHHHHHHHHH
Q psy14927        199 LSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSS-DWKSQPELLKSIISFYSKGKAPHLLANFYVS  277 (1074)
Q Consensus       199 ~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~-~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~  277 (1074)
                                        .++..         ....++...+..+... +++.--..++.++..+...+.....+..+..
T Consensus       256 ------------------~~~~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  308 (411)
T 4a1s_A          256 ------------------FGDRA---------AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYS  308 (411)
T ss_dssp             ------------------HTCHH---------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ------------------cCCcH---------HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                              11111         0111233333333332 1222223334444455554555555677777


Q ss_pred             HHhHHHHhhcCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhcCChHHHhhHHHHHHHHHhhccC
Q psy14927        278 CAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGNYEKGLGALNEAKRCLLKHND  352 (1074)
Q Consensus       278 ~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  352 (1074)
                      .+... ...|+|++|...+.+++....+.+....   .......+..+|.+ .|+++.|...|.++-....+..+
T Consensus       309 la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~  378 (411)
T 4a1s_A          309 LGNTY-TLLHEFNTAIEYHNRHLAIAQELGDRIG---EARACWSLGNAHSA-IGGHERALKYAEQHLQLAXXXXX  378 (411)
T ss_dssp             HHHHH-HHTTCHHHHHHHHHHHHHHHHHHTCHHH---HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCCHHHH
T ss_pred             HHHHH-HHcCCHHHHHHHHHHHHHHHHHCCChHH---HHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHhhccc
Confidence            78887 7889999999999999998887653211   12222345677778 79999999999998887555443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.79  E-value=3.5e-06  Score=96.17  Aligned_cols=274  Identities=17%  Similarity=0.152  Sum_probs=168.0

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCC----hHHHHHHHHHHHhccCHHHHHHHHHHhhCh-
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKD----PVLLKWWAQYIESTEDMDLAMKYYEEARDY-   79 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~-   79 (1074)
                      .+...|++++|+.+|+++-...                    +++    ..++..+|..+...|++++|..+|.++-+. 
T Consensus        18 ~~~~~g~~~~A~~~~~~al~~~--------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   77 (406)
T 3sf4_A           18 RLCKSGDCRAGVSFFEAAVQVG--------------------TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA   77 (406)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC--------------------CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHhcC--------------------cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            4567789999999998876332                    122    246778899999999999999988875332 


Q ss_pred             -------------hhhhhHhhccCCHHHHHHHHHh-------cCC----hHHHHHHHHHHHhcCC---------------
Q psy14927         80 -------------LSMVRVLCFLQDFSRAAELANA-------SGD----TAAAYHLARQYENSGQ---------------  120 (1074)
Q Consensus        80 -------------~~~vr~l~~~~~~~~a~~i~~~-------~~~----~~~~~~la~~~~~~g~---------------  120 (1074)
                                   ..+..++..+|++++|.+..++       .++    ..+...+|..|...|+               
T Consensus        78 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~  157 (406)
T 3sf4_A           78 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPE  157 (406)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCH
T ss_pred             HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhh
Confidence                         3345567778888888876542       233    2356688899999999               


Q ss_pred             -----hHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHcc-CChhHHHHHHHHhCChHHHHHHH
Q psy14927        121 -----FDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLET-IEPDKAVLLYHKAGALHKALDLA  194 (1074)
Q Consensus       121 -----~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~-~~~~~A~~ly~kaG~~~kAl~l~  194 (1074)
                           +++|+++|      ++|+++++..+......        ..+...|..+.. +++++|..+|.+      |++++
T Consensus       158 ~a~~~~~~A~~~~------~~al~~~~~~~~~~~~~--------~~~~~la~~~~~~g~~~~A~~~~~~------al~~~  217 (406)
T 3sf4_A          158 EVRDALQAAVDFY------EENLSLVTALGDRAAQG--------RAFGNLGNTHYLLGNFRDAVIAHEQ------RLLIA  217 (406)
T ss_dssp             HHHHHHHHHHHHH------HHHHHHHHHTTCHHHHH--------HHHHHHHHHHHHHTBHHHHHHHHHH------HHHHH
T ss_pred             hHHHHHHHHHHHH------HHHHHHHHhccCcHHHH--------HHHHHHHHHHHHccCHHHHHHHHHH------HHHHH
Confidence                 77777766      45566666653222111        112233333333 445555554432      23332


Q ss_pred             HhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcC-CCCCChhHHHHHHHHHHccCCHHHHHH
Q psy14927        195 FKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSS-DWKSQPELLKSIISFYSKGKAPHLLAN  273 (1074)
Q Consensus       195 ~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~-~~~~~~~~~~~i~~~Y~k~~~~~~aa~  273 (1074)
                      -+                    .++...         ....+...+..+... +++..-..+..++..+...+.....+.
T Consensus       218 ~~--------------------~~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  268 (406)
T 3sf4_A          218 KE--------------------FGDKAA---------ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ  268 (406)
T ss_dssp             HH--------------------TTCHHH---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             Hh--------------------cCCcHH---------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHH
Confidence            22                    222111         011223333333222 122222334444555555555555677


Q ss_pred             HHHHHHhHHHHhhcCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhcCChHHHhhHHHHHHHHHhhccC
Q psy14927        274 FYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGNYEKGLGALNEAKRCLLKHND  352 (1074)
Q Consensus       274 ~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  352 (1074)
                      .+...+... ...|+|++|...+.+++....+.+....   .......+..+|.+ .|+++.|+..+.++-....+.++
T Consensus       269 ~~~~la~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~~~---~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~  342 (406)
T 3sf4_A          269 SCYSLGNTY-TLLQDYEKAIDYHLKHLAIAQELNDRIG---EGRACWSLGNAYTA-LGNHDQAMHFAEKHLEISREVGD  342 (406)
T ss_dssp             HHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHH-HHhCcHHHHHHHHHHHHHHHHhcCCcHH---HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcC
Confidence            777888887 7889999999999999998887654211   12222345677778 79999999999999988777754

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.79  E-value=2.8e-09  Score=123.44  Aligned_cols=100  Identities=12%  Similarity=0.086  Sum_probs=67.2

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccccccccc--------h-------hhhhh----hhh---------H--
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLN--------L-------ETMMG----TKS---------A--  839 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~--------~-------~~~~~----~~~---------~--  839 (1074)
                      .+|+||||||+|+.+|+.+++     +++|+.+..+..+.        +       ..+..    ...         .  
T Consensus         5 ~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   84 (401)
T 2gqf_A            5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDFI   84 (401)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHHHH
Confidence            359999999999999999998     78888765432110        0       00000    000         0  


Q ss_pred             ----------------------HHhhhhhhHHHHhhhCCeEEEee-eEEEec------CCeEEEEeCCCCeeEEEcCeEE
Q psy14927        840 ----------------------AVKALTGGIAHLFKSNKVTQLNG-HGKITG------PNTVTVIKSDGSTEEVKTKNIL  890 (1074)
Q Consensus       840 ----------------------~~~~l~~~~~~~l~~~gV~~~~g-~v~~id------~~~~~v~~~~G~~~~i~~d~lI  890 (1074)
                                            ....+...+.+.+++.||+++.+ .|+.+.      .+.+.|.+.+|   ++.+|+||
T Consensus        85 ~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g---~i~ad~VV  161 (401)
T 2gqf_A           85 SLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNST---QWQCKNLI  161 (401)
T ss_dssp             HHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTE---EEEESEEE
T ss_pred             HHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCC---EEECCEEE
Confidence                                  11334455677777889999999 466554      34567776665   69999999


Q ss_pred             EccCCCC
Q psy14927        891 IATGSEV  897 (1074)
Q Consensus       891 IATG~~p  897 (1074)
                      +|||+.+
T Consensus       162 lAtG~~s  168 (401)
T 2gqf_A          162 VATGGLS  168 (401)
T ss_dssp             ECCCCSS
T ss_pred             ECCCCcc
Confidence            9999987

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=98.74  E-value=9.9e-07  Score=100.89  Aligned_cols=273  Identities=14%  Similarity=0.064  Sum_probs=164.0

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchhhhHh---------hhcHHHHHHHhhc-----CCChHHHHHHHHHHHhccCHHHHHH
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHVPRML---------LENTDKLEKYIIQ-----SKDPVLLKWWAQYIESTEDMDLAMK   71 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~---------~~~~~~~~~~~~~-----~~~~~l~~~~a~~~e~~~~~~~A~~   71 (1074)
                      +...|++++|+.+|+++-..+...+..+         .+++.++.++..+     ++++..+..+|..+...|++++|.+
T Consensus        43 ~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  122 (388)
T 1w3b_A           43 HFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ  122 (388)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence            3467999999999998765554333333         1467766666554     5677789999999999999999999


Q ss_pred             HHHHhhCh--------hhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHH
Q psy14927         72 YYEEARDY--------LSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAV  138 (1074)
Q Consensus        72 ~y~~a~d~--------~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~  138 (1074)
                      +|.++-..        ..+..++..+|++++|.+..+     .+.+..+...+|..|...|++++|+++|.++-..+   
T Consensus       123 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---  199 (388)
T 1w3b_A          123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD---  199 (388)
T ss_dssp             HHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---
Confidence            99986432        345667888999999998765     34567788899999999999999999987752211   


Q ss_pred             HHHHHhCchHHHHHHhhh-cCchhHHHHHHHHcc------CC---hhHHHHHHHHhCChHHHHHHHHhhccCCcc-hHHH
Q psy14927        139 RLCKEQALDDQLWNLALS-AGPSEQIEAATYLET------IE---PDKAVLLYHKAGALHKALDLAFKLTLSNSG-LVFQ  207 (1074)
Q Consensus       139 ~la~~~~~~~~~~~l~~~-~~~~~~~~~A~~~e~------~~---~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~-~~~~  207 (1074)
                           -+..+.+..++.. .....+.++-.+|++      .+   +..-+..|.+.|++.+|++.+.+.-..+.. ...+
T Consensus       200 -----p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  274 (388)
T 1w3b_A          200 -----PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY  274 (388)
T ss_dssp             -----TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH
T ss_pred             -----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Confidence                 1111112222100 000000111111110      11   123445666666777776666553211111 0012


Q ss_pred             HHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHH---------
Q psy14927        208 IKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSC---------  278 (1074)
Q Consensus       208 ~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~---------  278 (1074)
                      ..-..++.+.|+.++++.+...+..         .     ...++.....+..+|.+.|.+++|..++..+         
T Consensus       275 ~~l~~~~~~~g~~~~A~~~~~~al~---------~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  340 (388)
T 1w3b_A          275 CNLANALKEKGSVAEAEDCYNTALR---------L-----CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA  340 (388)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHH---------H-----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHh---------h-----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence            2223455667777776655443321         1     1234455555666666666666666555443         


Q ss_pred             -----HhHHHHhhcCHHHHHHHHHHHHH
Q psy14927        279 -----AQVEIDEFGNYEKGLGALNEAKR  301 (1074)
Q Consensus       279 -----a~~ei~e~~~y~~a~~~l~~a~~  301 (1074)
                           +..- ..-|+|++|...+.++++
T Consensus       341 ~~~~l~~~~-~~~g~~~~A~~~~~~a~~  367 (388)
T 1w3b_A          341 AHSNLASVL-QQQGKLQEALMHYKEAIR  367 (388)
T ss_dssp             HHHHHHHHH-HTTTCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHH-HHcCCHHHHHHHHHHHHh
Confidence                 4444 567888888888777764

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.71  E-value=2.6e-06  Score=100.72  Aligned_cols=309  Identities=10%  Similarity=-0.041  Sum_probs=179.7

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccchh------hhHhh--hcHHHHHHHhhc-----CCChHHHHHHHHHHHhccCHHHHHH
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQHV------PRMLL--ENTDKLEKYIIQ-----SKDPVLLKWWAQYIESTEDMDLAMK   71 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~~~------~~~~~--~~~~~~~~~~~~-----~~~~~l~~~~a~~~e~~~~~~~A~~   71 (1074)
                      .+...|++++|+.+|+++-..+...      ..+++  +++.++.+++.+     ++++..+..+|..+...|++++|..
T Consensus        15 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   94 (514)
T 2gw1_A           15 QFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMF   94 (514)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            4667899999999999997654332      22222  477766666654     5778899999999999999999999


Q ss_pred             HHHHhhChhh----------------------------------------------------------------------
Q psy14927         72 YYEEARDYLS----------------------------------------------------------------------   81 (1074)
Q Consensus        72 ~y~~a~d~~~----------------------------------------------------------------------   81 (1074)
                      +|.++-....                                                                      
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (514)
T 2gw1_A           95 DLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPE  174 (514)
T ss_dssp             HHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCC
T ss_pred             HHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHH
Confidence            9988632211                                                                      


Q ss_pred             -----------------hhhHhh---ccCCHHHHHHHHHh-------------------cCChHHHHHHHHHHHhcCChH
Q psy14927         82 -----------------MVRVLC---FLQDFSRAAELANA-------------------SGDTAAAYHLARQYENSGQFD  122 (1074)
Q Consensus        82 -----------------~vr~l~---~~~~~~~a~~i~~~-------------------~~~~~~~~~la~~~~~~g~~~  122 (1074)
                                       ...++.   ..|++++|.++.++                   +.+..+.+.+|..+...|+++
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (514)
T 2gw1_A          175 LTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPL  254 (514)
T ss_dssp             CCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHH
Confidence                             111112   37888888877652                   223346678889999999999


Q ss_pred             HHHHHHHHhCChHHHHHHHHHhCchHHHHHHh---hhcCc-hhHH-HHHHHHcc--CC---hhHHHHHHHHhCChHHHHH
Q psy14927        123 EAIHFYSVAGSCGNAVRLCKEQALDDQLWNLA---LSAGP-SEQI-EAATYLET--IE---PDKAVLLYHKAGALHKALD  192 (1074)
Q Consensus       123 ~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~---~~~~~-~~~~-~~A~~~e~--~~---~~~A~~ly~kaG~~~kAl~  192 (1074)
                      +|+++|.++-..+.        + .+.+..++   ...+. +.-. .+-+.++.  .+   +..-+.+|.+.|++.+|+.
T Consensus       255 ~A~~~~~~~l~~~~--------~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  325 (514)
T 2gw1_A          255 GAHEDIKKAIELFP--------R-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGK  325 (514)
T ss_dssp             HHHHHHHHHHHHCC--------C-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHH
T ss_pred             HHHHHHHHHHhhCc--------c-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            99988876422110        0 11111111   11000 0000 00011111  01   2334556666677777777


Q ss_pred             HHHhhccCCc-chHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHccCCHHHH
Q psy14927        193 LAFKLTLSNS-GLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLL  271 (1074)
Q Consensus       193 l~~~~~~~~~-~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~a  271 (1074)
                      .+.+.-..+. ....+..-..++.+.|+.++++.+...+..         .     ...++.....+...|.+.|.+++|
T Consensus       326 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------~-----~~~~~~~~~~la~~~~~~~~~~~A  391 (514)
T 2gw1_A          326 DFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKR---------K-----FPEAPEVPNFFAEILTDKNDFDKA  391 (514)
T ss_dssp             HHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHH---------H-----STTCSHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------H-----cccCHHHHHHHHHHHHHCCCHHHH
Confidence            6655321111 111223334455667777666554433221         0     123445556667777777777777


Q ss_pred             HHHHHHH--------------------HhHHHHh---hcCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHh
Q psy14927        272 ANFYVSC--------------------AQVEIDE---FGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEID  328 (1074)
Q Consensus       272 a~~~~~~--------------------a~~ei~e---~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  328 (1074)
                      ...+..+                    +... ..   .|+|++|...+..++..-    ...+     .....+..++.+
T Consensus       392 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~A~~~~~~a~~~~----~~~~-----~~~~~la~~~~~  461 (514)
T 2gw1_A          392 LKQYDLAIELENKLDGIYVGIAPLVGKATLL-TRNPTVENFIEATNLLEKASKLD----PRSE-----QAKIGLAQMKLQ  461 (514)
T ss_dssp             HHHHHHHHHHHHTSSSCSSCSHHHHHHHHHH-HTSCCTTHHHHHHHHHHHHHHHC----TTCH-----HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHH-hhhhhcCCHHHHHHHHHHHHHhC----cccH-----HHHHHHHHHHHH
Confidence            6555444                    3333 33   688888888888877642    1111     122244667777


Q ss_pred             hcCChHHHhhHHHHHHHHH
Q psy14927        329 EFGNYEKGLGALNEAKRCL  347 (1074)
Q Consensus       329 ~~~~~~~a~~~~~~~~~~~  347 (1074)
                       .|+++.|...|.++-..-
T Consensus       462 -~g~~~~A~~~~~~a~~~~  479 (514)
T 2gw1_A          462 -QEDIDEAITLFEESADLA  479 (514)
T ss_dssp             -TTCHHHHHHHHHHHHHHC
T ss_pred             -hcCHHHHHHHHHHHHHhc
Confidence             799999999998887653

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.71  E-value=8.7e-06  Score=90.81  Aligned_cols=126  Identities=10%  Similarity=0.019  Sum_probs=83.7

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccchhhhHh---------hhcHHHHHHHhhc-----CCChHHHHHHHHHHHhccCHHHHH
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQHVPRML---------LENTDKLEKYIIQ-----SKDPVLLKWWAQYIESTEDMDLAM   70 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~---------~~~~~~~~~~~~~-----~~~~~l~~~~a~~~e~~~~~~~A~   70 (1074)
                      .+...|++++|+..|+++-..+..-+..+         .+++.++..+..+     ++++..+..+|..+...|++++|.
T Consensus        12 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~   91 (359)
T 3ieg_A           12 KLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAE   91 (359)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHH
Confidence            46778999999999998865443322222         1356655555544     456777777888888888888888


Q ss_pred             HHHHHhhChhh-----------------------hhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHHHHHhcCChH
Q psy14927         71 KYYEEARDYLS-----------------------MVRVLCFLQDFSRAAELANA-----SGDTAAAYHLARQYENSGQFD  122 (1074)
Q Consensus        71 ~~y~~a~d~~~-----------------------~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~~~~~~g~~~  122 (1074)
                      ++|.++-....                       ..+++...|++++|.+..++     +.+......+|..|...|+++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (359)
T 3ieg_A           92 DDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPR  171 (359)
T ss_dssp             HHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHH
Confidence            88887744322                       14556677777777776652     345566667777777777777


Q ss_pred             HHHHHHHH
Q psy14927        123 EAIHFYSV  130 (1074)
Q Consensus       123 ~Ai~~y~~  130 (1074)
                      +|+++|.+
T Consensus       172 ~A~~~~~~  179 (359)
T 3ieg_A          172 KAISDLKA  179 (359)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77766654

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.69  E-value=2.6e-08  Score=106.32  Aligned_cols=143  Identities=14%  Similarity=0.139  Sum_probs=93.4

Q ss_pred             hhHHhhcCCcEEEEecCCccCC----------------CC-------CCHHHHHHHHHHHHhC-CCEEEeCceEEEEEec
Q psy14927        922 GSVWGRLGAEVTAIEFMNAIGG----------------MG-------IDGEVAKQFQRILGKQ-GMQFKLGTKVTGASKS  977 (1074)
Q Consensus       922 A~~l~~~G~~Vtlv~~~~~~~~----------------~~-------~~~~~~~~~~~~l~~~-gV~i~~~~~v~~i~~~  977 (1074)
                      |..|++.|.+|+++++......                +.       ..+.+...+.+.+++. ||+++ ++.++++..+
T Consensus        19 A~~la~~g~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~~~~~~gv~i~-~~~v~~i~~~   97 (232)
T 2cul_A           19 AFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRPLHLF-QATATGLLLE   97 (232)
T ss_dssp             HHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEEE
T ss_pred             HHHHHHCCCCEEEEecCCCcCCcccCccccccchhhHHhhhccCCCCCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEEe
Confidence            6677888999999998721100                00       1126667777888886 99999 4689999876


Q ss_pred             CCeE-EEEEeeccCCCCceEEEcCEEEEccCCcccCCcc-C--------------------ccccCcccCCCC-------
Q psy14927        978 GDNI-TVTIENVKDPTKKEELSCDALLVCVGRRPYTHNL-G--------------------LEEIGIEKDEKG------- 1028 (1074)
Q Consensus       978 ~~~~-~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l-~--------------------l~~~gl~ld~~G------- 1028 (1074)
                      ++.+ .|.+.+      +.++++|.||+|+|..++.... +                    +...|+.++...       
T Consensus        98 ~~~v~~v~~~~------g~~i~a~~VV~A~G~~s~~~~~~G~~~~~~g~~g~~~~~~l~~~l~~~g~~~~~~~~~~~~~~  171 (232)
T 2cul_A           98 GNRVVGVRTWE------GPPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLEDLSRLGFRFVEREGEVPETP  171 (232)
T ss_dssp             TTEEEEEEETT------SCCEECSEEEECCTTCSSCEEEETTEEESEEETTEECCSHHHHHHHHTTCCEEEEEEEEC---
T ss_pred             CCEEEEEEECC------CCEEECCEEEECCCCChhhceecCCccCCCCCCcccchhhhCHHHHhCCCeEEccccccCcCC
Confidence            6653 344432      3479999999999995443210 0                    112222222110       


Q ss_pred             -C-------eeeC------CCC-CCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHhhC
Q psy14927       1029 -R-------VPVN------SRF-QTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus      1029 -~-------I~Vd------~~~-~ts~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I~~ 1072 (1074)
                       .       ....      ..+ .|++||||++|||+ .......|+.+|+.+|.+|..
T Consensus       172 g~p~~~~~~~~~~~~~~~~~~~~~t~~p~iya~G~~a-~~g~~~~~~~~g~~~a~~i~~  229 (232)
T 2cul_A          172 STPGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCV-REGDYARMSEEGKRLAEHLLH  229 (232)
T ss_dssp             --CCEEEEEEEECGGGEETTTTEETTSBSEEECGGGT-SCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCccCchhhcccCCCCCccccccccccceeeeecc-cCccHHHHHHHHHHHHHHHHh
Confidence             0       0000      011 27999999999999 766888899999999999974

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.68  E-value=1.4e-05  Score=92.96  Aligned_cols=127  Identities=13%  Similarity=0.055  Sum_probs=96.3

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccchhh-------hHhh--hcHHHHHHHhhc-----CCChHHHHHHHHHHHhccCHHHHH
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQHVP-------RMLL--ENTDKLEKYIIQ-----SKDPVLLKWWAQYIESTEDMDLAM   70 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~~~~-------~~~~--~~~~~~~~~~~~-----~~~~~l~~~~a~~~e~~~~~~~A~   70 (1074)
                      .+...|++++|+.+|+++-..+..-+       ..++  +++..+..+..+     ++++..+..+|..+...|++++|.
T Consensus        35 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~  114 (450)
T 2y4t_A           35 KLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAE  114 (450)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence            35678999999999998764332222       2222  467666665554     567888999999999999999999


Q ss_pred             HHHHHhhChh-----------------------hhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHHHHHhcCChH
Q psy14927         71 KYYEEARDYL-----------------------SMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLARQYENSGQFD  122 (1074)
Q Consensus        71 ~~y~~a~d~~-----------------------~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~~~~~~g~~~  122 (1074)
                      ++|.++-...                       ....++...|++++|.+..+.     +.+......+|..|.+.|+++
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  194 (450)
T 2y4t_A          115 DDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPR  194 (450)
T ss_dssp             HHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGG
T ss_pred             HHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHH
Confidence            9999874421                       124458889999999888763     457778889999999999999


Q ss_pred             HHHHHHHHh
Q psy14927        123 EAIHFYSVA  131 (1074)
Q Consensus       123 ~Ai~~y~~a  131 (1074)
                      +|++.|.++
T Consensus       195 ~A~~~~~~~  203 (450)
T 2y4t_A          195 KAISDLKAA  203 (450)
T ss_dssp             GGHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988765

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.67  E-value=4.6e-06  Score=99.43  Aligned_cols=315  Identities=12%  Similarity=0.059  Sum_probs=178.3

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccchhhhHh---------hhcHHHHHHHhhc-----CCChHHHHHHHHHHHhccCHHHHH
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQHVPRML---------LENTDKLEKYIIQ-----SKDPVLLKWWAQYIESTEDMDLAM   70 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~---------~~~~~~~~~~~~~-----~~~~~l~~~~a~~~e~~~~~~~A~   70 (1074)
                      .+...|++++|+.+|+++-..+..-+..+         .+++.++.++..+     ++++..+..+|..+...|++++|.
T Consensus        34 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  113 (537)
T 3fp2_A           34 HFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAM  113 (537)
T ss_dssp             HHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHH
Confidence            45678999999999999876543332222         2467766666655     577889999999999999999999


Q ss_pred             HHHHHhhChhh---------------------------------------------------------------------
Q psy14927         71 KYYEEARDYLS---------------------------------------------------------------------   81 (1074)
Q Consensus        71 ~~y~~a~d~~~---------------------------------------------------------------------   81 (1074)
                      ++|........                                                                     
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (537)
T 3fp2_A          114 FDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAY  193 (537)
T ss_dssp             HHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSH
T ss_pred             HHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHH
Confidence            98853310000                                                                     


Q ss_pred             --hhhHhh------------ccCCHHHHHHHHHh-----cCChH-------HHHHHHHHHHhcCChHHHHHHHHHhCChH
Q psy14927         82 --MVRVLC------------FLQDFSRAAELANA-----SGDTA-------AAYHLARQYENSGQFDEAIHFYSVAGSCG  135 (1074)
Q Consensus        82 --~vr~l~------------~~~~~~~a~~i~~~-----~~~~~-------~~~~la~~~~~~g~~~~Ai~~y~~a~~~~  135 (1074)
                        +.+.+.            ..+++++|.++.+.     +.+..       +.+.+|..+...|++++|+++|.++-..+
T Consensus       194 ~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~  273 (537)
T 3fp2_A          194 ALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH  273 (537)
T ss_dssp             HHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence              111111            11366677666552     22322       45677788888888888888877653211


Q ss_pred             HHHHHHHHhCchHHHHHHhhh-cCchhHHHHHHHHcc------CC---hhHHHHHHHHhCChHHHHHHHHhhccCCc-ch
Q psy14927        136 NAVRLCKEQALDDQLWNLALS-AGPSEQIEAATYLET------IE---PDKAVLLYHKAGALHKALDLAFKLTLSNS-GL  204 (1074)
Q Consensus       136 ~A~~la~~~~~~~~~~~l~~~-~~~~~~~~~A~~~e~------~~---~~~A~~ly~kaG~~~kAl~l~~~~~~~~~-~~  204 (1074)
                      .        + .+.+..++.. .....+..+-.+|+.      ..   +..-+.+|.+.|++.+|+..+.+.-..+. ..
T Consensus       274 ~--------~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~  344 (537)
T 3fp2_A          274 P--------T-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV  344 (537)
T ss_dssp             C--------C-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS
T ss_pred             C--------C-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Confidence            0        0 1111222111 111111112222211      11   23345566666777777766655321110 01


Q ss_pred             HHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHhHHH-
Q psy14927        205 VFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSCAQVEI-  283 (1074)
Q Consensus       205 ~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~a~~ei-  283 (1074)
                      ..+..-..++.+.|+.++++.+...+..         .     ...++.....+..+|...|.+++|...|..+....- 
T Consensus       345 ~~~~~la~~~~~~g~~~~A~~~~~~~~~---------~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  410 (537)
T 3fp2_A          345 YPYIQLACLLYKQGKFTESEAFFNETKL---------K-----FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV  410 (537)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH---------H-----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH---------h-----CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence            1223334555667777666555433221         1     234466777778888888888888888777644320 


Q ss_pred             ------------------Hhh----------cCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhcCChHH
Q psy14927        284 ------------------DEF----------GNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGNYEK  335 (1074)
Q Consensus       284 ------------------~e~----------~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (1074)
                                        ...          |+|+.|...+..+++.-    ...+     .....+..+|.+ .|+++.
T Consensus       411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~----p~~~-----~~~~~l~~~~~~-~g~~~~  480 (537)
T 3fp2_A          411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD----PRSE-----QAKIGLAQLKLQ-MEKIDE  480 (537)
T ss_dssp             CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC----TTCH-----HHHHHHHHHHHH-TTCHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC----CCCH-----HHHHHHHHHHHH-hccHHH
Confidence                              122          77777777777766542    1112     122345677778 799999


Q ss_pred             HhhHHHHHHHHHhhccC
Q psy14927        336 GLGALNEAKRCLLKHND  352 (1074)
Q Consensus       336 a~~~~~~~~~~~~~~~~  352 (1074)
                      |+..|.++...-...+.
T Consensus       481 A~~~~~~al~~~~~~~~  497 (537)
T 3fp2_A          481 AIELFEDSAILARTMDE  497 (537)
T ss_dssp             HHHHHHHHHHHC--CHH
T ss_pred             HHHHHHHHHHhCCCcHH
Confidence            99999998876444443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.61  E-value=1.8e-05  Score=93.91  Aligned_cols=311  Identities=11%  Similarity=0.041  Sum_probs=177.9

Q ss_pred             cCCHHHHHHHHHHcCcccchh-----hhHhh------hcHHHHHHHhhc---CCChHHHHHHHHHHHh----ccCHHHHH
Q psy14927          9 NGDIDRAIRMFEKAETHQQHV-----PRMLL------ENTDKLEKYIIQ---SKDPVLLKWWAQYIES----TEDMDLAM   70 (1074)
Q Consensus         9 ~g~~~eA~~~Ye~~~~~~~~~-----~~~~~------~~~~~~~~~~~~---~~~~~l~~~~a~~~e~----~~~~~~A~   70 (1074)
                      .+++++|+.+|+++-.....-     ..+|.      +++.++.++..+   ..++.-+..+|..+..    .+++++|.
T Consensus        56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~  135 (490)
T 2xm6_A           56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESV  135 (490)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred             CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence            688999999999875443111     23332      255666665555   3567777788888887    78899999


Q ss_pred             HHHHHhhCh---hhh---hhHhhc----cCCHHHHHHHHH---hcCChHHHHHHHHHHHh----cCChHHHHHHHHHhCC
Q psy14927         71 KYYEEARDY---LSM---VRVLCF----LQDFSRAAELAN---ASGDTAAAYHLARQYEN----SGQFDEAIHFYSVAGS  133 (1074)
Q Consensus        71 ~~y~~a~d~---~~~---vr~l~~----~~~~~~a~~i~~---~~~~~~~~~~la~~~~~----~g~~~~Ai~~y~~a~~  133 (1074)
                      ++|.++-+-   ...   ..+|..    .+++++|.+..+   +.++..+.+.+|..|..    .+++++|+++|.++-.
T Consensus       136 ~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~  215 (490)
T 2xm6_A          136 KWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT  215 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH
Confidence            988886443   222   233444    678888887765   45778888888988887    7888999888877522


Q ss_pred             hHHHHHHHHHhCchHHHHHHhhh-----cCchhHHHHHHHHcc----CC---hhHHHHHHHH----hCChHHHHHHHHhh
Q psy14927        134 CGNAVRLCKEQALDDQLWNLALS-----AGPSEQIEAATYLET----IE---PDKAVLLYHK----AGALHKALDLAFKL  197 (1074)
Q Consensus       134 ~~~A~~la~~~~~~~~~~~l~~~-----~~~~~~~~~A~~~e~----~~---~~~A~~ly~k----aG~~~kAl~l~~~~  197 (1074)
                      .          +.......++..     ..+.++.++-.||+.    ++   ...-+.+|..    .+++.+|++++.+.
T Consensus       216 ~----------~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a  285 (490)
T 2xm6_A          216 S----------GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKS  285 (490)
T ss_dssp             T----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHH
T ss_pred             C----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Confidence            1          212222222111     113334444445443    11   1122334444    56666666666554


Q ss_pred             ccCCcc-hHHHHHHHHHHhcC-----CChhhHHHhhhhc---chHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHccCCH
Q psy14927        198 TLSNSG-LVFQIKAMKCLLKS-----GDTNKIIFFAGVS---RMKEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKAP  268 (1074)
Q Consensus       198 ~~~~~~-~~~~~~a~k~l~~~-----~~~~~~i~~a~~~---r~~~l~~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~  268 (1074)
                      ...++. ..+.+  ..+....     +|.++++.+-..+   ...+.+..++..+...   +.+++++.++++|.++-..
T Consensus       286 ~~~~~~~a~~~L--g~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~---g~~~~~~~A~~~~~~a~~~  360 (490)
T 2xm6_A          286 AEQGNSDGQYYL--AHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRL---GSEEEHKKAVEWFRKAAAK  360 (490)
T ss_dssp             HTTTCHHHHHHH--HHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---CCHHHHHHHHHHHHHHHHT
T ss_pred             HHcCCHHHHHHH--HHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCcccHHHHHHHHHHHHHC
Confidence            321110 01111  1112222     6666665543322   2344455555555443   4567778888888776433


Q ss_pred             HHHHHHHHHHHhHHHHh----hcCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHh---hcCChHHHhhHHH
Q psy14927        269 HLLANFYVSCAQVEIDE----FGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEID---EFGNYEKGLGALN  341 (1074)
Q Consensus       269 ~~aa~~~~~~a~~ei~e----~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~~  341 (1074)
                      .. ...+...+..- ..    -+||++|...+..|...    +  .+.     ....+..+|..   ..+|+++|...|.
T Consensus       361 ~~-~~a~~~Lg~~y-~~g~g~~~~~~~A~~~~~~A~~~----~--~~~-----a~~~Lg~~y~~g~g~~~d~~~A~~~~~  427 (490)
T 2xm6_A          361 GE-KAAQFNLGNAL-LQGKGVKKDEQQAAIWMRKAAEQ----G--LSA-----AQVQLGEIYYYGLGVERDYVQAWAWFD  427 (490)
T ss_dssp             TC-HHHHHHHHHHH-HHTSSSCCCHHHHHHHHHHHHHT----T--CHH-----HHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             CC-HHHHHHHHHHH-HcCCCCCCCHHHHHHHHHHHHhC----C--CHH-----HHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            22 22333445444 33    58999999999988762    2  121     12223344444   2489999999999


Q ss_pred             HHHHHH
Q psy14927        342 EAKRCL  347 (1074)
Q Consensus       342 ~~~~~~  347 (1074)
                      ++...-
T Consensus       428 ~A~~~~  433 (490)
T 2xm6_A          428 TASTND  433 (490)
T ss_dssp             HHHHHH
T ss_pred             HHHHCC
Confidence            988763

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=98.59  E-value=1e-06  Score=111.41  Aligned_cols=177  Identities=16%  Similarity=0.108  Sum_probs=140.3

Q ss_pred             hcHHHHHH-HhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHH
Q psy14927         35 ENTDKLEK-YIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLAR  113 (1074)
Q Consensus        35 ~~~~~~~~-~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~  113 (1074)
                      +++..+.+ +++...++......+++++..|.++.|.+...   |-.....+...+|+++.|.++++...+......+|+
T Consensus       613 ~~~~~a~~~~l~~i~~~~~~~~~~~~l~~~~~~~~a~~~~~---~~~~~f~~~l~~~~~~~A~~~~~~~~~~~~W~~la~  689 (814)
T 3mkq_A          613 GEIEEAIENVLPNVEGKDSLTKIARFLEGQEYYEEALNISP---DQDQKFELALKVGQLTLARDLLTDESAEMKWRALGD  689 (814)
T ss_dssp             TCHHHHHHHTGGGCCCHHHHHHHHHHHHHTTCHHHHHHHCC---CHHHHHHHHHHHTCHHHHHHHHTTCCCHHHHHHHHH
T ss_pred             CCHHHHHHHHHhcCCchHHHHHHHHHHHhCCChHHheecCC---CcchheehhhhcCCHHHHHHHHHhhCcHhHHHHHHH
Confidence            57777777 77666624444888999999999999987663   444445557789999999999999999999999999


Q ss_pred             HHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHcc-CChhHHHHHHHHhCChHHHHH
Q psy14927        114 QYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLET-IEPDKAVLLYHKAGALHKALD  192 (1074)
Q Consensus       114 ~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~-~~~~~A~~ly~kaG~~~kAl~  192 (1074)
                      ++++.|+++.|++.|.++++|+.+..|....+..+.+.            ++|+..+. +++..|..+|.++|++.+|++
T Consensus       690 ~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~------------~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~  757 (814)
T 3mkq_A          690 ASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLV------------TLAKDAETTGKFNLAFNAYWIAGDIQGAKD  757 (814)
T ss_dssp             HHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHH------------HHHHHHHHcCchHHHHHHHHHcCCHHHHHH
Confidence            99999999999999999999999999988776555433            45555555 668889999999999999999


Q ss_pred             HHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHH--HHHHHHHHHhcC
Q psy14927        193 LAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKE--IYVMAANYLQSS  246 (1074)
Q Consensus       193 l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~--l~~~aa~yl~~~  246 (1074)
                      +|.+                    .+.+++|+.+|......+  +-.....|-+.+
T Consensus       758 ~~~~--------------------~~~~~~A~~lA~~~~~~~~~i~~~~~~~~~~L  793 (814)
T 3mkq_A          758 LLIK--------------------SQRFSEAAFLGSTYGLGDNEVNDIVTKWKENL  793 (814)
T ss_dssp             HHHH--------------------TTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHH--------------------cCChHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence            9888                    788888888888876555  545444444443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.56  E-value=1.6e-05  Score=92.41  Aligned_cols=281  Identities=14%  Similarity=0.057  Sum_probs=161.0

Q ss_pred             cCCChHHHHHHHHHHHhccCHHHHHHHHHHhhC--------hhhhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHH
Q psy14927         46 QSKDPVLLKWWAQYIESTEDMDLAMKYYEEARD--------YLSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLA  112 (1074)
Q Consensus        46 ~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d--------~~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la  112 (1074)
                      +++++..+...|..+...|++++|.++|.++-+        +..+..++..+|++++|.+..+.     +.+..+...+|
T Consensus        22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  101 (450)
T 2y4t_A           22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG  101 (450)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            355677888889999999999999999998643        24556678899999999988763     45677888999


Q ss_pred             HHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHccCChhHHHHHHHHhCChHHHHH
Q psy14927        113 RQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLETIEPDKAVLLYHKAGALHKALD  192 (1074)
Q Consensus       113 ~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~~~~~A~~ly~kaG~~~kAl~  192 (1074)
                      ..|...|++++|+++|.++-..+.-...+     .+.+.            ..+..+.......-+..|.+.|++.+|+.
T Consensus       102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~A~~  164 (450)
T 2y4t_A          102 HLLLKQGKLDEAEDDFKKVLKSNPSENEE-----KEAQS------------QLIKSDEMQRLRSQALNAFGSGDYTAAIA  164 (450)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTSCCCHHHH-----HHHHH------------HHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCChhh-----HHHHH------------HHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999987753321100000     00001            11111111111222334555555555555


Q ss_pred             HHHhhccCC-cchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHccCCHHHH
Q psy14927        193 LAFKLTLSN-SGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLL  271 (1074)
Q Consensus       193 l~~~~~~~~-~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~a  271 (1074)
                      ++.+.-..+ .....+..-..++.+.|+.++++.+...+...              ...++.....+...|...|.+++|
T Consensus       165 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~g~~~~A  230 (450)
T 2y4t_A          165 FLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL--------------KNDNTEAFYKISTLYYQLGDHELS  230 (450)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH--------------HCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------------CCCCHHHHHHHHHHHHHcCCHHHH
Confidence            554421100 01112233345667778887776655443210              012233344444445555555554


Q ss_pred             HHHHHHH--------------------------HhHHHHhhcCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q psy14927        272 ANFYVSC--------------------------AQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEV  325 (1074)
Q Consensus       272 a~~~~~~--------------------------a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  325 (1074)
                      ...+..+                          +... ...|+|++|...+..+++..    ...+ .+...+...+..+
T Consensus       231 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~A~~~~~~~l~~~----p~~~-~~~~~~~~~l~~~  304 (450)
T 2y4t_A          231 LSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEEL-IRDGRYTDATSKYESVMKTE----PSIA-EYTVRSKERICHC  304 (450)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHC----CSSH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcC----Ccch-HHHHHHHHHHHHH
Confidence            4444333                          4444 56688888888888877632    1122 1222233344667


Q ss_pred             HHhhcCChHHHhhHHHHHHHHHhhccCcchhHHHHHHHHHHHHH
Q psy14927        326 EIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKIAEV  369 (1074)
Q Consensus       326 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  369 (1074)
                      +.+ .|+++.|+..+.++-..   .|+... ++. ....++.+.
T Consensus       305 ~~~-~g~~~~A~~~~~~a~~~---~p~~~~-~~~-~l~~~~~~~  342 (450)
T 2y4t_A          305 FSK-DEKPVEAIRVCSEVLQM---EPDNVN-ALK-DRAEAYLIE  342 (450)
T ss_dssp             HHT-TTCHHHHHHHHHHHHHH---CTTCHH-HHH-HHHHHHHHT
T ss_pred             HHH-CCCHHHHHHHHHHHHHh---CcccHH-HHH-HHHHHHHHh
Confidence            777 69999999988877554   555443 222 244454433

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.55  E-value=2e-05  Score=87.85  Aligned_cols=85  Identities=16%  Similarity=0.070  Sum_probs=67.2

Q ss_pred             ChHHHHHHHHHHHhccCHHHHHHHHHHhhC--------hhhhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHHHH
Q psy14927         49 DPVLLKWWAQYIESTEDMDLAMKYYEEARD--------YLSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLARQY  115 (1074)
Q Consensus        49 ~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d--------~~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~~~  115 (1074)
                      ++..+...|..+...|++++|.++|.++-.        +..+..++..+|++++|.+..+.     +.+..+...+|..|
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~   81 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            456778888888899999999999987632        23455667888899888887662     45677888999999


Q ss_pred             HhcCChHHHHHHHHHhCC
Q psy14927        116 ENSGQFDEAIHFYSVAGS  133 (1074)
Q Consensus       116 ~~~g~~~~Ai~~y~~a~~  133 (1074)
                      ...|++++|+++|.++-.
T Consensus        82 ~~~~~~~~A~~~~~~~~~   99 (359)
T 3ieg_A           82 LKQGKLDEAEDDFKKVLK   99 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHT
T ss_pred             HHcCChHHHHHHHHHHHh
Confidence            999999999999887643

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.52  E-value=3e-07  Score=110.74  Aligned_cols=139  Identities=14%  Similarity=0.111  Sum_probs=80.2

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhcc-ccccc--------cchhhhh------hh-----------------
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAG-DKGVK--------LNLETMM------GT-----------------  836 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~-~~g~~--------~~~~~~~------~~-----------------  836 (1074)
                      ..+|||||||+||++||+.+++     +++|+.. ..|..        +....+.      ..                 
T Consensus        28 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~l~  107 (651)
T 3ces_A           28 PFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILN  107 (651)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEEES
T ss_pred             cCCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhhhh
Confidence            3469999999999999999998     6777653 12110        0000000      00                 


Q ss_pred             --hhHH---------HhhhhhhHHHHhhh-CCeEEEeeeEEEec--CCeE-EEEeCCCCeeEEEcCeEEEccCCCCC--C
Q psy14927        837 --KSAA---------VKALTGGIAHLFKS-NKVTQLNGHGKITG--PNTV-TVIKSDGSTEEVKTKNILIATGSEVT--P  899 (1074)
Q Consensus       837 --~~~~---------~~~l~~~~~~~l~~-~gV~~~~g~v~~id--~~~~-~v~~~~G~~~~i~~d~lIIATG~~p~--~  899 (1074)
                        ....         ...+...+.+.+.+ .||+++.++|+.+.  .+.+ .|.+.+|  .++.+|.||+|||+.+.  .
T Consensus       108 ~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~~~~V~~L~~e~g~V~GV~t~dG--~~I~Ad~VVLATGt~s~~~~  185 (651)
T 3ces_A          108 ASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMG--LKFRAKAVVLTVGTFLDGKI  185 (651)
T ss_dssp             TTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEESSSBEEEEEETTS--EEEEEEEEEECCSTTTCCEE
T ss_pred             cccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEEEEEEEEEEecCCEEEEEEECCC--CEEECCEEEEcCCCCccCcc
Confidence              0000         01233345666666 69999877888873  4433 5677777  68999999999999863  3


Q ss_pred             CCCCCCCCcceechhhHhcchHhhHHhhcCCcEEEEe
Q psy14927        900 FPGIEVDEETIVSSTGALSLKKGSVWGRLGAEVTAIE  936 (1074)
Q Consensus       900 ipgi~~~~~~v~t~~~~~~~~~A~~l~~~G~~Vtlv~  936 (1074)
                      ++|.......-. . +.....-+..|.++|.+|+.+.
T Consensus       186 i~G~~~~~~gri-G-g~~a~eLA~~L~~lG~~v~~~~  220 (651)
T 3ces_A          186 HIGLDNYSGGRA-G-DPPSIPLSRRLRELPLRVGRLK  220 (651)
T ss_dssp             ECC---------------CCHHHHHHHTTTCCEEEEC
T ss_pred             ccCcccCCCCCc-c-chhhhHHHHHHHhcCCeEEEec
Confidence            444321110000 0 1111111777888899988874

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.52  E-value=1.8e-05  Score=90.32  Aligned_cols=232  Identities=15%  Similarity=0.180  Sum_probs=144.5

Q ss_pred             hhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhCh-------
Q psy14927          7 MKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDY-------   79 (1074)
Q Consensus         7 ~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~-------   79 (1074)
                      ...|++++|+.+|+++-..-..++.-    .          .....+...|..+...|+++.|.++|.+|-+.       
T Consensus       114 ~~~g~~~~A~~~~~~al~~~~~~~~~----~----------~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~  179 (383)
T 3ulq_A          114 LDQREYLSAIKFFKKAESKLIFVKDR----I----------EKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY  179 (383)
T ss_dssp             HHTTCHHHHHHHHHHHHTTGGGCCCH----H----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhCCCH----H----------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence            45688888888888876442111100    0          01356778899999999999999999887553       


Q ss_pred             --------hhhhhHhhccCCHHHHHHHHHh-------cCCh----HHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHH
Q psy14927         80 --------LSMVRVLCFLQDFSRAAELANA-------SGDT----AAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRL  140 (1074)
Q Consensus        80 --------~~~vr~l~~~~~~~~a~~i~~~-------~~~~----~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~l  140 (1074)
                              ..+..++..+|++++|.+..++       .++.    .+...+|..|..+|++++|+++|.      +|+++
T Consensus       180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~------~al~~  253 (383)
T 3ulq_A          180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFK------RAIAV  253 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH------HHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHH------HHHHH
Confidence                    2233556777888777765542       2222    255678888888888888888764      45666


Q ss_pred             HHHhCc-hHHHHHHhhhcCchhHHHHHHHHcc-CChhHHHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHHhcCC
Q psy14927        141 CKEQAL-DDQLWNLALSAGPSEQIEAATYLET-IEPDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSG  218 (1074)
Q Consensus       141 a~~~~~-~~~~~~l~~~~~~~~~~~~A~~~e~-~~~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~  218 (1074)
                      ++..+. ....         ..+...|..+.. +++++|..+|.+      |++++-+                    .+
T Consensus       254 ~~~~~~~~~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~------al~~~~~--------------------~~  298 (383)
T 3ulq_A          254 FEESNILPSLP---------QAYFLITQIHYKLGKIDKAHEYHSK------GMAYSQK--------------------AG  298 (383)
T ss_dssp             HHHTTCGGGHH---------HHHHHHHHHHHHTTCHHHHHHHHHH------HHHHHHH--------------------HT
T ss_pred             HHhhccchhHH---------HHHHHHHHHHHHCCCHHHHHHHHHH------HHHHHHH--------------------cC
Confidence            665533 1111         112223332222 444444444432      2333222                    23


Q ss_pred             ChhhHHHhhhhcchHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHhHHHHhhcCHHHHHHHHHH
Q psy14927        219 DTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGALNE  298 (1074)
Q Consensus       219 ~~~~~i~~a~~~r~~~l~~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~a~~ei~e~~~y~~a~~~l~~  298 (1074)
                      +...         ... +..++......   ++++.+..++.++.+.+.....+..+...+..- ..-|+|++|...+..
T Consensus       299 ~~~~---------~~~-~~~l~~~~~~~---~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y-~~~g~~~~A~~~~~~  364 (383)
T 3ulq_A          299 DVIY---------LSE-FEFLKSLYLSG---PDEEAIQGFFDFLESKMLYADLEDFAIDVAKYY-HERKNFQKASAYFLK  364 (383)
T ss_dssp             CHHH---------HHH-HHHHHHHHTSS---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHH
T ss_pred             CHHH---------HHH-HHHHHHHHhCC---CcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHH
Confidence            2211         111 22344444333   344778889999999999999999999999998 999999999999999


Q ss_pred             HHHHHHhcC
Q psy14927        299 AKRCLLKHN  307 (1074)
Q Consensus       299 a~~~l~~~~  307 (1074)
                      +++.-.+..
T Consensus       365 al~~~~~i~  373 (383)
T 3ulq_A          365 VEQVRQLIQ  373 (383)
T ss_dssp             HHHHHTSCS
T ss_pred             HHHHHHHhh
Confidence            998776643

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=98.48  E-value=2.2e-08  Score=117.27  Aligned_cols=94  Identities=19%  Similarity=0.228  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccC--------CcccCCccCccccC
Q psy14927        950 VAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVG--------RRPYTHNLGLEEIG 1021 (1074)
Q Consensus       950 ~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G--------~~p~~~~l~l~~~g 1021 (1074)
                      +...+...+++.| +|++++.|++|+.+++++.|++.+      +.++.+|.||+|+|        +.|+.+....+..+
T Consensus       206 ~~~l~~~~~~~~g-~i~~~~~V~~i~~~~~~v~v~~~~------g~~~~ad~vi~a~~~~~l~~i~~~p~l~~~~~~~~~  278 (431)
T 3k7m_X          206 SADLVDAMSQEIP-EIRLQTVVTGIDQSGDVVNVTVKD------GHAFQAHSVIVATPMNTWRRIVFTPALPERRRSVIE  278 (431)
T ss_dssp             THHHHHHHHTTCS-CEESSCCEEEEECSSSSEEEEETT------SCCEEEEEEEECSCGGGGGGSEEESCCCHHHHHHHH
T ss_pred             HHHHHHHHHhhCC-ceEeCCEEEEEEEcCCeEEEEECC------CCEEEeCEEEEecCcchHhheeeCCCCCHHHHHHHH
Confidence            3455556667778 999999999999877777776543      34699999999999        88887753333222


Q ss_pred             cccCCCCCeeeCCCCCCCCCCEEEecccCC
Q psy14927       1022 IEKDEKGRVPVNSRFQTVIPNIFAIGDCIH 1051 (1074)
Q Consensus      1022 l~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~ 1051 (1074)
                      ... ....++|+..++|+.++||+.||+..
T Consensus       279 ~~~-~~~~~kv~~~~~~~~~~i~~~~d~~~  307 (431)
T 3k7m_X          279 EGH-GGQGLKILIHVRGAEAGIECVGDGIF  307 (431)
T ss_dssp             HCC-CCCEEEEEEEEESCCTTEEEEBSSSS
T ss_pred             hCC-CcceEEEEEEECCCCcCceEcCCCCE
Confidence            222 23348899889999999999999854

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.47  E-value=1.7e-05  Score=85.15  Aligned_cols=110  Identities=20%  Similarity=0.156  Sum_probs=86.2

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhC------
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARD------   78 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d------   78 (1074)
                      .+...|++++|+..|+++-..+                    ++++..+..+|..+...|++++|.++|.++-.      
T Consensus        12 ~~~~~~~~~~A~~~~~~~l~~~--------------------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~   71 (272)
T 3u4t_A           12 FLFKNNNYAEAIEVFNKLEAKK--------------------YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATK   71 (272)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHTT--------------------CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTT
T ss_pred             HHHHhcCHHHHHHHHHHHHHhC--------------------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchh
Confidence            4567888999999988875332                    34466788888899999999999999998755      


Q ss_pred             -----hhhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhcCChHHHHHHHHHhCCh
Q psy14927         79 -----YLSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSC  134 (1074)
Q Consensus        79 -----~~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~  134 (1074)
                           +..+..++..+|++++|.+..+     .+.+..+...+|..|...|++++|+++|.++-..
T Consensus        72 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  137 (272)
T 3u4t_A           72 AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP  137 (272)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Confidence                 3456667888899998888766     2566778889999999999999999988776554

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.46  E-value=5.5e-05  Score=86.22  Aligned_cols=228  Identities=14%  Similarity=0.161  Sum_probs=144.5

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHhhCh--------------hhhhhHhhccCCHHHHHHHHHh-------cCC-----hH
Q psy14927         53 LKWWAQYIESTEDMDLAMKYYEEARDY--------------LSMVRVLCFLQDFSRAAELANA-------SGD-----TA  106 (1074)
Q Consensus        53 ~~~~a~~~e~~~~~~~A~~~y~~a~d~--------------~~~vr~l~~~~~~~~a~~i~~~-------~~~-----~~  106 (1074)
                      +-+.|.++...|++++|..+|.+|-..              ..+..++..+|++++|.+..++       .++     ..
T Consensus       104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  183 (378)
T 3q15_A          104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ  183 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence            344588899999999999999998544              2345568889999888776653       222     22


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHcc-CChhHHHHHHHHhC
Q psy14927        107 AAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLET-IEPDKAVLLYHKAG  185 (1074)
Q Consensus       107 ~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~-~~~~~A~~ly~kaG  185 (1074)
                      +...+|..|...|++++|+++|.      +|+++++..+.......        .+..+|..+.. +++++|+.+|.+| 
T Consensus       184 ~~~~lg~~y~~~~~~~~A~~~~~------~al~~~~~~~~~~~~~~--------~~~~lg~~y~~~~~~~~A~~~~~~a-  248 (378)
T 3q15_A          184 SLFVIAGNYDDFKHYDKALPHLE------AALELAMDIQNDRFIAI--------SLLNIANSYDRSGDDQMAVEHFQKA-  248 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHH------HHHHHHHHTTCHHHHHH--------HHHHHHHHHHHHTCHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHH------HHHHHHHHcCCHHHHHH--------HHHHHHHHHHHCCCHHHHHHHHHHH-
Confidence            45589999999999999999875      56777777653332211        12234444443 6666666666544 


Q ss_pred             ChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcc-------hH---HHHHHHHHHHhcCCCCCChhHH
Q psy14927        186 ALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSR-------MK---EIYVMAANYLQSSDWKSQPELL  255 (1074)
Q Consensus       186 ~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r-------~~---~l~~~aa~yl~~~~~~~~~~~~  255 (1074)
                           ++++-+...+.. ......-..+..+.|+.++++.+...+.       ++   ..+..++.....   .++++.+
T Consensus       249 -----l~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~---~~~~~~~  319 (378)
T 3q15_A          249 -----AKVSREKVPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKE---TVDERKI  319 (378)
T ss_dssp             -----HHHHHHHCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSS---SCCHHHH
T ss_pred             -----HHHHHhhCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC---CCcHHHH
Confidence                 222221110000 0000111233455666666554443321       11   112222222222   3445778


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHhHHHHhhcCHHHHHHHHHHHHHHHHh
Q psy14927        256 KSIISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLK  305 (1074)
Q Consensus       256 ~~i~~~Y~k~~~~~~aa~~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~  305 (1074)
                      ...+.++.+.+.+......+...|..- ..-|+|++|...+..++..-.+
T Consensus       320 ~~al~~~~~~~~~~~~~~~~~~la~~y-~~~g~~~~A~~~~~~al~~~~~  368 (378)
T 3q15_A          320 HDLLSYFEKKNLHAYIEACARSAAAVF-ESSCHFEQAAAFYRKVLKAQED  368 (378)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHH
Confidence            889999999999999999999999998 9999999999999998876544

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.42  E-value=4.3e-06  Score=94.30  Aligned_cols=300  Identities=12%  Similarity=-0.036  Sum_probs=142.0

Q ss_pred             CCHHHHHHHHHHcCcccchhhhHhhhcHHHHHH-Hhhc-----CCC----hHHHHHHHHHHHhccCHHHHHHHHHHhhC-
Q psy14927         10 GDIDRAIRMFEKAETHQQHVPRMLLENTDKLEK-YIIQ-----SKD----PVLLKWWAQYIESTEDMDLAMKYYEEARD-   78 (1074)
Q Consensus        10 g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~----~~l~~~~a~~~e~~~~~~~A~~~y~~a~d-   78 (1074)
                      +.++.+...|+........ ...+++++.++.+ ...+     .++    ...+...|..+...|++++|..+|.++-. 
T Consensus        15 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~   93 (368)
T 1fch_A           15 DFWDKLQAELEEMAKRDAE-AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ   93 (368)
T ss_dssp             --------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             ccHHHHHHHHHHHHcCCch-hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            4556666666666544422 3334456655554 3332     122    34577889999999999999999998743 


Q ss_pred             -------hhhhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCc
Q psy14927         79 -------YLSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQAL  146 (1074)
Q Consensus        79 -------~~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~  146 (1074)
                             +..+.+++..+|++++|.+..+.     +.+..+...+|..|...|++++|+++|.++-      ++..... 
T Consensus        94 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~-  166 (368)
T 1fch_A           94 DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWL------RYTPAYA-  166 (368)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------HTSTTTG-
T ss_pred             CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HhCcCcH-
Confidence                   24556678899999999887763     4677888899999999999999999987642      1111100 


Q ss_pred             hHHHHHHhhhcCchhHHHHHHHHccCC-hhHHHHHHHHhCChHHHHHHHHhhcc--CCc-chHHHHHHHHHHhcCCChhh
Q psy14927        147 DDQLWNLALSAGPSEQIEAATYLETIE-PDKAVLLYHKAGALHKALDLAFKLTL--SNS-GLVFQIKAMKCLLKSGDTNK  222 (1074)
Q Consensus       147 ~~~~~~l~~~~~~~~~~~~A~~~e~~~-~~~A~~ly~kaG~~~kAl~l~~~~~~--~~~-~~~~~~~a~k~l~~~~~~~~  222 (1074)
                       ..+..+.         .......... ......+| +.|++.+|+.++.+.-.  ++. ....+..-..++.+.|+.++
T Consensus       167 -~~~~~~~---------~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~  235 (368)
T 1fch_A          167 -HLVTPAE---------EGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDK  235 (368)
T ss_dssp             -GGCC------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHH
T ss_pred             -HHHHHHH---------HHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHH
Confidence             0000000         0000000000 01122222 33444444443333210  000 01112222334445566555


Q ss_pred             HHHhhhhcchHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHccCCHHHHHHH--------------HHHHHhHHHHhhcC
Q psy14927        223 IIFFAGVSRMKEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANF--------------YVSCAQVEIDEFGN  288 (1074)
Q Consensus       223 ~i~~a~~~r~~~l~~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~--------------~~~~a~~ei~e~~~  288 (1074)
                      ++.+...+..         .     ...++.....+..+|.+.|.+++|..+              +...+... ..-|+
T Consensus       236 A~~~~~~al~---------~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~-~~~g~  300 (368)
T 1fch_A          236 AVDCFTAALS---------V-----RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC-INLGA  300 (368)
T ss_dssp             HHHHHHHHHH---------H-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHHTC
T ss_pred             HHHHHHHHHH---------h-----CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHCCC
Confidence            5444332211         0     112233334444444444444444433              33445565 67799


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCchH--HHHHHHHHHHHHHHHhhcCChHHHhhHHHHHH
Q psy14927        289 YEKGLGALNEAKRCLLKHNDSMYE--TLKSSVVEKLAEVEIDEFGNYEKGLGALNEAK  344 (1074)
Q Consensus       289 y~~a~~~l~~a~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  344 (1074)
                      |++|...+..+++...+.......  .+.......+..++.. .|+++.|..++.++-
T Consensus       301 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~l  357 (368)
T 1fch_A          301 HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSM-LGQSDAYGAADARDL  357 (368)
T ss_dssp             HHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHH-HTCGGGHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHH-hCChHhHHHhHHHHH
Confidence            999999999998876655221110  0001122234566667 699999988776543

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.40  E-value=2.9e-06  Score=101.79  Aligned_cols=102  Identities=20%  Similarity=0.161  Sum_probs=65.1

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhcc-ccccc--------cchhhhh------hh-h----------------
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAG-DKGVK--------LNLETMM------GT-K----------------  837 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~-~~g~~--------~~~~~~~------~~-~----------------  837 (1074)
                      .+|||||||+||++||+.+++     .++++.. ..|..        +....+.      .. .                
T Consensus        28 yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~l~~  107 (637)
T 2zxi_A           28 FDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKMLNT  107 (637)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEEEST
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccceeeccc
Confidence            469999999999999999999     6777653 22210        0000000      00 0                


Q ss_pred             ---hH--------HHhhhhhhHHHHhhh-CCeEEEeeeEEEec--CCeE-EEEeCCCCeeEEEcCeEEEccCCCCC
Q psy14927        838 ---SA--------AVKALTGGIAHLFKS-NKVTQLNGHGKITG--PNTV-TVIKSDGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       838 ---~~--------~~~~l~~~~~~~l~~-~gV~~~~g~v~~id--~~~~-~v~~~~G~~~~i~~d~lIIATG~~p~  898 (1074)
                         ..        ....+...+.+.+.+ .||+++.++|+.+.  .+.+ .|.+.+|  .++.+|.||+|||+.+.
T Consensus       108 ~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~~~~Vt~L~~e~g~V~GV~t~dG--~~i~AdaVVLATG~~s~  181 (637)
T 2zxi_A          108 RKGKAVQSPRAQADKKRYREYMKKVCENQENLYIKQEEVVDIIVKNNQVVGVRTNLG--VEYKTKAVVVTTGTFLN  181 (637)
T ss_dssp             TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEESCEEEEEESSSBEEEEEETTS--CEEECSEEEECCTTCBT
T ss_pred             ccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEEEeEEEEEEecCCEEEEEEECCC--cEEEeCEEEEccCCCcc
Confidence               00        001233445666666 59999877888764  3443 4777787  68999999999999863

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.39  E-value=3.8e-05  Score=85.08  Aligned_cols=227  Identities=12%  Similarity=0.126  Sum_probs=132.0

Q ss_pred             hccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHH
Q psy14927         62 STEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLC  141 (1074)
Q Consensus        62 ~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la  141 (1074)
                      ++|++++|.+++.++...... .++...++++.|.....         ..+..|..+|++++|+++|.+      |+++.
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~-~~~~~~~~~~~A~~~~~---------~a~~~~~~~g~~~~A~~~~~~------al~~~   66 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKT-SFMKWKPDYDSAASEYA---------KAAVAFKNAKQLEQAKDAYLQ------EAEAH   66 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCC-CSSSCSCCHHHHHHHHH---------HHHHHHHHTTCHHHHHHHHHH------HHHHH
T ss_pred             ccchHHHHHHHHHHHHHHccc-cccCCCCCHHHHHHHHH---------HHHHHHHHcCCHHHHHHHHHH------HHHHH
Confidence            567788888888877654331 12222467777766643         346778888999999888764      45555


Q ss_pred             HHhCchHHHHHHhhhcCchhHHHHHHHHccCChhHHHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChh
Q psy14927        142 KEQALDDQLWNLALSAGPSEQIEAATYLETIEPDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTN  221 (1074)
Q Consensus       142 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~~~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~  221 (1074)
                      .+.+.......        .+            ..++.+|.+.|++.+|+..+.+             |++...+.|+..
T Consensus        67 ~~~~~~~~~a~--------~~------------~~lg~~~~~~g~~~~A~~~~~~-------------Al~l~~~~g~~~  113 (307)
T 2ifu_A           67 ANNRSLFHAAK--------AF------------EQAGMMLKDLQRMPEAVQYIEK-------------ASVMYVENGTPD  113 (307)
T ss_dssp             HHTTCHHHHHH--------HH------------HHHHHHHHHTTCGGGGHHHHHH-------------HHHHHHTTTCHH
T ss_pred             HHcCCHHHHHH--------HH------------HHHHHHHHhCCCHHHHHHHHHH-------------HHHHHHHcCCHH
Confidence            55433222111        11            2334444445555555554444             223222344432


Q ss_pred             hHHHhhhhcchHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHhHHHHhhcCHHHHHHHHHHHHH
Q psy14927        222 KIIFFAGVSRMKEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKR  301 (1074)
Q Consensus       222 ~~i~~a~~~r~~~l~~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~a~~ei~e~~~y~~a~~~l~~a~~  301 (1074)
                      .         ....+..++..+...+++.--..+++++.++...+....++..+..++..- ...|+|++|...+..+++
T Consensus       114 ~---------~a~~~~~lg~~~~~g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~  183 (307)
T 2ifu_A          114 T---------AAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLL-VRQQKFDEAAASLQKEKS  183 (307)
T ss_dssp             H---------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHH
T ss_pred             H---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHH
Confidence            1         112333444444321111112344555666666666667778888888887 889999999999999999


Q ss_pred             HHHhcCCCchHHHHHHHHHHHHHHHHhhcCChHHHhhHHHHHHHHHhhccC
Q psy14927        302 CLLKHNDSMYETLKSSVVEKLAEVEIDEFGNYEKGLGALNEAKRCLLKHND  352 (1074)
Q Consensus       302 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  352 (1074)
                      ...+.+.. + . .....+....++.. .|+++.|+..|.++. ....|+.
T Consensus       184 ~~~~~~~~-~-~-~~~~~~~~g~~~~~-~g~~~~A~~~~~~al-~~p~~~~  229 (307)
T 2ifu_A          184 MYKEMENY-P-T-CYKKCIAQVLVQLH-RADYVAAQKCVRESY-SIPGFSG  229 (307)
T ss_dssp             HHHHTTCH-H-H-HHHHHHHHHHHHHH-TTCHHHHHHHHHHHT-TSTTSTT
T ss_pred             HHHHcCCh-h-H-HHHHHHHHHHHHHH-cCCHHHHHHHHHHHh-CCCCCCC
Confidence            88876641 1 1 11122234555666 699999999999887 5444443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.38  E-value=4.3e-05  Score=90.87  Aligned_cols=80  Identities=23%  Similarity=0.304  Sum_probs=56.4

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHhhC--------hhhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHH
Q psy14927         50 PVLLKWWAQYIESTEDMDLAMKYYEEARD--------YLSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYE  116 (1074)
Q Consensus        50 ~~l~~~~a~~~e~~~~~~~A~~~y~~a~d--------~~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~  116 (1074)
                      ...+...|..+...|++++|.++|.++=.        +..+..++..+|++++|.+..+     .+.+..+.+.+|..+.
T Consensus        25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  104 (537)
T 3fp2_A           25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE  104 (537)
T ss_dssp             HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence            44566667777778888888888877532        2345556777788887777665     2456677788888888


Q ss_pred             hcCChHHHHHHHH
Q psy14927        117 NSGQFDEAIHFYS  129 (1074)
Q Consensus       117 ~~g~~~~Ai~~y~  129 (1074)
                      ..|++++|++.|.
T Consensus       105 ~~g~~~~A~~~~~  117 (537)
T 3fp2_A          105 SLGNFTDAMFDLS  117 (537)
T ss_dssp             HHTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHH
Confidence            8888888888774

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.37  E-value=2.4e-05  Score=92.35  Aligned_cols=81  Identities=22%  Similarity=0.270  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHhhC-------hhhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhc
Q psy14927         51 VLLKWWAQYIESTEDMDLAMKYYEEARD-------YLSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENS  118 (1074)
Q Consensus        51 ~l~~~~a~~~e~~~~~~~A~~~y~~a~d-------~~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~  118 (1074)
                      ..+...|..+...|+|++|.++|.++-.       +..+..++..+|++++|.+..+     .+.+..+.+.+|..|...
T Consensus         7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   86 (514)
T 2gw1_A            7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGL   86 (514)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence            4556667777777777777777777643       3445556777777777777655     345667788888888888


Q ss_pred             CChHHHHHHHHHh
Q psy14927        119 GQFDEAIHFYSVA  131 (1074)
Q Consensus       119 g~~~~Ai~~y~~a  131 (1074)
                      |++++|++.|.++
T Consensus        87 g~~~~A~~~~~~~   99 (514)
T 2gw1_A           87 GKFADAMFDLSVL   99 (514)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHH
Confidence            8888888888765

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.36  E-value=8.5e-05  Score=84.70  Aligned_cols=236  Identities=10%  Similarity=0.095  Sum_probs=126.0

Q ss_pred             HHHHHHhccCHHHHHHHHHHhhCh--------------hhhhhHhhccCCHHHHHHHHHh-------cCC-----hHHHH
Q psy14927         56 WAQYIESTEDMDLAMKYYEEARDY--------------LSMVRVLCFLQDFSRAAELANA-------SGD-----TAAAY  109 (1074)
Q Consensus        56 ~a~~~e~~~~~~~A~~~y~~a~d~--------------~~~vr~l~~~~~~~~a~~i~~~-------~~~-----~~~~~  109 (1074)
                      .|.++...|++++|.++|.+|-..              ..+..++..+|++++|.+..++       .++     ..+..
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            588889999999999999998543              3345557778888888776553       222     13566


Q ss_pred             HHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHcc-CChhHHHHHHHHhCChH
Q psy14927        110 HLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLET-IEPDKAVLLYHKAGALH  188 (1074)
Q Consensus       110 ~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~-~~~~~A~~ly~kaG~~~  188 (1074)
                      .+|..|...|++++|+++|.      +|++++++.+.......        .+...|..+.. +++++|..+|.+     
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~------~al~~~~~~~~~~~~~~--------~~~~lg~~y~~~g~~~~A~~~~~~-----  249 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQ------KAYSMAEAEKQPQLMGR--------TLYNIGLCKNSQSQYEDAIPYFKR-----  249 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHH------HHHHHHHHTTCHHHHHH--------HHHHHHHHHHHTTCHHHHHHHHHH-----
T ss_pred             HHHHHHHHhcCHHHHHHHHH------HHHHHHHHcCChHHHHH--------HHHHHHHHHHHCCCHHHHHHHHHH-----
Confidence            88899999999999998864      56777766642221111        12223333333 445555554432     


Q ss_pred             HHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcC-CCCCChhHHHHHHHHHHccCC
Q psy14927        189 KALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSS-DWKSQPELLKSIISFYSKGKA  267 (1074)
Q Consensus       189 kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~-~~~~~~~~~~~i~~~Y~k~~~  267 (1074)
                       |++++.+                    .++.         ......+...|..+..+ +++.--..++.++....+.+.
T Consensus       250 -al~~~~~--------------------~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  299 (383)
T 3ulq_A          250 -AIAVFEE--------------------SNIL---------PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGD  299 (383)
T ss_dssp             -HHHHHHH--------------------TTCG---------GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             -HHHHHHh--------------------hccc---------hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC
Confidence             2232222                    1210         00111222222222222 000011111122222222222


Q ss_pred             HHHHHHHHHHHHhHHHHhhcCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhcCChHHHhhHHHHHHHHH
Q psy14927        268 PHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGNYEKGLGALNEAKRCL  347 (1074)
Q Consensus       268 ~~~aa~~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  347 (1074)
                      ...... +...+..- ...|++    ..+.+|+..+.+.+...  .. ......+..+|.+ .|++++|...+.++-...
T Consensus       300 ~~~~~~-~~~l~~~~-~~~~~~----~~~~~al~~~~~~~~~~--~~-~~~~~~la~~y~~-~g~~~~A~~~~~~al~~~  369 (383)
T 3ulq_A          300 VIYLSE-FEFLKSLY-LSGPDE----EAIQGFFDFLESKMLYA--DL-EDFAIDVAKYYHE-RKNFQKASAYFLKVEQVR  369 (383)
T ss_dssp             HHHHHH-HHHHHHHH-TSSCCH----HHHHHHHHHHHHTTCHH--HH-HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHH-hCCCcH----HHHHHHHHHHHHCcCHH--HH-HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence            222222 22344444 455665    55667777777764322  11 2233356777888 799999999999887765


Q ss_pred             hhc
Q psy14927        348 LKH  350 (1074)
Q Consensus       348 ~~~  350 (1074)
                      ++.
T Consensus       370 ~~i  372 (383)
T 3ulq_A          370 QLI  372 (383)
T ss_dssp             TSC
T ss_pred             HHh
Confidence            443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.34  E-value=0.00014  Score=82.61  Aligned_cols=248  Identities=15%  Similarity=0.130  Sum_probs=152.5

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHhhCh------------hhhhhHhhccCCHHHHHHHHHh-------cCC----hHH
Q psy14927         51 VLLKWWAQYIESTEDMDLAMKYYEEARDY------------LSMVRVLCFLQDFSRAAELANA-------SGD----TAA  107 (1074)
Q Consensus        51 ~l~~~~a~~~e~~~~~~~A~~~y~~a~d~------------~~~vr~l~~~~~~~~a~~i~~~-------~~~----~~~  107 (1074)
                      ..+...|..+...|++++|..+|.++-+.            ..+..++...|++++|.+..++       .++    ..+
T Consensus        10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   89 (406)
T 3sf4_A           10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA   89 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence            34567799999999999999999886433            2345567789999988886542       232    235


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHcc-CC-------------
Q psy14927        108 AYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLET-IE-------------  173 (1074)
Q Consensus       108 ~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~-~~-------------  173 (1074)
                      ...+|..|...|++++|+++|.      +|++++...+......        ..+...|..+.. ++             
T Consensus        90 ~~~la~~~~~~g~~~~A~~~~~------~al~~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~~~~~~~~~~~  155 (406)
T 3sf4_A           90 SGNLGNTLKVLGNFDEAIVCCQ------RHLDISRELNDKVGEA--------RALYNLGNVYHAKGKSFGCPGPQDVGEF  155 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHH------HHHHHHHHHTCHHHHH--------HHHHHHHHHHHHHHHTCC-------CCC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHH------HHHHHHHhcccccchH--------HHHHHHHHHHHHcCCcccccccchhhhh
Confidence            6688999999999999999865      4566666553221111        112223333322 33             


Q ss_pred             -------hhHHHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcC
Q psy14927        174 -------PDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSS  246 (1074)
Q Consensus       174 -------~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~  246 (1074)
                             +++|..+|.      +|++++.+                    .++...         ...++...+..+...
T Consensus       156 ~~~a~~~~~~A~~~~~------~al~~~~~--------------------~~~~~~---------~~~~~~~la~~~~~~  200 (406)
T 3sf4_A          156 PEEVRDALQAAVDFYE------ENLSLVTA--------------------LGDRAA---------QGRAFGNLGNTHYLL  200 (406)
T ss_dssp             CHHHHHHHHHHHHHHH------HHHHHHHH--------------------TTCHHH---------HHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHH------HHHHHHHh--------------------ccCcHH---------HHHHHHHHHHHHHHc
Confidence                   444444442      23333332                    222211         111222223222221


Q ss_pred             -CCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHhHHHHhhcCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q psy14927        247 -DWKSQPELLKSIISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEV  325 (1074)
Q Consensus       247 -~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  325 (1074)
                       +++.--..++.+++.+.+.+.....+..+...+... ...|+|++|...+.+++....+.+...   ........+..+
T Consensus       201 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~la~~  276 (406)
T 3sf4_A          201 GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAY-IFLGEFETASEYYKKTLLLARQLKDRA---VEAQSCYSLGNT  276 (406)
T ss_dssp             TBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHhCcCch---HHHHHHHHHHHH
Confidence             112222444455555555555566667777888887 789999999999999999888765421   122233345677


Q ss_pred             HHhhcCChHHHhhHHHHHHHHHhhccC
Q psy14927        326 EIDEFGNYEKGLGALNEAKRCLLKHND  352 (1074)
Q Consensus       326 ~~~~~~~~~~a~~~~~~~~~~~~~~~~  352 (1074)
                      +.. .|+++.|...|.++-....+.++
T Consensus       277 ~~~-~g~~~~A~~~~~~a~~~~~~~~~  302 (406)
T 3sf4_A          277 YTL-LQDYEKAIDYHLKHLAIAQELND  302 (406)
T ss_dssp             HHH-TTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHH-hCcHHHHHHHHHHHHHHHHhcCC
Confidence            778 79999999999999888777654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.34  E-value=1e-05  Score=89.25  Aligned_cols=127  Identities=14%  Similarity=0.133  Sum_probs=89.7

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccchhh-------hHh--hhcHHHHHHHhhc-----CCChHHHHHHHHHHHhcc-CHHHH
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQHVP-------RML--LENTDKLEKYIIQ-----SKDPVLLKWWAQYIESTE-DMDLA   69 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~~~~-------~~~--~~~~~~~~~~~~~-----~~~~~l~~~~a~~~e~~~-~~~~A   69 (1074)
                      .+...|++++|+.+|+++-..+..-+       ..+  .+++.++..+..+     ++++..|..+|..+...| ++++|
T Consensus        31 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A  110 (330)
T 3hym_B           31 RHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHA  110 (330)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHH
Confidence            45667999999999998754432222       111  2456655555444     467888888899998988 89999


Q ss_pred             HHHHHHhhC--------hhhhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927         70 MKYYEEARD--------YLSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus        70 ~~~y~~a~d--------~~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                      .++|.++-.        +..+..++...|++++|.+..+.     +.+......+|..|...|++++|+++|.++
T Consensus       111 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  185 (330)
T 3hym_B          111 RRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQA  185 (330)
T ss_dssp             HHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            999888644        24456667788888888877652     345667777888888888888888877654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.33  E-value=0.00017  Score=78.97  Aligned_cols=247  Identities=15%  Similarity=0.123  Sum_probs=149.6

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHhhCh------------hhhhhHhhccCCHHHHHHHHHh-------cCC----hHHH
Q psy14927         52 LLKWWAQYIESTEDMDLAMKYYEEARDY------------LSMVRVLCFLQDFSRAAELANA-------SGD----TAAA  108 (1074)
Q Consensus        52 l~~~~a~~~e~~~~~~~A~~~y~~a~d~------------~~~vr~l~~~~~~~~a~~i~~~-------~~~----~~~~  108 (1074)
                      -+...|..+...|++++|.++|.++-..            ..+..++...|++++|.+..+.       .++    ..+.
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   86 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS   86 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence            3455689999999999999999986432            2445567789999998887553       222    2356


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHcc-CC--------------
Q psy14927        109 YHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLET-IE--------------  173 (1074)
Q Consensus       109 ~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~-~~--------------  173 (1074)
                      ..+|..|...|++++|+++|.+      |++++...+......        ..+...|..+.. ++              
T Consensus        87 ~~l~~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  152 (338)
T 3ro2_A           87 GNLGNTLKVLGNFDEAIVCCQR------HLDISRELNDKVGEA--------RALYNLGNVYHAKGKSFGCPGPQDTGEFP  152 (338)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHH------HHHHHHHTTCHHHHH--------HHHHHHHHHHHHHHHTSSSSSCC----CC
T ss_pred             HHHHHHHHHccCHHHHHHHHHH------HHHHHHHhcCchHHH--------HHHHHHHHHHHHcCcccccchhhhhhhhh
Confidence            6889999999999999998754      566666553322111        111223333322 33              


Q ss_pred             ------hhHHHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcC-
Q psy14927        174 ------PDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSS-  246 (1074)
Q Consensus       174 ------~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~-  246 (1074)
                            +++|..+|.      +|++++-+                    .++..         ....++...+..+... 
T Consensus       153 ~~a~~~~~~A~~~~~------~a~~~~~~--------------------~~~~~---------~~~~~~~~l~~~~~~~~  197 (338)
T 3ro2_A          153 EDVRNALQAAVDLYE------ENLSLVTA--------------------LGDRA---------AQGRAFGNLGNTHYLLG  197 (338)
T ss_dssp             HHHHHHHHHHHHHHH------HHHHHHHH--------------------HTCHH---------HHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHH------HHHHHHHh--------------------cCCHH---------HHHHHHHHHHHHHHHhC
Confidence                  344444432      23333322                    11111         0111222223222221 


Q ss_pred             CCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHhHHHHhhcCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Q psy14927        247 DWKSQPELLKSIISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVE  326 (1074)
Q Consensus       247 ~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~  326 (1074)
                      +++.--..++.+++.+...+.....+..+...+... ...|+|+.|...+.+++....+.+...   ........+..++
T Consensus       198 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~la~~~  273 (338)
T 3ro2_A          198 NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAY-IFLGEFETASEYYKKTLLLARQLKDRA---VEAQSCYSLGNTY  273 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHhhcchh---HHHHHHHHHHHHH
Confidence            122222444445555555555566666777778887 788999999999999999888765421   1222333456777


Q ss_pred             HhhcCChHHHhhHHHHHHHHHhhccC
Q psy14927        327 IDEFGNYEKGLGALNEAKRCLLKHND  352 (1074)
Q Consensus       327 ~~~~~~~~~a~~~~~~~~~~~~~~~~  352 (1074)
                      .. .|+++.|...|.++-....+.++
T Consensus       274 ~~-~g~~~~A~~~~~~a~~~~~~~~~  298 (338)
T 3ro2_A          274 TL-LQDYEKAIDYHLKHLAIAQELKD  298 (338)
T ss_dssp             HH-TTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HH-hcCHHHHHHHHHHHHHHHHhcCC
Confidence            78 79999999999998887666654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.32  E-value=7.6e-05  Score=85.50  Aligned_cols=247  Identities=12%  Similarity=0.094  Sum_probs=149.6

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHhhCh------------hhhhhHhhccCCHHHHHHHHHh-------cCC----hHHH
Q psy14927         52 LLKWWAQYIESTEDMDLAMKYYEEARDY------------LSMVRVLCFLQDFSRAAELANA-------SGD----TAAA  108 (1074)
Q Consensus        52 l~~~~a~~~e~~~~~~~A~~~y~~a~d~------------~~~vr~l~~~~~~~~a~~i~~~-------~~~----~~~~  108 (1074)
                      .+...|..+...|++++|.++|.++-+.            ..+..++..+|++++|.+..++       .++    ..+.
T Consensus        50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  129 (411)
T 4a1s_A           50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS  129 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence            3445689999999999999999986432            3445567788999998887552       222    2356


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHcc-CC--------------
Q psy14927        109 YHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLET-IE--------------  173 (1074)
Q Consensus       109 ~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~-~~--------------  173 (1074)
                      ..+|..|...|++++|+++|.+      |++++++.+......        ..+...|..+.. ++              
T Consensus       130 ~~l~~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~~~~~~~~~~~a  195 (411)
T 4a1s_A          130 GNLGNTLKVMGRFDEAAICCER------HLTLARQLGDRLSEG--------RALYNLGNVYHAKGKHLGQRNPGKFGDDV  195 (411)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHH------HHHHHHHHTCHHHHH--------HHHHHHHHHHHHHHHHHHHHSTTCCCHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHH------HHHHHHHhhchHHHH--------HHHHHHHHHHHHcCcccccccchhhhhhh
Confidence            6889999999999999998764      566666554222111        111223333322 34              


Q ss_pred             ---hhHHHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcC-CCC
Q psy14927        174 ---PDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSS-DWK  249 (1074)
Q Consensus       174 ---~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~-~~~  249 (1074)
                         +++|..+|.      +|++++.+                    .++.         ......+...+..+... +++
T Consensus       196 ~~~~~~A~~~~~------~al~~~~~--------------------~~~~---------~~~~~~~~~la~~~~~~g~~~  240 (411)
T 4a1s_A          196 KEALTRAVEFYQ------ENLKLMRD--------------------LGDR---------GAQGRACGNLGNTYYLLGDFQ  240 (411)
T ss_dssp             HHHHHHHHHHHH------HHHHHHHH--------------------HTCH---------HHHHHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHHHHHH------HHHHHHHH--------------------cCCH---------HHHHHHHHHHHHHHHHcCChH
Confidence               444444433      23333322                    1111         01111223333333222 112


Q ss_pred             CChhHHHHHHHHHHccCCHHHHHHHHHHHHhHHHHhhcCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhh
Q psy14927        250 SQPELLKSIISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDE  329 (1074)
Q Consensus       250 ~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (1074)
                      .--..++.+++.+...+.....+..+...+... ...|+|++|...+.+++....+.+...   ........+..++.. 
T Consensus       241 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~la~~~~~-  315 (411)
T 4a1s_A          241 AAIEHHQERLRIAREFGDRAAERRANSNLGNSH-IFLGQFEDAAEHYKRTLALAVELGERE---VEAQSCYSLGNTYTL-  315 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTTTCHHHHHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH-HHCcCHHHHHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHHHH-
Confidence            222333444444544455555566777778877 788999999999999999888764322   122233345677778 


Q ss_pred             cCChHHHhhHHHHHHHHHhhccC
Q psy14927        330 FGNYEKGLGALNEAKRCLLKHND  352 (1074)
Q Consensus       330 ~~~~~~a~~~~~~~~~~~~~~~~  352 (1074)
                      .|+++.|...|.++-....+.++
T Consensus       316 ~g~~~~A~~~~~~al~~~~~~~~  338 (411)
T 4a1s_A          316 LHEFNTAIEYHNRHLAIAQELGD  338 (411)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             cCCHHHHHHHHHHHHHHHHHCCC
Confidence            79999999999999888777654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=98.31  E-value=2.2e-05  Score=88.57  Aligned_cols=66  Identities=11%  Similarity=-0.049  Sum_probs=36.5

Q ss_pred             HHHHHhHHHHhhcCHHHHHHHHHHHHHHHHhcCCCchHH---HHHHHHHHHHHHHHhhcCChHHHhhHHHH
Q psy14927        275 YVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYET---LKSSVVEKLAEVEIDEFGNYEKGLGALNE  342 (1074)
Q Consensus       275 ~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  342 (1074)
                      +...+... ...|+|++|...+..|++.-.+.....+..   +...+-..+...+.. +|.++.+.+++.+
T Consensus       284 ~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~  352 (365)
T 4eqf_A          284 RYNLGISC-INLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSL-MDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHHHH-HHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHH-HTCHHHHHHHHTT
T ss_pred             HHHHHHHH-HHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHH-cCcHHHHHHHHHh
Confidence            33445555 667889999999999888777654422111   111222234455555 6888776665444

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.30  E-value=4.2e-05  Score=84.28  Aligned_cols=86  Identities=13%  Similarity=0.073  Sum_probs=69.3

Q ss_pred             CCChHHHHHHHHHHHhccCHHHHHHHHHHhhCh--------hhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHH
Q psy14927         47 SKDPVLLKWWAQYIESTEDMDLAMKYYEEARDY--------LSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLAR  113 (1074)
Q Consensus        47 ~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~--------~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~  113 (1074)
                      .+++.++...|+.+...|++++|.++|.++-..        ...+.++..+|++++|..+.+     .+.+..+.+.+|.
T Consensus        19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~   98 (330)
T 3hym_B           19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC   98 (330)
T ss_dssp             -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence            456778889999999999999999999985221        235566889999999998766     3467788999999


Q ss_pred             HHHhcC-ChHHHHHHHHHhC
Q psy14927        114 QYENSG-QFDEAIHFYSVAG  132 (1074)
Q Consensus       114 ~~~~~g-~~~~Ai~~y~~a~  132 (1074)
                      .+...| ++++|+++|.++-
T Consensus        99 ~~~~~~~~~~~A~~~~~~a~  118 (330)
T 3hym_B           99 YYLMVGHKNEHARRYLSKAT  118 (330)
T ss_dssp             HHHHSCSCHHHHHHHHHHHH
T ss_pred             HHHHhhhhHHHHHHHHHHHH
Confidence            999999 9999999887653

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.30  E-value=0.0001  Score=87.23  Aligned_cols=16  Identities=6%  Similarity=-0.058  Sum_probs=12.8

Q ss_pred             CChHHHhhHHHHHHHH
Q psy14927        331 GNYEKGLGALNEAKRC  346 (1074)
Q Consensus       331 ~~~~~a~~~~~~~~~~  346 (1074)
                      +|+++|+..|.+++..
T Consensus       381 ~~~~~A~~~~~~A~~~  396 (490)
T 2xm6_A          381 KDEQQAAIWMRKAAEQ  396 (490)
T ss_dssp             CCHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHhC
Confidence            7888888888888763

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.24  E-value=1.1e-05  Score=84.53  Aligned_cols=22  Identities=27%  Similarity=0.431  Sum_probs=17.8

Q ss_pred             HhhhcCCHHHHHHHHHHcCccc
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQ   26 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~   26 (1074)
                      .+.+.|++++|+..|+++-..+
T Consensus        14 ~~~~~g~~~~A~~~~~~al~~~   35 (217)
T 2pl2_A           14 QLYALGRYDAALTLFERALKEN   35 (217)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTS
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC
Confidence            3567899999999999887554

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.20  E-value=4.5e-05  Score=81.71  Aligned_cols=248  Identities=15%  Similarity=0.069  Sum_probs=137.1

Q ss_pred             hcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhc--CCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhH
Q psy14927          8 KNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQ--SKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRV   85 (1074)
Q Consensus         8 ~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~   85 (1074)
                      ..|++++|+.+|+++-..-              .+....  ......+..+|..+...|++++|.++|.++-+....   
T Consensus        13 ~~~~~~~A~~~~~~al~~~--------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---   75 (283)
T 3edt_B           13 GLVPRGSAVPLCKQALEDL--------------EKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREK---   75 (283)
T ss_dssp             CCSCSSSHHHHHHHHHHHH--------------HHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---
T ss_pred             CCCCHHHHHHHHHHHHHHH--------------HHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH---
Confidence            4678888888888877322              111111  122557788899999999999999999776433110   


Q ss_pred             hhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHHHH
Q psy14927         86 LCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEA  165 (1074)
Q Consensus        86 l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~  165 (1074)
                      ....+++          ....+...+|..|...|++++|+++|.+      |++++++.+-.+.-      .....+...
T Consensus        76 ~~~~~~~----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~------~~~~~~~~l  133 (283)
T 3edt_B           76 TLGKDHP----------AVAATLNNLAVLYGKRGKYKEAEPLCKR------ALEIREKVLGKFHP------DVAKQLNNL  133 (283)
T ss_dssp             HTCTTCH----------HHHHHHHHHHHHHHTTTCHHHHHHHHHH------HHHHHHHHHCTTCH------HHHHHHHHH
T ss_pred             HcCCcch----------HHHHHHHHHHHHHHHhccHHHHHHHHHH------HHHHHHHHcCCCCh------HHHHHHHHH
Confidence            0001111          1234677899999999999999999865      55555544110000      001223345


Q ss_pred             HHHHcc-CChhHHHHHHHHhCChHHHHHHHHhhccCCcc--hHHHHHHHHHHhcCCChhhHHHhhhhcch----------
Q psy14927        166 ATYLET-IEPDKAVLLYHKAGALHKALDLAFKLTLSNSG--LVFQIKAMKCLLKSGDTNKIIFFAGVSRM----------  232 (1074)
Q Consensus       166 A~~~e~-~~~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~--~~~~~~a~k~l~~~~~~~~~i~~a~~~r~----------  232 (1074)
                      |..+.. +++++|..+|.++      ++++.+....+..  ...+..-..++.+.|+.++++.+...+..          
T Consensus       134 a~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~  207 (283)
T 3edt_B          134 ALLCQNQGKAEEVEYYYRRA------LEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSV  207 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHH------HHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred             HHHHHHcCCHHHHHHHHHHH------HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence            555544 6677777776543      3333222111110  00112223445666777776665554433          


Q ss_pred             ----HHHHHHHHHHHhcCCCCCChhHHHHHHHHHHccCC-HHHHHHHHHHHHhHHHHhhcCHHHHHHHHHHHHH
Q psy14927        233 ----KEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKA-PHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKR  301 (1074)
Q Consensus       233 ----~~l~~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~-~~~aa~~~~~~a~~ei~e~~~y~~a~~~l~~a~~  301 (1074)
                          ..+|..++.+............+..+..++..... ....+..+...+... ...|+|++|...+..+++
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          208 NGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALY-RRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             CSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHT
T ss_pred             chhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHH
Confidence                12444555555555555555666666666666653 355566777778887 788999999999888765

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=98.19  E-value=8.4e-07  Score=90.26  Aligned_cols=97  Identities=15%  Similarity=0.111  Sum_probs=68.1

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhccccccc-c---chhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEE
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVK-L---NLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKI  866 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~-~---~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~  866 (1074)
                      +|+||||||+|+++|..|++     +++++.+..... .   .++.++..  .....+...+.+.+++.||+++.++|+.
T Consensus         3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~gv~v~~~~v~~   80 (180)
T 2ywl_A            3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDE--PSGEELLRRLEAHARRYGAEVRPGVVKG   80 (180)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTC--CCHHHHHHHHHHHHHHTTCEEEECCCCE
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCC--CCHHHHHHHHHHHHHHcCCEEEeCEEEE
Confidence            48999999999999999998     677765522111 0   00111000  0113455667778888999999997777


Q ss_pred             ecC--CeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        867 TGP--NTVTVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       867 id~--~~~~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                      ++.  +.+.+.+++|   ++.+|.||+|||..|
T Consensus        81 i~~~~~~~~v~~~~g---~i~ad~vI~A~G~~~  110 (180)
T 2ywl_A           81 VRDMGGVFEVETEEG---VEKAERLLLCTHKDP  110 (180)
T ss_dssp             EEECSSSEEEECSSC---EEEEEEEEECCTTCC
T ss_pred             EEEcCCEEEEEECCC---EEEECEEEECCCCCC
Confidence            653  4567777776   799999999999997

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.17  E-value=2.5e-05  Score=85.98  Aligned_cols=127  Identities=14%  Similarity=0.054  Sum_probs=92.3

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccchhhhH-------h--hhcHHHHHHHhhc-----CCChHHHHHHHHHHHhccCHHHHH
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQHVPRM-------L--LENTDKLEKYIIQ-----SKDPVLLKWWAQYIESTEDMDLAM   70 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~~~~~~-------~--~~~~~~~~~~~~~-----~~~~~l~~~~a~~~e~~~~~~~A~   70 (1074)
                      .+...|++++|+.+|+++-..+..-+..       +  .+++..+..+..+     ++++..+..+|..+...|++++|.
T Consensus        30 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~  109 (327)
T 3cv0_A           30 SMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAAL  109 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence            3567899999999999986543322222       2  2466666555554     567888999999999999999999


Q ss_pred             HHHHHhhChhh-----h-----------------hh-HhhccCCHHHHHHHHHh-----cCChHHHHHHHHHHHhcCChH
Q psy14927         71 KYYEEARDYLS-----M-----------------VR-VLCFLQDFSRAAELANA-----SGDTAAAYHLARQYENSGQFD  122 (1074)
Q Consensus        71 ~~y~~a~d~~~-----~-----------------vr-~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~~~~~~g~~~  122 (1074)
                      ++|.++-....     .                 .. ++...|++++|.+..++     +.+......+|..|...|+++
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  189 (327)
T 3cv0_A          110 ASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYD  189 (327)
T ss_dssp             HHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHH
Confidence            99988643211     0                 22 47778888998887663     456778889999999999999


Q ss_pred             HHHHHHHHh
Q psy14927        123 EAIHFYSVA  131 (1074)
Q Consensus       123 ~Ai~~y~~a  131 (1074)
                      +|+++|.++
T Consensus       190 ~A~~~~~~~  198 (327)
T 3cv0_A          190 SAAANLRRA  198 (327)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999887653

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.16  E-value=1.6e-05  Score=80.21  Aligned_cols=105  Identities=18%  Similarity=0.183  Sum_probs=81.5

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhCh------
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDY------   79 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~------   79 (1074)
                      ..++|++++|+..|+++-..+                    ++++..+..+|..+...|++++|.++|..+-..      
T Consensus        15 ~~~~g~~~~A~~~~~~al~~~--------------------p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~   74 (184)
T 3vtx_A           15 KRTKGDFDGAIRAYKKVLKAD--------------------PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAE   74 (184)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHC--------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC--------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHH
Confidence            467899999999999886433                    455778888888888889999998888886332      


Q ss_pred             --hhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhcCChHHHHHHHHH
Q psy14927         80 --LSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQFDEAIHFYSV  130 (1074)
Q Consensus        80 --~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~  130 (1074)
                        .....++...++++.|.+...     .+.+..+...+|..|.+.|++++|++.|.+
T Consensus        75 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  132 (184)
T 3vtx_A           75 AYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEK  132 (184)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHH
Confidence              234455777888888877655     356778888999999999999999998765

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.10  E-value=2.5e-05  Score=82.68  Aligned_cols=126  Identities=14%  Similarity=0.163  Sum_probs=98.2

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccchhhhHh---------hhcHHHHHHHhhc-----CCC-------hHHHHHHHHHHHhc
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQHVPRML---------LENTDKLEKYIIQ-----SKD-------PVLLKWWAQYIEST   63 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~---------~~~~~~~~~~~~~-----~~~-------~~l~~~~a~~~e~~   63 (1074)
                      .+...|++++|+.+|+++-..+ .-+..+         .+++.++.++..+     ++.       +..+..+|..+...
T Consensus        14 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~   92 (258)
T 3uq3_A           14 KFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKL   92 (258)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHc
Confidence            3567899999999999986554 322222         2466666655554     111       57888899999999


Q ss_pred             cCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927         64 EDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus        64 ~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                      |++++|.++|.++-....-..++..+|++++|.+..+.     +.+......+|..|...|++++|+++|.++
T Consensus        93 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  165 (258)
T 3uq3_A           93 GDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEM  165 (258)
T ss_dssp             TCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            99999999999999888888889999999999888763     234556779999999999999999988775

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.09  E-value=8.1e-05  Score=82.38  Aligned_cols=137  Identities=18%  Similarity=0.163  Sum_probs=73.6

Q ss_pred             hhcCCHHHHHHHHHHcCcccchhhhHh--hhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhh
Q psy14927          7 MKNGDIDRAIRMFEKAETHQQHVPRML--LENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVR   84 (1074)
Q Consensus         7 ~~~g~~~eA~~~Ye~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr   84 (1074)
                      ++.|++++|..+++++......  .++  -.++..+..+         ....+..+...|+|++|.++|.++-+.     
T Consensus         2 ~~~~~~~eA~~~~~~a~k~~~~--~~~~~~~~~~~A~~~---------~~~a~~~~~~~g~~~~A~~~~~~al~~-----   65 (307)
T 2ifu_A            2 IAAQKISEAHEHIAKAEKYLKT--SFMKWKPDYDSAASE---------YAKAAVAFKNAKQLEQAKDAYLQEAEA-----   65 (307)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHCC--CSSSCSCCHHHHHHH---------HHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             CccchHHHHHHHHHHHHHHccc--cccCCCCCHHHHHHH---------HHHHHHHHHHcCCHHHHHHHHHHHHHH-----
Confidence            4578899999999988743311  111  0123222222         222244444555555555555444322     


Q ss_pred             HhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHHH
Q psy14927         85 VLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIE  164 (1074)
Q Consensus        85 ~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~  164 (1074)
                       ...++++..+.         .....+|..|..+|++++|+++|.      .|+++..+.|......        ..+..
T Consensus        66 -~~~~~~~~~~a---------~~~~~lg~~~~~~g~~~~A~~~~~------~Al~l~~~~g~~~~~a--------~~~~~  121 (307)
T 2ifu_A           66 -HANNRSLFHAA---------KAFEQAGMMLKDLQRMPEAVQYIE------KASVMYVENGTPDTAA--------MALDR  121 (307)
T ss_dssp             -HHHTTCHHHHH---------HHHHHHHHHHHHTTCGGGGHHHHH------HHHHHHHTTTCHHHHH--------HHHHH
T ss_pred             -HHHcCCHHHHH---------HHHHHHHHHHHhCCCHHHHHHHHH------HHHHHHHHcCCHHHHH--------HHHHH
Confidence             22333332222         235578899999999999999876      4566666554333221        12234


Q ss_pred             HHHHHccCChhHHHHHHHH
Q psy14927        165 AATYLETIEPDKAVLLYHK  183 (1074)
Q Consensus       165 ~A~~~e~~~~~~A~~ly~k  183 (1074)
                      +|..|+.+++++|+.+|.+
T Consensus       122 lg~~~~~g~~~~A~~~~~~  140 (307)
T 2ifu_A          122 AGKLMEPLDLSKAVHLYQQ  140 (307)
T ss_dssp             HHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHH
Confidence            5555555556666666653

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.08  E-value=4.5e-05  Score=85.77  Aligned_cols=28  Identities=11%  Similarity=-0.013  Sum_probs=14.3

Q ss_pred             CChHHHHHHHHHHHhccCHHHHHHHHHH
Q psy14927         48 KDPVLLKWWAQYIESTEDMDLAMKYYEE   75 (1074)
Q Consensus        48 ~~~~l~~~~a~~~e~~~~~~~A~~~y~~   75 (1074)
                      +++..+..+|..+...|++++|.++|.+
T Consensus       130 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~  157 (368)
T 1fch_A          130 DNQTALMALAVSFTNESLQRQACEILRD  157 (368)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3444555555555555555555555544

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.08  E-value=0.00018  Score=78.96  Aligned_cols=100  Identities=16%  Similarity=0.169  Sum_probs=59.4

Q ss_pred             CHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHH-------hcCCh----HHHHHHHHHHHhcCChHHHHHHHHHhCC
Q psy14927         65 DMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELAN-------ASGDT----AAAYHLARQYENSGQFDEAIHFYSVAGS  133 (1074)
Q Consensus        65 ~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~-------~~~~~----~~~~~la~~~~~~g~~~~Ai~~y~~a~~  133 (1074)
                      ++++|+.+|.+++.      ++..+|++++|.+..+       +.++.    .+...+|..|.++|++++|+++|.    
T Consensus        32 ~~~~A~~~~~~a~~------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~----  101 (292)
T 1qqe_A           32 KFEEAADLCVQAAT------IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLE----  101 (292)
T ss_dssp             HHHHHHHHHHHHHH------HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH----
T ss_pred             cHHHHHHHHHHHHH------HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH----
Confidence            36666666655532      3445555555544433       22332    345689999999999999999875    


Q ss_pred             hHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHcc--CChhHHHHHHHHh
Q psy14927        134 CGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLET--IEPDKAVLLYHKA  184 (1074)
Q Consensus       134 ~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~--~~~~~A~~ly~ka  184 (1074)
                        .|+++....|.......        .+..+|..++.  +++++|+.+|.+|
T Consensus       102 --~Al~l~~~~g~~~~~a~--------~~~~lg~~~~~~lg~~~~A~~~~~~A  144 (292)
T 1qqe_A          102 --NAIQIFTHRGQFRRGAN--------FKFELGEILENDLHDYAKAIDCYELA  144 (292)
T ss_dssp             --HHHHHHHHTTCHHHHHH--------HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             --HHHHHHHHcCCHHHHHH--------HHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence              56777666654332221        22345555554  5577777766543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.06  E-value=0.00014  Score=85.10  Aligned_cols=319  Identities=14%  Similarity=0.046  Sum_probs=139.4

Q ss_pred             hcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhh------
Q psy14927          8 KNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLS------   81 (1074)
Q Consensus         8 ~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~------   81 (1074)
                      ..|++++|++.|+++-...    +-....       -..+.....+..+|..+...|++++|..+|.++-....      
T Consensus        63 ~~G~~~eAl~~~~kAl~~~----~~~~~~-------~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~  131 (472)
T 4g1t_A           63 LKGQNEAALECLRKAEELI----QQEHAD-------QAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY  131 (472)
T ss_dssp             HTTCHHHHHHHHHHHHHHH----HHHSGG-------GCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred             HCCCHHHHHHHHHHHHHHH----HhcCcc-------ccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence            4688888888888875211    000000       00112233566678888889999999999888754311      


Q ss_pred             ---hhhH---------hhccCCHHHHHHHHH-----hcCChHHHHHHHHH---HHhcCChHHHHHHHHHhCChHHHHHHH
Q psy14927         82 ---MVRV---------LCFLQDFSRAAELAN-----ASGDTAAAYHLARQ---YENSGQFDEAIHFYSVAGSCGNAVRLC  141 (1074)
Q Consensus        82 ---~vr~---------l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~---~~~~g~~~~Ai~~y~~a~~~~~A~~la  141 (1074)
                         ...+         .+..+++++|.+..+     ++.+..+...++..   +...|+.++|++.|.++      +++-
T Consensus       132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~a------l~l~  205 (472)
T 4g1t_A          132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQA------IRLN  205 (472)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHH------HHHC
T ss_pred             chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHH------hhcC
Confidence               1112         222356778877654     35666666666654   34567778888877653      2110


Q ss_pred             HHhCchHHHHHHh----hhc-CchhHHHHHHHHcc------CC---hhHHHHHHHHhCChHHHHHHHHhhcc--CCcc--
Q psy14927        142 KEQALDDQLWNLA----LSA-GPSEQIEAATYLET------IE---PDKAVLLYHKAGALHKALDLAFKLTL--SNSG--  203 (1074)
Q Consensus       142 ~~~~~~~~~~~l~----~~~-~~~~~~~~A~~~e~------~~---~~~A~~ly~kaG~~~kAl~l~~~~~~--~~~~--  203 (1074)
                      .  +....+..++    ... ....+..+-.+|+.      ..   +...+.+|.+.|++.+|+..+.+.-.  +++.  
T Consensus       206 p--~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~  283 (472)
T 4g1t_A          206 P--DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYL  283 (472)
T ss_dssp             S--SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             C--cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHH
Confidence            0  0000011111    000 00111112222221      11   23345566666666666666655321  1111  


Q ss_pred             -----hHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcC--CCCCChhHHHHHHHHHHccCCHHHHHHHHH
Q psy14927        204 -----LVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSS--DWKSQPELLKSIISFYSKGKAPHLLANFYV  276 (1074)
Q Consensus       204 -----~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~--~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~  276 (1074)
                           .+|.-+....... ..    .......+....+..|..+++..  .....+.....+...|...+.|++|..+|.
T Consensus       284 ~~~lg~~y~~~~~~~~~~-~~----~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~  358 (472)
T 4g1t_A          284 HCQIGCCYRAKVFQVMNL-RE----NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQ  358 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhH-HH----HHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHH
Confidence                 1111111111100 00    00011112223344555555431  122334555677788888888888887776


Q ss_pred             HHHhH-----------------HHHhhcCHHHHHHHHHHHHHHHHhcCCCchHHH--------HHHHH---------HHH
Q psy14927        277 SCAQV-----------------EIDEFGNYEKGLGALNEAKRCLLKHNDSMYETL--------KSSVV---------EKL  322 (1074)
Q Consensus       277 ~~a~~-----------------ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~~--------~~~~~---------~~~  322 (1074)
                      .+-..                 -...-|+|++|...+.+|++.-.+..  ....+        ++.+.         ..+
T Consensus       359 kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~--~~~~~~~~l~~~~~~~l~~~p~~~~~~~~L  436 (472)
T 4g1t_A          359 KEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSR--EKEKMKDKLQKIAKMRLSKNGADSEALHVL  436 (472)
T ss_dssp             HHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCH--HHHHHHHHHHHHHHHHHHHCC-CTTHHHHH
T ss_pred             HHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccH--HHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            54211                 11234778888888777765321110  00000        00010         123


Q ss_pred             HHHHHhhcCChHHHhhHHHHHHHHHhhccCc
Q psy14927        323 AEVEIDEFGNYEKGLGALNEAKRCLLKHNDS  353 (1074)
Q Consensus       323 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  353 (1074)
                      ..+|.. .|+++.|+..|.++-+.-...|.+
T Consensus       437 G~~~~~-~g~~~~A~~~y~kALe~~~~~p~a  466 (472)
T 4g1t_A          437 AFLQEL-NEKMQQADEDSERGLESGSLIPSA  466 (472)
T ss_dssp             HHHHHH-HHHCC-------------------
T ss_pred             HHHHHH-cCCHHHHHHHHHHHHhcCCCCCcH
Confidence            445555 699999999999998877777764

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.05  E-value=0.0001  Score=78.90  Aligned_cols=232  Identities=11%  Similarity=-0.023  Sum_probs=128.5

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHhhC--------hhhhhhHhhccCCHHHHHHHHHh----cCCh----HHHHHHHH
Q psy14927         50 PVLLKWWAQYIESTEDMDLAMKYYEEARD--------YLSMVRVLCFLQDFSRAAELANA----SGDT----AAAYHLAR  113 (1074)
Q Consensus        50 ~~l~~~~a~~~e~~~~~~~A~~~y~~a~d--------~~~~vr~l~~~~~~~~a~~i~~~----~~~~----~~~~~la~  113 (1074)
                      +..+..+|..+...|++++|.++|.++-+        +..+..++..+|++++|.+..+.    +.+.    .+...+|.
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~   82 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK   82 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence            56778899999999999999999998633        23455668889999999887763    1222    23678899


Q ss_pred             HHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHccCChhHHHHHHHHhCChHHHHHH
Q psy14927        114 QYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLETIEPDKAVLLYHKAGALHKALDL  193 (1074)
Q Consensus       114 ~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~~~~~A~~ly~kaG~~~kAl~l  193 (1074)
                      .|...|++++|+++|.++-.      +             .+. ....+..            -+.+|.+.|++.+|++.
T Consensus        83 ~~~~~~~~~~A~~~~~~a~~------~-------------~~~-~~~~~~~------------l~~~~~~~~~~~~A~~~  130 (272)
T 3u4t_A           83 ILMKKGQDSLAIQQYQAAVD------R-------------DTT-RLDMYGQ------------IGSYFYNKGNFPLAIQY  130 (272)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH------H-------------STT-CTHHHHH------------HHHHHHHTTCHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHh------c-------------Ccc-cHHHHHH------------HHHHHHHccCHHHHHHH
Confidence            99999999999988765422      1             011 1122222            33445555555555555


Q ss_pred             HHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHH-HHHhcCCCCCChhHHHHHHHHHHccCCHHH-H
Q psy14927        194 AFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAA-NYLQSSDWKSQPELLKSIISFYSKGKAPHL-L  271 (1074)
Q Consensus       194 ~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa-~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~-a  271 (1074)
                      +.+.-..+                            -.....+...+ ..+...       .+..+..+|.++-.... -
T Consensus       131 ~~~al~~~----------------------------~~~~~~~~~l~~~~~~~~-------~~~~A~~~~~~a~~~~p~~  175 (272)
T 3u4t_A          131 MEKQIRPT----------------------------TTDPKVFYELGQAYYYNK-------EYVKADSSFVKVLELKPNI  175 (272)
T ss_dssp             HGGGCCSS----------------------------CCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHhhcC----------------------------CCcHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhCccc
Confidence            54421100                            01112222222 111111       11112222211110000 0


Q ss_pred             HHHHHHHHhHHHHhhcC---HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhcCChHHHhhHHHHHHHHHh
Q psy14927        272 ANFYVSCAQVEIDEFGN---YEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGNYEKGLGALNEAKRCLL  348 (1074)
Q Consensus       272 a~~~~~~a~~ei~e~~~---y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  348 (1074)
                      ...+...+... ...|+   |+.|...+.++++...+.+... ..........+..+|.. .|+++.|+..|.++-..  
T Consensus       176 ~~~~~~~~~~~-~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~--  250 (272)
T 3u4t_A          176 YIGYLWRARAN-AAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-KDELIEANEYIAYYYTI-NRDKVKADAAWKNILAL--  250 (272)
T ss_dssp             HHHHHHHHHHH-HHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-HHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH--
T ss_pred             hHHHHHHHHHH-HHcCcchhhHHHHHHHHHHHHHHhcccccc-hHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhc--
Confidence            12222233333 33355   8889999999998887655432 22222222345677777 79999999999887654  


Q ss_pred             hccCcc
Q psy14927        349 KHNDSM  354 (1074)
Q Consensus       349 ~~~~~~  354 (1074)
                       .|++.
T Consensus       251 -~p~~~  255 (272)
T 3u4t_A          251 -DPTNK  255 (272)
T ss_dssp             -CTTCH
T ss_pred             -CccHH
Confidence             56543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.03  E-value=0.00011  Score=80.64  Aligned_cols=80  Identities=14%  Similarity=-0.073  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHhhC--------hhhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhc
Q psy14927         52 LLKWWAQYIESTEDMDLAMKYYEEARD--------YLSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENS  118 (1074)
Q Consensus        52 l~~~~a~~~e~~~~~~~A~~~y~~a~d--------~~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~  118 (1074)
                      .+...|..+...|++++|.++|.++-.        +..+..++...|++++|.+..+     .+.+..+...+|..|...
T Consensus        23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~  102 (327)
T 3cv0_A           23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE  102 (327)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHc
Confidence            345567777777888888887777532        2334555777788877777655     245677888999999999


Q ss_pred             CChHHHHHHHHHh
Q psy14927        119 GQFDEAIHFYSVA  131 (1074)
Q Consensus       119 g~~~~Ai~~y~~a  131 (1074)
                      |++++|+++|.++
T Consensus       103 ~~~~~A~~~~~~~  115 (327)
T 3cv0_A          103 HNANAALASLRAW  115 (327)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            9999999988664

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.03  E-value=3.1e-06  Score=98.23  Aligned_cols=101  Identities=15%  Similarity=0.138  Sum_probs=68.7

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhcccccccc---------------chhhhhh----hhh-----------
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL---------------NLETMMG----TKS-----------  838 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~---------------~~~~~~~----~~~-----------  838 (1074)
                      +.+|+|||||++|+.+|+.|++     +++|+.+..++.+               ....+..    ...           
T Consensus        27 ~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  106 (417)
T 3v76_A           27 KQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQDF  106 (417)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHHHH
Confidence            3459999999999999999998     7888877654321               0000000    000           


Q ss_pred             ----------------------HHHhhhhhhHHHHhhhCCeEEEee-eEEEec--CCeEEEEeCCCCeeEEEcCeEEEcc
Q psy14927        839 ----------------------AAVKALTGGIAHLFKSNKVTQLNG-HGKITG--PNTVTVIKSDGSTEEVKTKNILIAT  893 (1074)
Q Consensus       839 ----------------------~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id--~~~~~v~~~~G~~~~i~~d~lIIAT  893 (1074)
                                            .....+...+.+.+.+.||+++.+ +|+.+.  .+.+.|.+.+|   ++.+|+||+||
T Consensus       107 ~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g---~i~ad~VIlAt  183 (417)
T 3v76_A          107 VALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAG---TVDAASLVVAS  183 (417)
T ss_dssp             HHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTE---EEEESEEEECC
T ss_pred             HHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCc---EEEeeEEEECC
Confidence                                  001234445666777789999998 576663  45677777776   79999999999


Q ss_pred             CCCC
Q psy14927        894 GSEV  897 (1074)
Q Consensus       894 G~~p  897 (1074)
                      |+.+
T Consensus       184 G~~S  187 (417)
T 3v76_A          184 GGKS  187 (417)
T ss_dssp             CCSS
T ss_pred             CCcc
Confidence            9986

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.01  E-value=0.0002  Score=77.15  Aligned_cols=126  Identities=21%  Similarity=0.271  Sum_probs=89.6

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchh-----hhHhh------hcHHHHHHHhhc---CCChHHHHHHHHHHHh----ccCHH
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHV-----PRMLL------ENTDKLEKYIIQ---SKDPVLLKWWAQYIES----TEDMD   67 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~-----~~~~~------~~~~~~~~~~~~---~~~~~l~~~~a~~~e~----~~~~~   67 (1074)
                      +...|++++|+.+|+++-......     ..++.      +++.++..+..+   ..++..+..+|..+..    .++++
T Consensus        16 ~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~   95 (273)
T 1ouv_A           16 SYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTN   95 (273)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             HHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHH
Confidence            456789999999999887543221     22222      245555555554   3578888888888888    89999


Q ss_pred             HHHHHHHHhhCh------hhhhhHhhc----cCCHHHHHHHHH---hcCChHHHHHHHHHHHh----cCChHHHHHHHHH
Q psy14927         68 LAMKYYEEARDY------LSMVRVLCF----LQDFSRAAELAN---ASGDTAAAYHLARQYEN----SGQFDEAIHFYSV  130 (1074)
Q Consensus        68 ~A~~~y~~a~d~------~~~vr~l~~----~~~~~~a~~i~~---~~~~~~~~~~la~~~~~----~g~~~~Ai~~y~~  130 (1074)
                      +|.++|.++-+.      ..+..+|..    .+++++|.+..+   +.++..+.+.+|..|..    .+++++|+++|.+
T Consensus        96 ~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~  175 (273)
T 1ouv_A           96 KALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDK  175 (273)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            999888886432      233344666    888888888766   45677788888888888    8888888888876


Q ss_pred             h
Q psy14927        131 A  131 (1074)
Q Consensus       131 a  131 (1074)
                      +
T Consensus       176 a  176 (273)
T 1ouv_A          176 A  176 (273)
T ss_dssp             H
T ss_pred             H
Confidence            5

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.01  E-value=0.00018  Score=77.61  Aligned_cols=84  Identities=23%  Similarity=0.281  Sum_probs=58.4

Q ss_pred             CChHHHHHHHHHHHhccCHHHHHHHHHHhhCh------hhhhhHhhc----cCCHHHHHHHHH---hcCChHHHHHHHHH
Q psy14927         48 KDPVLLKWWAQYIESTEDMDLAMKYYEEARDY------LSMVRVLCF----LQDFSRAAELAN---ASGDTAAAYHLARQ  114 (1074)
Q Consensus        48 ~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~------~~~vr~l~~----~~~~~~a~~i~~---~~~~~~~~~~la~~  114 (1074)
                      .++..+..+|..+...|++++|.++|.++-+.      ..+..++..    .+++++|.+..+   +.++..+.+.+|..
T Consensus         4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~   83 (273)
T 1ouv_A            4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNL   83 (273)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            45667777777777888888888888775331      233444666    777777777665   34567777788888


Q ss_pred             HHh----cCChHHHHHHHHHh
Q psy14927        115 YEN----SGQFDEAIHFYSVA  131 (1074)
Q Consensus       115 ~~~----~g~~~~Ai~~y~~a  131 (1074)
                      |..    .|++++|+++|.++
T Consensus        84 ~~~g~~~~~~~~~A~~~~~~a  104 (273)
T 1ouv_A           84 YYSGQGVSQNTNKALQYYSKA  104 (273)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHH
T ss_pred             HhCCCCcccCHHHHHHHHHHH
Confidence            888    88888888877664

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=97.99  E-value=0.00028  Score=80.31  Aligned_cols=226  Identities=14%  Similarity=0.107  Sum_probs=132.9

Q ss_pred             hhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhCh-------
Q psy14927          7 MKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDY-------   79 (1074)
Q Consensus         7 ~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~-------   79 (1074)
                      -..|++++|+..|+++......++.-    .          .....+.+.|..+...|+++.|.++|.+|-+.       
T Consensus       112 ~~~g~~~~A~~~~~~al~~~~~~~~~----~----------~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~  177 (378)
T 3q15_A          112 FDQKEYVEAIGYYREAEKELPFVSDD----I----------EKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY  177 (378)
T ss_dssp             HHTTCHHHHHHHHHHHHTTGGGCCCH----H----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC
T ss_pred             HHHCCHHHHHHHHHHHHHHHhhCCCh----H----------HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc
Confidence            35688888888888876443222110    0          01346677788888888888888888876432       


Q ss_pred             h--------hhhhHhhccCCHHHHHHHHHh-------cCCh----HHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHH
Q psy14927         80 L--------SMVRVLCFLQDFSRAAELANA-------SGDT----AAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRL  140 (1074)
Q Consensus        80 ~--------~~vr~l~~~~~~~~a~~i~~~-------~~~~----~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~l  140 (1074)
                      .        .+..++..+|++++|.+..++       .++.    .+...+|..|..+|++++|+++|.      +|+++
T Consensus       178 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~------~al~~  251 (378)
T 3q15_A          178 SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ------KAAKV  251 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH------HHHHH
T ss_pred             hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH------HHHHH
Confidence            1        344456778888888776542       2332    346689999999999999999875      45666


Q ss_pred             HHHhCchHHHHHHhhhcCchhHHHHHHHHcc-CChhHHHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHH-hcCC
Q psy14927        141 CKEQALDDQLWNLALSAGPSEQIEAATYLET-IEPDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCL-LKSG  218 (1074)
Q Consensus       141 a~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~-~~~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l-~~~~  218 (1074)
                      ++..+....         ...+...|..+.. +++++|..+|.+      |++++.+.+  +..+...+..+..+ ...+
T Consensus       252 ~~~~~~~~~---------~~~~~~la~~~~~~g~~~~A~~~~~~------al~~~~~~~--~~~~~~~~~~l~~ly~~~~  314 (378)
T 3q15_A          252 SREKVPDLL---------PKVLFGLSWTLCKAGQTQKAFQFIEE------GLDHITARS--HKFYKELFLFLQAVYKETV  314 (378)
T ss_dssp             HHHHCGGGH---------HHHHHHHHHHHHHTTCHHHHHHHHHH------HHHHCCTTC--CSCHHHHHHHHHHHHSSSC
T ss_pred             HHhhCChhH---------HHHHHHHHHHHHHCCCHHHHHHHHHH------HHHHHHHcC--CHHHHHHHHHHHHHHhCCC
Confidence            666532221         1222234443333 555666555543      233222211  11111111111112 1122


Q ss_pred             ChhhHHHhhhhcchHHHHHHHHHHHhcC-CCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHhHH
Q psy14927        219 DTNKIIFFAGVSRMKEIYVMAANYLQSS-DWKSQPELLKSIISFYSKGKAPHLLANFYVSCAQVE  282 (1074)
Q Consensus       219 ~~~~~i~~a~~~r~~~l~~~aa~yl~~~-~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~a~~e  282 (1074)
                      +             .+.+..|..|++.. .+...+.....+..+|.+.|.+++|..+|..+-...
T Consensus       315 ~-------------~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~  366 (378)
T 3q15_A          315 D-------------ERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ  366 (378)
T ss_dssp             C-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             c-------------HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            2             25567777777764 222233455668999999999999999988885443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=97.97  E-value=0.00064  Score=73.88  Aligned_cols=188  Identities=13%  Similarity=0.075  Sum_probs=100.8

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHH
Q psy14927         50 PVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYS  129 (1074)
Q Consensus        50 ~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~  129 (1074)
                      ...+..+|..+...|++++|.++|.++-..      ....+..       .......+...+|..|...|++++|+++|.
T Consensus        27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------~~~~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~   93 (311)
T 3nf1_A           27 LRTLHNLVIQYASQGRYEVAVPLCKQALED------LEKTSGH-------DHPDVATMLNILALVYRDQNKYKDAANLLN   93 (311)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------HHHHHCS-------SSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------HHHHcCC-------CCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            456777899999999999999999776443      1111100       011123456789999999999999999875


Q ss_pred             HhCChHHHHHHHHHh--CchHHHHHHhhhcCchhHHHHHHHHcc-CChhHHHHHHHHhCChHHHHHHHHhhccCCcc--h
Q psy14927        130 VAGSCGNAVRLCKEQ--ALDDQLWNLALSAGPSEQIEAATYLET-IEPDKAVLLYHKAGALHKALDLAFKLTLSNSG--L  204 (1074)
Q Consensus       130 ~a~~~~~A~~la~~~--~~~~~~~~l~~~~~~~~~~~~A~~~e~-~~~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~--~  204 (1074)
                            +|++++++.  +....        ....+...|..+.. +++++|..+|.++      ++++.+....+..  .
T Consensus        94 ------~al~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~a------~~~~~~~~~~~~~~~~  153 (311)
T 3nf1_A           94 ------DALAIREKTLGKDHPA--------VAATLNNLAVLYGKRGKYKEAEPLCKRA------LEIREKVLGKDHPDVA  153 (311)
T ss_dssp             ------HHHHHHHHHHCTTCHH--------HHHHHHHHHHHHHTTTCHHHHHHHHHHH------HHHHHHHHCTTCHHHH
T ss_pred             ------HHHHHHHHHhCCCChH--------HHHHHHHHHHHHHHcCcHHHHHHHHHHH------HHHHHHhcCCCChHHH
Confidence                  456665544  11000        01223345555544 6777777777654      3333221000000  0


Q ss_pred             HHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcCCCCCCh---hHHHHHHHHHHccCCHHHHHHHHHHHH
Q psy14927        205 VFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQP---ELLKSIISFYSKGKAPHLLANFYVSCA  279 (1074)
Q Consensus       205 ~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~~~~~~~---~~~~~i~~~Y~k~~~~~~aa~~~~~~a  279 (1074)
                      ..+..-..++.+.|+.++++.+..         .+.+.........+|   .....+..+|...|++++|..++..+-
T Consensus       154 ~~~~~la~~~~~~~~~~~A~~~~~---------~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  222 (311)
T 3nf1_A          154 KQLNNLALLCQNQGKYEEVEYYYQ---------RALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL  222 (311)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHH---------HHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH---------HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            011222344566777766655433         333333332112222   223344566666666666665555553

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=97.96  E-value=1.4e-05  Score=97.03  Aligned_cols=45  Identities=22%  Similarity=0.345  Sum_probs=34.2

Q ss_pred             CCCeeeCCCCCCCCCCEEEecccCC-C--------CCcHHHHHHHHHHHHHHhh
Q psy14927       1027 KGRVPVNSRFQTVIPNIFAIGDCIH-G--------PMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1027 ~G~I~Vd~~~~ts~~~IyAiGD~~~-~--------~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                      -|.|.||.+.+|++||+||+|+|+. +        ......++-.|++|+.+++
T Consensus       359 ~GGi~vd~~~~~~IpGLyAaGe~a~~g~hGanrl~gnsl~~~~vfGr~Ag~~aa  412 (602)
T 1kf6_A          359 MGGIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQAT  412 (602)
T ss_dssp             CCEEECCTTSBCSSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEECCCCccccCCEEEccccccccccCCCCCccHHHHHHHHHHHHHHHHHH
Confidence            4779999999999999999999863 1        1123456666888888765

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=97.95  E-value=7.5e-06  Score=87.05  Aligned_cols=100  Identities=18%  Similarity=0.180  Sum_probs=65.7

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhccccccccchh---------hhhhhhh----HHHhhhhhhHHHHhhhC-C
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLE---------TMMGTKS----AAVKALTGGIAHLFKSN-K  856 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~---------~~~~~~~----~~~~~l~~~~~~~l~~~-g  856 (1074)
                      +|+||||||+|+++|..|++     +++|+.....+ +...         .+.....    .....+...+.+.+.+. |
T Consensus         5 dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G-~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~~~~~~g   83 (232)
T 2cul_A            5 QVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVM-MPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRP   83 (232)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTT-CCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTT
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCC-cccCccccccchhhHHhhhccCCCCCHHHHHHHHHHHHHcCCC
Confidence            49999999999999999998     67777532222 1100         0000000    00124445567777776 9


Q ss_pred             eEEEeeeEEEecC--CeE-EEEeCCCCeeEEEcCeEEEccCCCCC
Q psy14927        857 VTQLNGHGKITGP--NTV-TVIKSDGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       857 V~~~~g~v~~id~--~~~-~v~~~~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      |+++..+|+.+..  +.+ .|.+.+|  .++.+|.||+|||..+.
T Consensus        84 v~i~~~~v~~i~~~~~~v~~v~~~~g--~~i~a~~VV~A~G~~s~  126 (232)
T 2cul_A           84 LHLFQATATGLLLEGNRVVGVRTWEG--PPARGEKVVLAVGSFLG  126 (232)
T ss_dssp             EEEEECCEEEEEEETTEEEEEEETTS--CCEECSEEEECCTTCSS
T ss_pred             cEEEEeEEEEEEEeCCEEEEEEECCC--CEEECCEEEECCCCChh
Confidence            9999777777643  332 4667777  57999999999999763

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=97.95  E-value=0.00041  Score=73.12  Aligned_cols=84  Identities=13%  Similarity=0.139  Sum_probs=59.7

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHhhC-------hhhhhhHhhccCCHHHHHHHHHh-----cCC-------hHHHHH
Q psy14927         50 PVLLKWWAQYIESTEDMDLAMKYYEEARD-------YLSMVRVLCFLQDFSRAAELANA-----SGD-------TAAAYH  110 (1074)
Q Consensus        50 ~~l~~~~a~~~e~~~~~~~A~~~y~~a~d-------~~~~vr~l~~~~~~~~a~~i~~~-----~~~-------~~~~~~  110 (1074)
                      ...+...|..+...|++++|.++|.++-+       +..+..++..+|++++|.+..+.     +.+       ......
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~   84 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR   84 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence            34566667777777888888877777532       23445557777777777776552     122       467779


Q ss_pred             HHHHHHhcCChHHHHHHHHHhCC
Q psy14927        111 LARQYENSGQFDEAIHFYSVAGS  133 (1074)
Q Consensus       111 la~~~~~~g~~~~Ai~~y~~a~~  133 (1074)
                      +|..|...|++++|+++|.++-.
T Consensus        85 l~~~~~~~~~~~~A~~~~~~a~~  107 (258)
T 3uq3_A           85 IGNAYHKLGDLKKTIEYYQKSLT  107 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHh
Confidence            99999999999999999877654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=97.94  E-value=0.00016  Score=77.28  Aligned_cols=110  Identities=13%  Similarity=-0.024  Sum_probs=82.4

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhC-------
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARD-------   78 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d-------   78 (1074)
                      +...|++++|+..|+++-.....                ..+.++..+...|..+...|++++|.++|.++-.       
T Consensus        15 ~~~~~~~~~A~~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~   78 (275)
T 1xnf_A           15 LQPTLQQEVILARMEQILASRAL----------------TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE   78 (275)
T ss_dssp             CCCCHHHHHHHHHHHHHHTSSCC----------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH
T ss_pred             cCccchHHHHHHHHHHHHhcccc----------------cCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHH
Confidence            45668899999999988743200                0011256777888888889999999999888533       


Q ss_pred             -hhhhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927         79 -YLSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus        79 -~~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                       +..+..++...|++++|.+..++     +.+..+...+|..|...|++++|+++|.++
T Consensus        79 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  137 (275)
T 1xnf_A           79 VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAF  137 (275)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence             23456668888999888887662     457788889999999999999999988765

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=97.91  E-value=0.00011  Score=80.07  Aligned_cols=121  Identities=13%  Similarity=0.155  Sum_probs=79.6

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhCh------
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDY------   79 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~------   79 (1074)
                      +...|++++|+.+|+++-...    +-..+.        ........+..+|..+...|++++|.++|.++-..      
T Consensus        37 ~~~~g~~~~A~~~~~~a~~~~----~~~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  104 (311)
T 3nf1_A           37 YASQGRYEVAVPLCKQALEDL----EKTSGH--------DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG  104 (311)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHH----HHHHCS--------SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHcCCHHHHHHHHHHHHHHH----HHHcCC--------CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence            456788888888888876321    000000        01112456777788888999999999988886433      


Q ss_pred             ----------hhhhhHhhccCCHHHHHHHHHhc---------C----ChHHHHHHHHHHHhcCChHHHHHHHHHhCChHH
Q psy14927         80 ----------LSMVRVLCFLQDFSRAAELANAS---------G----DTAAAYHLARQYENSGQFDEAIHFYSVAGSCGN  136 (1074)
Q Consensus        80 ----------~~~vr~l~~~~~~~~a~~i~~~~---------~----~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~  136 (1074)
                                ..+..++...|++++|.+..++.         +    ...+...+|..|...|++++|+++|.+      
T Consensus       105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~------  178 (311)
T 3nf1_A          105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR------  178 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH------
T ss_pred             CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH------
Confidence                      23445577788888888776531         1    223466889999999999999998754      


Q ss_pred             HHHHHHHh
Q psy14927        137 AVRLCKEQ  144 (1074)
Q Consensus       137 A~~la~~~  144 (1074)
                      |++++++.
T Consensus       179 a~~~~~~~  186 (311)
T 3nf1_A          179 ALEIYQTK  186 (311)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            45555443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=97.90  E-value=0.00013  Score=77.29  Aligned_cols=20  Identities=10%  Similarity=0.047  Sum_probs=12.6

Q ss_pred             HHHHHHHhCChHHHHHHHHh
Q psy14927        177 AVLLYHKAGALHKALDLAFK  196 (1074)
Q Consensus       177 A~~ly~kaG~~~kAl~l~~~  196 (1074)
                      .+.+|.+.|++.+|++++.+
T Consensus       215 ~~~~~~~~g~~~~A~~~~~~  234 (252)
T 2ho1_A          215 GIRLAKVFEDRDTAASYGLQ  234 (252)
T ss_dssp             HHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHH
Confidence            44556666777777666555

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=97.89  E-value=0.00044  Score=75.95  Aligned_cols=129  Identities=13%  Similarity=0.109  Sum_probs=100.6

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchh--------hhHhh--hcHHHHHHHhhcCCChH--HHHHHHHHHHhccCHHHHHHHH
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHV--------PRMLL--ENTDKLEKYIIQSKDPV--LLKWWAQYIESTEDMDLAMKYY   73 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~--------~~~~~--~~~~~~~~~~~~~~~~~--l~~~~a~~~e~~~~~~~A~~~y   73 (1074)
                      .-..|++++|+...++......+.        .|.|+  ++++.+..-+...++|.  .+..+++++...+++++|.+.|
T Consensus         9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l   88 (291)
T 3mkr_A            9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAEL   88 (291)
T ss_dssp             HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHH
Confidence            345799999999999876554222        45554  47777777776665554  4567799999999999999999


Q ss_pred             HHh--hC-----h---hhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHhCCh
Q psy14927         74 EEA--RD-----Y---LSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSC  134 (1074)
Q Consensus        74 ~~a--~d-----~---~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~  134 (1074)
                      .+.  .+     .   ..+..+|...|++++|.+..+.+.+..+...+|+.|.++|++++|++.|.++-.+
T Consensus        89 ~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~  159 (291)
T 3mkr_A           89 DREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQ  159 (291)
T ss_dssp             HHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTTCCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence            873  21     1   2334558899999999999999888899999999999999999999999886543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.88  E-value=0.00052  Score=75.20  Aligned_cols=189  Identities=13%  Similarity=0.125  Sum_probs=98.1

Q ss_pred             HHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHccCChhHHHHHHHHhCChHHH
Q psy14927        111 LARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLETIEPDKAVLLYHKAGALHKA  190 (1074)
Q Consensus       111 la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~~~~~A~~ly~kaG~~~kA  190 (1074)
                      .+..|..+|++++|+++|.+      |+++..+.+......        ..+            ...+.+|.+.|++.+|
T Consensus        43 a~~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~a--------~~~------------~~lg~~~~~~g~~~~A   96 (292)
T 1qqe_A           43 AATIYRLRKELNLAGDSFLK------AADYQKKAGNEDEAG--------NTY------------VEAYKCFKSGGNSVNA   96 (292)
T ss_dssp             HHHHHHHTTCTHHHHHHHHH------HHHHHHHTTCHHHHH--------HHH------------HHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHH------HHHHHHHhCCHHHHH--------HHH------------HHHHHHHHHCCCHHHH
Confidence            36677888888888887664      455555443221111        111            2344455555555555


Q ss_pred             HHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhc-C-CCCCChhHHHHHHHHHHccCCH
Q psy14927        191 LDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQS-S-DWKSQPELLKSIISFYSKGKAP  268 (1074)
Q Consensus       191 l~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~-~-~~~~~~~~~~~i~~~Y~k~~~~  268 (1074)
                      +..+.+             |.+...+.|+...+         ...+..++..+.. + +++.--..++++++.+...+..
T Consensus        97 ~~~~~~-------------Al~l~~~~g~~~~~---------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~  154 (292)
T 1qqe_A           97 VDSLEN-------------AIQIFTHRGQFRRG---------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV  154 (292)
T ss_dssp             HHHHHH-------------HHHHHHHTTCHHHH---------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHH-------------HHHHHHHcCCHHHH---------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence            555444             22322234443221         2234444444443 2 1111113333344444444444


Q ss_pred             HHHHHHHHHHHhHHHHhhcCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhcCChHHHhhHHHHHHHHHh
Q psy14927        269 HLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGNYEKGLGALNEAKRCLL  348 (1074)
Q Consensus       269 ~~aa~~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  348 (1074)
                      ..++..+..++..- ..-|+|++|...+..+++.....+.....  .......+..++.. .|+++.|+..|.++-..-.
T Consensus       155 ~~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~l~p  230 (292)
T 1qqe_A          155 ALSNKCFIKCADLK-ALDGQYIEASDIYSKLIKSSMGNRLSQWS--LKDYFLKKGLCQLA-ATDAVAAARTLQEGQSEDP  230 (292)
T ss_dssp             HHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHTTSSCTTTGGG--HHHHHHHHHHHHHH-TTCHHHHHHHHHGGGCC--
T ss_pred             HHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHhcCCcccHH--HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCC
Confidence            44566777777777 77899999999998888765443322111  01112233455667 7999999998888765433


Q ss_pred             hcc
Q psy14927        349 KHN  351 (1074)
Q Consensus       349 ~~~  351 (1074)
                      .|+
T Consensus       231 ~~~  233 (292)
T 1qqe_A          231 NFA  233 (292)
T ss_dssp             ---
T ss_pred             CCC
Confidence            444

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=97.87  E-value=0.0006  Score=76.64  Aligned_cols=126  Identities=17%  Similarity=0.110  Sum_probs=70.0

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccchhhhHh---------hhcHHHHHHHhhc-----CCChHHHHHHHHHHHhccCHHHHH
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQHVPRML---------LENTDKLEKYIIQ-----SKDPVLLKWWAQYIESTEDMDLAM   70 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~---------~~~~~~~~~~~~~-----~~~~~l~~~~a~~~e~~~~~~~A~   70 (1074)
                      .+...|++++|+.+|+++-..+..-+..+         .+++.++..+..+     ++++..+..+|..+...|++++|.
T Consensus        74 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~  153 (365)
T 4eqf_A           74 KRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDAC  153 (365)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHH
Confidence            46788999999999999865432222111         1345444444433     345566666666666666666666


Q ss_pred             HHHHHhhChh------------------hhhhHhhccCCHHHHHHHHHh-----cC--ChHHHHHHHHHHHhcCChHHHH
Q psy14927         71 KYYEEARDYL------------------SMVRVLCFLQDFSRAAELANA-----SG--DTAAAYHLARQYENSGQFDEAI  125 (1074)
Q Consensus        71 ~~y~~a~d~~------------------~~vr~l~~~~~~~~a~~i~~~-----~~--~~~~~~~la~~~~~~g~~~~Ai  125 (1074)
                      ++|.++-...                  .+..++...|++++|.+..++     +.  +......+|..|...|++++|+
T Consensus       154 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~  233 (365)
T 4eqf_A          154 EALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAI  233 (365)
T ss_dssp             HHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHH
Confidence            6666643221                  124455566666666665542     22  4455556666666666666666


Q ss_pred             HHHHH
Q psy14927        126 HFYSV  130 (1074)
Q Consensus       126 ~~y~~  130 (1074)
                      ++|.+
T Consensus       234 ~~~~~  238 (365)
T 4eqf_A          234 DAFNA  238 (365)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65543

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=97.85  E-value=6.2e-06  Score=98.15  Aligned_cols=104  Identities=12%  Similarity=-0.036  Sum_probs=68.2

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhh---hhhh------------------HHHhhhhhh
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMM---GTKS------------------AAVKALTGG  847 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~---~~~~------------------~~~~~l~~~  847 (1074)
                      ..+|+||||||+|+++|+.|++     +++|+.+..+........+   ....                  -....+...
T Consensus        92 ~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~~  171 (497)
T 2bry_A           92 NTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQLL  171 (497)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHHH
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHHH
Confidence            3459999999999999999998     7888876654321000000   0000                  001334445


Q ss_pred             HHHHhhhCCeEEEee-eEEEecC-----CeEEEEe--C-CCCeeEEEcCeEEEccCCCC
Q psy14927        848 IAHLFKSNKVTQLNG-HGKITGP-----NTVTVIK--S-DGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       848 ~~~~l~~~gV~~~~g-~v~~id~-----~~~~v~~--~-~G~~~~i~~d~lIIATG~~p  897 (1074)
                      +.+.+.+.||+++.+ +|+.+..     +.+.|++  . +|+..++.+|+||+|||+.+
T Consensus       172 L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S  230 (497)
T 2bry_A          172 LLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKF  230 (497)
T ss_dssp             HHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTC
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCc
Confidence            667777789999999 5776653     3455655  3 44324689999999999986

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=97.85  E-value=3.2e-05  Score=84.85  Aligned_cols=123  Identities=11%  Similarity=0.090  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHh-CCCEEEeCceEEEEEecCCeE-EEEEeec-------c-CCCCceEEEcCEEEEccCCcccCCccCc
Q psy14927        948 GEVAKQFQRILGK-QGMQFKLGTKVTGASKSGDNI-TVTIENV-------K-DPTKKEELSCDALLVCVGRRPYTHNLGL 1017 (1074)
Q Consensus       948 ~~~~~~~~~~l~~-~gV~i~~~~~v~~i~~~~~~~-~v~~~~~-------~-~~g~~~~i~~D~vi~a~G~~p~~~~l~l 1017 (1074)
                      ..+...+.+.+.+ .||++++++.+.++..+++.+ .+.+...       + ..++..++++|.||+|+|..|+......
T Consensus       119 ~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~~~  198 (284)
T 1rp0_A          119 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGV  198 (284)
T ss_dssp             HHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHHH
T ss_pred             HHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHHHHHH
Confidence            3444556666655 799999999999998765543 4444310       0 0133478999999999998776542211


Q ss_pred             c---ccC--cccCCCCCeeeC-------CCCCCCCCCEEEecccCC--------CCCcHHHHHHHHHHHHHHhh
Q psy14927       1018 E---EIG--IEKDEKGRVPVN-------SRFQTVIPNIFAIGDCIH--------GPMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1018 ~---~~g--l~ld~~G~I~Vd-------~~~~ts~~~IyAiGD~~~--------~~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                      .   ..+  +.+.....+.++       +..+++.|++|++||++.        +| ....+..+|..+|.+|.
T Consensus       199 ~~~~~~g~~~~v~~~~g~~~~~~~~~~v~~~~~~~p~i~a~G~~~~~~~g~~~~gp-~~~~~~~sG~~~a~~i~  271 (284)
T 1rp0_A          199 KRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGP-TFGAMMISGQKAGQLAL  271 (284)
T ss_dssp             HHHHHTTSSSCCCCCEEECHHHHHHHHHHHCEEEETTEEECTHHHHHHHTCEECCS-CCHHHHHHHHHHHHHHH
T ss_pred             HHhhhccCCCCcCCcCCchhhhhhHHHhhccccccCCEEEEeeehhhhcCCCCcCh-HHHHHHHhHHHHHHHHH
Confidence            1   111  111111112222       123567899999999873        23 45678899999999986

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=97.85  E-value=0.0003  Score=77.69  Aligned_cols=68  Identities=10%  Similarity=0.141  Sum_probs=46.6

Q ss_pred             hHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHccCC-----HHHHHHHHHHHHhHHHHhhcCHHHHHHHHHHHHHHHHhc
Q psy14927        232 MKEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKA-----PHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKH  306 (1074)
Q Consensus       232 ~~~l~~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~-----~~~aa~~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~  306 (1074)
                      +.++|...++++...      +.+..+..+|.++-.     .+....++...++.| ...|+++.|...+..+++...+.
T Consensus       202 ~~~~~~~~~~~~~~~------g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~-~~~g~~~~a~~~~~~a~~~~p~~  274 (308)
T 2ond_A          202 IPEYVLAYIDYLSHL------NEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE-SNIGDLASILKVEKRRFTAFREE  274 (308)
T ss_dssp             CHHHHHHHHHHHHTT------CCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHH-HHHSCHHHHHHHHHHHHHHTTTT
T ss_pred             cHHHHHHHHHHHHHC------CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHcccc
Confidence            456777778887766      334455555555433     124556677777888 88999999999998888776653

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=97.84  E-value=1.6e-05  Score=91.15  Aligned_cols=100  Identities=14%  Similarity=0.123  Sum_probs=67.6

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccccccc---cch-h-------------hhhh-----------------
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVK---LNL-E-------------TMMG-----------------  835 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~---~~~-~-------------~~~~-----------------  835 (1074)
                      .+|+||||||+|+++|+.|++     +++|+.+..+..   ..+ +             .+..                 
T Consensus        12 ~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~~~   91 (379)
T 3alj_A           12 RRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHNKSV   91 (379)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEETTEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeCCcee
Confidence            359999999999999999998     788876644320   000 0             0000                 


Q ss_pred             ---------hhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        836 ---------TKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       836 ---------~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                               ...-....+...+.+.+.+.||+++.+ +|+.++.+. .|++.+|  .++.+|.||+|+|..+
T Consensus        92 ~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~-~v~~~~g--~~~~ad~vV~AdG~~s  160 (379)
T 3alj_A           92 SKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADPVG-RLTLQTG--EVLEADLIVGADGVGS  160 (379)
T ss_dssp             EEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEETTT-EEEETTS--CEEECSEEEECCCTTC
T ss_pred             eeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEeCC-EEEECCC--CEEEcCEEEECCCccH
Confidence                     000000233444566677789999999 577776545 7778888  5799999999999986

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=97.82  E-value=0.004  Score=70.14  Aligned_cols=106  Identities=13%  Similarity=0.069  Sum_probs=69.3

Q ss_pred             hhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCCh----HHHHHHHHHHHhccCHHHHHHHHHHhhC----
Q psy14927          7 MKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDP----VLLKWWAQYIESTEDMDLAMKYYEEARD----   78 (1074)
Q Consensus         7 ~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~a~~~e~~~~~~~A~~~y~~a~d----   78 (1074)
                      ...|++++|..+++++-...   |                ..++    ..+...|..+...|++++|.++|.++-.    
T Consensus        25 ~~~g~~~~A~~~~~~al~~~---~----------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~   85 (373)
T 1hz4_A           25 INDGNPDEAERLAKLALEEL---P----------------PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ   85 (373)
T ss_dssp             HHTTCHHHHHHHHHHHHHTC---C----------------TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHcC---C----------------CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHh
Confidence            34677888888777764221   0                0111    2455667777888888888888877543    


Q ss_pred             ---h-------hhhhhHhhccCCHHHHHHHHHh-------cCC---h---HHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927         79 ---Y-------LSMVRVLCFLQDFSRAAELANA-------SGD---T---AAAYHLARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus        79 ---~-------~~~vr~l~~~~~~~~a~~i~~~-------~~~---~---~~~~~la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                         .       ..+..++...|++++|.+..++       .++   .   .....+|..+...|++++|+++|.++
T Consensus        86 ~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  161 (373)
T 1hz4_A           86 HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG  161 (373)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence               2       2345567788998888877653       122   1   23446888899999999999887543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=97.80  E-value=9.1e-05  Score=77.40  Aligned_cols=83  Identities=14%  Similarity=0.062  Sum_probs=66.8

Q ss_pred             CChHHHHHHHHHHHhccCHHHHHHHHHHhhCh--------hhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHH
Q psy14927         48 KDPVLLKWWAQYIESTEDMDLAMKYYEEARDY--------LSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQ  114 (1074)
Q Consensus        48 ~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~--------~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~  114 (1074)
                      .++..+..+|..+...|++++|..+|.++=..        ..+..++..+|++++|....+     .+.+..+.+.+|..
T Consensus         3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~   82 (217)
T 2pl2_A            3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEA   82 (217)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            45778888999999999999999999986433        356677888999999988765     45677888999999


Q ss_pred             HHhc-----------CChHHHHHHHHH
Q psy14927        115 YENS-----------GQFDEAIHFYSV  130 (1074)
Q Consensus       115 ~~~~-----------g~~~~Ai~~y~~  130 (1074)
                      +...           |++++|++.|.+
T Consensus        83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~  109 (217)
T 2pl2_A           83 YVALYRQAEDRERGKGYLEQALSVLKD  109 (217)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhhhhcccccCHHHHHHHHHH
Confidence            9998           888888877654

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=97.79  E-value=0.00044  Score=68.86  Aligned_cols=105  Identities=10%  Similarity=0.030  Sum_probs=85.7

Q ss_pred             HHHHHHhhhcHHHHHHHHHHhhCHHHHHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHHHhcCCHHHHHHHHHHcCCHH
Q psy14927        630 WAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCG  709 (1074)
Q Consensus       630 ~a~~~e~~~~~~~A~~~y~~ag~~~~ai~~~~~~~~~~~a~~v~~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~kag~~~  709 (1074)
                      .++-+++...|+.=.+..+..|+++-|.+||.+++|+.++.=+....++.+....+|+..+..|++..|..+|...|+++
T Consensus        27 ~a~~l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~g~~n~af~~~l~lGdv~  106 (177)
T 3mkq_B           27 EAKKLNDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTREDFGSMLLNTFYNNSTK  106 (177)
T ss_dssp             HHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHCccHHHHHHHHHHcCCHH
Confidence            34445566677777777777777777777777777777777666666777777788999999999999999999999999


Q ss_pred             HHHHH---hccHHHHHHHHHHhCCcccH
Q psy14927        710 NAVRL---CGQLDAVESIASELNVQSDQ  734 (1074)
Q Consensus       710 ~Av~m---a~~w~~a~~~A~~~~~~~~~  734 (1074)
                      ++++|   +++|.+|..+|+.|.+...+
T Consensus       107 ~~i~lL~~~~r~~eA~~~A~t~g~~~~a  134 (177)
T 3mkq_B          107 ERSSIFAEGGSLPLAYAVAKANGDEAAA  134 (177)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHCCChHHHHHHHHHcCcHHHH
Confidence            99999   89999999999999775554

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=97.79  E-value=9.1e-05  Score=91.86  Aligned_cols=138  Identities=23%  Similarity=0.213  Sum_probs=101.8

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhC-------
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARD-------   78 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d-------   78 (1074)
                      +.++|++++|+++|+++-..+                    ++++..+..+|..+...|++++|+++|.+|=.       
T Consensus        19 ~~~~G~~~eAi~~~~kAl~l~--------------------P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~   78 (723)
T 4gyw_A           19 KREQGNIEEAVRLYRKALEVF--------------------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD   78 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC--------------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC--------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            567899999999999886433                    45577888899999999999999999988532       


Q ss_pred             -hhhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHH
Q psy14927         79 -YLSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWN  152 (1074)
Q Consensus        79 -~~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~  152 (1074)
                       +.++..+|..+|++++|.+..+     ++++..+.+.+|..|.++|++++|++.|.++      +++.           
T Consensus        79 a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A------l~l~-----------  141 (723)
T 4gyw_A           79 AYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTA------LKLK-----------  141 (723)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHC-----------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHhC-----------
Confidence             3456667888999999987665     3567788899999999999999999987653      3221           


Q ss_pred             HhhhcCchhHHHHHHHHcc-CChhHHHHHHHH
Q psy14927        153 LALSAGPSEQIEAATYLET-IEPDKAVLLYHK  183 (1074)
Q Consensus       153 l~~~~~~~~~~~~A~~~e~-~~~~~A~~ly~k  183 (1074)
                        + ...+.+...|..+.. +++++|...|.+
T Consensus       142 --P-~~~~a~~~L~~~l~~~g~~~~A~~~~~k  170 (723)
T 4gyw_A          142 --P-DFPDAYCNLAHCLQIVCDWTDYDERMKK  170 (723)
T ss_dssp             --S-CCHHHHHHHHHHHHHTTCCTTHHHHHHH
T ss_pred             --C-CChHHHhhhhhHHHhcccHHHHHHHHHH
Confidence              1 112334445555555 667777776654

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=97.79  E-value=0.0057  Score=72.91  Aligned_cols=136  Identities=9%  Similarity=-0.042  Sum_probs=68.5

Q ss_pred             HHHHHHHHhcCCChhhHHHhhhhcc-----h-HHHHHHHHHHHhcCCCCCChhHHHHHHHHHHccCCHHH-HHHHHHHHH
Q psy14927        207 QIKAMKCLLKSGDTNKIIFFAGVSR-----M-KEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHL-LANFYVSCA  279 (1074)
Q Consensus       207 ~~~a~k~l~~~~~~~~~i~~a~~~r-----~-~~l~~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~-aa~~~~~~a  279 (1074)
                      |..-...+.+.|+.+++..+-..+.     + ..+|...++++...      +.+..+...|.++-.... -...+...+
T Consensus       324 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~------~~~~~A~~~~~~Al~~~~~~~~~~~~~a  397 (530)
T 2ooe_A          324 YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA------EGIKSGRMIFKKAREDARTRHHVYVTAA  397 (530)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHTCTTCCTHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHh------cCHHHHHHHHHHHHhccCCchHHHHHHH
Confidence            4444455555666665544333221     1 13455555555443      333444444444322110 012233334


Q ss_pred             hHHHHhhcCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhcCChHHHhhHHHHHHHHHhhccCcchhHH
Q psy14927        280 QVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETL  358 (1074)
Q Consensus       280 ~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~  358 (1074)
                      ..|....|++++|...+..+++....    .+ ++    -.....++.+ .|+++.|..+|.++-..-...|+....+.
T Consensus       398 ~~~~~~~~~~~~A~~~~e~al~~~p~----~~-~~----~~~~~~~~~~-~g~~~~Ar~~~~~al~~~~~~~~~~~~lw  466 (530)
T 2ooe_A          398 LMEYYCSKDKSVAFKIFELGLKKYGD----IP-EY----VLAYIDYLSH-LNEDNNTRVLFERVLTSGSLPPEKSGEIW  466 (530)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHHHTT----CH-HH----HHHHHHHHTT-TTCHHHHHHHHHHHHHSCCSCGGGCHHHH
T ss_pred             HHHHHHcCChhHHHHHHHHHHHHCCC----CH-HH----HHHHHHHHHh-CCCHhhHHHHHHHHHhccCCCHHHHHHHH
Confidence            45544578888888888888775421    12 11    1222344555 59999998888887554233344344344

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.78  E-value=0.00044  Score=81.11  Aligned_cols=317  Identities=14%  Similarity=0.050  Sum_probs=147.6

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccc-----hhhhHhh--hcH---HHHHHHhhcC--CChHHHHHHHHHHHhcc-----CHH
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQ-----HVPRMLL--ENT---DKLEKYIIQS--KDPVLLKWWAQYIESTE-----DMD   67 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~-----~~~~~~~--~~~---~~~~~~~~~~--~~~~l~~~~a~~~e~~~-----~~~   67 (1074)
                      ...+.|++++|.++|+++-....     ....+|+  +++   .++.++..+.  .++.-+..+|..+...+     +++
T Consensus        12 ~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~   91 (452)
T 3e4b_A           12 EALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHH   91 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHH
Confidence            45677999999999998743321     1122332  233   5555555552  25666677788555544     889


Q ss_pred             HHHHHHHHhhC---h---hhhhhHhhccCCHHH---HHHH---HHhcCChHHHHHHHHHHHhcCChHHH----HHHHHHh
Q psy14927         68 LAMKYYEEARD---Y---LSMVRVLCFLQDFSR---AAEL---ANASGDTAAAYHLARQYENSGQFDEA----IHFYSVA  131 (1074)
Q Consensus        68 ~A~~~y~~a~d---~---~~~vr~l~~~~~~~~---a~~i---~~~~~~~~~~~~la~~~~~~g~~~~A----i~~y~~a  131 (1074)
                      +|.++|.++-+   .   ..+..+|...+..++   +.+.   ..+.++..+.+.+|..|...+.++++    ..++..+
T Consensus        92 ~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a  171 (452)
T 3e4b_A           92 EAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAA  171 (452)
T ss_dssp             HHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence            99999988643   2   233344444443222   2222   22567888899999999988865444    4444443


Q ss_pred             C--ChHHHHHHHHH---hC---chHHHHHH----hhhcCchhH--HHHHHHHccCChhHHHHHHHHhCChHHHHHHHHhh
Q psy14927        132 G--SCGNAVRLCKE---QA---LDDQLWNL----ALSAGPSEQ--IEAATYLETIEPDKAVLLYHKAGALHKALDLAFKL  197 (1074)
Q Consensus       132 ~--~~~~A~~la~~---~~---~~~~~~~l----~~~~~~~~~--~~~A~~~e~~~~~~A~~ly~kaG~~~kAl~l~~~~  197 (1074)
                      .  ..+--+.|+..   .|   ..+..+.+    +...++...  ..+|..|..+..        -.+++.+|++++.+.
T Consensus       172 ~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~--------~~~d~~~A~~~~~~a  243 (452)
T 3e4b_A          172 LNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATL--------GTPDEKTAQALLEKI  243 (452)
T ss_dssp             TTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGG--------SSCCHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--------CCCCHHHHHHHHHHH
Confidence            2  11211222211   11   11111111    111222222  334444433200        003444444444443


Q ss_pred             ccCCcc-hHHHHHHHHHH--hcCCChhhHHHhhhhc---chHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHccCCHHHH
Q psy14927        198 TLSNSG-LVFQIKAMKCL--LKSGDTNKIIFFAGVS---RMKEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLL  271 (1074)
Q Consensus       198 ~~~~~~-~~~~~~a~k~l--~~~~~~~~~i~~a~~~---r~~~l~~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~a  271 (1074)
                      . .++. -++.+ +.-.+  ...+|.++++.+-..+   ...+-+..++.++...  .+.|+++...+.+|.++- ....
T Consensus       244 a-~g~~~a~~~L-g~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G--~g~~~d~~~A~~~~~~Aa-~g~~  318 (452)
T 3e4b_A          244 A-PGYPASWVSL-AQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEG--KWVPADAKAAEAHFEKAV-GREV  318 (452)
T ss_dssp             G-GGSTHHHHHH-HHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC--SSSCCCHHHHHHHHHTTT-TTCH
T ss_pred             c-CCCHHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--CCCCCCHHHHHHHHHHHh-CCCH
Confidence            3 1110 11111 11111  3366776665544432   2334444455544432  255677888888888887 3222


Q ss_pred             HHHHHHHHhHHHHh---hcCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHh---hcCChHHHhhHHHHHHH
Q psy14927        272 ANFYVSCAQVEIDE---FGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEID---EFGNYEKGLGALNEAKR  345 (1074)
Q Consensus       272 a~~~~~~a~~ei~e---~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~  345 (1074)
                      . ....++..-.+-   -.|+.+|...+..|.+    .+....       +..+..+|..   +-.|+.+|...|.+++.
T Consensus       319 ~-A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~----~g~~~A-------~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~  386 (452)
T 3e4b_A          319 A-ADYYLGQIYRRGYLGKVYPQKALDHLLTAAR----NGQNSA-------DFAIAQLFSQGKGTKPDPLNAYVFSQLAKA  386 (452)
T ss_dssp             H-HHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT----TTCTTH-------HHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred             H-HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh----hChHHH-------HHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence            2 222333333121   2399999999888765    233222       1223333433   12588888888888776


Q ss_pred             H
Q psy14927        346 C  346 (1074)
Q Consensus       346 ~  346 (1074)
                      .
T Consensus       387 ~  387 (452)
T 3e4b_A          387 Q  387 (452)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=97.77  E-value=4.2e-05  Score=91.76  Aligned_cols=45  Identities=24%  Similarity=0.258  Sum_probs=34.2

Q ss_pred             CCCeeeCCCCCCCCCCEEEecccCC-C--------CCcHHHHHHHHHHHHHHhh
Q psy14927       1027 KGRVPVNSRFQTVIPNIFAIGDCIH-G--------PMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1027 ~G~I~Vd~~~~ts~~~IyAiGD~~~-~--------~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                      -|.|.||...+|++||+||+|+|+. +        ......|+--|++|+.+++
T Consensus       354 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa  407 (540)
T 1chu_A          354 CGGVMVDDHGRTDVEGLYAIGEVSYTGLHGANRMASNSLLECLVYGWSAAEDIT  407 (540)
T ss_dssp             SCEEECCTTCBCSSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             cCcEEECCCCCCccCCEEeccccccccccCCCcCcchhHHHHHHHHHHHHHHHH
Confidence            4779999999999999999999973 2        1123456667888888775

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=97.77  E-value=0.00042  Score=71.31  Aligned_cols=20  Identities=25%  Similarity=0.237  Sum_probs=15.1

Q ss_pred             hhhcCCHHHHHHHHHHcCcc
Q psy14927          6 TMKNGDIDRAIRMFEKAETH   25 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~   25 (1074)
                      +...|++++|+++|+++-..
T Consensus        18 ~~~~~~~~~A~~~~~~~~~~   37 (225)
T 2vq2_A           18 YMRGQDYRQATASIEDALKS   37 (225)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHh
Confidence            45678888998888876543

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=97.75  E-value=4e-05  Score=91.53  Aligned_cols=43  Identities=19%  Similarity=0.210  Sum_probs=38.5

Q ss_pred             eeeCCCCCC-CCCCEEEecccCCCCCcHHHHHHHHHHHHHHhhC
Q psy14927       1030 VPVNSRFQT-VIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus      1030 I~Vd~~~~t-s~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I~~ 1072 (1074)
                      |.+|++++| +++|+|+|||+++....+..|..+|..+|..|+.
T Consensus       497 i~~~~~~~~~~~~gly~~GegaG~a~gi~~Aa~~G~~~a~~i~~  540 (549)
T 3nlc_A          497 IKRGKDFQSVNLKGFYPAGEGAGYAGGILSAGIDGIKVAEAVAR  540 (549)
T ss_dssp             CCCTTTTSCTTCBTEEECHHHHTSCCSHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCceECCcCCEEEccccCChhhHHHHHHHHHHHHHHHHHH
Confidence            678899998 8999999999999877888999999999998863

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=97.74  E-value=3.2e-05  Score=90.74  Aligned_cols=103  Identities=18%  Similarity=0.202  Sum_probs=68.3

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhcccccccc--------------chhhhhh-------hh---------h
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL--------------NLETMMG-------TK---------S  838 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~--------------~~~~~~~-------~~---------~  838 (1074)
                      ..+|+|||||++|+++|+.|++     +++|+.+..+...              .+..+..       ..         .
T Consensus        26 ~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (447)
T 2i0z_A           26 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNE  105 (447)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHH
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhcCHH
Confidence            3459999999999999999998     7888766543211              0000000       00         0


Q ss_pred             H-------------------------HHhhhhhhHHHHhhhCCeEEEee-eEEEec--CCe-EEEEeCCCCeeEEEcCeE
Q psy14927        839 A-------------------------AVKALTGGIAHLFKSNKVTQLNG-HGKITG--PNT-VTVIKSDGSTEEVKTKNI  889 (1074)
Q Consensus       839 ~-------------------------~~~~l~~~~~~~l~~~gV~~~~g-~v~~id--~~~-~~v~~~~G~~~~i~~d~l  889 (1074)
                      .                         ....+...+.+.+.+.||+++.+ +|+.+.  .+. +.|.+.+|  .++.+|.|
T Consensus       106 ~~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G--~~i~Ad~V  183 (447)
T 2i0z_A          106 DIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTG--EVLETNHV  183 (447)
T ss_dssp             HHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTC--CEEECSCE
T ss_pred             HHHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCC--CEEECCEE
Confidence            0                         01233344666677789999998 576664  344 66777887  46999999


Q ss_pred             EEccCCCCC
Q psy14927        890 LIATGSEVT  898 (1074)
Q Consensus       890 IIATG~~p~  898 (1074)
                      |+|||+.+.
T Consensus       184 VlAtGg~s~  192 (447)
T 2i0z_A          184 VIAVGGKSV  192 (447)
T ss_dssp             EECCCCSSS
T ss_pred             EECCCCCcC
Confidence            999999863

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=97.73  E-value=0.00015  Score=76.05  Aligned_cols=105  Identities=17%  Similarity=0.259  Sum_probs=46.6

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhCh------
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDY------   79 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~------   79 (1074)
                      +...|++++|+.+|+++-...                    +.++..+..+|..+...|++++|.++|.++-+.      
T Consensus        33 ~~~~~~~~~A~~~~~~~l~~~--------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~   92 (243)
T 2q7f_A           33 GSEFGDYEKAAEAFTKAIEEN--------------------KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAAT   92 (243)
T ss_dssp             ---------CCTTHHHHHTTC--------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHhhCHHHHHHHHHHHHHhC--------------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchH
Confidence            345567777777777664332                    223444445555555555555555555543221      


Q ss_pred             --hhhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHHHHHhcCChHHHHHHHHH
Q psy14927         80 --LSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLARQYENSGQFDEAIHFYSV  130 (1074)
Q Consensus        80 --~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~~~~~~g~~~~Ai~~y~~  130 (1074)
                        ..+.+++...|++++|.+..+.     +.+......+|..+...|++++|+++|.+
T Consensus        93 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  150 (243)
T 2q7f_A           93 AYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQR  150 (243)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence              1233344455555555544431     23344445555555555555555555444

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=97.72  E-value=0.00012  Score=86.48  Aligned_cols=123  Identities=15%  Similarity=0.111  Sum_probs=87.4

Q ss_pred             cCCHHHHHHHHHHcCcccchhhhHh-------h--hcH-HHHHHHhhc-----CCChHHHHHHHHHHHhccCHHHHHHHH
Q psy14927          9 NGDIDRAIRMFEKAETHQQHVPRML-------L--ENT-DKLEKYIIQ-----SKDPVLLKWWAQYIESTEDMDLAMKYY   73 (1074)
Q Consensus         9 ~g~~~eA~~~Ye~~~~~~~~~~~~~-------~--~~~-~~~~~~~~~-----~~~~~l~~~~a~~~e~~~~~~~A~~~y   73 (1074)
                      .+++++|++.+++.......-++.+       .  +++ .++.++..+     ++++..|..+|..+...|++++|.++|
T Consensus        81 ~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~  160 (474)
T 4abn_A           81 QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCF  160 (474)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3457888888877654433222222       1  366 666555554     566888899999999999999999999


Q ss_pred             HHhhCh-------hhhhhHhhcc---------CCHHHHHHHHHh-----cCChHHHHHHHHHHHhc--------CChHHH
Q psy14927         74 EEARDY-------LSMVRVLCFL---------QDFSRAAELANA-----SGDTAAAYHLARQYENS--------GQFDEA  124 (1074)
Q Consensus        74 ~~a~d~-------~~~vr~l~~~---------~~~~~a~~i~~~-----~~~~~~~~~la~~~~~~--------g~~~~A  124 (1074)
                      .++=..       ..+..+|..+         |++++|.+..++     +.+..+.+.+|..|...        |++++|
T Consensus       161 ~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A  240 (474)
T 4abn_A          161 SGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA  240 (474)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence            987543       3455667778         888888887763     46777888888888888        888888


Q ss_pred             HHHHHHh
Q psy14927        125 IHFYSVA  131 (1074)
Q Consensus       125 i~~y~~a  131 (1074)
                      +++|.++
T Consensus       241 ~~~~~~a  247 (474)
T 4abn_A          241 LSAYAQA  247 (474)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8776543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=97.66  E-value=0.0018  Score=64.88  Aligned_cols=138  Identities=14%  Similarity=0.064  Sum_probs=102.8

Q ss_pred             hHHHHHHHHHHHHhhhcHHHHHHHHHHh-----hC---HHHHHHHHHHcCCHHHHHHHHH----hc-CCcHHHHHHHHHH
Q psy14927        623 YRVLLKWWAQYIESTEDMDLAMKYYEEA-----RD---YLSMVRVLCFLQDFSRAAELAN----AS-GDTAAAYHLARQY  689 (1074)
Q Consensus       623 ~~~l~~~~a~~~e~~~~~~~A~~~y~~a-----g~---~~~ai~~~~~~~~~~~a~~v~~----~~-~~~~~~~~~A~~~  689 (1074)
                      ++.++...|......|+|++|+++|.++     .+   +-....+|...++|++|....+    .. ........+|..+
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN   83 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence            3568888899999999999999999998     23   3344556899999999997773    23 3344444889999


Q ss_pred             HhcCCHHHHHHHHHHcCC-----HHHHHHH------hccHHHHHHHHHHhC--CcccHHHHHHHHHHHHHcCCHHHHHHH
Q psy14927        690 ENSGQFDEAIHFYSVAGS-----CGNAVRL------CGQLDAVESIASELN--VQSDQDLILKCASYFARREHHDRAVQM  756 (1074)
Q Consensus       690 ~~~g~~~~A~~~~~kag~-----~~~Av~m------a~~w~~a~~~A~~~~--~~~~~~~~~~~a~~~~~~~~~~~Ai~~  756 (1074)
                      ...++++.|.+.|.++-.     +.--..+      .++|++|...-++..  .+..++.+..+|.-+...|++++|+++
T Consensus        84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~  163 (184)
T 3vtx_A           84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKY  163 (184)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHH
Confidence            999999999999988732     2111111      488888887766642  345568889999998999999999888


Q ss_pred             HHHh
Q psy14927        757 YAIA  760 (1074)
Q Consensus       757 y~~a  760 (1074)
                      |.++
T Consensus       164 ~~~a  167 (184)
T 3vtx_A          164 FKKA  167 (184)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8765

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=97.65  E-value=0.0013  Score=70.12  Aligned_cols=240  Identities=13%  Similarity=0.070  Sum_probs=112.1

Q ss_pred             HhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHH
Q psy14927         61 ESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRL  140 (1074)
Q Consensus        61 e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~l  140 (1074)
                      ...|++++|.++|.+|-+....+  + ..+++          ....+...+|..|...|++++|+++|.+      |+++
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~--~-~~~~~----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~------al~~   72 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKT--S-GHDHP----------DVATMLNILALVYRDQNKYKEAAHLLND------ALAI   72 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHH--H-CSSSH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHH------HHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHh--c-CCCCH----------HHHHHHHHHHHHHHHcccHHHHHHHHHH------HHHH
Confidence            35777788888877665542110  0 11112          2345677899999999999999999754      5666


Q ss_pred             HHHh--CchHHHHHHhhhcCchhHHHHHHHHcc-CChhHHHHHHHHhCChHHHHHHHHhhccCCc-ch-HHHHHHHHHHh
Q psy14927        141 CKEQ--ALDDQLWNLALSAGPSEQIEAATYLET-IEPDKAVLLYHKAGALHKALDLAFKLTLSNS-GL-VFQIKAMKCLL  215 (1074)
Q Consensus       141 a~~~--~~~~~~~~l~~~~~~~~~~~~A~~~e~-~~~~~A~~ly~kaG~~~kAl~l~~~~~~~~~-~~-~~~~~a~k~l~  215 (1074)
                      +++.  +.....        ...+...|..+.. +++++|..+|.++      ++++.+....++ .. ..+..-..++.
T Consensus        73 ~~~~~~~~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~~~la~~~~  138 (283)
T 3edt_B           73 REKTLGKDHPAV--------AATLNNLAVLYGKRGKYKEAEPLCKRA------LEIREKVLGKFHPDVAKQLNNLALLCQ  138 (283)
T ss_dssp             HHHHTCTTCHHH--------HHHHHHHHHHHHTTTCHHHHHHHHHHH------HHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCcchHH--------HHHHHHHHHHHHHhccHHHHHHHHHHH------HHHHHHHcCCCChHHHHHHHHHHHHHH
Confidence            6554  111110        1223345555554 6778887777654      333333211110 00 01112233445


Q ss_pred             cCCChhhHHHhhhhcchHHHHHHHHHHHhcCCCCCCh---hHHHHHHHHHHccCCHHHHHHHHHHHHhHHH-Hhhc----
Q psy14927        216 KSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQP---ELLKSIISFYSKGKAPHLLANFYVSCAQVEI-DEFG----  287 (1074)
Q Consensus       216 ~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~~~~~~~---~~~~~i~~~Y~k~~~~~~aa~~~~~~a~~ei-~e~~----  287 (1074)
                      ..|+.++++.+..         .+.+.........+|   .....+..+|.+.|.+++|..++..+-..-- ..++    
T Consensus       139 ~~g~~~~A~~~~~---------~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~  209 (283)
T 3edt_B          139 NQGKAEEVEYYYR---------RALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNG  209 (283)
T ss_dssp             TTTCHHHHHHHHH---------HHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCS
T ss_pred             HcCCHHHHHHHHH---------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcch
Confidence            5666665554433         222222222111222   2233345555555555555555554433210 0000    


Q ss_pred             ----------------CHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhcCChHHHhhHHHHHHH
Q psy14927        288 ----------------NYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGNYEKGLGALNEAKR  345 (1074)
Q Consensus       288 ----------------~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  345 (1074)
                                      +.......+.++...+.......|...  .....+..+|.+ .|+++.|..+|.++-.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~la~~~~~-~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          210 DNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN--TTLRSLGALYRR-QGKLEAAHTLEDCASR  280 (283)
T ss_dssp             SCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH--HHHHHHHHHHHH-TTCHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH--HHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence                            000001112222223333332333221  122245677777 7999999999987753

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=97.62  E-value=0.0029  Score=66.66  Aligned_cols=84  Identities=11%  Similarity=-0.053  Sum_probs=66.5

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHhhCh--------hhhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHHHHH
Q psy14927         50 PVLLKWWAQYIESTEDMDLAMKYYEEARDY--------LSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLARQYE  116 (1074)
Q Consensus        50 ~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~--------~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~~~~  116 (1074)
                      +..+...|..+...|++++|.++|.++-+.        ..+..++...|++++|.+..++     +.+......+|..|.
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  116 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY  116 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence            456777899999999999999999886432        3456668889999999887662     456677888999999


Q ss_pred             hcCChHHHHHHHHHhCC
Q psy14927        117 NSGQFDEAIHFYSVAGS  133 (1074)
Q Consensus       117 ~~g~~~~Ai~~y~~a~~  133 (1074)
                      ..|++++|+++|.++-.
T Consensus       117 ~~g~~~~A~~~~~~~~~  133 (252)
T 2ho1_A          117 EQKRYEEAYQRLLEASQ  133 (252)
T ss_dssp             HTTCHHHHHHHHHHHTT
T ss_pred             HHhHHHHHHHHHHHHHh
Confidence            99999999998877654

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=97.60  E-value=0.00067  Score=67.16  Aligned_cols=126  Identities=15%  Similarity=0.188  Sum_probs=90.5

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchhhhHh-------h--hcHHHHHHHhhc-----CCChHHHHHHHHHHHhccCHHHHHH
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHVPRML-------L--ENTDKLEKYIIQ-----SKDPVLLKWWAQYIESTEDMDLAMK   71 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~-------~--~~~~~~~~~~~~-----~~~~~l~~~~a~~~e~~~~~~~A~~   71 (1074)
                      +...|++++|+..|+++-.....-+..+       .  +++..+..++.+     +.++..+..+|..+...|++++|.+
T Consensus        18 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~   97 (186)
T 3as5_A           18 HAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVP   97 (186)
T ss_dssp             HHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHH
Confidence            4567999999999999876543332222       1  466665555554     4667788888888888889988888


Q ss_pred             HHHHhhC--------hhhhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927         72 YYEEARD--------YLSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus        72 ~y~~a~d--------~~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                      +|.++-.        +..+.+++...|++++|.+..++     +.+......+|..|...|++++|+++|.++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  170 (186)
T 3as5_A           98 LLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA  170 (186)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            8887533        23455667788888888877653     345677778888888888888888877654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=97.55  E-value=0.0099  Score=64.96  Aligned_cols=97  Identities=7%  Similarity=-0.042  Sum_probs=68.0

Q ss_pred             hhcHHHHHHHhhc--CCChH----HHHHHHHHHHhccCHHHHHHHHHHhhCh-----hhhhhHhhccCCHHHHHHHHHh-
Q psy14927         34 LENTDKLEKYIIQ--SKDPV----LLKWWAQYIESTEDMDLAMKYYEEARDY-----LSMVRVLCFLQDFSRAAELANA-  101 (1074)
Q Consensus        34 ~~~~~~~~~~~~~--~~~~~----l~~~~a~~~e~~~~~~~A~~~y~~a~d~-----~~~vr~l~~~~~~~~a~~i~~~-  101 (1074)
                      .+++..+.++..+  ..+|.    ....+++.+...|+++.|...+......     ..+..+|+..++.++|.+..++ 
T Consensus        12 ~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~l   91 (291)
T 3mkr_A           12 IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDRE   91 (291)
T ss_dssp             TTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            4677777777654  23333    4456689999999999999877554221     2234457778888888776652 


Q ss_pred             ------cCChHHHHHHHHHHHhcCChHHHHHHHHH
Q psy14927        102 ------SGDTAAAYHLARQYENSGQFDEAIHFYSV  130 (1074)
Q Consensus       102 ------~~~~~~~~~la~~~~~~g~~~~Ai~~y~~  130 (1074)
                            +++....+.+|..+...|++++|++.|.+
T Consensus        92 l~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~  126 (291)
T 3mkr_A           92 MSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ  126 (291)
T ss_dssp             HHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred             HhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC
Confidence                  34566778888888888998888888776

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=97.55  E-value=0.00056  Score=73.06  Aligned_cols=84  Identities=12%  Similarity=0.068  Sum_probs=57.0

Q ss_pred             CCChHHHHHHHHHHHhccCHHHHHHHHHHhhCh--------hhhhhHhhccCCHHHHHHHHHh----cCChHHHHHHHHH
Q psy14927         47 SKDPVLLKWWAQYIESTEDMDLAMKYYEEARDY--------LSMVRVLCFLQDFSRAAELANA----SGDTAAAYHLARQ  114 (1074)
Q Consensus        47 ~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~--------~~~vr~l~~~~~~~~a~~i~~~----~~~~~~~~~la~~  114 (1074)
                      +.++..+..+|..+...|++++|.++|.++-..        ..+..++..+|++++|.+..+.    ..+..........
T Consensus        74 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  153 (275)
T 1xnf_A           74 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYL  153 (275)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            455778888888888888888888888876442        3445567888888888877653    1222233333344


Q ss_pred             HHhcCChHHHHHHHHH
Q psy14927        115 YENSGQFDEAIHFYSV  130 (1074)
Q Consensus       115 ~~~~g~~~~Ai~~y~~  130 (1074)
                      +...|++++|+++|.+
T Consensus       154 ~~~~~~~~~A~~~~~~  169 (275)
T 1xnf_A          154 AEQKLDEKQAKEVLKQ  169 (275)
T ss_dssp             HHHHHCHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHH
Confidence            5666888888888754

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=97.54  E-value=0.00031  Score=79.51  Aligned_cols=60  Identities=15%  Similarity=0.242  Sum_probs=48.1

Q ss_pred             CHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEcCEEEEccCCcc
Q psy14927        947 DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRP 1010 (1074)
Q Consensus       947 ~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p 1010 (1074)
                      +..+...+.+.+++.|++++++++|+++..++++ +.|.+.+    |+..++.+|.||+|+|...
T Consensus       149 ~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~----g~~~~~~a~~VV~A~G~~s  209 (369)
T 3dme_A          149 SHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGG----AEPMTLSCRVLINAAGLHA  209 (369)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSSEEEEECT----TSCEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCceEEEEECC----CceeEEEeCEEEECCCcch
Confidence            3567778888899999999999999999987655 6665443    5457899999999999753

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=97.52  E-value=0.0013  Score=68.66  Aligned_cols=112  Identities=11%  Similarity=0.167  Sum_probs=87.5

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhC------
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARD------   78 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d------   78 (1074)
                      .+...|++++|+..|+++-..+.                   ..++..+.+.|..+...|++++|.++|.++-.      
T Consensus        16 ~~~~~~~~~~A~~~~~~al~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~   76 (228)
T 4i17_A           16 DALNAKNYAVAFEKYSEYLKLTN-------------------NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLA   76 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTT-------------------TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHH
T ss_pred             HHHHccCHHHHHHHHHHHHhccC-------------------CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchH
Confidence            35567888888888888764330                   14567788899999999999999999998643      


Q ss_pred             --hhhhhhHhhccCCHHHHHHHHHh-----cCCh-------HHHHHHHHHHHhcCChHHHHHHHHHhCChH
Q psy14927         79 --YLSMVRVLCFLQDFSRAAELANA-----SGDT-------AAAYHLARQYENSGQFDEAIHFYSVAGSCG  135 (1074)
Q Consensus        79 --~~~~vr~l~~~~~~~~a~~i~~~-----~~~~-------~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~  135 (1074)
                        +..+..++..+|++++|.+..++     +.+.       .....+|..+...|++++|+++|.++-..+
T Consensus        77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~  147 (228)
T 4i17_A           77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT  147 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC
Confidence              34566778899999999887763     4455       457789999999999999999998886643

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=97.50  E-value=0.00083  Score=67.28  Aligned_cols=141  Identities=15%  Similarity=0.143  Sum_probs=94.0

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhh---
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLS---   81 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~---   81 (1074)
                      .+...|++++|+..|+++-..+                    ++++..+..+|..+...|++++|.++|.++-....   
T Consensus        15 ~~~~~g~~~~A~~~~~~al~~~--------------------P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~   74 (176)
T 2r5s_A           15 ELLQQGEHAQALNVIQTLSDEL--------------------QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNS   74 (176)
T ss_dssp             HHHHTTCHHHHHHHHHTSCHHH--------------------HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHC--------------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChH
Confidence            4567888899998888877433                    34578899999999999999999999988744321   


Q ss_pred             h----hhH-hhcc-CC---HHHHHHHHH-hcCChHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHH
Q psy14927         82 M----VRV-LCFL-QD---FSRAAELAN-ASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLW  151 (1074)
Q Consensus        82 ~----vr~-l~~~-~~---~~~a~~i~~-~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~  151 (1074)
                      .    ..+ +... +.   .....+... .+++..+.+.+|..+...|++++|++.|.++-..+                
T Consensus        75 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----------------  138 (176)
T 2r5s_A           75 YKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVN----------------  138 (176)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----------------
T ss_pred             HHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC----------------
Confidence            1    111 1111 11   222222222 56788899999999999999999999887542211                


Q ss_pred             HHhhhc-CchhHHHHHHHHcc-CChhHHHHHHHHh
Q psy14927        152 NLALSA-GPSEQIEAATYLET-IEPDKAVLLYHKA  184 (1074)
Q Consensus       152 ~l~~~~-~~~~~~~~A~~~e~-~~~~~A~~ly~ka  184 (1074)
                         +.. .+......+..|.. |++++|+..|.++
T Consensus       139 ---p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a  170 (176)
T 2r5s_A          139 ---LGAQDGEVKKTFMDILSALGQGNAIASKYRRQ  170 (176)
T ss_dssp             ---TTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             ---cccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence               221 12334456666666 7788888888743

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=97.47  E-value=7.9e-05  Score=88.66  Aligned_cols=54  Identities=17%  Similarity=0.346  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeE-EEEEeeccCCCCceEEEcCEEEEccC
Q psy14927        948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNI-TVTIENVKDPTKKEELSCDALLVCVG 1007 (1074)
Q Consensus       948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~-~v~~~~~~~~g~~~~i~~D~vi~a~G 1007 (1074)
                      ..+.+.+.+.+++.|++|++++.|++|..+++++ .|++.+      ++++.+|.||.+++
T Consensus       221 ~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~------g~~~~ad~VV~~a~  275 (501)
T 4dgk_A          221 GALVQGMIKLFQDLGGEVVLNARVSHMETTGNKIEAVHLED------GRRFLTQAVASNAD  275 (501)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETT------SCEEECSCEEECCC
T ss_pred             cchHHHHHHHHHHhCCceeeecceeEEEeeCCeEEEEEecC------CcEEEcCEEEECCC
Confidence            4567788888999999999999999999877764 366554      56899999998764

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=97.44  E-value=0.00013  Score=79.98  Aligned_cols=103  Identities=16%  Similarity=0.116  Sum_probs=62.1

Q ss_pred             hhhhhhccccchHHHHHHHhh------hhhhhccccccccchh--------------------hhhh-----h-hhHHHh
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT------KLFTQAGDKGVKLNLE--------------------TMMG-----T-KSAAVK  842 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~------~l~e~~~~~g~~~~~~--------------------~~~~-----~-~~~~~~  842 (1074)
                      .+|+||||||+|+++|+.|++      +++|+.+..++.....                    .++.     . ......
T Consensus        40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  119 (284)
T 1rp0_A           40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAA  119 (284)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCHH
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEecCHH
Confidence            349999999999999999987      5788876554321100                    0000     0 000112


Q ss_pred             hhhhhHHHHhhh-CCeEEEee-eEEEec--CCeE-EEEeC---------C---CCeeEEEcCeEEEccCCCC
Q psy14927        843 ALTGGIAHLFKS-NKVTQLNG-HGKITG--PNTV-TVIKS---------D---GSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       843 ~l~~~~~~~l~~-~gV~~~~g-~v~~id--~~~~-~v~~~---------~---G~~~~i~~d~lIIATG~~p  897 (1074)
                      .+...+.+.+.+ .||+++.+ +|+.+.  .+.+ .|.+.         +   |+..++.+|.||+|||..+
T Consensus       120 ~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s  191 (284)
T 1rp0_A          120 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDG  191 (284)
T ss_dssp             HHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSS
T ss_pred             HHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCch
Confidence            233334444544 69999998 577664  3322 23321         2   3336799999999999865

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=97.43  E-value=0.0026  Score=74.15  Aligned_cols=126  Identities=14%  Similarity=0.108  Sum_probs=82.0

Q ss_pred             hhcCCHHHHHHHHHHcCcccc--------hhhhHh---------h--hcHHHHHHHhhc-----CCChHHHHHHHHHH--
Q psy14927          7 MKNGDIDRAIRMFEKAETHQQ--------HVPRML---------L--ENTDKLEKYIIQ-----SKDPVLLKWWAQYI--   60 (1074)
Q Consensus         7 ~~~g~~~eA~~~Ye~~~~~~~--------~~~~~~---------~--~~~~~~~~~~~~-----~~~~~l~~~~a~~~--   60 (1074)
                      ..+|++++|..+|+++.....        ..+..+         +  ++++++.++..+     ++++..+..++...  
T Consensus       105 ~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~  184 (472)
T 4g1t_A          105 YHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYR  184 (472)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            467999999999998754321        223322         1  245555555544     57788888887664  


Q ss_pred             -HhccCHHHHHHHHHHhhChh-----h-------hhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhcCChH
Q psy14927         61 -ESTEDMDLAMKYYEEARDYL-----S-------MVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQFD  122 (1074)
Q Consensus        61 -e~~~~~~~A~~~y~~a~d~~-----~-------~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~g~~~  122 (1074)
                       ...++.++|.++|.++=...     .       ..+++...+++++|.+..+     .+....+...+|..|...|+++
T Consensus       185 l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~  264 (472)
T 4g1t_A          185 LDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPD  264 (472)
T ss_dssp             HHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHH
T ss_pred             hcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchH
Confidence             44577788888888763321     1       1122345677888887765     3467778889999999999999


Q ss_pred             HHHHHHHHhC
Q psy14927        123 EAIHFYSVAG  132 (1074)
Q Consensus       123 ~Ai~~y~~a~  132 (1074)
                      +|+++|.++-
T Consensus       265 ~A~~~~~~al  274 (472)
T 4g1t_A          265 KAIELLKKAL  274 (472)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=97.41  E-value=0.00044  Score=80.04  Aligned_cols=59  Identities=20%  Similarity=0.286  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927        949 EVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus       949 ~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
                      .+...+.+.+++.||+++.+++|+++..++++..+.+...  +|+..++.+|.||.|+|..
T Consensus       107 ~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~--~g~~~~~~a~~vV~A~G~~  165 (421)
T 3nix_A          107 NFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDI--NGNKREIEARFIIDASGYG  165 (421)
T ss_dssp             HHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEET--TSCEEEEEEEEEEECCGGG
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcC--CCCEEEEEcCEEEECCCCc
Confidence            3455666777778999999999999998777765665542  2544589999999999965

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=97.40  E-value=0.011  Score=59.64  Aligned_cols=158  Identities=11%  Similarity=0.055  Sum_probs=90.3

Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHccCChhHHHHHHHHh
Q psy14927        105 TAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLETIEPDKAVLLYHKA  184 (1074)
Q Consensus       105 ~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~~~~~A~~ly~ka  184 (1074)
                      ..+...+|..+...|++++|+++|.      +|++++++.+........        +...            +.+|...
T Consensus        26 ~~~~~~l~~~~~~~g~~~~A~~~~~------~al~~~~~~~~~~~~~~~--------~~~l------------~~~~~~~   79 (203)
T 3gw4_A           26 SGARFMLGYVYAFMDRFDEARASFQ------ALQQQAQKSGDHTAEHRA--------LHQV------------GMVERMA   79 (203)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHH------HHHHHHHTTCCHHHHHHH--------HHHH------------HHHHHHT
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHH------HHHHHHHHcCCcHHHHHH--------HHHH------------HHHHHHc
Confidence            3467789999999999999999864      567777776543322211        1123            3344444


Q ss_pred             CChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHh-cCCCCCChhHHHHHHHHHH
Q psy14927        185 GALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQ-SSDWKSQPELLKSIISFYS  263 (1074)
Q Consensus       185 G~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~-~~~~~~~~~~~~~i~~~Y~  263 (1074)
                      |++.+|++.+.+             |++..-+.++...        .....+...+..+. ..+++.-...+...+....
T Consensus        80 g~~~~A~~~~~~-------------al~~~~~~~~~~~--------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  138 (203)
T 3gw4_A           80 GNWDAARRCFLE-------------ERELLASLPEDPL--------AASANAYEVATVALHFGDLAGARQEYEKSLVYAQ  138 (203)
T ss_dssp             TCHHHHHHHHHH-------------HHHHHHHSCCCHH--------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH-------------HHHHHHHcCccHH--------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            444444444433             1222222331100        00111222222221 1122222244455555566


Q ss_pred             ccCCHHHHHHHHHHHHhHHHHhhcCHHHHHHHHHHHHHHHHhcCCCc
Q psy14927        264 KGKAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSM  310 (1074)
Q Consensus       264 k~~~~~~aa~~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~  310 (1074)
                      ..+.....+..+...+... ...|+|++|...+.++++...+.+...
T Consensus       139 ~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~  184 (203)
T 3gw4_A          139 QADDQVAIACAFRGLGDLA-QQEKNLLEAQQHWLRARDIFAELEDSE  184 (203)
T ss_dssp             HTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             hccchHHHHHHHHHHHHHH-HHCcCHHHHHHHHHHHHHHHHHcCCHH
Confidence            6666666677777888887 889999999999999999998877543

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=97.40  E-value=0.00016  Score=87.19  Aligned_cols=103  Identities=17%  Similarity=0.129  Sum_probs=65.9

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhcc-ccccc---cc---------------hhhhhhh-------------
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAG-DKGVK---LN---------------LETMMGT-------------  836 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~-~~g~~---~~---------------~~~~~~~-------------  836 (1074)
                      ..+|+|||||+||++||+.+++     +++++.. ..|..   +.               +......             
T Consensus        21 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f~~l~  100 (641)
T 3cp8_A           21 MYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQFRMLN  100 (641)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEEEEEC
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCchhhcc
Confidence            3469999999999999999999     6777653 12211   00               0000000             


Q ss_pred             --h-h--------HHHhhhhhhHHHHhhh-CCeEEEeeeEEEec--CCeEE-EEeCCCCeeEEEcCeEEEccCCCCC
Q psy14927        837 --K-S--------AAVKALTGGIAHLFKS-NKVTQLNGHGKITG--PNTVT-VIKSDGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       837 --~-~--------~~~~~l~~~~~~~l~~-~gV~~~~g~v~~id--~~~~~-v~~~~G~~~~i~~d~lIIATG~~p~  898 (1074)
                        . .        .....+...+.+.+.+ .||+++.+.|+.+.  .+.+. |.+.+|  .++.+|.||+|||+.+.
T Consensus       101 ~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~~~V~~L~~d~g~V~GV~t~~G--~~i~Ad~VVLATG~~s~  175 (641)
T 3cp8_A          101 RSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQDTVIGVSANSGKFSSVTVRSG--RAIQAKAAILACGTFLN  175 (641)
T ss_dssp             SSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTS--CEEEEEEEEECCTTCBT
T ss_pred             cccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEeeEEEEEEecCCEEEEEEECCC--cEEEeCEEEECcCCCCC
Confidence              0 0        0001233345566666 49999888888754  45554 777787  68999999999999864

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=97.35  E-value=0.0047  Score=62.40  Aligned_cols=90  Identities=13%  Similarity=0.055  Sum_probs=58.3

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHhhC--------------hhhhhhHhhccCCHHHHHHHHHh-------cC-Ch--
Q psy14927         50 PVLLKWWAQYIESTEDMDLAMKYYEEARD--------------YLSMVRVLCFLQDFSRAAELANA-------SG-DT--  105 (1074)
Q Consensus        50 ~~l~~~~a~~~e~~~~~~~A~~~y~~a~d--------------~~~~vr~l~~~~~~~~a~~i~~~-------~~-~~--  105 (1074)
                      ...+..+|..+...|++++|.++|.++-+              +..+..++...|++++|.+..++       .+ +.  
T Consensus        26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  105 (203)
T 3gw4_A           26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA  105 (203)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence            55677778888888888888888877654              12333445667777666655442       23 22  


Q ss_pred             --HHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhC
Q psy14927        106 --AAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQA  145 (1074)
Q Consensus       106 --~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~  145 (1074)
                        .+...+|..+...|++++|+++|.+      |+++++..+
T Consensus       106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~------al~~~~~~~  141 (203)
T 3gw4_A          106 ASANAYEVATVALHFGDLAGARQEYEK------SLVYAQQAD  141 (203)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHH------HHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHH------HHHHHHhcc
Confidence              2355777888888888888877543      455555543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=97.33  E-value=0.0029  Score=69.65  Aligned_cols=123  Identities=12%  Similarity=0.159  Sum_probs=75.9

Q ss_pred             hcCCH-------HHHHHHHHHcCc-ccchhhhHh---------hhcHHHHHHHhhc-----CCChH-HHHHHHHHHHhcc
Q psy14927          8 KNGDI-------DRAIRMFEKAET-HQQHVPRML---------LENTDKLEKYIIQ-----SKDPV-LLKWWAQYIESTE   64 (1074)
Q Consensus         8 ~~g~~-------~eA~~~Ye~~~~-~~~~~~~~~---------~~~~~~~~~~~~~-----~~~~~-l~~~~a~~~e~~~   64 (1074)
                      +.|++       ++|...|+++-. ....-+.++         .++++.+.....+     +.++. +|..|+.++...|
T Consensus        69 ~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  148 (308)
T 2ond_A           69 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAE  148 (308)
T ss_dssp             HTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHH
T ss_pred             hccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhc
Confidence            45775       899999999876 332222221         1345555544443     33454 7777788777788


Q ss_pred             CHHHHHHHHHHhhChh--------hhhhH-hhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhcCChHHHHHHHHH
Q psy14927         65 DMDLAMKYYEEARDYL--------SMVRV-LCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQFDEAIHFYSV  130 (1074)
Q Consensus        65 ~~~~A~~~y~~a~d~~--------~~vr~-l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~  130 (1074)
                      ++++|.+.|.++-...        ..+.+ +..+|++++|.++.+     .+.+......++.++.+.|++++|+..|.+
T Consensus       149 ~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~  228 (308)
T 2ond_A          149 GIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFER  228 (308)
T ss_dssp             CHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            8888888877765431        11122 123677777776654     245666667777777777777777777653

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=97.33  E-value=0.087  Score=58.96  Aligned_cols=88  Identities=17%  Similarity=0.066  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHhhCh-------------hhhhhHhhccCCHHHHHHHHHh-------cCChH----H
Q psy14927         52 LLKWWAQYIESTEDMDLAMKYYEEARDY-------------LSMVRVLCFLQDFSRAAELANA-------SGDTA----A  107 (1074)
Q Consensus        52 l~~~~a~~~e~~~~~~~A~~~y~~a~d~-------------~~~vr~l~~~~~~~~a~~i~~~-------~~~~~----~  107 (1074)
                      ++...|..+...|++++|..++.++=+.             ..+..++...|++++|.+..++       .++..    +
T Consensus        16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   95 (373)
T 1hz4_A           16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS   95 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            4455688888899999999999885221             1223446678999888876653       23332    2


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhC
Q psy14927        108 AYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQA  145 (1074)
Q Consensus       108 ~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~  145 (1074)
                      ...+|..+..+|++++|+++|.      +|++++.+.+
T Consensus        96 ~~~la~~~~~~G~~~~A~~~~~------~al~~~~~~~  127 (373)
T 1hz4_A           96 LIQQSEILFAQGFLQTAWETQE------KAFQLINEQH  127 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHH------HHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHH------HHHHHHHHhc
Confidence            5678899999999999999875      4666666653

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.32  E-value=0.00026  Score=81.07  Aligned_cols=108  Identities=12%  Similarity=0.098  Sum_probs=71.7

Q ss_pred             hhhccccccccccCCceEEeccchh--h----c---cHHHH---hccccccccccccccccccccccCCcceEEEEeccC
Q psy14927        372 YLEMKRNQSFRSSNTDIILPVEKWT--L----L---SLARV---LEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKL  439 (1074)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~--~----~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (1074)
                      .+ +..|+.+||+..+||..||...  +    +   ...|+   +.++......+.+..+|..+...             
T Consensus       257 ~g-i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~a~~~g~~~a~~i~g~~~~~~~~~~p~~~~~~-------------  322 (384)
T 2v3a_A          257 RG-IVVDRSLRTSHANIYALGDCAEVDGLNLLYVMPLMACARALAQTLAGNPSQVAYGPMPVTVKTP-------------  322 (384)
T ss_dssp             SS-EEECTTCBCSSTTEEECGGGEEETTBCCCSHHHHHHHHHHHHHHHTTCCCCCCCCCCCEEECCT-------------
T ss_pred             CC-EEECCCCCCCCCCEEEeeeeeeECCCCcchHHHHHHHHHHHHHHhcCCCccCCCCCcceEEEEC-------------
Confidence            35 8889999999999999999842  2    1   13343   44444332233334455443221             


Q ss_pred             CCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHH
Q psy14927        440 TDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEA  506 (1074)
Q Consensus       440 ~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~  506 (1074)
                                  +.++.+...++...+++...+++.||+|++++ ++|+|+|+|++|++|+|+++..
T Consensus       323 ------------~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~-~~~~i~G~~~~g~~a~e~~~~~  376 (384)
T 2v3a_A          323 ------------ACPLVVSPPPRGMDGQWLVEGSGTDLKVLCRD-TAGRVIGYALTGAAVNEKLALN  376 (384)
T ss_dssp             ------------TSCEEEECCCTTCCCEEEEEEETTEEEEEEEC-TTSCEEEEEEEGGGGGGHHHHH
T ss_pred             ------------CeeEEEecCCCCCCceEEEEecCCcEEEEEEc-cCCEEEEEEEECcchHHHHHHH
Confidence                        23455554455555566666778899999887 6799999999999999988744

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=97.31  E-value=0.00021  Score=82.23  Aligned_cols=99  Identities=16%  Similarity=0.203  Sum_probs=62.3

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhcccc----ccccch-hhhhhhhh--------------------H-----
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDK----GVKLNL-ETMMGTKS--------------------A-----  839 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~----g~~~~~-~~~~~~~~--------------------~-----  839 (1074)
                      .+|+||||||+|+++|+.|++     +++|+.+..    +..+.+ +.......                    .     
T Consensus         6 ~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~~   85 (397)
T 2vou_A            6 DRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTGER   85 (397)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTCCE
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEecCCCCc
Confidence            359999999999999999999     788876542    111110 00000000                    0     


Q ss_pred             -----------HHhhhhhhHHHHhhhCCeEEEee-eEEEe--cCCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        840 -----------AVKALTGGIAHLFKSNKVTQLNG-HGKIT--GPNTVTVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       840 -----------~~~~l~~~~~~~l~~~gV~~~~g-~v~~i--d~~~~~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                                 ....+...+.+.+  .|++++.+ +|+.+  +.+.+.|++.+|  .++.+|.||.|+|...
T Consensus        86 ~~~~~~~~~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g--~~~~ad~vV~AdG~~S  153 (397)
T 2vou_A           86 VGSVPADWRFTSYDSIYGGLYELF--GPERYHTSKCLVGLSQDSETVQMRFSDG--TKAEANWVIGADGGAS  153 (397)
T ss_dssp             EEEEECCCCEEEHHHHHHHHHHHH--CSTTEETTCCEEEEEECSSCEEEEETTS--CEEEESEEEECCCTTC
T ss_pred             cccccCcccccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecCCEEEEEECCC--CEEECCEEEECCCcch
Confidence                       0001111122222  38889988 57766  355678888888  5799999999999975

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=97.31  E-value=0.00023  Score=81.78  Aligned_cols=102  Identities=12%  Similarity=-0.008  Sum_probs=64.6

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhcccc-------ccccchh------------hhh-----------------
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDK-------GVKLNLE------------TMM-----------------  834 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~-------g~~~~~~------------~~~-----------------  834 (1074)
                      +|+||||||+|+++|+.|++     +++|+.+..       ++.+...            .+.                 
T Consensus         4 dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~   83 (394)
T 1k0i_A            4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQR   83 (394)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTEE
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEECCce
Confidence            49999999999999999998     778875531       1111000            000                 


Q ss_pred             ---hhhh---H------HHhhhhhhHHHHhhhCCeEEEee-eEEEecC---CeEEEEe-CCCCeeEEEcCeEEEccCCCC
Q psy14927        835 ---GTKS---A------AVKALTGGIAHLFKSNKVTQLNG-HGKITGP---NTVTVIK-SDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       835 ---~~~~---~------~~~~l~~~~~~~l~~~gV~~~~g-~v~~id~---~~~~v~~-~~G~~~~i~~d~lIIATG~~p  897 (1074)
                         ....   .      ....+...+.+.+.+.|++++.+ +|+.+..   +.+.|++ .+|...++.+|.||.|+|...
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~AdG~~S  163 (394)
T 1k0i_A           84 RRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHG  163 (394)
T ss_dssp             EEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCTTC
T ss_pred             EEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEECCCCCc
Confidence               0000   0      00123334555566679999999 5776643   3466766 677333799999999999875

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=97.30  E-value=0.0054  Score=62.75  Aligned_cols=83  Identities=13%  Similarity=0.070  Sum_probs=59.1

Q ss_pred             ChHHHHHHHHHHHhccCHHHHHHHHHHhhCh--------hhhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHHHH
Q psy14927         49 DPVLLKWWAQYIESTEDMDLAMKYYEEARDY--------LSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLARQY  115 (1074)
Q Consensus        49 ~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~--------~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~~~  115 (1074)
                      ++..+...|..+...|++++|.++|.++-..        ..+..++...|++++|.+..+.     +.+......+|..|
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~   86 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL   86 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            4567777788888888888888888764322        2344557777888887776652     34666777888888


Q ss_pred             Hhc-CChHHHHHHHHHh
Q psy14927        116 ENS-GQFDEAIHFYSVA  131 (1074)
Q Consensus       116 ~~~-g~~~~Ai~~y~~a  131 (1074)
                      ... |++++|+++|.++
T Consensus        87 ~~~~~~~~~A~~~~~~~  103 (225)
T 2vq2_A           87 CGRLNRPAESMAYFDKA  103 (225)
T ss_dssp             HTTTCCHHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHHH
Confidence            888 8888888877654

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=97.30  E-value=0.00032  Score=84.89  Aligned_cols=54  Identities=15%  Similarity=0.020  Sum_probs=36.5

Q ss_pred             hhhhHHHHhhhCCeEEEee-eEEEec--C-Ce---EEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        844 LTGGIAHLFKSNKVTQLNG-HGKITG--P-NT---VTVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       844 l~~~~~~~l~~~gV~~~~g-~v~~id--~-~~---~~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                      +...+.+.+.+.||+++++ +|+.+.  . ..   +.+...+|+..++.+|.||+|||...
T Consensus       257 l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~  317 (571)
T 1y0p_A          257 VVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFA  317 (571)
T ss_dssp             HHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred             HHHHHHHHHHhcCCEEEeCCEeeEeEEcCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCcc
Confidence            3344566677789999999 466653  2 32   23333366445799999999999854

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=97.30  E-value=0.0034  Score=65.05  Aligned_cols=85  Identities=22%  Similarity=0.202  Sum_probs=48.7

Q ss_pred             ChHHHHHHHHHHHhccCHHHHHHHHHHhh---ChhhhhhH---hhccC----CHHHHHHHHH---hcCChHHHHHHHHHH
Q psy14927         49 DPVLLKWWAQYIESTEDMDLAMKYYEEAR---DYLSMVRV---LCFLQ----DFSRAAELAN---ASGDTAAAYHLARQY  115 (1074)
Q Consensus        49 ~~~l~~~~a~~~e~~~~~~~A~~~y~~a~---d~~~~vr~---l~~~~----~~~~a~~i~~---~~~~~~~~~~la~~~  115 (1074)
                      ++.-+..+|..+...+++++|.++|.++-   +......+   |.. +    ++++|.+..+   +.++..+.+.+|..|
T Consensus        17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y   95 (212)
T 3rjv_A           17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKSGEIVLARVL   95 (212)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            35555566666666666666666666642   22222222   333 4    5666666544   445666666666666


Q ss_pred             Hh----cCChHHHHHHHHHhCCh
Q psy14927        116 EN----SGQFDEAIHFYSVAGSC  134 (1074)
Q Consensus       116 ~~----~g~~~~Ai~~y~~a~~~  134 (1074)
                      ..    .+|+++|+++|.++-..
T Consensus        96 ~~g~g~~~d~~~A~~~~~~A~~~  118 (212)
T 3rjv_A           96 VNRQAGATDVAHAITLLQDAARD  118 (212)
T ss_dssp             TCGGGSSCCHHHHHHHHHHHTSS
T ss_pred             HcCCCCccCHHHHHHHHHHHHHc
Confidence            65    66666666666665544

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=97.29  E-value=0.0015  Score=68.19  Aligned_cols=125  Identities=15%  Similarity=0.199  Sum_probs=68.9

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchh-------hhHhh--hcHHHHHHHhhc-----CCChHHHHHHHHHHHhccCHHHHHH
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHV-------PRMLL--ENTDKLEKYIIQ-----SKDPVLLKWWAQYIESTEDMDLAMK   71 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~-------~~~~~--~~~~~~~~~~~~-----~~~~~l~~~~a~~~e~~~~~~~A~~   71 (1074)
                      +...|++++|+..|+++-..+..-       ..++.  ++++.+..+..+     +.++..+..+|..+...|++++|.+
T Consensus        67 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~  146 (243)
T 2q7f_A           67 LSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALP  146 (243)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence            456788888888888765443221       11121  345444444433     3455566666666666666666666


Q ss_pred             HHHHhhCh--------hhhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHHHHHhcCChHHHHHHHHH
Q psy14927         72 YYEEARDY--------LSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLARQYENSGQFDEAIHFYSV  130 (1074)
Q Consensus        72 ~y~~a~d~--------~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~~~~~~g~~~~Ai~~y~~  130 (1074)
                      +|.++-..        ..+..++...|++++|.+..++     +.+......+|..|...|++++|+++|.+
T Consensus       147 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  218 (243)
T 2q7f_A          147 YLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDK  218 (243)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred             HHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            66654221        2234445556666666555442     23445555666666666666666665544

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=97.28  E-value=0.0011  Score=79.09  Aligned_cols=60  Identities=13%  Similarity=0.152  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEecCCeE-EEEEeeccCCCCceEEEcCEEEEccCCcc
Q psy14927        949 EVAKQFQRILGKQGMQFKLGTKVTGASKSGDNI-TVTIENVKDPTKKEELSCDALLVCVGRRP 1010 (1074)
Q Consensus       949 ~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~-~v~~~~~~~~g~~~~i~~D~vi~a~G~~p 1010 (1074)
                      .+...+.+.+.+.||+++.+++|+++..+++.+ .|.+.+.  +|+..++.+|.||.|+|...
T Consensus       112 ~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~--dG~~~~i~ad~VI~AdG~~S  172 (512)
T 3e1t_A          112 RFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNT--EGVELMAHARFIVDASGNRT  172 (512)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECS--SSCEEEEEEEEEEECCCTTC
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeC--CCCEEEEEcCEEEECCCcch
Confidence            355667777788999999999999999876654 3555542  24446899999999999753

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=97.28  E-value=0.00022  Score=82.02  Aligned_cols=101  Identities=15%  Similarity=0.082  Sum_probs=65.6

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccccc-----cccch------------hhhhh--------------h--
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKG-----VKLNL------------ETMMG--------------T--  836 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g-----~~~~~------------~~~~~--------------~--  836 (1074)
                      .+|+||||||+|+++|+.|++     +++|+.+...     ..+..            ..+..              +  
T Consensus         7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g~~   86 (399)
T 2x3n_A            7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHDGEL   86 (399)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEETTEE
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCCCCE
Confidence            459999999999999999999     6788754331     00000            00000              0  


Q ss_pred             ----------hh-----HHHhhhhhhHHHHhhhC-CeEEEee-eEEEec--CCeE--EEEeCCCCeeEEEcCeEEEccCC
Q psy14927        837 ----------KS-----AAVKALTGGIAHLFKSN-KVTQLNG-HGKITG--PNTV--TVIKSDGSTEEVKTKNILIATGS  895 (1074)
Q Consensus       837 ----------~~-----~~~~~l~~~~~~~l~~~-gV~~~~g-~v~~id--~~~~--~v~~~~G~~~~i~~d~lIIATG~  895 (1074)
                                ..     -....+...+.+.+.+. ||+++.+ +|+.++  .+.+  .|++.+|  .++.+|.||.|+|.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g--~~~~ad~vV~AdG~  164 (399)
T 2x3n_A           87 LRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDG--RVLRPRVVVGADGI  164 (399)
T ss_dssp             EEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTS--CEEEEEEEEECCCT
T ss_pred             EEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCC--CEEECCEEEECCCC
Confidence                      00     00123334455666666 9999998 577664  3455  7778888  58999999999998


Q ss_pred             CC
Q psy14927        896 EV  897 (1074)
Q Consensus       896 ~p  897 (1074)
                      ..
T Consensus       165 ~s  166 (399)
T 2x3n_A          165 AS  166 (399)
T ss_dssp             TC
T ss_pred             Ch
Confidence            75

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=97.28  E-value=0.0018  Score=59.94  Aligned_cols=106  Identities=26%  Similarity=0.404  Sum_probs=81.0

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhC-------
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARD-------   78 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d-------   78 (1074)
                      +...|++++|..+|+++-..                    .+.++..+..+|..+...|++++|.++|.++-.       
T Consensus        11 ~~~~~~~~~A~~~~~~~~~~--------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~   70 (136)
T 2fo7_A           11 YYKQGDYDEAIEYYQKALEL--------------------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE   70 (136)
T ss_dssp             HHHHTCHHHHHHHHHHHHHH--------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHcCcHHHHHHHHHHHHHc--------------------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchH
Confidence            34567888888888776421                    134466777889989999999999999988643       


Q ss_pred             -hhhhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927         79 -YLSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus        79 -~~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                       +..+..++...|++++|.+..+.     +.+......+|..+...|++++|+++|.++
T Consensus        71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  129 (136)
T 2fo7_A           71 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA  129 (136)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence             23456668889999999887763     346677889999999999999999988654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=97.28  E-value=0.0013  Score=62.21  Aligned_cols=63  Identities=13%  Similarity=0.067  Sum_probs=44.6

Q ss_pred             CChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHH
Q psy14927         48 KDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHF  127 (1074)
Q Consensus        48 ~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~  127 (1074)
                      +++.+|...|..+...|++++|+++|.++=..                     ++.+..+.+.+|..|...|++++|++.
T Consensus        45 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---------------------~p~~~~a~~~lg~~~~~~~~~~~A~~~  103 (126)
T 4gco_A           45 ENAILYSNRAACLTKLMEFQRALDDCDTCIRL---------------------DSKFIKGYIRKAACLVAMREWSKAQRA  103 (126)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh---------------------hhhhhHHHHHHHHHHHHCCCHHHHHHH
Confidence            34556666666666666666666665543111                     456778899999999999999999998


Q ss_pred             HHHh
Q psy14927        128 YSVA  131 (1074)
Q Consensus       128 y~~a  131 (1074)
                      |.++
T Consensus       104 ~~~a  107 (126)
T 4gco_A          104 YEDA  107 (126)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=97.27  E-value=0.00031  Score=84.86  Aligned_cols=53  Identities=11%  Similarity=0.048  Sum_probs=36.1

Q ss_pred             hhhHHHHhhhCCeEEEee-eEEEec--C-CeE-EEEe--CCCCeeEEEcCeEEEccCCCC
Q psy14927        845 TGGIAHLFKSNKVTQLNG-HGKITG--P-NTV-TVIK--SDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       845 ~~~~~~~l~~~gV~~~~g-~v~~id--~-~~~-~v~~--~~G~~~~i~~d~lIIATG~~p  897 (1074)
                      ...+.+.+.+.||+++++ .|+.+.  . +.+ .|++  .+|+..++.+|.||+|||+..
T Consensus       253 ~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s  312 (566)
T 1qo8_A          253 IDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYG  312 (566)
T ss_dssp             HHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCT
T ss_pred             HHHHHHHHHhcCCEEEeCCEEEEEEECCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCcc
Confidence            344566677789999999 466653  2 322 2333  467444799999999999865

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=97.24  E-value=0.00017  Score=86.28  Aligned_cols=45  Identities=18%  Similarity=0.212  Sum_probs=35.0

Q ss_pred             HHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927        958 LGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus       958 l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
                      .+..|+++++++.|++|..+++++.|.+.+      ++++.+|.||++++.
T Consensus       222 ~~~lg~~i~~~~~V~~i~~~~~~v~v~~~~------g~~~~ad~VI~a~p~  266 (520)
T 1s3e_A          222 MDLLGDRVKLERPVIYIDQTRENVLVETLN------HEMYEAKYVISAIPP  266 (520)
T ss_dssp             HHHHGGGEESSCCEEEEECSSSSEEEEETT------SCEEEESEEEECSCG
T ss_pred             HHHcCCcEEcCCeeEEEEECCCeEEEEECC------CeEEEeCEEEECCCH
Confidence            344478999999999998776666665443      457999999999875

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.22  E-value=0.012  Score=67.65  Aligned_cols=29  Identities=17%  Similarity=0.023  Sum_probs=21.4

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHhhC
Q psy14927         50 PVLLKWWAQYIESTEDMDLAMKYYEEARD   78 (1074)
Q Consensus        50 ~~l~~~~a~~~e~~~~~~~A~~~y~~a~d   78 (1074)
                      |.-...-|+-+...|+|++|.+.|.++-+
T Consensus         4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~   32 (434)
T 4b4t_Q            4 PGSKLEEARRLVNEKQYNEAEQVYLSLLD   32 (434)
T ss_dssp             TTHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            44445557778889999999999987543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=97.21  E-value=0.0037  Score=68.14  Aligned_cols=150  Identities=9%  Similarity=0.082  Sum_probs=89.4

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhC-------
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARD-------   78 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d-------   78 (1074)
                      +-..|++++|..+|+++.......+..        ..+      ...+...+.+....+++++|.++|.++=+       
T Consensus        85 ~~~~~~y~~a~~~~~~~l~~~~~~~~~--------~~~------~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~  150 (293)
T 3u3w_A           85 LCKQKRYKEIYNKVWNELKKEEYHPEF--------QQF------LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID  150 (293)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCCCCHHH--------HHH------HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSC
T ss_pred             HHHHhhHHHHHHHHHHHhccccCChHH--------HHH------HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccccc
Confidence            345677788888777765432111110        000      01122346667777788888888877633       


Q ss_pred             -------hhhhhhHhhccCCHHHHHHHHHhc--------CCh----HHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHH
Q psy14927         79 -------YLSMVRVLCFLQDFSRAAELANAS--------GDT----AAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVR  139 (1074)
Q Consensus        79 -------~~~~vr~l~~~~~~~~a~~i~~~~--------~~~----~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~  139 (1074)
                             +.++..++..+|++++|.+..++.        .+.    ...+.+|..|.++|++++|+++|.      +|++
T Consensus       151 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~------~al~  224 (293)
T 3u3w_A          151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVN------KAIE  224 (293)
T ss_dssp             TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH------HHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHH------HHHH
Confidence                   234444577778888777765521        222    256799999999999999999965      5688


Q ss_pred             HHHHhCchHHHHHHhhhcCchhHHHHHHHHcc-CC-hhHHHHHHHH
Q psy14927        140 LCKEQALDDQLWNLALSAGPSEQIEAATYLET-IE-PDKAVLLYHK  183 (1074)
Q Consensus       140 la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~-~~-~~~A~~ly~k  183 (1074)
                      ++++.+.....        ...+...|..+.. ++ +++|...|.+
T Consensus       225 ~~~~~~~~~~~--------~~~~~~lg~~~~~~g~~~~~A~~~~~~  262 (293)
T 3u3w_A          225 ISCRINSMALI--------GQLYYQRGECLRKLEYEEAEIEDAYKK  262 (293)
T ss_dssp             HHHHTTBCTTH--------HHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHcCcHHHH--------HHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence            88776422111        1223345555554 53 4777776653

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.20  E-value=0.0075  Score=70.51  Aligned_cols=47  Identities=15%  Similarity=0.020  Sum_probs=26.9

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHh---hcCChHHHhhHHHHHHHH
Q psy14927        288 NYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEID---EFGNYEKGLGALNEAKRC  346 (1074)
Q Consensus       288 ~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~  346 (1074)
                      |+.+|...+..|.     .+.  +.     -+..+..+|..   .-.|+.+|+..|.+++..
T Consensus       302 d~~~A~~~~~~Aa-----~g~--~~-----A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  351 (452)
T 3e4b_A          302 DAKAAEAHFEKAV-----GRE--VA-----ADYYLGQIYRRGYLGKVYPQKALDHLLTAARN  351 (452)
T ss_dssp             CHHHHHHHHHTTT-----TTC--HH-----HHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHh-----CCC--HH-----HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence            7777777666655     121  11     11222334433   124899999999998873

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.19  E-value=0.0013  Score=71.98  Aligned_cols=140  Identities=14%  Similarity=0.054  Sum_probs=94.2

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhh----
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLS----   81 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~----   81 (1074)
                      +.+.|++++|+.+|+++-..+                    ++++..+..+|..+...|++++|..+|.++-....    
T Consensus       127 ~~~~g~~~~A~~~~~~al~~~--------------------P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~  186 (287)
T 3qou_A          127 LMQESNYTDALPLLXDAWQLS--------------------NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRY  186 (287)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHT--------------------TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHhC--------------------CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHH
Confidence            445666777777666654322                    56688999999999999999999999998743211    


Q ss_pred             ----hhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHH
Q psy14927         82 ----MVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWN  152 (1074)
Q Consensus        82 ----~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~  152 (1074)
                          ....+...++.+.|.+..+     .+++..+.+.+|..+...|++++|++.|.++-..                  
T Consensus       187 ~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~------------------  248 (287)
T 3qou_A          187 QGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX------------------  248 (287)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------
T ss_pred             HHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc------------------
Confidence                1111444555555544332     5678899999999999999999999887653211                  


Q ss_pred             Hhhhc-CchhHHHHHHHHcc-CChhHHHHHHHHh
Q psy14927        153 LALSA-GPSEQIEAATYLET-IEPDKAVLLYHKA  184 (1074)
Q Consensus       153 l~~~~-~~~~~~~~A~~~e~-~~~~~A~~ly~ka  184 (1074)
                       -+.. ........+..|+. ++.+.|+..|.++
T Consensus       249 -~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~a  281 (287)
T 3qou_A          249 -DLTAADGQTRXTFQEILAALGTGDALASXYRRQ  281 (287)
T ss_dssp             -CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             -ccccccchHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence             1221 12334456777777 7778888888753

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=97.19  E-value=0.0034  Score=71.71  Aligned_cols=105  Identities=12%  Similarity=0.183  Sum_probs=70.4

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccC-HHHHHHHHHHhhC------
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTED-MDLAMKYYEEARD------   78 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~-~~~A~~~y~~a~d------   78 (1074)
                      +...|++++|+.+|+++-..+                    +++...|...|..+...|+ +++|+++|.++=.      
T Consensus       107 ~~~~g~~~~Al~~~~~al~l~--------------------P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~  166 (382)
T 2h6f_A          107 LQRDERSERAFKLTRDAIELN--------------------AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY  166 (382)
T ss_dssp             HHHTCCCHHHHHHHHHHHHHC--------------------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHCCChHHHHHHHHHHHHhC--------------------ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH
Confidence            345677777777777665332                    4557778888888888886 8888888887533      


Q ss_pred             --hhhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhcCChHHHHHHHHH
Q psy14927         79 --YLSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQFDEAIHFYSV  130 (1074)
Q Consensus        79 --~~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~  130 (1074)
                        |.....+|..+|++++|....+     ++++..+.+.+|..+...|++++|+++|.+
T Consensus       167 ~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~  225 (382)
T 2h6f_A          167 QVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQ  225 (382)
T ss_dssp             HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence              2344455666777777766554     356667777777777777777777776543

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=97.18  E-value=0.0059  Score=63.21  Aligned_cols=49  Identities=22%  Similarity=0.175  Sum_probs=40.5

Q ss_pred             hhHhhccCCHHHHHHHHH---hcCChHHHHHHHHHHHhcC----ChHHHHHHHHHhC
Q psy14927         83 VRVLCFLQDFSRAAELAN---ASGDTAAAYHLARQYENSG----QFDEAIHFYSVAG  132 (1074)
Q Consensus        83 vr~l~~~~~~~~a~~i~~---~~~~~~~~~~la~~~~~~g----~~~~Ai~~y~~a~  132 (1074)
                      ..+|...+++++|.+..+   +.++..+.+.+|..|.. |    ++++|+++|.++-
T Consensus        25 g~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~   80 (212)
T 3rjv_A           25 ADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV   80 (212)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence            344666788888887766   56888999999999998 7    9999999999883

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.17  E-value=0.00026  Score=81.83  Aligned_cols=88  Identities=13%  Similarity=0.069  Sum_probs=64.6

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEecC
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITGP  869 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id~  869 (1074)
                      +|+|||||+.|+..|..+++     ++++..+......        .   ...+...+.+.+++.||+++.+ .++.++.
T Consensus       147 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~--------~---~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~  215 (408)
T 2gqw_A          147 RLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRA--------A---PATLADFVARYHAAQGVDLRFERSVTGSVD  215 (408)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTT--------S---CHHHHHHHHHHHHHTTCEEEESCCEEEEET
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccccc--------c---CHHHHHHHHHHHHHcCcEEEeCCEEEEEEC
Confidence            49999999999999999987     5555544332110        0   1223344667778899999999 6777773


Q ss_pred             CeEEEEeCCCCeeEEEcCeEEEccCCCCC
Q psy14927        870 NTVTVIKSDGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       870 ~~~~v~~~~G~~~~i~~d~lIIATG~~p~  898 (1074)
                       . .|++.+|  .++.+|.||+|||.+|.
T Consensus       216 -~-~v~~~~g--~~i~~D~vi~a~G~~p~  240 (408)
T 2gqw_A          216 -G-VVLLDDG--TRIAADMVVVGIGVLAN  240 (408)
T ss_dssp             -T-EEEETTS--CEEECSEEEECSCEEEC
T ss_pred             -C-EEEECCC--CEEEcCEEEECcCCCcc
Confidence             3 6777888  68999999999999874

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=97.15  E-value=0.0011  Score=80.13  Aligned_cols=59  Identities=19%  Similarity=0.200  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEec-CCeEEEEEeeccCCCCceEEEcCEEEEccCCcc
Q psy14927        949 EVAKQFQRILGKQGMQFKLGTKVTGASKS-GDNITVTIENVKDPTKKEELSCDALLVCVGRRP 1010 (1074)
Q Consensus       949 ~~~~~~~~~l~~~gV~i~~~~~v~~i~~~-~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p 1010 (1074)
                      .+...+.+.+.+.||+++.+++|+++..+ ++.+.|++.+   +|+..++.+|.||.|+|...
T Consensus       129 ~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~---~G~~~~i~AdlVV~AdG~~S  188 (591)
T 3i3l_A          129 EFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRR---GGESVTVESDFVIDAGGSGG  188 (591)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEE---TTEEEEEEESEEEECCGGGC
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEec---CCceEEEEcCEEEECCCCcc
Confidence            35566777778899999999999999864 4557777764   24447899999999999754

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=97.13  E-value=0.0021  Score=68.69  Aligned_cols=107  Identities=21%  Similarity=0.204  Sum_probs=71.5

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCC---hHHHHHHHHHHHhccCHHHHHHHHHHhhCh--
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKD---PVLLKWWAQYIESTEDMDLAMKYYEEARDY--   79 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~--   79 (1074)
                      .+...|++++|+..|+++-...                    +.+   +..+.++|..+...|++++|..+|.++=+.  
T Consensus        24 ~~~~~g~~~~A~~~~~~~l~~~--------------------p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p   83 (261)
T 3qky_A           24 EFYNQGKYDRAIEYFKAVFTYG--------------------RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQ   83 (261)
T ss_dssp             HHHHTTCHHHHHHHHHHHGGGC--------------------SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHhCCHHHHHHHHHHHHHhC--------------------CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC
Confidence            3556788888888888876433                    122   567777788888888888888888775432  


Q ss_pred             ---------hhhhhHhhc--------cCCHHHHHHHHHh-----cCChHHH-----------------HHHHHHHHhcCC
Q psy14927         80 ---------LSMVRVLCF--------LQDFSRAAELANA-----SGDTAAA-----------------YHLARQYENSGQ  120 (1074)
Q Consensus        80 ---------~~~vr~l~~--------~~~~~~a~~i~~~-----~~~~~~~-----------------~~la~~~~~~g~  120 (1074)
                               ..+..++..        +|++++|.+..++     +++..+.                 +.+|..|.+.|+
T Consensus        84 ~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~  163 (261)
T 3qky_A           84 IDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERREL  163 (261)
T ss_dssp             TCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence                     123344555        7777777766552     2332222                 778888889999


Q ss_pred             hHHHHHHHHHh
Q psy14927        121 FDEAIHFYSVA  131 (1074)
Q Consensus       121 ~~~Ai~~y~~a  131 (1074)
                      +++|+..|.++
T Consensus       164 ~~~A~~~~~~~  174 (261)
T 3qky_A          164 YEAAAVTYEAV  174 (261)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99888887653

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=97.13  E-value=0.014  Score=60.51  Aligned_cols=85  Identities=15%  Similarity=0.097  Sum_probs=69.5

Q ss_pred             CCChHHHHHHHHHHHhccCHHHHHHHHHHhhChh---------hhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHH
Q psy14927         47 SKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYL---------SMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLA  112 (1074)
Q Consensus        47 ~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~---------~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la  112 (1074)
                      ..+|..+...|..+...|++++|.++|.++=+..         .+..++..+|++++|.+..+.     +.+..+...+|
T Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   83 (228)
T 4i17_A            4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS   83 (228)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence            3568888999999999999999999999865433         355668889999999887663     45566788999


Q ss_pred             HHHHhcCChHHHHHHHHHh
Q psy14927        113 RQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus       113 ~~~~~~g~~~~Ai~~y~~a  131 (1074)
                      ..|..+|++++|++.|.++
T Consensus        84 ~~~~~~~~~~~A~~~~~~a  102 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEG  102 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHH
Confidence            9999999999999887654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=97.11  E-value=0.0065  Score=66.20  Aligned_cols=119  Identities=10%  Similarity=0.095  Sum_probs=75.6

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhh-------C
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEAR-------D   78 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~-------d   78 (1074)
                      +...|++++|+.+|+++-......+..    ..          ....+...|.++...|++++|.++|.++=       |
T Consensus        85 ~~~~~~y~~A~~~~~~~l~~~~~~~~~----~~----------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~  150 (293)
T 2qfc_A           85 LCKQKRYKEIYNKVWNELKKEEYHPEF----QQ----------FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID  150 (293)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCCCCHHH----HH----------HHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred             HHHhhhHHHHHHHHHHHhccccCChhH----HH----------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence            446677888887777654322111100    00          01122335777788888999998888763       2


Q ss_pred             h-------hhhhhHhhccCCHHHHHHHHHhc-------CC-h----HHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHH
Q psy14927         79 Y-------LSMVRVLCFLQDFSRAAELANAS-------GD-T----AAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVR  139 (1074)
Q Consensus        79 ~-------~~~vr~l~~~~~~~~a~~i~~~~-------~~-~----~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~  139 (1074)
                      .       .++..+|..+|++++|.+..++.       .+ .    .+.+.+|..|.++|++++|+++|.+      |++
T Consensus       151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~k------al~  224 (293)
T 2qfc_A          151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK------AIE  224 (293)
T ss_dssp             TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH------HHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHH------HHH
Confidence            2       23345577788888887776531       22 1    4677999999999999999999764      566


Q ss_pred             HHHHh
Q psy14927        140 LCKEQ  144 (1074)
Q Consensus       140 la~~~  144 (1074)
                      ++...
T Consensus       225 ~~~~~  229 (293)
T 2qfc_A          225 ISCRI  229 (293)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            66543

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.08  E-value=0.0004  Score=79.07  Aligned_cols=85  Identities=16%  Similarity=0.099  Sum_probs=63.9

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEecC
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITGP  869 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id~  869 (1074)
                      +|+|||||+.|+.+|..+++     ++++..+.... +            ..++...+.+.+++.||+++.+ +++.++.
T Consensus       145 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~------------~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~  211 (367)
T 1xhc_A          145 EAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG-L------------DEELSNMIKDMLEETGVKFFLNSELLEANE  211 (367)
T ss_dssp             EEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT-C------------CHHHHHHHHHHHHHTTEEEECSCCEEEECS
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc-C------------CHHHHHHHHHHHHHCCCEEEcCCEEEEEEe
Confidence            48999999999999999988     56655543322 1            1233444667788899999999 6888875


Q ss_pred             CeEEEEeCCCCeeEEEcCeEEEccCCCCC
Q psy14927        870 NTVTVIKSDGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       870 ~~~~v~~~~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      .  .+++++|  . +.+|.||+|||.+|.
T Consensus       212 ~--~v~~~~g--~-i~~D~vi~a~G~~p~  235 (367)
T 1xhc_A          212 E--GVLTNSG--F-IEGKVKICAIGIVPN  235 (367)
T ss_dssp             S--EEEETTE--E-EECSCEEEECCEEEC
T ss_pred             e--EEEECCC--E-EEcCEEEECcCCCcC
Confidence            4  3566777  4 999999999999874

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.07  E-value=0.0022  Score=72.98  Aligned_cols=57  Identities=14%  Similarity=0.100  Sum_probs=44.7

Q ss_pred             CHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEE-EEEeeccCCCCceEEEcCEEEEccCCcc
Q psy14927        947 DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNIT-VTIENVKDPTKKEELSCDALLVCVGRRP 1010 (1074)
Q Consensus       947 ~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~-v~~~~~~~~g~~~~i~~D~vi~a~G~~p 1010 (1074)
                      +..+...+.+.+++.|++++.++.|+++..+++.+. |++.+      + ++.+|.||+|+|...
T Consensus       148 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~~------g-~i~a~~VV~A~G~~s  205 (382)
T 1y56_B          148 PFEATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNK------G-IIKTGIVVNATNAWA  205 (382)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETT------E-EEECSEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHCCCEEECCceEEEEEEECCEEEEEEECC------c-EEECCEEEECcchhH
Confidence            355677788888899999999999999987666554 54322      3 799999999999754

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=97.07  E-value=0.002  Score=77.64  Aligned_cols=103  Identities=22%  Similarity=0.162  Sum_probs=67.9

Q ss_pred             cCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhCh--------h
Q psy14927          9 NGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDY--------L   80 (1074)
Q Consensus         9 ~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~--------~   80 (1074)
                      .|++++|+.+|+++-..+                    ++++..+..+|..+...|++++|.++|.++-..        .
T Consensus         2 ~g~~~~A~~~~~~al~~~--------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   61 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR--------------------PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA   61 (568)
T ss_dssp             ---------------------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC--------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            478899999999886433                    345778888899999999999999999986443        3


Q ss_pred             hhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927         81 SMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus        81 ~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                      .+..+|..+|++++|.+..+     .+.+..+.+.+|..|.+.|++++|+++|.++
T Consensus        62 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  117 (568)
T 2vsy_A           62 RLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRA  117 (568)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            45666888899999988766     3567778889999999999999999887653

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=97.07  E-value=0.0057  Score=60.21  Aligned_cols=97  Identities=18%  Similarity=0.143  Sum_probs=71.2

Q ss_pred             hcHHHHHHHhhc-----CCChHHHHHHHHHHHhccCHHHHHHHHHHhhCh--------hhhhhHhhccCCHHHHHHHHHh
Q psy14927         35 ENTDKLEKYIIQ-----SKDPVLLKWWAQYIESTEDMDLAMKYYEEARDY--------LSMVRVLCFLQDFSRAAELANA  101 (1074)
Q Consensus        35 ~~~~~~~~~~~~-----~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~--------~~~vr~l~~~~~~~~a~~i~~~  101 (1074)
                      +++.++..+..+     ++++..+..+|..+...|++++|.++|.++-..        ..+..++...|++++|.+..+.
T Consensus        22 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  101 (186)
T 3as5_A           22 GRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIK  101 (186)
T ss_dssp             TCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            456666666555     356778888899999999999999998886432        2345567778888888887663


Q ss_pred             -----cCChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927        102 -----SGDTAAAYHLARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus       102 -----~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                           +.+......+|..+...|++++|+++|.++
T Consensus       102 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~  136 (186)
T 3as5_A          102 VAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIA  136 (186)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence                 356667778888888888888888876543

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=97.05  E-value=0.00075  Score=81.57  Aligned_cols=54  Identities=11%  Similarity=-0.050  Sum_probs=36.4

Q ss_pred             hhhhHHHHhhhCCeEEEee-eEEEec--C-CeE-EEEe--CCCCeeEEEcCeEEEccCCCC
Q psy14927        844 LTGGIAHLFKSNKVTQLNG-HGKITG--P-NTV-TVIK--SDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       844 l~~~~~~~l~~~gV~~~~g-~v~~id--~-~~~-~v~~--~~G~~~~i~~d~lIIATG~~p  897 (1074)
                      +...+.+.+.+.||+++++ .|+.+.  . +.+ .|.+  .+|+..++.+|.||+|||+.+
T Consensus       257 l~~~L~~~~~~~gv~i~~~t~v~~l~~~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~  317 (572)
T 1d4d_A          257 VAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFA  317 (572)
T ss_dssp             HHHHHHHHHHHTTCEEESSEEEEEEEEC--CCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred             HHHHHHHHHHHcCCeEEecCEEEEEEECCCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCc
Confidence            3344666677789999999 466652  2 222 2333  366445799999999999865

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=97.04  E-value=0.00043  Score=77.84  Aligned_cols=34  Identities=12%  Similarity=0.100  Sum_probs=29.5

Q ss_pred             CCCCCEEEecccCCCCCcHHHHHHHHHHHHHHhhC
Q psy14927       1038 TVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus      1038 ts~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I~~ 1072 (1074)
                      ...|++|.+||...+. ....|+.+|..+|..|+.
T Consensus       307 ~~~~~l~laGd~~~g~-~v~~ai~sg~~aa~~i~~  340 (342)
T 3qj4_A          307 HHKPFLACGGDGFTQS-NFDGCITSALCVLEALKN  340 (342)
T ss_dssp             ETTTEEEECSGGGSCS-SHHHHHHHHHHHHHHHTT
T ss_pred             cCCccEEEEccccCCC-CccHHHHHHHHHHHHHHh
Confidence            3568999999998776 789999999999999875

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=97.03  E-value=0.00039  Score=81.57  Aligned_cols=103  Identities=15%  Similarity=0.051  Sum_probs=63.2

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccccc-------cccc---hhhh---------h-----------hh---
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKG-------VKLN---LETM---------M-----------GT---  836 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g-------~~~~---~~~~---------~-----------~~---  836 (1074)
                      .+|+||||||+|+++|+.|++     +++|+.+...       ..+.   +..+         .           +.   
T Consensus         7 ~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~   86 (453)
T 3atr_A            7 YDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPDMQT   86 (453)
T ss_dssp             CSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTTSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECCCCce
Confidence            459999999999999999998     6888765321       1000   0000         0           00   


Q ss_pred             --------hhHHHhhhhhhHHHHhhhCCeEEEee-eEEEec--CCeEE-EEeC---CCCeeEEEcCeEEEccCCCC
Q psy14927        837 --------KSAAVKALTGGIAHLFKSNKVTQLNG-HGKITG--PNTVT-VIKS---DGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       837 --------~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id--~~~~~-v~~~---~G~~~~i~~d~lIIATG~~p  897 (1074)
                              ..-....+...+.+.+.+.||+++.+ +|+.+.  .+.+. |++.   +|+..++.+|.||.|+|...
T Consensus        87 ~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s  162 (453)
T 3atr_A           87 VWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSR  162 (453)
T ss_dssp             EEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECCGGGC
T ss_pred             EEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECcCCch
Confidence                    00000123334555666789999999 566654  33432 4443   66444899999999999865

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=97.02  E-value=0.0025  Score=62.46  Aligned_cols=110  Identities=11%  Similarity=0.083  Sum_probs=81.6

Q ss_pred             cCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhC--------hh
Q psy14927          9 NGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARD--------YL   80 (1074)
Q Consensus         9 ~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d--------~~   80 (1074)
                      ..++.+++.-+.+.|..-.++..+   +          ++++..+..+|..+...|++++|+++|.++=.        |.
T Consensus         8 ~~~~~~~l~~~~~~~~~l~~al~l---~----------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~   74 (151)
T 3gyz_A            8 NESISTAVIDAINSGATLKDINAI---P----------DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIM   74 (151)
T ss_dssp             -CHHHHHHHHHHHTSCCTGGGCCS---C----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCHHHHhCC---C----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            344556666666666443333332   1          22355677789999999999999999998543        34


Q ss_pred             hhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927         81 SMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus        81 ~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                      ++..+|..+|++++|.+..+     .+.+..+.+.+|..|...|++++|++.|.++
T Consensus        75 ~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~a  130 (151)
T 3gyz_A           75 GLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELV  130 (151)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            56677889999999988765     4678899999999999999999999987653

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=97.02  E-value=0.0016  Score=74.32  Aligned_cols=71  Identities=15%  Similarity=0.235  Sum_probs=52.9

Q ss_pred             CcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927        930 AEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus       930 ~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
                      ..+.++.+.....   .+..+...+.+.+++.|++++.++.|+++..+++++.|.+.+       .++.+|.||+|+|..
T Consensus       135 ~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~-------g~~~a~~vV~A~G~~  204 (389)
T 2gf3_A          135 NYNAIFEPNSGVL---FSENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETAN-------GSYTADKLIVSMGAW  204 (389)
T ss_dssp             TEEEEEETTCEEE---EHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETT-------EEEEEEEEEECCGGG
T ss_pred             CceEEEeCCCcEE---eHHHHHHHHHHHHHHCCCEEEcCcEEEEEEecCCeEEEEeCC-------CEEEeCEEEEecCcc
Confidence            4566776655443   135677788888999999999999999998866665554321       269999999999975


Q ss_pred             c
Q psy14927       1010 P 1010 (1074)
Q Consensus      1010 p 1010 (1074)
                      +
T Consensus       205 ~  205 (389)
T 2gf3_A          205 N  205 (389)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=97.00  E-value=0.0004  Score=80.30  Aligned_cols=90  Identities=16%  Similarity=0.101  Sum_probs=64.5

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEecC
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITGP  869 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id~  869 (1074)
                      +|+|||||+.|+.+|..+++     ++++..+....         .  .....+...+.+.+++.||+|+++ .++.++.
T Consensus       145 ~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~---------~--~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~  213 (410)
T 3ef6_A          145 RLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLV---------R--VLGRRIGAWLRGLLTELGVQVELGTGVVGFSG  213 (410)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSH---------H--HHCHHHHHHHHHHHHHHTCEEECSCCEEEEEC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccch---------h--hcCHHHHHHHHHHHHHCCCEEEeCCEEEEEec
Confidence            49999999999999999988     44444332210         0  011334445667778889999998 5777765


Q ss_pred             C--eEEEEeCCCCeeEEEcCeEEEccCCCCC
Q psy14927        870 N--TVTVIKSDGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       870 ~--~~~v~~~~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      +  ...|.+++|  .++.+|.||+|||.+|.
T Consensus       214 ~~~~~~v~~~dg--~~i~aD~Vv~a~G~~p~  242 (410)
T 3ef6_A          214 EGQLEQVMASDG--RSFVADSALICVGAEPA  242 (410)
T ss_dssp             SSSCCEEEETTS--CEEECSEEEECSCEEEC
T ss_pred             cCcEEEEEECCC--CEEEcCEEEEeeCCeec
Confidence            3  235778888  68999999999999874

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.00  E-value=0.005  Score=63.02  Aligned_cols=105  Identities=14%  Similarity=0.175  Sum_probs=75.8

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhC-------
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARD-------   78 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d-------   78 (1074)
                      +...|++++|+..|+++-  +                     .++..+..+|..+...|++++|.++|.++-.       
T Consensus        16 ~~~~~~~~~A~~~~~~a~--~---------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~   72 (213)
T 1hh8_A           16 AADKKDWKGALDAFSAVQ--D---------------------PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV   72 (213)
T ss_dssp             HHHTTCHHHHHHHHHTSS--S---------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHhCCHHHHHHHHHHHc--C---------------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH
Confidence            446778888888887773  1                     1366778888888888888888888887632       


Q ss_pred             -hhhhhhHhhccCCHHHHHHHHHh-----cCCh----------------HHHHHHHHHHHhcCChHHHHHHHHHhCC
Q psy14927         79 -YLSMVRVLCFLQDFSRAAELANA-----SGDT----------------AAAYHLARQYENSGQFDEAIHFYSVAGS  133 (1074)
Q Consensus        79 -~~~~vr~l~~~~~~~~a~~i~~~-----~~~~----------------~~~~~la~~~~~~g~~~~Ai~~y~~a~~  133 (1074)
                       +..+..++..+|++++|.+..+.     +++.                .+.+.+|..|...|++++|+++|.++-.
T Consensus        73 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  149 (213)
T 1hh8_A           73 AYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  149 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence             23455667778888888776652     2222                6778999999999999999988766433

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=96.99  E-value=0.014  Score=69.54  Aligned_cols=194  Identities=13%  Similarity=0.124  Sum_probs=106.0

Q ss_pred             cCCChHHHHHHHHHHHh-------ccCHH-------HHHHHHHHhhC-h--------hhhhhHhhccCCHHHHHHHHHh-
Q psy14927         46 QSKDPVLLKWWAQYIES-------TEDMD-------LAMKYYEEARD-Y--------LSMVRVLCFLQDFSRAAELANA-  101 (1074)
Q Consensus        46 ~~~~~~l~~~~a~~~e~-------~~~~~-------~A~~~y~~a~d-~--------~~~vr~l~~~~~~~~a~~i~~~-  101 (1074)
                      .+.++.+|..||.+++.       .|+++       +|..+|.+|=. .        ...+.++...|++++|.++.+. 
T Consensus       268 ~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~a  347 (530)
T 2ooe_A          268 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL  347 (530)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            36789999999999986       78877       88888888743 1        1223344555666666655442 


Q ss_pred             ----cCCh-HHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHccCChhH
Q psy14927        102 ----SGDT-AAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLETIEPDK  176 (1074)
Q Consensus       102 ----~~~~-~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~~~~~  176 (1074)
                          +.+. ......++++.+.|++++|++.|.++-...                    ......+.           ..
T Consensus       348 l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--------------------~~~~~~~~-----------~~  396 (530)
T 2ooe_A          348 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--------------------RTRHHVYV-----------TA  396 (530)
T ss_dssp             HHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--------------------TCCTHHHH-----------HH
T ss_pred             hCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--------------------CCchHHHH-----------HH
Confidence                1222 234455555555555655555554432100                    00011111           11


Q ss_pred             HHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcCCCCCChhHHH
Q psy14927        177 AVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPELLK  256 (1074)
Q Consensus       177 A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~~~~~~~~~~~  256 (1074)
                      |...|...|++.+|..++.+.             ++               ..-.+.++|...++++..+   +++   .
T Consensus       397 a~~~~~~~~~~~~A~~~~e~a-------------l~---------------~~p~~~~~~~~~~~~~~~~---g~~---~  442 (530)
T 2ooe_A          397 ALMEYYCSKDKSVAFKIFELG-------------LK---------------KYGDIPEYVLAYIDYLSHL---NED---N  442 (530)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHH-------------HH---------------HHTTCHHHHHHHHHHHTTT---TCH---H
T ss_pred             HHHHHHHcCChhHHHHHHHHH-------------HH---------------HCCCCHHHHHHHHHHHHhC---CCH---h
Confidence            112233344555554444331             00               0113356677777776655   333   3


Q ss_pred             HHHHHHHccC-----CHHHHHHHHHHHHhHHHHhhcCHHHHHHHHHHHHHHHHh
Q psy14927        257 SIISFYSKGK-----APHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLK  305 (1074)
Q Consensus       257 ~i~~~Y~k~~-----~~~~aa~~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~  305 (1074)
                      .+..+|.++-     ..+....++....+.| ..+||++.+..++..+.+.+.+
T Consensus       443 ~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e-~~~G~~~~~~~~~~r~~~~~p~  495 (530)
T 2ooe_A          443 NTRVLFERVLTSGSLPPEKSGEIWARFLAFE-SNIGDLASILKVEKRRFTAFRE  495 (530)
T ss_dssp             HHHHHHHHHHHSCCSCGGGCHHHHHHHHHHH-HHSSCHHHHHHHHHHHHHHTHH
T ss_pred             hHHHHHHHHHhccCCCHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHCch
Confidence            3333443331     1223445666667778 8899999999999998888864

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=96.99  E-value=0.001  Score=75.89  Aligned_cols=57  Identities=12%  Similarity=0.241  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHhCCCEEEeCceEEEEEecCCeEE-EEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927        950 VAKQFQRILGKQGMQFKLGTKVTGASKSGDNIT-VTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus       950 ~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~-v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
                      +...+.+...+.|++++.++.+..+..+++.+. +....   +++..++.+|.||-|.|..
T Consensus       104 ~~~~L~~~a~~~G~~~~~~~~v~~~~~~~~~~~~v~~~~---~~~~~~~~a~~vIgAdG~~  161 (397)
T 3oz2_A          104 FDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRH---NNEIVDVRAKMVIAADGFE  161 (397)
T ss_dssp             HHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEE---TTEEEEEEEEEEEECCCTT
T ss_pred             HHHHHHHHHHhcCcEEeeeeeeeeeeeccceeeeeeecc---cccceEEEEeEEEeCCccc
Confidence            344556667788999999999999887766643 33333   3556789999999999854

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=96.99  E-value=0.0004  Score=80.15  Aligned_cols=46  Identities=20%  Similarity=0.201  Sum_probs=34.3

Q ss_pred             HHHHhhhCCeEEEee-eEEEec--CCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        848 IAHLFKSNKVTQLNG-HGKITG--PNTVTVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       848 ~~~~l~~~gV~~~~g-~v~~id--~~~~~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                      +.+.+..  ++++++ +|+.++  .+.+.|++.+|  .++.+|.||.|+|...
T Consensus       133 L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~g--~~~~a~~vV~AdG~~S  181 (407)
T 3rp8_A          133 MLDYWGR--DSVQFGKRVTRCEEDADGVTVWFTDG--SSASGDLLIAADGSHS  181 (407)
T ss_dssp             HHHHHCG--GGEEESCCEEEEEEETTEEEEEETTS--CEEEESEEEECCCTTC
T ss_pred             HHHhCCc--CEEEECCEEEEEEecCCcEEEEEcCC--CEEeeCEEEECCCcCh
Confidence            3444443  788888 466654  56778888888  5899999999999875

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=96.96  E-value=0.00061  Score=78.91  Aligned_cols=90  Identities=14%  Similarity=0.103  Sum_probs=64.3

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEecC
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITGP  869 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id~  869 (1074)
                      +|+|||||+.|+.+|..+++     ++++..+......           ....+...+.+.+++.||+++.+ .++.+..
T Consensus       154 ~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~-----------~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~  222 (415)
T 3lxd_A          154 NAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARV-----------AGEALSEFYQAEHRAHGVDLRTGAAMDCIEG  222 (415)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT-----------SCHHHHHHHHHHHHHTTCEEEETCCEEEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhhh-----------cCHHHHHHHHHHHHhCCCEEEECCEEEEEEe
Confidence            38999999999999999988     4444433321110           01333444667778899999998 5776654


Q ss_pred             C--e-EEEEeCCCCeeEEEcCeEEEccCCCCC
Q psy14927        870 N--T-VTVIKSDGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       870 ~--~-~~v~~~~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      +  . ..|.+++|  .++.+|.||+|||.+|.
T Consensus       223 ~~~~v~~v~l~dG--~~i~aD~Vv~a~G~~p~  252 (415)
T 3lxd_A          223 DGTKVTGVRMQDG--SVIPADIVIVGIGIVPC  252 (415)
T ss_dssp             SSSBEEEEEESSS--CEEECSEEEECSCCEES
T ss_pred             cCCcEEEEEeCCC--CEEEcCEEEECCCCccC
Confidence            2  3 35778888  68999999999999874

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=96.95  E-value=0.00014  Score=88.63  Aligned_cols=64  Identities=11%  Similarity=0.109  Sum_probs=48.0

Q ss_pred             HhCCCEEEeCceEEEEEecCC--e-EEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcc
Q psy14927        959 GKQGMQFKLGTKVTGASKSGD--N-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIE 1023 (1074)
Q Consensus       959 ~~~gV~i~~~~~v~~i~~~~~--~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ 1023 (1074)
                      ++.||+|++++.|++|..+++  . ..|++.+.. +|+..++.+|.||+|+|..|++.++.+...|..
T Consensus       271 ~~~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~-~g~~~~i~A~~VIlaaG~~~s~~lL~~sgiG~~  337 (623)
T 3pl8_A          271 PEERFNLFPAVACERVVRNALNSEIESLHIHDLI-SGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQL  337 (623)
T ss_dssp             EEEEEEEECSEEEEEEEECTTSSCEEEEEEEETT-TCCEEEECEEEEEECSCTTHHHHHHHTTTSSCC
T ss_pred             cCCCEEEEeCCEEEEEEEECCCCEEEEEEEEEcC-CCcEEEEECCEEEEcCCCcCCHHHHHhcCCCcc
Confidence            345899999999999987542  2 557766532 466678999999999999999987655555544

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=96.91  E-value=0.00043  Score=78.99  Aligned_cols=50  Identities=10%  Similarity=0.060  Sum_probs=36.8

Q ss_pred             hhhHHHHhhhCCeEEEee-eEEEec--CCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        845 TGGIAHLFKSNKVTQLNG-HGKITG--PNTVTVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       845 ~~~~~~~l~~~gV~~~~g-~v~~id--~~~~~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                      ...+.+.+.+.|++++.+ .|+.+.  .+.+.|.+.+|   ++.+|.||+|||...
T Consensus       167 ~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~v~~~~g---~~~a~~vV~A~G~~s  219 (382)
T 1ryi_A          167 CKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG---DVWANHVVVASGVWS  219 (382)
T ss_dssp             HHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE---EEEEEEEEECCGGGT
T ss_pred             HHHHHHHHHHCCCEEEcCCcEEEEEEECCEEEEEcCCc---eEEcCEEEECCChhH
Confidence            344566677789999998 566664  34456666665   799999999999864

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=96.91  E-value=0.0024  Score=79.13  Aligned_cols=106  Identities=10%  Similarity=0.042  Sum_probs=87.0

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhC-------
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARD-------   78 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d-------   78 (1074)
                      +.++|++++|+..|+++-..+                    ++++..+..+|..+...|++++|+++|.+|=.       
T Consensus        53 l~~~g~~~eA~~~~~~Al~l~--------------------P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~  112 (723)
T 4gyw_A           53 LQQQGKLQEALMHYKEAIRIS--------------------PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFAD  112 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC--------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC--------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            567788888888888875332                    45677889999999999999999999998532       


Q ss_pred             -hhhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927         79 -YLSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus        79 -~~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                       +.++..+|..+|++++|.+..+     ++++..+...+|..+..+|++++|++.|.++
T Consensus       113 a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~ka  171 (723)
T 4gyw_A          113 AHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKL  171 (723)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHH
Confidence             3566777999999999988766     3577888999999999999999999987553

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=96.90  E-value=0.0057  Score=57.63  Aligned_cols=93  Identities=12%  Similarity=0.157  Sum_probs=63.4

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhh
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVR   84 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr   84 (1074)
                      .+..+|+|++|+..|+++-..+                    ++++..|..+|..+...|+|++|+++|.++=....   
T Consensus        17 ~~~~~~~~~~A~~~y~~Al~~~--------------------p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~---   73 (127)
T 4gcn_A           17 AAYKQKDFEKAHVHYDKAIELD--------------------PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR---   73 (127)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC--------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC--------------------CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCc---
Confidence            3556788888888888775322                    34577788888888888888888888866532211   


Q ss_pred             HhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927         85 VLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus        85 ~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                        .....+..         -..+.+.+|..+...|++++|+++|.++
T Consensus        74 --~~~~~~~~---------~a~~~~~lg~~~~~~~~~~~A~~~~~ka  109 (127)
T 4gcn_A           74 --ETRADYKL---------IAKAMSRAGNAFQKQNDLSLAVQWFHRS  109 (127)
T ss_dssp             --HTTCCHHH---------HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             --ccchhhHH---------HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence              00011100         0134668999999999999999998764

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=96.90  E-value=0.003  Score=61.45  Aligned_cols=80  Identities=14%  Similarity=0.050  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHhhC--------hhhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhc
Q psy14927         52 LLKWWAQYIESTEDMDLAMKYYEEARD--------YLSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENS  118 (1074)
Q Consensus        52 l~~~~a~~~e~~~~~~~A~~~y~~a~d--------~~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~  118 (1074)
                      .+..+|..+...|++++|+.+|.++=.        |..+..++..+|++++|.+..+     .+.+..+.+.+|..|...
T Consensus        23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~  102 (148)
T 2vgx_A           23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQX  102 (148)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence            334445555555555555555554311        1223334455555555554433     356788899999999999


Q ss_pred             CChHHHHHHHHHh
Q psy14927        119 GQFDEAIHFYSVA  131 (1074)
Q Consensus       119 g~~~~Ai~~y~~a  131 (1074)
                      |++++|++.|.++
T Consensus       103 g~~~~A~~~~~~a  115 (148)
T 2vgx_A          103 GELAEAESGLFLA  115 (148)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            9999999987654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=96.89  E-value=0.0011  Score=64.58  Aligned_cols=102  Identities=13%  Similarity=0.147  Sum_probs=59.8

Q ss_pred             hhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhC--------
Q psy14927          7 MKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARD--------   78 (1074)
Q Consensus         7 ~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d--------   78 (1074)
                      .++|++++|+..|+++-..+.+-                    +..+-.+|+.+...|+|++|.++|.++=.        
T Consensus         8 ~~~~~~e~ai~~~~~a~~~~p~~--------------------~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a   67 (150)
T 4ga2_A            8 RSKADVERYIASVQGSTPSPRQK--------------------SIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKA   67 (150)
T ss_dssp             CCHHHHHHHHHHHHHHSCSHHHH--------------------HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHcChHHHHHHHHHHhcccCccc--------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            45688999999999988665222                    12223334444444444444444444311        


Q ss_pred             hhhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhcCChHHHHHHH
Q psy14927         79 YLSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQFDEAIHFY  128 (1074)
Q Consensus        79 ~~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~g~~~~Ai~~y  128 (1074)
                      |..+..++..+|++++|....+     .+.+..+.+.+|..|.+.|++++|++.|
T Consensus        68 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~  122 (150)
T 4ga2_A           68 HRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYW  122 (150)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHH
T ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Confidence            1222333444444444444332     3567788889999999999988877765

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=96.88  E-value=0.00058  Score=78.77  Aligned_cols=90  Identities=9%  Similarity=0.083  Sum_probs=64.2

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEecC
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITGP  869 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id~  869 (1074)
                      +|+|||||+.|+.+|..+++     ++++..+......           ....+...+.+.+++.||+++.+ .++.+..
T Consensus       144 ~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~-----------~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~  212 (404)
T 3fg2_P          144 HVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARV-----------VTPEISSYFHDRHSGAGIRMHYGVRATEIAA  212 (404)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTT-----------SCHHHHHHHHHHHHHTTCEEECSCCEEEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhc-----------cCHHHHHHHHHHHHhCCcEEEECCEEEEEEe
Confidence            49999999999999999987     4444433321110           01233444667788899999999 5776653


Q ss_pred             C--e-EEEEeCCCCeeEEEcCeEEEccCCCCC
Q psy14927        870 N--T-VTVIKSDGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       870 ~--~-~~v~~~~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      +  . ..|.+++|  .++.+|.||+|||.+|.
T Consensus       213 ~~~~v~~V~~~dG--~~i~aD~Vv~a~G~~p~  242 (404)
T 3fg2_P          213 EGDRVTGVVLSDG--NTLPCDLVVVGVGVIPN  242 (404)
T ss_dssp             ETTEEEEEEETTS--CEEECSEEEECCCEEEC
T ss_pred             cCCcEEEEEeCCC--CEEEcCEEEECcCCccC
Confidence            2  3 35778888  68999999999999874

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=96.88  E-value=0.044  Score=59.49  Aligned_cols=38  Identities=11%  Similarity=0.023  Sum_probs=30.5

Q ss_pred             HHHHHHHHHhHHHHhhcCHHHH-HHHHHHHHHHHHhcCCC
Q psy14927        271 LANFYVSCAQVEIDEFGNYEKG-LGALNEAKRCLLKHNDS  309 (1074)
Q Consensus       271 aa~~~~~~a~~ei~e~~~y~~a-~~~l~~a~~~l~~~~~~  309 (1074)
                      .+.+|...+... ...|+|++| ...+..|+......+..
T Consensus       235 ~~~~~~~lg~~y-~~~g~~~~Ai~~~~~~Al~~~~~~~~~  273 (293)
T 2qfc_A          235 IGQLYYQRGECL-RKLEYEEAEIEDAYKKASFFFDILEMH  273 (293)
T ss_dssp             HHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHH-HHcCCcHHHHHHHHHHHHHHHHHhCcH
Confidence            467777888887 888999999 88899998888776653

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=96.86  E-value=0.001  Score=77.16  Aligned_cols=54  Identities=20%  Similarity=0.238  Sum_probs=44.0

Q ss_pred             CHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927        947 DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus       947 ~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
                      ...+.+.+.+.+++.|++|++++.|++|..+++++ |. .+      +.++.+|.||+|+|.
T Consensus       188 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~v-V~-~~------g~~~~ad~Vv~a~~~  241 (421)
T 3nrn_A          188 CKAVIDELERIIMENKGKILTRKEVVEINIEEKKV-YT-RD------NEEYSFDVAISNVGV  241 (421)
T ss_dssp             HHHHHHHHHHHHHTTTCEEESSCCEEEEETTTTEE-EE-TT------CCEEECSEEEECSCH
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCeEEEEEEECCEE-EE-eC------CcEEEeCEEEECCCH
Confidence            46678888899999999999999999999876666 42 22      357999999999875

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=96.86  E-value=0.00083  Score=83.01  Aligned_cols=48  Identities=6%  Similarity=0.097  Sum_probs=36.8

Q ss_pred             HHHHhhhCCeEEEee-eEEEec--CCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        848 IAHLFKSNKVTQLNG-HGKITG--PNTVTVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       848 ~~~~l~~~gV~~~~g-~v~~id--~~~~~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                      +.+.+.+.||+++.+ +|+.+.  .+.+.|.+.+|  .++.+|.||+|||...
T Consensus       423 L~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G--~~i~Ad~VVlAtG~~s  473 (676)
T 3ps9_A          423 VLELAQQQGLQIYYQYQLQNFSRKDDCWLLNFAGD--QQATHSVVVLANGHQI  473 (676)
T ss_dssp             HHHHHHHTTCEEEESCCEEEEEEETTEEEEEETTS--CEEEESEEEECCGGGG
T ss_pred             HHHHHHhCCCEEEeCCeeeEEEEeCCeEEEEECCC--CEEECCEEEECCCcch
Confidence            445556789999998 577664  45677777776  4799999999999864

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=96.86  E-value=0.001  Score=78.89  Aligned_cols=104  Identities=9%  Similarity=-0.020  Sum_probs=65.5

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhcccccc-----ccc------------hhhhh-----------------
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGV-----KLN------------LETMM-----------------  834 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~-----~~~------------~~~~~-----------------  834 (1074)
                      +.+|+||||||+|+++|+.|++     +++|+.+..+.     .+.            +..+.                 
T Consensus        11 ~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~   90 (500)
T 2qa1_A           11 DAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGLPIDF   90 (500)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETTEEEEG
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccccceeccc
Confidence            4459999999999999999999     67776543221     000            00000                 


Q ss_pred             ---hhhhH-----HHhhhhhhHHHHhhhCCeEEEee-eEEEe--cCCeEEEEeCCCC-eeEEEcCeEEEccCCCC
Q psy14927        835 ---GTKSA-----AVKALTGGIAHLFKSNKVTQLNG-HGKIT--GPNTVTVIKSDGS-TEEVKTKNILIATGSEV  897 (1074)
Q Consensus       835 ---~~~~~-----~~~~l~~~~~~~l~~~gV~~~~g-~v~~i--d~~~~~v~~~~G~-~~~i~~d~lIIATG~~p  897 (1074)
                         .....     ....+...+.+.+...|++++.+ +++.+  +.+.++|++.+|. ..++++|+||.|.|.+.
T Consensus        91 ~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S  165 (500)
T 2qa1_A           91 GVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGRS  165 (500)
T ss_dssp             GGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCCTTC
T ss_pred             ccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCcch
Confidence               00000     01223334556666779999998 56665  3556777776552 24799999999999975

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=96.86  E-value=0.0011  Score=78.65  Aligned_cols=104  Identities=11%  Similarity=0.050  Sum_probs=65.9

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccc-----cch------------hhhh---------------hh
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVK-----LNL------------ETMM---------------GT  836 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~-----~~~------------~~~~---------------~~  836 (1074)
                      ..+|+||||||+|+++|+.|++     +++|+.+.....     +..            ..+.               ..
T Consensus        12 ~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~   91 (499)
T 2qa2_A           12 DASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGRPVDF   91 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTEEEEG
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecceeccc
Confidence            4459999999999999999999     677765432210     000            0000               00


Q ss_pred             ----------hhHHHhhhhhhHHHHhhhCCeEEEee-eEEEe--cCCeEEEEeCCCC-eeEEEcCeEEEccCCCC
Q psy14927        837 ----------KSAAVKALTGGIAHLFKSNKVTQLNG-HGKIT--GPNTVTVIKSDGS-TEEVKTKNILIATGSEV  897 (1074)
Q Consensus       837 ----------~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~i--d~~~~~v~~~~G~-~~~i~~d~lIIATG~~p  897 (1074)
                                ..-....+...+.+.+...|++++.+ +++.+  +.+.++|++.+|. ..++++|+||.|.|.+.
T Consensus        92 ~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S  166 (499)
T 2qa2_A           92 GVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRS  166 (499)
T ss_dssp             GGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTTC
T ss_pred             ccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCccc
Confidence                      00001223334556666779999999 56665  3456777776652 34799999999999975

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=96.83  E-value=0.0038  Score=59.91  Aligned_cols=47  Identities=17%  Similarity=0.092  Sum_probs=33.2

Q ss_pred             HhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927         85 VLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus        85 ~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                      ++..+|++++|....+     .+.+....+.+|..|...|++++|++.|.++
T Consensus        61 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  112 (142)
T 2xcb_A           61 CRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSA  112 (142)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3444444444443332     3567788899999999999999999987654

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=96.81  E-value=0.00089  Score=75.99  Aligned_cols=49  Identities=24%  Similarity=0.268  Sum_probs=37.1

Q ss_pred             hhHHHHhhhCCeEEEee-eEEEec--CCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        846 GGIAHLFKSNKVTQLNG-HGKITG--PNTVTVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       846 ~~~~~~l~~~gV~~~~g-~v~~id--~~~~~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                      ..+.+.+.+.|++++.+ +|+.+.  .+.+.|.+.+|   ++.+|.||+|||+..
T Consensus       153 ~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~v~~~~g---~~~a~~vV~a~G~~s  204 (372)
T 2uzz_A          153 KTWIQLAKEAGCAQLFNCPVTAIRHDDDGVTIETADG---EYQAKKAIVCAGTWV  204 (372)
T ss_dssp             HHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC---EEEEEEEEECCGGGG
T ss_pred             HHHHHHHHHCCCEEEcCCEEEEEEEcCCEEEEEECCC---eEEcCEEEEcCCccH
Confidence            33556667789999998 677764  34567777777   599999999999864

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=96.81  E-value=0.00095  Score=72.92  Aligned_cols=86  Identities=10%  Similarity=0.063  Sum_probs=61.8

Q ss_pred             hhhhhhccccchHHHHHHHhhhhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEE
Q psy14927        795 QVVLNTLGNCAAVQANYHLATKLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTV  874 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v  874 (1074)
                      ++|+|||||+.|+..|..+++.        + .+.+-  ....    ..+...+.+.+.+.||+++...++.++.+. .|
T Consensus       142 ~~v~vvG~G~~~~e~a~~l~~~--------g-~v~~v--~~~~----~~~~~~~~~~l~~~gv~i~~~~v~~i~~~~-~v  205 (297)
T 3fbs_A          142 GKIGVIAASPMAIHHALMLPDW--------G-ETTFF--TNGI----VEPDADQHALLAARGVRVETTRIREIAGHA-DV  205 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHGGGT--------S-EEEEE--CTTT----CCCCHHHHHHHHHTTCEEECSCEEEEETTE-EE
T ss_pred             CEEEEEecCccHHHHHHHhhhc--------C-cEEEE--ECCC----CCCCHHHHHHHHHCCcEEEcceeeeeecCC-eE
Confidence            3499999999999999999871        1 11110  0000    022334567778889999976788888765 67


Q ss_pred             EeCCCCeeEEEcCeEEEccCCCCC
Q psy14927        875 IKSDGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       875 ~~~~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      .+.+|  .++.+|.||+|||..|.
T Consensus       206 ~~~~g--~~~~~D~vi~a~G~~p~  227 (297)
T 3fbs_A          206 VLADG--RSIALAGLFTQPKLRIT  227 (297)
T ss_dssp             EETTS--CEEEESEEEECCEEECC
T ss_pred             EeCCC--CEEEEEEEEEccCcccC
Confidence            78888  68999999999999874

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=96.81  E-value=0.00094  Score=79.18  Aligned_cols=90  Identities=16%  Similarity=0.183  Sum_probs=62.4

Q ss_pred             hhhhhccccchHHHHHHHhhh---------hhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEE
Q psy14927        796 VVLNTLGNCAAVQANYHLATK---------LFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGK  865 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~~---------l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~  865 (1074)
                      +|+|||||+.|+..|..+++.         +++..+..     +....      ...+...+.+.+++.||+++.+ .++
T Consensus       182 ~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~-----~~~~l------~~~~~~~~~~~l~~~GV~v~~~~~V~  250 (493)
T 1m6i_A          182 SITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGN-----MGKIL------PEYLSNWTMEKVRREGVKVMPNAIVQ  250 (493)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSST-----TTTTS------CHHHHHHHHHHHHTTTCEEECSCCEE
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCccc-----ccccC------CHHHHHHHHHHHHhcCCEEEeCCEEE
Confidence            499999999999999998761         11111100     00000      1233444667788899999999 577


Q ss_pred             Eec--CCeEEEEeCCCCeeEEEcCeEEEccCCCCC
Q psy14927        866 ITG--PNTVTVIKSDGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       866 ~id--~~~~~v~~~~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      .++  .+.+.|++.+|  .++.+|.||+|+|.+|.
T Consensus       251 ~i~~~~~~~~v~l~dG--~~i~aD~Vv~a~G~~pn  283 (493)
T 1m6i_A          251 SVGVSSGKLLIKLKDG--RKVETDHIVAAVGLEPN  283 (493)
T ss_dssp             EEEEETTEEEEEETTS--CEEEESEEEECCCEEEC
T ss_pred             EEEecCCeEEEEECCC--CEEECCEEEECCCCCcc
Confidence            774  34556778888  68999999999999874

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=96.81  E-value=0.00098  Score=78.28  Aligned_cols=44  Identities=11%  Similarity=0.058  Sum_probs=33.7

Q ss_pred             CCeEEEeee-EEEec--CCeEEEEeC---CCCeeEEEcCeEEEccCCCCC
Q psy14927        855 NKVTQLNGH-GKITG--PNTVTVIKS---DGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       855 ~gV~~~~g~-v~~id--~~~~~v~~~---~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      .||+++.++ |+.+.  .+.+.|++.   +|+..++.+|.||+|||..|.
T Consensus       329 ~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~  378 (463)
T 3s5w_A          329 PRHAFRCMTTVERATATAQGIELALRDAGSGELSVETYDAVILATGYERQ  378 (463)
T ss_dssp             CCSEEETTEEEEEEEEETTEEEEEEEETTTCCEEEEEESEEEECCCEECC
T ss_pred             CCeEEEeCCEEEEEEecCCEEEEEEEEcCCCCeEEEECCEEEEeeCCCCC
Confidence            699999994 65554  345666665   675567999999999999885

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=96.80  E-value=0.065  Score=50.92  Aligned_cols=152  Identities=12%  Similarity=-0.016  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHccCChhHHHHHHHHhCC
Q psy14927        107 AAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLETIEPDKAVLLYHKAGA  186 (1074)
Q Consensus       107 ~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~~~~~A~~ly~kaG~  186 (1074)
                      +...+|..|...|++++|+++|.+      |++++...+.......        .+...|            ..|...|+
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~------al~~~~~~~~~~~~~~--------~~~~l~------------~~~~~~g~   64 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQ------RLLIAKEFGDKAAERI--------AYSNLG------------NAYIFLGE   64 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHH------HHHHHHHHTCHHHHHH--------HHHHHH------------HHHHHTTC
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHH------HHHHHHHhCCchHHHH--------HHHHHH------------HHHHHcCC
Confidence            466889999999999999998754      5566655432222111        111233            33334444


Q ss_pred             hHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcC-CCCCChhHHHHHHHHHHcc
Q psy14927        187 LHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSS-DWKSQPELLKSIISFYSKG  265 (1074)
Q Consensus       187 ~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~-~~~~~~~~~~~i~~~Y~k~  265 (1074)
                      +.+|++.+.+             |++..-+.++...         ...++...+..+... +++..-..++.++.+....
T Consensus        65 ~~~A~~~~~~-------------a~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~  122 (164)
T 3ro3_A           65 FETASEYYKK-------------TLLLARQLKDRAV---------EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL  122 (164)
T ss_dssp             HHHHHHHHHH-------------HHHHHHHTTCHHH---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHH-------------HHHHHHHhCCcHH---------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc
Confidence            4444444433             1111111222211         111222222222222 2222223344445555555


Q ss_pred             CCHHHHHHHHHHHHhHHHHhhcCHHHHHHHHHHHHHHHHhcC
Q psy14927        266 KAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHN  307 (1074)
Q Consensus       266 ~~~~~aa~~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~  307 (1074)
                      +.....+..+...+... ...|+|++|...+.++++...+.+
T Consensus       123 ~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~a~~~~~~~~  163 (164)
T 3ro3_A          123 KDRIGEGRACWSLGNAY-TALGNHDQAMHFAEKHLEISREVG  163 (164)
T ss_dssp             TCHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHTTC-
T ss_pred             cchHhHHHHHHHHHHHH-HHccCHHHHHHHHHHHHHHHHHhC
Confidence            55555667777778887 788999999999999998876644

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=96.80  E-value=0.00071  Score=78.77  Aligned_cols=90  Identities=13%  Similarity=0.114  Sum_probs=63.4

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEecC
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITGP  869 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id~  869 (1074)
                      +|+|||||+.|+..|..+++     ++++..+......        .   ...+...+.+.+++.||+++.+ .++.++.
T Consensus       151 ~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~--------~---~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~  219 (431)
T 1q1r_A          151 RLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERV--------T---APPVSAFYEHLHREAGVDIRTGTQVCGFEM  219 (431)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTT--------S---CHHHHHHHHHHHHHHTCEEECSCCEEEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccch--------h---hHHHHHHHHHHHHhCCeEEEeCCEEEEEEe
Confidence            39999999999999999988     4555443321110        0   0223334566777789999999 5777653


Q ss_pred             ----CeE-EEEeCCCCeeEEEcCeEEEccCCCCC
Q psy14927        870 ----NTV-TVIKSDGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       870 ----~~~-~v~~~~G~~~~i~~d~lIIATG~~p~  898 (1074)
                          +.+ .|.+++|  .++.+|.||+|+|.+|.
T Consensus       220 ~~~~~~v~~v~~~~G--~~i~~D~Vv~a~G~~p~  251 (431)
T 1q1r_A          220 STDQQKVTAVLCEDG--TRLPADLVIAGIGLIPN  251 (431)
T ss_dssp             CTTTCCEEEEEETTS--CEEECSEEEECCCEEEC
T ss_pred             ccCCCcEEEEEeCCC--CEEEcCEEEECCCCCcC
Confidence                233 5777888  68999999999999874

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=96.77  E-value=0.0013  Score=78.76  Aligned_cols=54  Identities=11%  Similarity=-0.014  Sum_probs=38.6

Q ss_pred             hhhhHHHHhhhCCeEEEee-eEEEec--CC----eEEEEeCCCC-eeEEEcCeEEEccCCCC
Q psy14927        844 LTGGIAHLFKSNKVTQLNG-HGKITG--PN----TVTVIKSDGS-TEEVKTKNILIATGSEV  897 (1074)
Q Consensus       844 l~~~~~~~l~~~gV~~~~g-~v~~id--~~----~~~v~~~~G~-~~~i~~d~lIIATG~~p  897 (1074)
                      +...+.+.+...|++++++ +|+.+.  .+    .+++++.++. ..++.+|+||.|+|...
T Consensus       122 l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~~~~~~~i~a~~vV~AdG~~S  183 (535)
T 3ihg_A          122 LEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPDGEYDLRAGYLVGADGNRS  183 (535)
T ss_dssp             HHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred             HHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEEEcCCCeEEEEeCEEEECCCCcc
Confidence            3344666677789999999 466653  44    6666665432 35799999999999975

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=96.77  E-value=0.0054  Score=57.09  Aligned_cols=86  Identities=12%  Similarity=0.050  Sum_probs=60.6

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhH
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRV   85 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~   85 (1074)
                      +...|++++|+..|+++-..+                    ++++..|..+|..+...|++++|.++|.++=..      
T Consensus        14 ~~~~~~~~~A~~~~~~al~~~--------------------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------   67 (126)
T 3upv_A           14 YFTKSDWPNAVKAYTEMIKRA--------------------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK------   67 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC--------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             HHHhcCHHHHHHHHHHHHHhC--------------------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Confidence            455667777777776654222                    344667777777777777777777777655322      


Q ss_pred             hhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHhC
Q psy14927         86 LCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAG  132 (1074)
Q Consensus        86 l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~  132 (1074)
                                     .+.+..+.+.+|..+...|++++|++.|.++-
T Consensus        68 ---------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al   99 (126)
T 3upv_A           68 ---------------DPNFVRAYIRKATAQIAVKEYASALETLDAAR   99 (126)
T ss_dssp             ---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ---------------CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence                           24567788899999999999999999876543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=96.77  E-value=0.0018  Score=64.47  Aligned_cols=106  Identities=10%  Similarity=0.159  Sum_probs=76.5

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhCh------
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDY------   79 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~------   79 (1074)
                      +...|++++|+..|+++-..                    .++++..|..+|..+...|++++|.++|.++-..      
T Consensus        20 ~~~~~~~~~A~~~~~~al~~--------------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~   79 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRA--------------------NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE   79 (177)
T ss_dssp             CC-----CCCCHHHHHHHHH--------------------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHH
T ss_pred             hhhccCHHHHHHHHHHHHHh--------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence            44556666666666554421                    2456789999999999999999999999986432      


Q ss_pred             --hhhhhH-hhccCCH--HHHHHHHH-----hcCChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927         80 --LSMVRV-LCFLQDF--SRAAELAN-----ASGDTAAAYHLARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus        80 --~~~vr~-l~~~~~~--~~a~~i~~-----~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                        ..+..+ +...|++  ++|.+..+     .+.+..+.+.+|..|...|++++|+++|.++
T Consensus        80 ~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  141 (177)
T 2e2e_A           80 LYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKV  141 (177)
T ss_dssp             HHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence              234455 5578888  88887765     3567788889999999999999999987764

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=96.74  E-value=0.0013  Score=72.89  Aligned_cols=89  Identities=16%  Similarity=0.156  Sum_probs=60.4

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEecC
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITGP  869 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id~  869 (1074)
                      +|+|||||+.|+..|..+++     ++++..+....          .    ..+...+.+.+++.||+++++ .++.++.
T Consensus       147 ~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~----------~----~~~~~~l~~~l~~~gv~i~~~~~v~~i~~  212 (320)
T 1trb_A          147 KVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA----------E----KILIKRLMDKVENGNIILHTNRTLEEVTG  212 (320)
T ss_dssp             EEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCC----------C----HHHHHHHHHHHHTSSEEEECSCEEEEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCcccc----------C----HHHHHHHHHhcccCCeEEEcCceeEEEEc
Confidence            49999999999999999987     44444332210          0    122333556677789999998 5777654


Q ss_pred             Ce--E-EEEeCC----CCeeEEEcCeEEEccCCCCC
Q psy14927        870 NT--V-TVIKSD----GSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       870 ~~--~-~v~~~~----G~~~~i~~d~lIIATG~~p~  898 (1074)
                      +.  + .|++.+    |+..++.+|.||+|||.+|.
T Consensus       213 ~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~  248 (320)
T 1trb_A          213 DQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPN  248 (320)
T ss_dssp             CSSSEEEEEEECCTTCCCCEEEECSEEEECSCEEES
T ss_pred             CCCceEEEEEEeccCCCceEEEEcCEEEEEeCCCCC
Confidence            32  2 244443    54468999999999999874

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=96.73  E-value=0.0011  Score=76.61  Aligned_cols=50  Identities=10%  Similarity=0.084  Sum_probs=33.4

Q ss_pred             HHHHhhh-CC-eEEEee-eEEEec-CCeEEEEeCC---CCeeEEEcCeEEEccCCCC
Q psy14927        848 IAHLFKS-NK-VTQLNG-HGKITG-PNTVTVIKSD---GSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       848 ~~~~l~~-~g-V~~~~g-~v~~id-~~~~~v~~~~---G~~~~i~~d~lIIATG~~p  897 (1074)
                      +.+.+.+ .| ++++.+ +|+.++ .+.+.|++.+   |...++.+|.||.|+|...
T Consensus       113 L~~~~~~~~g~~~v~~~~~v~~i~~~~~v~v~~~~~~~g~~~~~~ad~vV~AdG~~S  169 (410)
T 3c96_A          113 LLAAVRERLGQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVGADGIHS  169 (410)
T ss_dssp             HHHHHHHHHCTTSEEESEEEEEEEEETTEEEEEEEETTSCEEEEEESEEEECCCTTC
T ss_pred             HHHHHHhhCCCcEEEECCEEEEEecCCccEEEEecCCCCCceEEecCEEEECCCccc
Confidence            4444444 35 588888 466554 3346666654   6445799999999999875

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=96.73  E-value=0.002  Score=79.64  Aligned_cols=48  Identities=13%  Similarity=0.119  Sum_probs=35.4

Q ss_pred             HHHHhhhCCeEEEee-eEEEec--CCeEEEEeCCCCee-EEEcCeEEEccCCCC
Q psy14927        848 IAHLFKSNKVTQLNG-HGKITG--PNTVTVIKSDGSTE-EVKTKNILIATGSEV  897 (1074)
Q Consensus       848 ~~~~l~~~gV~~~~g-~v~~id--~~~~~v~~~~G~~~-~i~~d~lIIATG~~p  897 (1074)
                      +.+.+.+.|++++.+ +|+.+.  .+.+.|.+.+|  . ++.+|.||+|||...
T Consensus       418 L~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G--~~~i~Ad~VVlAtG~~s  469 (689)
T 3pvc_A          418 LMMLAQQNGMTCHYQHELQRLKRIDSQWQLTFGQS--QAAKHHATVILATGHRL  469 (689)
T ss_dssp             HHHHHHHTTCEEEESCCEEEEEECSSSEEEEEC-C--CCCEEESEEEECCGGGT
T ss_pred             HHHHHHhCCCEEEeCCeEeEEEEeCCeEEEEeCCC--cEEEECCEEEECCCcch
Confidence            445556779999998 577664  44577777777  4 689999999999864

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=96.71  E-value=0.0042  Score=61.05  Aligned_cols=105  Identities=14%  Similarity=0.126  Sum_probs=72.3

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhh
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVR   84 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr   84 (1074)
                      .+.+.|+|++|+..|.++-..+...|.-   .     .+-..+.+...|...|-.+...|+|++|+.+|.+|=      +
T Consensus        20 ~l~~~g~~eeAi~~Y~kAL~l~p~~~~~---~-----a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL------~   85 (159)
T 2hr2_A           20 RQLVAGEYDEAAANCRRAMEISHTMPPE---E-----AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL------H   85 (159)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCTT---S-----CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------H
T ss_pred             HHHHCCCHHHHHHHHHHHHhhCCCCcch---h-----hhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH------H
Confidence            4667899999999999998666432221   0     000000112388889999999999999999997663      2


Q ss_pred             HhhccCCHHHHHHHHHhcCChHHH----HHHHHHHHhcCChHHHHHHHHHh
Q psy14927         85 VLCFLQDFSRAAELANASGDTAAA----YHLARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus        85 ~l~~~~~~~~a~~i~~~~~~~~~~----~~la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                      ++..-+.+        ++.+..+.    +..|..+...|++++|++.|.++
T Consensus        86 l~n~~~e~--------~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA  128 (159)
T 2hr2_A           86 YFNRRGEL--------NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV  128 (159)
T ss_dssp             HHHHHCCT--------TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhccccC--------CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence            21111111        33455567    89999999999999999987654

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=96.70  E-value=0.00067  Score=77.14  Aligned_cols=47  Identities=13%  Similarity=0.045  Sum_probs=35.3

Q ss_pred             HHHHhhhCCeEEEee-eEEEec--CCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        848 IAHLFKSNKVTQLNG-HGKITG--PNTVTVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       848 ~~~~l~~~gV~~~~g-~v~~id--~~~~~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                      +.+.+.+.|++++.+ .|+.+.  .+.+.|.+.+|   ++.+|.||+|||...
T Consensus       160 l~~~a~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g---~i~a~~VV~A~G~~s  209 (381)
T 3nyc_A          160 YLRGIRRNQGQVLCNHEALEIRRVDGAWEVRCDAG---SYRAAVLVNAAGAWC  209 (381)
T ss_dssp             HHHHHHHTTCEEESSCCCCEEEEETTEEEEECSSE---EEEESEEEECCGGGH
T ss_pred             HHHHHHHCCCEEEcCCEEEEEEEeCCeEEEEeCCC---EEEcCEEEECCChhH
Confidence            556667789999988 465553  45566777666   799999999999853

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=96.69  E-value=0.00089  Score=77.00  Aligned_cols=40  Identities=10%  Similarity=0.037  Sum_probs=30.7

Q ss_pred             CeEEEee-eEEEec--CCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        856 KVTQLNG-HGKITG--PNTVTVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       856 gV~~~~g-~v~~id--~~~~~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                      +++++++ +|+.++  .+.++|++.+|  .++.+|.||.|+|...
T Consensus       140 ~~~i~~~~~v~~i~~~~~~v~v~~~~g--~~~~ad~vV~AdG~~S  182 (398)
T 2xdo_A          140 NDTVIWDRKLVMLEPGKKKWTLTFENK--PSETADLVILANGGMS  182 (398)
T ss_dssp             TTSEEESCCEEEEEECSSSEEEEETTS--CCEEESEEEECSCTTC
T ss_pred             CCEEEECCEEEEEEECCCEEEEEECCC--cEEecCEEEECCCcch
Confidence            3567777 576664  34577888888  5799999999999875

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=96.68  E-value=0.031  Score=59.30  Aligned_cols=85  Identities=18%  Similarity=0.167  Sum_probs=66.9

Q ss_pred             cCCChHHHHHHHHHHHhccCHHHHHHHHHHhhCh-----------hhhhhHhhccCCHHHHHHHHHh-----cC---ChH
Q psy14927         46 QSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDY-----------LSMVRVLCFLQDFSRAAELANA-----SG---DTA  106 (1074)
Q Consensus        46 ~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~-----------~~~vr~l~~~~~~~~a~~i~~~-----~~---~~~  106 (1074)
                      ..+++..+-+.|..+...|+|++|...|.++-..           ..+..++..+|++++|....+.     ++   ...
T Consensus        11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~   90 (261)
T 3qky_A           11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ   90 (261)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence            3567888999999999999999999999987432           3455668889999999887662     22   245


Q ss_pred             HHHHHHHHHHh--------cCChHHHHHHHHH
Q psy14927        107 AAYHLARQYEN--------SGQFDEAIHFYSV  130 (1074)
Q Consensus       107 ~~~~la~~~~~--------~g~~~~Ai~~y~~  130 (1074)
                      +.+.+|..+..        .|++++|++.|.+
T Consensus        91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~  122 (261)
T 3qky_A           91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQL  122 (261)
T ss_dssp             HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHH
Confidence            67799999988        8889999888765

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=96.67  E-value=0.0033  Score=61.25  Aligned_cols=77  Identities=14%  Similarity=0.152  Sum_probs=61.2

Q ss_pred             HHHHHHHhccCHHHHHHHHHHhhCh--------hhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhcCCh
Q psy14927         55 WWAQYIESTEDMDLAMKYYEEARDY--------LSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQF  121 (1074)
Q Consensus        55 ~~a~~~e~~~~~~~A~~~y~~a~d~--------~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~g~~  121 (1074)
                      ++|..+.++|+++.|+..|.++-..        ..+.++|..+|++++|.+..+     .+.+..+.+.+|..|...|++
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence            3566777889999999999886443        467888999999999988766     467888999999999999999


Q ss_pred             HHHHHHHHHh
Q psy14927        122 DEAIHFYSVA  131 (1074)
Q Consensus       122 ~~Ai~~y~~a  131 (1074)
                      ++|+++|.++
T Consensus        82 ~~A~~~~~~a   91 (150)
T 4ga2_A           82 DKAVECYRRS   91 (150)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999987653

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=96.64  E-value=0.0039  Score=71.49  Aligned_cols=56  Identities=20%  Similarity=0.265  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEcCEEEEccCCcc
Q psy14927        948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRP 1010 (1074)
Q Consensus       948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p 1010 (1074)
                      ..+...+.+.+++.|++++.++.|+++..+++. ..|.+.+    |   ++.+|.||+|+|...
T Consensus       174 ~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~----g---~~~a~~vV~a~G~~s  230 (405)
T 2gag_B          174 DHVAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTR----G---TIHAGKVALAGAGHS  230 (405)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETT----C---CEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCeEEEEEEeCCEEEEEEeCC----c---eEECCEEEECCchhH
Confidence            467777888889999999999999999876554 3444322    3   699999999999754

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=96.64  E-value=0.0017  Score=75.12  Aligned_cols=56  Identities=9%  Similarity=0.212  Sum_probs=44.8

Q ss_pred             CHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEE-EEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927        947 DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNIT-VTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus       947 ~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~-v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
                      ...+.+.+.+.+++.|++|++++.|++|..+++++. |++ +      +.++.+|.||+++|..
T Consensus       195 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~gv~~-~------g~~~~ad~VV~a~~~~  251 (425)
T 3ka7_A          195 CKGIIDALETVISANGGKIHTGQEVSKILIENGKAAGIIA-D------DRIHDADLVISNLGHA  251 (425)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEE-T------TEEEECSEEEECSCHH
T ss_pred             HHHHHHHHHHHHHHcCCEEEECCceeEEEEECCEEEEEEE-C------CEEEECCEEEECCCHH
Confidence            356778888899999999999999999998766643 432 2      4579999999999864

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=96.63  E-value=0.0076  Score=70.96  Aligned_cols=139  Identities=12%  Similarity=0.054  Sum_probs=87.2

Q ss_pred             HHhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCCh---HHHHHHHHHHHhccCHHHHHHHHHHhhChh
Q psy14927          4 EETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDP---VLLKWWAQYIESTEDMDLAMKYYEEARDYL   80 (1074)
Q Consensus         4 ~~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~   80 (1074)
                      +.+.++|++++|..+|+++.....++    +           ..++|   ..+..+|..+..+|+|++|+.+|.++=+..
T Consensus       317 ~~~~~qg~~~eA~~l~~~aL~~~~~~----l-----------g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~  381 (490)
T 3n71_A          317 DKARSEGLYHEVVKLCRECLEKQEPV----F-----------ADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGY  381 (490)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHTTT----B-----------CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHh----c-----------CCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            34678999999999999987433222    1           11233   356677999999999999999998764431


Q ss_pred             hhhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcC--
Q psy14927         81 SMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAG--  158 (1074)
Q Consensus        81 ~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~--  158 (1074)
                         +-..--+.|+-|          ...+.||..|..+|++++|+.+|.+|-..-+..     +         .++-+  
T Consensus       382 ---~~~lG~~Hp~~a----------~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~-----l---------G~~Hp~~  434 (490)
T 3n71_A          382 ---MKLYHHNNAQLG----------MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVT-----H---------GPSHPIT  434 (490)
T ss_dssp             ---HHHSCTTCHHHH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----T---------CTTSHHH
T ss_pred             ---HHHcCCCCHHHH----------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH-----h---------CCCChHH
Confidence               111112233211          235689999999999999999988765443322     1         12111  


Q ss_pred             chhHHHHHHHHcc-CChhHHHHHHHHh
Q psy14927        159 PSEQIEAATYLET-IEPDKAVLLYHKA  184 (1074)
Q Consensus       159 ~~~~~~~A~~~e~-~~~~~A~~ly~ka  184 (1074)
                      .+.+...++-+.+ +.+.+|-.+|.++
T Consensus       435 ~~~~~~l~~~~~e~~~~~~ae~~~~~~  461 (490)
T 3n71_A          435 KDLEAMRMQTEMELRMFRQNEFMYHKM  461 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1222233443333 6678888888876

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=96.60  E-value=0.005  Score=63.47  Aligned_cols=100  Identities=16%  Similarity=0.172  Sum_probs=63.4

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhc--CCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhh
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQ--SKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSM   82 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~   82 (1074)
                      .+.+.|++++|+.+|+++-..+..-+..++..     . +..  ...+.+...+|..+...|++++|..+|.++=..   
T Consensus        13 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~-----~-~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---   83 (208)
T 3urz_A           13 AAIEAGQNGQAVSYFRQTIALNIDRTEMYYWT-----N-VDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK---   83 (208)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHH-----H-SCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHh-----h-hcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---
Confidence            46678999999999998875542222222110     0 000  011334444788888888888888888664221   


Q ss_pred             hhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927         83 VRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus        83 vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                                        .+.+..+.+.+|..|...|++++|+++|.++
T Consensus        84 ------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  114 (208)
T 3urz_A           84 ------------------APNNVDCLEACAEMQVCRGQEKDALRMYEKI  114 (208)
T ss_dssp             ------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             ------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                              3456677778888888888888888776654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=96.60  E-value=0.0096  Score=73.52  Aligned_cols=128  Identities=18%  Similarity=0.118  Sum_probs=95.9

Q ss_pred             hhcCCHHHHHHHHHHcC--------cccchh-------hhHhh--hcHHHHHHHhhc-----CCChHHHHHHHHHHHhcc
Q psy14927          7 MKNGDIDRAIRMFEKAE--------THQQHV-------PRMLL--ENTDKLEKYIIQ-----SKDPVLLKWWAQYIESTE   64 (1074)
Q Consensus         7 ~~~g~~~eA~~~Ye~~~--------~~~~~~-------~~~~~--~~~~~~~~~~~~-----~~~~~l~~~~a~~~e~~~   64 (1074)
                      ...|++++|++.|+++-        ..+..-       .+.++  ++++++.....+     ++++..|..+|..+...|
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  481 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG  481 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence            35799999999999986        222111       22222  467666665554     678889999999999999


Q ss_pred             CHHHHHHHHHHhhC--------hhhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927         65 DMDLAMKYYEEARD--------YLSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus        65 ~~~~A~~~y~~a~d--------~~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                      ++++|.++|.++=.        +.++..++..+|++++ .+..+     ++.+..+.+.+|..+.+.|++++|++.|.++
T Consensus       482 ~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  560 (681)
T 2pzi_A          482 DYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEV  560 (681)
T ss_dssp             CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence            99999999998642        2455666888888877 54443     4677888999999999999999999999887


Q ss_pred             CChH
Q psy14927        132 GSCG  135 (1074)
Q Consensus       132 ~~~~  135 (1074)
                      -..+
T Consensus       561 l~l~  564 (681)
T 2pzi_A          561 PPTS  564 (681)
T ss_dssp             CTTS
T ss_pred             cccC
Confidence            6544

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=96.59  E-value=0.026  Score=66.35  Aligned_cols=181  Identities=13%  Similarity=0.063  Sum_probs=105.2

Q ss_pred             CCChHHHHHHHHHHHhccCH-HHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHH
Q psy14927         47 SKDPVLLKWWAQYIESTEDM-DLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAI  125 (1074)
Q Consensus        47 ~~~~~l~~~~a~~~e~~~~~-~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai  125 (1074)
                      ..+...+..+|..+...|++ ++|+++|.++=..                     .+.+..+.+.+|..|..+|++++|+
T Consensus        99 ~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~---------------------~p~~~~a~~~lg~~~~~~g~~~~A~  157 (474)
T 4abn_A           99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL---------------------EPELVEAWNQLGEVYWKKGDVTSAH  157 (474)
T ss_dssp             CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH---------------------CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh---------------------CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            45778999999999999999 9999999776332                     2456778889999999999999999


Q ss_pred             HHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHccC-ChhHHHHHHHHhCChHHHHHHHHhhccCCcch
Q psy14927        126 HFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLETI-EPDKAVLLYHKAGALHKALDLAFKLTLSNSGL  204 (1074)
Q Consensus       126 ~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~-~~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~  204 (1074)
                      ++|.++-..+                   +.  ...+...|..+... .    .....+.|++.+|+..+.+.-      
T Consensus       158 ~~~~~al~~~-------------------p~--~~~~~~lg~~~~~~~~----~~~~~~~g~~~~A~~~~~~al------  206 (474)
T 4abn_A          158 TCFSGALTHC-------------------KN--KVSLQNLSMVLRQLQT----DSGDEHSRHVMDSVRQAKLAV------  206 (474)
T ss_dssp             HHHHHHHTTC-------------------CC--HHHHHHHHHHHTTCCC----SCHHHHHHHHHHHHHHHHHHH------
T ss_pred             HHHHHHHhhC-------------------CC--HHHHHHHHHHHHHhcc----CChhhhhhhHHHHHHHHHHHH------
Confidence            9987653322                   11  12222334333321 0    001112355555555544421      


Q ss_pred             HHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcC--CCCCChhHHHHHHHHHHccCCHH----HHHHHHHHH
Q psy14927        205 VFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSS--DWKSQPELLKSIISFYSKGKAPH----LLANFYVSC  278 (1074)
Q Consensus       205 ~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~--~~~~~~~~~~~i~~~Y~k~~~~~----~aa~~~~~~  278 (1074)
                             +  +...             +...|...+..+..+  ....+++.+..++.+|.++-..+    .-...+...
T Consensus       207 -------~--~~p~-------------~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l  264 (474)
T 4abn_A          207 -------Q--MDVL-------------DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNR  264 (474)
T ss_dssp             -------H--HCTT-------------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHH
T ss_pred             -------H--hCCC-------------CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHH
Confidence                   0  0011             112222222222211  00014556666666666655433    234556666


Q ss_pred             HhHHHHhhcCHHHHHHHHHHHHHH
Q psy14927        279 AQVEIDEFGNYEKGLGALNEAKRC  302 (1074)
Q Consensus       279 a~~ei~e~~~y~~a~~~l~~a~~~  302 (1074)
                      +... ...|+|++|...+.+|++.
T Consensus       265 g~~~-~~~g~~~~A~~~~~~al~l  287 (474)
T 4abn_A          265 ATLH-KYEESYGEALEGFSQAAAL  287 (474)
T ss_dssp             HHHH-HHTTCHHHHHHHHHHHHHH
T ss_pred             HHHH-HHcCCHHHHHHHHHHHHHh
Confidence            6666 6778888888888887765

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=96.58  E-value=0.0014  Score=79.05  Aligned_cols=103  Identities=11%  Similarity=0.011  Sum_probs=64.4

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhcccccc------------------------------------------
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGV------------------------------------------  826 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~------------------------------------------  826 (1074)
                      +.+|+||||||+|+++|+.|++     +++|+.+....                                          
T Consensus        49 ~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~  128 (570)
T 3fmw_A           49 TTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGIFTQ  128 (570)
T ss_dssp             --CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTBCTT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCcccc
Confidence            3459999999999999999999     67776543220                                          


Q ss_pred             ccchhhhhhh----hhHHHhhhhhhHHHHhhhCCeEEEee-eEEEec--CCeEEEEe--CCCCeeEEEcCeEEEccCCCC
Q psy14927        827 KLNLETMMGT----KSAAVKALTGGIAHLFKSNKVTQLNG-HGKITG--PNTVTVIK--SDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       827 ~~~~~~~~~~----~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id--~~~~~v~~--~~G~~~~i~~d~lIIATG~~p  897 (1074)
                      .+++......    ..-....+...+.+.+...||+++.+ +|+.+.  .+.++|++  .+|. .++++|+||.|+|...
T Consensus       129 ~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~-~~~~a~~vV~ADG~~S  207 (570)
T 3fmw_A          129 GLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGP-YPVRARYGVGCDGGRS  207 (570)
T ss_dssp             CCBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEE-EEEEESEEEECSCSSC
T ss_pred             cccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCc-EEEEeCEEEEcCCCCc
Confidence            0000000000    00001223334556666679999999 577764  35566766  4552 5799999999999875

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=96.57  E-value=0.0053  Score=57.34  Aligned_cols=65  Identities=17%  Similarity=0.020  Sum_probs=46.8

Q ss_pred             CCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHH
Q psy14927         47 SKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIH  126 (1074)
Q Consensus        47 ~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~  126 (1074)
                      ++++..|..+|..+...|++++|+.+|.++=..                     .+.+..+.+.+|..+...|++++|++
T Consensus        48 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---------------------~P~~~~~~~~la~~~~~~g~~~~A~~  106 (121)
T 1hxi_A           48 PEREEAWRSLGLTQAENEKDGLAIIALNHARML---------------------DPKDIAVHAALAVSHTNEHNANAALA  106 (121)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            344666666677777777777777666544322                     34567788899999999999999999


Q ss_pred             HHHHhC
Q psy14927        127 FYSVAG  132 (1074)
Q Consensus       127 ~y~~a~  132 (1074)
                      .|.++-
T Consensus       107 ~~~~al  112 (121)
T 1hxi_A          107 SLRAWL  112 (121)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            987653

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=96.57  E-value=0.0012  Score=77.75  Aligned_cols=54  Identities=17%  Similarity=0.308  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927        948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus       948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
                      ..+.+.+.+.+.+.|++|++++.|++|..++++ +.|++ +      +.++.+|.||+|++.
T Consensus       234 ~~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~v~~-~------~~~~~ad~vv~a~p~  288 (477)
T 3nks_A          234 EMLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSL-R------DSSLEADHVISAIPA  288 (477)
T ss_dssp             THHHHHHHHHHHHTTCEEECSCCCCEEEECGGGCEEEEC-S------SCEEEESEEEECSCH
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCceEEEEE-C------CeEEEcCEEEECCCH
Confidence            356778888889999999999999999876555 55542 2      236999999999874

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=96.57  E-value=0.016  Score=53.36  Aligned_cols=79  Identities=24%  Similarity=0.386  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHhhC--------hhhhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHHHHHhc
Q psy14927         52 LLKWWAQYIESTEDMDLAMKYYEEARD--------YLSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLARQYENS  118 (1074)
Q Consensus        52 l~~~~a~~~e~~~~~~~A~~~y~~a~d--------~~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~~~~~~  118 (1074)
                      .|..+|..+...|++++|.++|.++-.        +..+..++...|++++|.+..++     +.+......+|..+...
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ   82 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence            456678888999999999999988632        23456667888999999887663     34566777888988889


Q ss_pred             CChHHHHHHHHH
Q psy14927        119 GQFDEAIHFYSV  130 (1074)
Q Consensus       119 g~~~~Ai~~y~~  130 (1074)
                      |++++|+++|.+
T Consensus        83 ~~~~~A~~~~~~   94 (136)
T 2fo7_A           83 GDYDEAIEYYQK   94 (136)
T ss_dssp             TCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHH
Confidence            998888887654

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=96.57  E-value=0.0028  Score=73.75  Aligned_cols=103  Identities=14%  Similarity=0.116  Sum_probs=0.0

Q ss_pred             hhhhhccccchHHHHHHHhh------hhhhhccccc--------------------------------------------
Q psy14927        796 VVLNTLGNCAAVQANYHLAT------KLFTQAGDKG--------------------------------------------  825 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~------~l~e~~~~~g--------------------------------------------  825 (1074)
                      +|||||||++|+++|+.|++      +++|+.+..+                                            
T Consensus         8 dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~   87 (438)
T 3dje_A            8 SLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVPSAISAGNDVNKVISSGQYSNNKDEIEVNEILAEEAFNGWKNDPLF   87 (438)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCSSCTTCTTCSSCEEECCCCSCCCHHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCCCCCCccCCCCccEEEeccCCchhhhcchhHHHHHHHHHHHhhCccc


Q ss_pred             -----------------------------------cccchhhhhhhhhH-H---------------------HhhhhhhH
Q psy14927        826 -----------------------------------VKLNLETMMGTKSA-A---------------------VKALTGGI  848 (1074)
Q Consensus       826 -----------------------------------~~~~~~~~~~~~~~-~---------------------~~~l~~~~  848 (1074)
                                                         ..++...+...... .                     ...+...+
T Consensus        88 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~l~~~~~~g~~g~~~~~~~g~~~~~~~~~~L  167 (438)
T 3dje_A           88 KPYYHDTGLLMSACSQEGLDRLGVRVRPGEDPNLVELTRPEQFRKLAPEGVLQGDFPGWKGYFARSGAGWAHARNALVAA  167 (438)
T ss_dssp             GGGEECCCEEEEECSHHHHHHHHHHHCGGGCTTCEEECSHHHHHTTSCTTTSCSCCTTCEEEEESSSCEEECHHHHHHHH
T ss_pred             cCcEeccceEEEecCcchHHHHHHHHhhcccCCceecCCHHHHHHhCCcccccCCCCCceEEEeCCCCEEecHHHHHHHH


Q ss_pred             HHHhhhCCeEEEee----eEEEe--cCCeEE-EEeCCCCeeEEEcCeEEEccCCCCCCC
Q psy14927        849 AHLFKSNKVTQLNG----HGKIT--GPNTVT-VIKSDGSTEEVKTKNILIATGSEVTPF  900 (1074)
Q Consensus       849 ~~~l~~~gV~~~~g----~v~~i--d~~~~~-v~~~~G~~~~i~~d~lIIATG~~p~~i  900 (1074)
                      .+.+.+.||+|+.+    +|+.+  +.+.+. |.+.+|  .++.+|.||+|||+....+
T Consensus       168 ~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G--~~i~Ad~VV~AtG~~s~~l  224 (438)
T 3dje_A          168 AREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADG--KIWRAERTFLCAGASAGQF  224 (438)
T ss_dssp             HHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTT--EEEECSEEEECCGGGGGGT
T ss_pred             HHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEECCC--CEEECCEEEECCCCChhhh

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=96.54  E-value=0.0013  Score=77.90  Aligned_cols=99  Identities=15%  Similarity=0.159  Sum_probs=64.7

Q ss_pred             hhhhhccccchHHHHHHHhhhhhhhc-----c--cccccc----chhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-e
Q psy14927        796 VVLNTLGNCAAVQANYHLATKLFTQA-----G--DKGVKL----NLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-H  863 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~~l~e~~-----~--~~g~~~----~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~  863 (1074)
                      +|+||||||.|++.|..++. +....     +  .....+    ..+.+.+.   +...+.....+.+++.||+++++ .
T Consensus       219 ~vvVvGgG~tGvE~A~~l~~-~~~~~l~~~~~~~~~~~~V~lve~~~~il~~---~~~~~~~~~~~~L~~~GV~v~~~~~  294 (502)
T 4g6h_A          219 SIVVVGGGPTGVEAAGELQD-YVHQDLRKFLPALAEEVQIHLVEALPIVLNM---FEKKLSSYAQSHLENTSIKVHLRTA  294 (502)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-HHHHTHHHHCHHHHHHCEEEEECSSSSSSTT---SCHHHHHHHHHHHHHTTCEEETTEE
T ss_pred             ceEEECCCcchhhhHHHHHH-HHHHHHHhhcccccccceeEEeccccccccC---CCHHHHHHHHHHHHhcceeeecCce
Confidence            48999999999999998876 11110     0  000000    00111111   12445556778889999999999 5


Q ss_pred             EEEecCCeEEEE--eCCCCe--eEEEcCeEEEccCCCCC
Q psy14927        864 GKITGPNTVTVI--KSDGST--EEVKTKNILIATGSEVT  898 (1074)
Q Consensus       864 v~~id~~~~~v~--~~~G~~--~~i~~d~lIIATG~~p~  898 (1074)
                      |+.++++.+.+.  ..+|..  .++.+|.||+|+|..|+
T Consensus       295 v~~v~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~  333 (502)
T 4g6h_A          295 VAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKAR  333 (502)
T ss_dssp             EEEECSSEEEEEEECTTSCEEEEEEECSEEEECCCEECC
T ss_pred             EEEEeCCceEEEEEecCcccceeeeccCEEEEccCCcCC
Confidence            888988876554  355532  46999999999998874

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=96.51  E-value=0.0024  Score=72.16  Aligned_cols=90  Identities=16%  Similarity=0.093  Sum_probs=60.5

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEec
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITG  868 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id  868 (1074)
                      ++|+|||||+.|+..|..+++     ++++..+.....              ..+...+.+.+++.||+++.+ .++.++
T Consensus       164 ~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~--------------~~~~~~l~~~~~~~gv~i~~~~~v~~i~  229 (360)
T 3ab1_A          164 KRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGH--------------GKTAHEVERARANGTIDVYLETEVASIE  229 (360)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSSC--------------SHHHHSSHHHHHHTSEEEESSEEEEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCCC--------------HHHHHHHHHHhhcCceEEEcCcCHHHhc
Confidence            349999999999999999987     344443322111              111223445566779999999 677775


Q ss_pred             CC--eE-EEEe--CCCCeeEEEcCeEEEccCCCCC
Q psy14927        869 PN--TV-TVIK--SDGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       869 ~~--~~-~v~~--~~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      .+  .+ .|++  .+|+..++.+|.||+|||..|.
T Consensus       230 ~~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~p~  264 (360)
T 3ab1_A          230 ESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSN  264 (360)
T ss_dssp             EETTEEEEEEEEETTCCEEEEECSEEEECCCBCCS
T ss_pred             cCCCceEEEEEEecCCCeEEEeCCEEEECCCCCCC
Confidence            42  21 3444  4675568999999999999874

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=96.51  E-value=0.0071  Score=72.64  Aligned_cols=56  Identities=18%  Similarity=0.294  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHhC-CCEEEeCceEEEEEecCCe--EEEEEeeccCCCCceEEEcCEEEEccCCcc
Q psy14927        948 GEVAKQFQRILGKQ-GMQFKLGTKVTGASKSGDN--ITVTIENVKDPTKKEELSCDALLVCVGRRP 1010 (1074)
Q Consensus       948 ~~~~~~~~~~l~~~-gV~i~~~~~v~~i~~~~~~--~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p 1010 (1074)
                      ..+...+.+.+++. ||+++.+ +|+++..++++  +.|++.+      +.++.+|.||.|+|..+
T Consensus       194 ~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~------G~~i~ad~vI~A~G~~S  252 (550)
T 2e4g_A          194 HLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTAT------GRVFDADLFVDCSGFRG  252 (550)
T ss_dssp             HHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETT------SCEEECSEEEECCGGGC
T ss_pred             HHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECC------CCEEECCEEEECCCCch
Confidence            35677788888888 9999999 99999865444  4454433      45799999999999754

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=96.50  E-value=0.012  Score=56.98  Aligned_cols=83  Identities=14%  Similarity=0.018  Sum_probs=48.4

Q ss_pred             CChHHHHHHHHHHHhccCHHHHHHHHHHhhCh--------hhhhhHhhccCCHHHHHHHHHh-----cCChHHHH--HHH
Q psy14927         48 KDPVLLKWWAQYIESTEDMDLAMKYYEEARDY--------LSMVRVLCFLQDFSRAAELANA-----SGDTAAAY--HLA  112 (1074)
Q Consensus        48 ~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~--------~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~--~la  112 (1074)
                      .++..+..+|..+...|++++|.++|.++-..        ..+..++..+|++++|.+..+.     +.+.....  ..+
T Consensus        45 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~  124 (166)
T 1a17_A           45 SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC  124 (166)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            45677777888888888888888888765332        2333445566666666655542     23333332  233


Q ss_pred             HHHHhcCChHHHHHHHHH
Q psy14927        113 RQYENSGQFDEAIHFYSV  130 (1074)
Q Consensus       113 ~~~~~~g~~~~Ai~~y~~  130 (1074)
                      ..+...|++++|+++|.+
T Consensus       125 ~~~~~~~~~~~A~~~~~~  142 (166)
T 1a17_A          125 NKIVKQKAFERAIAGDEH  142 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccc
Confidence            335555666666665543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=96.49  E-value=0.011  Score=61.61  Aligned_cols=55  Identities=13%  Similarity=0.111  Sum_probs=35.9

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHh
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEA   76 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a   76 (1074)
                      .+.+.|++++|+..|+++-.....                 +...+..+.+.|..+...|+|++|+.+|.++
T Consensus        13 ~~~~~g~~~~A~~~~~~~~~~~p~-----------------~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~   67 (225)
T 2yhc_A           13 QKLQDGNWRQAITQLEALDNRYPF-----------------GPYSQQVQLDLIYAYYKNADLPLAQAAIDRF   67 (225)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTT-----------------STTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC-----------------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            356678888888888876532100                 0111456777788888888888888887774

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=96.49  E-value=0.0094  Score=58.48  Aligned_cols=80  Identities=16%  Similarity=0.076  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHhhCh--------hhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhc
Q psy14927         52 LLKWWAQYIESTEDMDLAMKYYEEARDY--------LSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENS  118 (1074)
Q Consensus        52 l~~~~a~~~e~~~~~~~A~~~y~~a~d~--------~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~  118 (1074)
                      .+...|..+...|+|++|+++|.++=..        ..+..+|..+|++++|.+..+     .+.+..+.+.+|..|...
T Consensus        13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~   92 (164)
T 3sz7_A           13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDM   92 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            3444444444555555555555443221        223333444555555544433     245678889999999999


Q ss_pred             CChHHHHHHHHHh
Q psy14927        119 GQFDEAIHFYSVA  131 (1074)
Q Consensus       119 g~~~~Ai~~y~~a  131 (1074)
                      |++++|+++|.++
T Consensus        93 g~~~~A~~~~~~a  105 (164)
T 3sz7_A           93 ADYKGAKEAYEKG  105 (164)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHH
Confidence            9999999988764

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=96.47  E-value=0.12  Score=49.01  Aligned_cols=93  Identities=13%  Similarity=0.058  Sum_probs=66.9

Q ss_pred             hHHHHHHHHHHccCCHHHHHHHHHHHHhHHHHhhcCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhcCC
Q psy14927        253 ELLKSIISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGN  332 (1074)
Q Consensus       253 ~~~~~i~~~Y~k~~~~~~aa~~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (1074)
                      ..++.++.++...+.....+..+...+... ...|+|++|...+.+++....+.+....   .......+..++.. .|+
T Consensus        70 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~---~~~~~~~la~~~~~-~g~  144 (164)
T 3ro3_A           70 EYYKKTLLLARQLKDRAVEAQSCYSLGNTY-TLLQDYEKAIDYHLKHLAIAQELKDRIG---EGRACWSLGNAYTA-LGN  144 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHHHHH-HTC
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHccchHh---HHHHHHHHHHHHHH-ccC
Confidence            444455555555566666677777888887 8899999999999999999887664211   22233345677777 799


Q ss_pred             hHHHhhHHHHHHHHHhhc
Q psy14927        333 YEKGLGALNEAKRCLLKH  350 (1074)
Q Consensus       333 ~~~a~~~~~~~~~~~~~~  350 (1074)
                      ++.|...+.++-...++.
T Consensus       145 ~~~A~~~~~~a~~~~~~~  162 (164)
T 3ro3_A          145 HDQAMHFAEKHLEISREV  162 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999887765544

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=96.46  E-value=0.0027  Score=72.76  Aligned_cols=46  Identities=17%  Similarity=0.213  Sum_probs=34.7

Q ss_pred             HHHHhhhCCeEEEee-eEEEec--CCeEEEEeCCCCeeEEEcCeEEEccCCC
Q psy14927        848 IAHLFKSNKVTQLNG-HGKITG--PNTVTVIKSDGSTEEVKTKNILIATGSE  896 (1074)
Q Consensus       848 ~~~~l~~~gV~~~~g-~v~~id--~~~~~v~~~~G~~~~i~~d~lIIATG~~  896 (1074)
                      +.+.+.+.|++++.+ .|+.+.  .+.+.|.+.+|   ++.+|.||+|||..
T Consensus       159 l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~v~t~~g---~i~a~~VV~A~G~~  207 (397)
T 2oln_A          159 LFTLAQAAGATLRAGETVTELVPDADGVSVTTDRG---TYRAGKVVLACGPY  207 (397)
T ss_dssp             HHHHHHHTTCEEEESCCEEEEEEETTEEEEEESSC---EEEEEEEEECCGGG
T ss_pred             HHHHHHHcCCEEECCCEEEEEEEcCCeEEEEECCC---EEEcCEEEEcCCcC
Confidence            445556779999998 577664  44566766655   69999999999986

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=96.46  E-value=0.0048  Score=74.12  Aligned_cols=56  Identities=14%  Similarity=0.380  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927        950 VAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus       950 ~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
                      +...+.+.+.+.   +++++++++++.+++++.+++.+.. +|+..++.+|.||.|.|..
T Consensus       140 l~~~L~~~a~~~---v~~~~~v~~~~~~~~~v~v~~~~~~-~G~~~~i~a~~vVgADG~~  195 (549)
T 2r0c_A          140 LAPLLAEAVGER---LRTRSRLDSFEQRDDHVRATITDLR-TGATRAVHARYLVACDGAS  195 (549)
T ss_dssp             HHHHHHHHHGGG---EECSEEEEEEEECSSCEEEEEEETT-TCCEEEEEEEEEEECCCTT
T ss_pred             HHHHHHHHHHHh---cccCcEEEEEEEeCCEEEEEEEECC-CCCEEEEEeCEEEECCCCC
Confidence            445566666665   8899999999987777888877622 2444689999999998864

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=96.46  E-value=0.0017  Score=72.52  Aligned_cols=90  Identities=13%  Similarity=0.083  Sum_probs=61.6

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEec
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITG  868 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id  868 (1074)
                      ++|+|||||+.|+..|..|++     ++++..+....         .     ......+.+.+++.||+++.+ .++.++
T Consensus       153 ~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~---------~-----~~~~~~l~~~l~~~gv~v~~~~~v~~i~  218 (335)
T 2zbw_A          153 KRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRA---------H-----EASVKELMKAHEEGRLEVLTPYELRRVE  218 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCS---------C-----HHHHHHHHHHHHTTSSEEETTEEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCc---------c-----HHHHHHHHhccccCCeEEecCCcceeEc
Confidence            349999999999999999987     44444332211         0     112233556677789999999 577775


Q ss_pred             CCe--EEEEeC---CCCeeEEEcCeEEEccCCCCC
Q psy14927        869 PNT--VTVIKS---DGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       869 ~~~--~~v~~~---~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      .+.  ..|.+.   +|+..++.+|.||+|||.+|.
T Consensus       219 ~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~  253 (335)
T 2zbw_A          219 GDERVRWAVVFHNQTQEELALEVDAVLILAGYITK  253 (335)
T ss_dssp             ESSSEEEEEEEETTTCCEEEEECSEEEECCCEEEE
T ss_pred             cCCCeeEEEEEECCCCceEEEecCEEEEeecCCCC
Confidence            431  234444   665568999999999999874

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=96.45  E-value=0.002  Score=77.91  Aligned_cols=54  Identities=19%  Similarity=0.199  Sum_probs=36.9

Q ss_pred             hhhhHHHHhhhCCeEEEee-eEEEec--C-CeEE-EEeC------CCCe-------eEEEcCeEEEccCCCC
Q psy14927        844 LTGGIAHLFKSNKVTQLNG-HGKITG--P-NTVT-VIKS------DGST-------EEVKTKNILIATGSEV  897 (1074)
Q Consensus       844 l~~~~~~~l~~~gV~~~~g-~v~~id--~-~~~~-v~~~------~G~~-------~~i~~d~lIIATG~~p  897 (1074)
                      +...+.+.+...||+++.| .|+.+.  . ..+. |.+.      +|..       .++.+|+||+|+|...
T Consensus       146 l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S  217 (584)
T 2gmh_A          146 LVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHG  217 (584)
T ss_dssp             HHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTC
T ss_pred             HHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCc
Confidence            3344666677789999999 466653  2 2333 5554      3421       5799999999999975

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=96.44  E-value=0.012  Score=70.63  Aligned_cols=106  Identities=12%  Similarity=0.004  Sum_probs=82.6

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhC-------
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARD-------   78 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d-------   78 (1074)
                      +...|++++|+..|+++-..+                    ++++..+..+|..+...|++++|.++|.++=.       
T Consensus        33 ~~~~g~~~~A~~~~~~al~~~--------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~   92 (568)
T 2vsy_A           33 ELGMGDTTAGEMAVQRGLALH--------------------PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPG   92 (568)
T ss_dssp             HHHHTCHHHHHHHHHHHHTTS--------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC--------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH
Confidence            344566666666666665333                    35678889999999999999999999998632       


Q ss_pred             -hhhhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHHHHHhc---CChHHHHHHHHHh
Q psy14927         79 -YLSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLARQYENS---GQFDEAIHFYSVA  131 (1074)
Q Consensus        79 -~~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~~~~~~---g~~~~Ai~~y~~a  131 (1074)
                       +..+..++..+|++++|.+..++     +.+..+...+|..+...   |++++|+++|.++
T Consensus        93 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a  154 (568)
T 2vsy_A           93 IALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA  154 (568)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence             24566678899999999887763     46778888999999999   9999999987765

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=96.44  E-value=0.012  Score=55.24  Aligned_cols=99  Identities=20%  Similarity=0.246  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHH
Q psy14927         51 VLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSV  130 (1074)
Q Consensus        51 ~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~  130 (1074)
                      .-++.+|..+...|+|++|+++|.+|=+.                     .+.+..+.+.+|..|.+.|++++|++.|.+
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~---------------------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~   67 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL---------------------DPSNITFYNNKAAVYFEEKKFAECVQFCEK   67 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHH
Confidence            35677899999999999999999876322                     345667788999999999999999998754


Q ss_pred             hCChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHcc-CChhHHHHHHHH
Q psy14927        131 AGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLET-IEPDKAVLLYHK  183 (1074)
Q Consensus       131 a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~-~~~~~A~~ly~k  183 (1074)
                            |+++...+...-..  ++     ..+...|..++. +++++|+..|.+
T Consensus        68 ------al~~~~~~~~~~~~--~a-----~~~~~lg~~~~~~~~~~~A~~~~~k  108 (127)
T 4gcn_A           68 ------AVEVGRETRADYKL--IA-----KAMSRAGNAFQKQNDLSLAVQWFHR  108 (127)
T ss_dssp             ------HHHHHHHTTCCHHH--HH-----HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ------HHHhCcccchhhHH--HH-----HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                  55554443211000  00     123345555555 556666666654

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=96.41  E-value=0.0028  Score=70.56  Aligned_cols=31  Identities=16%  Similarity=0.216  Sum_probs=25.8

Q ss_pred             hhhhhhccccchHHHHHHHhh-------hhhhhccccc
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-------KLFTQAGDKG  825 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g  825 (1074)
                      .+|+||||||+|+.+|+.|++       +++|+.+..+
T Consensus        80 ~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~G  117 (344)
T 3jsk_A           80 TDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPG  117 (344)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCC
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccC
Confidence            349999999999999999987       5778776555

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=96.41  E-value=0.0022  Score=72.52  Aligned_cols=96  Identities=17%  Similarity=0.161  Sum_probs=61.1

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccccccc-cchhhhhhhhhHHHhhhhhhHHHHhhhCC-eEEEee-eEEE
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVK-LNLETMMGTKSAAVKALTGGIAHLFKSNK-VTQLNG-HGKI  866 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~-~~~~~~~~~~~~~~~~l~~~~~~~l~~~g-V~~~~g-~v~~  866 (1074)
                      ++|+|||||+.|+..|..|++     ++++..+..... ++.. .     .....+...+.+.+++.| |+++.+ .++.
T Consensus       167 ~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~d~~-~-----~~~~~~~~~l~~~l~~~g~v~~~~~~~v~~  240 (369)
T 3d1c_A          167 GQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPS-V-----RLSPYTRQRLGNVIKQGARIEMNVHYTVKD  240 (369)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECC----------CT-T-----SCCHHHHHHHHHHHHTTCCEEEECSCCEEE
T ss_pred             CEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCC-c-----cCCHHHHHHHHHHHhhCCcEEEecCcEEEE
Confidence            349999999999999999987     455444322110 0000 0     001122334566677786 999998 5777


Q ss_pred             e--cCCeEEEEeCCCCeeEEE-cCeEEEccCCCCC
Q psy14927        867 T--GPNTVTVIKSDGSTEEVK-TKNILIATGSEVT  898 (1074)
Q Consensus       867 i--d~~~~~v~~~~G~~~~i~-~d~lIIATG~~p~  898 (1074)
                      +  +.+...|.+.+|  .++. +|.||+|||..|.
T Consensus       241 i~~~~~~~~v~~~~g--~~~~~~d~vi~a~G~~~~  273 (369)
T 3d1c_A          241 IDFNNGQYHISFDSG--QSVHTPHEPILATGFDAT  273 (369)
T ss_dssp             EEEETTEEEEEESSS--CCEEESSCCEECCCBCGG
T ss_pred             EEecCCceEEEecCC--eEeccCCceEEeeccCCc
Confidence            7  556667778888  3454 6999999999874

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=96.40  E-value=0.0039  Score=74.19  Aligned_cols=45  Identities=22%  Similarity=0.259  Sum_probs=33.9

Q ss_pred             CCeeeCCCCC------CCCCCEEEecccCCCC--------CcHHHHHHHHHHHHHHhhC
Q psy14927       1028 GRVPVNSRFQ------TVIPNIFAIGDCIHGP--------MLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus      1028 G~I~Vd~~~~------ts~~~IyAiGD~~~~~--------~~~~~A~~~G~~aA~~I~~ 1072 (1074)
                      |.|.||+..|      +.+||+||+|.++++.        .....|+--|++|++++++
T Consensus       450 GGl~~d~~~~Vl~~~g~~I~GLyAaGe~~gg~~g~~y~~G~sl~~~~~fGr~Ag~~aa~  508 (510)
T 4at0_A          450 GGLRTTVNSEVLHVSGEPIPGLFAAGRCTSGVCAGGYASGTSLGDGSFYGRRAGISAAK  508 (510)
T ss_dssp             CEECBCTTCEEEBTTSSEEEEEEECGGGBCCSCSSSCCTTHHHHHHHHHHHHHHHHHHC
T ss_pred             cCeeECCCCceECCCCCCcCCeeeceecccCCCcCCCCcHHhHHHHHHHHHHHHHHHHh
Confidence            5566666666      6789999999987631        1345688899999999875

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=96.35  E-value=0.0029  Score=75.80  Aligned_cols=49  Identities=6%  Similarity=0.062  Sum_probs=37.1

Q ss_pred             HHHHhhhCCeEEEeeeEEEecC--C--eEEEEeCCCCeeEEEcCeEEEccCCCCC
Q psy14927        848 IAHLFKSNKVTQLNGHGKITGP--N--TVTVIKSDGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       848 ~~~~l~~~gV~~~~g~v~~id~--~--~~~v~~~~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      +.+.+...||+++.++|+.+..  +  ...|++.+|  .++.+|.||+|+|....
T Consensus       171 L~~~a~~~gv~~~~~~v~~i~~~~~g~~~~v~~~~g--~~i~ad~vV~A~G~~s~  223 (538)
T 2aqj_A          171 LKRWAVERGVNRVVDEVVDVRLNNRGYISNLLTKEG--RTLEADLFIDCSGMRGL  223 (538)
T ss_dssp             HHHHHHHTTCEEEECCEEEEEECTTSCEEEEEETTS--CEECCSEEEECCGGGCC
T ss_pred             HHHHHHHCCCEEEEeeEeEEEEcCCCcEEEEEECCC--cEEEeCEEEECCCCchh
Confidence            4455566899999998887753  2  246777777  57999999999998753

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=96.35  E-value=0.02  Score=53.72  Aligned_cols=85  Identities=19%  Similarity=0.086  Sum_probs=69.9

Q ss_pred             CCChHHHHHHHHHHHhccCHHHHHHHHHHhhC--------hhhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHH
Q psy14927         47 SKDPVLLKWWAQYIESTEDMDLAMKYYEEARD--------YLSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLAR  113 (1074)
Q Consensus        47 ~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d--------~~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~  113 (1074)
                      ..++..+...|..+...|+|++|..+|.++=.        +..+..++..+|++++|....+     .+.+..+.+.+|.
T Consensus         6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   85 (137)
T 3q49_B            6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   85 (137)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence            45678888999999999999999999998533        3455666888999999988766     3567788999999


Q ss_pred             HHHhcCChHHHHHHHHHh
Q psy14927        114 QYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus       114 ~~~~~g~~~~Ai~~y~~a  131 (1074)
                      .|...|++++|+++|.++
T Consensus        86 ~~~~~~~~~~A~~~~~~a  103 (137)
T 3q49_B           86 CQLEMESYDEAIANLQRA  103 (137)
T ss_dssp             HHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHH
Confidence            999999999999987654

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=96.34  E-value=0.0025  Score=70.18  Aligned_cols=87  Identities=18%  Similarity=0.190  Sum_probs=58.1

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEec
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITG  868 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id  868 (1074)
                      ++|+|||+|+.|+..|..+++     ++++..+..         .. ..       ......+++.||+|+.+ .++.++
T Consensus       148 ~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~---------~~-~~-------~~~~~~~~~~gv~~~~~~~v~~i~  210 (315)
T 3r9u_A          148 KEVAVLGGGDTALEEALYLANICSKIYLIHRRDEF---------RA-AP-------STVEKVKKNEKIELITSASVDEVY  210 (315)
T ss_dssp             SEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSC---------BS-CH-------HHHHHHHHCTTEEEECSCEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCC---------CC-CH-------HHHHHHHhcCCeEEEeCcEEEEEE
Confidence            349999999999999999988     333333222         00 01       11233446789999988 566665


Q ss_pred             CCe-----EEEEeCCCCeeEEEcCeEEEccCCCCC
Q psy14927        869 PNT-----VTVIKSDGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       869 ~~~-----~~v~~~~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      .+.     +.+...+|+..++.+|.||+|||..|.
T Consensus       211 ~~~~~~~~v~~~~~~g~~~~~~~D~vv~a~G~~p~  245 (315)
T 3r9u_A          211 GDKMGVAGVKVKLKDGSIRDLNVPGIFTFVGLNVR  245 (315)
T ss_dssp             EETTEEEEEEEECTTSCEEEECCSCEEECSCEEEC
T ss_pred             cCCCcEEEEEEEcCCCCeEEeecCeEEEEEcCCCC
Confidence            432     333334775568999999999999874

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=96.33  E-value=0.0033  Score=75.65  Aligned_cols=62  Identities=10%  Similarity=0.055  Sum_probs=48.6

Q ss_pred             CHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeE-EEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927        947 DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNI-TVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus       947 ~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~-~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
                      +..+...+.+.+.+.|++++.+++|+++..+++++ .|++.+.. +|++.++.+|.||.|+|.-
T Consensus       169 ~~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~~g~v~gV~~~d~~-tg~~~~i~A~~VV~AaG~~  231 (561)
T 3da1_A          169 DARLTLEIMKEAVARGAVALNYMKVESFIYDQGKVVGVVAKDRL-TDTTHTIYAKKVVNAAGPW  231 (561)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEEETT-TCCEEEEEEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCeEEEEEEEEcC-CCceEEEECCEEEECCCcc
Confidence            35566677777888999999999999998876663 47766533 4556789999999999964

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=96.27  E-value=0.023  Score=57.85  Aligned_cols=78  Identities=14%  Similarity=0.135  Sum_probs=63.9

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHhhC-----hhhhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHHHHHhcCChHH
Q psy14927         54 KWWAQYIESTEDMDLAMKYYEEARD-----YLSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLARQYENSGQFDE  123 (1074)
Q Consensus        54 ~~~a~~~e~~~~~~~A~~~y~~a~d-----~~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~~~~~~g~~~~  123 (1074)
                      ...|..+...|++++|.++|.++-+     +..+..++..+|++++|.+..+.     +.+..+.+.+|..|...|++++
T Consensus        10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~   89 (213)
T 1hh8_A           10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDL   89 (213)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHH
Confidence            3458888899999999999998754     34455668889999999887763     5677888899999999999999


Q ss_pred             HHHHHHHh
Q psy14927        124 AIHFYSVA  131 (1074)
Q Consensus       124 Ai~~y~~a  131 (1074)
                      |++.|.++
T Consensus        90 A~~~~~~a   97 (213)
T 1hh8_A           90 AIKDLKEA   97 (213)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99987653

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=96.26  E-value=0.015  Score=63.04  Aligned_cols=86  Identities=16%  Similarity=0.084  Sum_probs=60.2

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhH
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRV   85 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~   85 (1074)
                      +...|++++|+..|+++-..+                    ++++.++..+|..+...|++++|.++|.++-..      
T Consensus        14 ~~~~g~~~~A~~~~~~al~~~--------------------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------   67 (281)
T 2c2l_A           14 LFVGRKYPEAAACYGRAITRN--------------------PLVAVYYTNRALCYLKMQQPEQALADCRRALEL------   67 (281)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC--------------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS------
T ss_pred             HHHcCCHHHHHHHHHHHHHhC--------------------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Confidence            455666777776666654222                    344666677777777777777777776665443      


Q ss_pred             hhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHhC
Q psy14927         86 LCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAG  132 (1074)
Q Consensus        86 l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~  132 (1074)
                                     .+.+..+.+.+|..|...|++++|++.|.++-
T Consensus        68 ---------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   99 (281)
T 2c2l_A           68 ---------------DGQSVKAHFFLGQCQLEMESYDEAIANLQRAY   99 (281)
T ss_dssp             ---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ---------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                           23566788899999999999999999987653

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=96.23  E-value=0.019  Score=51.57  Aligned_cols=87  Identities=18%  Similarity=0.145  Sum_probs=59.0

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhH
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRV   85 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~   85 (1074)
                      +...|++++|+.+|+++-..+                    +.++..+..+|..+...|++++|..+|.++-..      
T Consensus        14 ~~~~~~~~~A~~~~~~~~~~~--------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------   67 (118)
T 1elw_A           14 ALSVGNIDDALQCYSEAIKLD--------------------PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL------   67 (118)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC--------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------
T ss_pred             HHHcccHHHHHHHHHHHHHHC--------------------CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh------
Confidence            345566666666666654221                    234667777777777777777777776654332      


Q ss_pred             hhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHhCC
Q psy14927         86 LCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGS  133 (1074)
Q Consensus        86 l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~  133 (1074)
                                     .+.+....+.+|..+...|++++|+++|.++-.
T Consensus        68 ---------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~  100 (118)
T 1elw_A           68 ---------------KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLK  100 (118)
T ss_dssp             ---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             ---------------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence                           134566788999999999999999998876543

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=96.23  E-value=0.0048  Score=67.87  Aligned_cols=86  Identities=16%  Similarity=0.158  Sum_probs=57.4

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhh-CCeEEEee-eEEEe
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKS-NKVTQLNG-HGKIT  867 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~-~gV~~~~g-~v~~i  867 (1074)
                      ++|+|||||+.|+..|..|++     ++++..+...  .        .        ..+.+.+.. .||+++.+ +++.+
T Consensus       145 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~--------~--------~~~~~~l~~~~gv~v~~~~~v~~i  206 (310)
T 1fl2_A          145 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK--A--------D--------QVLQDKLRSLKNVDIILNAQTTEV  206 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC--S--------C--------HHHHHHHHTCTTEEEESSEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccC--c--------c--------HHHHHHHhhCCCeEEecCCceEEE
Confidence            349999999999999999987     4444433221  0        0        112334455 69999998 57766


Q ss_pred             cCC--eE-EEEeC---CCCeeEEEcCeEEEccCCCCC
Q psy14927        868 GPN--TV-TVIKS---DGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       868 d~~--~~-~v~~~---~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      +.+  .+ .|.+.   +|+..++.+|.||+|||..|.
T Consensus       207 ~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~  243 (310)
T 1fl2_A          207 KGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPN  243 (310)
T ss_dssp             EESSSSEEEEEEEETTTCCEEEEECSEEEECSCEEES
T ss_pred             EcCCCcEEEEEEEECCCCcEEEEEcCEEEEeeCCccC
Confidence            543  22 34443   454467999999999999874

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=96.23  E-value=0.046  Score=56.08  Aligned_cols=74  Identities=14%  Similarity=0.153  Sum_probs=45.4

Q ss_pred             ChHHHHHHHHHHHhccCHHHHHHHHHHhhChh-hhhhHhhc--cCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHH
Q psy14927         49 DPVLLKWWAQYIESTEDMDLAMKYYEEARDYL-SMVRVLCF--LQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAI  125 (1074)
Q Consensus        49 ~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~-~~vr~l~~--~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai  125 (1074)
                      +..-+...|..+...|++++|..+|.++=..+ .-...+..  ...-        ........+.+|..|.+.|++++|+
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~   74 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKN--------SEISSKLATELALAYKKNRNYDKAY   74 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTT--------SHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcch--------hhhhHHHHHHHHHHHHHCCCHHHHH
Confidence            34455666788888999999999998864431 11111110  0000        0001223445899999999999999


Q ss_pred             HHHHH
Q psy14927        126 HFYSV  130 (1074)
Q Consensus       126 ~~y~~  130 (1074)
                      ++|.+
T Consensus        75 ~~~~~   79 (208)
T 3urz_A           75 LFYKE   79 (208)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98865

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=96.22  E-value=0.0012  Score=76.52  Aligned_cols=53  Identities=9%  Similarity=0.174  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927        950 VAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus       950 ~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
                      ....+.......+.++++++.|++|..+++++.|++.+      + ++.+|.||++++..
T Consensus       205 ~~~l~~~l~~~l~~~v~~~~~V~~i~~~~~~v~v~~~~------g-~~~ad~Vv~a~~~~  257 (424)
T 2b9w_A          205 TQAMFEHLNATLEHPAERNVDITRITREDGKVHIHTTD------W-DRESDVLVLTVPLE  257 (424)
T ss_dssp             HHHHHHHHHHHSSSCCBCSCCEEEEECCTTCEEEEESS------C-EEEESEEEECSCHH
T ss_pred             HHHHHHHHHHhhcceEEcCCEEEEEEEECCEEEEEECC------C-eEEcCEEEECCCHH
Confidence            34444444555567889999999998876666665433      2 38999999998864

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=96.22  E-value=0.0033  Score=69.58  Aligned_cols=86  Identities=10%  Similarity=0.078  Sum_probs=57.5

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEec
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITG  868 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id  868 (1074)
                      ++|+|||||+.|+..|..+++     ++++..+...         . .        ..+.+.+.+.||+++.+ +++.++
T Consensus       156 ~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~---------~-~--------~~l~~~l~~~gv~i~~~~~v~~i~  217 (319)
T 3cty_A          156 KRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYM---------C-E--------NAYVQEIKKRNIPYIMNAQVTEIV  217 (319)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCC---------S-C--------HHHHHHHHHTTCCEECSEEEEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccC---------C-C--------HHHHHHHhcCCcEEEcCCeEEEEe
Confidence            349999999999999999987     3443332221         0 0        11334455789999998 577665


Q ss_pred             CCe---EEEEeC---CCCeeEEEcCeEEEccCCCCC
Q psy14927        869 PNT---VTVIKS---DGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       869 ~~~---~~v~~~---~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      .+.   ..+.+.   +|+..++.+|.||+|||..|.
T Consensus       218 ~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~  253 (319)
T 3cty_A          218 GDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQ  253 (319)
T ss_dssp             ESSSSEEEEEEEETTTCCEEEECCSEEEECCCEEEC
T ss_pred             cCCceEEEEEEEEcCCCceEEEecCEEEEeeCCccC
Confidence            431   234443   665457999999999999874

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=96.20  E-value=0.025  Score=51.83  Aligned_cols=61  Identities=16%  Similarity=0.064  Sum_probs=38.8

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHH
Q psy14927         50 PVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYS  129 (1074)
Q Consensus        50 ~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~  129 (1074)
                      +..+..+|..+...|++++|.++|.++-..                     .+.+....+.+|..|...|++++|+++|.
T Consensus        46 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  104 (131)
T 2vyi_A           46 AVYFCNRAAAYSKLGNYAGAVQDCERAICI---------------------DPAYSKAYGRMGLALSSLNKHVEAVAYYK  104 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhchHHHHHHHHHHHhc---------------------CccCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            444555555555555555555555443211                     23456678899999999999999998876


Q ss_pred             Hh
Q psy14927        130 VA  131 (1074)
Q Consensus       130 ~a  131 (1074)
                      ++
T Consensus       105 ~~  106 (131)
T 2vyi_A          105 KA  106 (131)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=96.16  E-value=0.32  Score=52.43  Aligned_cols=83  Identities=12%  Similarity=-0.050  Sum_probs=61.7

Q ss_pred             CCHHHHHHHHHHHHhHHHHhhcCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhcCC-hHHHhhHHHHHH
Q psy14927        266 KAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGN-YEKGLGALNEAK  344 (1074)
Q Consensus       266 ~~~~~aa~~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~  344 (1074)
                      +.....+..+..++..- .+.|+|++|...+.+|++...+.+....   .......+..+|.+ .|+ ++.|+..+.++-
T Consensus       190 ~~~~~~~~~~~nlg~~y-~~~~~y~~A~~~~~~al~~~~~~~~~~~---~~~~~~~lg~~~~~-~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          190 DNEEFDVKVRYNHAKAL-YLDSRYEESLYQVNKAIEISCRINSMAL---IGQLYYQRGECLRK-LEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             CCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTBCTT---HHHHHHHHHHHHHH-TTCCHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHcCcHHH---HHHHHHHHHHHHHH-hCCcHHHHHHHHHHHH
Confidence            34555667788888887 8899999999999999998887765332   12233345667777 685 599999999998


Q ss_pred             HHHhhccCc
Q psy14927        345 RCLLKHNDS  353 (1074)
Q Consensus       345 ~~~~~~~~~  353 (1074)
                      ...+.....
T Consensus       265 ~i~~~~~~~  273 (293)
T 3u3w_A          265 FFFDILEMH  273 (293)
T ss_dssp             HHHHHTTCT
T ss_pred             HHHHHhCCH
Confidence            887766653

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=96.14  E-value=0.12  Score=53.48  Aligned_cols=72  Identities=8%  Similarity=0.035  Sum_probs=47.1

Q ss_pred             HHHHHHHHhHHHHhhcCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhcCChHHHhhHHHHHHHHHhhcc
Q psy14927        272 ANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGNYEKGLGALNEAKRCLLKHN  351 (1074)
Q Consensus       272 a~~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  351 (1074)
                      +......+..- ..-|+|..|...+..+++.....    +  ........+...+.+ .|+++.|+..+.++..   ..|
T Consensus       147 ~~~~~~~a~~~-~~~~~~~~A~~~~~~~l~~~p~~----~--~~~~a~~~l~~~~~~-~g~~~~A~~~~~~l~~---~~~  215 (225)
T 2yhc_A          147 AKYEYSVAEYY-TERGAWVAVVNRVEGMLRDYPDT----Q--ATRDALPLMENAYRQ-MQMNAQAEKVAKIIAA---NSS  215 (225)
T ss_dssp             HHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHSTTS----H--HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH---CCS
T ss_pred             HHHHHHHHHHH-HHcCcHHHHHHHHHHHHHHCcCC----C--ccHHHHHHHHHHHHH-cCCcHHHHHHHHHHHh---hCC
Confidence            33334555555 66899999999988877765432    1  111233355677778 7999999998886654   466


Q ss_pred             Ccc
Q psy14927        352 DSM  354 (1074)
Q Consensus       352 ~~~  354 (1074)
                      +++
T Consensus       216 ~~~  218 (225)
T 2yhc_A          216 NTL  218 (225)
T ss_dssp             CCC
T ss_pred             Cch
Confidence            543

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=96.13  E-value=0.0054  Score=68.04  Aligned_cols=87  Identities=17%  Similarity=0.145  Sum_probs=57.0

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEec
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITG  868 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id  868 (1074)
                      ++|+|||||+.|+..|..+++     ++++..+....          ..    .+   .....+..||+++.+ .++.++
T Consensus       153 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~----------~~----~~---~~~l~~~~gv~i~~~~~v~~i~  215 (325)
T 2q7v_A          153 KKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRA----------NK----VA---QARAFANPKMKFIWDTAVEEIQ  215 (325)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCS----------CH----HH---HHHHHTCTTEEEECSEEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCc----------ch----HH---HHHHHhcCCceEecCCceEEEc
Confidence            349999999999999999987     44444332210          00    11   122233469999998 577765


Q ss_pred             CCe--EEEEeC---CCCeeEEEcCeEEEccCCCCC
Q psy14927        869 PNT--VTVIKS---DGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       869 ~~~--~~v~~~---~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      .+.  ..|.+.   +|+..++.+|.||+|||.+|.
T Consensus       216 ~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~  250 (325)
T 2q7v_A          216 GADSVSGVKLRNLKTGEVSELATDGVFIFIGHVPN  250 (325)
T ss_dssp             ESSSEEEEEEEETTTCCEEEEECSEEEECSCEEES
T ss_pred             cCCcEEEEEEEECCCCcEEEEEcCEEEEccCCCCC
Confidence            431  234443   665558999999999999874

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=96.12  E-value=0.0045  Score=74.04  Aligned_cols=43  Identities=16%  Similarity=0.248  Sum_probs=34.9

Q ss_pred             hhhCCeEEE---eeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCC
Q psy14927        852 FKSNKVTQL---NGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       852 l~~~gV~~~---~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      +.+.||+++   ...+..++++.  |.+++|  .++++|.||+|||..+.
T Consensus       340 l~~~nV~lv~~~~~~I~~it~~g--v~~~dG--~~~~~DvIV~ATGf~~~  385 (540)
T 3gwf_A          340 YNRPNVEAVAIKENPIREVTAKG--VVTEDG--VLHELDVLVFATGFDAV  385 (540)
T ss_dssp             GGSTTEEEEETTTSCEEEECSSE--EEETTC--CEEECSEEEECCCBSCS
T ss_pred             hcCCCEEEEeCCCCCccEEecCe--EEcCCC--CEEECCEEEECCccCcc
Confidence            446799999   56788888875  567888  67999999999999874

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=96.11  E-value=0.0093  Score=54.94  Aligned_cols=86  Identities=12%  Similarity=0.024  Sum_probs=62.4

Q ss_pred             hcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhh
Q psy14927          8 KNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLC   87 (1074)
Q Consensus         8 ~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~   87 (1074)
                      ++|++++|+.+|+++-.....-|.                 ++..+..+|..+...|++++|.++|.++-..        
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~-----------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------   56 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKD-----------------LAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------   56 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHH-----------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCcc-----------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence            468999999999998754211122                 2667888899999999999999999764332        


Q ss_pred             ccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927         88 FLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus        88 ~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                                   .+.+..+.+.+|..+...|++++|+++|.++
T Consensus        57 -------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   87 (117)
T 3k9i_A           57 -------------FPNHQALRVFYAMVLYNLGRYEQGVELLLKI   87 (117)
T ss_dssp             -------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             -------------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                         3456778889999999999999999987654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=96.09  E-value=0.036  Score=63.15  Aligned_cols=100  Identities=9%  Similarity=0.077  Sum_probs=78.9

Q ss_pred             hhhcCC-HHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhC------
Q psy14927          6 TMKNGD-IDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARD------   78 (1074)
Q Consensus         6 ~~~~g~-~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d------   78 (1074)
                      +...|+ +++|+..|+++-..+                    ++++..|..+|..+...|++++|+.+|.++=.      
T Consensus       141 l~~~g~d~~eAl~~~~~al~l~--------------------P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~  200 (382)
T 2h6f_A          141 LKSLQKDLHEEMNYITAIIEEQ--------------------PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNY  200 (382)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHC--------------------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH
T ss_pred             HHHcccCHHHHHHHHHHHHHHC--------------------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCH
Confidence            455675 888888887766333                    45688999999999999999999999998643      


Q ss_pred             --hhhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHh-cCChHHHH
Q psy14927         79 --YLSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYEN-SGQFDEAI  125 (1074)
Q Consensus        79 --~~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~-~g~~~~Ai  125 (1074)
                        |.....+|..+|++++|.+..+     .+.+..+.+.+|..+.. .|..++|+
T Consensus       201 ~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~  255 (382)
T 2h6f_A          201 HAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV  255 (382)
T ss_dssp             HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHH
Confidence              3456667889999999988766     46788899999999998 55558875

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=96.09  E-value=0.0061  Score=69.84  Aligned_cols=40  Identities=15%  Similarity=0.042  Sum_probs=30.7

Q ss_pred             CeEEEee-eEEEe---cCCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        856 KVTQLNG-HGKIT---GPNTVTVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       856 gV~~~~g-~v~~i---d~~~~~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                      +.++.+| +++.+   +...++|+++||  .++++|.||-|-|.+.
T Consensus       123 ~~~v~~~~~v~~~~~~~~~~v~v~~~dG--~~~~adlvVgADG~~S  166 (412)
T 4hb9_A          123 ANTIQWNKTFVRYEHIENGGIKIFFADG--SHENVDVLVGADGSNS  166 (412)
T ss_dssp             TTTEECSCCEEEEEECTTSCEEEEETTS--CEEEESEEEECCCTTC
T ss_pred             cceEEEEEEEEeeeEcCCCeEEEEECCC--CEEEeeEEEECCCCCc
Confidence            4567777 45554   345688999999  6899999999999875

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=96.08  E-value=0.0036  Score=76.60  Aligned_cols=53  Identities=13%  Similarity=0.115  Sum_probs=36.9

Q ss_pred             hhhHHHHhhhCCe--EEEee-eEEEecCC------eEEEEeC------CCCeeEEEcCeEEEccCCCC
Q psy14927        845 TGGIAHLFKSNKV--TQLNG-HGKITGPN------TVTVIKS------DGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       845 ~~~~~~~l~~~gV--~~~~g-~v~~id~~------~~~v~~~------~G~~~~i~~d~lIIATG~~p  897 (1074)
                      ...+.+.+.+.|+  +++.+ +++.+..+      .++|++.      +|...++++|+||.|+|.+.
T Consensus       144 ~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~G~~~~i~a~~vVgADG~~S  211 (639)
T 2dkh_A          144 HDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHAGQIETVQARYVVGCDGARS  211 (639)
T ss_dssp             HHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGTTCEEEEEEEEEEECCCTTC
T ss_pred             HHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCCCCeEEEEeCEEEECCCcch
Confidence            3345666777776  88888 46665421      3666654      46556899999999999975

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=96.06  E-value=0.023  Score=54.90  Aligned_cols=82  Identities=20%  Similarity=0.127  Sum_probs=66.3

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHhhCh--------hhhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHHHHH
Q psy14927         50 PVLLKWWAQYIESTEDMDLAMKYYEEARDY--------LSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLARQYE  116 (1074)
Q Consensus        50 ~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~--------~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~~~~  116 (1074)
                      ...+...|..+...|++++|.++|.++-..        ..+..++..+|++++|.+..+.     +.+..+.+.+|..+.
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            556777899999999999999999986432        3455668889999999887662     456778889999999


Q ss_pred             hcCChHHHHHHHHHh
Q psy14927        117 NSGQFDEAIHFYSVA  131 (1074)
Q Consensus       117 ~~g~~~~Ai~~y~~a  131 (1074)
                      ..|++++|+++|.++
T Consensus        93 ~~~~~~~A~~~~~~a  107 (166)
T 1a17_A           93 ALGKFRAALRDYETV  107 (166)
T ss_dssp             HTTCHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHH
Confidence            999999999887653

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=96.03  E-value=0.0079  Score=74.31  Aligned_cols=93  Identities=15%  Similarity=0.066  Sum_probs=64.8

Q ss_pred             hhhhhhc--cccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEE
Q psy14927        795 QVVLNTL--GNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKI  866 (1074)
Q Consensus       795 ~~VviiG--gG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~  866 (1074)
                      ++|+|||  ||+.|+..|..+++     ++++..+.......           .......+.+.+++.||+++.+ +|+.
T Consensus       524 ~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~-----------~~~~~~~l~~~l~~~GV~i~~~~~V~~  592 (690)
T 3k30_A          524 KKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTN-----------NTFEVNRIQRRLIENGVARVTDHAVVA  592 (690)
T ss_dssp             SEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGG-----------GGTCHHHHHHHHHHTTCEEEESEEEEE
T ss_pred             CEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccccccc-----------cchhHHHHHHHHHHCCCEEEcCcEEEE
Confidence            3499999  99999999999988     34433332211110           0122334567778889999999 6888


Q ss_pred             ecCCeEEEEeC-CCCeeEEEcCeEEEccCCCCC
Q psy14927        867 TGPNTVTVIKS-DGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       867 id~~~~~v~~~-~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      ++.+...+... +|+..++.+|.||+|||.+|.
T Consensus       593 i~~~~~~v~~~~~~~~~~i~aD~VV~A~G~~p~  625 (690)
T 3k30_A          593 VGAGGVTVRDTYASIERELECDAVVMVTARLPR  625 (690)
T ss_dssp             EETTEEEEEETTTCCEEEEECSEEEEESCEEEC
T ss_pred             EECCeEEEEEccCCeEEEEECCEEEECCCCCCC
Confidence            88877766542 344478999999999999874

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=95.98  E-value=0.011  Score=68.82  Aligned_cols=55  Identities=18%  Similarity=0.326  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEe---------------cCCeE-EEEEeeccCCCCceEE--EcCEEEEccCCc
Q psy14927        948 GEVAKQFQRILGKQGMQFKLGTKVTGASK---------------SGDNI-TVTIENVKDPTKKEEL--SCDALLVCVGRR 1009 (1074)
Q Consensus       948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~---------------~~~~~-~v~~~~~~~~g~~~~i--~~D~vi~a~G~~ 1009 (1074)
                      ..+...+.+.+++.||+++.++.|+++..               +++++ .|.+.+    |   ++  .+|.||+|+|.-
T Consensus       181 ~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~----g---~i~~~Ad~VV~AtG~~  253 (448)
T 3axb_A          181 EKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSD----G---TRVEVGEKLVVAAGVW  253 (448)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETT----S---CEEEEEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCC----C---EEeecCCEEEECCCcC
Confidence            46778888889999999999999999986               44433 343322    3   57  999999999964

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=95.97  E-value=0.0067  Score=67.49  Aligned_cols=87  Identities=11%  Similarity=0.127  Sum_probs=57.6

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEec
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITG  868 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id  868 (1074)
                      ++|+|||||+.|+..|..+++     ++++..+....          .    ..+   ....+++.||+++.+ .++.++
T Consensus       160 ~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~----------~----~~~---~~~~~~~~gv~i~~~~~v~~i~  222 (333)
T 1vdc_A          160 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA----------S----KIM---QQRALSNPKIDVIWNSSVVEAY  222 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS----------C----HHH---HHHHHTCTTEEEECSEEEEEEE
T ss_pred             CeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCCc----------c----HHH---HHHHHhCCCeeEecCCceEEEe
Confidence            349999999999999999977     44444332210          0    010   123446789999998 566665


Q ss_pred             CCe----E-EEEeC---CCCeeEEEcCeEEEccCCCCC
Q psy14927        869 PNT----V-TVIKS---DGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       869 ~~~----~-~v~~~---~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      .+.    + .+.+.   +|+..++.+|.||+|||.+|.
T Consensus       223 ~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~  260 (333)
T 1vdc_A          223 GDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPA  260 (333)
T ss_dssp             ESSSSSSEEEEEEEETTTCCEEEEECSEEEECSCEEES
T ss_pred             CCCCccceeeEEEEecCCCceEEEecCEEEEEeCCccc
Confidence            432    2 24443   565568999999999999874

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=95.96  E-value=0.033  Score=51.44  Aligned_cols=84  Identities=19%  Similarity=0.111  Sum_probs=66.7

Q ss_pred             CChHHHHHHHHHHHhccCHHHHHHHHHHhhCh--------hhhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHHH
Q psy14927         48 KDPVLLKWWAQYIESTEDMDLAMKYYEEARDY--------LSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLARQ  114 (1074)
Q Consensus        48 ~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~--------~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~~  114 (1074)
                      .++.-+...|..+...|++++|.++|.++-+.        ..+..++..+|++++|.+..+.     +.+....+.+|..
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~   93 (133)
T 2lni_A           14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA   93 (133)
T ss_dssp             CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            34566777799999999999999999886443        3455667888999999887652     4567788899999


Q ss_pred             HHhcCChHHHHHHHHHh
Q psy14927        115 YENSGQFDEAIHFYSVA  131 (1074)
Q Consensus       115 ~~~~g~~~~Ai~~y~~a  131 (1074)
                      |...|++++|+++|.++
T Consensus        94 ~~~~~~~~~A~~~~~~~  110 (133)
T 2lni_A           94 LEAMKDYTKAMDVYQKA  110 (133)
T ss_dssp             HHHTTCHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHH
Confidence            99999999999988754

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=95.93  E-value=0.0015  Score=69.51  Aligned_cols=37  Identities=14%  Similarity=0.061  Sum_probs=31.5

Q ss_pred             CCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHhh
Q psy14927       1034 SRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1034 ~~~~ts~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                      +.+.++.++||++||++.++ .+..|+.+|..||..|+
T Consensus       288 ~~~~~~~~~v~l~GDa~~g~-gv~~A~~sG~~aA~~I~  324 (336)
T 3kkj_A          288 GALSDADLGIYVCGDWCLSG-RVEGAWLSGQEAARRLL  324 (336)
T ss_dssp             SSEEETTTTEEECCGGGTTS-SHHHHHHHHHHHHHHHH
T ss_pred             cceeeCCCCEEEEecccCCc-CHHHHHHHHHHHHHHHH
Confidence            34556789999999998776 58899999999999986

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.91  E-value=0.2  Score=57.14  Aligned_cols=89  Identities=10%  Similarity=0.033  Sum_probs=61.0

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhHHHHhhcCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhcCChHHHh
Q psy14927        258 IISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGNYEKGL  337 (1074)
Q Consensus       258 i~~~Y~k~~~~~~aa~~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  337 (1074)
                      +.....+...-...+.++...++.. -..|||.+|...|..+.........  |..+...+......++.. .+++..|.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~g~~~~~-~~~y~~A~  236 (434)
T 4b4t_Q          161 LLREFKKLDDKPSLVDVHLLESKVY-HKLRNLAKSKASLTAARTAANSIYC--PTQTVAELDLMSGILHCE-DKDYKTAF  236 (434)
T ss_dssp             HHHHHTTSSCSTHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHSCC--CHHHHHHHHHHHHHHTTS-SSCHHHHH
T ss_pred             HHHHHHhcccchhHHHHHHHHHHHH-HHhCcHHHHHHHHHHHHHHhhcCCC--chHHHHHHHHHHHHHHHH-HHhHHHHH
Confidence            3333344444445567777888887 8899999999999999887765543  334444444455666666 69999999


Q ss_pred             hHHHHHHHHHhhc
Q psy14927        338 GALNEAKRCLLKH  350 (1074)
Q Consensus       338 ~~~~~~~~~~~~~  350 (1074)
                      ..+.++-......
T Consensus       237 ~~~~~a~~~~~~~  249 (434)
T 4b4t_Q          237 SYFFESFESYHNL  249 (434)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhhh
Confidence            9888876654443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=95.91  E-value=0.03  Score=51.76  Aligned_cols=86  Identities=17%  Similarity=0.201  Sum_probs=60.4

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCCh---HHHHHHHHHHHhccCHHHHHHHHHHhhChhh
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDP---VLLKWWAQYIESTEDMDLAMKYYEEARDYLS   81 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~   81 (1074)
                      .+...|++++|+.+|+++-...                    ++++   ..+.+.|..+...|++++|..+|.++-+.  
T Consensus        11 ~~~~~~~~~~A~~~~~~~~~~~--------------------p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--   68 (129)
T 2xev_A           11 DALKNGKYDDASQLFLSFLELY--------------------PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--   68 (129)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC--------------------SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             HHHHhCCHHHHHHHHHHHHHHC--------------------CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--
Confidence            3456777777777777654221                    1223   67778888888888888888888765332  


Q ss_pred             hhhHhhccCCHHHHHHHHHhcCC---hHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927         82 MVRVLCFLQDFSRAAELANASGD---TAAAYHLARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus        82 ~vr~l~~~~~~~~a~~i~~~~~~---~~~~~~la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                                         .+.+   ..+.+.+|..+...|++++|+++|.++
T Consensus        69 -------------------~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  102 (129)
T 2xev_A           69 -------------------YPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQV  102 (129)
T ss_dssp             -------------------CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -------------------CCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                               1123   566789999999999999999987643

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=95.90  E-value=0.029  Score=66.89  Aligned_cols=57  Identities=11%  Similarity=0.206  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHh-CCCEEEeCceEEEEEecCCeE--EEEEeeccCCCCceEEEcCEEEEccCCccc
Q psy14927        948 GEVAKQFQRILGK-QGMQFKLGTKVTGASKSGDNI--TVTIENVKDPTKKEELSCDALLVCVGRRPY 1011 (1074)
Q Consensus       948 ~~~~~~~~~~l~~-~gV~i~~~~~v~~i~~~~~~~--~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~ 1011 (1074)
                      ..+...+.+.+.+ .||+++.+ +|+++..++++.  .|++.+    |  .++.+|.||.|+|....
T Consensus       175 ~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~----g--~~i~ad~vV~AdG~~S~  234 (526)
T 2pyx_A          175 AKFSQLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQ----N--GEISGQLFIDCTGAKSL  234 (526)
T ss_dssp             HHHHHHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESS----S--CEEECSEEEECSGGGCC
T ss_pred             HHHHHHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECC----C--CEEEcCEEEECCCcchH
Confidence            3456677777888 89999999 699998754443  444432    3  35999999999998644

>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B

Probab=95.90  E-value=0.17  Score=57.35  Aligned_cols=134  Identities=12%  Similarity=0.107  Sum_probs=109.8

Q ss_pred             cHHHHHHHHHHhhCHHHHHHHHHHcCCHHHHHHHHHhcCCcHH-HHHHHHHHHhcCC--HHHHHHHHHHcCCHHHHHHH-
Q psy14927        639 DMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAA-AYHLARQYENSGQ--FDEAIHFYSVAGSCGNAVRL-  714 (1074)
Q Consensus       639 ~~~~A~~~y~~ag~~~~ai~~~~~~~~~~~a~~v~~~~~~~~~-~~~~A~~~~~~g~--~~~A~~~~~kag~~~~Av~m-  714 (1074)
                      +.+..+.-.+--|+++.||++..+.+.|-+|+=++-..++.-- .+..-.||.+...  --...=..+-.++..+.|.- 
T Consensus       145 ~~d~~I~~aLl~Gd~e~AV~~cl~~~r~adAllLA~~gg~el~~~~vq~~Y~~k~~~~~~~~rll~~iv~~n~~d~V~~~  224 (399)
T 2pm7_A          145 NIEQTISKNLVSGNIKSAVKNSLENDLMMEAMVIALDSNNERLKESVKNAYFAKYGSKSSLSRILYSISKREVDDLVENL  224 (399)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHTTCCHHHHHHB
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHHHHhcCHHHHHHHHHHHHHHhcccCchHHHHHHHHHccCHHHHHhcC
Confidence            4455666667779999999999999999999999976666666 5567788888764  44455677888999999988 


Q ss_pred             -hccHHHHHHHHHHhCCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHH
Q psy14927        715 -CGQLDAVESIASELNVQS---DQDLILKCASYFARREHHDRAVQMYAIARRYDQALSLIQT  772 (1074)
Q Consensus       715 -a~~w~~a~~~A~~~~~~~---~~~~~~~~a~~~~~~~~~~~Ai~~y~~ag~~~~Ai~~~~~  772 (1074)
                       ..+|.++.-+.=.+.++.   -+.+...+|+.|...|+...|.-||..+|+.+..+.+-..
T Consensus       225 ~l~~WkE~La~i~t~a~~e~~ef~~Lc~~LG~RL~~~g~~~~A~lCYi~Ag~~dk~v~iW~~  286 (399)
T 2pm7_A          225 DVSQWKFISKAIQNLYPNDIAQRNEMMIKLGDRMKENGHRQDSLTLYLAAGSLDKVASIWLS  286 (399)
T ss_dssp             CGGGHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             ChhhHHHHHHHHHhcCCccHhHHHHHHHHHHHHHHhCCChhhhhHHHHhhCCHHHHHHHHHH
Confidence             689999998888887543   3466679999999999999999999999999999888654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=95.87  E-value=0.018  Score=51.38  Aligned_cols=85  Identities=15%  Similarity=0.074  Sum_probs=63.6

Q ss_pred             CChHHHHHHHHHHHhccCHHHHHHHHHHhhC--------hhhhhhHhhccCCHHHHHHHHHh-----cC--ChHHHHHHH
Q psy14927         48 KDPVLLKWWAQYIESTEDMDLAMKYYEEARD--------YLSMVRVLCFLQDFSRAAELANA-----SG--DTAAAYHLA  112 (1074)
Q Consensus        48 ~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d--------~~~~vr~l~~~~~~~~a~~i~~~-----~~--~~~~~~~la  112 (1074)
                      +++..+...|..+...|++++|..+|.++-.        +..+..++..+|++++|.+..+.     +.  +....+.+|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~   83 (112)
T 2kck_A            4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA   83 (112)
T ss_dssp             SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence            3455666778888888888888888877532        23455567778888888776552     34  677888999


Q ss_pred             HHHHhc-CChHHHHHHHHHhC
Q psy14927        113 RQYENS-GQFDEAIHFYSVAG  132 (1074)
Q Consensus       113 ~~~~~~-g~~~~Ai~~y~~a~  132 (1074)
                      ..+... |++++|+++|.++-
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~  104 (112)
T 2kck_A           84 DALRYIEGKEVEAEIAEARAK  104 (112)
T ss_dssp             HHHTTCSSCSHHHHHHHHHHG
T ss_pred             HHHHHHhCCHHHHHHHHHHHh
Confidence            999999 99999999987753

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=95.87  E-value=0.0014  Score=77.61  Aligned_cols=90  Identities=17%  Similarity=0.220  Sum_probs=64.7

Q ss_pred             hhHHhhcCCcEEEEecCCccCCCC---CC-----------------------------HHHHHHHHHHHHhCCCEEEeCc
Q psy14927        922 GSVWGRLGAEVTAIEFMNAIGGMG---ID-----------------------------GEVAKQFQRILGKQGMQFKLGT  969 (1074)
Q Consensus       922 A~~l~~~G~~Vtlv~~~~~~~~~~---~~-----------------------------~~~~~~~~~~l~~~gV~i~~~~  969 (1074)
                      |..|++.|.+|+|+++.+.+....   ..                             ..+...+.+.+++.||++++++
T Consensus       108 A~~La~~G~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~gv~v~~~~  187 (497)
T 2bry_A          108 AVELALLGARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQLLLLKVALLLGVEIHWGV  187 (497)
T ss_dssp             HHHHHHTTCEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHHHHHHHHHHTTCEEEESC
T ss_pred             HHHHHHCCCeEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHHHHHHHHHhCCCEEEeCC
Confidence            778888999999999887653100   01                             4556677778888999999999


Q ss_pred             eEEEEEec---CCeEEEEEeeccCCCCceEEEcCEEEEccCCcccC
Q psy14927        970 KVTGASKS---GDNITVTIENVKDPTKKEELSCDALLVCVGRRPYT 1012 (1074)
Q Consensus       970 ~v~~i~~~---~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 1012 (1074)
                      .|+++..+   ++++.|++.+.. +|+..++.+|.||+|+|..+..
T Consensus       188 ~v~~i~~~~~~~~~~~v~~~~~~-~g~~~~i~ad~VV~A~G~~S~~  232 (497)
T 2bry_A          188 KFTGLQPPPRKGSGWRAQLQPNP-PAQLASYEFDVLISAAGGKFVP  232 (497)
T ss_dssp             EEEEEECCCSTTCCBEEEEESCC-CHHHHTCCBSEEEECCCTTCCC
T ss_pred             EEEEEEEecCCCCEEEEEEEECC-CCCEEEEEcCEEEECCCCCccc
Confidence            99999863   345667664310 1222569999999999988755

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=95.87  E-value=0.032  Score=54.44  Aligned_cols=82  Identities=17%  Similarity=0.140  Sum_probs=66.7

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHhhCh--------------------------hhhhhHhhccCCHHHHHHHHH---
Q psy14927         50 PVLLKWWAQYIESTEDMDLAMKYYEEARDY--------------------------LSMVRVLCFLQDFSRAAELAN---  100 (1074)
Q Consensus        50 ~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~--------------------------~~~vr~l~~~~~~~~a~~i~~---  100 (1074)
                      ...++..|..+...|+|++|+++|.++=+.                          .++..++..+|++++|...++   
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            456777788899999999999999887554                          334556778999999988765   


Q ss_pred             --hcCChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927        101 --ASGDTAAAYHLARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus       101 --~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                        .+.+..+.+.+|..|...|++++|++.|.++
T Consensus        91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a  123 (162)
T 3rkv_A           91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLL  123 (162)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence              3577888999999999999999999988664

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=95.86  E-value=0.073  Score=47.35  Aligned_cols=75  Identities=23%  Similarity=0.348  Sum_probs=59.6

Q ss_pred             cCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHH
Q psy14927         46 QSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAI  125 (1074)
Q Consensus        46 ~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai  125 (1074)
                      .++++..|..+|..+...|++++|.++|.++=..                     .+.+..+.+.+|..|...|++++|+
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------------------~p~~~~a~~~lg~~~~~~g~~~~A~   61 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVET---------------------DPDYVGTYYHLGKLYERLDRTDDAI   61 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------STTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------CCCcHHHHHHHHHHHHHcCCHHHHH
Confidence            3567889999999999999999999999776332                     3456778899999999999999999


Q ss_pred             HHHHHhCChHHHHHHHHHhCch
Q psy14927        126 HFYSVAGSCGNAVRLCKEQALD  147 (1074)
Q Consensus       126 ~~y~~a~~~~~A~~la~~~~~~  147 (1074)
                      ++|.+      |++++...+..
T Consensus        62 ~~~~~------al~l~~~~~~~   77 (100)
T 3ma5_A           62 DTYAQ------GIEVAREEGTQ   77 (100)
T ss_dssp             HHHHH------HHHHHHHHSCH
T ss_pred             HHHHH------HHhhhhcCCch
Confidence            98765      67776666433

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=95.85  E-value=0.049  Score=51.05  Aligned_cols=81  Identities=22%  Similarity=0.111  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHh-----h---CHHHHHHHHHHcCCHHHHHHHHH----h-cCCcHHHHHHHHHHHh
Q psy14927        625 VLLKWWAQYIESTEDMDLAMKYYEEA-----R---DYLSMVRVLCFLQDFSRAAELAN----A-SGDTAAAYHLARQYEN  691 (1074)
Q Consensus       625 ~l~~~~a~~~e~~~~~~~A~~~y~~a-----g---~~~~ai~~~~~~~~~~~a~~v~~----~-~~~~~~~~~~A~~~~~  691 (1074)
                      +.+...|...-..|+|++|+++|.+|     .   -+-..-.+|...++|++|++.++    . ......-..+|..+..
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~   93 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA   93 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence            45566778888889999999999887     2   22344456888889988887663    2 2333444488999999


Q ss_pred             cCCHHHHHHHHHHc
Q psy14927        692 SGQFDEAIHFYSVA  705 (1074)
Q Consensus       692 ~g~~~~A~~~~~ka  705 (1074)
                      .|++++|+++|.++
T Consensus        94 ~~~~~~A~~~~~~a  107 (126)
T 4gco_A           94 MREWSKAQRAYEDA  107 (126)
T ss_dssp             TTCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH
Confidence            99999988888665

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=95.83  E-value=0.034  Score=51.27  Aligned_cols=95  Identities=21%  Similarity=0.234  Sum_probs=69.5

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhCh------
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDY------   79 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~------   79 (1074)
                      +...|++++|+.+|+++-..+                    +.++..+..+|..+...|++++|.++|.++-..      
T Consensus        26 ~~~~~~~~~A~~~~~~al~~~--------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~   85 (133)
T 2lni_A           26 CFQKGDYPQAMKHYTEAIKRN--------------------PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK   85 (133)
T ss_dssp             HHHTTCSHHHHHHHHHHHTTC--------------------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHcCCHHHHHHHHHHHHHcC--------------------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchH
Confidence            456788888888888775433                    234678888899999999999999999875432      


Q ss_pred             --hhhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHHHHHhcCC
Q psy14927         80 --LSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLARQYENSGQ  120 (1074)
Q Consensus        80 --~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~~~~~~g~  120 (1074)
                        ..+..++..+|++++|.+..++     +.+..+...++..+..+|+
T Consensus        86 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           86 GYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence              3345668888999988887652     3456677788888877664

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=95.80  E-value=0.013  Score=64.85  Aligned_cols=31  Identities=16%  Similarity=0.165  Sum_probs=26.4

Q ss_pred             hhhhhccccchHHHHHHHhh-------hhhhhcccccc
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGV  826 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~  826 (1074)
                      +|+||||||+|+.+|+.|++       +++|+.+..|+
T Consensus        67 dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~gg  104 (326)
T 2gjc_A           67 DVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGG  104 (326)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCT
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccc
Confidence            59999999999999999986       57888776654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.80  E-value=0.049  Score=51.38  Aligned_cols=85  Identities=20%  Similarity=0.209  Sum_probs=68.5

Q ss_pred             CCChHHHHHHHHHHHhccCHHHHHHHHHHhhCh-----------hhhhhHhhccCCHHHHHHHHH-----hcCChHHHHH
Q psy14927         47 SKDPVLLKWWAQYIESTEDMDLAMKYYEEARDY-----------LSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYH  110 (1074)
Q Consensus        47 ~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~-----------~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~  110 (1074)
                      ..+...+...|..+...|++++|.++|.++-..           ..+..++..+|++++|.+..+     .+.+..+.+.
T Consensus        25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  104 (148)
T 2dba_A           25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR  104 (148)
T ss_dssp             CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence            345678888899999999999999999986443           234555788999999988765     3457778889


Q ss_pred             HHHHHHhcCChHHHHHHHHHh
Q psy14927        111 LARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus       111 la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                      +|..|...|++++|+++|.++
T Consensus       105 ~a~~~~~~~~~~~A~~~~~~a  125 (148)
T 2dba_A          105 RSQALEKLGRLDQAVLDLQRC  125 (148)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHH
Confidence            999999999999999987654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=95.75  E-value=0.051  Score=51.91  Aligned_cols=68  Identities=21%  Similarity=0.299  Sum_probs=47.4

Q ss_pred             cCHHHHHHHHHHhh---Chhh-hhhHhhccCCHHHHHHHHH---hcCChHHHHHHHHHHHh----cCChHHHHHHHHHh
Q psy14927         64 EDMDLAMKYYEEAR---DYLS-MVRVLCFLQDFSRAAELAN---ASGDTAAAYHLARQYEN----SGQFDEAIHFYSVA  131 (1074)
Q Consensus        64 ~~~~~A~~~y~~a~---d~~~-~vr~l~~~~~~~~a~~i~~---~~~~~~~~~~la~~~~~----~g~~~~Ai~~y~~a  131 (1074)
                      +++++|.++|.++-   +..+ +..+|...+.+++|.+..+   +.++..+++.+|..|..    .+|+++|+++|.++
T Consensus         9 ~d~~~A~~~~~~aa~~g~~~a~lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A   87 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEMFGCLSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKA   87 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTHHHHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCCHhhhHHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Confidence            45666666666642   2222 2333555566666666655   45788999999999998    89999999999877

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=95.75  E-value=0.0072  Score=67.45  Aligned_cols=86  Identities=15%  Similarity=0.176  Sum_probs=57.5

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHH-HHhhhCCeEEEee-eEEEe
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIA-HLFKSNKVTQLNG-HGKIT  867 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~-~~l~~~gV~~~~g-~v~~i  867 (1074)
                      ++|+|||||+.|+..|..+++     ++++..+...         .         ...+. ..+++.||+++.+ .++.+
T Consensus       156 ~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~---------~---------~~~~~~~~~~~~gV~v~~~~~v~~i  217 (335)
T 2a87_A          156 QDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFR---------A---------SKIMLDRARNNDKIRFLTNHTVVAV  217 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCS---------S---------CTTHHHHHHHCTTEEEECSEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCC---------c---------cHHHHHHHhccCCcEEEeCceeEEE
Confidence            349999999999999999987     4444333221         0         01122 3345689999998 57777


Q ss_pred             cCCe----EEEEe-CCCCeeEEEcCeEEEccCCCCC
Q psy14927        868 GPNT----VTVIK-SDGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       868 d~~~----~~v~~-~~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      +.+.    +.+.. .+|+..++.+|.||+|||.+|.
T Consensus       218 ~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~  253 (335)
T 2a87_A          218 DGDTTVTGLRVRDTNTGAETTLPVTGVFVAIGHEPR  253 (335)
T ss_dssp             ECSSSCCEEEEEEETTSCCEEECCSCEEECSCEEEC
T ss_pred             ecCCcEeEEEEEEcCCCceEEeecCEEEEccCCccC
Confidence            6543    33332 2454468999999999999874

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=95.72  E-value=0.0084  Score=68.98  Aligned_cols=51  Identities=14%  Similarity=0.091  Sum_probs=33.1

Q ss_pred             hhhhHHHHhhhCCeEEEee-eEE---------EecC--CeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        844 LTGGIAHLFKSNKVTQLNG-HGK---------ITGP--NTVTVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       844 l~~~~~~~l~~~gV~~~~g-~v~---------~id~--~~~~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                      +...+.+.+.+.|++++.+ +|+         .+..  +.+.|.+.+|   ++.+|.||+|||...
T Consensus       174 l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~~~~v~v~~~~g---~i~a~~VV~A~G~~s  236 (405)
T 3c4n_A          174 LALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTNTHQIVVHETR---QIRAGVIIVAAGAAG  236 (405)
T ss_dssp             HHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC-------CBCCE---EEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHCCCEEEcCCEEEeccccccccceEeeCCeEEEEECCc---EEECCEEEECCCccH
Confidence            3344566667789999988 466         5543  2334444444   799999999999863

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=95.71  E-value=0.0047  Score=72.28  Aligned_cols=40  Identities=30%  Similarity=0.410  Sum_probs=32.7

Q ss_pred             CEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927        963 MQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus       963 V~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
                      ++|++++.|++|+.+++++.|++.+      ++++.+|.||+|++.
T Consensus       248 ~~i~~~~~V~~i~~~~~~~~v~~~~------g~~~~ad~vi~a~p~  287 (470)
T 3i6d_A          248 TKVYKGTKVTKLSHSGSCYSLELDN------GVTLDADSVIVTAPH  287 (470)
T ss_dssp             EEEECSCCEEEEEECSSSEEEEESS------SCEEEESEEEECSCH
T ss_pred             CEEEeCCceEEEEEcCCeEEEEECC------CCEEECCEEEECCCH
Confidence            6999999999999877777776544      457999999999864

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=95.71  E-value=0.034  Score=53.18  Aligned_cols=99  Identities=15%  Similarity=0.085  Sum_probs=66.3

Q ss_pred             CCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHh---hChhhhhhH-
Q psy14927         10 GDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEA---RDYLSMVRV-   85 (1074)
Q Consensus        10 g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a---~d~~~~vr~-   85 (1074)
                      +++++|+++|+++-...                     +....   +|..++..+..+.|.++|.+|   |+......+ 
T Consensus         9 ~d~~~A~~~~~~aa~~g---------------------~~~a~---lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg   64 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN---------------------EMFGC---LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLG   64 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT---------------------CTTHH---HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCC---------------------CHhhh---HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            46788888888875332                     11112   555555555666666666664   333333333 


Q ss_pred             --hhc----cCCHHHHHHHHH---hcCChHHHHHHHHHHHh----cCChHHHHHHHHHhC
Q psy14927         86 --LCF----LQDFSRAAELAN---ASGDTAAAYHLARQYEN----SGQFDEAIHFYSVAG  132 (1074)
Q Consensus        86 --l~~----~~~~~~a~~i~~---~~~~~~~~~~la~~~~~----~g~~~~Ai~~y~~a~  132 (1074)
                        |..    ..|+++|.+..+   +.++..+++.||..|..    .+|+++|+++|.++-
T Consensus        65 ~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa  124 (138)
T 1klx_A           65 DFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC  124 (138)
T ss_dssp             HHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             HHHHcCCCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH
Confidence              444    567777777655   45788999999999999    899999999998863

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=95.64  E-value=0.057  Score=58.28  Aligned_cols=118  Identities=16%  Similarity=0.086  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHh--hCHHHHH-----HHHHHcCCHHHHHHHHHhcCC-------cHHHHHHHHHHH
Q psy14927        625 VLLKWWAQYIESTEDMDLAMKYYEEA--RDYLSMV-----RVLCFLQDFSRAAELANASGD-------TAAAYHLARQYE  690 (1074)
Q Consensus       625 ~l~~~~a~~~e~~~~~~~A~~~y~~a--g~~~~ai-----~~~~~~~~~~~a~~v~~~~~~-------~~~~~~~A~~~~  690 (1074)
                      ++...+|..+...|+|++|.+.|...  +.+...+     .++...++|++|+...+....       .+....++..++
T Consensus       103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~  182 (282)
T 4f3v_A          103 AITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAA  182 (282)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHH
Confidence            68889999999999999999999766  3333321     247899999999999953321       224458899999


Q ss_pred             hcCCHHHHHHHHHHcCCHHHHHHHhccHHHHHHHHHHhCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy14927        691 NSGQFDEAIHFYSVAGSCGNAVRLCGQLDAVESIASELNVQSDQDLILKCASYFARREHHDRAVQMYAIA  760 (1074)
Q Consensus       691 ~~g~~~~A~~~~~kag~~~~Av~ma~~w~~a~~~A~~~~~~~~~~~~~~~a~~~~~~~~~~~Ai~~y~~a  760 (1074)
                      ..|++++|+.+|-++..                  ..+.|....+....+|.-|...|+.++|..+|.+.
T Consensus       183 ~LG~~~eAl~~l~~a~~------------------g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a  234 (282)
T 4f3v_A          183 NLALFTEAERRLTEAND------------------SPAGEACARAIAWYLAMARRSQGNESAAVALLEWL  234 (282)
T ss_dssp             HTTCHHHHHHHHHHHHT------------------STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHhc------------------CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999999987621                  01113334567778888888889999888888655

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=95.63  E-value=0.049  Score=60.66  Aligned_cols=81  Identities=19%  Similarity=0.249  Sum_probs=61.2

Q ss_pred             hhHHhhcCCcEEEEecCCccCC--------------------CCCC-----------HHHHHHHHHHHHhCCCEEEeCce
Q psy14927        922 GSVWGRLGAEVTAIEFMNAIGG--------------------MGID-----------GEVAKQFQRILGKQGMQFKLGTK  970 (1074)
Q Consensus       922 A~~l~~~G~~Vtlv~~~~~~~~--------------------~~~~-----------~~~~~~~~~~l~~~gV~i~~~~~  970 (1074)
                      |..|++.|.+|+|+++.+.+..                    +.++           ..+...+.+.+++.|++++.++.
T Consensus        19 A~~l~~~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   98 (357)
T 4a9w_A           19 GYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYLAQYEQKYALPVLRPIR   98 (357)
T ss_dssp             HHHHHHSSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHHHHHHHHTTCCEECSCC
T ss_pred             HHHHHHCCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHHHHHHHHcCCEEEcCCE
Confidence            5667788999999998765310                    1110           57778888888999999999999


Q ss_pred             EEEEEecCCeEE-EEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927        971 VTGASKSGDNIT-VTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus       971 v~~i~~~~~~~~-v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
                      |+.+..+++... |++.+      + ++.+|.||+|+|..
T Consensus        99 v~~i~~~~~~~~~v~~~~------g-~~~~d~vV~AtG~~  131 (357)
T 4a9w_A           99 VQRVSHFGERLRVVARDG------R-QWLARAVISATGTW  131 (357)
T ss_dssp             EEEEEEETTEEEEEETTS------C-EEEEEEEEECCCSG
T ss_pred             EEEEEECCCcEEEEEeCC------C-EEEeCEEEECCCCC
Confidence            999998777655 54322      3 79999999999963

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=95.62  E-value=0.054  Score=48.99  Aligned_cols=82  Identities=24%  Similarity=0.387  Sum_probs=63.0

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHhhC--------hhhhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHHHHH
Q psy14927         50 PVLLKWWAQYIESTEDMDLAMKYYEEARD--------YLSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLARQYE  116 (1074)
Q Consensus        50 ~~l~~~~a~~~e~~~~~~~A~~~y~~a~d--------~~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~~~~  116 (1074)
                      ...+..+|..+...|++++|.++|.++-.        +..+..++...|++++|....+.     +.+......+|..|.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            55677778888888999999888887632        23455667788888888877652     456677889999999


Q ss_pred             hcCChHHHHHHHHHh
Q psy14927        117 NSGQFDEAIHFYSVA  131 (1074)
Q Consensus       117 ~~g~~~~Ai~~y~~a  131 (1074)
                      ..|++++|+++|.++
T Consensus        89 ~~~~~~~A~~~~~~~  103 (125)
T 1na0_A           89 KQGDYDEAIEYYQKA  103 (125)
T ss_dssp             HTTCHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHH
Confidence            999999999887654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=95.60  E-value=0.035  Score=65.33  Aligned_cols=114  Identities=15%  Similarity=0.049  Sum_probs=68.1

Q ss_pred             HHhhhcHHHHHHHHHHh----------------hCHHHHHHHHHHcCCHHHHHHHHH----------hcCCcHH--HH-H
Q psy14927        634 IESTEDMDLAMKYYEEA----------------RDYLSMVRVLCFLQDFSRAAELAN----------ASGDTAA--AY-H  684 (1074)
Q Consensus       634 ~e~~~~~~~A~~~y~~a----------------g~~~~ai~~~~~~~~~~~a~~v~~----------~~~~~~~--~~-~  684 (1074)
                      +..+|+|++|+.+|.++                .-..+....|..+++|++|..+.+          ..+.++.  ++ .
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            44556666666666555                223344445566666666654442          1222333  33 8


Q ss_pred             HHHHHHhcCCHHHHHHHHHHcCCHHHHHHHhccHHHHHHHHHHhCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy14927        685 LARQYENSGQFDEAIHFYSVAGSCGNAVRLCGQLDAVESIASELNVQSDQDLILKCASYFARREHHDRAVQMYAIA  760 (1074)
Q Consensus       685 ~A~~~~~~g~~~~A~~~~~kag~~~~Av~ma~~w~~a~~~A~~~~~~~~~~~~~~~a~~~~~~~~~~~Ai~~y~~a  760 (1074)
                      +|..+...|+|++|+.+|.+|-.+.+.+           +...|  +.+.+++..+++.....+++.+|..+|.++
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~~~-----------lG~~H--p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~  461 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILLVT-----------HGPSH--PITKDLEAMRMQTEMELRMFRQNEFMYHKM  461 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHH-----------TCTTS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHH-----------hCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999998774442221           12222  233355556666666677778888888776

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=95.59  E-value=0.0063  Score=71.69  Aligned_cols=107  Identities=16%  Similarity=0.080  Sum_probs=71.5

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhCh------
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDY------   79 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~------   79 (1074)
                      +.++|++++|+++|+++-..+                    ++++..+..+|..+...|++++|+++|.++=..      
T Consensus        16 ~~~~g~~~~A~~~~~~Al~~~--------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~   75 (477)
T 1wao_1           16 YFKAKDYENAIKFYSQAIELN--------------------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK   75 (477)
T ss_dssp             TTTTTCHHHHHHHHHHHHHHC--------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH
T ss_pred             HHHhCCHHHHHHHHHHHHHhC--------------------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH
Confidence            457899999999999886332                    445788889999999999999999999886332      


Q ss_pred             --hhhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHHH--HHhcCChHHHHHHHHHhC
Q psy14927         80 --LSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLARQ--YENSGQFDEAIHFYSVAG  132 (1074)
Q Consensus        80 --~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~~--~~~~g~~~~Ai~~y~~a~  132 (1074)
                        ..+..+|..+|++++|.+..++     +.+..+...++..  +.++|++++|+++|.+..
T Consensus        76 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~  137 (477)
T 1wao_1           76 GYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR  137 (477)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence              3445556777777777666552     3444555555555  666677777777666443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=95.58  E-value=0.046  Score=55.34  Aligned_cols=82  Identities=21%  Similarity=0.193  Sum_probs=66.9

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHhhC------------------------hhhhhhHhhccCCHHHHHHHHH-----
Q psy14927         50 PVLLKWWAQYIESTEDMDLAMKYYEEARD------------------------YLSMVRVLCFLQDFSRAAELAN-----  100 (1074)
Q Consensus        50 ~~l~~~~a~~~e~~~~~~~A~~~y~~a~d------------------------~~~~vr~l~~~~~~~~a~~i~~-----  100 (1074)
                      ...+...|..+...|+|++|.++|.++-.                        +..+..++..+|++++|.+..+     
T Consensus        38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  117 (198)
T 2fbn_A           38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI  117 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            44667779999999999999999998753                        2345566888999999988776     


Q ss_pred             hcCChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927        101 ASGDTAAAYHLARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus       101 ~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                      .+.+..+.+.+|..|...|++++|+++|.++
T Consensus       118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  148 (198)
T 2fbn_A          118 DKNNVKALYKLGVANMYFGFLEEAKENLYKA  148 (198)
T ss_dssp             STTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            3567788899999999999999999988654

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=95.57  E-value=0.0036  Score=77.89  Aligned_cols=42  Identities=29%  Similarity=0.412  Sum_probs=34.3

Q ss_pred             CCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927        961 QGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus       961 ~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
                      .|++|++++.|++|..+++++.|++.+      +.++.+|.||+|++.
T Consensus       542 ~gl~I~l~t~V~~I~~~~~~v~V~~~~------G~~i~Ad~VIvA~P~  583 (776)
T 4gut_A          542 EGLDIQLKSPVQCIDYSGDEVQVTTTD------GTGYSAQKVLVTVPL  583 (776)
T ss_dssp             TTSCEESSCCEEEEECSSSSEEEEETT------CCEEEESEEEECCCH
T ss_pred             hCCcEEcCCeeEEEEEcCCEEEEEECC------CcEEEcCEEEECCCH
Confidence            479999999999999877777776544      357999999999853

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=95.51  E-value=0.012  Score=70.37  Aligned_cols=43  Identities=12%  Similarity=0.173  Sum_probs=33.7

Q ss_pred             HhhhCCeEEE---eeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCC
Q psy14927        851 LFKSNKVTQL---NGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       851 ~l~~~gV~~~---~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      .+.+.+|+++   ...+..+++..+  .+++|   ++.+|.||+|||..+.
T Consensus       352 al~~~~V~lvd~~~~~I~~it~~gv--~~~dG---~~~~D~iI~ATGf~~~  397 (549)
T 4ap3_A          352 TYNRDNVELVDLRSTPIVGMDETGI--VTTGA---HYDLDMIVLATGFDAM  397 (549)
T ss_dssp             GGGSTTEEEEETTTSCEEEEETTEE--EESSC---EEECSEEEECCCEEES
T ss_pred             HhcCCCEEEEeCCCCCceEEeCCcE--EeCCC---ceecCEEEECCccccc
Confidence            3455689998   777888888754  45777   6899999999998764

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=95.49  E-value=0.012  Score=69.73  Aligned_cols=101  Identities=10%  Similarity=0.002  Sum_probs=0.0

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhh------------------------------------
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMM------------------------------------  834 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~------------------------------------  834 (1074)
                      +|+|||||++|+++|+.|++     +++|+.+..++......-.                                    
T Consensus         5 DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~~~~gtS~~s~gli~~g~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~   84 (501)
T 2qcu_A            5 DLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACATSSASSKLIHGGLRYLEHYEFRLVSEALAEREVLLKMAPHIAFP   84 (501)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCSGGGSSCCEECCCGGGGGGTCHHHHHHHHHHHHHHHHHCTTTEEE
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEECCCCCCCccccccccccccchhhhhchHHHHHHHHHHHHHHHHhCCccccc


Q ss_pred             --------------------------------------------hhhhH-------------HHhhhhhhHHHHhhhCCe
Q psy14927        835 --------------------------------------------GTKSA-------------AVKALTGGIAHLFKSNKV  857 (1074)
Q Consensus       835 --------------------------------------------~~~~~-------------~~~~l~~~~~~~l~~~gV  857 (1074)
                                                                  +....             ....+...+...+.+.|+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~P~l~~~~~~~~~~~~g~v~~~~l~~~l~~~a~~~Gv  164 (501)
T 2qcu_A           85 MRFRLPHRPHLRPAWMIRIGLFMYDHLGKRTSLPGSTGLRFGANSVLKPEIKRGFEYSDCWVDDARLVLANAQMVVRKGG  164 (501)
T ss_dssp             EEEEEECCTTTSCHHHHHHHHHHHHSSSCCSSSCCCEEEECCTTSSBCTTCCEEEEEEEEEECHHHHHHHHHHHHHHTTC
T ss_pred             cCeEeccCcccchHHHHHHHHHHHHhcCCcEEECHHHHHHhhcCCCcchhceEEEEeeCCEEcHHHHHHHHHHHHHHcCC


Q ss_pred             EEEee-eEEEe--cCCeEEEEe---CCCCeeEEEcCeEEEccCCC
Q psy14927        858 TQLNG-HGKIT--GPNTVTVIK---SDGSTEEVKTKNILIATGSE  896 (1074)
Q Consensus       858 ~~~~g-~v~~i--d~~~~~v~~---~~G~~~~i~~d~lIIATG~~  896 (1074)
                      +++.+ +|+.+  +.....|++   .+|+..++.+|.||+|||..
T Consensus       165 ~i~~~~~V~~l~~~~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~  209 (501)
T 2qcu_A          165 EVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPW  209 (501)
T ss_dssp             EEECSEEEEEEEEETTEEEEEEEETTTCCEEEEEESCEEECCGGG
T ss_pred             EEEcCcEEEEEEEeCCEEEEEEEECCCCCEEEEECCEEEECCChh

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=95.42  E-value=0.016  Score=68.97  Aligned_cols=86  Identities=17%  Similarity=0.146  Sum_probs=57.7

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhh-CCeEEEee-eEEEe
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKS-NKVTQLNG-HGKIT  867 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~-~gV~~~~g-~v~~i  867 (1074)
                      ++|+|||||+.|+.+|..|++     ++++..+....         .         ..+.+.+.+ .||+++.+ .++.+
T Consensus       356 k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~---------~---------~~l~~~l~~~~gV~v~~~~~v~~i  417 (521)
T 1hyu_A          356 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA---------D---------QVLQDKVRSLKNVDIILNAQTTEV  417 (521)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCS---------C---------HHHHHHHTTCTTEEEECSEEEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCc---------C---------HHHHHHHhcCCCcEEEeCCEEEEE
Confidence            459999999999999999988     44444332210         0         113344555 59999999 56666


Q ss_pred             cCC--eE-EEEeC---CCCeeEEEcCeEEEccCCCCC
Q psy14927        868 GPN--TV-TVIKS---DGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       868 d~~--~~-~v~~~---~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      ..+  .+ .+.+.   +|+..++.+|.||+|+|..|.
T Consensus       418 ~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn  454 (521)
T 1hyu_A          418 KGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPN  454 (521)
T ss_dssp             EECSSSEEEEEEEETTTCCEEEEECSEEEECCCEEES
T ss_pred             EcCCCcEEEEEEEeCCCCceEEEEcCEEEECcCCCCC
Confidence            542  22 34433   465567999999999999874

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=95.39  E-value=0.0098  Score=58.30  Aligned_cols=87  Identities=18%  Similarity=0.207  Sum_probs=62.4

Q ss_pred             HHhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHH----------HHHHHH
Q psy14927          4 EETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMD----------LAMKYY   73 (1074)
Q Consensus         4 ~~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~----------~A~~~y   73 (1074)
                      .++++.++|++|++.|+++-..+                    ++++..|..||..+.+.++++          +|+.+|
T Consensus        10 ~~~~r~~~feeA~~~~~~Ai~l~--------------------P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~l   69 (158)
T 1zu2_A           10 TEFDRILLFEQIRQDAENTYKSN--------------------PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKF   69 (158)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHC--------------------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHhHHHHHHHHHHHHHHHC--------------------CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHH
Confidence            46778888999999888876333                    567889999999998888765          444444


Q ss_pred             HHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcC-----------ChHHHHHHHHHh
Q psy14927         74 EEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSG-----------QFDEAIHFYSVA  131 (1074)
Q Consensus        74 ~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g-----------~~~~Ai~~y~~a  131 (1074)
                      .+|=..                     +++...+.+.+|..|.++|           ++++|+++|.+|
T Consensus        70 e~AL~l---------------------dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kA  117 (158)
T 1zu2_A           70 EEALLI---------------------DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQA  117 (158)
T ss_dssp             HHHHHH---------------------CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHh---------------------CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHH
Confidence            333222                     4567778888998888775           788888866543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=95.39  E-value=0.057  Score=62.42  Aligned_cols=100  Identities=11%  Similarity=0.007  Sum_probs=67.5

Q ss_pred             hcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChH---HHHHHHHHHHhccCHHHHHHHHHHhhChhhhhh
Q psy14927          8 KNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPV---LLKWWAQYIESTEDMDLAMKYYEEARDYLSMVR   84 (1074)
Q Consensus         8 ~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr   84 (1074)
                      +.|+++||..+|+++.....++    +           ..++|.   .+..+|..+..+|+|++|+.+|.++=+.   .+
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~----l-----------g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i---~~  371 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSV----F-----------EDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKP---YS  371 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTT----B-----------CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HH
T ss_pred             hccCHHHHHHHHHHHHHHhhCc----c-----------ChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH---HH
Confidence            4688999999999887333221    1           122333   4556799999999999999999887333   11


Q ss_pred             HhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHhCChH
Q psy14927         85 VLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCG  135 (1074)
Q Consensus        85 ~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~  135 (1074)
                      -..--+.|+-|          ...+.||..|..+|++++|+.+|.+|-..-
T Consensus       372 ~~lG~~Hp~~a----------~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~  412 (433)
T 3qww_A          372 KHYPVYSLNVA----------SMWLKLGRLYMGLENKAAGEKALKKAIAIM  412 (433)
T ss_dssp             HHSCSSCHHHH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHcCCCChHHH----------HHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence            11122234222          235589999999999999999998765443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=95.37  E-value=0.043  Score=50.23  Aligned_cols=81  Identities=22%  Similarity=0.362  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHhhCh--------hhhhhHhhccCCHHHHHHHHHh-----cCC-------hHHHHH
Q psy14927         51 VLLKWWAQYIESTEDMDLAMKYYEEARDY--------LSMVRVLCFLQDFSRAAELANA-----SGD-------TAAAYH  110 (1074)
Q Consensus        51 ~l~~~~a~~~e~~~~~~~A~~~y~~a~d~--------~~~vr~l~~~~~~~~a~~i~~~-----~~~-------~~~~~~  110 (1074)
                      ..+...|..+...|++++|..+|.++-..        ..+..++...|++++|....+.     +.+       ....+.
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence            34555566666666666666666654221        2334445556666666555442     112       556789


Q ss_pred             HHHHHHhcCChHHHHHHHHHh
Q psy14927        111 LARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus       111 la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                      +|..+...|++++|+++|.++
T Consensus        85 la~~~~~~~~~~~A~~~~~~~  105 (131)
T 1elr_A           85 IGNSYFKEEKYKDAIHFYNKS  105 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHH
Confidence            999999999999999987654

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=95.36  E-value=0.0076  Score=74.25  Aligned_cols=51  Identities=20%  Similarity=0.268  Sum_probs=40.3

Q ss_pred             hHHHHhhhCCeEEEee-eEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCC
Q psy14927        847 GIAHLFKSNKVTQLNG-HGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       847 ~~~~~l~~~gV~~~~g-~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      .+...+++.||+++.+ .++.++.+.+.+. .+|+..++.+|.||+|||.+|.
T Consensus       578 ~~~~~l~~~GV~v~~~~~v~~i~~~~v~~~-~~G~~~~i~~D~Vi~a~G~~p~  629 (671)
T 1ps9_A          578 IHRTTLLSRGVKMIPGVSYQKIDDDGLHVV-INGETQVLAVDNVVICAGQEPN  629 (671)
T ss_dssp             HHHHHHHHTTCEEECSCEEEEEETTEEEEE-ETTEEEEECCSEEEECCCEEEC
T ss_pred             HHHHHHHhcCCEEEeCcEEEEEeCCeEEEe-cCCeEEEEeCCEEEECCCcccc
Confidence            3466778899999999 5778887766554 5665568999999999999974

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=95.34  E-value=0.099  Score=50.85  Aligned_cols=83  Identities=11%  Similarity=0.099  Sum_probs=65.1

Q ss_pred             hHHHHHHHHHHHHhhhcHHHHHHHHHHh--------hCHHHHHHHHHHcCCHHHHHHHHH-----hcCCcHHHHHHHHHH
Q psy14927        623 YRVLLKWWAQYIESTEDMDLAMKYYEEA--------RDYLSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQY  689 (1074)
Q Consensus       623 ~~~l~~~~a~~~e~~~~~~~A~~~y~~a--------g~~~~ai~~~~~~~~~~~a~~v~~-----~~~~~~~~~~~A~~~  689 (1074)
                      +++.+...|..+-..|+|++|+.+|.++        .-|-..-.+|...+++++|++..+     ..+.......+|..+
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~  114 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ  114 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence            3467788888899999999999999987        223344466889999999987663     345566666999999


Q ss_pred             HhcCCHHHHHHHHHHc
Q psy14927        690 ENSGQFDEAIHFYSVA  705 (1074)
Q Consensus       690 ~~~g~~~~A~~~~~ka  705 (1074)
                      ...|++++|+.+|-++
T Consensus       115 ~~lg~~~eA~~~~~~a  130 (151)
T 3gyz_A          115 LRLKAPLKAKECFELV  130 (151)
T ss_dssp             HHTTCHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHH
Confidence            9999999999998765

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=95.32  E-value=0.049  Score=60.72  Aligned_cols=115  Identities=14%  Similarity=0.026  Sum_probs=75.0

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhCh------
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDY------   79 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~------   79 (1074)
                      +...|++++|+..|+++-.....-+..-......+..+     ...++..+|..+...|++++|+++|.++=..      
T Consensus       157 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~-----~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~  231 (336)
T 1p5q_A          157 YFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL-----RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEK  231 (336)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHH-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence            45678888888888887644322111000001111111     1468888899999999999999999986432      


Q ss_pred             --hhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhcCChHHHH
Q psy14927         80 --LSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQFDEAI  125 (1074)
Q Consensus        80 --~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~g~~~~Ai  125 (1074)
                        ..+..+|..+|++++|.+..+     .+.+..+.+.++..+...|++++|.
T Consensus       232 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~  284 (336)
T 1p5q_A          232 GLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE  284 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence              345555777888888776654     3456677777888888888777773

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=95.30  E-value=1.1  Score=54.67  Aligned_cols=94  Identities=11%  Similarity=0.079  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHhcCCChhhHHHhhhhcc---------------------------hHHHHHHHHHHHhcCCCCCChhHHHH
Q psy14927        205 VFQIKAMKCLLKSGDTNKIIFFAGVSR---------------------------MKEIYVMAANYLQSSDWKSQPELLKS  257 (1074)
Q Consensus       205 ~~~~~a~k~l~~~~~~~~~i~~a~~~r---------------------------~~~l~~~aa~yl~~~~~~~~~~~~~~  257 (1074)
                      ..|+...+...+.|+.+++-.+-..+.                           ...+|+..+++....      ..+..
T Consensus       379 ~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~------~~l~~  452 (679)
T 4e6h_A          379 VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRI------QGLAA  452 (679)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH------HCHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHc------CCHHH
Confidence            456666677777777766543333322                           234677778777654      22334


Q ss_pred             HHHHHHccCCH-H-HHHHHHHHHHhHHHHhhcCHHHHHHHHHHHHHHHH
Q psy14927        258 IISFYSKGKAP-H-LLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLL  304 (1074)
Q Consensus       258 i~~~Y~k~~~~-~-~aa~~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~  304 (1074)
                      +-..|.++.+. . .....|...|..|..-.++++.|..++..+++.+.
T Consensus       453 AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p  501 (679)
T 4e6h_A          453 SRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA  501 (679)
T ss_dssp             HHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC
Confidence            44444444322 1 12355667777773333458888888888877644

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=95.27  E-value=0.26  Score=53.24  Aligned_cols=65  Identities=11%  Similarity=0.040  Sum_probs=44.5

Q ss_pred             CChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHH
Q psy14927         48 KDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHF  127 (1074)
Q Consensus        48 ~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~  127 (1074)
                      +++..+...|..+...|++++|+..|.++=.                     ..+++..+.+.+|+.+..+|++++|++.
T Consensus       115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~---------------------~~P~~~~a~~~la~~~~~~g~~~~A~~~  173 (287)
T 3qou_A          115 REEELXAQQAMQLMQESNYTDALPLLXDAWQ---------------------LSNQNGEIGLLLAETLIALNRSEDAEAV  173 (287)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------------HTTSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CchhhHHHHHHHHHhCCCHHHHHHHHHHHHH---------------------hCCcchhHHHHHHHHHHHCCCHHHHHHH
Confidence            4455666667777777777777766655421                     2456677777888888888888888888


Q ss_pred             HHHhCC
Q psy14927        128 YSVAGS  133 (1074)
Q Consensus       128 y~~a~~  133 (1074)
                      |.++-.
T Consensus       174 l~~~~~  179 (287)
T 3qou_A          174 LXTIPL  179 (287)
T ss_dssp             HTTSCG
T ss_pred             HHhCch
Confidence            777643

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=95.22  E-value=0.25  Score=60.77  Aligned_cols=70  Identities=19%  Similarity=0.118  Sum_probs=53.2

Q ss_pred             HhccCHHHHHHHHHHhh--------C--------hhhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhcC
Q psy14927         61 ESTEDMDLAMKYYEEAR--------D--------YLSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSG  119 (1074)
Q Consensus        61 e~~~~~~~A~~~y~~a~--------d--------~~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~g  119 (1074)
                      ...|++++|+++|.++-        .        +....++|..+|++++|.+..+     .+.+..+.+.+|..|...|
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  481 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG  481 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence            78999999999999875        1        2344556778888888877655     3567778888888888888


Q ss_pred             ChHHHHHHHHH
Q psy14927        120 QFDEAIHFYSV  130 (1074)
Q Consensus       120 ~~~~Ai~~y~~  130 (1074)
                      ++++|++.|.+
T Consensus       482 ~~~~A~~~~~~  492 (681)
T 2pzi_A          482 DYDSATKHFTE  492 (681)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            88888887654

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=95.20  E-value=0.087  Score=60.87  Aligned_cols=107  Identities=11%  Similarity=0.014  Sum_probs=70.9

Q ss_pred             HHhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhh
Q psy14927          4 EETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMV   83 (1074)
Q Consensus         4 ~~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~v   83 (1074)
                      +++.++|++++|..+|+++-....++.--  .++..          -.++..+|..+..+|+|++|+.+|.++=....  
T Consensus       295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~--~h~~~----------~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~--  360 (429)
T 3qwp_A          295 EELKAHWKWEQVLAMCQAIISSNSERLPD--INIYQ----------LKVLDCAMDACINLGLLEEALFYGTRTMEPYR--  360 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTCSSCCCCT--TSHHH----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--
T ss_pred             HHHHhhccHHHHHHHHHHHHHhccCcCCc--cchHH----------HHHHHHHHHHHHhhccHHHHHHHHHHHHHhHH--
Confidence            56778899999999999886443222000  01111          33566678888999999999999987643311  


Q ss_pred             hHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHhCChH
Q psy14927         84 RVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCG  135 (1074)
Q Consensus        84 r~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~  135 (1074)
                       -..--+.|+-|          ...+.||..|..+|++++|+.+|.+|-..-
T Consensus       361 -~~lg~~Hp~~a----------~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~  401 (429)
T 3qwp_A          361 -IFFPGSHPVRG----------VQVMKVGKLQLHQGMFPQAMKNLRLAFDIM  401 (429)
T ss_dssp             -HHSCSSCHHHH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             -HHcCCCChHHH----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence             11122233211          235689999999999999999988765433

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=95.18  E-value=0.019  Score=68.65  Aligned_cols=45  Identities=16%  Similarity=0.228  Sum_probs=34.6

Q ss_pred             HHHHhhhCCeEEE---eeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        848 IAHLFKSNKVTQL---NGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       848 ~~~~l~~~gV~~~---~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                      +.+.+.+.||+++   .+.+..+++..+  .+.+|   ++++|.||.|||..+
T Consensus       344 y~~al~~~nV~lv~~~~~~I~~it~~gv--~~~dG---~~~~D~IV~ATGf~~  391 (545)
T 3uox_A          344 YYETYNRDNVHLVDIREAPIQEVTPEGI--KTADA---AYDLDVIIYATGFDA  391 (545)
T ss_dssp             HHHHTTSTTEEEEETTTSCEEEEETTEE--EESSC---EEECSEEEECCCCBS
T ss_pred             HHHHhcCCCEEEEecCCCCceEEccCeE--EeCCC---eeecCEEEECCcccc
Confidence            3445556699999   467888887764  45777   689999999999985

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=95.14  E-value=0.031  Score=61.88  Aligned_cols=88  Identities=19%  Similarity=0.170  Sum_probs=65.5

Q ss_pred             hhHHhhcCCcEEEEecCC----ccC-----------CCCC-----CHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeE
Q psy14927        922 GSVWGRLGAEVTAIEFMN----AIG-----------GMGI-----DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNI  981 (1074)
Q Consensus       922 A~~l~~~G~~Vtlv~~~~----~~~-----------~~~~-----~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~  981 (1074)
                      |..|++.|.+|+|+++.+    .+.           .+.+     .+++...+.+.+++.||+++.++ +..+..+++.+
T Consensus        38 A~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~-v~~i~~~~~~~  116 (338)
T 3itj_A           38 AIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFGTEIITET-VSKVDLSSKPF  116 (338)
T ss_dssp             HHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEECSC-EEEEECSSSSE
T ss_pred             HHHHHHCCCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHcCCEEEEeE-EEEEEEcCCEE
Confidence            667788899999999843    111           0122     24777888888999999999998 99998876666


Q ss_pred             EEEEeeccCCCCceEEEcCEEEEccCCcccCC
Q psy14927        982 TVTIENVKDPTKKEELSCDALLVCVGRRPYTH 1013 (1074)
Q Consensus       982 ~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 1013 (1074)
                      .+.+..   ++.+.++.+|.||+|+|..|...
T Consensus       117 ~v~~~~---~~~~~~~~~d~vvlAtG~~~~~~  145 (338)
T 3itj_A          117 KLWTEF---NEDAEPVTTDAIILATGASAKRM  145 (338)
T ss_dssp             EEEETT---CSSSCCEEEEEEEECCCEEECCC
T ss_pred             EEEEEe---cCCCcEEEeCEEEECcCCCcCCC
Confidence            666542   23356799999999999988654

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=95.14  E-value=0.0023  Score=73.10  Aligned_cols=91  Identities=11%  Similarity=0.043  Sum_probs=55.9

Q ss_pred             hhhhhccccchHHHHHHHhh-------hhhhhcccc---ccccch---------------hh-hhh--------------
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-------KLFTQAGDK---GVKLNL---------------ET-MMG--------------  835 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-------~l~e~~~~~---g~~~~~---------------~~-~~~--------------  835 (1074)
                      +|+||||||+|+++|+.|++       +++|+.+..   |..+.+               .. +..              
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   81 (381)
T 3c4a_A            2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVHHN   81 (381)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEESS
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEeCC
Confidence            48999999999999999987       577776543   211100               00 000              


Q ss_pred             ----------hhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        836 ----------TKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       836 ----------~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                                +..-....+...+.+.+...||+++++ +|+.++..           .++.+|.||.|+|...
T Consensus        82 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~-----------~~~~ad~vV~AdG~~S  143 (381)
T 3c4a_A           82 EPSLMSTGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGEL-----------PLADYDLVVLANGVNH  143 (381)
T ss_dssp             SEEECCCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGGC-----------CGGGCSEEEECCGGGG
T ss_pred             eeEEecCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchhc-----------ccccCCEEEECCCCCc
Confidence                      000001233444566666779999988 45555431           1257999999999875

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=95.12  E-value=0.1  Score=47.10  Aligned_cols=94  Identities=21%  Similarity=0.286  Sum_probs=67.3

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhCh------
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDY------   79 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~------   79 (1074)
                      +...|++++|+.+|+++-..                    .+.++..+..+|..+...|++++|..+|.++-+.      
T Consensus        19 ~~~~~~~~~A~~~~~~~~~~--------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~   78 (125)
T 1na0_A           19 YYKQGDYDEAIEYYQKALEL--------------------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE   78 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHcCCHHHHHHHHHHHHHH--------------------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHH
Confidence            34567777777777766421                    1345778888899999999999999999886432      


Q ss_pred             --hhhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHHHHHhcC
Q psy14927         80 --LSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLARQYENSG  119 (1074)
Q Consensus        80 --~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~~~~~~g  119 (1074)
                        ..+..++...|++++|.+..+.     +.+..+...++..+..+|
T Consensus        79 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           79 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence              3456668889999999887653     456667777777766544

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=95.12  E-value=0.019  Score=69.60  Aligned_cols=50  Identities=20%  Similarity=0.150  Sum_probs=32.9

Q ss_pred             HHHHhhhCCeEEEee-eEEEe--cCCeE-EEEe---CCCCeeEEEcCeEEEccCCCC
Q psy14927        848 IAHLFKSNKVTQLNG-HGKIT--GPNTV-TVIK---SDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       848 ~~~~l~~~gV~~~~g-~v~~i--d~~~~-~v~~---~~G~~~~i~~d~lIIATG~~p  897 (1074)
                      +.+.+.+.||+++.+ .|+.+  +.+.+ .|..   .+|+...+.++.||+|||+..
T Consensus       161 L~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~  217 (621)
T 2h88_A          161 LYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIEDGTIHRFRAKNTVIATGGYG  217 (621)
T ss_dssp             HHHHHTTSCCEEEETEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred             HHHHHHhCCCEEEEceEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence            444455679999998 45554  33322 1222   466555799999999999864

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=95.10  E-value=0.015  Score=69.08  Aligned_cols=100  Identities=12%  Similarity=0.042  Sum_probs=0.0

Q ss_pred             hhhhhccccchHHHHHHHhh--------hhhhhcccccc-----------------ccchh-------------------
Q psy14927        796 VVLNTLGNCAAVQANYHLAT--------KLFTQAGDKGV-----------------KLNLE-------------------  831 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~--------~l~e~~~~~g~-----------------~~~~~-------------------  831 (1074)
                      +|||||||++|+++|+.|++        +|+|+.+....                 .+...                   
T Consensus         4 dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~~~~~~~g~~~~~~~~~~l~~lgi~~~~~~~~~~~~~~~~~~~~~w   83 (511)
T 2weu_A            4 SVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNVRRIGVGEATFSTVRHFFDYLGLDEREWLPRCAGGYKLGIRFENW   83 (511)
T ss_dssp             EEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC-------CCEECCTTHHHHHHHHTCCHHHHHHHTTCEEECEEEEESS
T ss_pred             eEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCCCCceeeccccCcchHHHHHHcCCCHHHHHHHcCCeEeccceecCC


Q ss_pred             -----------------------------------------------------------------h--------------
Q psy14927        832 -----------------------------------------------------------------T--------------  832 (1074)
Q Consensus       832 -----------------------------------------------------------------~--------------  832 (1074)
                                                                                       .              
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  163 (511)
T 2weu_A           84 SEPGEYFYHPFERLRVVDGFNMAEWWLAVGDRRTSFSEACYLTHRLCEAKRAPRMLDGSLFASQVDESLGRSTLAEQRAQ  163 (511)
T ss_dssp             SSTTCEEEEESCCCCEETTEEHHHHHHHHC----CHHHHHCHHHHHHHTTBCSBCTTSCBCC------CCSCCGGGCCSC
T ss_pred             CCCCCceEcCCCCCCCCCCCchHHHHHhccccccCcccccccccCHHHhhhhHHhHhcCCccccccccccccccccCcCC


Q ss_pred             hhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEec--CCe--EEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        833 MMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITG--PNT--VTVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       833 ~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id--~~~--~~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                      ......-....+...+.+.+...||+++.++|+.+.  .+.  ..|++.+|  .++.+|.||.|+|...
T Consensus       164 ~~~~~~~~~~~l~~~L~~~a~~~gv~~~~~~v~~i~~~~~~~~~~v~~~~g--~~~~ad~vV~A~G~~S  230 (511)
T 2weu_A          164 FPYAYHFDADEVARYLSEYAIARGVRHVVDDVQHVGQDERGWISGVHTKQH--GEISGDLFVDCTGFRG  230 (511)
T ss_dssp             CSCEEEECHHHHHHHHHHHHHHTTCEEEECCEEEEEECTTSCEEEEEESSS--CEEECSEEEECCGGGC
T ss_pred             CCeeEEEcHHHHHHHHHHHHHHCCCEEEECeEeEEEEcCCCCEEEEEECCC--CEEEcCEEEECCCcch

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=95.07  E-value=0.068  Score=57.68  Aligned_cols=123  Identities=14%  Similarity=0.061  Sum_probs=88.1

Q ss_pred             cCCHHHHHHHHHHcCcccchhhhHhhhc-------HHHHHHHhhc----------------------C------------
Q psy14927          9 NGDIDRAIRMFEKAETHQQHVPRMLLEN-------TDKLEKYIIQ----------------------S------------   47 (1074)
Q Consensus         9 ~g~~~eA~~~Ye~~~~~~~~~~~~~~~~-------~~~~~~~~~~----------------------~------------   47 (1074)
                      .++..+|.++|.++-..+...+...++.       -..|..+-..                      .            
T Consensus        19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v   98 (282)
T 4f3v_A           19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPV   98 (282)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEEC
T ss_pred             CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccccc
Confidence            5788889999988887776655444321       1122221111                      0            


Q ss_pred             -CChHHHHHHHHHHHhccCHHHHHHHHHHhhC-------hhhhhhHhhccCCHHHHHHHHHhcCC-------hHHHHHHH
Q psy14927         48 -KDPVLLKWWAQYIESTEDMDLAMKYYEEARD-------YLSMVRVLCFLQDFSRAAELANASGD-------TAAAYHLA  112 (1074)
Q Consensus        48 -~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d-------~~~~vr~l~~~~~~~~a~~i~~~~~~-------~~~~~~la  112 (1074)
                       +-..++..||..+...|+|++|.+.|...-.       ......++...++|++|....+....       .++.+.+|
T Consensus        99 ~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG  178 (282)
T 4f3v_A           99 TSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHG  178 (282)
T ss_dssp             SSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHH
T ss_pred             CCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHH
Confidence             1256888999999999999999999986521       12344458889999999998875432       34788999


Q ss_pred             HHHHhcCChHHHHHHHHHh
Q psy14927        113 RQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus       113 ~~~~~~g~~~~Ai~~y~~a  131 (1074)
                      ..++..|++++|+..|.++
T Consensus       179 ~al~~LG~~~eAl~~l~~a  197 (282)
T 4f3v_A          179 VAAANLALFTEAERRLTEA  197 (282)
T ss_dssp             HHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHH
Confidence            9999999999999998866

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=95.05  E-value=0.018  Score=67.30  Aligned_cols=49  Identities=12%  Similarity=0.064  Sum_probs=32.6

Q ss_pred             CCeEEEee-eEEEecC---C-eE-EEEeC---------------CCCeeEEEcCeEEEccCCCCCCCCCC
Q psy14927        855 NKVTQLNG-HGKITGP---N-TV-TVIKS---------------DGSTEEVKTKNILIATGSEVTPFPGI  903 (1074)
Q Consensus       855 ~gV~~~~g-~v~~id~---~-~~-~v~~~---------------~G~~~~i~~d~lIIATG~~p~~ipgi  903 (1074)
                      .||+|+++ .++.+..   . .+ .|.+.               +|+..++.+|.||+|+|.+|.+++|+
T Consensus       270 ~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~~l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p~~l~gl  339 (460)
T 1cjc_A          270 RAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGYKSRPIDPS  339 (460)
T ss_dssp             EEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCEECCCCCTT
T ss_pred             ceEEEECCCChheEEcCCCCceEEEEEEEEEEEccccCCCcccCCCceEEEEcCEEEECCCCCCCCCCCC
Confidence            78999998 3555532   2 22 12222               34346799999999999998666665

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=95.04  E-value=0.037  Score=66.86  Aligned_cols=100  Identities=14%  Similarity=0.058  Sum_probs=0.0

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhccccccccch--------------hhhhhhhhHHH---------------
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNL--------------ETMMGTKSAAV---------------  841 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~--------------~~~~~~~~~~~---------------  841 (1074)
                      +|||||||++|++||+.+++     +++|+.+..++...+              ...........               
T Consensus         9 DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~~~g~s~~a~GGi~~~~~~~~~ds~~~~~~d~~~~g~~~~d~~~v~~~   88 (588)
T 2wdq_A            9 DAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIEYM   88 (588)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGGGGCCSCEECCCCSSSCCCHHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcchhhCCccEEcCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHH


Q ss_pred             ------------------------------------------------------hhhhhhHHHHhhhCCeEEEee-eEEE
Q psy14927        842 ------------------------------------------------------KALTGGIAHLFKSNKVTQLNG-HGKI  866 (1074)
Q Consensus       842 ------------------------------------------------------~~l~~~~~~~l~~~gV~~~~g-~v~~  866 (1074)
                                                                            ..+...+.+.+.+.||+++.+ .|+.
T Consensus        89 ~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~~g~~~~~~~~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i~~~~~v~~  168 (588)
T 2wdq_A           89 CKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYALD  168 (588)
T ss_dssp             HHHHHHHHHHHHHTTCCCCBCTTSSBCEECCTTCBSTTTCSBCCCEECSTTCHHHHHHHHHHHHHHHTTCEEEETEEEEE
T ss_pred             HHhHHHHHHHHHHcCCCcccCCCCcEeeeecCCccccccccCcceEEEcCCCCHHHHHHHHHHHHHhCCCEEEeCcEEEE


Q ss_pred             e----cCCeEEEEe---CCCCeeEEEcCeEEEccCC
Q psy14927        867 T----GPNTVTVIK---SDGSTEEVKTKNILIATGS  895 (1074)
Q Consensus       867 i----d~~~~~v~~---~~G~~~~i~~d~lIIATG~  895 (1074)
                      +    +..-..|..   .+|+...+.++.||+|||.
T Consensus       169 L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg  204 (588)
T 2wdq_A          169 LVKNQDGAVVGCTALCIETGEVVYFKARATVLATGG  204 (588)
T ss_dssp             EEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCC
T ss_pred             EEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCC

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=95.03  E-value=0.093  Score=66.21  Aligned_cols=57  Identities=19%  Similarity=0.365  Sum_probs=44.2

Q ss_pred             CHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeE-EEEEeeccCCCCceEEEcCEEEEccCCcc
Q psy14927        947 DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNI-TVTIENVKDPTKKEELSCDALLVCVGRRP 1010 (1074)
Q Consensus       947 ~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~-~v~~~~~~~~g~~~~i~~D~vi~a~G~~p 1010 (1074)
                      +..+...+.+.+++.|++++.++.|+++..+++++ .|.+.+      + ++.+|.||+|+|...
T Consensus       150 p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~~------G-~i~Ad~VV~AaG~~s  207 (830)
T 1pj5_A          150 AARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTAD------G-VIPADIVVSCAGFWG  207 (830)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETT------E-EEECSEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHcCCEEECCceEEEEEEeCCEEEEEEECC------c-EEECCEEEECCccch
Confidence            34677778888899999999999999998766654 344322      2 799999999999753

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=95.02  E-value=0.055  Score=54.71  Aligned_cols=116  Identities=11%  Similarity=-0.015  Sum_probs=77.0

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHH-HHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhCh----
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTD-KLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDY----   79 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~----   79 (1074)
                      .+...|++++|+.+|+++-.....-+........ ....+     ...++..+|..+...|++++|.++|.++-..    
T Consensus        47 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  121 (198)
T 2fbn_A           47 EFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNI-----EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN  121 (198)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHH-----HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccc
Confidence            3456788888888888876433221110000000 00000     1368888899999999999999999986432    


Q ss_pred             ----hhhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHHHHHhcCChHHHH
Q psy14927         80 ----LSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLARQYENSGQFDEAI  125 (1074)
Q Consensus        80 ----~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~~~~~~g~~~~Ai  125 (1074)
                          ..+..+|..+|++++|.+..+.     +.+..+...++..+...|+..++.
T Consensus       122 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          122 VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence                3456668899999999887663     467778888888888888776665

>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A

Probab=94.95  E-value=0.55  Score=56.70  Aligned_cols=140  Identities=17%  Similarity=0.113  Sum_probs=78.7

Q ss_pred             HHHHHHhccCHHHHHHHHHHhhChhhhhhH---hhccCCHHHHHHHHH-hcCChH--HHHHHHHHHH--hcCChHHHHHH
Q psy14927         56 WAQYIESTEDMDLAMKYYEEARDYLSMVRV---LCFLQDFSRAAELAN-ASGDTA--AAYHLARQYE--NSGQFDEAIHF  127 (1074)
Q Consensus        56 ~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~---l~~~~~~~~a~~i~~-~~~~~~--~~~~la~~~~--~~g~~~~Ai~~  127 (1074)
                      |.+.+.=.|+|+.|.++-.+- ....+|.+   |...|-+..-..+.. +++++.  .+..+.+|-.  +..|..+|++|
T Consensus       300 Yf~vLlLtgqFE~AI~~L~~~-~~vdAVH~AIaL~~~gLL~~~~~lls~~~~~~~lN~arLI~~Yt~~F~~td~~~Al~Y  378 (661)
T 2qx5_A          300 YLQTLLLSGLYGLAIDYTYTF-SEMDAVHLAIGLASLKLFKIDSSTRLTKKPKRDIRFANILANYTKSFRYSDPRVAVEY  378 (661)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTT-CHHHHHHHHHHHHHTTC-----------------CHHHHHHHHHTTTTTTCHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHhc-CchhHHHHHHHHHHcCCccCCCcccccCCCcccccHHHHHHHHHHHhhcCCHHHHHHH
Confidence            455556678888887765555 55566666   555555542111111 112111  2333333322  67899999999


Q ss_pred             HHHhCCh--HHHHHHHHH--------hCchHHHHH-----------Hhhhc-------C-----chhHHHHHHHHcc-CC
Q psy14927        128 YSVAGSC--GNAVRLCKE--------QALDDQLWN-----------LALSA-------G-----PSEQIEAATYLET-IE  173 (1074)
Q Consensus       128 y~~a~~~--~~A~~la~~--------~~~~~~~~~-----------l~~~~-------~-----~~~~~~~A~~~e~-~~  173 (1074)
                      |......  .+...+|.+        -+.++.++.           +....       .     ......+|.-.+. |.
T Consensus       379 ~~li~l~~g~~~~~~~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~i~~~~~li~l~d~~~~~~~i~~~aA~~ae~~G~  458 (661)
T 2qx5_A          379 LVLITLNEGPTDVELCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQPLLHVRDEKEFLHTITEQAARRADEDGR  458 (661)
T ss_dssp             HHGGGGSCCHHHHHHHHHHHHHHHHHHCCHHHHHCEECTTSCEECCHHHHTCGGGTCSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHhccCCchHHHHHHHHHHHHHHhcccHHHHcCCcCCCCCcCcchHHHhhcccccccHHHHHHHHHHHHHHHHHHCCC
Confidence            9987443  334444443        233333321           11111       1     1223457888888 67


Q ss_pred             hhHHHHHHHHhCChHHHHHHHHh
Q psy14927        174 PDKAVLLYHKAGALHKALDLAFK  196 (1074)
Q Consensus       174 ~~~A~~ly~kaG~~~kAl~l~~~  196 (1074)
                      ++.|+.||+.||++.+|++++-+
T Consensus       459 ~~dAi~LY~La~~~d~vl~lln~  481 (661)
T 2qx5_A          459 IYDSILLYQLAEEYDIVITLVNS  481 (661)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHH
Confidence            99999999999999999999877

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=94.92  E-value=0.16  Score=48.96  Aligned_cols=82  Identities=15%  Similarity=0.064  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHh-----hC---HHHHHHHHHHcCCHHHHHHHHH-----hcCCcHHHHHHHHHHH
Q psy14927        624 RVLLKWWAQYIESTEDMDLAMKYYEEA-----RD---YLSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYE  690 (1074)
Q Consensus       624 ~~l~~~~a~~~e~~~~~~~A~~~y~~a-----g~---~~~ai~~~~~~~~~~~a~~v~~-----~~~~~~~~~~~A~~~~  690 (1074)
                      +..+...|...-..|+|++|+.+|.++     .+   |-..-.+|...++|++|+...+     ..+.......+|..+.
T Consensus        21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~  100 (148)
T 2vgx_A           21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL  100 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence            456777888999999999999999987     22   2334456889999999997774     2344555568999999


Q ss_pred             hcCCHHHHHHHHHHc
Q psy14927        691 NSGQFDEAIHFYSVA  705 (1074)
Q Consensus       691 ~~g~~~~A~~~~~ka  705 (1074)
                      ..|++++|+.+|-++
T Consensus       101 ~~g~~~~A~~~~~~a  115 (148)
T 2vgx_A          101 QXGELAEAESGLFLA  115 (148)
T ss_dssp             HTTCHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHH
Confidence            999999999988665

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=94.85  E-value=0.093  Score=57.80  Aligned_cols=85  Identities=18%  Similarity=0.252  Sum_probs=63.8

Q ss_pred             hhHHhhcCCcEEEEecCCccC--------------CCCC----CHHHHHHHHHHHHhCCCEEEeCceEEEEEecCC-eEE
Q psy14927        922 GSVWGRLGAEVTAIEFMNAIG--------------GMGI----DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGD-NIT  982 (1074)
Q Consensus       922 A~~l~~~G~~Vtlv~~~~~~~--------------~~~~----~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~-~~~  982 (1074)
                      |..|++.|.+|+|+++.+.+.              .+.+    ..++...+.+.+++.|+++++++.|..+...++ ...
T Consensus        23 A~~l~~~g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~  102 (332)
T 3lzw_A           23 AFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTICLEQAVESVEKQADGVFK  102 (332)
T ss_dssp             HHHHHHTTCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEEECSCCEEEEEECTTSCEE
T ss_pred             HHHHHHCCCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcEEccCEEEEEEECCCCcEE
Confidence            556778899999999876432              0111    256777788888889999999999999988765 455


Q ss_pred             EEEeeccCCCCceEEEcCEEEEccCC---cccCC
Q psy14927        983 VTIENVKDPTKKEELSCDALLVCVGR---RPYTH 1013 (1074)
Q Consensus       983 v~~~~~~~~g~~~~i~~D~vi~a~G~---~p~~~ 1013 (1074)
                      |.+.+      + ++.+|.||+|+|.   .|...
T Consensus       103 v~~~~------g-~~~~d~vVlAtG~~~~~p~~~  129 (332)
T 3lzw_A          103 LVTNE------E-THYSKTVIITAGNGAFKPRKL  129 (332)
T ss_dssp             EEESS------E-EEEEEEEEECCTTSCCEECCC
T ss_pred             EEECC------C-EEEeCEEEECCCCCcCCCCCC
Confidence            65543      2 3999999999999   77654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=94.81  E-value=0.08  Score=48.09  Aligned_cols=71  Identities=14%  Similarity=0.163  Sum_probs=56.3

Q ss_pred             CCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHH
Q psy14927         47 SKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIH  126 (1074)
Q Consensus        47 ~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~  126 (1074)
                      ++++..+..+|..+...|++++|.++|.++-..                     .+.+..+.+.+|..|...|++++|++
T Consensus        16 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------------------~p~~~~~~~~la~~~~~~g~~~~A~~   74 (115)
T 2kat_A           16 TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF---------------------DPTYSVAWKWLGKTLQGQGDRAGARQ   74 (115)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------CTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH---------------------CCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence            467889999999999999999999999776432                     23456678899999999999999999


Q ss_pred             HHHHhCChHHHHHHHHHh
Q psy14927        127 FYSVAGSCGNAVRLCKEQ  144 (1074)
Q Consensus       127 ~y~~a~~~~~A~~la~~~  144 (1074)
                      +|.      .|+++....
T Consensus        75 ~~~------~al~~~~~~   86 (115)
T 2kat_A           75 AWE------SGLAAAQSR   86 (115)
T ss_dssp             HHH------HHHHHHHHH
T ss_pred             HHH------HHHHhcccc
Confidence            875      445555444

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=94.80  E-value=0.18  Score=46.33  Aligned_cols=81  Identities=20%  Similarity=0.124  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHh-----hC---HHHHHHHHHHcCCHHHHHHHHH----hc-CCcHHHHHHHHHHHh
Q psy14927        625 VLLKWWAQYIESTEDMDLAMKYYEEA-----RD---YLSMVRVLCFLQDFSRAAELAN----AS-GDTAAAYHLARQYEN  691 (1074)
Q Consensus       625 ~l~~~~a~~~e~~~~~~~A~~~y~~a-----g~---~~~ai~~~~~~~~~~~a~~v~~----~~-~~~~~~~~~A~~~~~  691 (1074)
                      +.+...|...-..|+|++|+.+|.++     ++   +-....+|...++|++|++.++    .. +.......+|..+..
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   84 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA   84 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            45666777888889999999999887     22   3445566888999999987763    22 333444488999999


Q ss_pred             cCCHHHHHHHHHHc
Q psy14927        692 SGQFDEAIHFYSVA  705 (1074)
Q Consensus       692 ~g~~~~A~~~~~ka  705 (1074)
                      .|++++|+++|.++
T Consensus        85 ~~~~~~A~~~~~~a   98 (126)
T 3upv_A           85 VKEYASALETLDAA   98 (126)
T ss_dssp             TTCHHHHHHHHHHH
T ss_pred             HhCHHHHHHHHHHH
Confidence            99999998888765

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=94.80  E-value=0.088  Score=59.55  Aligned_cols=82  Identities=18%  Similarity=0.222  Sum_probs=67.7

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHhhC------------------------hhhhhhHhhccCCHHHHHHHHHh----
Q psy14927         50 PVLLKWWAQYIESTEDMDLAMKYYEEARD------------------------YLSMVRVLCFLQDFSRAAELANA----  101 (1074)
Q Consensus        50 ~~l~~~~a~~~e~~~~~~~A~~~y~~a~d------------------------~~~~vr~l~~~~~~~~a~~i~~~----  101 (1074)
                      ...+...|..+...|+|++|+++|.++=.                        +.++..+|..+|++++|.+..+.    
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            34577889999999999999999998765                        23566668889999999888763    


Q ss_pred             -cCChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927        102 -SGDTAAAYHLARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus       102 -~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                       +.+..+.+.+|..|...|++++|++.|.++
T Consensus       303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~A  333 (370)
T 1ihg_A          303 DPSNTKALYRRAQGWQGLKEYDQALADLKKA  333 (370)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence             456778899999999999999999887754

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=94.77  E-value=0.057  Score=59.21  Aligned_cols=85  Identities=18%  Similarity=0.258  Sum_probs=61.5

Q ss_pred             hhHHhhcCCcEEEEecC--CccC-------CCCC----CHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeec
Q psy14927        922 GSVWGRLGAEVTAIEFM--NAIG-------GMGI----DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENV  988 (1074)
Q Consensus       922 A~~l~~~G~~Vtlv~~~--~~~~-------~~~~----~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~  988 (1074)
                      |..|.+.|.+|+|+++.  ....       .+.+    ..++...+.+.+++.||+++. ..+..+..+++...+.+.+ 
T Consensus        31 A~~l~~~g~~v~lie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~-  108 (323)
T 3f8d_A           31 ALYSARYMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLL-DIVEKIENRGDEFVVKTKR-  108 (323)
T ss_dssp             HHHHHHTTCCEEEEESSTTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEE-SCEEEEEEC--CEEEEESS-
T ss_pred             HHHHHHCCCcEEEEeccCCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEE-EEEEEEEecCCEEEEEECC-
Confidence            66777889999999985  1110       0122    256777778888899999999 8899998866555665443 


Q ss_pred             cCCCCceEEEcCEEEEccCCcccCC
Q psy14927        989 KDPTKKEELSCDALLVCVGRRPYTH 1013 (1074)
Q Consensus       989 ~~~g~~~~i~~D~vi~a~G~~p~~~ 1013 (1074)
                           +.++.+|.||+|+|..|...
T Consensus       109 -----g~~~~~d~lvlAtG~~~~~~  128 (323)
T 3f8d_A          109 -----KGEFKADSVILGIGVKRRKL  128 (323)
T ss_dssp             -----SCEEEEEEEEECCCCEECCC
T ss_pred             -----CCEEEcCEEEECcCCCCccC
Confidence                 45899999999999987654

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=94.76  E-value=0.1  Score=63.96  Aligned_cols=60  Identities=10%  Similarity=0.238  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHhCC---CEEEeCceEEEEEecC--------CeEEEEEeecc-----------------------------
Q psy14927        950 VAKQFQRILGKQG---MQFKLGTKVTGASKSG--------DNITVTIENVK-----------------------------  989 (1074)
Q Consensus       950 ~~~~~~~~l~~~g---V~i~~~~~v~~i~~~~--------~~~~v~~~~~~-----------------------------  989 (1074)
                      +.+.+.+.+.+.|   |++.+++.++.++.++        +++.+++.+..                             
T Consensus       121 le~~L~~~~~~~g~~~v~v~~g~~v~~~~~d~~~~~~~~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d  200 (665)
T 1pn0_A          121 IERRILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAYPVTMTLRYMSEDESTPLQFGHKTENGLFRSNLQTQEEED  200 (665)
T ss_dssp             HHHHHHHHHHHHHTTSSCEECSEEEEEEEECGGGTTCTTCCCEEEEEEECCGGGSCCCTTCCCCCSSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCceEEEeCCEEEEEEecCcccccCCCCCEEEEEEeccccccccccccccccccccccccccccccc
Confidence            4455666677666   8999999999987653        35777766410                             


Q ss_pred             ---------CCCCceEEEcCEEEEccCCc
Q psy14927        990 ---------DPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus       990 ---------~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
                               .+|..+++.+|.||-|-|..
T Consensus       201 ~~~~~~~~~~~G~~~~i~A~~VVGADG~~  229 (665)
T 1pn0_A          201 ANYRLPEGKEAGEIETVHCKYVIGCDGGH  229 (665)
T ss_dssp             TSCCCSTTCCTTCEEEEEEEEEEECCCTT
T ss_pred             ccccccccCCCCceEEEEeCEEEeccCCC
Confidence                     02444789999999998864

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=94.72  E-value=0.095  Score=58.32  Aligned_cols=83  Identities=17%  Similarity=0.107  Sum_probs=67.5

Q ss_pred             ChHHHHHHHHHHHhccCHHHHHHHHHHhhC-----------------------hhhhhhHhhccCCHHHHHHHHH-----
Q psy14927         49 DPVLLKWWAQYIESTEDMDLAMKYYEEARD-----------------------YLSMVRVLCFLQDFSRAAELAN-----  100 (1074)
Q Consensus        49 ~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d-----------------------~~~~vr~l~~~~~~~~a~~i~~-----  100 (1074)
                      ....+..+|..+...|+|++|.++|.++=.                       +.++..+|..+|++++|.+..+     
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  225 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL  225 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            356788889999999999999999998633                       2345566888999999988776     


Q ss_pred             hcCChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927        101 ASGDTAAAYHLARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus       101 ~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                      .+.+..+.+.+|..|...|++++|++.|.++
T Consensus       226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  256 (336)
T 1p5q_A          226 DSNNEKGLSRRGEAHLAVNDFELARADFQKV  256 (336)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3567788889999999999999999887653

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=94.70  E-value=0.049  Score=66.53  Aligned_cols=100  Identities=18%  Similarity=0.106  Sum_probs=0.0

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhccccccccchh---------------------------------------
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLE---------------------------------------  831 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~---------------------------------------  831 (1074)
                      +|||||||++|++||+.+++     +++++....++...+.                                       
T Consensus         7 DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~~~~g~s~~a~GGi~a~~~~~~~g~~ds~~~~~~dt~~~g~~~~d~~~v   86 (660)
T 2bs2_A            7 DSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKMSDGDNEDLHFMDTVKGSDWGCDQKVA   86 (660)
T ss_dssp             SEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGGGSGGGGCCSCEECCCCCSGGGTTCCHHHHHHHHHHHTTTCSCHHHH
T ss_pred             cEEEECchHHHHHHHHHHHHCCCcEEEEeccCCCCCcccccCCCeEeccCCcccCCCCCHHHHHHHHHHhcCCCCCHHHH


Q ss_pred             -hhhhhhhHHHhhhhhh------------------------------------------------------------HHH
Q psy14927        832 -TMMGTKSAAVKALTGG------------------------------------------------------------IAH  850 (1074)
Q Consensus       832 -~~~~~~~~~~~~l~~~------------------------------------------------------------~~~  850 (1074)
                       .+.......++.+...                                                            +.+
T Consensus        87 ~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~g~~~~~l~~~e~~~~~~~~~~gg~~~~R~~~~~d~tG~~l~~~L~~  166 (660)
T 2bs2_A           87 RMFVNTAPKAIRELAAWGVPWTRIHKGDRMAIINAQKTTITEEDFRHGLIHSRDFGGTKKWRTCYTADATGHTMLFAVAN  166 (660)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCBCCSEEEECCCSSCCCEEEECGGGTTSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCceecCCCcccccccccccccccchhhhhhhccccccccccceeEeeCCCCHHHHHHHHHH


Q ss_pred             HhhhCCeEEEee-eEEEe--cCC---eEEEEe-CCCCeeEEEcCeEEEccCC
Q psy14927        851 LFKSNKVTQLNG-HGKIT--GPN---TVTVIK-SDGSTEEVKTKNILIATGS  895 (1074)
Q Consensus       851 ~l~~~gV~~~~g-~v~~i--d~~---~~~v~~-~~G~~~~i~~d~lIIATG~  895 (1074)
                      .+.+.||+++.+ .|+.+  +.+   .+.+.. .+|....+.++.||+|||.
T Consensus       167 ~a~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG  218 (660)
T 2bs2_A          167 ECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGG  218 (660)
T ss_dssp             HHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCC
T ss_pred             HHHhCCCEEEECcEEEEEEecCCEEEEEEEEECCCCcEEEEEcCEEEEccCc

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=94.61  E-value=0.023  Score=65.29  Aligned_cols=52  Identities=6%  Similarity=0.134  Sum_probs=41.7

Q ss_pred             hhhhhHHHHhhhCCeEEEee-eEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCC
Q psy14927        843 ALTGGIAHLFKSNKVTQLNG-HGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       843 ~l~~~~~~~l~~~gV~~~~g-~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      .+...+.+.+++.||+++.+ .++.++.+.  |++++|  .++.+|.||+|||..|.
T Consensus       219 ~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~--v~~~~g--~~~~~D~vi~a~G~~~~  271 (409)
T 3h8l_A          219 NSRKAVASIYNQLGIKLVHNFKIKEIREHE--IVDEKG--NTIPADITILLPPYTGN  271 (409)
T ss_dssp             HHHHHHHHHHHHHTCEEECSCCEEEECSSE--EEETTS--CEEECSEEEEECCEECC
T ss_pred             HHHHHHHHHHHHCCCEEEcCCceEEECCCe--EEECCC--CEEeeeEEEECCCCCcc
Confidence            34445677778889999998 588888775  566788  68999999999999874

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=94.52  E-value=0.23  Score=47.04  Aligned_cols=81  Identities=17%  Similarity=0.083  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHh-----hC---HHHHHHHHHHcCCHHHHHHHHH-----hcCCcHHHHHHHHHHHh
Q psy14927        625 VLLKWWAQYIESTEDMDLAMKYYEEA-----RD---YLSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYEN  691 (1074)
Q Consensus       625 ~l~~~~a~~~e~~~~~~~A~~~y~~a-----g~---~~~ai~~~~~~~~~~~a~~v~~-----~~~~~~~~~~~A~~~~~  691 (1074)
                      ..+...|...-..|+|++|+.+|.++     .+   |-..-.+|...+++++|+...+     ..+.......+|..+..
T Consensus        19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   98 (142)
T 2xcb_A           19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ   98 (142)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence            56677888888899999999999887     22   2334456888999999987663     24445555588999999


Q ss_pred             cCCHHHHHHHHHHc
Q psy14927        692 SGQFDEAIHFYSVA  705 (1074)
Q Consensus       692 ~g~~~~A~~~~~ka  705 (1074)
                      .|++++|+.+|-++
T Consensus        99 ~g~~~~A~~~~~~a  112 (142)
T 2xcb_A           99 LGDLDGAESGFYSA  112 (142)
T ss_dssp             TTCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHH
Confidence            99999999988665

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=94.52  E-value=0.012  Score=68.64  Aligned_cols=89  Identities=19%  Similarity=0.135  Sum_probs=51.8

Q ss_pred             chhhhhhccccchHHHHHHHhh------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeee-EEE
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGH-GKI  866 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~-v~~  866 (1074)
                      .++|+|||||..|+.+|..+.+      +++...+..    .   ++....    +     ...+...||+|+++. ++.
T Consensus       264 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~----~---~p~~~~----e-----~~~~~~~Gv~~~~~~~~~~  327 (456)
T 2vdc_G          264 GKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRK----N---MPGSQR----E-----VAHAEEEGVEFIWQAAPEG  327 (456)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCST----T---CSSCHH----H-----HHHHHHTTCEEECCSSSCC
T ss_pred             CCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCcc----C---CCCCHH----H-----HHHHHHCCCEEEeCCCceE
Confidence            3459999999999999998877      233222211    0   111111    1     234566799998872 333


Q ss_pred             ecCCe----EEEE---e----C---------CCCeeEEEcCeEEEccCCCCC
Q psy14927        867 TGPNT----VTVI---K----S---------DGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       867 id~~~----~~v~---~----~---------~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      +..+.    +++.   +    .         +|+..++.+|.||+|+|..|.
T Consensus       328 i~~~g~v~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p~  379 (456)
T 2vdc_G          328 FTGDTVVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEPE  379 (456)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEECTTCCEEEEEEEEEEEECSEEEECSCEECC
T ss_pred             EeCCCcEEEEEEEEEEecccCCcCCccccccCCcEEEEECCEEEECCCCCCC
Confidence            32211    1111   0    1         233357999999999999874

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=94.49  E-value=0.21  Score=49.27  Aligned_cols=106  Identities=11%  Similarity=0.055  Sum_probs=67.9

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchhhhHh-------h-h---c---HHHHHHHhh-cCCChHHHHHHHHHHHhccCHHHHH
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHVPRML-------L-E---N---TDKLEKYII-QSKDPVLLKWWAQYIESTEDMDLAM   70 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~-------~-~---~---~~~~~~~~~-~~~~~~l~~~~a~~~e~~~~~~~A~   70 (1074)
                      +...|++++|+..|+++-..+. -+...       + .   .   -..++..+. .++++..+..+|..+...|++++|.
T Consensus        50 ~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~  128 (176)
T 2r5s_A           50 LLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEAL  128 (176)
T ss_dssp             HHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHH
Confidence            4678999999999999875542 11111       0 1   0   112222222 2456777777777777777777777


Q ss_pred             HHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927         71 KYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus        71 ~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                      .+|.++=..           +|        ...+..+...++..|...|+.++|+..|.++
T Consensus       129 ~~~~~~l~~-----------~p--------~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a  170 (176)
T 2r5s_A          129 ELLWNILKV-----------NL--------GAQDGEVKKTFMDILSALGQGNAIASKYRRQ  170 (176)
T ss_dssp             HHHHHHHTT-----------CT--------TTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             HHHHHHHHh-----------Cc--------ccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence            777654322           11        1123557789999999999999999998753

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=94.37  E-value=0.039  Score=64.44  Aligned_cols=50  Identities=14%  Similarity=0.191  Sum_probs=33.4

Q ss_pred             CCeEEEee-eEEEecCC-e---EEEEe--------------CCCCeeEEEcCeEEEccCCCCCCCCCCC
Q psy14927        855 NKVTQLNG-HGKITGPN-T---VTVIK--------------SDGSTEEVKTKNILIATGSEVTPFPGIE  904 (1074)
Q Consensus       855 ~gV~~~~g-~v~~id~~-~---~~v~~--------------~~G~~~~i~~d~lIIATG~~p~~ipgi~  904 (1074)
                      .||+|+++ .++.+..+ .   +++..              .+|+..++.+|.||+|+|.+|.++++++
T Consensus       265 ~gv~i~~~~~~~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~p~~l~gl~  333 (456)
T 1lqt_A          265 RRMVFRFLTSPIEIKGKRKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVPTPGLP  333 (456)
T ss_dssp             EEEEEECSEEEEEEECSSSCCEEEEEEEEEEECSSSSEEEEEEEEEEEEECSEEEECSCEECCCCTTSC
T ss_pred             ceEEEEeCCCCeEEecCCcEeEEEEEEEEecCCCcccccccCCCceEEEEcCEEEEccccccCCCCCCc
Confidence            68999998 46666543 1   33321              1343357999999999999986555554

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=94.30  E-value=0.03  Score=69.46  Aligned_cols=92  Identities=14%  Similarity=0.125  Sum_probs=60.3

Q ss_pred             hhhhhhc--cccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEE
Q psy14927        795 QVVLNTL--GNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKI  866 (1074)
Q Consensus       795 ~~VviiG--gG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~  866 (1074)
                      ++|+|||  ||+.|+.+|..|++     ++++..+ ....   ...        ......+.+.+++.||+++.+ .++.
T Consensus       529 k~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~~---~~~--------~~~~~~~~~~l~~~GV~i~~~~~v~~  596 (729)
T 1o94_A          529 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LANY---MHF--------TLEYPNMMRRLHELHVEELGDHFCSR  596 (729)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTHH---HHH--------TTCHHHHHHHHHHTTCEEECSEEEEE
T ss_pred             CeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-cccc---ccc--------cccHHHHHHHHHhCCCEEEcCcEEEE
Confidence            3499999  99999999999988     3343322 1100   000        001223556677889999999 5888


Q ss_pred             ecCCeEEEEe--CCCC-----------------eeEEEcCeEEEccCCCCC
Q psy14927        867 TGPNTVTVIK--SDGS-----------------TEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       867 id~~~~~v~~--~~G~-----------------~~~i~~d~lIIATG~~p~  898 (1074)
                      ++.+.+.+..  .++.                 ..++.+|.||+|+|..|.
T Consensus       597 i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~  647 (729)
T 1o94_A          597 IEPGRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSE  647 (729)
T ss_dssp             EETTEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEEC
T ss_pred             EECCeEEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCC
Confidence            8877665543  2221                 123999999999999874

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=94.18  E-value=0.26  Score=47.82  Aligned_cols=82  Identities=16%  Similarity=0.073  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHhh-----C---HHHHHHHHHHcCCHHHHHHHHH----h-cCCcHHHHHHHHHHH
Q psy14927        624 RVLLKWWAQYIESTEDMDLAMKYYEEAR-----D---YLSMVRVLCFLQDFSRAAELAN----A-SGDTAAAYHLARQYE  690 (1074)
Q Consensus       624 ~~l~~~~a~~~e~~~~~~~A~~~y~~ag-----~---~~~ai~~~~~~~~~~~a~~v~~----~-~~~~~~~~~~A~~~~  690 (1074)
                      +..+...|......|+|++|+.+|.++=     +   +-....+|...++|++|++.++    . .........+|..+.
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   90 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF   90 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            3567778888888889999999998872     2   2344555788888888886663    2 223333447788888


Q ss_pred             hcCCHHHHHHHHHHc
Q psy14927        691 NSGQFDEAIHFYSVA  705 (1074)
Q Consensus       691 ~~g~~~~A~~~~~ka  705 (1074)
                      ..|++++|+++|.++
T Consensus        91 ~~g~~~~A~~~~~~a  105 (164)
T 3sz7_A           91 DMADYKGAKEAYEKG  105 (164)
T ss_dssp             HTTCHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHH
Confidence            888888888877654

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=94.04  E-value=0.067  Score=63.66  Aligned_cols=58  Identities=19%  Similarity=0.324  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeE-EEEEeeccCCCCceEEEcCEEEEccCCccc
Q psy14927        948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNI-TVTIENVKDPTKKEELSCDALLVCVGRRPY 1011 (1074)
Q Consensus       948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~-~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~ 1011 (1074)
                      +.+...+.+.+++.||+++++++|+++..+++.+ .|++.+      +.++.+|.||+|+|..+.
T Consensus       220 ~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~------G~~i~Ad~VVlA~G~~s~  278 (549)
T 3nlc_A          220 VTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSN------GEEIKSRHVVLAVGHSAR  278 (549)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETT------SCEEECSCEEECCCTTCH
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECC------CCEEECCEEEECCCCChh
Confidence            4556667778888999999999999998766553 355543      457999999999999885

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=94.00  E-value=0.54  Score=57.47  Aligned_cols=54  Identities=11%  Similarity=0.086  Sum_probs=40.7

Q ss_pred             CCChHHHHHHHHHHHhccCHHHHH-HHHHHhhCh--------hhhhhHhhccCCHHHHHHHHH
Q psy14927         47 SKDPVLLKWWAQYIESTEDMDLAM-KYYEEARDY--------LSMVRVLCFLQDFSRAAELAN  100 (1074)
Q Consensus        47 ~~~~~l~~~~a~~~e~~~~~~~A~-~~y~~a~d~--------~~~vr~l~~~~~~~~a~~i~~  100 (1074)
                      +..+.+|..||++.+..|+.++|. +.|.+|=..        ...+.+....|++++|.++..
T Consensus       340 p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iye  402 (679)
T 4e6h_A          340 CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTIL  402 (679)
T ss_dssp             TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            678999999999999999998886 888886432        234444556777777777655

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=93.96  E-value=0.32  Score=45.06  Aligned_cols=82  Identities=20%  Similarity=0.095  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHh--------hCHHHHHHHHHHcCCHHHHHHHHH----hcC-CcHHHHHHHHHHH
Q psy14927        624 RVLLKWWAQYIESTEDMDLAMKYYEEA--------RDYLSMVRVLCFLQDFSRAAELAN----ASG-DTAAAYHLARQYE  690 (1074)
Q Consensus       624 ~~l~~~~a~~~e~~~~~~~A~~~y~~a--------g~~~~ai~~~~~~~~~~~a~~v~~----~~~-~~~~~~~~A~~~~  690 (1074)
                      +..+...|...-..|+|++|+.+|.++        .-+-....+|...++|++|...++    ..+ .......+|..+.
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   88 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   88 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence            457778888888999999999999887        223445566888999999987763    223 3344448899999


Q ss_pred             hcCCHHHHHHHHHHc
Q psy14927        691 NSGQFDEAIHFYSVA  705 (1074)
Q Consensus       691 ~~g~~~~A~~~~~ka  705 (1074)
                      ..|+++.|+.+|.++
T Consensus        89 ~~~~~~~A~~~~~~a  103 (137)
T 3q49_B           89 EMESYDEAIANLQRA  103 (137)
T ss_dssp             HTTCHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHH
Confidence            999999999888766

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=93.92  E-value=0.024  Score=72.55  Aligned_cols=83  Identities=17%  Similarity=0.175  Sum_probs=56.7

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEec
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITG  868 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id  868 (1074)
                      ++|+|||||+.|+.+|..+++     ++++..+...         .       .     .+.+++.||+|+.+ .++.+.
T Consensus       285 k~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~---------~-------~-----~~~l~~~GV~v~~~~~v~~i~  343 (965)
T 2gag_A          285 ARIAVATTNDSAYELVRELAATGGVVAVIDARSSIS---------A-------A-----AAQAVADGVQVISGSVVVDTE  343 (965)
T ss_dssp             SSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCC---------H-------H-----HHHHHHTTCCEEETEEEEEEE
T ss_pred             CeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccc---------h-------h-----HHHHHhCCeEEEeCCEeEEEe
Confidence            349999999999999999987     3444433221         0       0     34467789999999 466665


Q ss_pred             C--C-eE-EEEeCC-------CCeeEEEcCeEEEccCCCCC
Q psy14927        869 P--N-TV-TVIKSD-------GSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       869 ~--~-~~-~v~~~~-------G~~~~i~~d~lIIATG~~p~  898 (1074)
                      .  + .+ .|++.+       |+..++.+|.||+|+|.+|.
T Consensus       344 ~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~  384 (965)
T 2gag_A          344 ADENGELSAIVVAELDEARELGGTQRFEADVLAVAGGFNPV  384 (965)
T ss_dssp             ECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCEEEC
T ss_pred             ccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCcCcC
Confidence            3  2 11 344332       43468999999999999874

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=93.87  E-value=0.17  Score=58.90  Aligned_cols=85  Identities=13%  Similarity=0.130  Sum_probs=70.3

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHhhCh-----------------------hhhhhHhhccCCHHHHHHHHHh-----
Q psy14927         50 PVLLKWWAQYIESTEDMDLAMKYYEEARDY-----------------------LSMVRVLCFLQDFSRAAELANA-----  101 (1074)
Q Consensus        50 ~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~-----------------------~~~vr~l~~~~~~~~a~~i~~~-----  101 (1074)
                      ...+...|..+...|+|++|+.+|.+|=.+                       .++..+|..+|++++|.+..+.     
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  347 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD  347 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            457778899999999999999999986432                       2556678889999999888763     


Q ss_pred             cCChHHHHHHHHHHHhcCChHHHHHHHHHhCCh
Q psy14927        102 SGDTAAAYHLARQYENSGQFDEAIHFYSVAGSC  134 (1074)
Q Consensus       102 ~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~  134 (1074)
                      +.+..+.+.+|..|...|++++|++.|.++-..
T Consensus       348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l  380 (457)
T 1kt0_A          348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  380 (457)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            677888999999999999999999988775443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.86  E-value=0.25  Score=46.33  Aligned_cols=95  Identities=19%  Similarity=0.075  Sum_probs=62.2

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhCh-----
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDY-----   79 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~-----   79 (1074)
                      .+...|++++|+.+|+++-.....-+.                 .+.++..+|..+...|++++|.++|.++-..     
T Consensus        37 ~~~~~~~~~~A~~~~~~a~~~~~~~~~-----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~   99 (148)
T 2dba_A           37 ELFKCGDYGGALAAYTQALGLDATPQD-----------------QAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDV   99 (148)
T ss_dssp             HHHTTTCHHHHHHHHHHHHTSCCCHHH-----------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCH
T ss_pred             HHHHhCCHHHHHHHHHHHHHHcccchH-----------------HHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCH
Confidence            456778888888888887654411000                 1567777888888888888888888775322     


Q ss_pred             ---hhhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHHHHH
Q psy14927         80 ---LSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLARQYE  116 (1074)
Q Consensus        80 ---~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~~~~  116 (1074)
                         ..+..++..+|++++|.+..++     +.+......+++...
T Consensus       100 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  144 (148)
T 2dba_A          100 KALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG  144 (148)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence               2345557778888888776652     344555555555544

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=93.85  E-value=0.1  Score=60.06  Aligned_cols=57  Identities=16%  Similarity=0.352  Sum_probs=47.1

Q ss_pred             CHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcc
Q psy14927        947 DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRP 1010 (1074)
Q Consensus       947 ~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p 1010 (1074)
                      ...+.+.+.+.+++.||+++++++|+++..+++++.|.+.+      + ++.+|.||+|+|..+
T Consensus       131 ~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~------g-~i~ad~VIlAtG~~S  187 (417)
T 3v76_A          131 AKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSA------G-TVDAASLVVASGGKS  187 (417)
T ss_dssp             HHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETT------E-EEEESEEEECCCCSS
T ss_pred             HHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECC------c-EEEeeEEEECCCCcc
Confidence            35777888888999999999999999998877776665433      3 799999999999875

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=93.84  E-value=0.32  Score=47.11  Aligned_cols=83  Identities=17%  Similarity=0.128  Sum_probs=59.4

Q ss_pred             hHHHHHHHHHHHHhhhcHHHHHHHHHHhhCH--------------------------HHHHHHHHHcCCHHHHHHHHH--
Q psy14927        623 YRVLLKWWAQYIESTEDMDLAMKYYEEARDY--------------------------LSMVRVLCFLQDFSRAAELAN--  674 (1074)
Q Consensus       623 ~~~l~~~~a~~~e~~~~~~~A~~~y~~ag~~--------------------------~~ai~~~~~~~~~~~a~~v~~--  674 (1074)
                      ....+...|...-..|+|++|+.+|.+|=+.                          -+...+|...++|++|+..++  
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            3346667777788888999999988877433                          234456788888888887763  


Q ss_pred             --h-cCCcHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy14927        675 --A-SGDTAAAYHLARQYENSGQFDEAIHFYSVA  705 (1074)
Q Consensus       675 --~-~~~~~~~~~~A~~~~~~g~~~~A~~~~~ka  705 (1074)
                        . .........+|..+...|++++|+..|.++
T Consensus        90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a  123 (162)
T 3rkv_A           90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLL  123 (162)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence              2 233344448888888899988888888665

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=93.70  E-value=0.18  Score=55.06  Aligned_cols=85  Identities=18%  Similarity=0.252  Sum_probs=60.9

Q ss_pred             hhHHhhcCC-cEEEEecCCc---c-------CCCCC-----CHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEE
Q psy14927        922 GSVWGRLGA-EVTAIEFMNA---I-------GGMGI-----DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTI  985 (1074)
Q Consensus       922 A~~l~~~G~-~Vtlv~~~~~---~-------~~~~~-----~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~  985 (1074)
                      |..+++.|. +|+++++...   .       ..+.+     .+.+...+.+.+.+.|++++. ..+..+..+++...+.+
T Consensus        17 A~~l~~~g~~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~   95 (311)
T 2q0l_A           17 GLYATRGGVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEM-TAVQRVSKKDSHFVILA   95 (311)
T ss_dssp             HHHHHHTTCSSEEEECSSSTTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEEC-SCEEEEEEETTEEEEEE
T ss_pred             HHHHHHCCCCcEEEEcCCCCCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEE-EEEEEEEEcCCEEEEEE
Confidence            556777899 9999987521   0       00122     246677777888889999998 68999987666555554


Q ss_pred             eeccCCCCceEEEcCEEEEccCCcccCC
Q psy14927        986 ENVKDPTKKEELSCDALLVCVGRRPYTH 1013 (1074)
Q Consensus       986 ~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 1013 (1074)
                      .+      +.++.+|.||+|+|..|...
T Consensus        96 ~~------g~~~~~~~vv~AtG~~~~~~  117 (311)
T 2q0l_A           96 ED------GKTFEAKSVIIATGGSPKRT  117 (311)
T ss_dssp             TT------SCEEEEEEEEECCCEEECCC
T ss_pred             cC------CCEEECCEEEECCCCCCCCC
Confidence            33      35799999999999887654

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=93.57  E-value=0.12  Score=58.92  Aligned_cols=83  Identities=11%  Similarity=0.077  Sum_probs=58.4

Q ss_pred             hhHHhhcCCcEEEEecCCccCCCCCCHHHHHH-------------HHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeec
Q psy14927        922 GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQ-------------FQRILGKQGMQFKLGTKVTGASKSGDNITVTIENV  988 (1074)
Q Consensus       922 A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~-------------~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~  988 (1074)
                      |..|...+.+|||+++.+.+.  ...+.+...             ..+.+++.||+++.+++|+.++.++.  .|++.+ 
T Consensus        25 A~~L~~~~~~itlie~~~~~~--y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V~~id~~~~--~v~~~~-   99 (385)
T 3klj_A           25 AKAALGKCDDITMINSEKYLP--YYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFATSIDPNNK--LVTLKS-   99 (385)
T ss_dssp             HHHHTTTCSCEEEECSSSSCC--BCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCEEEEETTTT--EEEETT-
T ss_pred             HHHHhCCCCEEEEEECCCCCC--cccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEEEEEECCCC--EEEECC-
Confidence            455566788999998887653  111222221             24566788999999999999987654  344443 


Q ss_pred             cCCCCceEEEcCEEEEccCCcccCCc
Q psy14927        989 KDPTKKEELSCDALLVCVGRRPYTHN 1014 (1074)
Q Consensus       989 ~~~g~~~~i~~D~vi~a~G~~p~~~~ 1014 (1074)
                           +.++.+|.+|+|||.+|....
T Consensus       100 -----g~~~~yd~lvlAtG~~p~~p~  120 (385)
T 3klj_A          100 -----GEKIKYEKLIIASGSIANKIK  120 (385)
T ss_dssp             -----SCEEECSEEEECCCEEECCCC
T ss_pred             -----CCEEECCEEEEecCCCcCCCC
Confidence                 458999999999999887643

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=93.57  E-value=0.079  Score=61.30  Aligned_cols=54  Identities=19%  Similarity=0.224  Sum_probs=45.3

Q ss_pred             hhhHHHHhhhCCeEEEee-eEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCC
Q psy14927        845 TGGIAHLFKSNKVTQLNG-HGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       845 ~~~~~~~l~~~gV~~~~g-~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      ...+.+.+++.||+++.+ .|+.++++.+.+...+|...++.+|.+|+++|.+|+
T Consensus       203 ~~~l~~~l~~~GV~~~~~~~v~~v~~~~~~~~~~~g~~~~i~~d~vi~~~G~~~~  257 (430)
T 3hyw_A          203 KRLVEDLFAERNIDWIANVAVKAIEPDKVIYEDLNGNTHEVPAKFTMFMPSFQGP  257 (430)
T ss_dssp             HHHHHHHHHHTTCEEECSCEEEEECSSEEEEECTTSCEEEEECSEEEEECEEECC
T ss_pred             HHHHHHHHHhCCeEEEeCceEEEEeCCceEEEeeCCCceEeecceEEEeccCCCc
Confidence            344667788899999999 688999988887777776678999999999998874

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=93.53  E-value=0.076  Score=61.56  Aligned_cols=53  Identities=11%  Similarity=0.083  Sum_probs=40.1

Q ss_pred             hhhHHHHhhhCCeEEEee-eEEEecCCeEEEEe--CCCC---eeEEEcCeEEEccCCCC
Q psy14927        845 TGGIAHLFKSNKVTQLNG-HGKITGPNTVTVIK--SDGS---TEEVKTKNILIATGSEV  897 (1074)
Q Consensus       845 ~~~~~~~l~~~gV~~~~g-~v~~id~~~~~v~~--~~G~---~~~i~~d~lIIATG~~p  897 (1074)
                      ...+.+.+++.||+++.+ .++.++++.+.+..  .+|.   ..++.+|.+++++|..+
T Consensus       211 ~~~~~~~l~~~gI~~~~~~~v~~v~~~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~  269 (437)
T 3sx6_A          211 KGILTKGLKEEGIEAYTNCKVTKVEDNKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKG  269 (437)
T ss_dssp             HHHHHHHHHHTTCEEECSEEEEEEETTEEEEEEECTTSCEEEEEEEECSEEEEECCEEC
T ss_pred             HHHHHHHHHHCCCEEEcCCEEEEEECCeEEEEecccCCccccceEEEEeEEEEcCCCcC
Confidence            344667788899999999 58888888766543  3432   36799999999999765

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=93.43  E-value=0.017  Score=68.44  Aligned_cols=52  Identities=19%  Similarity=0.271  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccC
Q psy14927        948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVG 1007 (1074)
Q Consensus       948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G 1007 (1074)
                      ..+.+.+.+.+.+.|+++++++.|++|..+++.  +++.+      +.++.+|.||.++.
T Consensus       222 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~~--v~~~~------G~~~~ad~vI~t~P  273 (513)
T 4gde_A          222 GGIWIAVANTLPKEKTRFGEKGKVTKVNANNKT--VTLQD------GTTIGYKKLVSTMA  273 (513)
T ss_dssp             HHHHHHHHHTSCGGGEEESGGGCEEEEETTTTE--EEETT------SCEEEEEEEEECSC
T ss_pred             HHHHHHHHHHHHhcCeeeecceEEEEEEccCCE--EEEcC------CCEEECCEEEECCC
Confidence            345666677788889999999999999986654  44444      46899999998765

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=93.42  E-value=0.049  Score=48.66  Aligned_cols=88  Identities=16%  Similarity=0.167  Sum_probs=52.1

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhH
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRV   85 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~   85 (1074)
                      +...|++++|+..|+++-..+                    ++++..+..+|..+...|++++|.++|.++-....    
T Consensus        14 ~~~~~~~~~A~~~~~~al~~~--------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----   69 (111)
T 2l6j_A           14 LFKQGLYREAVHCYDQLITAQ--------------------PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS----   69 (111)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHC--------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS----
T ss_pred             HHHcCCHHHHHHHHHHHHhcC--------------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC----
Confidence            345667777777776665222                    33466677777777777777777777766544311    


Q ss_pred             hhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHH
Q psy14927         86 LCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFY  128 (1074)
Q Consensus        86 l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y  128 (1074)
                        ..+++..         -..+.+.+|..+...|+++.|++.|
T Consensus        70 --~~~~~~~---------~~~~~~~~~~~~~~~~~~~~a~~~~  101 (111)
T 2l6j_A           70 --TAEHVAI---------RSKLQYRLELAQGAVGSVQIPVVEV  101 (111)
T ss_dssp             --STTSHHH---------HHHHHHHHHHHHHHHHCCCCCSSSS
T ss_pred             --CccHHHH---------HHHHHHHHHHHHHHHHhHhhhHhHH
Confidence              0001100         0345667788888887777666543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=93.41  E-value=0.54  Score=41.60  Aligned_cols=81  Identities=21%  Similarity=0.090  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHhh-----CH---HHHHHHHHHcCCHHHHHHHHH----hcC-CcHHHHHHHHHHHh
Q psy14927        625 VLLKWWAQYIESTEDMDLAMKYYEEAR-----DY---LSMVRVLCFLQDFSRAAELAN----ASG-DTAAAYHLARQYEN  691 (1074)
Q Consensus       625 ~l~~~~a~~~e~~~~~~~A~~~y~~ag-----~~---~~ai~~~~~~~~~~~a~~v~~----~~~-~~~~~~~~A~~~~~  691 (1074)
                      ..+...|......|+|++|+.+|.++-     ++   -....+|...++|++|....+    ..+ .......+|..+..
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~   84 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF   84 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            456667777778888888888888872     22   233445777888888887663    222 23333477888888


Q ss_pred             cCCHHHHHHHHHHc
Q psy14927        692 SGQFDEAIHFYSVA  705 (1074)
Q Consensus       692 ~g~~~~A~~~~~ka  705 (1074)
                      .|++++|.++|.++
T Consensus        85 ~~~~~~A~~~~~~~   98 (118)
T 1elw_A           85 LNRFEEAKRTYEEG   98 (118)
T ss_dssp             TTCHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHH
Confidence            88888888877655

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=93.39  E-value=0.26  Score=57.50  Aligned_cols=65  Identities=20%  Similarity=0.331  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHhCCCE--EEeCceEEEEEecCC--eEEEEEeeccCCCCceEEEcCEEEEccC--CcccCC
Q psy14927        948 GEVAKQFQRILGKQGMQ--FKLGTKVTGASKSGD--NITVTIENVKDPTKKEELSCDALLVCVG--RRPYTH 1013 (1074)
Q Consensus       948 ~~~~~~~~~~l~~~gV~--i~~~~~v~~i~~~~~--~~~v~~~~~~~~g~~~~i~~D~vi~a~G--~~p~~~ 1013 (1074)
                      ..+.+.+.+.+++.|+.  +++++.|..+...++  ...|++.+.. +|+..++.+|.||+|+|  ..|+..
T Consensus       101 ~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~-~g~~~~~~~d~VVvAtG~~s~p~~p  171 (464)
T 2xve_A          101 EVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHT-TDTIYSEEFDYVVCCTGHFSTPYVP  171 (464)
T ss_dssp             HHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETT-TTEEEEEEESEEEECCCSSSSBCCC
T ss_pred             HHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcC-CCceEEEEcCEEEECCCCCCCCccC
Confidence            34556677777888998  999999999987655  5567666522 23346799999999999  677654

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=93.38  E-value=0.092  Score=48.66  Aligned_cols=30  Identities=13%  Similarity=-0.078  Sum_probs=25.9

Q ss_pred             hcCChHHHHHHHHHHHhcCChHHHHHHHHH
Q psy14927        101 ASGDTAAAYHLARQYENSGQFDEAIHFYSV  130 (1074)
Q Consensus       101 ~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~  130 (1074)
                      .+.+..+.+.+|..+...|++++|++.|.+
T Consensus        47 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~   76 (121)
T 1hxi_A           47 EPEREEAWRSLGLTQAENEKDGLAIIALNH   76 (121)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            456788899999999999999999988654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=93.23  E-value=0.15  Score=56.83  Aligned_cols=86  Identities=21%  Similarity=0.197  Sum_probs=67.8

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHhhC-------------------------hhhhhhHhhccCCHHHHHHHHHh---
Q psy14927         50 PVLLKWWAQYIESTEDMDLAMKYYEEARD-------------------------YLSMVRVLCFLQDFSRAAELANA---  101 (1074)
Q Consensus        50 ~~l~~~~a~~~e~~~~~~~A~~~y~~a~d-------------------------~~~~vr~l~~~~~~~~a~~i~~~---  101 (1074)
                      ...+...|..+...|+|++|..+|.++=.                         +.++..+|..+|++++|.+.++.   
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~  258 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT  258 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44577789999999999999999998643                         23556668889999999887763   


Q ss_pred             --cCChHHHHHHHHHHHhcCChHHHHHHHHHhCChH
Q psy14927        102 --SGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCG  135 (1074)
Q Consensus       102 --~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~  135 (1074)
                        +.+..+.+.+|..|...|++++|++.|.++-..+
T Consensus       259 ~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~  294 (338)
T 2if4_A          259 EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA  294 (338)
T ss_dssp             HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence              4677888899999999999999999988876554

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=93.18  E-value=0.14  Score=57.86  Aligned_cols=118  Identities=13%  Similarity=0.020  Sum_probs=82.3

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhCh-----
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDY-----   79 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~-----   79 (1074)
                      .+...|++++|+..|+++-......+.  ...+.....  .......++..+|..+...|+|++|.++|.++=..     
T Consensus       232 ~~~~~g~~~~Ai~~y~kAl~~~~~~~~--~~~~~~~~~--~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~  307 (370)
T 1ihg_A          232 TFFKSQNWEMAIKKYTKVLRYVEGSRA--AAEDADGAK--LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNT  307 (370)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHH--HSCHHHHGG--GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHhhcCcc--ccChHHHHH--HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhH
Confidence            456789999999999988743212110  001111110  11234668888999999999999999999987543     


Q ss_pred             ---hhhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHHHHHhcCChHHHHH
Q psy14927         80 ---LSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLARQYENSGQFDEAIH  126 (1074)
Q Consensus        80 ---~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~~~~~~g~~~~Ai~  126 (1074)
                         ..+..+|..+|++++|.+..+.     +.+......++..+...++.+++.+
T Consensus       308 ~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          308 KALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence               3455668899999999887663     4677788889988888888877654

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=93.18  E-value=0.33  Score=56.32  Aligned_cols=64  Identities=22%  Similarity=0.212  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCC-ceEEEcCEEEEccCC--cccCC
Q psy14927        949 EVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTK-KEELSCDALLVCVGR--RPYTH 1013 (1074)
Q Consensus       949 ~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~-~~~i~~D~vi~a~G~--~p~~~ 1013 (1074)
                      .+.+.+.+..++.++.++++++|+.+...++...|++.+.. +|+ ..++.+|.||+|+|.  .|+..
T Consensus       116 ~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~-~G~~~~~~~~d~VVvAtG~~s~p~~p  182 (447)
T 2gv8_A          116 TIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTK-AGSPISKDIFDAVSICNGHYEVPYIP  182 (447)
T ss_dssp             HHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESS-TTCCEEEEEESEEEECCCSSSSBCBC
T ss_pred             HHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecC-CCCeeEEEEeCEEEECCCCCCCCCCC
Confidence            45566667777778889999999999987777777776521 233 347999999999998  66553

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=93.16  E-value=0.6  Score=42.12  Aligned_cols=82  Identities=16%  Similarity=0.188  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHhh-----C---HHHHHHHHHHcCCHHHHHHHHH----hc-CCcHHHHHHHHHHH
Q psy14927        624 RVLLKWWAQYIESTEDMDLAMKYYEEAR-----D---YLSMVRVLCFLQDFSRAAELAN----AS-GDTAAAYHLARQYE  690 (1074)
Q Consensus       624 ~~l~~~~a~~~e~~~~~~~A~~~y~~ag-----~---~~~ai~~~~~~~~~~~a~~v~~----~~-~~~~~~~~~A~~~~  690 (1074)
                      +..+...|......|+|++|+.+|.++-     +   +-....+|...+++++|.+..+    .. ........+|..+.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS   91 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence            3566677777888889999998888762     2   2233455778888888887663    22 22333347788888


Q ss_pred             hcCCHHHHHHHHHHc
Q psy14927        691 NSGQFDEAIHFYSVA  705 (1074)
Q Consensus       691 ~~g~~~~A~~~~~ka  705 (1074)
                      ..|++++|..+|.++
T Consensus        92 ~~~~~~~A~~~~~~~  106 (131)
T 2vyi_A           92 SLNKHVEAVAYYKKA  106 (131)
T ss_dssp             HTTCHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHH
Confidence            888888887777654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=93.14  E-value=0.36  Score=52.00  Aligned_cols=66  Identities=15%  Similarity=-0.096  Sum_probs=52.0

Q ss_pred             CChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHH
Q psy14927         48 KDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHF  127 (1074)
Q Consensus        48 ~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~  127 (1074)
                      .+...+...|..+...|++++|..+|.++=..                     .+.+..+.+.+|..|.+.|++++|++.
T Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---------------------~p~~~~~~~~la~~~~~~~~~~~A~~~   60 (281)
T 2c2l_A            2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---------------------NPLVAVYYTNRALCYLKMQQPEQALAD   60 (281)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------CSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------CCccHHHHHHHHHHHHHhcCHHHHHHH
Confidence            34567778888888999999999988765332                     334667788999999999999999998


Q ss_pred             HHHhCCh
Q psy14927        128 YSVAGSC  134 (1074)
Q Consensus       128 y~~a~~~  134 (1074)
                      |.++-..
T Consensus        61 ~~~al~~   67 (281)
T 2c2l_A           61 CRRALEL   67 (281)
T ss_dssp             HHHHTTS
T ss_pred             HHHHHHh
Confidence            8776543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=93.09  E-value=0.25  Score=45.23  Aligned_cols=56  Identities=16%  Similarity=0.063  Sum_probs=37.8

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCCh---HHHHHHHHHHHhcCChHHHHHHHHH
Q psy14927         54 KWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDT---AAAYHLARQYENSGQFDEAIHFYSV  130 (1074)
Q Consensus        54 ~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~---~~~~~la~~~~~~g~~~~Ai~~y~~  130 (1074)
                      -..|..+...|++++|.++|.++-..                     .+.+.   .+.+.+|..+...|++++|+++|.+
T Consensus         6 ~~~a~~~~~~~~~~~A~~~~~~~~~~---------------------~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~   64 (129)
T 2xev_A            6 YNVAFDALKNGKYDDASQLFLSFLEL---------------------YPNGVYTPNALYWLGESYYATRNFQLAEAQFRD   64 (129)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH---------------------CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHH---------------------CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            34456666666666666666543211                     12333   5788999999999999999998765

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=92.87  E-value=0.22  Score=57.95  Aligned_cols=118  Identities=11%  Similarity=0.056  Sum_probs=80.3

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhC------
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARD------   78 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d------   78 (1074)
                      .+...|++++|+..|+++-.....-+...-+.+..+..+     ...++..+|..+...|+|++|+.+|.++=.      
T Consensus       277 ~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~-----~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~  351 (457)
T 1kt0_A          277 VYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESF-----LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANE  351 (457)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHH-----HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH
Confidence            356788999999999987643322111000011111111     146788889999999999999999998633      


Q ss_pred             --hhhhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHHHHHhcCChHHHHHH
Q psy14927         79 --YLSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLARQYENSGQFDEAIHF  127 (1074)
Q Consensus        79 --~~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~~~~~~g~~~~Ai~~  127 (1074)
                        +.....+|..+|++++|....+.     +.+..+...++..+...|++++|.+-
T Consensus       352 ~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~  407 (457)
T 1kt0_A          352 KGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRR  407 (457)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence              34556668999999999887763     45667788999999999998887653

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=92.76  E-value=0.34  Score=55.36  Aligned_cols=59  Identities=14%  Similarity=0.276  Sum_probs=46.5

Q ss_pred             CCHHHHHHHHHHHHhCCCEEEeCceEEEEEec----CCeEEEEEeeccCCCCceEEEcCEEEEccCCccc
Q psy14927        946 IDGEVAKQFQRILGKQGMQFKLGTKVTGASKS----GDNITVTIENVKDPTKKEELSCDALLVCVGRRPY 1011 (1074)
Q Consensus       946 ~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~----~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~ 1011 (1074)
                      ....+.+.+.+.+++.||++++++.++++..+    ++++.|++.+      + ++.+|.||+|+|..|.
T Consensus       107 ~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~------g-~i~ad~VVlAtG~~s~  169 (401)
T 2gqf_A          107 GAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNS------T-QWQCKNLIVATGGLSM  169 (401)
T ss_dssp             CTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETT------E-EEEESEEEECCCCSSC
T ss_pred             CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECC------C-EEECCEEEECCCCccC
Confidence            45677788888999999999999999999865    4445554322      2 7999999999998874

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=92.73  E-value=0.55  Score=42.50  Aligned_cols=81  Identities=22%  Similarity=0.359  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHhh-----C---HHHHHHHHHHcCCHHHHHHHHHh-----cC--C-----cHHHHH
Q psy14927        625 VLLKWWAQYIESTEDMDLAMKYYEEAR-----D---YLSMVRVLCFLQDFSRAAELANA-----SG--D-----TAAAYH  684 (1074)
Q Consensus       625 ~l~~~~a~~~e~~~~~~~A~~~y~~ag-----~---~~~ai~~~~~~~~~~~a~~v~~~-----~~--~-----~~~~~~  684 (1074)
                      ..+...|......|+|++|+.+|.++=     +   +-....+|...++|++|....+.     ..  +     ......
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence            456667777778888888888888762     2   22344557778888888866631     11  1     223337


Q ss_pred             HHHHHHhcCCHHHHHHHHHHc
Q psy14927        685 LARQYENSGQFDEAIHFYSVA  705 (1074)
Q Consensus       685 ~A~~~~~~g~~~~A~~~~~ka  705 (1074)
                      +|..+...|++++|.++|.++
T Consensus        85 la~~~~~~~~~~~A~~~~~~~  105 (131)
T 1elr_A           85 IGNSYFKEEKYKDAIHFYNKS  105 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHH
Confidence            788888888888888887654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=92.44  E-value=0.36  Score=42.68  Aligned_cols=51  Identities=18%  Similarity=0.248  Sum_probs=41.1

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHh
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEA   76 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a   76 (1074)
                      +...|++++|+..|+++-..+                    ++++..|..+|..+...|++++|.++|.++
T Consensus        17 ~~~~g~~~~A~~~~~~al~~~--------------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   67 (100)
T 3ma5_A           17 HLKHDNASRALALFEELVETD--------------------PDYVGTYYHLGKLYERLDRTDDAIDTYAQG   67 (100)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS--------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC--------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            456788888888888776333                    455778999999999999999999999874

>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B

Probab=92.38  E-value=1.8  Score=48.87  Aligned_cols=145  Identities=11%  Similarity=0.131  Sum_probs=97.9

Q ss_pred             HHHHHHhhhhHHHH-HHHH-HHHHhhhc--HHHHHHHHHHhhCHHHHHHHHHHcCCHHHHHHHHHhcCCcH------HHH
Q psy14927        614 KQIILILIIYRVLL-KWWA-QYIESTED--MDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTA------AAY  683 (1074)
Q Consensus       614 ~~~~~~~~~~~~l~-~~~a-~~~e~~~~--~~~A~~~y~~ag~~~~ai~~~~~~~~~~~a~~v~~~~~~~~------~~~  683 (1074)
                      =|+.|+....|+++ ..-- .|...+..  .-...-+.+-+++|+..|.-. .+++|++++-++=...+.+      ...
T Consensus       174 dAllLA~~gg~el~~~~vq~~Y~~k~~~~~~~~rll~~iv~~n~~d~V~~~-~l~~WkE~La~i~t~a~~e~~ef~~Lc~  252 (399)
T 2pm7_A          174 EAMVIALDSNNERLKESVKNAYFAKYGSKSSLSRILYSISKREVDDLVENL-DVSQWKFISKAIQNLYPNDIAQRNEMMI  252 (399)
T ss_dssp             HHHHHHTTCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHTTCCHHHHHHB-CGGGHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHhcccCchHHHHHHHHHccCHHHHHhcC-ChhhHHHHHHHHHhcCCccHhHHHHHHH
Confidence            34446656677777 4333 35555542  444556788889999988864 6999999998884333322      223


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHcCCHHHHHHH-hccHH-------------------HHHHHHHHh-------------CC
Q psy14927        684 HLARQYENSGQFDEAIHFYSVAGSCGNAVRL-CGQLD-------------------AVESIASEL-------------NV  730 (1074)
Q Consensus       684 ~~A~~~~~~g~~~~A~~~~~kag~~~~Av~m-a~~w~-------------------~a~~~A~~~-------------~~  730 (1074)
                      .+|+-|+..|+.+.|.=||+-||++++.+.+ .+...                   ....+.|+.             ..
T Consensus       253 ~LG~RL~~~g~~~~A~lCYi~Ag~~dk~v~iW~~~~~~~~~~~~~~~~s~~~~~~~~Lqe~iEkv~vl~~a~~~~~~~~~  332 (399)
T 2pm7_A          253 KLGDRMKENGHRQDSLTLYLAAGSLDKVASIWLSEFPDLEDKLKKDNKTIYEAHSECMTEFIERFTVFSNFINGSSTINN  332 (399)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHSHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTSCC---CCC
T ss_pred             HHHHHHHhCCChhhhhHHHHhhCCHHHHHHHHHHhcchhhhccccccCCcccccHHHHHHHHHHHHHHHHHHhcCCCcCc
Confidence            8899999999999999999999999999998 22111                   222333321             01


Q ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy14927        731 QSDQDLILKCASYFARREHHDRAVQMYAI  759 (1074)
Q Consensus       731 ~~~~~~~~~~a~~~~~~~~~~~Ai~~y~~  759 (1074)
                      +.....+..+|.-|...|+.+.|.++...
T Consensus       333 ~~l~~~~~eYA~lLA~qG~l~~A~~yL~~  361 (399)
T 2pm7_A          333 EQLIAKFLEFINLTTSTGNFELATEFLNS  361 (399)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            12336677888888888888888777765

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=92.06  E-value=0.048  Score=64.05  Aligned_cols=76  Identities=20%  Similarity=0.174  Sum_probs=60.5

Q ss_pred             HHHHHHhccCHHHHHHHHHHhhC--------hhhhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHHHHHhcCChH
Q psy14927         56 WAQYIESTEDMDLAMKYYEEARD--------YLSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLARQYENSGQFD  122 (1074)
Q Consensus        56 ~a~~~e~~~~~~~A~~~y~~a~d--------~~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~~~~~~g~~~  122 (1074)
                      .|..+...|++++|.++|.++=.        +.++..++..+|++++|.+..+.     +.+..+.+.+|..|..+|+++
T Consensus        12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~   91 (477)
T 1wao_1           12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR   91 (477)
T ss_dssp             SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence            35566678999999999998633        24566678889999999887763     467778889999999999999


Q ss_pred             HHHHHHHHh
Q psy14927        123 EAIHFYSVA  131 (1074)
Q Consensus       123 ~Ai~~y~~a  131 (1074)
                      +|+++|.++
T Consensus        92 eA~~~~~~a  100 (477)
T 1wao_1           92 AALRDYETV  100 (477)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999987654

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=92.03  E-value=1  Score=43.91  Aligned_cols=80  Identities=21%  Similarity=0.098  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHh-----h---------------CHHHHHHHHHHcCCHHHHHHHHH----h------
Q psy14927        626 LLKWWAQYIESTEDMDLAMKYYEEA-----R---------------DYLSMVRVLCFLQDFSRAAELAN----A------  675 (1074)
Q Consensus       626 l~~~~a~~~e~~~~~~~A~~~y~~a-----g---------------~~~~ai~~~~~~~~~~~a~~v~~----~------  675 (1074)
                      .+...|.-+...|+|++|+..|.+|     .               -|-+.-.++..+++|++|+..+.    -      
T Consensus        13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e   92 (159)
T 2hr2_A           13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE   92 (159)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence            4445566666677777777777766     2               33445556777777777776552    1      


Q ss_pred             -cCC-cHHH----HHHHHHHHhcCCHHHHHHHHHHc
Q psy14927        676 -SGD-TAAA----YHLARQYENSGQFDEAIHFYSVA  705 (1074)
Q Consensus       676 -~~~-~~~~----~~~A~~~~~~g~~~~A~~~~~ka  705 (1074)
                       .++ ...-    ...|..|...|++++|+.+|-++
T Consensus        93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA  128 (159)
T 2hr2_A           93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV  128 (159)
T ss_dssp             TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence             222 2333    47789999999999999988766

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=91.98  E-value=11  Score=43.94  Aligned_cols=64  Identities=8%  Similarity=-0.027  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHhcCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHhHHHHhhcCHHHHHHHHHHHHHHHHhc
Q psy14927        233 KEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKH  306 (1074)
Q Consensus       233 ~~l~~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~  306 (1074)
                      ++++..-++|+...      ++..++-.+|.++-   +...+...-++.| ..+||-..+..++..+...+...
T Consensus       354 ~~~~~~yid~e~~~------~~~~~aR~l~er~~---k~~~lw~~~~~fE-~~~G~~~~~r~v~~~~~~~~~~~  417 (493)
T 2uy1_A          354 TLLKEEFFLFLLRI------GDEENARALFKRLE---KTSRMWDSMIEYE-FMVGSMELFRELVDQKMDAIKAD  417 (493)
T ss_dssp             HHHHHHHHHHHHHH------TCHHHHHHHHHHSC---CBHHHHHHHHHHH-HHHSCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHc------CCHHHHHHHHHHHH---HHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHhccc
Confidence            45555555555443      22233334444442   1356677778889 99999999999999999999854

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=91.92  E-value=0.031  Score=62.80  Aligned_cols=38  Identities=11%  Similarity=0.038  Sum_probs=30.3

Q ss_pred             CCCCCC-CCCCEEEecccCCCCCcHHHHHHHHHHHHHHhh
Q psy14927       1033 NSRFQT-VIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1033 d~~~~t-s~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                      +.+++| .++|+|.+|+.++.. --..|..+|.+|+.|++
T Consensus       320 ~~tle~k~~~~Lf~AGqi~G~~-Gy~eAaa~Gl~AG~naa  358 (443)
T 3g5s_A          320 GETLEFREAEGLYAAGVLAGVE-GYLESAATGFLAGLNAA  358 (443)
T ss_dssp             CTTSEETTEEEEEECGGGGTBC-SHHHHHHHHHHHHHHHH
T ss_pred             ChhceecCCCCEEECccccccH-HHHHHHHhHHHHHHHHH
Confidence            367887 699999999998863 35578888888888765

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=91.90  E-value=0.75  Score=53.96  Aligned_cols=53  Identities=19%  Similarity=0.167  Sum_probs=39.8

Q ss_pred             hhhhhhHHHHhhhCCeEEEee-eEEEec--CCeEE-EEeCCCCeeEEEcCeEEEccCCC
Q psy14927        842 KALTGGIAHLFKSNKVTQLNG-HGKITG--PNTVT-VIKSDGSTEEVKTKNILIATGSE  896 (1074)
Q Consensus       842 ~~l~~~~~~~l~~~gV~~~~g-~v~~id--~~~~~-v~~~~G~~~~i~~d~lIIATG~~  896 (1074)
                      ..+...+.+.+++.|++++++ .|+.|.  .+.++ |++++|  +++.+|.||.+++..
T Consensus       221 ~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g--~~~~ad~VV~~a~~~  277 (501)
T 4dgk_A          221 GALVQGMIKLFQDLGGEVVLNARVSHMETTGNKIEAVHLEDG--RRFLTQAVASNADVV  277 (501)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTS--CEEECSCEEECCC--
T ss_pred             cchHHHHHHHHHHhCCceeeecceeEEEeeCCeEEEEEecCC--cEEEcCEEEECCCHH
Confidence            455566778888899999999 577764  34443 778888  789999999998764

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=91.88  E-value=0.26  Score=54.73  Aligned_cols=121  Identities=12%  Similarity=0.084  Sum_probs=64.4

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccchhhhH-hhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHh-----hC
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQHVPRM-LLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEA-----RD   78 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a-----~d   78 (1074)
                      .+...|++++|+..|+++-.....-+.. ..+++......+.    ..++..+|..+...|+|++|+++|.++     .+
T Consensus       188 ~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~----~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~  263 (338)
T 2if4_A          188 SLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVK----NPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKN  263 (338)
T ss_dssp             HTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHH----THHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTC
T ss_pred             HHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            3457899999999999987544222211 1122222222221    248889999999999999999999986     22


Q ss_pred             ---hhhhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHHHHH-hcCChHHHHHHHH
Q psy14927         79 ---YLSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLARQYE-NSGQFDEAIHFYS  129 (1074)
Q Consensus        79 ---~~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~~~~-~~g~~~~Ai~~y~  129 (1074)
                         +..+..+|..+|++++|.+..+.     +.+..+...+++... ..+..+.+.++|.
T Consensus       264 ~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~  323 (338)
T 2if4_A          264 PKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYK  323 (338)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               24555668999999999988774     345556666666644 3345555555543

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=91.64  E-value=0.007  Score=68.78  Aligned_cols=217  Identities=16%  Similarity=0.171  Sum_probs=140.9

Q ss_pred             HHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHH
Q psy14927         37 TDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYE  116 (1074)
Q Consensus        37 ~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~  116 (1074)
                      ...+++++..++...+ ...|+=+-..|.|+.|--+|..-.+|-.+.-+|.++|+++.|++-+|+.++.-..+.+-.-|.
T Consensus       132 L~elEefl~~~N~A~i-q~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACv  210 (624)
T 3lvg_A          132 LAELEEFINGPNNAHI-QQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACV  210 (624)
T ss_dssp             SSTTTSTTSCCSSSCT-HHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHH
T ss_pred             HHHHHHHHcCCCcccH-HHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHh
Confidence            3445555555444333 456888889999999999999999998888889999999999999999988877777666666


Q ss_pred             hcCCh-----------------HHHHHHHHHhCChHHHHHHHHHh-C----chHHHHHHh---hhcCchhHHHHHHHH--
Q psy14927        117 NSGQF-----------------DEAIHFYSVAGSCGNAVRLCKEQ-A----LDDQLWNLA---LSAGPSEQIEAATYL--  169 (1074)
Q Consensus       117 ~~g~~-----------------~~Ai~~y~~a~~~~~A~~la~~~-~----~~~~~~~l~---~~~~~~~~~~~A~~~--  169 (1074)
                      ..+++                 ++-|++|..-|.|+|-|.|-+.- |    -|.-+..|+   ....|+-+-+.=..|  
T Consensus       211 d~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY~PeKlmEHlklf~s  290 (624)
T 3lvg_A          211 DGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS  290 (624)
T ss_dssp             HSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSSCTTHHHHHHTTSSS
T ss_pred             CchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            65554                 66678888888888877665531 1    233333332   334443333222222  


Q ss_pred             -----------ccCC-hhHHHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHH
Q psy14927        170 -----------ETIE-PDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYV  237 (1074)
Q Consensus       170 -----------e~~~-~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~  237 (1074)
                                 |+.. +.+++-||.+=..+..|+...+..+..                .=|.+...++.....+-|||.
T Consensus       291 riNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~----------------Aw~h~~Fkdii~KVaN~EiyY  354 (624)
T 3lvg_A          291 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTD----------------AWKEGQFKDIITKVANVELYY  354 (624)
T ss_dssp             SSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHH----------------HCCGGGGTTTGGGCSCSHHHH
T ss_pred             hccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChh----------------hccHHHHHHHHHHcchHHHHH
Confidence                       2322 577788888888888887666553200                012233455666777889999


Q ss_pred             HHHHHHhcCCCCCChhH---------HHHHHHHHHccCCHHH
Q psy14927        238 MAANYLQSSDWKSQPEL---------LKSIISFYSKGKAPHL  270 (1074)
Q Consensus       238 ~aa~yl~~~~~~~~~~~---------~~~i~~~Y~k~~~~~~  270 (1074)
                      +|.+|....-..--.+.         ..+++++++|.++..-
T Consensus       355 KAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpL  396 (624)
T 3lvg_A          355 RAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPL  396 (624)
T ss_dssp             HHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGG
T ss_pred             HHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchh
Confidence            99999876522111111         1244777777776543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=91.59  E-value=0.38  Score=40.80  Aligned_cols=62  Identities=27%  Similarity=0.446  Sum_probs=48.5

Q ss_pred             ChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHH
Q psy14927         49 DPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFY  128 (1074)
Q Consensus        49 ~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y  128 (1074)
                      ++..+..+|..+...|++++|.++|.++=..                     .+.+....+.+|..+...|++++|+++|
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~   66 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---------------------DPNNAEAWYNLGNAYYKQGDYDEAIEYY   66 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhc---------------------CCCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            3567778899999999999999998765432                     2335567788999999999999999887


Q ss_pred             HHh
Q psy14927        129 SVA  131 (1074)
Q Consensus       129 ~~a  131 (1074)
                      .++
T Consensus        67 ~~a   69 (91)
T 1na3_A           67 QKA   69 (91)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>3mzk_B Protein transport protein SEC16; alpha-helical-stack, beta-propeller; 2.69A {Saccharomyces cerevisiae}

Probab=91.56  E-value=3.2  Score=47.39  Aligned_cols=122  Identities=7%  Similarity=0.093  Sum_probs=87.5

Q ss_pred             HHHHHHHHHhhCHHHHHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHHHhcCCH----------HHHHHHHHHcCCHHH
Q psy14927        641 DLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQF----------DEAIHFYSVAGSCGN  710 (1074)
Q Consensus       641 ~~A~~~y~~ag~~~~ai~~~~~~~~~~~a~~v~~~~~~~~~~~~~A~~~~~~g~~----------~~A~~~~~kag~~~~  710 (1074)
                      .+-+.-++..|+.++|+++....++|-.|+=++...++..-...+-+|+.+.-..          -...=+-+-+|+..+
T Consensus       154 ~~~I~~~Ll~G~~e~Av~~al~~~lwa~ALlLAs~~g~e~~~~V~~~y~~~~~~~~~~~~~~~~~~Lr~Ly~v~sGn~~~  233 (441)
T 3mzk_B          154 QMRVLAFLQTGNHDEALRLALSKRDYAIALLVGSLMGKDRWSEVIQKYLYEGFTAGPNDQKELAHFLLLIFQVFVGNSKM  233 (441)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHCC------CTHHHHHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHhCCcHHHHHHHHHhcCHHHHHHHHHHHHHhhcccCCccccccccHHHHHHHHHcCCHHH
Confidence            4456678889999999999999999999999996665544444555555532111          122445567899999


Q ss_pred             HHHH-----------hccHHHHHHHHHHhCCccc----------HHHHHHHHHHHHHcCCHHHHHHHHHHhCC
Q psy14927        711 AVRL-----------CGQLDAVESIASELNVQSD----------QDLILKCASYFARREHHDRAVQMYAIARR  762 (1074)
Q Consensus       711 Av~m-----------a~~w~~a~~~A~~~~~~~~----------~~~~~~~a~~~~~~~~~~~Ai~~y~~ag~  762 (1074)
                      +|.-           ..+|.+...+.=.+.+...          .+.+..+|..|...|+.+.|.-||.-++.
T Consensus       234 ~V~~l~~~~~~~~~~l~~Wre~lA~IlsN~~~~~~~~~~~p~~~~~~l~~LGd~L~~~g~~~aAhiCYL~a~~  306 (441)
T 3mzk_B          234 AIKSFYTNNETSQWASENWKSIVAAVLINIPENNEDPLLIPPVVLEFLIEFGIFLTKKGLTAAASTLFIIGNV  306 (441)
T ss_dssp             HHHHHHHCHHHHHHHHHSHHHHHHHHHHTSCCCSSCTTCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred             HHHHhccCCccccchHhHHHHHHHHHHhCCCCchhhcccccchHHHHHHHHHHHHHhCCCcchhHHhHhccCC
Confidence            9873           3589988776655543322          47889999999999998888888876665

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=91.49  E-value=0.47  Score=41.64  Aligned_cols=53  Identities=11%  Similarity=0.171  Sum_probs=41.9

Q ss_pred             hhhhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927         79 YLSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus        79 ~~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                      +..+..++...|++++|....+.     +.+..+.+.+|..|...|++++|+++|.++
T Consensus         9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   66 (112)
T 2kck_A            9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYV   66 (112)
T ss_dssp             GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            34566778888999998887652     456778889999999999999999887653

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=91.49  E-value=0.94  Score=44.21  Aligned_cols=83  Identities=12%  Similarity=0.152  Sum_probs=60.8

Q ss_pred             hHHHHHHHHHHHHhhhcHHHHHHHHHHhh-----CH---HHHHHH-HHHcCCH--HHHHHHHH----hc-CCcHHHHHHH
Q psy14927        623 YRVLLKWWAQYIESTEDMDLAMKYYEEAR-----DY---LSMVRV-LCFLQDF--SRAAELAN----AS-GDTAAAYHLA  686 (1074)
Q Consensus       623 ~~~l~~~~a~~~e~~~~~~~A~~~y~~ag-----~~---~~ai~~-~~~~~~~--~~a~~v~~----~~-~~~~~~~~~A  686 (1074)
                      ++..+...|......|+|++|+.+|.++=     ++   -....+ |...+++  ++|....+    .. +.......+|
T Consensus        43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  122 (177)
T 2e2e_A           43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLA  122 (177)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            34588888999999999999999998872     22   233344 6678887  88887763    22 3334444889


Q ss_pred             HHHHhcCCHHHHHHHHHHc
Q psy14927        687 RQYENSGQFDEAIHFYSVA  705 (1074)
Q Consensus       687 ~~~~~~g~~~~A~~~~~ka  705 (1074)
                      ..+...|++++|+.+|.++
T Consensus       123 ~~~~~~g~~~~A~~~~~~a  141 (177)
T 2e2e_A          123 SDAFMQANYAQAIELWQKV  141 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHH
Confidence            9999999999999888765

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=91.14  E-value=0.15  Score=65.65  Aligned_cols=86  Identities=15%  Similarity=0.032  Sum_probs=51.1

Q ss_pred             hhhhhccccchHHHHHHHhh------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEec
Q psy14927        796 VVLNTLGNCAAVQANYHLAT------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITG  868 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id  868 (1074)
                      +|||||||..|+.+|..+.+      ++++..+.        ...+...   .     ....++..||+|+.+ .++.+.
T Consensus       334 ~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~--------~~~~~~~---~-----e~~~~~~~Gv~~~~~~~~~~i~  397 (1025)
T 1gte_A          334 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKGF--------VNIRAVP---E-----EVELAKEEKCEFLPFLSPRKVI  397 (1025)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCG--------GGCCSCH---H-----HHHHHHHTTCEEECSEEEEEEE
T ss_pred             cEEEECCChHHHHHHHHHHHcCCCEEEEEEecCh--------hhCCCCH---H-----HHHHHHHcCCEEEeCCCceEEE
Confidence            59999999999999999887      22222110        0111111   1     113456679999887 344443


Q ss_pred             --CCeEE-EEeC------C-------CCeeEEEcCeEEEccCCCC
Q psy14927        869 --PNTVT-VIKS------D-------GSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       869 --~~~~~-v~~~------~-------G~~~~i~~d~lIIATG~~p  897 (1074)
                        ...++ |.+.      +       |+..++.+|.||+|+|..|
T Consensus       398 ~~~g~v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~  442 (1025)
T 1gte_A          398 VKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVL  442 (1025)
T ss_dssp             EETTEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCEEC
T ss_pred             ccCCeEEEEEEEEeEEcCCCCcccCCCceEEEECCEEEECCCCCC
Confidence              22221 2221      2       2234799999999999975

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=91.04  E-value=0.58  Score=52.74  Aligned_cols=54  Identities=13%  Similarity=0.203  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcc
Q psy14927        948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRP 1010 (1074)
Q Consensus       948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p 1010 (1074)
                      ..+...+.+.+.+.||+++.+++|++++.  ++ .|++.+      +.++.+|.||.|+|..+
T Consensus       107 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~~-~v~~~~------g~~~~ad~vV~AdG~~s  160 (379)
T 3alj_A          107 SHLHDALVNRARALGVDISVNSEAVAADP--VG-RLTLQT------GEVLEADLIVGADGVGS  160 (379)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCEEEEET--TT-EEEETT------SCEEECSEEEECCCTTC
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEe--CC-EEEECC------CCEEEcCEEEECCCccH
Confidence            55677778888889999999999999987  33 566543      34799999999999653

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=91.02  E-value=0.59  Score=39.55  Aligned_cols=54  Identities=26%  Similarity=0.340  Sum_probs=40.7

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhCh
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDY   79 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~   79 (1074)
                      +...|++++|+.+|+++-..+                    +.++..+..+|..+...|++++|.++|.++-..
T Consensus        19 ~~~~~~~~~A~~~~~~a~~~~--------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~   72 (91)
T 1na3_A           19 YYKQGDYDEAIEYYQKALELD--------------------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (91)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC--------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHhcC--------------------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            455677788887777765222                    345778889999999999999999998876443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=90.87  E-value=0.53  Score=41.56  Aligned_cols=62  Identities=11%  Similarity=0.001  Sum_probs=48.8

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHH
Q psy14927         50 PVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYS  129 (1074)
Q Consensus        50 ~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~  129 (1074)
                      ...|...|..+...|++++|.++|.++-..                     .+.+..+.+.+|..|...|++++|+++|.
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   62 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA---------------------QPQNPVGYSNKAMALIKLGEYTQAIQMCQ   62 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------------------CCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            456777888888899999999888765433                     23456778899999999999999999887


Q ss_pred             HhC
Q psy14927        130 VAG  132 (1074)
Q Consensus       130 ~a~  132 (1074)
                      ++-
T Consensus        63 ~al   65 (111)
T 2l6j_A           63 QGL   65 (111)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=90.65  E-value=0.11  Score=59.92  Aligned_cols=68  Identities=9%  Similarity=0.033  Sum_probs=50.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHcCCHHHHHHHhccHHHHHHHHHHhCCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy14927        684 HLARQYENSGQFDEAIHFYSVAGSCGNAVRLCGQLDAVESIASELNVQS---DQDLILKCASYFARREHHDRAVQMYAIA  760 (1074)
Q Consensus       684 ~~A~~~~~~g~~~~A~~~~~kag~~~~Av~ma~~w~~a~~~A~~~~~~~---~~~~~~~~a~~~~~~~~~~~Ai~~y~~a  760 (1074)
                      .+|..+.+.|+|++|+.+|.++-                .+-++..++.   +...+..+|.-+...|++++|..+|.+ 
T Consensus       345 nLa~~y~~~g~~~eA~~~~~~aL----------------~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~-  407 (433)
T 3qww_A          345 QAMGVCLYMQDWEGALKYGQKII----------------KPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKK-  407 (433)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHH----------------HHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-
T ss_pred             HHHHHHHhhcCHHHHHHHHHHHH----------------HHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHH-
Confidence            88999999999999999998763                3334444433   336677888888899999999888855 


Q ss_pred             CCHHHHHHHHHHc
Q psy14927        761 RRYDQALSLIQTK  773 (1074)
Q Consensus       761 g~~~~Ai~~~~~~  773 (1074)
                           |+++....
T Consensus       408 -----Al~i~~~~  415 (433)
T 3qww_A          408 -----AIAIMEVA  415 (433)
T ss_dssp             -----HHHHHHHH
T ss_pred             -----HHHHHHHH
Confidence                 45555444

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=90.48  E-value=0.68  Score=50.35  Aligned_cols=85  Identities=12%  Similarity=0.085  Sum_probs=52.3

Q ss_pred             hhHHhhcCCcEEEEecCCc----------cC-CCC-CCHHHHHHHHHHHHhCC-CEEEeCceEEEEEecCC-eEEEEEee
Q psy14927        922 GSVWGRLGAEVTAIEFMNA----------IG-GMG-IDGEVAKQFQRILGKQG-MQFKLGTKVTGASKSGD-NITVTIEN  987 (1074)
Q Consensus       922 A~~l~~~G~~Vtlv~~~~~----------~~-~~~-~~~~~~~~~~~~l~~~g-V~i~~~~~v~~i~~~~~-~~~v~~~~  987 (1074)
                      |..+++.|.+|+|+++...          +. .+. .++++.+...+.+.+.+ +.++. ..+..+...++ ...+.+.+
T Consensus        22 A~~lar~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~  100 (304)
T 4fk1_A           22 SLVLGRARKQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYE-KTVVMITKQSTGLFEIVTKD  100 (304)
T ss_dssp             HHHHHHTTCCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEE-CCEEEEEECTTSCEEEEETT
T ss_pred             HHHHHHCCCCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEe-eEEEEeeecCCCcEEEEECC
Confidence            5567789999999987532          11 011 22455555556665554 55554 44555554333 34554433


Q ss_pred             ccCCCCceEEEcCEEEEccCCcccCC
Q psy14927        988 VKDPTKKEELSCDALLVCVGRRPYTH 1013 (1074)
Q Consensus       988 ~~~~g~~~~i~~D~vi~a~G~~p~~~ 1013 (1074)
                            +.++.+|.||+|||.+|...
T Consensus       101 ------g~~~~a~~liiATGs~p~~p  120 (304)
T 4fk1_A          101 ------HTKYLAERVLLATGMQEEFP  120 (304)
T ss_dssp             ------CCEEEEEEEEECCCCEEECC
T ss_pred             ------CCEEEeCEEEEccCCccccc
Confidence                  46899999999999988654

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=90.30  E-value=0.071  Score=60.27  Aligned_cols=35  Identities=14%  Similarity=0.150  Sum_probs=30.6

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhc-ccccccc
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQA-GDKGVKL  828 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~-~~~g~~~  828 (1074)
                      ..+|+|||||++|+.||+.|++     +++|+. +..||..
T Consensus        44 ~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~   84 (376)
T 2e1m_A           44 PKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRI   84 (376)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTC
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCce
Confidence            3459999999999999999998     899998 8888754

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=90.25  E-value=0.063  Score=63.16  Aligned_cols=55  Identities=18%  Similarity=0.309  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927        949 EVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus       949 ~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
                      .+.+.+.+.+.+  .+|++++.|++|..+++++.|++.+   .++..++.+|.||++++.
T Consensus       240 ~l~~~l~~~l~~--~~i~~~~~V~~i~~~~~~v~v~~~~---g~~~~~~~ad~vI~a~p~  294 (489)
T 2jae_A          240 RIYYAFQDRIGT--DNIVFGAEVTSMKNVSEGVTVEYTA---GGSKKSITADYAICTIPP  294 (489)
T ss_dssp             HHHHHHHHHHCG--GGEETTCEEEEEEEETTEEEEEEEE---TTEEEEEEESEEEECSCH
T ss_pred             HHHHHHHHhcCC--CeEEECCEEEEEEEcCCeEEEEEec---CCeEEEEECCEEEECCCH
Confidence            344555555432  6799999999999887887777765   222367999999999875

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=89.89  E-value=0.068  Score=63.45  Aligned_cols=35  Identities=17%  Similarity=0.182  Sum_probs=29.4

Q ss_pred             chhhhhhccccchHHHHHHHhh------hhhhhcccccccc
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT------KLFTQAGDKGVKL  828 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~------~l~e~~~~~g~~~  828 (1074)
                      +.+|+|||||++||+||+.|++      +++|+.+..||.+
T Consensus         8 ~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~   48 (516)
T 1rsg_A            8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRL   48 (516)
T ss_dssp             EEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCce
Confidence            3459999999999999999986      6888888777643

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=89.71  E-value=0.07  Score=62.04  Aligned_cols=35  Identities=11%  Similarity=0.034  Sum_probs=30.8

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhcccccccc
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL  828 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~  828 (1074)
                      +.+|+|||||++|++||+.|++     +++|+.+..||..
T Consensus         5 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~   44 (453)
T 2yg5_A            5 QRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRT   44 (453)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCce
Confidence            3459999999999999999998     8999988888765

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=89.51  E-value=0.52  Score=53.84  Aligned_cols=214  Identities=14%  Similarity=0.150  Sum_probs=131.2

Q ss_pred             hhcCCHHHHHHHHHHcCcccchhhhHhhh--------cHHHHHHHhh----cCCChHHHHHHHHHHHhccCHHHHHHHHH
Q psy14927          7 MKNGDIDRAIRMFEKAETHQQHVPRMLLE--------NTDKLEKYII----QSKDPVLLKWWAQYIESTEDMDLAMKYYE   74 (1074)
Q Consensus         7 ~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~--------~~~~~~~~~~----~~~~~~l~~~~a~~~e~~~~~~~A~~~y~   74 (1074)
                      |+.|.|+|=+.+.|.+-..+..=+-||+.        .+.++-+.+.    +.+-|++    -+++|...-|.++.=.|.
T Consensus       240 E~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY~PeKlmEHlklf~sriNipKv----iracE~ahLW~ElvfLY~  315 (624)
T 3lvg_A          240 QDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKV----LRAAEQAHLWAELVFLYD  315 (624)
T ss_dssp             STTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSSCTTHHHHHHTTSSSSSCCTTT----HHHHTTTTCHHHHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccHHHH----HHHHHHHhhHHHHHHHHh
Confidence            56788888888888887666443445431        2333333332    2444444    457889999999999999


Q ss_pred             HhhChhhhhhHhhccCCHHHH------HHHHHhcCChHHHHHHHHHHH---------------hcCChHHHHHHHHHhCC
Q psy14927         75 EARDYLSMVRVLCFLQDFSRA------AELANASGDTAAAYHLARQYE---------------NSGQFDEAIHFYSVAGS  133 (1074)
Q Consensus        75 ~a~d~~~~vr~l~~~~~~~~a------~~i~~~~~~~~~~~~la~~~~---------------~~g~~~~Ai~~y~~a~~  133 (1074)
                      .-.+|++++-..-.  .+..|      .+++.+-.+.+..|..=.+|.               ..=|....|+++.++++
T Consensus       316 ~ydE~DnA~ltMi~--h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~  393 (624)
T 3lvg_A          316 KYEEYDNAIITMMN--HPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQ  393 (624)
T ss_dssp             HHTCHHHHHHTTTS--CHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTC
T ss_pred             cchhHHHHHHHHHh--CChhhccHHHHHHHHHHcchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCC
Confidence            99999888766322  11111      112223345555554444444               22344666666666665


Q ss_pred             hH------------------HHH-HHHHHhCchHHHHHHhhhcCchhHHHHHHHHccCC---h-hHHHHHHHHhCChHHH
Q psy14927        134 CG------------------NAV-RLCKEQALDDQLWNLALSAGPSEQIEAATYLETIE---P-DKAVLLYHKAGALHKA  190 (1074)
Q Consensus       134 ~~------------------~A~-~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~~---~-~~A~~ly~kaG~~~kA  190 (1074)
                      ..                  +|+ +|.-+-.-.+.+-+-......-+.+..|+-+|+-.   | .-|..+|.|.+++.+|
T Consensus       394 LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qs  473 (624)
T 3lvg_A          394 LPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQS  473 (624)
T ss_dssp             GGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHH
T ss_pred             chhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHH
Confidence            32                  111 11111111111111122234455677899999954   4 3399999999999999


Q ss_pred             HHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcC
Q psy14927        191 LDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSS  246 (1074)
Q Consensus       191 l~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~  246 (1074)
                      +.+|-+                    .+-+..+|+.|..|++.++-.-+.+|+-..
T Consensus       474 i~l~Kk--------------------DklykDAietAa~S~~~elaeeLL~yFv~~  509 (624)
T 3lvg_A          474 VELCKK--------------------DSLYKDAMQYASESKDTELAEELLQWFLQE  509 (624)
T ss_dssp             SSCSST--------------------TCCTTGGGTTTTTCCCTTHHHHHHHHHHHH
T ss_pred             HHHHHh--------------------cccHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            999877                    677888999999999988888777776543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=89.46  E-value=1.4  Score=48.01  Aligned_cols=95  Identities=14%  Similarity=0.185  Sum_probs=51.3

Q ss_pred             hhhcCCHHHHHHHHHHc-------Ccccchh--hhHhh--hcHHHHHHHhhc---CCC------hHHHHHHHHH--HHhc
Q psy14927          6 TMKNGDIDRAIRMFEKA-------ETHQQHV--PRMLL--ENTDKLEKYIIQ---SKD------PVLLKWWAQY--IEST   63 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~-------~~~~~~~--~~~~~--~~~~~~~~~~~~---~~~------~~l~~~~a~~--~e~~   63 (1074)
                      ++..|++++|.++|+++       +..+..+  .++++  ++.+.+..++.+   ..+      ..++.++++.  ...+
T Consensus       110 ~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~  189 (310)
T 3mv2_B          110 QAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFAT  189 (310)
T ss_dssp             HHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHh
Confidence            45568899999999887       2222111  33333  456666555533   221      3455555433  3333


Q ss_pred             c--CHHHHHHHHHHhhChhh-------hhhHhhccCCHHHHHHHHH
Q psy14927         64 E--DMDLAMKYYEEARDYLS-------MVRVLCFLQDFSRAAELAN  100 (1074)
Q Consensus        64 ~--~~~~A~~~y~~a~d~~~-------~vr~l~~~~~~~~a~~i~~  100 (1074)
                      |  ++..|...|...-+-..       +..++.++|++++|.++.+
T Consensus       190 g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~  235 (310)
T 3mv2_B          190 NKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVE  235 (310)
T ss_dssp             TCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHH
Confidence            3  77777777766433321       1223556777777776654

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=89.33  E-value=26  Score=40.77  Aligned_cols=95  Identities=12%  Similarity=0.115  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHhcCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHhHHHHhhcCHHHHHHHHHHHHHHHHhcCCCchH
Q psy14927        233 KEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYE  312 (1074)
Q Consensus       233 ~~l~~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~  312 (1074)
                      ..+|..-++++...      +.+..+-..|.+++........|...|..|..--++++.|...+..+++.+.+    .| 
T Consensus       286 ~~lw~~y~~~~~r~------~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~----~~-  354 (493)
T 2uy1_A          286 DLLRINHLNYVLKK------RGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD----ST-  354 (493)
T ss_dssp             HHHHHHHHHHHHHH------HCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT----CH-
T ss_pred             HHHHHHHHHHHHHc------CCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC----CH-
Confidence            46788888887655      23455555566663222233567777999944444799999999999986532    23 


Q ss_pred             HHHHHHHHHHHHHHHhhcCChHHHhhHHHHH
Q psy14927        313 TLKSSVVEKLAEVEIDEFGNYEKGLGALNEA  343 (1074)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  343 (1074)
                      ++..    .-..+.++ .|+.+.|-.++.|+
T Consensus       355 ~~~~----~yid~e~~-~~~~~~aR~l~er~  380 (493)
T 2uy1_A          355 LLKE----EFFLFLLR-IGDEENARALFKRL  380 (493)
T ss_dssp             HHHH----HHHHHHHH-HTCHHHHHHHHHHS
T ss_pred             HHHH----HHHHHHHH-cCCHHHHHHHHHHH
Confidence            2211    11223445 47777766666665

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=89.33  E-value=0.079  Score=62.06  Aligned_cols=35  Identities=17%  Similarity=0.167  Sum_probs=30.5

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhcccccccc
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL  828 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~  828 (1074)
                      ..+|+|||||++|++||+.|++     +++|+.+..||..
T Consensus        16 ~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~   55 (478)
T 2ivd_A           16 GMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAV   55 (478)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCcee
Confidence            3459999999999999999998     8999999888765

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=88.86  E-value=0.099  Score=60.91  Aligned_cols=56  Identities=16%  Similarity=0.211  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEec--CCeE-EEEEeeccCCCCceEEEcCEEEEccCCcc
Q psy14927        948 GEVAKQFQRILGKQGMQFKLGTKVTGASKS--GDNI-TVTIENVKDPTKKEELSCDALLVCVGRRP 1010 (1074)
Q Consensus       948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~--~~~~-~v~~~~~~~~g~~~~i~~D~vi~a~G~~p 1010 (1074)
                      ..+.+.+.+.+++.|+++++++.|++|..+  ++++ .|.. +      +.++.+|.||+++|..|
T Consensus       242 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~------g~~~~ad~VV~a~~~~~  300 (453)
T 2bcg_G          242 GELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-K------LGTFKAPLVIADPTYFP  300 (453)
T ss_dssp             THHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-T------TEEEECSCEEECGGGCG
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-C------CeEEECCEEEECCCccc
Confidence            467788888889999999999999999876  5543 3332 2      46799999999988754

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=88.64  E-value=0.096  Score=61.67  Aligned_cols=37  Identities=16%  Similarity=0.074  Sum_probs=0.0

Q ss_pred             cchhhhhhccccchHHHHHHHhh-----hhhhhccccccccc
Q psy14927        793 QRQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLN  829 (1074)
Q Consensus       793 ~k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~  829 (1074)
                      .+.+|+|||||++|++||+.|++     +++|+.+..||...
T Consensus        38 ~~~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~   79 (495)
T 2vvm_A           38 GPWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSW   79 (495)
T ss_dssp             CCEEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCC
T ss_pred             cCCCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcce

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=88.21  E-value=3.3  Score=48.59  Aligned_cols=52  Identities=15%  Similarity=0.206  Sum_probs=29.8

Q ss_pred             ChHHHHHHHHHHHhccCHHHHHHHHHHhhC---------hhhhhhHhhccCCHHHHHHHHH
Q psy14927         49 DPVLLKWWAQYIESTEDMDLAMKYYEEARD---------YLSMVRVLCFLQDFSRAAELAN  100 (1074)
Q Consensus        49 ~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d---------~~~~vr~l~~~~~~~~a~~i~~  100 (1074)
                      +...+..+-..+-..|++++|.+.|..-..         |..++..||..|++++|.++.+
T Consensus       104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~  164 (501)
T 4g26_A          104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA  164 (501)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence            334444555555566666666666654321         3455555666666666666654

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=88.17  E-value=0.11  Score=59.17  Aligned_cols=36  Identities=14%  Similarity=-0.054  Sum_probs=31.2

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccc
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLN  829 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~  829 (1074)
                      +.+|+|||||++|+++|+.|++     +++|+.+..||...
T Consensus        29 ~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~   69 (397)
T 3hdq_A           29 GFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAY   69 (397)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGC
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCccc
Confidence            4469999999999999999988     79999888887654

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=88.06  E-value=0.67  Score=40.26  Aligned_cols=54  Identities=19%  Similarity=0.250  Sum_probs=41.8

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChH-HHHHHHHHHHhccCHHHHHHHHHHhhC
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPV-LLKWWAQYIESTEDMDLAMKYYEEARD   78 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~a~~~e~~~~~~~A~~~y~~a~d   78 (1074)
                      .+...|++++|+..|+++-..+                    ++++. .+..+|..+...|++++|.++|.++=.
T Consensus         9 ~~~~~~~~~~A~~~~~~al~~~--------------------p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~   63 (99)
T 2kc7_A            9 ELINQGDIENALQALEEFLQTE--------------------PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE   63 (99)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC--------------------SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHC--------------------CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3456788888888887765322                    34567 889999999999999999999987643

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=88.05  E-value=6.8  Score=45.85  Aligned_cols=25  Identities=8%  Similarity=0.025  Sum_probs=15.2

Q ss_pred             CCCChhHHHHHHHHHHccCCHHHHH
Q psy14927        248 WKSQPELLKSIISFYSKGKAPHLLA  272 (1074)
Q Consensus       248 ~~~~~~~~~~i~~~Y~k~~~~~~aa  272 (1074)
                      ...+...+..++..|.++|.+++|-
T Consensus       171 ~~Pd~~ty~~Li~~~~~~g~~d~A~  195 (501)
T 4g26_A          171 VVPEEPELAALLKVSMDTKNADKVY  195 (501)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCCCHHHHHHHHHHHhhCCCHHHHH
Confidence            4455566667777776666555443

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=87.98  E-value=0.99  Score=49.01  Aligned_cols=86  Identities=16%  Similarity=0.143  Sum_probs=57.1

Q ss_pred             hhHHhhcCCcEEEEecCCccC---------------CCCC-----CHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeE
Q psy14927        922 GSVWGRLGAEVTAIEFMNAIG---------------GMGI-----DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNI  981 (1074)
Q Consensus       922 A~~l~~~G~~Vtlv~~~~~~~---------------~~~~-----~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~  981 (1074)
                      |..+++.|.+|+|+++.....               .+.+     .+++...+.+.+++.++.+.... +..+....+..
T Consensus        20 A~~la~~g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~   98 (314)
T 4a5l_A           20 AIYLGRSSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYGTTIITET-IDHVDFSTQPF   98 (314)
T ss_dssp             HHHHHHTTCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEECCC-EEEEECSSSSE
T ss_pred             HHHHHHCCCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcCcEEEEeE-EEEeecCCCce
Confidence            556778899999998754200               0112     24566777788889999988654 55555544444


Q ss_pred             EEEEeeccCCCCceEEEcCEEEEccCCcccCCc
Q psy14927        982 TVTIENVKDPTKKEELSCDALLVCVGRRPYTHN 1014 (1074)
Q Consensus       982 ~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 1014 (1074)
                      .+...      .+.++.+|.||+|||.+|....
T Consensus        99 ~~~~~------~~~~~~~~~liiATG~~~~~~~  125 (314)
T 4a5l_A           99 KLFTE------EGKEVLTKSVIIATGATAKRMH  125 (314)
T ss_dssp             EEEET------TCCEEEEEEEEECCCEEECCCC
T ss_pred             EEEEC------CCeEEEEeEEEEcccccccccC
Confidence            44332      2568999999999999886543

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=87.72  E-value=1.8  Score=51.73  Aligned_cols=60  Identities=12%  Similarity=0.152  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEecC-Ce-EEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927        948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSG-DN-ITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus       948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~-~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
                      ..+...+.+.+++.||++++++.++++..++ +. ..|.+.+.  +|+..++.+|.||+|+|..
T Consensus       255 ~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~--~g~~~~i~a~~VVlAtGg~  316 (571)
T 1y0p_A          255 AHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGM--YKGYYWVKADAVILATGGF  316 (571)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEET--TTEEEEEECSEEEECCCCC
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEeeEeEEcCCCeEEEEEEEeC--CCcEEEEECCeEEEeCCCc
Confidence            5677788888899999999999999998754 33 33555531  2444579999999999874

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=87.57  E-value=0.84  Score=51.79  Aligned_cols=43  Identities=7%  Similarity=0.187  Sum_probs=35.9

Q ss_pred             CCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927        961 QGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus       961 ~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
                      .|++++++++|+++..+++++.|++.+      +.++.+|.||.|.|..
T Consensus       110 ~~~~i~~~~~v~~i~~~~~~v~v~~~~------g~~~~ad~vV~AdG~~  152 (397)
T 2vou_A          110 GPERYHTSKCLVGLSQDSETVQMRFSD------GTKAEANWVIGADGGA  152 (397)
T ss_dssp             CSTTEETTCCEEEEEECSSCEEEEETT------SCEEEESEEEECCCTT
T ss_pred             CCcEEEcCCEEEEEEecCCEEEEEECC------CCEEECCEEEECCCcc
Confidence            489999999999999877777777654      3579999999999974

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=87.45  E-value=0.12  Score=60.88  Aligned_cols=34  Identities=26%  Similarity=0.373  Sum_probs=30.5

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhcccccccc
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL  828 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~  828 (1074)
                      .+|+|||||++||++|+.|++     +++|+.+..||..
T Consensus        14 ~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~   52 (504)
T 1sez_A           14 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKL   52 (504)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCce
Confidence            459999999999999999998     8999999888764

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=87.11  E-value=0.14  Score=60.41  Aligned_cols=56  Identities=16%  Similarity=0.376  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927        949 EVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus       949 ~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
                      .+.+.+.+.+..   +|++++.|++|..+++++.|++.+..  +...++.+|.||++++..
T Consensus       242 ~l~~~l~~~l~~---~i~~~~~V~~I~~~~~~v~v~~~~~~--~~~~~~~ad~vI~t~p~~  297 (498)
T 2iid_A          242 KLPTAMYRDIQD---KVHFNAQVIKIQQNDQKVTVVYETLS--KETPSVTADYVIVCTTSR  297 (498)
T ss_dssp             HHHHHHHHHTGG---GEESSCEEEEEEECSSCEEEEEECSS--SCCCEEEESEEEECSCHH
T ss_pred             HHHHHHHHhccc---ccccCCEEEEEEECCCeEEEEEecCC--cccceEEeCEEEECCChH
Confidence            344445454443   78999999999987777777766511  112368999999998753

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=86.64  E-value=3.1  Score=45.25  Aligned_cols=62  Identities=18%  Similarity=0.174  Sum_probs=32.2

Q ss_pred             HHHHHhhcC-CChHHHHHHHHHHHhccCHHHHHHHHHHh-------hChh---hhhhHhhccCCHHHHHHHHH
Q psy14927         39 KLEKYIIQS-KDPVLLKWWAQYIESTEDMDLAMKYYEEA-------RDYL---SMVRVLCFLQDFSRAAELAN  100 (1074)
Q Consensus        39 ~~~~~~~~~-~~~~l~~~~a~~~e~~~~~~~A~~~y~~a-------~d~~---~~vr~l~~~~~~~~a~~i~~  100 (1074)
                      .+++++... .++..+...|..++..|++++|++.+.+.       ++.+   -.|+++..+|+++.|.++.+
T Consensus        88 ~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~  160 (310)
T 3mv2_B           88 ELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFD  160 (310)
T ss_dssp             HHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            344444332 33333445566666666666666666665       2222   23444666666666666654

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=86.57  E-value=0.12  Score=59.78  Aligned_cols=29  Identities=10%  Similarity=0.131  Sum_probs=24.8

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhcc
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAG  822 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~  822 (1074)
                      +++|+||||||+|+++|+.|++     +++|+.+
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            3459999999999999999999     7888754

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=86.48  E-value=4.8  Score=46.09  Aligned_cols=68  Identities=12%  Similarity=0.114  Sum_probs=49.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHcCCHHHHHHHhccHHHHHHHHHHhCCcccH---HHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy14927        684 HLARQYENSGQFDEAIHFYSVAGSCGNAVRLCGQLDAVESIASELNVQSDQ---DLILKCASYFARREHHDRAVQMYAIA  760 (1074)
Q Consensus       684 ~~A~~~~~~g~~~~A~~~~~kag~~~~Av~ma~~w~~a~~~A~~~~~~~~~---~~~~~~a~~~~~~~~~~~Ai~~y~~a  760 (1074)
                      .+|..+...|+|++|+.+|.++                ..+-++..++..+   ..+..+|.-+...|++++|..+|.+ 
T Consensus       334 ~L~~~y~~~g~~~eA~~~~~~~----------------L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~-  396 (429)
T 3qwp_A          334 CAMDACINLGLLEEALFYGTRT----------------MEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRL-  396 (429)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHH----------------HHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-
T ss_pred             HHHHHHHhhccHHHHHHHHHHH----------------HHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHH-
Confidence            7899999999999999998776                3344444454443   6677888888889999999888755 


Q ss_pred             CCHHHHHHHHHHc
Q psy14927        761 RRYDQALSLIQTK  773 (1074)
Q Consensus       761 g~~~~Ai~~~~~~  773 (1074)
                           |++++...
T Consensus       397 -----Al~i~~~~  404 (429)
T 3qwp_A          397 -----AFDIMRVT  404 (429)
T ss_dssp             -----HHHHHHHH
T ss_pred             -----HHHHHHHh
Confidence                 45555444

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=86.41  E-value=0.16  Score=57.35  Aligned_cols=33  Identities=6%  Similarity=-0.061  Sum_probs=29.1

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhcccccccc
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL  828 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~  828 (1074)
                      +|+|||||++|+++|+.|++     +++|+.+..||..
T Consensus         3 ~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~   40 (367)
T 1i8t_A            3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNA   40 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGG
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcce
Confidence            48999999999999999988     7999988877754

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=86.29  E-value=0.2  Score=61.41  Aligned_cols=51  Identities=24%  Similarity=0.351  Sum_probs=37.6

Q ss_pred             HHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccC
Q psy14927        956 RILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVG 1007 (1074)
Q Consensus       956 ~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G 1007 (1074)
                      +.|.+ +++|++++.|++|..+++++.|++.+...++.+.++.+|.||++++
T Consensus       405 ~~La~-~l~I~l~~~V~~I~~~~~~v~V~~~~~~~~~~~~~~~Ad~VI~tvP  455 (662)
T 2z3y_A          405 VALAE-GLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLP  455 (662)
T ss_dssp             HHHTT-TCEEETTEEEEEEEEETTEEEEEEEESSCTTCEEEEEESEEEECCC
T ss_pred             HHHHh-cCceecCCeEEEEEECCCcEEEEEeecccCCCCeEEEeCEEEECCC
Confidence            33433 6799999999999988888888776522123357899999999876

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=86.28  E-value=0.17  Score=59.55  Aligned_cols=36  Identities=11%  Similarity=0.063  Sum_probs=30.6

Q ss_pred             chhhhhhccccchHHHHHHHhh------hhhhhccccccccc
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT------KLFTQAGDKGVKLN  829 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~------~l~e~~~~~g~~~~  829 (1074)
                      +.+|+|||||++|+++|+.|++      +++|+.+..||...
T Consensus         9 ~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~   50 (484)
T 4dsg_A            9 TPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSR   50 (484)
T ss_dssp             SCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeee
Confidence            3459999999999999999987      78898888887654

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=86.28  E-value=1.9  Score=46.80  Aligned_cols=84  Identities=15%  Similarity=0.119  Sum_probs=55.2

Q ss_pred             hhHHhhcCCcEEEEecCCc---cC-------CCC----CCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEee
Q psy14927        922 GSVWGRLGAEVTAIEFMNA---IG-------GMG----IDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIEN  987 (1074)
Q Consensus       922 A~~l~~~G~~Vtlv~~~~~---~~-------~~~----~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~  987 (1074)
                      |..+++.|.+|+|+++...   +.       .|.    ..+++.........+.++.+..+.......... .. +...+
T Consensus        22 A~~l~~~g~~V~liE~~~~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~   99 (312)
T 4gcm_A           22 AVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGE-YK-VINFG   99 (312)
T ss_dssp             HHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEEECCCCEEEECSS-CE-EEECS
T ss_pred             HHHHHHCCCCEEEEecCCCCCeeecccccCCcCCccccchHHHHHHHHHHHhhccccccceeeeeeeeeec-ce-eeccC
Confidence            5667889999999987531   10       011    125666666777788888888876665554432 22 22122


Q ss_pred             ccCCCCceEEEcCEEEEccCCcccCC
Q psy14927        988 VKDPTKKEELSCDALLVCVGRRPYTH 1013 (1074)
Q Consensus       988 ~~~~g~~~~i~~D~vi~a~G~~p~~~ 1013 (1074)
                            +.++.+|.+|+|||.+|...
T Consensus       100 ------~~~~~~d~liiAtGs~~~~~  119 (312)
T 4gcm_A          100 ------NKELTAKAVIIATGAEYKKI  119 (312)
T ss_dssp             ------SCEEEEEEEEECCCEEECCC
T ss_pred             ------CeEEEeceeEEcccCccCcC
Confidence                  46899999999999988654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1074
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	6e-27
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	7e-10
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	3e-04
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	8e-27
d3lada3	124	d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenas	9e-26
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	1e-25
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	3e-05
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	6e-05
d1dxla3	123	d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenas	1e-25
d1v59a3	123	d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenas	1e-24
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	7e-22
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	4e-21
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	6e-21
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	7e-09
d1feca1	240	c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas	2e-20
d1mo9a3	140	d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl c	2e-18
d1ebda3	115	d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenas	2e-17
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	2e-17
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	2e-08
d1ojta3	128	d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenas	5e-17
d1gesa3	115	d.87.1.1 (A:336-450) Glutathione reductase {Escher	5e-16
d1ojta2	125	c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase	1e-15
d1xdia2	118	d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenas	8e-15
d1nhpa3	126	d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus	9e-15
d3grsa3	115	d.87.1.1 (A:364-478) Glutathione reductase {Human	1e-14
d1onfa3	119	d.87.1.1 (A:377-495) Glutathione reductase {Plasmo	1e-14
d1aoga1	238	c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas	3e-14
d1xdia1	233	c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd	3e-14
d1xdia1	233	c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd	6e-05
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	8e-14
d1feca3	128	d.87.1.1 (A:358-485) Trypanothione reductase {Crit	9e-14
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	1e-13
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	8e-08
d3lada2	119	c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase	1e-13
d1lvla3	123	d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenas	1e-13
d1h6va3	133	d.87.1.1 (A:367-499) Mammalian thioredoxin reducta	1e-13
d1h6va1	235	c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin	4e-13
d1v59a2	122	c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase	1e-12
d1dxla2	123	c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase	3e-12
d1h6va2	122	c.3.1.5 (A:171-292) Mammalian thioredoxin reductas	3e-10
d1m6ia2	137	c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF	3e-09
d1djqa2	156	c.3.1.1 (A:490-645) Trimethylamine dehydrogenase,	3e-09
d1ebda2	117	c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase	1e-08
d1q1ra1	185	c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas	8e-08
d3grsa2	125	c.3.1.5 (A:166-290) Glutathione reductase {Human (	9e-08
d1gesa2	116	c.3.1.5 (A:147-262) Glutathione reductase {Escheri	7e-07
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	8e-07
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	3e-05
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	5e-06
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	5e-06
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	8e-06
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	1e-05
d1feca2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Crith	2e-05
d1d7ya2	121	c.3.1.5 (A:116-236) NADH-dependent ferredoxin redu	4e-05
d1lvla2	115	c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase	4e-05
d1fcda1	186	c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf	9e-05
d1xhca1	167	c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite	1e-04
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	1e-04
d1nhpa1	198	c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter	0.002
d1mo9a2	121	c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl co	0.002
d1xhca2	122	c.3.1.5 (A:104-225) NADH oxidase /nitrite reductas	0.002
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.004

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score =  107 bits (269), Expect = 6e-27
 Identities = 37/69 (53%), Positives = 50/69 (72%)

Query: 1006 VGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIV 1065
             GR P+T  L L++IG+E D+ GR+ VN RF T +  ++AIGD I GPMLAHKAE++G+ 
Sbjct: 149  KGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGPMLAHKAEEDGVA 208

Query: 1066 CVEGIAGDK 1074
            CVE +AG  
Sbjct: 209  CVEYLAGKV 217

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 57.9 bits (139), Expect = 7e-10
 Identities = 44/80 (55%), Positives = 52/80 (65%), Gaps = 1/80 (1%)

Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGT 587
           T C+EK   LGGTCLNVGCIPSKALL++SH YH          G++V  V+++L  MMG 
Sbjct: 29  TTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHE-AKHSFANHGVKVSNVEIDLAAMMGQ 87

Query: 588 KSAAVKALTGGIAHLFKSNK 607
           K  AV  LT GI  LFK NK
Sbjct: 88  KDKAVSNLTRGIEGLFKKNK 107

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 41.0 bits (95), Expect = 3e-04
 Identities = 35/75 (46%), Positives = 47/75 (62%)

Query: 824 KGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEE 883
             V+++L  MMG K  AV  LT GI  LFK NKVT + G+GK   P+ ++V   +G    
Sbjct: 75  SNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTV 134

Query: 884 VKTKNILIATGSEVT 898
           VK K+I+IATGS+V 
Sbjct: 135 VKGKHIIIATGSDVK 149

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  107 bits (268), Expect = 8e-27
 Identities = 38/70 (54%), Positives = 47/70 (67%)

Query: 1005 CVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGI 1064
             VGRRP T  LGLE+IGI+   +G + V+ + +T +PNIFAIGD + GP LAHKA  EG 
Sbjct: 148  LVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVPGPALAHKASYEGK 207

Query: 1065 VCVEGIAGDK 1074
            V  E IAG  
Sbjct: 208  VAAEAIAGHP 217

>d3lada3 d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 124

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score =  101 bits (252), Expect = 9e-26
 Identities = 41/75 (54%), Positives = 52/75 (69%)

Query: 455 YKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGA 514
             VG FPFAA+ RA   NDT GFVKV+ D  TD+VLGVH+IGP+A EL+ +  +AME+G 
Sbjct: 31  INVGVFPFAASGRAMAANDTAGFVKVIADAKTDRVLGVHVIGPSAAELVQQGAIAMEFGT 90

Query: 515 SCEDVARTCHAHPTV 529
           S ED+     AHP +
Sbjct: 91  SAEDLGMMVFAHPAL 105

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  104 bits (260), Expect = 1e-25
 Identities = 34/76 (44%), Positives = 48/76 (63%)

Query: 999  CDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHK 1058
               +   VGRRPY   LG E+IG+E D++GR+ ++ +F +  P+I  +GD   GPMLAHK
Sbjct: 154  GSEVTPFVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGPMLAHK 213

Query: 1059 AEDEGIVCVEGIAGDK 1074
            AE+EGI  VE +    
Sbjct: 214  AEEEGIAAVEMLKTGH 229

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (104), Expect = 3e-05
 Identities = 49/81 (60%), Positives = 57/81 (70%), Gaps = 2/81 (2%)

Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEG-VKLNLETMMG 586
           T CVEK   LGGTCLNVGCIPSKALLNNSH +H  H+ + + RGI+V G +K+N+     
Sbjct: 31  TACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHT-EAQKRGIDVNGDIKINVANFQK 89

Query: 587 TKSAAVKALTGGIAHLFKSNK 607
            K  AVK LTGGI  LFK NK
Sbjct: 90  AKDDAVKQLTGGIELLFKKNK 110

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (101), Expect = 6e-05
 Identities = 45/147 (30%), Positives = 61/147 (41%), Gaps = 16/147 (10%)

Query: 827 KLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEV-- 884
           K+N+      K  AVK LTGGI  LFK NKVT   G+G       + V   DG    V  
Sbjct: 81  KINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKE 140

Query: 885 ----KTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKKGSVWGRLGAEV---TAIEF 937
                 KNI++ATGSEVTPF G       + +    L + K    GRL  +    +    
Sbjct: 141 DHILDVKNIIVATGSEVTPFVGRRPYIAGLGAEKIGLEVDK---RGRLVIDDQFNSKFPH 197

Query: 938 MNAIGGMGIDGEVAKQFQRILGKQGMQ 964
           +  +G    D            ++G+ 
Sbjct: 198 IKVVG----DVTFGPMLAHKAEEEGIA 220

>d1dxla3 d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score =  100 bits (250), Expect = 1e-25
 Identities = 49/78 (62%), Positives = 65/78 (83%)

Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
           G+EY+VGKFPF ANSRAK  ++ +G VK++ +K TDK+LGVHI+ P AGELI+EA +A++
Sbjct: 28  GVEYRVGKFPFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIMAPNAGELIHEAAIALQ 87

Query: 512 YGASCEDVARTCHAHPTV 529
           Y AS ED+AR CHAHPT+
Sbjct: 88  YDASSEDIARVCHAHPTM 105

>d1v59a3 d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 98.2 bits (244), Expect = 1e-24
 Identities = 56/76 (73%), Positives = 66/76 (86%)

Query: 454 EYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYG 513
           +YK+GKFPFAANSRAKTN DT+GFVK+L D  T+++LG HIIGP AGE+I EA LA+EYG
Sbjct: 30  DYKIGKFPFAANSRAKTNQDTEGFVKILIDSKTERILGAHIIGPNAGEMIAEAGLALEYG 89

Query: 514 ASCEDVARTCHAHPTV 529
           AS EDVAR CHAHPT+
Sbjct: 90  ASAEDVARVCHAHPTL 105

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.0 bits (230), Expect = 7e-22
 Identities = 20/72 (27%), Positives = 32/72 (44%)

Query: 1003 LVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDE 1062
                 R P T +L L ++GI+ D+KG + V+    T +  I+A+GD     +L   A   
Sbjct: 144  STPHERVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVAIAA 203

Query: 1063 GIVCVEGIAGDK 1074
            G      +   K
Sbjct: 204  GRKLAHRLFEYK 215

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 91.3 bits (225), Expect = 4e-21
 Identities = 39/131 (29%), Positives = 61/131 (46%)

Query: 944  MGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALL 1003
              I   +      ++   G+    G     A K  +       +    T+   L+  +  
Sbjct: 95   DQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKP 154

Query: 1004 VCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEG 1063
            V + RRP T +L   + G+  DE+G + V+    T +P ++AIGD + G MLAHKA +EG
Sbjct: 155  VEIPRRPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGAMLAHKASEEG 214

Query: 1064 IVCVEGIAGDK 1074
            +V  E IAG K
Sbjct: 215  VVVAERIAGHK 225

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 90.8 bits (224), Expect = 6e-21
 Identities = 27/75 (36%), Positives = 43/75 (57%)

Query: 1000 DALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKA 1059
            + ++    R P    +  E+ G+   ++G + V+ + +T +P+I+AIGD +  PMLAHKA
Sbjct: 151  NCIIAAGSRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPMLAHKA 210

Query: 1060 EDEGIVCVEGIAGDK 1074
              EG V  E  AG K
Sbjct: 211  VHEGHVAAENCAGHK 225

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 55.3 bits (132), Expect = 7e-09
 Identities = 39/121 (32%), Positives = 57/121 (47%), Gaps = 2/121 (1%)

Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGT 587
              VE+  TLGG CLNVGCIPSKALL+N+          + A GI+    +L+++ +   
Sbjct: 32  VAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVR--HLAANGIKYPEPELDIDMLRAY 89

Query: 588 KSAAVKALTGGIAHLFKSNKALKIITKQIILILIIYRVLLKWWAQYIESTEDMDLAMKYY 647
           K   V  LTGG+A + KS K   I      L      V L     Y ++    +  +  +
Sbjct: 90  KDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAF 149

Query: 648 E 648
           +
Sbjct: 150 K 150

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 89.2 bits (220), Expect = 2e-20
 Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 8/88 (9%)

Query: 995  EELSCDALLVCVGRRP--------YTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAI 1046
            E L  + +L+  G  P         +  L LE+ G+E  + G + V++  +T + NI+AI
Sbjct: 148  ETLDTEYILLATGSWPQHLGIEVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAI 207

Query: 1047 GDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
            GD     ML   A +EG   V+ +  +K
Sbjct: 208  GDVTDRVMLTPVAINEGAAFVDTVFANK 235

>d1mo9a3 d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 80.9 bits (199), Expect = 2e-18
 Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 3/81 (3%)

Query: 459 KFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCED 518
                  +  K      GF K++ D  T KVLG H +G  A +      + ++ G + ++
Sbjct: 51  SDRTMLYAFGKGTAHMSGFQKIVIDAKTRKVLGAHHVGYGAKDAFQYLNVLIKQGLTVDE 110

Query: 519 VARTC--HAHPTVCVEKNDTL 537
           +        +PT    +   L
Sbjct: 111 LGDMDELFLNPT-HFIQLSRL 130

>d1ebda3 d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 115

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 77.4 bits (190), Expect = 2e-17
 Identities = 38/76 (50%), Positives = 50/76 (65%)

Query: 454 EYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYG 513
           +    KFPFAAN RA   NDTDGF+K++  K    ++G  IIGP A ++I E  LA+E G
Sbjct: 28  DVIAAKFPFAANGRALALNDTDGFLKLVVRKEDGVIIGAQIIGPNASDMIAELGLAIEAG 87

Query: 514 ASCEDVARTCHAHPTV 529
            + ED+A T HAHPT+
Sbjct: 88  MTAEDIALTIHAHPTL 103

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 81.2 bits (199), Expect = 2e-17
 Identities = 40/212 (18%), Positives = 60/212 (28%), Gaps = 47/212 (22%)

Query: 910  IVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGG-----------MGIDGEVAKQFQRIL 958
            I    GA      +    +G     ++    +GG           +  D        R  
Sbjct: 46   IFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTF 105

Query: 959  GKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEEL--------------------- 997
              Q     +  KV G  +  D               +                       
Sbjct: 106  SGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHTV 165

Query: 998  -------SCDALLVCVGRRPYTHNLGLEEIGIEKD--------EKGRVPVNSRFQTVIPN 1042
                       L++ VG  P T ++  +    E           KG V VN   QT +PN
Sbjct: 166  EAAGKVFKAKNLILAVGAGPGTLDVPEQPRSAELAKILGLDLGPKGEVLVNEYLQTSVPN 225

Query: 1043 IFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
            ++A+GD I GPM   KA   G      + G+K
Sbjct: 226  VYAVGDLIGGPMEMFKARKSGCYAARNVMGEK 257

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 54.6 bits (130), Expect = 2e-08
 Identities = 10/72 (13%), Positives = 29/72 (40%)

Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGT 587
            + V++   LGG+C +  C+P     + +    +A +   +    ++    + ++ ++  
Sbjct: 68  QLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIKEVVDL 127

Query: 588 KSAAVKALTGGI 599
             A      G +
Sbjct: 128 FRAGRNGPHGIM 139

>d1ojta3 d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 128

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 76.2 bits (187), Expect = 5e-17
 Identities = 28/78 (35%), Positives = 43/78 (55%)

Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
             +     FP+AA+ RA  N     F K++ D  T +++G  I+GP  G++I E  LA+E
Sbjct: 28  ARKITKANFPWAASGRAIANGCDKPFTKLIFDAETGRIIGGGIVGPNGGDMIGEVCLAIE 87

Query: 512 YGASCEDVARTCHAHPTV 529
            G    D+ +T H HPT+
Sbjct: 88  MGCDAADIGKTIHPHPTL 105

>d1gesa3 d.87.1.1 (A:336-450) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 115

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 72.9 bits (178), Expect = 5e-16
 Identities = 22/80 (27%), Positives = 38/80 (47%)

Query: 450 GPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLA 509
               + KV K  F A   A T +     +K++     +K++G+H IG    E++    +A
Sbjct: 28  YGDDQVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFGMDEMLQGFAVA 87

Query: 510 MEYGASCEDVARTCHAHPTV 529
           ++ GA+ +D   T   HPT 
Sbjct: 88  LKMGATKKDFDNTVAIHPTA 107

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 125

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 72.6 bits (177), Expect = 1e-15
 Identities = 31/128 (24%), Positives = 48/128 (37%), Gaps = 19/128 (14%)

Query: 897  VTPFPGIEVDEETIVSSTGALSLKK-GSVWGRLGAEVTAIEFMNAIGGMGIDGEVA---- 951
            VT  P I  ++  I+ S+GAL+LK+       +G  +  +E       +G   +V     
Sbjct: 1    VTKLPFIP-EDPRIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMD 59

Query: 952  -----------KQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCD 1000
                       K +Q+    +     + TK        D + VT E       KE    D
Sbjct: 60   GLMQGADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGAN--APKEPQRYD 117

Query: 1001 ALLVCVGR 1008
            A+LV  GR
Sbjct: 118  AVLVAAGR 125

>d1xdia2 d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 118

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 69.7 bits (170), Expect = 8e-15
 Identities = 21/77 (27%), Positives = 40/77 (51%)

Query: 453 IEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEY 512
           +  +    P   N+RAK +    GFVK+   + T  V+G  ++ P A ELI    +A++ 
Sbjct: 29  VAARTIMLPLRTNARAKMSEMRHGFVKIFCRRSTGVVIGGVVVAPIASELILPIAVAVQN 88

Query: 513 GASCEDVARTCHAHPTV 529
             +  ++A+T   +P++
Sbjct: 89  RITVNELAQTLAVYPSL 105

>d1nhpa3 d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 126

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 69.6 bits (170), Expect = 9e-15
 Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 3/80 (3%)

Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGP-AAGELINEAVLAM 510
           G E K               +    + K++ D  T ++LG  ++        IN   LA+
Sbjct: 29  GKETKAVTVVED-YLMDFNPDKQKAWFKLVYDPETTQILGAQLMSKADLTANINAISLAI 87

Query: 511 EYGASCEDVARTCHA-HPTV 529
           +   + ED+A       P  
Sbjct: 88  QAKMTIEDLAYADFFFQPAF 107

>d3grsa3 d.87.1.1 (A:364-478) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.1 bits (168), Expect = 1e-14
 Identities = 20/80 (25%), Positives = 33/80 (41%)

Query: 450 GPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLA 509
                 K     F     A T   T   +K++     +KV+G+H+ G    E++    +A
Sbjct: 28  YGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCDEMLQGFAVA 87

Query: 510 MEYGASCEDVARTCHAHPTV 529
           ++ GA+  D   T   HPT 
Sbjct: 88  VKMGATKADFDNTVAIHPTS 107

>d1onfa3 d.87.1.1 (A:377-495) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 119

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 69.1 bits (168), Expect = 1e-14
 Identities = 18/93 (19%), Positives = 39/93 (41%), Gaps = 2/93 (2%)

Query: 439 LTDKVLGVHIIGPGIEYKVGKFPFA--ANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIG 496
           L+++          ++    KF     +    +       ++K++     + + G+HIIG
Sbjct: 19  LSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYLKLVCVGKDELIKGLHIIG 78

Query: 497 PAAGELINEAVLAMEYGASCEDVARTCHAHPTV 529
             A E++    +A++  A+ +D   T   HPT 
Sbjct: 79  LNADEIVQGFAVALKMNATKKDFDETIPIHPTA 111

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 71.2 bits (173), Expect = 3e-14
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 1005 CVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGI 1064
              GR P T +L L+  G+     G V V+   +T + NI+AIGD  +  ML   A +E  
Sbjct: 166  PNGRSPRTKDLQLQNAGVMIK-NGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAA 224

Query: 1065 VCVEGIAGDK 1074
              V+ + G  
Sbjct: 225  ALVDTVFGTT 234

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 71.3 bits (173), Expect = 3e-14
 Identities = 20/65 (30%), Positives = 31/65 (47%)

Query: 1010 PYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEG 1069
            P T  LGLE +GI+      + V+   +T+   I+A GDC     LA  A  +G + +  
Sbjct: 164  PNTSGLGLERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCTGLLPLASVAAMQGRIAMYH 223

Query: 1070 IAGDK 1074
              G+ 
Sbjct: 224  ALGEG 228

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 43.5 bits (101), Expect = 6e-05
 Identities = 18/118 (15%), Positives = 36/118 (30%)

Query: 529 VCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGTK 588
           V V   D +GG  +   C+PSK  + ++               I+ +  K++L  +    
Sbjct: 30  VTVIDCDGIGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKISLPQIHARV 89

Query: 589 SAAVKALTGGIAHLFKSNKALKIITKQIILILIIYRVLLKWWAQYIESTEDMDLAMKY 646
                A +  I     S     I  +  ++         +  A   + +     A   
Sbjct: 90  KTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVV 147

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 69.7 bits (169), Expect = 8e-14
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 6/76 (7%)

Query: 1005 CVGRRPYTHNLGLEEIG------IEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHK 1058
              G             G        K     + ++ R QT + N++AIGD    PMLAH+
Sbjct: 141  ATGSSSVELPRRPRTKGFNLECLDLKMNGAAIAIDERCQTSMHNVWAIGDVAGEPMLAHR 200

Query: 1059 AEDEGIVCVEGIAGDK 1074
            A  +G +  E IAG  
Sbjct: 201  AMAQGEMVAEIIAGKA 216

>d1feca3 d.87.1.1 (A:358-485) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 128

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 67.0 bits (163), Expect = 9e-14
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 1/77 (1%)

Query: 454 EYKVGKFPFAANSRAKTNNDTD-GFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEY 512
           +  V +  F       + +      V+++ +    +VLGVH++G ++ E+I    + ++ 
Sbjct: 30  QVAVYESSFTPLMHNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPEIIQSVAICLKM 89

Query: 513 GASCEDVARTCHAHPTV 529
           GA   D   T   HPT 
Sbjct: 90  GAKISDFYNTIGVHPTS 106

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 69.2 bits (168), Expect = 1e-13
 Identities = 21/72 (29%), Positives = 31/72 (43%)

Query: 1003 LVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDE 1062
                 R P   N+ LE  G++ +EKG + V+    T I  I+A+GD      L   A   
Sbjct: 140  RPSHPREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAVELTPVAVAA 199

Query: 1063 GIVCVEGIAGDK 1074
            G    E +  +K
Sbjct: 200  GRRLSERLFNNK 211

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 51.9 bits (123), Expect = 8e-08
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 2/79 (2%)

Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGT 587
              +E    LGGTC+NVGC+P K + + +      H       G +    K N ET++ +
Sbjct: 28  CALIEA-KELGGTCVNVGCVPKKVMWHAAQIREAIHM-YGPDYGFDTTINKFNWETLIAS 85

Query: 588 KSAAVKALTGGIAHLFKSN 606
           ++A +  +     ++   N
Sbjct: 86  RTAYIDRIHTSYENVLGKN 104

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 119

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 66.3 bits (161), Expect = 1e-13
 Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 22/125 (17%)

Query: 899  PFPGIEVDEETIVSSTGALSLKK-GSVWGRLGAEVTAIEFMNAIGGMGID---------- 947
            P P   VD++ IV STGAL  +      G +GA V  +E  +    +G +          
Sbjct: 1    PAP---VDQDVIVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKF 57

Query: 948  -----GEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDAL 1002
                  +VAK+ Q+IL KQG++  LG +VTG       +TV   + +    ++  + D L
Sbjct: 58   LPAVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEG---EKSQAFDKL 114

Query: 1003 LVCVG 1007
            +V VG
Sbjct: 115  IVAVG 119

>d1lvla3 d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 66.3 bits (161), Expect = 1e-13
 Identities = 32/76 (42%), Positives = 43/76 (56%)

Query: 454 EYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYG 513
           +  V +FPFAAN RA +     GFV+V+  +    +LG   +G A  EL      ++E G
Sbjct: 30  DCIVAQFPFAANGRAMSLESKSGFVRVVARRDNHLILGWQAVGVAVSELSTAFAQSLEMG 89

Query: 514 ASCEDVARTCHAHPTV 529
           A  EDVA T HAHPT+
Sbjct: 90  ACLEDVAGTIHAHPTL 105

>d1h6va3 d.87.1.1 (A:367-499) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 133

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 66.7 bits (162), Expect = 1e-13
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 1/75 (1%)

Query: 455 YKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGA 514
           Y    +P      ++ NN     V        ++V+G H++GP AGE+      A++ G 
Sbjct: 36  YHSFFWPLEWTVPSRDNNKCYAKVICNLKD-NERVVGFHVLGPNAGEVTQGFAAALKCGL 94

Query: 515 SCEDVARTCHAHPTV 529
           + + +  T   HP  
Sbjct: 95  TKQQLDSTIGIHPVC 109

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.8 bits (164), Expect = 4e-13
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 1008 RRPYTHNLGLEEIGIEKDEK-GRVPVNSRFQTVIPNIFAIGDCIHGPM-LAHKAEDEGIV 1065
            R   T  +GLE +G++ +EK G++PV    QT +P I+AIGD + G + L   A   G +
Sbjct: 162  RDSCTRTIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEGKLELTPVAIQAGRL 221

Query: 1066 CVEGIAGDK 1074
              + + G  
Sbjct: 222  LAQRLYGGS 230

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.3 bits (153), Expect = 1e-12
 Identities = 45/121 (37%), Positives = 58/121 (47%), Gaps = 17/121 (14%)

Query: 901  PGIEVDEETIVSSTGALSLKK-GSVWGRLGAEVTAIEFMNAIGGMGIDGEVA-------- 951
            PGIE+DEE IVSSTGALSLK+       +G  +  +E  +    +G    V         
Sbjct: 1    PGIEIDEEKIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA 60

Query: 952  -------KQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPT-KKEELSCDALL 1003
                   K  Q+ L KQG+ FKL TKV  A ++ D   V I      T K+E L  + LL
Sbjct: 61   SMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLL 120

Query: 1004 V 1004
            V
Sbjct: 121  V 121

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 123

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 62.6 bits (151), Expect = 3e-12
 Identities = 53/121 (43%), Positives = 72/121 (59%), Gaps = 19/121 (15%)

Query: 901  PGIEVDEETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGG 943
            PG+ +DE+ IVSSTGAL+L +                 GSVWGR+G+EVT +EF + I  
Sbjct: 3    PGVTIDEKKIVSSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP 62

Query: 944  MGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALL 1003
              +D E+ KQFQR L KQGM+FKL TKV G   SGD + +T+E      ++  +  D +L
Sbjct: 63   T-MDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAG-GEQTIIEADVVL 120

Query: 1004 V 1004
            V
Sbjct: 121  V 121

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.6 bits (136), Expect = 3e-10
 Identities = 25/126 (19%), Positives = 44/126 (34%), Gaps = 23/126 (18%)

Query: 901  PGIEVDEETIVSSTGALSLKK-GSVWGRLGAEVTAIEFMNA--------------IGGMG 945
            PG   D+E  +SS    SL         +GA   A+E                  I   G
Sbjct: 1    PG---DKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRG 57

Query: 946  IDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN----ITVTIENVKDPTKKEELSCDA 1001
             D ++A +    + + G++F      T   +        + VT ++     +  E   + 
Sbjct: 58   FDQDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSE-ETIEDEFNT 116

Query: 1002 LLVCVG 1007
            +L+ VG
Sbjct: 117  VLLAVG 122

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (130), Expect = 3e-09
 Identities = 12/86 (13%), Positives = 30/86 (34%), Gaps = 6/86 (6%)

Query: 922  GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNI 981
            G     LG EV  +       G  +   ++      + ++G++      V     S   +
Sbjct: 57   GRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKL 116

Query: 982  TVTIENVKDPTKKEELSCDALLVCVG 1007
             + +++        ++  D ++  VG
Sbjct: 117  LIKLKD------GRKVETDHIVAAVG 136

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 156

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

 Score = 54.9 bits (131), Expect = 3e-09
 Identities = 18/153 (11%), Positives = 35/153 (22%), Gaps = 37/153 (24%)

Query: 892  ATGSE---VTPFPGIEVDEETIVSSTGALSLKK--------------------GSVWGRL 928
              G+      P PG +      ++    +  KK                           
Sbjct: 4    TDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATA 63

Query: 929  GAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIEN- 987
            G EVT +  ++                R L +  ++       +        I     + 
Sbjct: 64   GHEVTIVSGVHLA-NYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGRMEIYNIWGDG 122

Query: 988  ------------VKDPTKKEELSCDALLVCVGR 1008
                            T    +  D+L++  GR
Sbjct: 123  SKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGR 155

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 52.1 bits (124), Expect = 1e-08
 Identities = 27/120 (22%), Positives = 46/120 (38%), Gaps = 20/120 (16%)

Query: 901  PGIEVDEETIVSSTGALSLKK-GSVWGRLGAEVTAIEFMNAIGGMGI------------- 946
            P  +     I+ STGAL+L +       +G     IE   A    G              
Sbjct: 1    PNFKFSN-RILDSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS 59

Query: 947  --DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLV 1004
              + ++A   ++ L K+G++        GA +  D +TVT E      + + +  D +LV
Sbjct: 60   GFEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEA---NGETKTIDADYVLV 116

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 51.3 bits (121), Expect = 8e-08
 Identities = 27/180 (15%), Positives = 45/180 (25%), Gaps = 29/180 (16%)

Query: 915  GALSLKKGSVWGRLGAEVTAIEFMNAIG------------GMGIDGEVAKQFQRILGKQG 962
            G   ++        G E       +A                G     +   +       
Sbjct: 12   GLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAA 71

Query: 963  MQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGI 1022
               +L       + + D   V + +         L  D L++  G RP   N  L     
Sbjct: 72   QNIQLLGGTQVTAINRDRQQVILSD------GRALDYDRLVLATGGRPLIPNCELAS-AA 124

Query: 1023 EKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPM----------LAHKAEDEGIVCVEGIAG 1072
                   + +N   QT  P I A+GDC                   A ++       + G
Sbjct: 125  GLQVDNGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILCG 184

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (118), Expect = 9e-08
 Identities = 17/126 (13%), Positives = 36/126 (28%), Gaps = 23/126 (18%)

Query: 901  PGIEVDEETIVSSTGALSLKK----------------GSVWGRLGAEVTAIEFMNAIGGM 944
            PG        ++S G   L++                 +         T++   +     
Sbjct: 4    PGAS----LGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR 59

Query: 945  GIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKD---PTKKEELSCDA 1001
              D  ++      L   G++    ++V    K+   + V++        P        D 
Sbjct: 60   SFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDC 119

Query: 1002 LLVCVG 1007
            LL  +G
Sbjct: 120  LLWAIG 125

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 116

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 46.7 bits (110), Expect = 7e-07
 Identities = 20/127 (15%), Positives = 41/127 (32%), Gaps = 33/127 (25%)

Query: 901  PGIEVDEETIVSSTGALSL----KKGSVWGRLGAEVTAIEFM---------------NAI 941
            PG+E      + S G  +L    ++ +V G   A    +E                    
Sbjct: 3    PGVEY----GIDSDGFFALPALPERVAVVG---AGYIGVELGGVINGLGAKTHLFEMFDA 55

Query: 942  GGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCD 1000
                 D  +++    ++  +G Q           K+ D  +T+ +E+          + D
Sbjct: 56   PLPSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELED------GRSETVD 109

Query: 1001 ALLVCVG 1007
             L+  +G
Sbjct: 110  CLIWAIG 116

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 49.3 bits (116), Expect = 8e-07
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDM 567
              VEK   LGGTC+NVGC+P K + N +  + +  +   
Sbjct: 27  VALVEK-SRLGGTCVNVGCVPKKIMFNAASVHDILENSRH 65

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 44.7 bits (104), Expect = 3e-05
 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 9/89 (10%)

Query: 991  PTKKEELSCDALLVCVGRRPYTH-----NLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFA 1045
            P  +E L    +L+ VG +P        NL LE++ +E +    V V+   +T + NI+A
Sbjct: 133  PLNEEILEGRNILIAVGNKPVGRSPDTENLKLEKLNVETNNNYIV-VDENQRTSVNNIYA 191

Query: 1046 IGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
            +GDC    M+    E E +  ++    ++
Sbjct: 192  VGDCC---MVKKSKEIEDLNLLKLYNEER 217

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 47.6 bits (111), Expect = 5e-06
 Identities = 21/141 (14%), Positives = 41/141 (29%), Gaps = 18/141 (12%)

Query: 944  MGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALL 1003
              + G+  K   +       + +L   V     S   +TV  E+          S D ++
Sbjct: 206  YYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGGVTVKTED------NSVYSADYVM 259

Query: 1004 VCVGRRPYTHNLGLEEIGIEK------DEKGRVPVN----SRFQTVIPNIFAIGDCIH-- 1051
            V         +L   +  +         +   V VN     + +  +  ++  G+     
Sbjct: 260  VSASLGVLQSDLIQFKPKLPTWKVRAIYQFWPVGVNRYEYDQLRAPVGRVYFTGEHTSEH 319

Query: 1052 GPMLAHKAEDEGIVCVEGIAG 1072
                 H A   GI   E +  
Sbjct: 320  YNGYVHGAYLSGIDSAEILIN 340

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 45.9 bits (107), Expect = 5e-06
 Identities = 20/169 (11%), Positives = 46/169 (27%), Gaps = 13/169 (7%)

Query: 915  GALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQG--MQFKLGTKVT 972
            G  S+   +   + G +       +          ++K F      +   +  K   +V 
Sbjct: 12   GLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVE 71

Query: 973  GASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEI-GIEKDEKGRVP 1031
                          +    +    L    L++  G  P                    + 
Sbjct: 72   WLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGLACDDGIF 131

Query: 1032 VNSRFQTVIPNIFAIGDCIHGPM----------LAHKAEDEGIVCVEGI 1070
            V++  +T  P+++A+GD                    A+++GI     +
Sbjct: 132  VDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHL 180

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 46.8 bits (109), Expect = 8e-06
 Identities = 22/175 (12%), Positives = 49/175 (28%), Gaps = 20/175 (11%)

Query: 915  GALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGK--QGMQFKLGTKVT 972
            GA+  K      +               G        +     + K  +  + +L ++V 
Sbjct: 194  GAIRSKLSPKNEKKQGPPKTSANKKRQRGSFSFLGGMQTLTDAICKDLREDELRLNSRVL 253

Query: 973  GASKSGDNITVTIEN-----VKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEK--- 1024
              S S    +               + EE S DA+++          + + + G      
Sbjct: 254  ELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKS-MKIAKRGNPFLLN 312

Query: 1025 --------DEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIA 1071
                    +    +    + +  +P +F  G+   G  +  KA   G    + + 
Sbjct: 313  FIPEVYGHNYDSVLDAIDKMEKNLPGLFYAGNHRGGLSV-GKALSSGCNAADLVI 366

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 11/108 (10%), Positives = 29/108 (26%), Gaps = 7/108 (6%)

Query: 513 GASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSG------- 565
           G S               +E++ + GG     G + S  ++    +  +   G       
Sbjct: 45  GLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQD 104

Query: 566 DMKARGIEVEGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKALKIIT 613
                          +  ++   +  +         + K N+   ++T
Sbjct: 105 TYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVT 152

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 42.5 bits (99), Expect = 2e-05
 Identities = 19/121 (15%), Positives = 36/121 (29%), Gaps = 24/121 (19%)

Query: 907  EETIVSSTGALSLKK-GSVWGRLGAEVTAIEFMNAIGGMGIDG----------------- 948
            ++  ++S  A  L +       +G    +IEF          G                 
Sbjct: 2    DDLCITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFD 61

Query: 949  -EVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVG 1007
             E+ KQ    L   G+  +        +K+ D     +          E   D +++ +G
Sbjct: 62   SELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVF-----ESGAEADYDVVMLAIG 116

Query: 1008 R 1008
            R
Sbjct: 117  R 117

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 121

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 42.0 bits (98), Expect = 4e-05
 Identities = 17/131 (12%), Positives = 39/131 (29%), Gaps = 30/131 (22%)

Query: 897  VTPFPGIEVDEETIVSSTGALSLKK--------------------GSVWGRLGAEVTAIE 936
            +    G  +   T+ +   A  ++                      +     G  V+ +E
Sbjct: 1    LPTLQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVE 60

Query: 937  FMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEE 996
                +        +A    R    QG+  +    VTG+        V +++         
Sbjct: 61   TQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDG----VVLLDD------GTR 110

Query: 997  LSCDALLVCVG 1007
            ++ D ++V +G
Sbjct: 111  IAADMVVVGIG 121

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 115

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 41.7 bits (97), Expect = 4e-05
 Identities = 24/118 (20%), Positives = 36/118 (30%), Gaps = 22/118 (18%)

Query: 906  DEETIVSSTGALSLKK-GSVWGRLGAEVTAIEFMNAIGGMGIDGEVA------------- 951
                ++SST AL+ K        +G     +E   A   +G    V              
Sbjct: 4    LGGPVISSTEALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSE 63

Query: 952  --KQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVG 1007
                    L K G+   LG  V G     +   +  +       +  L  D +LV VG
Sbjct: 64   LTAPVAESLKKLGIALHLGHSVEGYE---NGCLLANDG---KGGQLRLEADRVLVAVG 115

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 42.5 bits (98), Expect = 9e-05
 Identities = 22/154 (14%), Positives = 38/154 (24%), Gaps = 10/154 (6%)

Query: 930  AEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVK 989
             EVT IE         +  EV    +++   +     L                  + + 
Sbjct: 28   IEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDSATGIDPDKKLV 87

Query: 990  DPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIE-------KDEKGRVPVNSRFQTVIPN 1042
                  E   D  +V  G       +      I              V + +   ++   
Sbjct: 88   KTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQIAGLTNDAGWCPVDIKTFESSIHKG 147

Query: 1043 IFAIGDCIHG---PMLAHKAEDEGIVCVEGIAGD 1073
            I  IGD       P   + A  +G V    +   
Sbjct: 148  IHVIGDASIANPMPKSGYSANSQGKVAAAAVVVL 181

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 1013 HNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPM----LAHKAEDEGIVCVE 1068
            +       GI       + ++  F+T   +++AIGDC          A  A ++  V  +
Sbjct: 105  NVDLARRSGIHTG--RGILIDDNFRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLAD 162

Query: 1069 GIAGD 1073
             + G+
Sbjct: 163  ILKGE 167

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 43.2 bits (100), Expect = 1e-04
 Identities = 22/155 (14%), Positives = 42/155 (27%), Gaps = 14/155 (9%)

Query: 925  WGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVT 984
              R  A         +      DG +      +    G    +G +V G ++      + 
Sbjct: 196  AQRQAALPAGTAPKLSGALSTFDGGLQVLIDALAASLGDAAHVGARVEGLAREDGGWRLI 255

Query: 985  IENVKDPTKKEELSCDALLVCVGRRPYTHNLG---------LEEIGIEKDEKGRVPVNSR 1035
            IE   +  ++ ELS   +++          L          +  I        RV     
Sbjct: 256  IE---EHGRRAELSVAQVVLAAPAHATAKLLRPLDDALAALVAGI-YNLGHLERVAAIDA 311

Query: 1036 FQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGI 1070
                +P +  IG+   G  L            + +
Sbjct: 312  ALQRLPGLHLIGNAYKGVGLND-CIRNAAQLADAL 345

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 29/171 (16%), Positives = 54/171 (31%), Gaps = 30/171 (17%)

Query: 929  GAEVTAIEFMNAI------------GGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASK 976
             AE+   E  + I            G +     V       +  +G+     T++T    
Sbjct: 25   DAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEITAIQP 84

Query: 977  SGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTH-----NLGLEEIGIEKDEKGRVP 1031
                +TV      +   +     D L++  G  P+       N    +  +E    G + 
Sbjct: 85   KEHQVTVKDLVSGEERVEN---YDKLIISPGAVPFELDGVRPNTAWLKGTLELHPNGLIK 141

Query: 1032 VNSRFQTVIPNIFAIGDCIHGP----------MLAHKAEDEGIVCVEGIAG 1072
             +   +T  P++FA+GD                LA  A  +G   V+ +  
Sbjct: 142  TDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEE 192

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 121

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 16/107 (14%), Positives = 36/107 (33%), Gaps = 16/107 (14%)

Query: 916  ALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILG---------------K 960
             L  + GS    +G   TA+E+       G    +  + + +                 +
Sbjct: 16   ELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKE 75

Query: 961  QGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVG 1007
            QGM+   G+ VT   +  +     +  +     +  +  D + + +G
Sbjct: 76   QGMEIISGSNVTRIEEDANGRVQAVVAMTP-NGEMRIETDFVFLGLG 121

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 37.0 bits (85), Expect = 0.002
 Identities = 19/126 (15%), Positives = 43/126 (34%), Gaps = 28/126 (22%)

Query: 899  PFPGIE--VDEETIVSSTGAL-SLKKGSVWGRLGAEVTAIEFMNAIGG------------ 943
               G E  +   TI  +     S++       +G     +E    +              
Sbjct: 6    QIKGKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGA 65

Query: 944  --MGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDA 1001
              +G+D E++   + +L + G++F L +++  A++ G    V        T    +    
Sbjct: 66   MFLGLDEELSNMIKDMLEETGVKFFLNSELLEANEEG----VL-------TNSGFIEGKV 114

Query: 1002 LLVCVG 1007
             +  +G
Sbjct: 115  KICAIG 120

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 28/132 (21%), Positives = 45/132 (34%), Gaps = 21/132 (15%)

Query: 7   MKNGDIDRAIRMFEKAETHQQHVP-------RMLLENTDKLEKYIIQSKDPVLLKWWAQY 59
            + G ID AI  + +A   Q H P         L E     E     +    L    A  
Sbjct: 248 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS 307

Query: 60  IESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSG 119
           + +  ++       EEA            ++ + +A E+       AA  +LA   +  G
Sbjct: 308 LNNLANIKREQGNIEEA------------VRLYRKALEVF--PEFAAAHSNLASVLQQQG 353

Query: 120 QFDEAIHFYSVA 131
           +  EA+  Y  A
Sbjct: 354 KLQEALMHYKEA 365

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1074
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.82
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.82
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	99.8
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	99.76
d1ebda3	115	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.75
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	99.75
d1v59a3	123	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.74
d1ojta3	128	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.74
d1xdia2	118	Dihydrolipoamide dehydrogenase {Mycobacterium tube	99.74
d3lada3	124	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.73
d1dxla3	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.73
d3grsa3	115	Glutathione reductase {Human (Homo sapiens) [TaxId	99.73
d1lvla3	123	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.73
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.72
d1gesa3	115	Glutathione reductase {Escherichia coli [TaxId: 56	99.71
d1mo9a3	140	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.67
d1feca3	128	Trypanothione reductase {Crithidia fasciculata [Ta	99.66
d1onfa3	119	Glutathione reductase {Plasmodium falciparum [TaxI	99.66
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.66
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.65
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.64
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	99.63
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.63
d1h6va3	133	Mammalian thioredoxin reductase {Rat (Rattus norve	99.56
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.52
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.45
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.44
d1nhpa3	126	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.44
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.42
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	99.33
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	99.25
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.23
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.2
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.2
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.18
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.17
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.16
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	99.16
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.11
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.06
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.04
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.03
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.94
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	98.93
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	98.93
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.88
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.87
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.86
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	98.85
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	98.83
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	98.82
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.8
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.8
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.79
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.75
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.75
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	98.74
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.72
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	98.71
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	98.7
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.66
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.66
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.66
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	98.65
d1xdia2	118	Dihydrolipoamide dehydrogenase {Mycobacterium tube	98.64
d1lvla3	123	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.62
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.61
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.6
d1ebda3	115	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.58
d1dxla3	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.57
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.56
d1v59a3	123	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.55
d1ojta3	128	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.54
d3lada3	124	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.53
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	98.49
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.49
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.49
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.48
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	98.45
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.43
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.43
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.42
d3grsa3	115	Glutathione reductase {Human (Homo sapiens) [TaxId	98.42
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.41
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.4
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	98.4
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.35
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	98.34
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.33
d1gesa3	115	Glutathione reductase {Escherichia coli [TaxId: 56	98.32
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.32
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.31
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	98.31
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.27
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.26
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.26
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.23
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	98.22
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.22
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.21
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.21
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.2
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.18
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.16
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.16
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.14
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	98.13
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.12
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.12
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.11
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.07
d1feca3	128	Trypanothione reductase {Crithidia fasciculata [Ta	98.01
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.01
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	97.99
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	97.98
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	97.97
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.96
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	97.94
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	97.91
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	97.91
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	97.91
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.89
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	97.87
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	97.86
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	97.86
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	97.84
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.81
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	97.76
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	97.68
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	97.67
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	97.67
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	97.61
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.61
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	97.6
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	97.56
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.54
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	97.54
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.49
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	97.44
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	97.39
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.38
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	97.37
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.37
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.34
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.33
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	97.29
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	97.27
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.25
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	97.25
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	97.24
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	97.22
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	97.17
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.12
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	97.09
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.06
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	96.99
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	96.9
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	96.89
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	96.87
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	96.72
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	96.7
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.62
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	96.47
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	96.44
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	96.3
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	96.24
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	96.15
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	96.07
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	96.06
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	96.05
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	96.02
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	95.96
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	95.88
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	95.85
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	95.77
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	95.7
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	95.6
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	95.57
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	95.36
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	95.35
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	95.26
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	95.24
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	95.16
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	94.84
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	94.83
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	94.83
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	94.81
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	94.5
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	94.46
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	94.34
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	94.17
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	94.1
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	94.07
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	93.78
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	93.41
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	93.37
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	93.35
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	93.07
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	92.85
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	92.72
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	92.46
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	91.88
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	91.79
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	91.62
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	91.53
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	91.46
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	91.42
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	91.23
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	90.68
d1nhpa3	126	NADH peroxidase {Enterococcus faecalis [TaxId: 135	90.05
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	89.42
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	89.15
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	88.64
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	88.35
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	87.7
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	87.1
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	86.29
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	85.4
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	85.27
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	85.26
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	83.59
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	83.41
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	83.16
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	82.88
d1onfa3	119	Glutathione reductase {Plasmodium falciparum [TaxI	82.79
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	82.48
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	81.27
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	81.02

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.82  E-value=1.8e-20  Score=197.06  Aligned_cols=173  Identities=44%  Similarity=0.666  Sum_probs=137.4

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchh-------------------------------------
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLE-------------------------------------  831 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~-------------------------------------  831 (1074)
                      +.+|+||||||||++||+++++     +++|+.+..|+.....                                     
T Consensus         3 ~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~~   82 (221)
T d1dxla1           3 ENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDLA   82 (221)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeeecchhhhhhhhhHhHHHHHHHhhhhhhcCeecccceecHH
Confidence            3459999999999999999999     7888877776642111                                     


Q ss_pred             hhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCccee
Q psy14927        832 TMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIV  911 (1074)
Q Consensus       832 ~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~  911 (1074)
                      ....++......+...+...+...+|+++.++..+.++.........+....+.+|.||||||++|              
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~a~~VIiATGs~~--------------  148 (221)
T d1dxla1          83 AMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDV--------------  148 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCEEE--------------
T ss_pred             HHHHHHHHHHHHHhhHHHHhhhcCCeEEEEeccccccccccccccccccccccccceEEEeECCCc--------------
Confidence            111111122233344456667778999999988888887777666555557899999999999754              


Q ss_pred             chhhHhcchHhhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCC
Q psy14927        912 SSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDP  991 (1074)
Q Consensus       912 t~~~~~~~~~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~  991 (1074)
                                                                                                      
T Consensus       149 --------------------------------------------------------------------------------  148 (221)
T d1dxla1         149 --------------------------------------------------------------------------------  148 (221)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHhh
Q psy14927        992 TKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus       992 g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                                    .|++|+++.++++.+|+++|++|+|.||++++||+|||||+|||+.+|.+++.|..+|+.||.+|+
T Consensus       149 --------------~gr~p~~~~l~l~~~gv~~~~~G~i~vd~~~~T~v~gi~A~GDv~~g~~l~~~A~~~g~~aa~~i~  214 (221)
T d1dxla1         149 --------------KGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGPMLAHKAEEDGVACVEYLA  214 (221)
T ss_dssp             --------------CCEEECCTTSCCTTTTCCBCSSSCBCCCTTCBCSSTTEEECSTTSSSCCCHHHHHHHHHHHHHHHT
T ss_pred             --------------cCccccCCCCChHhcCceEcCCCcEEeCCCcccCCCCEEEEeccCCCcccHHHHHHHHHHHHHHHc
Confidence                          145688887778899999999999999999999999999999999999999999999999999999


Q ss_pred             CCC
Q psy14927       1072 GDK 1074 (1074)
Q Consensus      1072 ~~~ 1074 (1074)
                      |++
T Consensus       215 g~~  217 (221)
T d1dxla1         215 GKV  217 (221)
T ss_dssp             TSC
T ss_pred             CCC
Confidence            864

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.82  E-value=3.5e-20  Score=194.91  Aligned_cols=174  Identities=39%  Similarity=0.573  Sum_probs=139.2

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhcccccc-----------------------------------ccchhhhh
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGV-----------------------------------KLNLETMM  834 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~-----------------------------------~~~~~~~~  834 (1074)
                      .+||||||||||++||.++++     +++|+....|.                                   .+.+..+.
T Consensus         4 ~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (223)
T d1ebda1           4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAKVQ   83 (223)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEecCCCCcceeccccccccccccccchhhhhhhhhhhcccchhheeeHHHHh
Confidence            359999999999999999999     56665432111                                   12333334


Q ss_pred             hhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcceechh
Q psy14927        835 GTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSST  914 (1074)
Q Consensus       835 ~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t~~  914 (1074)
                      .........+...+...+...+|+++.|++.+.++....+....+ ..++..+.+|||+|..|..               
T Consensus        84 ~~~~~~v~~l~~~~~~~~~~~~V~~i~G~a~f~~~~~~~v~~~~~-~~~~~~~~iiIa~g~~p~~---------------  147 (223)
T d1ebda1          84 EWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDS-AQTYTFKNAIIATGSRPIE---------------  147 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEETTEEEEEETTE-EEEEECSEEEECCCEEECC---------------
T ss_pred             hHHHHHHHHHHhhHHHhhhccceeeeccEEEEccCcccceecccc-ceEEecccEEEEcCCCccc---------------
Confidence            444444455556667777888999999999888888777766554 3679999999999987631               


Q ss_pred             hHhcchHhhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCc
Q psy14927        915 GALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKK  994 (1074)
Q Consensus       915 ~~~~~~~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~  994 (1074)
                                                                                                      
T Consensus       148 --------------------------------------------------------------------------------  147 (223)
T d1ebda1         148 --------------------------------------------------------------------------------  147 (223)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHhhCCC
Q psy14927        995 EELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074 (1074)
Q Consensus       995 ~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I~~~~ 1074 (1074)
                                .+|++||++.++++.+|+++|++|+|.||+++|||+|||||+|||+++|.+++.|..+|+.||.+|+|++
T Consensus       148 ----------~~G~~p~~~~l~l~~~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~~~~~~~~~A~~~g~~aa~~i~g~~  217 (223)
T d1ebda1         148 ----------LVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVPGPALAHKASYEGKVAAEAIAGHP  217 (223)
T ss_dssp             ----------BSCEEESCSSSSTTTTTCCBCTTSCBCCCTTCBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTSCC
T ss_pred             ----------cccceecCCCCChHhcCceECCCCCEeECCCCCCCCCCEEEEeccCCCcccHHHHHHHHHHHHHHHcCCC
Confidence                      1467899998888999999999999999999999999999999999999999999999999999999864

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.80  E-value=9.6e-20  Score=193.20  Aligned_cols=173  Identities=27%  Similarity=0.370  Sum_probs=128.2

Q ss_pred             hhhhhccccchHHHHHHHhh--------hhhhhcccccc--------------------------------------ccc
Q psy14927        796 VVLNTLGNCAAVQANYHLAT--------KLFTQAGDKGV--------------------------------------KLN  829 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~--------~l~e~~~~~g~--------------------------------------~~~  829 (1074)
                      +|+||||||||++||+++++        +++|+.. .||                                      .++
T Consensus         3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~-~GG~cln~GciPsK~ll~~a~~~~~~~~~~~~G~~i~~~~~~~d   81 (233)
T d1xdia1           3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKIS   81 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------CBC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC-CCceeecccccccEEEEeecchhhhhhhhhhcCCcccccCceee
Confidence            48999999999999999876        3566532 222                                      122


Q ss_pred             hhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecC------CeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCC
Q psy14927        830 LETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGP------NTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGI  903 (1074)
Q Consensus       830 ~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~------~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi  903 (1074)
                      |..+..+.......+...+...+...||+++.|+..+++.      ..+.++..+|...++++|.+|||||+.|..+|. 
T Consensus        82 ~~~~~~~~~~v~~~~~~~~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~v~v~~~dg~~~~i~ad~viiAtG~~p~~~~~-  160 (233)
T d1xdia1          82 LPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPS-  160 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCCGG-
T ss_pred             eeeeccccceeeeeeecceehhhcccceeEEECcccccccccccccceEEEEecCCceeeeecceeeeecCcccccccc-
Confidence            3333333333333344446777888999999998887765      346666778877789999999999987643220 


Q ss_pred             CCCCcceechhhHhcchHhhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEE
Q psy14927        904 EVDEETIVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITV  983 (1074)
Q Consensus       904 ~~~~~~v~t~~~~~~~~~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v  983 (1074)
                                                                                                      
T Consensus       161 --------------------------------------------------------------------------------  160 (233)
T d1xdia1         161 --------------------------------------------------------------------------------  160 (233)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcHHHHHHHH
Q psy14927        984 TIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEG 1063 (1074)
Q Consensus       984 ~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~~~A~~~G 1063 (1074)
                                             |..|+.+.++++..|++++++|+|.||++++|++|||||+|||++.+++++.|..+|
T Consensus       161 -----------------------~~~~~~~~l~l~~~gv~~~~~G~I~vd~~~~T~~~gIyA~GDv~~~~~l~~~A~~~g  217 (233)
T d1xdia1         161 -----------------------GSVPNTSGLGLERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCTGLLPLASVAAMQG  217 (233)
T ss_dssp             -----------------------CEEECCSSSCTTTTTCCCBTTTBCCCCSSSBCSSTTEEECSGGGTSCSCHHHHHHHH
T ss_pred             -----------------------cccccccccccchhhhcccCCCcCCcCCCcccCCCCEEEEEEeCCCchhHHHHHHHH
Confidence                                   112222333467788999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCC
Q psy14927       1064 IVCVEGIAGD 1073 (1074)
Q Consensus      1064 ~~aA~~I~~~ 1073 (1074)
                      ++||.||+|+
T Consensus       218 ~~aa~~~~g~  227 (233)
T d1xdia1         218 RIAMYHALGE  227 (233)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHcCC
Confidence            9999999985

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=9.9e-19  Score=183.55  Aligned_cols=171  Identities=23%  Similarity=0.290  Sum_probs=131.3

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccccccc-----------------------------------cchhhhh
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVK-----------------------------------LNLETMM  834 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~-----------------------------------~~~~~~~  834 (1074)
                      .+||||||||+|++||.++++     +++|+....|..                                   +++....
T Consensus         4 yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~~~GG~c~n~g~~~~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (221)
T d3grsa1           4 YDYLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVIK   83 (221)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGTSCCCCCCCCHHHHH
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCEEEEEeccCCCCccccchhhhhhhhhhHHHHHHHHhhhhhccccccccchhhhhhh
Confidence            359999999999999999999     566653322211                                   1222223


Q ss_pred             hhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcceechh
Q psy14927        835 GTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSST  914 (1074)
Q Consensus       835 ~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t~~  914 (1074)
                      .........+.......++..||+++.|+..+......++....   ..+..+.++||||+.|. +|.            
T Consensus        84 ~~~~~~v~~~~~~~~~~~~~~gV~~i~G~a~~~~~~~~~~~~~~---~~~~~~~~~iatG~~p~-vp~------------  147 (221)
T d3grsa1          84 EKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSG---KKYTAPHILIATGGMPS-TPH------------  147 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEEESCCEECSCSSCEEEETT---EEEECSCEEECCCEEEC-CCC------------
T ss_pred             hhhheEEeeeccchhhhhccCceEEEEEeeeeccccceeeeeec---cccccceeEEecCcccc-CCC------------
Confidence            33333334444556677888999999998888777666554443   47899999999999874 231            


Q ss_pred             hHhcchHhhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCc
Q psy14927        915 GALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKK  994 (1074)
Q Consensus       915 ~~~~~~~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~  994 (1074)
                                                                                                      
T Consensus       148 --------------------------------------------------------------------------------  147 (221)
T d3grsa1         148 --------------------------------------------------------------------------------  147 (221)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHhhCC
Q psy14927        995 EELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus       995 ~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                                  |+.||++.|+++..|+++|++|+|.||+++|||+|||||+|||++.+.+++.|..+|+.||++|++.
T Consensus       148 ------------~r~p~~~~l~L~~~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~~~~~l~~~A~~~G~~aa~~~~~~  214 (221)
T d3grsa1         148 ------------ERVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFEY  214 (221)
T ss_dssp             ------------TEEESCTTTTGGGTTCCBCTTSCBCCCTTCBCSSTTEEECGGGGTSSCCHHHHHHHHHHHHHHHHSC
T ss_pred             ------------ccccCCCCcCchhcCcEECCCccEEeCCCccccCCcEEEEEEccCCcCcHHHHHHHHHHHHHHHcCC
Confidence                        1346677777889999999999999999999999999999999999889999999999999999974

>d1ebda3 d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.75  E-value=6.1e-19  Score=163.73  Aligned_cols=107  Identities=39%  Similarity=0.535  Sum_probs=103.0

Q ss_pred             cccccccccCCcceEEEEeccCCCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCC
Q psy14927        418 ANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGP  497 (1074)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~  497 (1074)
                      |+|++++.+|+.+.|+++++.         +++.|+++.+.++++..++|++..++++||+|++++++|++|||+|++|+
T Consensus         1 AvP~~vft~PeiA~VGlte~e---------a~~~g~~~~v~~~~~~~~~ra~~~~~~~G~vKli~~~~~~~iLG~~ivg~   71 (115)
T d1ebda3           1 AIPAVVFSDPECASVGYFEQQ---------AKDEGIDVIAAKFPFAANGRALALNDTDGFLKLVVRKEDGVIIGAQIIGP   71 (115)
T ss_dssp             CCCEEECSSSCEEEEECCHHH---------HHTTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEEST
T ss_pred             CcCeEecCCCceEEEeCCHHH---------HhhhhhhhhccceecccceeeeecCCCcEEEEEEEeCCcceEEEEEEEcC
Confidence            689999999999999999887         88899999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHHcCCCHHHHhhhcccCCcccccc
Q psy14927        498 AAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEK  533 (1074)
Q Consensus       498 ~a~eli~~~a~a~~~~~~~~~l~~~~~~hPt~s~e~  533 (1074)
                      +|+|+|+.++++|+.+.|+.+|.+++|+|||++|.+
T Consensus        72 ~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~  107 (115)
T d1ebda3          72 NASDMIAELGLAIEAGMTAEDIALTIHAHPTLGEIA  107 (115)
T ss_dssp             THHHHHHHHHHHHHHTCBHHHHHHSCCCTTSSTHHH
T ss_pred             CHHHHHHHHHHHHHcCCCHHHHhhCCCCCCCHHHHH
Confidence            999999999999999999999999999999999754

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=2.8e-18  Score=181.93  Aligned_cols=173  Identities=26%  Similarity=0.387  Sum_probs=131.2

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhcccc--------cc------------------------------------
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDK--------GV------------------------------------  826 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~--------g~------------------------------------  826 (1074)
                      +|+||||||||++||+++++     .++|+.+..        |+                                    
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~~~~~~~GG~c~~~g~~~~k~l~~~~~~~~~~~~~~~~gi~~~~~   84 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWKLEDT   84 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTTTTBCCCSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccccccccccccccchhhhhhhhhhhhHhhhhhccccccccc
Confidence            49999999999999999999     677754321        11                                    


Q ss_pred             -ccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCC
Q psy14927        827 -KLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEV  905 (1074)
Q Consensus       827 -~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~  905 (1074)
                       ..++..+..........+...+...++..+|+++.|+..+.+++...+....+....+.++.++++||++|..++ +  
T Consensus        85 ~~~d~~~~~~~~~~~i~~l~~g~~~~l~~~~V~vi~G~~~~~~~~~~~v~~~~~~~~~i~a~~ivi~~G~~p~~~~-i--  161 (235)
T d1h6va1          85 VKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYGKFIGPHKIMATNNKGKEKVYSAERFLIATGERPRYLG-I--  161 (235)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCEEEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECCCS-S--
T ss_pred             eeechhhhhheeeeeeeeccchhhhhhhccCceEEEeEEeeccccceecccccccccccccccceeecCCCceeEE-E--
Confidence             123444444444444555555677788889999999999999999999888887778999999999999985332 1  


Q ss_pred             CCcceechhhHhcchHhhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEE
Q psy14927        906 DEETIVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTI  985 (1074)
Q Consensus       906 ~~~~v~t~~~~~~~~~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~  985 (1074)
                                                                                                    ..
T Consensus       162 ------------------------------------------------------------------------------~~  163 (235)
T d1h6va1         162 ------------------------------------------------------------------------------RD  163 (235)
T ss_dssp             ------------------------------------------------------------------------------EE
T ss_pred             ------------------------------------------------------------------------------ee
Confidence                                                                                          00


Q ss_pred             eeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCC-CCCeeeCCCCCCCCCCEEEecccCCC-CCcHHHHHHHH
Q psy14927        986 ENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDE-KGRVPVNSRFQTVIPNIFAIGDCIHG-PMLAHKAEDEG 1063 (1074)
Q Consensus       986 ~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~-~G~I~Vd~~~~ts~~~IyAiGD~~~~-~~~~~~A~~~G 1063 (1074)
                      .+                        +..+.+...|++++. .|+|.||+++|||+|||||+|||+++ +.+++.|+.+|
T Consensus       164 ~~------------------------~~~~~l~~~gv~l~~~~g~I~vd~~~~TsvpgIyA~GDv~~g~~~l~~~A~~eG  219 (235)
T d1h6va1         164 SC------------------------TRTIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEGKLELTPVAIQAG  219 (235)
T ss_dssp             ES------------------------CTTSCCTTTTCCCCSSSCCBCCCTTSBCSSTTEEECGGGBTTSCCCHHHHHHHH
T ss_pred             cc------------------------ceeeccccceeeeccccCccccCCccccCCCCEEEEEeccCCCcccHHHHHHHH
Confidence            00                        001113455677775 59999999999999999999999865 56899999999


Q ss_pred             HHHHHHhhCC
Q psy14927       1064 IVCVEGIAGD 1073 (1074)
Q Consensus      1064 ~~aA~~I~~~ 1073 (1074)
                      ++||.+|+|.
T Consensus       220 ~~aa~~~~g~  229 (235)
T d1h6va1         220 RLLAQRLYGG  229 (235)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHcCC
Confidence            9999999974

>d1v59a3 d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=8.8e-19  Score=164.71  Aligned_cols=109  Identities=54%  Similarity=0.861  Sum_probs=104.4

Q ss_pred             cccccccccccCCcceEEEEeccCCCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEe
Q psy14927        416 FAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHII  495 (1074)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~ii  495 (1074)
                      |..+|++++.+|+.+.|++++++         +++.|.++.+.++++..++|+...+++.||+|+++|+++|+|||+|++
T Consensus         1 Y~~iP~~vft~PeiA~VGlte~e---------A~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~d~~~~~ilGa~iv   71 (123)
T d1v59a3           1 YNNIPSVMYSHPEVAWVGKTEEQ---------LKEAGIDYKIGKFPFAANSRAKTNQDTEGFVKILIDSKTERILGAHII   71 (123)
T ss_dssp             TTSCCEEECSSSEEEEEECCHHH---------HHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEE
T ss_pred             CCCCCEEeecCCccEEEECCHHH---------HHhcccCceEEEEecccccchhccCCCcEEEEEEEECCCCEEEEEEEE
Confidence            45789999999999999999888         888999999999999999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHcCCCHHHHhhhcccCCcccccc
Q psy14927        496 GPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEK  533 (1074)
Q Consensus       496 G~~a~eli~~~a~a~~~~~~~~~l~~~~~~hPt~s~e~  533 (1074)
                      |++|+|+|+.+++|++++.|+.+|.+++++|||++|.+
T Consensus        72 G~~A~elI~~~alai~~~~t~~~l~~~i~~hPT~sE~~  109 (123)
T d1v59a3          72 GPNAGEMIAEAGLALEYGASAEDVARVCHAHPTLSEAF  109 (123)
T ss_dssp             ETTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCTTHHH
T ss_pred             chHHHHHHHHHHHHHHcCCcHHHHHhcccCCCcHHHHH
Confidence            99999999999999999999999999999999999775

>d1ojta3 d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.74  E-value=1.3e-18  Score=164.46  Aligned_cols=108  Identities=27%  Similarity=0.413  Sum_probs=103.8

Q ss_pred             ccccccccccCCcceEEEEeccCCCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeC
Q psy14927        417 AANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIG  496 (1074)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG  496 (1074)
                      .++|++++.+|+.+.|+++.+.         ++++|+++.+.++++..++|++..+++.||+|+++|++||+|||+|++|
T Consensus         2 r~IP~~vft~PeiA~VGlte~~---------A~~~g~~~~v~~~~~~~~~ra~~~~~~~g~~Kli~d~~~g~iLGa~ivG   72 (128)
T d1ojta3           2 RVIPGVAYTSPEVAWVGETELS---------AKASARKITKANFPWAASGRAIANGCDKPFTKLIFDAETGRIIGGGIVG   72 (128)
T ss_dssp             CCCCEEECSSSCEEEEECCHHH---------HHHHTCCEEEEEEEGGGCHHHHHTTCCSCEEEEEEETTTCBEEEEEEES
T ss_pred             CcCCEeecCCCceeeeeccHHH---------HHHcCCCcccceeeccchhhHHhcCCccceEEEEEeCCCCeEEEEEEEh
Confidence            3689999999999999999988         8888999999999999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHcCCCHHHHhhhcccCCcccccc
Q psy14927        497 PAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEK  533 (1074)
Q Consensus       497 ~~a~eli~~~a~a~~~~~~~~~l~~~~~~hPt~s~e~  533 (1074)
                      ++|+|+|+.+++|++++.|+++|.+++|+|||++|.+
T Consensus        73 ~~A~ElI~~~~lai~~~~t~~~l~~~i~~hPT~sE~l  109 (128)
T d1ojta3          73 PNGGDMIGEVCLAIEMGCDAADIGKTIHPHPTLGESI  109 (128)
T ss_dssp             TTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSSSTTHH
T ss_pred             hhHHHHHHHHHHHHHcCCCHHHHhhCcCcCCCHHHHH
Confidence            9999999999999999999999999999999999765

>d1xdia2 d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.74  E-value=1.1e-18  Score=162.61  Aligned_cols=108  Identities=22%  Similarity=0.272  Sum_probs=103.1

Q ss_pred             ccccccccccCCcceEEEEeccCCCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeC
Q psy14927        417 AANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIG  496 (1074)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG  496 (1074)
                      ..+|++++.+|+.+.|+++++.         +++.|+++.+.+++|..++|++..++++||+|+++|++||+|||+|++|
T Consensus         2 r~iP~~vft~PeiA~vGlte~~---------a~~~g~~~~~~~~~~~~~~ra~~~~~~~G~vKlv~d~~~~~ilGa~ivG   72 (118)
T d1xdia2           2 RTVAATVFTRPEIAAVGVPQSV---------IDAGSVAARTIMLPLRTNARAKMSEMRHGFVKIFCRRSTGVVIGGVVVA   72 (118)
T ss_dssp             GGCEEEECSSSEEEEEESCHHH---------HHHTSSCEEEEEEESTTSHHHHHTTCSSCEEEEEEETTTCBEEEEEEEE
T ss_pred             CCCCEEecCCChheeehhhHHH---------HHhCcccceeeeecccchhhhhhcccchhheEEEEecCCCceEEEEEEc
Confidence            4588999999999999998887         8889999999999999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHcCCCHHHHhhhcccCCcccccc
Q psy14927        497 PAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEK  533 (1074)
Q Consensus       497 ~~a~eli~~~a~a~~~~~~~~~l~~~~~~hPt~s~e~  533 (1074)
                      ++|+|+|+.+++|++.+.|+++|.+++|+|||+++.+
T Consensus        73 ~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l  109 (118)
T d1xdia2          73 PIASELILPIAVAVQNRITVNELAQTLAVYPSLSGSI  109 (118)
T ss_dssp             TTHHHHHHHHHHHHHHTCBHHHHHTSBCCSSSTHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCCHHHHhhCCCCCCCHHHHH
Confidence            9999999999999999999999999999999999765

>d3lada3 d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.73  E-value=1.2e-18  Score=164.12  Aligned_cols=109  Identities=39%  Similarity=0.623  Sum_probs=104.3

Q ss_pred             cccccccccccCCcceEEEEeccCCCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEe
Q psy14927        416 FAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHII  495 (1074)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~ii  495 (1074)
                      |..+|++++.+|+.+.|+++++.         +++.|+++.+..+++..++|+...+++.||+|+++|++||+|||+|++
T Consensus         1 Y~~vP~~vft~PeiA~VGlte~~---------a~~~g~~~~~~~~~~~~~~ra~~~~~~~G~vKlv~d~~t~~ILGa~iv   71 (124)
T d3lada3           1 YDLIPAVIYTHPEIAGVGKTEQA---------LKAEGVAINVGVFPFAASGRAMAANDTAGFVKVIADAKTDRVLGVHVI   71 (124)
T ss_dssp             TTCCCEEECSSSEEEEEECCHHH---------HHHTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTCBEEEEEEE
T ss_pred             CCcCCeEecCcCceeEeehhHHH---------HhhcccccEEEEEECccCcchhhcCCCCeEEEEEEECCCCEEEEEEEE
Confidence            46789999999999999999887         888999999999999999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHcCCCHHHHhhhcccCCcccccc
Q psy14927        496 GPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEK  533 (1074)
Q Consensus       496 G~~a~eli~~~a~a~~~~~~~~~l~~~~~~hPt~s~e~  533 (1074)
                      |++|+|+|+.+++++++|+|+++|.+++|+|||++|.+
T Consensus        72 g~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l  109 (124)
T d3lada3          72 GPSAAELVQQGAIAMEFGTSAEDLGMMVFAHPALSEAL  109 (124)
T ss_dssp             ETTHHHHHHHHHHHHHHTCBHHHHHTSCCCSSCSHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCCHHHHHhCCccCCCHHHHH
Confidence            99999999999999999999999999999999999765

>d1dxla3 d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.73  E-value=1.5e-18  Score=163.16  Aligned_cols=109  Identities=47%  Similarity=0.784  Sum_probs=103.9

Q ss_pred             cccccccccccCCcceEEEEeccCCCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEe
Q psy14927        416 FAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHII  495 (1074)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~ii  495 (1074)
                      +..+|.+++.+|+.+.|+++++.         +++.|+++.+.++++..++|++..++++||+|+++|+++|+|||+|++
T Consensus         1 Y~~iP~~vft~PeiA~vGlte~~---------A~~~g~~~~~~~~~~~~~~ra~~~~~~~G~~Klv~d~~~~~ilG~~iv   71 (123)
T d1dxla3           1 YDKVPGVVYTNPEVASVGKTEEQ---------VKETGVEYRVGKFPFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIM   71 (123)
T ss_dssp             TTSCCEEECSSSEEEEEECCHHH---------HHHTTCCEEEEEEEGGGCHHHHHHSCCCCEEEEEEETTTCBEEEEEEE
T ss_pred             CCCCCEEeecCCceEEEECCHHH---------HHHcCCCEEEEEEeccccchhhhcCCCcceEEEEEECCCCEEEEEEEe
Confidence            45789999999999999999887         888999999999999999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHcCCCHHHHhhhcccCCcccccc
Q psy14927        496 GPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEK  533 (1074)
Q Consensus       496 G~~a~eli~~~a~a~~~~~~~~~l~~~~~~hPt~s~e~  533 (1074)
                      |++|+|+|+.+++|++++.|+++|.+++++|||+++.+
T Consensus        72 G~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~  109 (123)
T d1dxla3          72 APNAGELIHEAAIALQYDASSEDIARVCHAHPTMSEAI  109 (123)
T ss_dssp             ETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCTTHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCcHHHHhhCCCCCCCHHHHH
Confidence            99999999999999999999999999999999999765

>d3grsa3 d.87.1.1 (A:364-478) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.5e-18  Score=159.58  Aligned_cols=110  Identities=23%  Similarity=0.264  Sum_probs=102.3

Q ss_pred             cccccccccccCCcceEEEEeccCCCcccccccccC--CCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEE
Q psy14927        416 FAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGP--GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVH  493 (1074)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~--g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~  493 (1074)
                      +..+|++++.+|+.+.|++++++         ++++  +.++++..++|..++|+...++++||+|+++++++++|||+|
T Consensus         1 Y~~vP~~vft~PeiA~VGltE~e---------A~~~~~~~~v~~~~~~~~~~~~a~~~~~~~g~~k~i~~~~~~~ilG~~   71 (115)
T d3grsa3           1 YNNIPTVVFSHPPIGTVGLTEDE---------AIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIH   71 (115)
T ss_dssp             CTTCCEEECCSSCEEEEECCHHH---------HHHHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEE
T ss_pred             CCCCCEEecCcCccEEEecCcHH---------HHHHhCCcccceeEeeeeecchhhcccccceeEEEEEecCCceEEEEE
Confidence            35689999999999999999877         6554  467999999999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHcCCCHHHHhhhcccCCccccccc
Q psy14927        494 IIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEKN  534 (1074)
Q Consensus       494 iiG~~a~eli~~~a~a~~~~~~~~~l~~~~~~hPt~s~e~~  534 (1074)
                      ++|++|+|+|+.+++|++++.|+++|.+++|+|||++|.+.
T Consensus        72 ivG~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~  112 (115)
T d3grsa3          72 MQGLGCDEMLQGFAVAVKMGATKADFDNTVAIHPTSSEELV  112 (115)
T ss_dssp             EESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGG
T ss_pred             EeccCHHHHHHHHHHHHHcCCCHHHHhhCccCCCCHHHHHH
Confidence            99999999999999999999999999999999999998873

>d1lvla3 d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.73  E-value=1.6e-18  Score=162.76  Aligned_cols=107  Identities=33%  Similarity=0.432  Sum_probs=102.9

Q ss_pred             cccccccccCCcceEEEEeccCCCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCC
Q psy14927        418 ANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGP  497 (1074)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~  497 (1074)
                      ++|++++.+|+.+.|+++++.         +++.|+++++.+++|..++|++..+++.||+|+++|++||+|||+|++|+
T Consensus         3 ~iP~vvft~PeiA~VGlte~e---------A~~~g~~~~v~~~~~~~~~ra~~~~~~~g~vklv~d~~t~~ILG~~ivG~   73 (123)
T d1lvla3           3 AIAAVCFTDPEVVVVGKTPEQ---------ASQQGLDCIVAQFPFAANGRAMSLESKSGFVRVVARRDNHLILGWQAVGV   73 (123)
T ss_dssp             CCCEEECSSSEEEEEECCHHH---------HHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEET
T ss_pred             CCCEEEeCCCccEEEECCHHH---------HhhcchhhhcceeeccccccceecCcchhheeeeeecccccceEEEEEeC
Confidence            688999999999999999877         88899999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHHcCCCHHHHhhhcccCCcccccc
Q psy14927        498 AAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEK  533 (1074)
Q Consensus       498 ~a~eli~~~a~a~~~~~~~~~l~~~~~~hPt~s~e~  533 (1074)
                      +|+|+|+.+++|+++|.|+++|.+++|+|||++|.+
T Consensus        74 ~A~elI~~~~lai~~~~t~~~l~~~i~~hPT~sE~~  109 (123)
T d1lvla3          74 AVSELSTAFAQSLEMGACLEDVAGTIHAHPTLGEAV  109 (123)
T ss_dssp             TGGGHHHHHHHHHHHTCBHHHHHTSCCCTTCTTHHH
T ss_pred             chhhHHHHHHHHHHcCCCHHHHhcCCCCCCCHHHHH
Confidence            999999999999999999999999999999999765

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.72  E-value=9.6e-18  Score=176.44  Aligned_cols=175  Identities=37%  Similarity=0.550  Sum_probs=131.0

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccc-----------------------------------------
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVK-----------------------------------------  827 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~-----------------------------------------  827 (1074)
                      |.+|+||||||||++||++++|     .++|+....++.                                         
T Consensus         3 kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~~~~~gg~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~   82 (229)
T d3lada1           3 KFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTGE   82 (229)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECSC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCccccccccccccccchhhhhhhhhhhhhhhhhhhhhcccccCc
Confidence            5569999999999999999999     566653322111                                         


Q ss_pred             --cchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCC
Q psy14927        828 --LNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEV  905 (1074)
Q Consensus       828 --~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~  905 (1074)
                        +++.....+.......+...+...+...||+++.|+....+.....+....+....+.++.+|+|||+.|...|..  
T Consensus        83 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atG~~~~~~~~~--  160 (229)
T d3lada1          83 VAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEIPRR--  160 (229)
T ss_dssp             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECSTTCEEEECTTSCEEEECCSCEEECCCEEECCCTEE--
T ss_pred             ceeecchhhhhhhHHHHHhhhhHHHHhhcCCeEEEEeEEcccccceeeccccCccceeeecccccccCCccccccccc--
Confidence              1222233333333344445566777788999999988888887777777777667899999999999987433210  


Q ss_pred             CCcceechhhHhcchHhhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEE
Q psy14927        906 DEETIVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTI  985 (1074)
Q Consensus       906 ~~~~v~t~~~~~~~~~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~  985 (1074)
                                                                                                      
T Consensus       161 --------------------------------------------------------------------------------  160 (229)
T d3lada1         161 --------------------------------------------------------------------------------  160 (229)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHH
Q psy14927        986 ENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIV 1065 (1074)
Q Consensus       986 ~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~~~A~~~G~~ 1065 (1074)
                      ..   +.       |              +.+...|+++|++|+|.||++++|++|||||+|||+.+|.+++.|..+|..
T Consensus       161 ~~---~~-------~--------------~~~~~~gv~l~~~G~i~vd~~~~T~vpgiyA~GDv~~g~~l~~~A~~~G~~  216 (229)
T d3lada1         161 PV---TT-------D--------------LLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGAMLAHKASEEGVV  216 (229)
T ss_dssp             EC---CT-------T--------------CCSSCCSCCBCTTSCBCCCTTSBCSSTTEEECGGGSSSCCCHHHHHHHHHH
T ss_pred             cc---cc-------c--------------cchHhcCeeecCCCcEEecccccCCCCCEEEEeCCcchHHHHHHHHHHHHH
Confidence            00   00       0              114566788899999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCC
Q psy14927       1066 CVEGIAGDK 1074 (1074)
Q Consensus      1066 aA~~I~~~~ 1074 (1074)
                      ||.+|+|++
T Consensus       217 aa~~i~g~~  225 (229)
T d3lada1         217 VAERIAGHK  225 (229)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHcCCC
Confidence            999999864

>d1gesa3 d.87.1.1 (A:336-450) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=4.4e-18  Score=157.87  Aligned_cols=110  Identities=23%  Similarity=0.233  Sum_probs=102.5

Q ss_pred             cccccccccccCCcceEEEEeccCCCcccccccccC--CCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEE
Q psy14927        416 FAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGP--GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVH  493 (1074)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~--g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~  493 (1074)
                      +..+|++++.+|+.+.|+++++.         ++++  +.++.+.+++|..++|+...+.++||+|+++++++++|||+|
T Consensus         1 Y~~vP~~vft~PeiA~VGlte~e---------A~~~~~~~~v~~~~~~~~~~~~a~~~~~~~g~~k~v~~~~~~~IlGa~   71 (115)
T d1gesa3           1 YSNIPTVVFSHPPIGTVGLTEPQ---------AREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIH   71 (115)
T ss_dssp             CSSCCEEECCSSCEEEEECCHHH---------HHHHHCGGGEEEEEEEEECHHHHTSSSCCEEEEEEEEETTTTEEEEEE
T ss_pred             CCCCCeEecCCCccEEEeCCHHH---------HHHHcCCcccceeeeecccccccceeccccceEEEEEecCCcEEEEEE
Confidence            45789999999999999999877         6665  456889999999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHcCCCHHHHhhhcccCCccccccc
Q psy14927        494 IIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEKN  534 (1074)
Q Consensus       494 iiG~~a~eli~~~a~a~~~~~~~~~l~~~~~~hPt~s~e~~  534 (1074)
                      ++|++|+|+|+.+++|++++.|+++|.+++|+|||++|.+.
T Consensus        72 ivG~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~  112 (115)
T d1gesa3          72 GIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAEEFV  112 (115)
T ss_dssp             EESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGG
T ss_pred             EECCCHHHHHHHHHHHHHcCCcHHHHhcCcccCCcHHHHHH
Confidence            99999999999999999999999999999999999998863

>d1mo9a3 d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.67  E-value=2e-17  Score=159.49  Aligned_cols=115  Identities=17%  Similarity=0.176  Sum_probs=94.8

Q ss_pred             eccchhhccHHHH-hccccccccccccccccccccccCCcceEEEEeccCCCcccccccccCCCcEEEEeeccCccchhh
Q psy14927        391 PVEKWTLLSLARV-LEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPGIEYKVGKFPFAANSRAK  469 (1074)
Q Consensus       391 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~  469 (1074)
                      |.+|+|||||++| ++|++++++.+|+....+....-.                              ....+..++++.
T Consensus        12 PeiA~VGlTe~eA~~~g~~~~v~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~   61 (140)
T d1mo9a3          12 YEVSFLGMGEEEARAAGHEIVTIKMPPDTENGLNVALP------------------------------ASDRTMLYAFGK   61 (140)
T ss_dssp             SEEEEEECCHHHHHHTTCCEEEEEESCCSTTTTCSSCS------------------------------CCTTTHHHHHST
T ss_pred             CccEEEECCHHHHHHcCCCeEEEEEeecccccceeeee------------------------------eccchhhhhhhh
Confidence            8889999999999 889999999888766543321100                              011233456677


Q ss_pred             hcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHHhhh--cccCCcccccccc
Q psy14927        470 TNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVART--CHAHPTVCVEKND  535 (1074)
Q Consensus       470 ~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l~~~--~~~hPt~s~e~~~  535 (1074)
                      ..+++.||+|+++|++||+|||+|++|++|+|+|+.+++||+++.|+++|.++  +|+|||.++++..
T Consensus        62 ~~~~~~G~vKlv~d~~t~~IlGa~ivG~~A~ElI~~~~~ai~~~~t~~dl~~~~~i~~hPT~~~~l~~  129 (140)
T d1mo9a3          62 GTAHMSGFQKIVIDAKTRKVLGAHHVGYGAKDAFQYLNVLIKQGLTVDELGDMDELFLNPTHFIQLSR  129 (140)
T ss_dssp             TTGGGGCEEEEEEETTTCBEEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSCCHHHHHH
T ss_pred             hcCCCCceEEEEEecCCCcEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHHhcCCCCCCCChHHHHHH
Confidence            88999999999999999999999999999999999999999999999999986  7899999987643

>d1feca3 d.87.1.1 (A:358-485) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.66  E-value=5e-17  Score=153.44  Aligned_cols=110  Identities=19%  Similarity=0.234  Sum_probs=101.3

Q ss_pred             cccccccccccCCcceEEEEeccCCCcccccccccCCCcEEEEeeccCccchhhhcCCC-cceEEEEEECCCCcEEEEEE
Q psy14927        416 FAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDT-DGFVKVLGDKLTDKVLGVHI  494 (1074)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~-~G~~Kli~~~~~~~ilG~~i  494 (1074)
                      +..+|.+++.+|+.+.|+++++.         ++++|.++++.+.+|..++++...... .|++|++++++||+|||+|+
T Consensus         1 y~~VP~aVfT~PeiA~VGlte~e---------A~~~g~~~~v~~~~~~~~~~a~~~~~~~~~~~klv~~~~~g~iLGa~i   71 (128)
T d1feca3           1 HTKVACAVFSIPPMGVCGYVEED---------AAKKYDQVAVYESSFTPLMHNISGSTYKKFMVRIVTNHADGEVLGVHM   71 (128)
T ss_dssp             CSSCCEEECCSSCEEEEECCHHH---------HHHHCSEEEEEEEEECCHHHHHHSCTTCCEEEEEEEETTTTEEEEEEE
T ss_pred             CCCCCEEecCCCcceEEECCHHH---------HhhhhcCcceeecccchHHHHHhccccccceEEEeecCCCCceeEEEE
Confidence            35789999999999999999877         888899999999999999999876654 46889999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHcCCCHHHHhhhcccCCccccccc
Q psy14927        495 IGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEKN  534 (1074)
Q Consensus       495 iG~~a~eli~~~a~a~~~~~~~~~l~~~~~~hPt~s~e~~  534 (1074)
                      +|++|+|+|+.+++||+.|.|+++|.+++|+|||++|.+.
T Consensus        72 vG~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~  111 (128)
T d1feca3          72 LGDSSPEIIQSVAICLKMGAKISDFYNTIGVHPTSAEELC  111 (128)
T ss_dssp             ESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGG
T ss_pred             ECCCHHHHHHHHHHHHHcCCcHHHHhcCcCCCCcHHHHHH
Confidence            9999999999999999999999999999999999998873

>d1onfa3 d.87.1.1 (A:377-495) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.66  E-value=7.1e-17  Score=150.79  Aligned_cols=70  Identities=23%  Similarity=0.327  Sum_probs=64.7

Q ss_pred             ccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHHhhhcccCCcccccc
Q psy14927        464 ANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEK  533 (1074)
Q Consensus       464 ~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l~~~~~~hPt~s~e~  533 (1074)
                      +..++...+..+||+|+++++++++|||+|++|++|+|+|+.+++|+++|.|+++|.+++|+|||++|.+
T Consensus        46 ~~~~~~~~~~~~g~~kli~~~~~~~IlGa~ivG~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~  115 (119)
T d1onfa3          46 SVYDIEPELKEKTYLKLVCVGKDELIKGLHIIGLNADEIVQGFAVALKMNATKKDFDETIPIHPTAAEEF  115 (119)
T ss_dssp             TTSCSCGGGSCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSTTHH
T ss_pred             chhhhhhccCCCceEEEEEecCCCcEEEEEEeCCCHHHHHHHHHHHHHcCCcHHHHhhCcccCCCHHHHH
Confidence            3445666677889999999999999999999999999999999999999999999999999999999876

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.66  E-value=1.4e-16  Score=171.52  Aligned_cols=55  Identities=40%  Similarity=0.718  Sum_probs=51.6

Q ss_pred             cCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHhhCCC
Q psy14927       1020 IGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074 (1074)
Q Consensus      1020 ~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I~~~~ 1074 (1074)
                      .|+++|++|+|.||+++|||+|||||+|||+++|.+++.|..+|++||.||+|++
T Consensus       203 ~Gl~~~~~G~I~Vn~~~~Ts~~~IyA~GDv~~~~~l~~~A~~~G~~aa~~i~G~k  257 (261)
T d1mo9a1         203 LGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGPMEMFKARKSGCYAARNVMGEK  257 (261)
T ss_dssp             HTCCBCTTSCBCCCTTSBCSSTTEEECGGGGCSSCSHHHHHHHHHHHHHHHTTCC
T ss_pred             eeeeeccCCEEEeCCCcccCCCCEEEEEEeCCCcccHHHHHHHHHHHHHHHCCCC
Confidence            4677888999999999999999999999999999999999999999999999975

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.65  E-value=5.4e-16  Score=163.41  Aligned_cols=80  Identities=35%  Similarity=0.623  Sum_probs=68.6

Q ss_pred             eEEEcCEEEEccC-CcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHhhCC
Q psy14927        995 EELSCDALLVCVG-RRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus       995 ~~i~~D~vi~a~G-~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      ....+|.++++.| +.|++....++..|+++|++|+|.||+++|||+|||||+|||+++|.+++.|+.+|++||.+|+|+
T Consensus       145 ~~~~~~~~~l~~~~~~~~~~~~~~e~~g~~~d~~G~I~vd~~~~TsvpgVyAaGDv~~~~~l~~~A~~eG~~Aa~~i~G~  224 (229)
T d1ojta1         145 KIVAFKNCIIAAGSRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPMLAHKAVHEGHVAAENCAGH  224 (229)
T ss_dssp             EEEEEEEEEECCCEEEECGGGTTGGGTTCCCCTTSCCCCCTTSBCSSTTEEECGGGTCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred             cceecceEEEEecccCCcccccchhhhCccCCCCCCEEcCCCccCCCCCEEEEEecCCCcchHHHHHHHHHHHHHHHcCC
Confidence            3455555665555 557666656889999999999999999999999999999999999999999999999999999986


Q ss_pred             C
Q psy14927       1074 K 1074 (1074)
Q Consensus      1074 ~ 1074 (1074)
                      +
T Consensus       225 ~  225 (229)
T d1ojta1         225 K  225 (229)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.64  E-value=4.6e-16  Score=162.86  Aligned_cols=168  Identities=29%  Similarity=0.436  Sum_probs=118.6

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccc---------------------------------------cc
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVK---------------------------------------LN  829 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~---------------------------------------~~  829 (1074)
                      +.+||||||||+|++||..+++     +++|+.. .||.                                       ..
T Consensus         5 ~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~-~GG~c~~~gc~p~k~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   83 (220)
T d1lvla1           5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA-LGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRLD   83 (220)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCCC
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC-CCCcccccccccchhhhhhHHHHhhhhhccccccceEEeccceeh
Confidence            4569999999999999999999     6666542 2221                                       11


Q ss_pred             hhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcc
Q psy14927        830 LETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEET  909 (1074)
Q Consensus       830 ~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~  909 (1074)
                      +.....................+...+++++.|+..+++......   ++  .++.+|.+|||||++|..+|..+.    
T Consensus        84 ~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~~~~~~~~~~~~---~~--~~i~a~~viiAtG~~p~~lp~~~~----  154 (220)
T d1lvla1          84 IGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEV---DG--QRIQCEHLLLATGSSSVELPRRPR----  154 (220)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEETTEEEE---TT--EEEECSEEEECCCEEECCBTEEEC----
T ss_pred             HHHHhhhheeEEeeeccchhhhhccCceEEEEeeecccCcccccc---cc--eeEeeceeeEcCCCCccccccccc----
Confidence            222222223333333444567777889999999988888775543   33  689999999999999865541100    


Q ss_pred             eechhhHhcchHhhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeecc
Q psy14927        910 IVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVK  989 (1074)
Q Consensus       910 v~t~~~~~~~~~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~  989 (1074)
                                                                                                      
T Consensus       155 --------------------------------------------------------------------------------  154 (220)
T d1lvla1         155 --------------------------------------------------------------------------------  154 (220)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHH
Q psy14927        990 DPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEG 1069 (1074)
Q Consensus       990 ~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~ 1069 (1074)
                                            .....+...+++++ +|+|.||+++||++|||||+|||+..|.+++.|..+|+.||.+
T Consensus       155 ----------------------~~~~~~~~~~~~~~-~g~i~vd~~~~T~~~~I~A~GDv~~~~~l~~~a~~~g~~~a~~  211 (220)
T d1lvla1         155 ----------------------TKGFNLECLDLKMN-GAAIAIDERCQTSMHNVWAIGDVAGEPMLAHRAMAQGEMVAEI  211 (220)
T ss_dssp             ----------------------CSSSSGGGSCCCEE-TTEECCCTTCBCSSTTEEECGGGGCSSCCHHHHHHHHHHHHHH
T ss_pred             ----------------------ccCCcceeeehhhc-CCcccccchhhcCCCCEEEEEEeCCcccchhhhhhhHHHHHHH
Confidence                                  00000122222322 4779999999999999999999999999999999999999999


Q ss_pred             hhCCC
Q psy14927       1070 IAGDK 1074 (1074)
Q Consensus      1070 I~~~~ 1074 (1074)
                      |+|+.
T Consensus       212 i~G~~  216 (220)
T d1lvla1         212 IAGKA  216 (220)
T ss_dssp             HTTCC
T ss_pred             HcCCC
Confidence            99863

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.63  E-value=7.7e-16  Score=163.38  Aligned_cols=175  Identities=26%  Similarity=0.379  Sum_probs=124.2

Q ss_pred             chhhhhhccccchHHHHHHHhh------hhhhhccc--------ccc---------------------------------
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT------KLFTQAGD--------KGV---------------------------------  826 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~------~l~e~~~~--------~g~---------------------------------  826 (1074)
                      +.+||||||||||++||+++++      .++|....        .|+                                 
T Consensus         3 ~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~~~~~~~~iGGtc~~~gcip~K~l~~~a~~~~~~~~~~~~Gi~~   82 (240)
T d1feca1           3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGWEL   82 (240)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEC
T ss_pred             ccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEeccCCcccccccccccccccchhhhhccccccccccccccccccccc
Confidence            3459999999999999999988      24443221        111                                 


Q ss_pred             -----ccchhhhhhhhhHHHhhhhhhHHHHhhh-CCeEEEeeeEEEecCCeEEEEeC----CCCeeEEEcCeEEEccCCC
Q psy14927        827 -----KLNLETMMGTKSAAVKALTGGIAHLFKS-NKVTQLNGHGKITGPNTVTVIKS----DGSTEEVKTKNILIATGSE  896 (1074)
Q Consensus       827 -----~~~~~~~~~~~~~~~~~l~~~~~~~l~~-~gV~~~~g~v~~id~~~~~v~~~----~G~~~~i~~d~lIIATG~~  896 (1074)
                           .++|..+..++...+..+...+...+.. .+|+++.+.....++........    .+..+.+.+|.++|+||+.
T Consensus        83 ~~~~v~~d~~~l~~~k~~~v~~~~~~~~~~l~~~~~v~i~~g~a~~~~~~~~~~~~~~~~~~~~~e~i~~~~i~ia~G~~  162 (240)
T d1feca1          83 DRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSW  162 (240)
T ss_dssp             CGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEEECCCEE
T ss_pred             cccccccCHHHHHHHhhcEEeccccceeeeeccCCcEEEEEeeccccccccccccccccccccceEEEecceEEEecCCc
Confidence                 1234444444444444555555555544 47999999887777765554432    3334578899999999988


Q ss_pred             CCCCCCCCCCCcceechhhHhcchHhhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEe
Q psy14927        897 VTPFPGIEVDEETIVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASK  976 (1074)
Q Consensus       897 p~~ipgi~~~~~~v~t~~~~~~~~~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~  976 (1074)
                      |...+ +                           .                                             
T Consensus       163 p~~~~-~---------------------------~---------------------------------------------  169 (240)
T d1feca1         163 PQHLG-I---------------------------E---------------------------------------------  169 (240)
T ss_dssp             ECCCC-S---------------------------B---------------------------------------------
T ss_pred             eeEcc-c---------------------------c---------------------------------------------
Confidence            73211 0                           0                                             


Q ss_pred             cCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcH
Q psy14927        977 SGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLA 1056 (1074)
Q Consensus       977 ~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~ 1056 (1074)
                                                      .|+...++++..|++++++|+|.||++++||+|||||+|||++++.++
T Consensus       170 --------------------------------~~~~~~l~l~~~gv~~~~~G~I~vd~~~~Ts~~~iyA~GDv~~~~~~~  217 (240)
T d1feca1         170 --------------------------------VPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRVMLT  217 (240)
T ss_dssp             --------------------------------EESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTTEEECGGGGCSCCCH
T ss_pred             --------------------------------ccccCCCCccccCeEECCCCcEEcCcccCcCCCCEEEEEECCCCccch
Confidence                                            011112346778899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhCC
Q psy14927       1057 HKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1057 ~~A~~~G~~aA~~I~~~ 1073 (1074)
                      +.|..+|+.||.+|+++
T Consensus       218 ~~A~~eg~~aa~~~~~~  234 (240)
T d1feca1         218 PVAINEGAAFVDTVFAN  234 (240)
T ss_dssp             HHHHHHHHHHHHHHHSS
T ss_pred             hhHHHHHHHHHHHHhCC
Confidence            99999999999999985

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.63  E-value=4.7e-16  Score=163.98  Aligned_cols=74  Identities=46%  Similarity=0.825  Sum_probs=68.7

Q ss_pred             CEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHhhCC
Q psy14927       1000 DALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1000 D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                      +.++.++|++|+++.++++.+|+++|+.|+|.||++++|+.|+|||+||++.+|.+++.|..+|..||.+|++.
T Consensus       155 ~~~~~~~G~~p~~~~l~l~~~gv~~~~~g~i~vd~~~~T~~~~v~A~GD~~~g~~l~~~a~~~G~~aa~~i~~~  228 (233)
T d1v59a1         155 SEVTPFVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGPMLAHKAEEEGIAAVEMLKTG  228 (233)
T ss_dssp             EEECCCSCEEECCTTSCTTTTTCCBCTTSCBCCCTTSBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHS
T ss_pred             cccceecccccCCCCcCchhcCeEEcCCCcEEECCeEecCCCCEEEEcCCcccHHHHHHHHHHHHHHHHHHccC
Confidence            44566889999999888899999999999999999999999999999999999999999999999999999864

>d1h6va3 d.87.1.1 (A:367-499) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=3e-15  Score=142.17  Aligned_cols=79  Identities=23%  Similarity=0.355  Sum_probs=63.2

Q ss_pred             EEEEeeccCccchhhhc-CCCcceEEEEEE-CCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHHhhhcccCCccccc
Q psy14927        455 YKVGKFPFAANSRAKTN-NDTDGFVKVLGD-KLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVE  532 (1074)
Q Consensus       455 ~~v~~~~~~~~~ra~~~-~~~~G~~Kli~~-~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l~~~~~~hPt~s~e  532 (1074)
                      +.+....+....++... ....|+.+++++ +++++|||+|++|++|+|+|+.+++||+++.|+.+|.+++|+|||++|.
T Consensus        33 v~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ILGa~ivg~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~  112 (133)
T d1h6va3          33 IEVYHSFFWPLEWTVPSRDNNKCYAKVICNLKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKQQLDSTIGIHPVCAEI  112 (133)
T ss_dssp             EEEEEEEECCHHHHTTTCCTTCEEEEEEEEGGGTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCTTCGGGG
T ss_pred             cchheeccchhhhhhhhhcccccceEEEEEecCcccEEEEEEeCCCHHHHHHHHHHHHHcCCCHHHHhhccccCCCHHHH
Confidence            44444555555554443 345566655555 5799999999999999999999999999999999999999999999987


Q ss_pred             c
Q psy14927        533 K  533 (1074)
Q Consensus       533 ~  533 (1074)
                      +
T Consensus       113 ~  113 (133)
T d1h6va3         113 F  113 (133)
T ss_dssp             G
T ss_pred             H
Confidence            6

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.52  E-value=2.4e-14  Score=151.13  Aligned_cols=68  Identities=34%  Similarity=0.500  Sum_probs=57.3

Q ss_pred             cCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHhhCCC
Q psy14927       1006 VGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074 (1074)
Q Consensus      1006 ~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I~~~~ 1074 (1074)
                      +|..|++..+.+...++.++ +|+|.||+++||++|+|||+|||++.+.+++.|..+|+.||++|+|.+
T Consensus       167 ~~~~~~~~~l~~~~~gv~~~-~G~I~vde~~~T~~~~iyAvGDv~~~~~l~~~A~~eg~~aa~~i~g~~  234 (238)
T d1aoga1         167 NGRSPRTKDLQLQNAGVMIK-NGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAAALVDTVFGTT  234 (238)
T ss_dssp             CCEEECCGGGCGGGTTCCEE-TTEECCCTTCBCSSTTEEECGGGGTSCCCHHHHHHHHHHHHHHHHSSS
T ss_pred             cccccceeeecccccEEEEc-CCeEEecCCeeeccCCEEEEEEecCCccchhhHHHHHHHHHHHHcCCC
Confidence            34455555555566677765 789999999999999999999999999999999999999999999853

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.45  E-value=2.3e-13  Score=139.46  Aligned_cols=144  Identities=21%  Similarity=0.255  Sum_probs=108.3

Q ss_pred             hhHHhhcC--CcEEEEecCCccCCCCCCH--------------HHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEE
Q psy14927        922 GSVWGRLG--AEVTAIEFMNAIGGMGIDG--------------EVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTI  985 (1074)
Q Consensus       922 A~~l~~~G--~~Vtlv~~~~~~~~~~~~~--------------~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~  985 (1074)
                      |..|++++  .+||++++++.+.  ..++              .+.....+.+++.||++++++.|.+++.+++.+.+. 
T Consensus        16 A~~l~~~~~~~~V~v~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V~~i~~~~~~v~~~-   92 (198)
T d1nhpa1          16 VEELLNLHPDAEIQWYEKGDFIS--FLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEITAIQPKEHQVTVK-   92 (198)
T ss_dssp             HHHHHHHCTTSEEEEEESSSSSS--BCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEEEEETTTTEEEEE-
T ss_pred             HHHHHhcCCCCeEEEEeCCCccc--ccccCcchhhcccccchHHHHHhhHHHHHHCCcEEEEeeceeeEeeccccceee-
Confidence            56666664  5899999877552  1111              111122467889999999999999999876665444 


Q ss_pred             eeccCCCCceEEEcCEEEEccCCccc--------CCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCC-----
Q psy14927        986 ENVKDPTKKEELSCDALLVCVGRRPY--------THNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHG----- 1052 (1074)
Q Consensus       986 ~~~~~~g~~~~i~~D~vi~a~G~~p~--------~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~----- 1052 (1074)
                       +.. +|++.++++|.+|+++|..|+        +.+  + ..+++++++|+|.||++++|+.|+|||+|||+..     
T Consensus        93 -~~~-~g~~~~~~~D~li~a~G~~~~~~~g~~~~~~~--~-~~~~~~~~~G~i~vd~~~~T~~~~IyA~GD~a~~~~~~~  167 (198)
T d1nhpa1          93 -DLV-SGEERVENYDKLIISPGAVPFELDGVRPNTAW--L-KGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPA  167 (198)
T ss_dssp             -ETT-TCCEEEEECSEEEECCCEEECCCCCEEESCGG--G-TTTSCBCTTSCBCCCTTCBCSSTTEEECGGGSCEEEGGG
T ss_pred             -ecc-cccccccccceeeEeecceeeccccccccccc--c-cccceeccCCceecCCcccccccceEEecceeecccccC
Confidence             333 577788999999999987764        333  2 2367788999999999999999999999999863     


Q ss_pred             -----CCcHHHHHHHHHHHHHHhhCC
Q psy14927       1053 -----PMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1053 -----~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
                           ...+..|..+|+.||.||.+.
T Consensus       168 ~~~~~~~~a~~A~~~g~~aa~ni~~~  193 (198)
T d1nhpa1         168 DTEVNIALATNARKQGRFAVKNLEEP  193 (198)
T ss_dssp             TEEECCCCHHHHHHHHHHHHHTSSSC
T ss_pred             CCcccccHHHHHHHHHHHHHHhhCCC
Confidence                 236889999999999999763

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=1.3e-13  Score=143.48  Aligned_cols=168  Identities=26%  Similarity=0.403  Sum_probs=122.1

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhcccccccc-------------------------------------chh
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL-------------------------------------NLE  831 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~-------------------------------------~~~  831 (1074)
                      +.+|+||||||||++||..+++     +++|+. ..||..                                     ++.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~-~~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~   80 (217)
T d1gesa1           2 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWE   80 (217)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecc-CcCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccccHH
Confidence            3459999999999999999999     677764 344321                                     222


Q ss_pred             hhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCccee
Q psy14927        832 TMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIV  911 (1074)
Q Consensus       832 ~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~  911 (1074)
                      .+..++....+.+...+...+.+.||+++.+.....+......   ++  ..+.++.+|||||+.|. +|          
T Consensus        81 ~~~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~~~~~~~---~~--~~~~~~~~iiatG~~p~-ip----------  144 (217)
T d1gesa1          81 TLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEV---NG--ETITADHILIATGGRPS-HP----------  144 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETTEEEE---TT--EEEEEEEEEECCCEEEC-CC----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccceeeeecC---CC--ceeeeeeeeeecCcccc-CC----------
Confidence            2233333333444455667778889998888666655554432   34  57889999999998762 11          


Q ss_pred             chhhHhcchHhhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCC
Q psy14927        912 SSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDP  991 (1074)
Q Consensus       912 t~~~~~~~~~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~  991 (1074)
                                                                                                      
T Consensus       145 --------------------------------------------------------------------------------  144 (217)
T d1gesa1         145 --------------------------------------------------------------------------------  144 (217)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHhh
Q psy14927        992 TKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus       992 g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                                      ..|+++.+++...++.++++|++.+|+.++|+.|+||++||+..++.+++.+...|..++.+++
T Consensus       145 ----------------~ip~~~~l~l~~~gv~~~~~~~i~~d~~~~t~~~~i~~iG~g~~g~ela~~~~~~G~~v~~~~~  208 (217)
T d1gesa1         145 ----------------REPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAVELTPVAVAAGRRLSERLF  208 (217)
T ss_dssp             ----------------EEESCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECSGGGTSCCCHHHHHHHHHHHHHHHH
T ss_pred             ----------------CCCCcCCcccccccEEEcCCccEeeCchhccCCCcEEEECCCccHHHHHHHHHHHHHHHHHHHh
Confidence                            1233333345566777888999999999999999999999999999999999999999999998


Q ss_pred             CCC
Q psy14927       1072 GDK 1074 (1074)
Q Consensus      1072 ~~~ 1074 (1074)
                      +++
T Consensus       209 ~~~  211 (217)
T d1gesa1         209 NNK  211 (217)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            753

>d1nhpa3 d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.44  E-value=4.3e-14  Score=133.13  Aligned_cols=100  Identities=18%  Similarity=0.074  Sum_probs=80.6

Q ss_pred             ceEEeccchhhccHHHH-hccccccccccccccccccccccCCcceEEEEeccCCCcccccccccCCCcEEEEeeccCcc
Q psy14927        387 DIILPVEKWTLLSLARV-LEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPGIEYKVGKFPFAAN  465 (1074)
Q Consensus       387 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~v~~~~~~~~  465 (1074)
                      .|+=|.+|+|||||++| ++|+++++.                                              .++....
T Consensus         9 ~vfd~eiasvGlte~eA~~~g~~~~~~----------------------------------------------~~~~~~~   42 (126)
T d1nhpa3           9 AVFDYKFASTGINEVMAQKLGKETKAV----------------------------------------------TVVEDYL   42 (126)
T ss_dssp             EETTEEEEEEECCHHHHHHHTCCCEEE----------------------------------------------EEEEESS
T ss_pred             eEcCccEEEecccHHHHHHCCCCEEEE----------------------------------------------EEecCcc
Confidence            34448899999999999 777776533                                              2222222


Q ss_pred             chhhhcCCCcceEEEEEECCCCcEEEEEEeCCC-hhHHHHHHHHHHHcCCCHHHHhhhccc-CCcccccc
Q psy14927        466 SRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPA-AGELINEAVLAMEYGASCEDVARTCHA-HPTVCVEK  533 (1074)
Q Consensus       466 ~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~-a~eli~~~a~a~~~~~~~~~l~~~~~~-hPt~s~e~  533 (1074)
                       +....+.+.||+|+++|++|++|||+|++|++ ++|+|+.+++|++.+.|++||.+++++ |||+++..
T Consensus        43 -~~~~~~~~~g~~Kli~d~~t~~IlG~~ivG~~~a~e~I~~~~~ai~~~~t~~dL~~~~~~yhPt~se~~  111 (126)
T d1nhpa3          43 -MDFNPDKQKAWFKLVYDPETTQILGAQLMSKADLTANINAISLAIQAKMTIEDLAYADFFFQPAFDKPW  111 (126)
T ss_dssp             -CTTCTTCCEEEEEEEECTTTCBEEEEEEEESSCCTTHHHHHHHHHHTTCBHHHHHTCCCCCCTTTCCSS
T ss_pred             -hhhcCCCcceeEEEEEECCCCCEEEEEEEechhHHHHHHHHHHHHHcCCCHHHHhcCcccCCCCCchhH
Confidence             22234677899999999999999999999975 999999999999999999999999987 79998653

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.42  E-value=7.2e-14  Score=141.38  Aligned_cols=141  Identities=15%  Similarity=0.194  Sum_probs=102.5

Q ss_pred             hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHH----------HHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCC
Q psy14927        922 GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQ----------RILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDP  991 (1074)
Q Consensus       922 A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~----------~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~  991 (1074)
                      |..|+++|.+|+++.++++...+...+.+...+.          ......+|+++.+..++++..+..  .+.+.+    
T Consensus        19 A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~~~~~--~~~~~~----   92 (183)
T d1d7ya1          19 VAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFDPQAH--TVALSD----   92 (183)
T ss_dssp             HHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEETCCEEEEETTTT--EEEETT----
T ss_pred             HHHHHhcCCceEEEEEecccccchhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEEeccccccccccc--eeEecC----
Confidence            6778888988877776666553322232222221          123456899999999999987544  344443    


Q ss_pred             CCceEEEcCEEEEccCCcccCCccC---ccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCC----------CcHHH
Q psy14927        992 TKKEELSCDALLVCVGRRPYTHNLG---LEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGP----------MLAHK 1058 (1074)
Q Consensus       992 g~~~~i~~D~vi~a~G~~p~~~~l~---l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~----------~~~~~ 1058 (1074)
                        ++++++|.+|+|+|..|++.++.   ....++..  +|.|.||+++||+.|+|||+|||+..+          +++..
T Consensus        93 --g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~gl~~--~~~I~vd~~~~ts~~~IyA~GD~a~~~~~~~g~~~~~~~~~~  168 (183)
T d1d7ya1          93 --GRTLPYGTLVLATGAAPRAVLANDALARAAGLAC--DDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSN  168 (183)
T ss_dssp             --SCEEECSEEEECCCEEECCEEECCHHHHHTTCCB--SSSEECCTTCBCSSTTEEECGGGEEEECTTTCSEEECCCHHH
T ss_pred             --CcEeeeeeEEEEEEEEcccccccccccceeeEee--CCcEEeccceeccccccchhhhhhccceeeCCceechhHHHH
Confidence              56899999999999999876543   12334443  456999999999999999999998532          36889


Q ss_pred             HHHHHHHHHHHhhC
Q psy14927       1059 AEDEGIVCVEGIAG 1072 (1074)
Q Consensus      1059 A~~~G~~aA~~I~~ 1072 (1074)
                      |..||+.+|+||+.
T Consensus       169 A~~qg~~aa~nil~  182 (183)
T d1d7ya1         169 AQNQGIAVARHLVD  182 (183)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcC
Confidence            99999999999985

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.33  E-value=1.9e-12  Score=128.56  Aligned_cols=135  Identities=20%  Similarity=0.284  Sum_probs=99.8

Q ss_pred             hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHH-------------HHHHHhCCCEEEeCceEEEEEecCCeEEEEEeec
Q psy14927        922 GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQF-------------QRILGKQGMQFKLGTKVTGASKSGDNITVTIENV  988 (1074)
Q Consensus       922 A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~-------------~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~  988 (1074)
                      |..|++ +.+||++++.+.+.  ..++.+...+             .+.+.+.++++++++.++.+.....   +...+ 
T Consensus        16 A~~l~~-~~~Vtvv~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~---~~~~~-   88 (167)
T d1xhca1          16 AKQLSQ-TYEVTVIDKEPVPY--YSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLIDRGRK---VVITE-   88 (167)
T ss_dssp             HHHHTT-TSEEEEECSSSSCC--CCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEEETTTT---EEEES-
T ss_pred             HHHHHc-CCCEEEEecccccc--ccccchhhhhhhhhhhhhhhHHHHHHHHhccceeeeeccccccccccc---ccccc-
Confidence            445544 67999999876543  1222222222             3567788999999999999876432   22233 


Q ss_pred             cCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCC----CCcHHHHHHHHH
Q psy14927        989 KDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHG----PMLAHKAEDEGI 1064 (1074)
Q Consensus       989 ~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~----~~~~~~A~~~G~ 1064 (1074)
                           +.++++|.+|+++|.+|+ .+  +...|++.+.  .|.||++++|+.|+|||+|||+..    +..+..|+.+|+
T Consensus        89 -----~~~i~~D~li~a~G~~~~-~~--~~~~gl~~~~--~i~v~~~~~t~~~~i~aiGD~~~~~~~~~~~~~~a~~~a~  158 (167)
T d1xhca1          89 -----KGEVPYDTLVLATGAPNV-DL--ARRSGIHTGR--GILIDDNFRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQAR  158 (167)
T ss_dssp             -----SCEEECSEEEECCCEECC-HH--HHHTTCCBSS--SEECCTTSBCSSTTEEECGGGEEBTTBCCCSHHHHHHHHH
T ss_pred             -----ccccccceeEEEEEecCC-ch--hhhcCceeCC--ceeeccccEecCCCeEEeeecccCCCeEEChHHHHHHHHH
Confidence                 347999999999999775 44  5677887654  499999999999999999999864    346889999999


Q ss_pred             HHHHHhhCC
Q psy14927       1065 VCVEGIAGD 1073 (1074)
Q Consensus      1065 ~aA~~I~~~ 1073 (1074)
                      .+|.||+|+
T Consensus       159 ~~a~~i~Ge  167 (167)
T d1xhca1         159 VLADILKGE  167 (167)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHcCCC
Confidence            999999985

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.25  E-value=7.9e-14  Score=149.43  Aligned_cols=125  Identities=15%  Similarity=0.251  Sum_probs=82.6

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhcccccc-----------------------------------ccchhhhhh
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGV-----------------------------------KLNLETMMG  835 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~-----------------------------------~~~~~~~~~  835 (1074)
                      +|+||||||||+.||.++++     .++|+.. .||                                   .++|..+..
T Consensus         3 DviVIG~G~aG~~aA~~aa~~G~~V~liE~~~-~GGtc~n~gciPsK~l~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~   81 (259)
T d1onfa1           3 DLIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPLLVE   81 (259)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHHHHH
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCeEEeeCCcchHHHHhhhhcccchhccccccccchhhhhhhhHHh
Confidence            48999999999999999999     5677643 333                                   123444445


Q ss_pred             hhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCC---------CeeEEEcCeEEEccCCCC----CCCCC
Q psy14927        836 TKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDG---------STEEVKTKNILIATGSEV----TPFPG  902 (1074)
Q Consensus       836 ~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G---------~~~~i~~d~lIIATG~~p----~~ipg  902 (1074)
                      ++......+...+...+.+.||+++.|++.+++++.+.|...++         +.+.+++|++|||||++|    +.+|+
T Consensus        82 ~~~~~i~~~~~~~~~~l~~~gV~vi~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~i~a~~iiIATGs~P~~~~~~~~~  161 (259)
T d1onfa1          82 RRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVGRSPDTEN  161 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCCCBCCBCCTTTT
T ss_pred             hhheeeeccccchhhhcccccceEEeeecccccccccccccceeccccccCccceEEEeeeeEEEecCCCCccccccccc
Confidence            55555556666677888899999999998888887766643221         225699999999999998    35777


Q ss_pred             CCCCCcceechhhHhcchH
Q psy14927        903 IEVDEETIVSSTGALSLKK  921 (1074)
Q Consensus       903 i~~~~~~v~t~~~~~~~~~  921 (1074)
                      ++.+...++++++++.+..
T Consensus       162 ~~l~~~~i~ts~~~~~~d~  180 (259)
T d1onfa1         162 LKLEKLNVETNNNYIVVDE  180 (259)
T ss_dssp             SSCTTTTCCBSSSCEEECT
T ss_pred             cccccceeeeccccccccc
Confidence            7767777888887776554

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.23  E-value=4.1e-12  Score=128.10  Aligned_cols=142  Identities=20%  Similarity=0.192  Sum_probs=101.1

Q ss_pred             hhHHhhcCCcEEEEecCCccCCCCCC--------------HHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEee
Q psy14927        922 GSVWGRLGAEVTAIEFMNAIGGMGID--------------GEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIEN  987 (1074)
Q Consensus       922 A~~l~~~G~~Vtlv~~~~~~~~~~~~--------------~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~  987 (1074)
                      |..|+++|.+|+++.+.+....+...              ..............++.+..+..+..+..+..  .+...+
T Consensus        19 A~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~   96 (185)
T d1q1ra1          19 AFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQVTAINRDRQ--QVILSD   96 (185)
T ss_dssp             HHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCEEEEETTTT--EEEETT
T ss_pred             HHHHHHcCCceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhcccceeeeccceeeeeccccc--EEEeec
Confidence            67788999988887766654322111              11111123445667788888887777766433  343332


Q ss_pred             ccCCCCceEEEcCEEEEccCCcccCCccC-ccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCC----------CCcH
Q psy14927        988 VKDPTKKEELSCDALLVCVGRRPYTHNLG-LEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHG----------PMLA 1056 (1074)
Q Consensus       988 ~~~~g~~~~i~~D~vi~a~G~~p~~~~l~-l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~----------~~~~ 1056 (1074)
                            +.++++|.+++++|.+|+++.+. +...++..  +|.|.||+++|||.|+|||+|||+..          ++++
T Consensus        97 ------~~~i~~d~~i~~~G~~~~~~~~~~~~~~~~~~--~~~i~Vd~~~~ts~~~vya~GD~~~~~~~~~~~~~~~~~a  168 (185)
T d1q1ra1          97 ------GRALDYDRLVLATGGRPLIPNCELASAAGLQV--DNGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESV  168 (185)
T ss_dssp             ------SCEEECSEEEECCCEEEEEECCHHHHHTTCCB--SSSEECCTTSBCSSTTEEECGGGEEEEETTTTEEEECCSH
T ss_pred             ------eeEEEeeeeeeeeecccCCCCchhHHhCCccc--cCccccCCccccchhhhhcchhhhccccccCCcccchhhH
Confidence                  57899999999999988655432 24445543  57799999999999999999999764          2478


Q ss_pred             HHHHHHHHHHHHHhhCC
Q psy14927       1057 HKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus      1057 ~~A~~~G~~aA~~I~~~ 1073 (1074)
                      +.|.+||+.||.||+|+
T Consensus       169 ~~A~~~g~~aa~~i~G~  185 (185)
T d1q1ra1         169 PNALEQARKIAAILCGK  185 (185)
T ss_dssp             HHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHccCC
Confidence            99999999999999985

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.20  E-value=3e-11  Score=113.11  Aligned_cols=106  Identities=31%  Similarity=0.482  Sum_probs=94.1

Q ss_pred             CCCCCCCCCcceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhC
Q psy14927        899 PFPGIEVDEETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQ  961 (1074)
Q Consensus       899 ~ipgi~~~~~~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~  961 (1074)
                      .+|++|. ..+++++++++.+..                 |..|+++|.+||+++++++++ +.+++++.+.+.+.|+++
T Consensus         3 ~lP~ip~-~~~i~ts~~~l~l~~~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il-~~~d~~~~~~l~~~l~~~   80 (125)
T d1ojta2           3 KLPFIPE-DPRIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLM-QGADRDLVKVWQKQNEYR   80 (125)
T ss_dssp             CCSSCCC-CTTEECHHHHTTCCCCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSS-TTSCHHHHHHHHHHHGGG
T ss_pred             CCCCCCC-CCcEEcHHHhhCccccCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccc-ccchhhHHHHHHHHHHHc
Confidence            5677764 467899999998877                 999999999999999999999 789999999999999999


Q ss_pred             CCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927        962 GMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus       962 gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
                      ||++++++.+++++.+++++.+.+++.+  |+.+++++|.|++|+|+
T Consensus        81 gv~~~~~~~v~~v~~~~~g~~v~~~~~~--g~~~~i~~D~vl~A~GR  125 (125)
T d1ojta2          81 FDNIMVNTKTVAVEPKEDGVYVTFEGAN--APKEPQRYDAVLVAAGR  125 (125)
T ss_dssp             EEEEECSCEEEEEEEETTEEEEEEESSS--CCSSCEEESCEEECCCE
T ss_pred             CcccccCcEEEEEEEcCCcEEEEEEeCC--CCeEEEEcCEEEEecCC
Confidence            9999999999999998888888877633  55678999999999996

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.20  E-value=3.7e-11  Score=112.34  Aligned_cols=104  Identities=51%  Similarity=0.828  Sum_probs=92.9

Q ss_pred             CCCCCCCCcceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCC
Q psy14927        900 FPGIEVDEETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQG  962 (1074)
Q Consensus       900 ipgi~~~~~~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~g  962 (1074)
                      +||++.++.+++++++++.+.+                 |..|.++|.+||+++|+++++ +.+++++...+.+.|++.|
T Consensus         2 iPgi~~d~~~v~ts~~~l~l~~~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l-~~~d~~~~~~l~~~l~~~G   80 (123)
T d1dxla2           2 LPGVTIDEKKIVSSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV-PTMDAEIRKQFQRSLEKQG   80 (123)
T ss_dssp             BTTBCCCSSSEECHHHHTTCSSCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS-TTSCHHHHHHHHHHHHHSS
T ss_pred             CCCCcCCCCeEEeHHHhhCccccCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccC-chhhhcchhhhhhhhhccc
Confidence            6888878889999999998776                 999999999999999999999 8999999999999999999


Q ss_pred             CEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEc
Q psy14927        963 MQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVC 1005 (1074)
Q Consensus       963 V~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a 1005 (1074)
                      |++++++.+.+++..++++.+++.... +|++++++||.|++|
T Consensus        81 I~i~~~~~v~~i~~~~~~~~v~~~~~~-~g~~~~i~~D~vLvA  122 (123)
T d1dxla2          81 MKFKLKTKVVGVDTSGDGVKLTVEPSA-GGEQTIIEADVVLVS  122 (123)
T ss_dssp             CCEECSEEEEEEECSSSSEEEEEEESS-SCCCEEEEESEEECC
T ss_pred             ceEEcCCceEEEEEccCeEEEEEEECC-CCeEEEEEcCEEEEc
Confidence            999999999999988788777776543 566788999999987

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=6.1e-12  Score=130.17  Aligned_cols=109  Identities=21%  Similarity=0.281  Sum_probs=88.5

Q ss_pred             HHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCC-CCCeeeCC
Q psy14927        956 RILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDE-KGRVPVNS 1034 (1074)
Q Consensus       956 ~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~-~G~I~Vd~ 1034 (1074)
                      ..+++.||+++++++|++|+.+++  .|++.+      +++++||.+|+|+|..|+...+ ....|+++++ .|.|.||+
T Consensus        91 ~~~~~~gI~~~~g~~V~~id~~~~--~V~l~d------G~~i~~d~lViAtG~~~~~~~l-~~~~gl~~~~~~~~i~vd~  161 (213)
T d1m6ia1          91 PHIENGGVAVLTGKKVVQLDVRDN--MVKLND------GSQITYEKCLIATGGTEPNVEL-AKTGGLEIDSDFGGFRVNA  161 (213)
T ss_dssp             TTSTTCEEEEEETCCEEEEEGGGT--EEEETT------SCEEEEEEEEECCCEEEECCTT-HHHHTCCBCTTTCSEECCT
T ss_pred             HHHHHCCeEEEeCCEEEEeeccCc--eeeecc------ceeeccceEEEeeeeecchhhh-hhccchhhhhhhhhhhhhH
Confidence            345678999999999999987654  455554      5689999999999987766443 5667888754 58899999


Q ss_pred             CCCCCCCCEEEecccCCC---------CCcHHHHHHHHHHHHHHhhCCC
Q psy14927       1035 RFQTVIPNIFAIGDCIHG---------PMLAHKAEDEGIVCVEGIAGDK 1074 (1074)
Q Consensus      1035 ~~~ts~~~IyAiGD~~~~---------~~~~~~A~~~G~~aA~~I~~~~ 1074 (1074)
                      ++||+ |+|||+|||+..         +..+..|..||+.||.||+|.+
T Consensus       162 ~l~~~-~~VyA~GD~a~~~~~~~g~~~i~~~~~A~~~gr~aa~ni~g~~  209 (213)
T d1m6ia1         162 ELQAR-SNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAA  209 (213)
T ss_dssp             TCEEE-TTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHTSCC
T ss_pred             hcCcC-CceEEeeeeeeeccccCCcEEeeEhHHHHHHHHHHHHHhcCCC
Confidence            99998 999999999753         3468899999999999999863

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.17  E-value=9.1e-11  Score=108.96  Aligned_cols=98  Identities=44%  Similarity=0.703  Sum_probs=89.3

Q ss_pred             CCcceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeC
Q psy14927        906 DEETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLG  968 (1074)
Q Consensus       906 ~~~~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~  968 (1074)
                      ++..++++++++.+..                 |..|+++|++||+++++++++ |.+++++...+.+.|++.||+++++
T Consensus         5 d~~~v~~s~~~l~l~~~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll-~~~d~ei~~~l~~~l~~~Gv~i~~~   83 (119)
T d3lada2           5 DQDVIVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFL-PAVDEQVAKEAQKILTKQGLKILLG   83 (119)
T ss_dssp             CSSSEEEHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS-TTSCHHHHHHHHHHHHHTTEEEEET
T ss_pred             CCCEEEchhHhhCcccCCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccC-CcccchhHHHHHHHHHhcCceeecC
Confidence            5678999999998777                 999999999999999999999 8999999999999999999999999


Q ss_pred             ceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccC
Q psy14927        969 TKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVG 1007 (1074)
Q Consensus       969 ~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G 1007 (1074)
                      +++++++.+++++.+++.+   .+.++++.||.||+|+|
T Consensus        84 ~~v~~i~~~~~~v~v~~~~---~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          84 ARVTGTEVKNKQVTVKFVD---AEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             CEEEEEEECSSCEEEEEES---SSEEEEEEESEEEECSC
T ss_pred             cEEEEEEEeCCEEEEEEEE---CCCCEEEECCEEEEeeC
Confidence            9999999988888888876   34457899999999998

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.16  E-value=1.2e-10  Score=108.51  Aligned_cols=103  Identities=55%  Similarity=0.870  Sum_probs=88.6

Q ss_pred             CCCCCCCcceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCC
Q psy14927        901 PGIEVDEETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGM  963 (1074)
Q Consensus       901 pgi~~~~~~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV  963 (1074)
                      ||++.++.+++++++++.+..                 |..|.++|.+||+++++++++ |.+++++.+.+.+.|++.||
T Consensus         1 Pgi~~d~~~v~ts~~~~~l~~~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l-~~~d~ei~~~l~~~l~~~GV   79 (122)
T d1v59a2           1 PGIEIDEEKIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIG-ASMDGEVAKATQKFLKKQGL   79 (122)
T ss_dssp             TTCCCCSSSEECHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-SSSCHHHHHHHHHHHHHTTC
T ss_pred             CCCccCCCEEEehHHhhCcccCCCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccc-hhhhhhhHHHHHHHHHhccc
Confidence            567667788999999998766                 899999999999999999999 88999999999999999999


Q ss_pred             EEEeCceEEEEEecCCe--EEEEEeeccCCCCceEEEcCEEEEc
Q psy14927        964 QFKLGTKVTGASKSGDN--ITVTIENVKDPTKKEELSCDALLVC 1005 (1074)
Q Consensus       964 ~i~~~~~v~~i~~~~~~--~~v~~~~~~~~g~~~~i~~D~vi~a 1005 (1074)
                      ++++++++++++..+++  +.+++.+.. +++++++++|.|++|
T Consensus        80 ~i~~~~~v~~v~~~~~~~~v~~~~~~~~-~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          80 DFKLSTKVISAKRNDDKNVVEIVVEDTK-TNKQENLEAEVLLVA  122 (122)
T ss_dssp             EEECSEEEEEEEEETTTTEEEEEEEETT-TTEEEEEEESEEEEC
T ss_pred             eEEeCCEEEEEEEeCCCcEEEEEEEeCC-CCCeEEEEeCEEEEC
Confidence            99999999999976665  445555533 456788999999986

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.16  E-value=2.2e-12  Score=137.91  Aligned_cols=114  Identities=25%  Similarity=0.427  Sum_probs=95.6

Q ss_pred             EEEEeCCChhHHHHHHHHHHHcCCCHHHHhhhcccCCccccccccccCCcccccCCCchHHHhhcchhhHHhccCccccC
Q psy14927        491 GVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKAR  570 (1074)
Q Consensus       491 G~~iiG~~a~eli~~~a~a~~~~~~~~~l~~~~~~hPt~s~e~~~~~ggtc~n~GCvpkk~l~~aa~~~~~~~~~~a~~~  570 (1074)
                      .+.|||.+++.+.. +..|.+.|+++            .-+|. +.+||||+|+||+|||+|++++++....+.  +..+
T Consensus         3 DviVIG~G~aG~~a-A~~aa~~G~~V------------~liE~-~~~GGtc~n~gciPsK~l~~~~~~~~~~~~--~~~~   66 (259)
T d1onfa1           3 DLIVIGGGSGGMAA-ARRAARHNAKV------------ALVEK-SRLGGTCVNVGCVPKKIMFNAASVHDILEN--SRHY   66 (259)
T ss_dssp             SEEEECCSHHHHHH-HHHHHHTTCCE------------EEEES-SSTTHHHHHTSHHHHHHHHHHHHHHHHHHH--GGGG
T ss_pred             eEEEECCCHHHHHH-HHHHHHCCCeE------------EEEec-CCCCCeEEeeCCcchHHHHhhhhcccchhc--cccc
Confidence            36789999999884 55555788765            34454 689999999999999999999999888765  7789


Q ss_pred             CeeccCcccCHHHHHHHHHHHHHHHHHHHHHHhhhCccchhhHHHHHHHhhhhHHHHHHHHHHHHhh
Q psy14927        571 GIEVEGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKALKIITKQIILILIIYRVLLKWWAQYIEST  637 (1074)
Q Consensus       571 G~~~~~~~~~w~~~~~~~~~~i~~l~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~l~~~~a~~~e~~  637 (1074)
                      ||.. .+.++|..+++++++.|..++..+..+|++.||+                +++|+|.|.+.+
T Consensus        67 G~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~gV~----------------vi~G~a~f~~~~  116 (259)
T d1onfa1          67 GFDT-KFSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVD----------------LYEGTASFLSEN  116 (259)
T ss_dssp             TCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE----------------EEESCCCCC---
T ss_pred             cccc-hhhhhhhhHHhhhheeeeccccchhhhcccccce----------------EEeeeccccccc
Confidence            9974 4889999999999999999999999999999999                888888887654

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.11  E-value=3e-10  Score=105.19  Aligned_cols=100  Identities=29%  Similarity=0.472  Sum_probs=88.0

Q ss_pred             CCCCCCCcceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCC
Q psy14927        901 PGIEVDEETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGM  963 (1074)
Q Consensus       901 pgi~~~~~~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV  963 (1074)
                      |++|.. ..++++++++.+.+                 |..|.++|.+||+++++++++ +.+++++++.+.+.|+++||
T Consensus         1 P~~~~~-~~i~~s~~~l~~~~~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il-~~~d~~~~~~l~~~l~~~GI   78 (117)
T d1ebda2           1 PNFKFS-NRILDSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEIL-SGFEKQMAAIIKKRLKKKGV   78 (117)
T ss_dssp             TTBCCC-SSEECHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS-TTSCHHHHHHHHHHHHHTTC
T ss_pred             CcCCCC-CCEEChhHhhChhhcCCeEEEECCCccceeeeeeecccccEEEEEEecceec-ccccchhHHHHHHHHHhcCC
Confidence            455544 47899999998776                 889999999999999999999 78999999999999999999


Q ss_pred             EEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEc
Q psy14927        964 QFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVC 1005 (1074)
Q Consensus       964 ~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a 1005 (1074)
                      ++++++.+++++..++++.+.+..   +|+++++++|.||++
T Consensus        79 ~i~~~~~v~~i~~~~~~~~v~~~~---~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          79 EVVTNALAKGAEEREDGVTVTYEA---NGETKTIDADYVLVT  117 (117)
T ss_dssp             EEEESEEEEEEEEETTEEEEEEEE---TTEEEEEEESEEEEC
T ss_pred             EEEcCCEEEEEEEcCCEEEEEEEe---CCCEEEEEeEEEEEC
Confidence            999999999999888887787765   466788999999984

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=2.7e-10  Score=105.22  Aligned_cols=97  Identities=24%  Similarity=0.408  Sum_probs=84.2

Q ss_pred             CCCCCCCCcceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCC
Q psy14927        900 FPGIEVDEETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQG  962 (1074)
Q Consensus       900 ipgi~~~~~~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~g  962 (1074)
                      +||+    .+++++++++.+.+                 |..|+++|.+||+++++++++ |.+++++.+.+.+.|+++|
T Consensus         2 iPG~----e~~~t~~~~~~l~~~p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l-~~~d~~~~~~~~~~l~~~G   76 (116)
T d1gesa2           2 IPGV----EYGIDSDGFFALPALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPL-PSFDPMISETLVEVMNAEG   76 (116)
T ss_dssp             STTG----GGSBCHHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-TTSCHHHHHHHHHHHHHHS
T ss_pred             cCCc----cccCCHHHHhChhhCCCEEEEECCChhhHHHHHHhhccccEEEEEeecchhh-hhcchhhHHHHHHHHHHCC
Confidence            5765    35688899888776                 888999999999999999999 8999999999999999999


Q ss_pred             CEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEcCEEEEccC
Q psy14927        963 MQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVG 1007 (1074)
Q Consensus       963 V~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G 1007 (1074)
                      |++++++.++++..++++ +.+++.+      ++++++|.||+|+|
T Consensus        77 V~~~~~~~v~~i~~~~~~~~~v~~~~------g~~~~~D~vi~a~G  116 (116)
T d1gesa2          77 PQLHTNAIPKAVVKNTDGSLTLELED------GRSETVDCLIWAIG  116 (116)
T ss_dssp             CEEECSCCEEEEEECTTSCEEEEETT------SCEEEESEEEECSC
T ss_pred             CEEEeCCEEEEEEEcCCcEEEEEECC------CCEEEcCEEEEecC
Confidence            999999999999886554 5666554      46899999999998

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=1.9e-11  Score=121.49  Aligned_cols=92  Identities=15%  Similarity=0.114  Sum_probs=74.9

Q ss_pred             cchhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEe
Q psy14927        793 QRQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKIT  867 (1074)
Q Consensus       793 ~k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~i  867 (1074)
                      ++++|+|||||||||+||++|++     ++||+.+..|+++.+...++..... .++..++..++++.||+|++|+.  +
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~-~~~~~~~~~~~~~~gV~i~l~~~--V  118 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEF-YETLRYYRRMIEVTGVTLKLNHT--V  118 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTH-HHHHHHHHHHHHHHTCEEEESCC--C
T ss_pred             CCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEEeCcccchH-HHHHHHHHHhhhcCCeEEEeCCE--E
Confidence            36669999999999999999998     8999999999999887666665544 67777888999999999999942  2


Q ss_pred             cCCeEEEEeCCCCeeEEEcCeEEEccCCCCC
Q psy14927        868 GPNTVTVIKSDGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       868 d~~~~~v~~~~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      +.        +.   ...||.||||||+.|.
T Consensus       119 t~--------~~---~~~~d~vilAtG~~~~  138 (179)
T d1ps9a3         119 TA--------DQ---LQAFDETILASGIPNR  138 (179)
T ss_dssp             CS--------SS---SCCSSEEEECCCEECC
T ss_pred             cc--------cc---cccceeEEEeecCCCc
Confidence            21        11   3569999999999874

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.03  E-value=6.2e-10  Score=112.74  Aligned_cols=139  Identities=22%  Similarity=0.223  Sum_probs=105.9

Q ss_pred             hhHHhhcCCcEEEEecCCccCC---------------C-----CCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeE
Q psy14927        922 GSVWGRLGAEVTAIEFMNAIGG---------------M-----GIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNI  981 (1074)
Q Consensus       922 A~~l~~~G~~Vtlv~~~~~~~~---------------~-----~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~  981 (1074)
                      |..+++.|.+|+++++......               +     ..++++...+.+.+++.|+++... .|.++...++..
T Consensus        21 A~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q~~~~g~~i~~~-~V~~~~~~~~~~   99 (192)
T d1vdca1          21 AIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTIFTE-TVTKVDFSSKPF   99 (192)
T ss_dssp             HHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEECC-CCCEEECSSSSE
T ss_pred             HHHHHHcCCcEEEEEeecccccccccccccchhhhccccccccccchHHHHHHHHHHHhhcceeeee-eEEecccccCcE
Confidence            6677889999999975543210               1     123566777777788899999866 588887665554


Q ss_pred             EEEEeeccCCCCceEEEcCEEEEccCC-----cccCCccCccccCcccCCCCCeeeCC-CCCCCCCCEEEecccCCCC-C
Q psy14927        982 TVTIENVKDPTKKEELSCDALLVCVGR-----RPYTHNLGLEEIGIEKDEKGRVPVNS-RFQTVIPNIFAIGDCIHGP-M 1054 (1074)
Q Consensus       982 ~v~~~~~~~~g~~~~i~~D~vi~a~G~-----~p~~~~l~l~~~gl~ld~~G~I~Vd~-~~~ts~~~IyAiGD~~~~~-~ 1054 (1074)
                      .+..       ...+..+|.+++++|.     .|++.++   ..++++|++|+|.+|+ +++|+.|||||+|||.+.+ .
T Consensus       100 ~v~~-------~~~~~~~~~~~~a~g~~~~g~~p~~~~~---~~~veld~~G~i~~~~~~~~Ts~~GV~a~GDv~~~~~r  169 (192)
T d1vdca1         100 KLFT-------DSKAILADAVILAIGAVAKGHEPATKFL---DGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYR  169 (192)
T ss_dssp             EEEC-------SSEEEEEEEEEECCCEEECCEEESCGGG---TTSSCBCTTSCBCCCTTSCBCSSTTEEECGGGGCSSCC
T ss_pred             Eecc-------cceeeeeeeEEEEeeeeecccCchHHHh---cCceeecCCCeEEeCCCceEecCCCEEEeeecCCcccc
Confidence            4432       2467889999999885     5777753   4579999999999995 7899999999999999875 4


Q ss_pred             cHHHHHHHHHHHHHHhh
Q psy14927       1055 LAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1055 ~~~~A~~~G~~aA~~I~ 1071 (1074)
                      ++..|+.+|..||.++.
T Consensus       170 ~~v~A~g~G~~aA~~~~  186 (192)
T d1vdca1         170 QAITAAGTGCMAALDAE  186 (192)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEechHHHHHHHH
Confidence            78999999999998764

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=3.2e-09  Score=99.23  Aligned_cols=102  Identities=18%  Similarity=0.288  Sum_probs=86.0

Q ss_pred             CCCCCCCCcceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCC
Q psy14927        900 FPGIEVDEETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQG  962 (1074)
Q Consensus       900 ipgi~~~~~~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~g  962 (1074)
                      +||.    .+++|+++++.+..                 |..|+++|.+||+++|+++++ |.+++++++.+.+.|+++|
T Consensus         3 IPG~----e~~~ts~~~~~l~~~pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l-~~~d~~~~~~~~~~l~~~G   77 (125)
T d3grsa2           3 IPGA----SLGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAG   77 (125)
T ss_dssp             STTG----GGSBCHHHHTTCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC-TTSCHHHHHHHHHHHHHTT
T ss_pred             CCCc----cccCCHHHHhChhhcCCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccc-cchhhHHHHHHHHHHHHCC
Confidence            5664    35689999888775                 889999999999999999999 8899999999999999999


Q ss_pred             CEEEeCceEEEEEecCCeEEEEEeeccCCCC----ceEEEcCEEEEccC
Q psy14927        963 MQFKLGTKVTGASKSGDNITVTIENVKDPTK----KEELSCDALLVCVG 1007 (1074)
Q Consensus       963 V~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~----~~~i~~D~vi~a~G 1007 (1074)
                      |++++++++++|+.++++..+++.... .|.    ...+++|.||||+|
T Consensus        78 v~i~~~~~v~~i~~~~~g~~v~~~~~~-~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          78 VEVLKFSQVKEVKKTLSGLEVSMVTAV-PGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             CEEETTEEEEEEEEETTEEEEEEEECC-TTSCCEEEEEEEESEEEECSC
T ss_pred             CEEEeCCEEEEEEEcCCeEEEEEEEcc-CCcCcCccccccCCEEEEEeC
Confidence            999999999999988888766655422 222    34678999999998

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.93  E-value=2.4e-09  Score=98.68  Aligned_cols=97  Identities=23%  Similarity=0.314  Sum_probs=81.7

Q ss_pred             CCCCCCCCCcceechhhHhcchH----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCC
Q psy14927        899 PFPGIEVDEETIVSSTGALSLKK----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQG  962 (1074)
Q Consensus       899 ~ipgi~~~~~~v~t~~~~~~~~~----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~g  962 (1074)
                      ++||+    ..++++++++.+.+                |..|.++|++||+++|+++++ +.+++++++.+.+.|+++|
T Consensus         3 ~IpG~----e~~~ts~~~~~l~~p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il-~~~d~~~~~~~~~~l~~~g   77 (117)
T d1onfa2           3 PVKGI----ENTISSDEFFNIKESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL-RKFDESVINVLENDMKKNN   77 (117)
T ss_dssp             SCTTG----GGCEEHHHHTTCCCCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC-TTSCHHHHHHHHHHHHHTT
T ss_pred             ccCCH----hHcCchhHHhccCCCCEEEEECCchHHHHHHHHHHhccccceeeehhcccc-ccccHHHHHHHHHHHHhCC
Confidence            56665    35789999987766                888999999999999999999 8999999999999999999


Q ss_pred             CEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEE-EcCEEEEcc
Q psy14927        963 MQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEEL-SCDALLVCV 1006 (1074)
Q Consensus       963 V~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i-~~D~vi~a~ 1006 (1074)
                      |++++++.+++++..+++ +.+++.+    |  +.+ .+|.||||+
T Consensus        78 V~i~~~~~v~~i~~~~~~~~~v~~~~----G--~~~~~~D~Vi~AI  117 (117)
T d1onfa2          78 INIVTFADVVEIKKVSDKNLSIHLSD----G--RIYEHFDHVIYCV  117 (117)
T ss_dssp             CEEECSCCEEEEEESSTTCEEEEETT----S--CEEEEESEEEECC
T ss_pred             CEEEECCEEEEEEEcCCCeEEEEECC----C--CEEEeCCEEEEeC
Confidence            999999999999865544 6666654    3  344 689999985

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.93  E-value=1.7e-09  Score=99.94  Aligned_cols=93  Identities=23%  Similarity=0.353  Sum_probs=76.6

Q ss_pred             ceechhhHhcchH-----------------hhHHhh---cCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeC
Q psy14927        909 TIVSSTGALSLKK-----------------GSVWGR---LGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLG  968 (1074)
Q Consensus       909 ~v~t~~~~~~~~~-----------------A~~l~~---~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~  968 (1074)
                      .++|+++++.+.+                 |..+.+   .|.+||+++++++++ |.++++++..+++.|+++||+++++
T Consensus         4 ~~~ts~~~~~l~~~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il-~~~d~~~~~~~~~~l~~~GI~v~~~   82 (117)
T d1feca2           4 LCITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL-RGFDSELRKQLTEQLRANGINVRTH   82 (117)
T ss_dssp             GCBCHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS-TTSCHHHHHHHHHHHHHTTEEEEET
T ss_pred             EEEchHHhhCccccCCeEEEECCChHHHHHHHHhHhhcccccccceeccccccc-ccccchhhHHHHHHHhhCcEEEEcC
Confidence            4567777776654                 555444   488999999999999 8899999999999999999999999


Q ss_pred             ceEEEEEecCCe-EEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927        969 TKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus       969 ~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
                      +.|++|+..+++ ..+.+++      +.+++||.||+|+|+
T Consensus        83 ~~v~~i~~~~~g~~~v~~~~------g~~i~~D~Vi~a~GR  117 (117)
T d1feca2          83 ENPAKVTKNADGTRHVVFES------GAEADYDVVMLAIGR  117 (117)
T ss_dssp             CCEEEEEECTTSCEEEEETT------SCEEEESEEEECSCE
T ss_pred             CEEEEEEECCCCEEEEEECC------CCEEEcCEEEEecCC
Confidence            999999876554 4555554      468999999999996

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.88  E-value=2.8e-09  Score=98.09  Aligned_cols=94  Identities=30%  Similarity=0.428  Sum_probs=78.5

Q ss_pred             CcceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCc
Q psy14927        907 EETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGT  969 (1074)
Q Consensus       907 ~~~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~  969 (1074)
                      +.+++++++++.+..                 |..|+++|++||++++.++++ |.+++++++.+++.|+++||++++++
T Consensus         5 g~~~~~s~~~l~~~~~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il-~~~d~~~~~~l~~~l~~~gV~i~~~~   83 (115)
T d1lvla2           5 GGPVISSTEALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERIL-PTYDSELTAPVAESLKKLGIALHLGH   83 (115)
T ss_dssp             BTTEECHHHHTCCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS-TTSCHHHHHHHHHHHHHHTCEEETTC
T ss_pred             CCcEECChHHhCcccCCCeEEEECCCHHHHHHHHHHhhcccceEEEeeecccc-ccccchhHHHHHHHHHhhcceEEcCc
Confidence            446778888877655                 889999999999999999999 88999999999999999999999999


Q ss_pred             eEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccC
Q psy14927        970 KVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVG 1007 (1074)
Q Consensus       970 ~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G 1007 (1074)
                      .|+++++  +.. +....   .+.++++++|.||+|+|
T Consensus        84 ~V~~i~~--~~~-~~~~~---~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          84 SVEGYEN--GCL-LANDG---KGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             EEEEEET--TEE-EEECS---SSCCCEECCSCEEECCC
T ss_pred             EEEEEcC--CeE-EEEEc---CCCeEEEEcCEEEEecC
Confidence            9999964  332 22222   25567899999999998

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.87  E-value=6.2e-09  Score=104.93  Aligned_cols=140  Identities=19%  Similarity=0.227  Sum_probs=100.5

Q ss_pred             hhHHhhcCCcEEEEecCCccC---------------CCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEe
Q psy14927        922 GSVWGRLGAEVTAIEFMNAIG---------------GMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIE  986 (1074)
Q Consensus       922 A~~l~~~G~~Vtlv~~~~~~~---------------~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~  986 (1074)
                      |..+++.|.+|+|+++.+...               ....+.++.+.+...+.+.++++..+ .|..+...++...++..
T Consensus        21 A~~~ar~g~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~V~~~~~~~~~~~v~~~   99 (190)
T d1trba1          21 AVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD-HINKVDLQNRPFRLNGD   99 (190)
T ss_dssp             HHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECC-CEEEEECSSSSEEEEES
T ss_pred             HHHHHHcCCceEEEEeecccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcEEecc-eeEEEecCCCcEEEEEe
Confidence            778889999999998764310               01124566777778888999999865 58888776655555432


Q ss_pred             eccCCCCceEEEcCEEEEccCCcccCCccC--ccccCcccCCCCCeeeCC-----CCCCCCCCEEEecccCCCC-CcHHH
Q psy14927        987 NVKDPTKKEELSCDALLVCVGRRPYTHNLG--LEEIGIEKDEKGRVPVNS-----RFQTVIPNIFAIGDCIHGP-MLAHK 1058 (1074)
Q Consensus       987 ~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~--l~~~gl~ld~~G~I~Vd~-----~~~ts~~~IyAiGD~~~~~-~~~~~ 1058 (1074)
                             ...+.++.+++++|..|......  +....++++ +|+|.+|+     .++|++||||++|||++.+ .++..
T Consensus       100 -------~~~~~~~~viva~G~~~~~~~~~~~~~~~~~e~~-~g~i~~~~~~~~~~~~T~v~gV~aaGDv~~~~~~q~i~  171 (190)
T d1trba1         100 -------NGEYTCDALIIATGASARYHSPNTAIFEGQLELE-NGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAIT  171 (190)
T ss_dssp             -------SCEEEEEEEEECCCEEECCEEESCGGGTTTSCEE-TTEECCCCSSSSCTTBCSSTTEEECGGGGCSSSCCHHH
T ss_pred             -------eeeEeeeeeeeecceeeeeecccceeecceEecC-CcEEEEecCCcccccccccCeEEEeEEecCcceeEEEE
Confidence                   35789999999999765422100  112234444 58899984     5579999999999999754 58999


Q ss_pred             HHHHHHHHHHHh
Q psy14927       1059 AEDEGIVCVEGI 1070 (1074)
Q Consensus      1059 A~~~G~~aA~~I 1070 (1074)
                      |+.+|..||.++
T Consensus       172 Aag~G~~AA~~a  183 (190)
T d1trba1         172 SAGTGCMAALDA  183 (190)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             EeccHHHHHHHH
Confidence            999999999765

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.86  E-value=3.3e-09  Score=98.51  Aligned_cols=98  Identities=20%  Similarity=0.278  Sum_probs=79.6

Q ss_pred             CcceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCc
Q psy14927        907 EETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGT  969 (1074)
Q Consensus       907 ~~~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~  969 (1074)
                      ..+.+|+++++.+.+                 |..|+++|.+|||+.++ +++ +.+++++++.+.+.|++.||+|++++
T Consensus         4 ~e~~~tsd~~~~l~~~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~-~~l-~~~D~~~~~~l~~~l~~~Gv~i~~~~   81 (122)
T d1h6va2           4 KEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILL-RGFDQDMANKIGEHMEEHGIKFIRQF   81 (122)
T ss_dssp             HHHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-SSS-TTSCHHHHHHHHHHHHHTTEEEEESC
T ss_pred             cceeEcchHHhCcccCCCeEEEECCCccHHHHHHHHhhcCCeEEEEEec-hhh-ccCCHHHHHHHHHHHHHCCCEEEECC
Confidence            346678888888776                 99999999999999875 677 89999999999999999999999999


Q ss_pred             eEEEEEecCC----eEEEEEeeccCCCCceEEEcCEEEEccC
Q psy14927        970 KVTGASKSGD----NITVTIENVKDPTKKEELSCDALLVCVG 1007 (1074)
Q Consensus       970 ~v~~i~~~~~----~~~v~~~~~~~~g~~~~i~~D~vi~a~G 1007 (1074)
                      .+++++..++    .+.+++.... +++...++||.|++|+|
T Consensus        82 ~v~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          82 VPTKIEQIEAGTPGRLKVTAKSTN-SEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             EEEEEEEEECSTTCEEEEEEECTT-SCEEEEEEESEEECCCC
T ss_pred             EEEEEEEecCCCccEEEEEEEECC-CCcEEEEECCEEEEEeC
Confidence            9999975322    3556665532 34455678999999998

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.85  E-value=3.2e-09  Score=103.44  Aligned_cols=121  Identities=16%  Similarity=0.092  Sum_probs=94.9

Q ss_pred             ccCCCC---CCCCCCCCCCcceechhhHhcchH--------------------hhHHhhcCCcEEEEecCCccCCCCCCH
Q psy14927        892 ATGSEV---TPFPGIEVDEETIVSSTGALSLKK--------------------GSVWGRLGAEVTAIEFMNAIGGMGIDG  948 (1074)
Q Consensus       892 ATG~~p---~~ipgi~~~~~~v~t~~~~~~~~~--------------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~  948 (1074)
                      |||+.|   .++||++.+..+++|+++++....                    |..|+++|++||++++.+.++ +.+++
T Consensus         4 atG~~~~~~~pipG~~~~~~~v~t~~d~l~~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~-~~~~~   82 (156)
T d1djqa2           4 TDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLAN-YMHFT   82 (156)
T ss_dssp             SSCCCTTTSSCCTTCCTTSTTEECHHHHHHTCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTT-HHHHT
T ss_pred             CCCCCCCCCCCCCCccCCCCEEECHHHHhcCccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccc-cccch
Confidence            799886   368998877789999999987766                    999999999999999999887 67888


Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccC
Q psy14927        949 EVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKD 1025 (1074)
Q Consensus       949 ~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld 1025 (1074)
                      .....+.+.|.+.||++++++.+.+|+++  .+.+  .+.      .....+.++..+|..|+...  ....+++.|
T Consensus        83 ~~~~~~~~~l~~~GV~i~~~~~v~~i~~~--~v~l--~~~------~~~~~~~v~~~~g~~~~~~~--~~~~~le~D  147 (156)
T d1djqa2          83 LEYPNMMRRLHELHVEELGDHFCSRIEPG--RMEI--YNI------WGDGSKRTYRGPGVSPRDAN--TSHRWIEFD  147 (156)
T ss_dssp             TCHHHHHHHHHHTTCEEEETEEEEEEETT--EEEE--EET------TCSCSCCCCCCTTSCSSCCC--CCCEEEECS
T ss_pred             hHHHHHHHHHhhccceEEeccEEEEecCc--ceEE--Eee------eccccceeeeeeEEEecccC--CccCcEecc
Confidence            88899999999999999999999999873  3333  331      12335667777777777765  445555544

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=98.83  E-value=8.3e-10  Score=121.54  Aligned_cols=115  Identities=10%  Similarity=0.138  Sum_probs=72.6

Q ss_pred             HHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccC------ccc--CC
Q psy14927        955 QRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIG------IEK--DE 1026 (1074)
Q Consensus       955 ~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~g------l~l--d~ 1026 (1074)
                      ...+++.|+++++++.|++|..+++++.+.+.+.  ++++++++||.||+|++............+.      +..  ..
T Consensus       242 ~~l~~~~g~~i~~~~~V~~I~~~~~~v~v~~~~~--~~~~~~~~aD~VI~A~p~~~l~~i~~~p~l~~~~~~ai~~~~~~  319 (370)
T d2iida1         242 TAMYRDIQDKVHFNAQVIKIQQNDQKVTVVYETL--SKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAHALRSVFTP  319 (370)
T ss_dssp             HHHHHHTGGGEESSCEEEEEEECSSCEEEEEECS--SSCCCEEEESEEEECSCHHHHTTSEEESCCCHHHHHHHHHCCCT
T ss_pred             HHHHHhcCCccccCceEEEEEEeCCeEEEEEEec--CCCeEEEEeeEEEecCCHHHHhhCccCCCCCHHHHHHHHhcCCc
Confidence            3445678999999999999999888888777653  3667889999999998643211100000000      000  00


Q ss_pred             CCCeeeCCCCCCCCCCEEEecccCCCCC-cHHHHHHHHHHHHHHhh
Q psy14927       1027 KGRVPVNSRFQTVIPNIFAIGDCIHGPM-LAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1027 ~G~I~Vd~~~~ts~~~IyAiGD~~~~~~-~~~~A~~~G~~aA~~I~ 1071 (1074)
                      ..+...+..+.++..+||++||++..+. .+..|+..|..||.+|-
T Consensus       320 ~~~~~~~~~~~~~~g~v~~aGd~~~~~~~~~~~a~~sG~~aA~~i~  365 (370)
T d2iida1         320 YQFQHFSDPLTASQGRIYFAGEYTAQAHGWIDSTIKSGLRAARDVN  365 (370)
T ss_dssp             THHHHHHHHHHCCBTTEEECSGGGSSSSSCHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhhcccCCEEEecccccCCCcccHHHHHHHHHHHHHHH
Confidence            0001111222234457999999877553 46789999999999873

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=98.82  E-value=2.6e-09  Score=113.01  Aligned_cols=122  Identities=16%  Similarity=0.283  Sum_probs=81.7

Q ss_pred             CCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe--EEEEEeeccCCCCceEEEcCEEEEccCCcccCCccC------
Q psy14927        945 GIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN--ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLG------ 1016 (1074)
Q Consensus       945 ~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~------ 1016 (1074)
                      .....+.+.+.+.+++.||++++++.|+++...+++  +.+.+..     .+.++.+|.||+|+|-.+.+.+ +      
T Consensus       106 ~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~-----~~~~~~a~~VIiAtGG~S~p~~-G~~g~g~  179 (253)
T d2gqfa1         106 EGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQV-----NSTQWQCKNLIVATGGLSMPGL-GATPFGY  179 (253)
T ss_dssp             TCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEE-----TTEEEEESEEEECCCCSSCGGG-TCCSHHH
T ss_pred             cchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEec-----CCEEEEeCEEEEcCCccccccc-CCCchHH
Confidence            345677888889999999999999999999875544  2222222     2468999999999997643321 1      


Q ss_pred             --ccccCcccCC-----CCCe---eeC-CCCCC-CCCCEEEecccCCC-----CCcHHHHHHHHHHHHHHhhC
Q psy14927       1017 --LEEIGIEKDE-----KGRV---PVN-SRFQT-VIPNIFAIGDCIHG-----PMLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus      1017 --l~~~gl~ld~-----~G~I---~Vd-~~~~t-s~~~IyAiGD~~~~-----~~~~~~A~~~G~~aA~~I~~ 1072 (1074)
                        ++.+|+.+-+     .|.|   .+| .++++ .+||+|.+|-+.+.     .-..+.|...|..|+.+|..
T Consensus       180 ~~a~~~~~~i~~~~~~~~ggv~~~~i~~~t~es~~~~gl~~~ge~ldv~g~~gg~n~~~a~~s~~~~~~~~~~  252 (253)
T d2gqfa1         180 QIAEQFGIPVIPPRAVTMGGVDTKVISSKTMESNQVSGLYFIGEVLDVTGWLGGYNFQWAWSSAYACALSISR  252 (253)
T ss_dssp             HHHHHTTCCEEEEEEEEEEEECGGGBCTTTCBBSSSTTEEECGGGBSCEECTTTHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhccccccccccccCCCCcccccCccchhhhcCCCcEEeeeEEEeeeecCCEehhhhHhHHHHHHHHHhc
Confidence              1222222110     0112   244 35665 68999999977652     22467899999999999864

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.80  E-value=9e-09  Score=95.35  Aligned_cols=76  Identities=18%  Similarity=0.321  Sum_probs=67.2

Q ss_pred             hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCE
Q psy14927        922 GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDA 1001 (1074)
Q Consensus       922 A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~ 1001 (1074)
                      |..|++.|++||++++++++++..+++++++.+.+.++++||++++++.++++..  +  .+.+++      +++++||+
T Consensus        46 A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~~~~--~--~v~l~d------g~~i~~D~  115 (121)
T d1d7ya2          46 AATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVD--G--VVLLDD------GTRIAADM  115 (121)
T ss_dssp             HHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEET--T--EEEETT------SCEEECSE
T ss_pred             HHHhhcccceEEEEeeccccccccCCHHHHHHHHHHHHHCCcEEEeCCEEEEEeC--C--EEEECC------CCEEECCE
Confidence            8889999999999999999995578999999999999999999999999998875  3  355554      46899999


Q ss_pred             EEEccC
Q psy14927       1002 LLVCVG 1007 (1074)
Q Consensus      1002 vi~a~G 1007 (1074)
                      ||+|+|
T Consensus       116 vi~a~G  121 (121)
T d1d7ya2         116 VVVGIG  121 (121)
T ss_dssp             EEECSC
T ss_pred             EEEeeC
Confidence            999998

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.80  E-value=1.1e-08  Score=94.16  Aligned_cols=91  Identities=19%  Similarity=0.272  Sum_probs=76.3

Q ss_pred             ceechhhHhcchH-----------------hhHHhhcC---CcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeC
Q psy14927        909 TIVSSTGALSLKK-----------------GSVWGRLG---AEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLG  968 (1074)
Q Consensus       909 ~v~t~~~~~~~~~-----------------A~~l~~~G---~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~  968 (1074)
                      +++|+++++.+.+                 |..+..+|   .+||+++++++++ |.+++++++.+.+.|+++||+++++
T Consensus         6 ~~~t~~~~~~l~~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL-~~~d~~~~~~l~~~l~~~GV~v~~~   84 (117)
T d1aoga2           6 HCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL-RGFDHTLREELTKQLTANGIQILTK   84 (117)
T ss_dssp             GCBCHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS-TTSCHHHHHHHHHHHHHTTCEEEES
T ss_pred             ceEcHHHHhCchhcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh-cccchHHHHHHHHHHHhcCcEEEcC
Confidence            5788888887765                 65555554   5799999999999 8999999999999999999999999


Q ss_pred             ceEEEEEecCCe-EEEEEeeccCCCCceEEEcCEEEEcc
Q psy14927        969 TKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCV 1006 (1074)
Q Consensus       969 ~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~ 1006 (1074)
                      +++++++..+++ ..+++++      +++++||.||||+
T Consensus        85 ~~v~~ie~~~~~~~~v~~~~------G~~i~~D~Vi~AI  117 (117)
T d1aoga2          85 ENPAKVELNADGSKSVTFES------GKKMDFDLVMMAI  117 (117)
T ss_dssp             CCEEEEEECTTSCEEEEETT------SCEEEESEEEECS
T ss_pred             CEEEEEEEcCCCeEEEEECC------CcEEEeCEEEEeC
Confidence            999999875544 6666655      4689999999985

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.79  E-value=1.4e-10  Score=126.06  Aligned_cols=108  Identities=16%  Similarity=0.164  Sum_probs=69.9

Q ss_pred             CCEEEeCceEEEEEecCCe------EEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCccc-----------
Q psy14927        962 GMQFKLGTKVTGASKSGDN------ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEK----------- 1024 (1074)
Q Consensus       962 gV~i~~~~~v~~i~~~~~~------~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~l----------- 1024 (1074)
                      +.++++++.|++|..+.+.      ..+...... .++++.+++|.||++++..+-..+. ....+...           
T Consensus       243 ~~~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~D~Vi~a~p~~~l~~l~-~~~~~~~~~~~~~~~~~~~  320 (373)
T d1seza1         243 EDELRLNSRVLELSCSCTEDSAIDSWSIISASPH-KRQSEEESFDAVIMTAPLCDVKSMK-IAKRGNPFLLNFIPEVYGH  320 (373)
T ss_dssp             TTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSS-SSCBCCCEESEEEECSCHHHHHTSE-EESSSSBCCCTTSCCCCCT
T ss_pred             cceEecCCEEEEEEEeCCcccccccceEEecccC-CCCceEEECCEEEECCchHHhhhcc-cccCCCccchhhhcccccc
Confidence            6788999999999865432      233333322 3557789999999998743211110 00000000           


Q ss_pred             CCCCCeeeCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHhhC
Q psy14927       1025 DEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus      1025 d~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I~~ 1072 (1074)
                      +.++.+.+++.++|++||||++||+.+++ .+..|+.+|..||..|+.
T Consensus       321 ~~~~~~~~~~~~~t~~pglf~aGd~~~g~-~~~~A~~~G~~aA~~i~~  367 (373)
T d1seza1         321 NYDSVLDAIDKMEKNLPGLFYAGNHRGGL-SVGKALSSGCNAADLVIS  367 (373)
T ss_dssp             THHHHHHHHHHHHHHSTTEEECCSSSSCS-SHHHHHHHHHHHHHHHHH
T ss_pred             CCCcEeecccccCCCCCCEEEEecCCCch-hHHHHHHHHHHHHHHHHH
Confidence            01122334456778999999999998876 688899999999999863

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.75  E-value=3e-09  Score=109.67  Aligned_cols=104  Identities=26%  Similarity=0.470  Sum_probs=90.0

Q ss_pred             EEEEeCCChhHHHHHHHHHHHcCCCHHHHhhhcccCCccccccccccCCcccccCCCchHHHhhcchhhHHhccCccccC
Q psy14927        491 GVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKAR  570 (1074)
Q Consensus       491 G~~iiG~~a~eli~~~a~a~~~~~~~~~l~~~~~~hPt~s~e~~~~~ggtc~n~GCvpkk~l~~aa~~~~~~~~~~a~~~  570 (1074)
                      .+.|||.+.+.+. .+..+.+.|+++            .-+|. +.+||||+|+||+|+|.|.+++++.+..+ ..+..+
T Consensus         4 DvvVIG~G~aG~~-aA~~a~~~G~kV------------~iiE~-~~~GGtc~~~gc~p~k~l~~~a~~~~~~~-~~~~~~   68 (217)
T d1gesa1           4 DYIAIGGGSGGIA-SINRAAMYGQKC------------ALIEA-KELGGTCVNVGCVPKKVMWHAAQIREAIH-MYGPDY   68 (217)
T ss_dssp             EEEEECCSHHHHH-HHHHHHTTTCCE------------EEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHHHH-TTGGGG
T ss_pred             CEEEECCCHHHHH-HHHHHHHCCCEE------------EEEec-cCcCCeEecccccccccchhhHHHHHHHH-hhhhhc
Confidence            4788999999987 455555788754            33444 68999999999999999999999998776 347889


Q ss_pred             CeeccCcccCHHHHHHHHHHHHHHHHHHHHHHhhhCccc
Q psy14927        571 GIEVEGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKAL  609 (1074)
Q Consensus       571 G~~~~~~~~~w~~~~~~~~~~i~~l~~~~~~~l~~~~i~  609 (1074)
                      |+....+.+||+.++++++.+++.++..++.++++.+|+
T Consensus        69 g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~gV~  107 (217)
T d1gesa1          69 GFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVD  107 (217)
T ss_dssp             TEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred             CccCCcccccHHHHHHHHHHHHHHHHHHHHHHHhCCeEE
Confidence            999888999999999999999999999999999999999

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=1.1e-08  Score=97.16  Aligned_cols=77  Identities=14%  Similarity=0.198  Sum_probs=68.9

Q ss_pred             hhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEc
Q psy14927        926 GRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVC 1005 (1074)
Q Consensus       926 ~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a 1005 (1074)
                      ...|.+||++++.++++++.++++++..+.+.|+++||++++++.|++++.+++++.+++.+      ++++++|.||+|
T Consensus        61 ~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~~~GV~~~~~~~V~~i~~~~~~~~v~l~~------G~~i~aD~Vi~A  134 (137)
T d1m6ia2          61 RALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKD------GRKVETDHIVAA  134 (137)
T ss_dssp             HHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETT------SCEEEESEEEEC
T ss_pred             HhcCCEEEEecccccCCcccCCHHHHHHHHHHHHhCCcEEEeCCEEEEEEecCCEEEEEECC------CCEEECCEEEEe
Confidence            35699999999999999557899999999999999999999999999999988888887765      468999999999


Q ss_pred             cCC
Q psy14927       1006 VGR 1008 (1074)
Q Consensus      1006 ~G~ 1008 (1074)
                      +|.
T Consensus       135 ~Gv  137 (137)
T d1m6ia2         135 VGL  137 (137)
T ss_dssp             CCE
T ss_pred             ecC
Confidence            994

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.74  E-value=4.6e-09  Score=109.62  Aligned_cols=105  Identities=15%  Similarity=0.269  Sum_probs=80.7

Q ss_pred             EEEeCCChhHHHHHHHHHHHcCCCHHHHhhhcccCCccccccccccCCcccccCCCchHHHhhcchhhHHhccCccccCC
Q psy14927        492 VHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARG  571 (1074)
Q Consensus       492 ~~iiG~~a~eli~~~a~a~~~~~~~~~l~~~~~~hPt~s~e~~~~~ggtc~n~GCvpkk~l~~aa~~~~~~~~~~a~~~G  571 (1074)
                      +.|||.+.+.+... ..|.+.+.....         ..-+| ...+||+|+|+||||+|.|+.++++.+..+.  +..+|
T Consensus         4 viVIG~GpaG~~aA-~~aa~~~~~~~~---------V~liE-k~~~GG~cln~GciPsK~ll~~a~~~~~~~~--~~~~G   70 (233)
T d1xdia1           4 IVILGGGPAGYEAA-LVAATSHPETTQ---------VTVID-CDGIGGAAVLDDCVPSKTFIASTGLRTELRR--APHLG   70 (233)
T ss_dssp             EEEECCSHHHHHHH-HHHHHHCTTTEE---------EEEEE-SSCTTHHHHHTSHHHHHHHHHHHHHHHHHTT--TTTTT
T ss_pred             EEEECCCHHHHHHH-HHHHHcCCCCCE---------EEEEe-cCCCCceeecccccccEEEEeecchhhhhhh--hhhcC
Confidence            45799999997743 334455642100         01233 3689999999999999999999999988764  77888


Q ss_pred             eecc--CcccCHHHHHHHHHHHHHHHHHHHHHHhhhCccc
Q psy14927        572 IEVE--GVKLNLETMMGTKSAAVKALTGGIAHLFKSNKAL  609 (1074)
Q Consensus       572 ~~~~--~~~~~w~~~~~~~~~~i~~l~~~~~~~l~~~~i~  609 (1074)
                      +.+.  .+.+||+.++++++.++..++..+...|++++|+
T Consensus        71 ~~i~~~~~~~d~~~~~~~~~~v~~~~~~~~~~~~~~~gV~  110 (233)
T d1xdia1          71 FHIDFDDAKISLPQIHARVKTLAAAQSADITAQLLSMGVQ  110 (233)
T ss_dssp             BC------CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred             CcccccCceeeeeeeccccceeeeeeecceehhhccccee
Confidence            7654  5789999999999999999999999999999999

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.72  E-value=3.9e-11  Score=125.90  Aligned_cols=141  Identities=11%  Similarity=0.000  Sum_probs=79.7

Q ss_pred             cchhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhh---CCeEEEeeeE
Q psy14927        793 QRQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKS---NKVTQLNGHG  864 (1074)
Q Consensus       793 ~k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~---~gV~~~~g~v  864 (1074)
                      +.++|+||||||||++||..|++     +++|+.+..|+.+.+...++..... ..........+..   .++.+...  
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--  124 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEW-SYHRDYRETQITKLLKKNKESQLA--  124 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGGG-GHHHHHHHHHHHHHHTTCTTCEEE--
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCccccccccceeecc-cccchhHHHHHHHHhhcceeeeee--
Confidence            36669999999999999999999     8999999999988765544433322 1222222222222   22221111  


Q ss_pred             EEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCC--CCCCCCC-------cceechhh-----------HhcchHhhH
Q psy14927        865 KITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPF--PGIEVDE-------ETIVSSTG-----------ALSLKKGSV  924 (1074)
Q Consensus       865 ~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~i--pgi~~~~-------~~v~t~~~-----------~~~~~~A~~  924 (1074)
                          .....++..+.  .++.||+||||||+.+..+  ++.....       .......+           .....-|..
T Consensus       125 ----~~~~~~~~~~~--~~~~~d~vviAtG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~  198 (233)
T d1djqa3         125 ----LGQKPMTADDV--LQYGADKVIIATGASECTLWNELKARESEWAENDIKGIYLIGDAEAPRLIADATFTGHRVARE  198 (233)
T ss_dssp             ----CSCCCCCHHHH--HTSCCSEEEECCCEECCHHHHHHHHTTHHHHHTTCCEEEECGGGTSCCCHHHHHHHHHHHHHT
T ss_pred             ----cccccccchhh--hhhccceeeeccCCCcccccccccccccccchhhhhhhhhccccCCceeEecCchHHHHHHHH
Confidence                11111111111  3568999999999976321  1110000       01110000           000000777


Q ss_pred             HhhcCCcEEEEecCCccC
Q psy14927        925 WGRLGAEVTAIEFMNAIG  942 (1074)
Q Consensus       925 l~~~G~~Vtlv~~~~~~~  942 (1074)
                      +.+.|.+||+++|++.++
T Consensus       199 l~~~g~~Vtli~r~~~~~  216 (233)
T d1djqa3         199 IEEANPQIAIPYKRETIA  216 (233)
T ss_dssp             TTSSCTTSCCCCCCCCCC
T ss_pred             HHhcCCceEEEEeccccc
Confidence            888899999999998875

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=98.71  E-value=3.8e-10  Score=122.18  Aligned_cols=114  Identities=13%  Similarity=0.212  Sum_probs=74.5

Q ss_pred             HHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcc-------c
Q psy14927        952 KQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIE-------K 1024 (1074)
Q Consensus       952 ~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~-------l 1024 (1074)
                      ..+....++.|++|++++.|++|..+++++.+++.+   +++..+++||.||+|+|......++  .....+       +
T Consensus       223 ~~~~~l~~~~g~~i~~~~~V~~I~~~~~~~~v~~~~---~~~~~~~~ad~VV~a~p~~~~~~Ll--~~~~~~~~~~~~~~  297 (347)
T d2ivda1         223 VLIDALAASLGDAAHVGARVEGLAREDGGWRLIIEE---HGRRAELSVAQVVLAAPAHATAKLL--RPLDDALAALVAGI  297 (347)
T ss_dssp             HHHHHHHHHHGGGEESSEEEEEEECC--CCEEEEEE---TTEEEEEECSEEEECSCHHHHHHHH--TTTCHHHHHHHHTC
T ss_pred             HHHHHHHHHhhcccccCCEEEEEEEeCCeEEEEEEc---CCeEEEEECCEEEECCCHHHHHHhc--cCCCHHHHHHhhcc
Confidence            334444556689999999999999877777777666   4556789999999999854322221  111111       0


Q ss_pred             CCCCCe---eeCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHhh
Q psy14927       1025 DEKGRV---PVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1025 d~~G~I---~Vd~~~~ts~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                      ...|..   ...+...++.|+||++||..++. ....|+.+|..+|..|+
T Consensus       298 ~~~~~~~~~~~~~~~~~~~p~~~~~G~~~~g~-~~~~~~~~g~~~a~~~~  346 (347)
T d2ivda1         298 YNLGHLERVAAIDAALQRLPGLHLIGNAYKGV-GLNDCIRNAAQLADALV  346 (347)
T ss_dssp             CBTTHHHHHHHHHHHHHTSTTEEECSTTTSCC-SHHHHHHHHHHHHHHHC
T ss_pred             eecCcccceecccccccCCCCEEEecccccCC-CHHHHHHHHHHHHHHhh
Confidence            111111   11112236899999999988765 46779999999999886

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=98.70  E-value=1.3e-08  Score=101.25  Aligned_cols=141  Identities=21%  Similarity=0.217  Sum_probs=91.3

Q ss_pred             hhHHhhcC--CcEEEEecCCccCCCCCCHHHHHH---------HHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccC
Q psy14927        922 GSVWGRLG--AEVTAIEFMNAIGGMGIDGEVAKQ---------FQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKD  990 (1074)
Q Consensus       922 A~~l~~~G--~~Vtlv~~~~~~~~~~~~~~~~~~---------~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~  990 (1074)
                      |..|++.+  .+||++++.+.+..+...+.....         ....+...+|.+..+. +..+.....  .+.+.    
T Consensus        18 A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~--~~~~~----   90 (186)
T d1fcda1          18 AKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDS-ATGIDPDKK--LVKTA----   90 (186)
T ss_dssp             HHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECCC-EEECCTTTT--EEEET----
T ss_pred             HHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccceeEeeee-eEeeeeccc--eeecc----
Confidence            56667766  489999998876632222211111         1234456678877653 333333222  23332    


Q ss_pred             CCCceEEEcCEEEEccCCcccCCccCcccc------CcccCCCCCeeeCC-CCC-CCCCCEEEecccCCC---CCcHHHH
Q psy14927        991 PTKKEELSCDALLVCVGRRPYTHNLGLEEI------GIEKDEKGRVPVNS-RFQ-TVIPNIFAIGDCIHG---PMLAHKA 1059 (1074)
Q Consensus       991 ~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~------gl~ld~~G~I~Vd~-~~~-ts~~~IyAiGD~~~~---~~~~~~A 1059 (1074)
                        .++++++|.+|+|+|.+|++.++.....      ++.. ..+++.+++ .++ ++.|+||++||++..   |..+..|
T Consensus        91 --~~~~i~~D~li~atG~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~iGd~~~~~~~p~~~~~A  167 (186)
T d1fcda1          91 --GGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQIAGLTN-DAGWCPVDIKTFESSIHKGIHVIGDASIANPMPKSGYSA  167 (186)
T ss_dssp             --TSCEEECSEEEECCCEEECCTTSTEEECHHHHHHTCCC-TTSSEEBCSSSCBBSSSTTEEECTTSEECTTCCSSHHHH
T ss_pred             --cceeeccceEEEEeccccchhhhhhhhhhheeccCccc-ccccccceeeeeecccccCceEeccccccCCCCchHhHH
Confidence              2578999999999999999887532211      2222 345565654 344 789999999999865   5679999


Q ss_pred             HHHHHHHHHHhhC
Q psy14927       1060 EDEGIVCVEGIAG 1072 (1074)
Q Consensus      1060 ~~~G~~aA~~I~~ 1072 (1074)
                      ..||+.+|+||..
T Consensus       168 ~~q~~~~A~ni~~  180 (186)
T d1fcda1         168 NSQGKVAAAAVVV  180 (186)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999873

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.66  E-value=4.6e-08  Score=90.82  Aligned_cols=78  Identities=19%  Similarity=0.342  Sum_probs=66.9

Q ss_pred             hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCE
Q psy14927        922 GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDA 1001 (1074)
Q Consensus       922 A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~ 1001 (1074)
                      |..|+++|++||++++.++++++.+++++.+.+.+.|+++||++++++.++++++++....+ +.+      +++++||+
T Consensus        46 A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v-~~d------g~~i~~D~  118 (123)
T d1nhpa2          46 AEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGRVQKV-VTD------KNAYDADL  118 (123)
T ss_dssp             HHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECSSBCCEE-EES------SCEEECSE
T ss_pred             HHHhhccceEEEEEEecCcccccccchhhHHHHHHHhhcCCeEEEeCceEEEEEcCCCEEEE-EeC------CCEEECCE
Confidence            88899999999999999999856789999999999999999999999999999875432233 444      45799999


Q ss_pred             EEEcc
Q psy14927       1002 LLVCV 1006 (1074)
Q Consensus      1002 vi~a~ 1006 (1074)
                      ||+|+
T Consensus       119 vi~aI  123 (123)
T d1nhpa2         119 VVVAV  123 (123)
T ss_dssp             EEECS
T ss_pred             EEEEC
Confidence            99985

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.66  E-value=6.6e-08  Score=96.38  Aligned_cols=145  Identities=14%  Similarity=0.137  Sum_probs=106.1

Q ss_pred             hhHHhhcCCcEEEEecCCc--cC-----------CCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeec
Q psy14927        922 GSVWGRLGAEVTAIEFMNA--IG-----------GMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENV  988 (1074)
Q Consensus       922 A~~l~~~G~~Vtlv~~~~~--~~-----------~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~  988 (1074)
                      |..+++.|.+|++++++..  +.           .....+.+...+....++.++++.....+..+............. 
T Consensus        17 Ai~aar~G~~v~iie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   95 (184)
T d1fl2a1          17 AIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIE-   95 (184)
T ss_dssp             HHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEE-
T ss_pred             HHHHHHcCCeEEEEEEecCCcccccccceeccccchhhhHHHHHHHHHHhhheeceeeccceeeeecccccccceeeee-
Confidence            6677889999999986421  10           011236666777777888899999888888776543221111111 


Q ss_pred             cCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCC-CcHHHHHHHHHHHH
Q psy14927        989 KDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGP-MLAHKAEDEGIVCV 1067 (1074)
Q Consensus       989 ~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~-~~~~~A~~~G~~aA 1067 (1074)
                        .....++.++.++.++|..++...  ....++.....|.|.||..++|+.||||++|||...+ +....|+.+|..+|
T Consensus        96 --~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~g~i~v~~~~~t~~~gv~a~gd~~~~~~~~~vva~g~G~~aA  171 (184)
T d1fl2a1          96 --TASGAVLKARSIIVATGAKLPNTN--WLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYKQIIIATGEGAKAS  171 (184)
T ss_dssp             --ETTSCEEEEEEEEECCCEEEESCG--GGTTTSCBCTTSCBCCCTTCBCSSTTEEECSTTBSCSSCCHHHHHHHHHHHH
T ss_pred             --eecceeeecccccccccccccccc--cccccccccccceeccCCceeeeCCCEEEEeeecCcccCCcEEEEECcHHHH
Confidence              122467999999999998877665  4556677788899999999999999999999999865 46888999999888


Q ss_pred             HHhh
Q psy14927       1068 EGIA 1071 (1074)
Q Consensus      1068 ~~I~ 1071 (1074)
                      .++.
T Consensus       172 ~~~~  175 (184)
T d1fl2a1         172 LSAF  175 (184)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.66  E-value=5.9e-08  Score=89.87  Aligned_cols=82  Identities=17%  Similarity=0.280  Sum_probs=70.9

Q ss_pred             hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeE--EEEEeeccCCCCceEEEc
Q psy14927        922 GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNI--TVTIENVKDPTKKEELSC  999 (1074)
Q Consensus       922 A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~--~v~~~~~~~~g~~~~i~~  999 (1074)
                      |..|+++|.+||++++++.++ +.+++++++.+.+.+++.||++++++.+++++.++++.  .+....   .+.++++++
T Consensus        38 A~~l~~~g~~vt~i~~~~~~l-~~~d~~~~~~~~~~l~~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~---~~~~~~i~~  113 (121)
T d1mo9a2          38 GCFFNATGRRTVMLVRTEPLK-LIKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMT---PNGEMRIET  113 (121)
T ss_dssp             HHHHHHTTCEEEEECSSCTTT-TCCSHHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEE---TTEEEEEEC
T ss_pred             HHHHHhcchhheEeeccchhh-cccccchhhhhhhhhhccccEEEcCCEEEEEEecCCceEEEEEEEe---CCCCEEEEc
Confidence            888999999999999999999 89999999999999999999999999999999876552  222222   345678999


Q ss_pred             CEEEEccC
Q psy14927       1000 DALLVCVG 1007 (1074)
Q Consensus      1000 D~vi~a~G 1007 (1074)
                      |.||+|+|
T Consensus       114 D~Vi~a~G  121 (121)
T d1mo9a2         114 DFVFLGLG  121 (121)
T ss_dssp             SCEEECCC
T ss_pred             CEEEEEEC
Confidence            99999998

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=98.65  E-value=1e-08  Score=107.98  Aligned_cols=117  Identities=17%  Similarity=0.233  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEE-EEEeeccCCCCceEEEcCEEEEccCCcccCCc--------cCcc
Q psy14927        948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNIT-VTIENVKDPTKKEELSCDALLVCVGRRPYTHN--------LGLE 1018 (1074)
Q Consensus       948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~-v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~--------l~l~ 1018 (1074)
                      ..+.+.+.+.+++.||+++++++|+.|..+++.+. |.+++      ++.+.+|.||+|+|.......        + ++
T Consensus       110 ~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~------g~~i~a~~vI~AtGg~S~p~~Gs~g~g~~~-a~  182 (251)
T d2i0za1         110 QSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQT------GEVLETNHVVIAVGGKSVPQTGSTGDGYAW-AE  182 (251)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETT------CCEEECSCEEECCCCSSSGGGSCSSHHHHH-HH
T ss_pred             HHHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeCC------CCeEecCeEEEccCCccccccCCCcccchh-cc
Confidence            55677788889999999999999999987766543 54443      458999999999996532221        0 23


Q ss_pred             ccCcccCCC--CCeee---C-CCC-CCCCCCEEEecccCCC-----CCcHHHHHHHHHHHHHHhh
Q psy14927       1019 EIGIEKDEK--GRVPV---N-SRF-QTVIPNIFAIGDCIHG-----PMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1019 ~~gl~ld~~--G~I~V---d-~~~-~ts~~~IyAiGD~~~~-----~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                      ..++++++.  +.+.+   + ..+ .+..||+|++|++...     ......|...|+.++..+.
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~l~~~~~~gG~~~~~a~~~G~~a~~~~~  247 (251)
T d2i0za1         183 KAGHTITELFGGGVSVKEINPKEMSSKFTNGLYFCGEVLDIHGYTGGYNITSALVTGRIAGTTAG  247 (251)
T ss_dssp             HTTCCEEEEEEEEECGGGEETTTTEESSSBTEEECGGGBSCBCCTTTHHHHHHHHHHHHHHHHHH
T ss_pred             cceeeeeeeeecccCccccCchhHHHhcCCCcEeeeeEEEccCCcchHHHHHHHHHHHHHHHHHH
Confidence            333333211  11111   1 122 2578999999998742     2246788999999998774

>d1xdia2 d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.64  E-value=3.6e-09  Score=97.31  Aligned_cols=64  Identities=22%  Similarity=0.313  Sum_probs=61.1

Q ss_pred             eccchhhccHHHH-hccccccccccccccccccccccCCcceEEEEeccCCCcccccccccCCCc
Q psy14927        391 PVEKWTLLSLARV-LEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPGIE  454 (1074)
Q Consensus       391 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~  454 (1074)
                      |.+|+|||||++| ++|++|+++++||..++|+.+.+.+.|++|++.+++|+++||.|+.+.+..
T Consensus        12 PeiA~vGlte~~a~~~g~~~~~~~~~~~~~~ra~~~~~~~G~vKlv~d~~~~~ilGa~ivG~~A~   76 (118)
T d1xdia2          12 PEIAAVGVPQSVIDAGSVAARTIMLPLRTNARAKMSEMRHGFVKIFCRRSTGVVIGGVVVAPIAS   76 (118)
T ss_dssp             SEEEEEESCHHHHHHTSSCEEEEEEESTTSHHHHHTTCSSCEEEEEEETTTCBEEEEEEEETTHH
T ss_pred             ChheeehhhHHHHHhCcccceeeeecccchhhhhhcccchhheEEEEecCCCceEEEEEEcCcHH
Confidence            8999999999999 899999999999999999999999999999999999999999999987643

>d1lvla3 d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.62  E-value=4.5e-09  Score=97.47  Aligned_cols=66  Identities=27%  Similarity=0.429  Sum_probs=61.9

Q ss_pred             EeccchhhccHHHH-hccccccccccccccccccccccCCcceEEEEeccCCCcccccccccCCCcE
Q psy14927        390 LPVEKWTLLSLARV-LEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPGIEY  455 (1074)
Q Consensus       390 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~  455 (1074)
                      -|..|+|||||+|| ++|++++++++||..++|++..+.+.||+|++.+++|+++||.|+.+.+..-
T Consensus        11 ~PeiA~VGlte~eA~~~g~~~~v~~~~~~~~~ra~~~~~~~g~vklv~d~~t~~ILG~~ivG~~A~e   77 (123)
T d1lvla3          11 DPEVVVVGKTPEQASQQGLDCIVAQFPFAANGRAMSLESKSGFVRVVARRDNHLILGWQAVGVAVSE   77 (123)
T ss_dssp             SSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTGGG
T ss_pred             CCccEEEECCHHHHhhcchhhhcceeeccccccceecCcchhheeeeeecccccceEEEEEeCchhh
Confidence            38999999999999 8899999999999999999999999999999999999999999999877543

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.61  E-value=1.7e-08  Score=105.68  Aligned_cols=112  Identities=24%  Similarity=0.450  Sum_probs=83.1

Q ss_pred             EEEEeCCChhHHHHHHHHHHHcC-CCHHHHhhhcccCCccccccccccCCcccccCCCchHHHhhcchhhHHhccCcccc
Q psy14927        491 GVHIIGPAAGELINEAVLAMEYG-ASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKA  569 (1074)
Q Consensus       491 G~~iiG~~a~eli~~~a~a~~~~-~~~~~l~~~~~~hPt~s~e~~~~~ggtc~n~GCvpkk~l~~aa~~~~~~~~~~a~~  569 (1074)
                      .+.|||.+.+.+...+..| +.| .++.-+....+..|.    ....+||||+|.||+|+|+|++++++.+..+.  ++.
T Consensus         5 DvvVIG~GpAG~~aAi~aa-~~g~k~V~vie~~~~~~~~----~~~~iGGtc~~~gcip~K~l~~~a~~~~~~~~--~~~   77 (240)
T d1feca1           5 DLVVIGAGSGGLEAGWNAA-SLHKKRVAVIDLQKHHGPP----HYAALGGTCVNVGCVPKKLMVTGANYMDTIRE--SAG   77 (240)
T ss_dssp             EEEEECCSHHHHHHHHHHH-HHHCCCEEEEESCSSSBTT----TBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHH--GGG
T ss_pred             CEEEECCCHHHHHHHHHHH-HcCCCEEEEEEEeccCCcc----cccccccccccccchhhhhccccccccccccc--ccc
Confidence            4778999999888544333 555 344222111111111    12458999999999999999999999988764  789


Q ss_pred             CCeeccC--cccCHHHHHHHHHHHHHHHHHHHHHHhhhCc-cc
Q psy14927        570 RGIEVEG--VKLNLETMMGTKSAAVKALTGGIAHLFKSNK-AL  609 (1074)
Q Consensus       570 ~G~~~~~--~~~~w~~~~~~~~~~i~~l~~~~~~~l~~~~-i~  609 (1074)
                      |||.+..  ..+||+.+++++++.|..++.+++.+|.++. ++
T Consensus        78 ~Gi~~~~~~v~~d~~~l~~~k~~~v~~~~~~~~~~l~~~~~v~  120 (240)
T d1feca1          78 FGWELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLT  120 (240)
T ss_dssp             GTEECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEE
T ss_pred             ccccccccccccCHHHHHHHhhcEEeccccceeeeeccCCcEE
Confidence            9998763  5789999999999999999999999887654 66

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.60  E-value=5.4e-08  Score=91.62  Aligned_cols=80  Identities=19%  Similarity=0.263  Sum_probs=68.7

Q ss_pred             hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe---EEEEEeeccCCCCceEEE
Q psy14927        922 GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN---ITVTIENVKDPTKKEELS  998 (1074)
Q Consensus       922 A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~---~~v~~~~~~~~g~~~~i~  998 (1074)
                      |..|++.|.+||++++.+++++..+++.+.+.+.+.++++||++++++.+++++...+.   ..+.+.+      +++++
T Consensus        51 A~~l~~~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~------G~~i~  124 (133)
T d1q1ra2          51 AATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCED------GTRLP  124 (133)
T ss_dssp             HHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETT------SCEEE
T ss_pred             HHHHHhhCcceeeeeecccccccccchhhhhhhhhcccccccEEEeCCeEEEEEEeCCCceEEEEECCC------CCEEE
Confidence            88899999999999999999855689999999999999999999999999999875433   2344443      56899


Q ss_pred             cCEEEEccC
Q psy14927        999 CDALLVCVG 1007 (1074)
Q Consensus       999 ~D~vi~a~G 1007 (1074)
                      +|+||+|+|
T Consensus       125 ~D~vi~a~G  133 (133)
T d1q1ra2         125 ADLVIAGIG  133 (133)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEEeeC
Confidence            999999998

>d1ebda3 d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.58  E-value=6.5e-09  Score=95.20  Aligned_cols=65  Identities=40%  Similarity=0.524  Sum_probs=61.6

Q ss_pred             EeccchhhccHHHH-hccccccccccccccccccccccCCcceEEEEeccCCCcccccccccCCCc
Q psy14927        390 LPVEKWTLLSLARV-LEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPGIE  454 (1074)
Q Consensus       390 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~  454 (1074)
                      -|.+|+|||||++| ++|++|+++.+||..++|++..++..|++|++.+++|+++||.|+.+.+..
T Consensus         9 ~PeiA~VGlte~ea~~~g~~~~v~~~~~~~~~ra~~~~~~~G~vKli~~~~~~~iLG~~ivg~~A~   74 (115)
T d1ebda3           9 DPECASVGYFEQQAKDEGIDVIAAKFPFAANGRALALNDTDGFLKLVVRKEDGVIIGAQIIGPNAS   74 (115)
T ss_dssp             SSCEEEEECCHHHHHTTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEESTTHH
T ss_pred             CCceEEEeCCHHHHhhhhhhhhccceecccceeeeecCCCcEEEEEEEeCCcceEEEEEEEcCCHH
Confidence            49999999999999 889999999999999999999999999999999999999999999987743

>d1dxla3 d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.57  E-value=7e-09  Score=96.19  Aligned_cols=67  Identities=45%  Similarity=0.733  Sum_probs=62.8

Q ss_pred             eE-EeccchhhccHHHH-hccccccccccccccccccccccCCcceEEEEeccCCCcccccccccCCCc
Q psy14927        388 II-LPVEKWTLLSLARV-LEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPGIE  454 (1074)
Q Consensus       388 ~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~  454 (1074)
                      || -|.+|+|||||+|| ++|++++++++||..++|+...+.+.||+|++.+++|+++||.|+.+.+..
T Consensus         8 vft~PeiA~vGlte~~A~~~g~~~~~~~~~~~~~~ra~~~~~~~G~~Klv~d~~~~~ilG~~ivG~~A~   76 (123)
T d1dxla3           8 VYTNPEVASVGKTEEQVKETGVEYRVGKFPFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIMAPNAG   76 (123)
T ss_dssp             ECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHHSCCCCEEEEEEETTTCBEEEEEEEETTHH
T ss_pred             eecCCceEEEECCHHHHHHcCCCEEEEEEeccccchhhhcCCCcceEEEEEECCCCEEEEEEEehhhHH
Confidence            44 59999999999999 889999999999999999999999999999999999999999999987643

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.56  E-value=9.1e-08  Score=88.64  Aligned_cols=74  Identities=18%  Similarity=0.260  Sum_probs=64.9

Q ss_pred             hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCE
Q psy14927        922 GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDA 1001 (1074)
Q Consensus       922 A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~ 1001 (1074)
                      |..|.++|++||++++++.++ + +++++++.+.+.|+++||++++++.+.+++++  +  + +.+      +..+++|.
T Consensus        48 A~~l~~~g~~Vtlv~~~~~l~-~-~d~~~~~~~~~~l~~~GV~~~~~~~v~~~~~~--~--v-~~~------~~~i~~D~  114 (122)
T d1xhca2          48 AGNLAEAGYHVKLIHRGAMFL-G-LDEELSNMIKDMLEETGVKFFLNSELLEANEE--G--V-LTN------SGFIEGKV  114 (122)
T ss_dssp             HHHHHHTTCEEEEECSSSCCT-T-CCHHHHHHHHHHHHHTTEEEECSCCEEEECSS--E--E-EET------TEEEECSC
T ss_pred             HHHhhcccceEEEEecccccc-C-CCHHHHHHHHHHHHHCCcEEEeCCEEEEEeCC--E--E-EeC------CCEEECCE
Confidence            888999999999999999987 4 89999999999999999999999999999763  3  2 233      46899999


Q ss_pred             EEEccCC
Q psy14927       1002 LLVCVGR 1008 (1074)
Q Consensus      1002 vi~a~G~ 1008 (1074)
                      ||+|+|.
T Consensus       115 vi~a~Gv  121 (122)
T d1xhca2         115 KICAIGI  121 (122)
T ss_dssp             EEEECCE
T ss_pred             EEEEEEe
Confidence            9999995

>d1v59a3 d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.55  E-value=9.7e-09  Score=95.20  Aligned_cols=65  Identities=55%  Similarity=0.919  Sum_probs=62.0

Q ss_pred             EeccchhhccHHHH-hccccccccccccccccccccccCCcceEEEEeccCCCcccccccccCCCc
Q psy14927        390 LPVEKWTLLSLARV-LEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPGIE  454 (1074)
Q Consensus       390 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~  454 (1074)
                      -|.+|+|||||++| ++|++++++++||..++|++..+++.||+|++.|++|+++||.|+.+.+..
T Consensus        11 ~PeiA~VGlte~eA~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~d~~~~~ilGa~ivG~~A~   76 (123)
T d1v59a3          11 HPEVAWVGKTEEQLKEAGIDYKIGKFPFAANSRAKTNQDTEGFVKILIDSKTERILGAHIIGPNAG   76 (123)
T ss_dssp             SSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHH
T ss_pred             CCccEEEECCHHHHHhcccCceEEEEecccccchhccCCCcEEEEEEEECCCCEEEEEEEEchHHH
Confidence            59999999999999 999999999999999999999999999999999999999999999987744

>d1ojta3 d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.54  E-value=1.1e-08  Score=95.48  Aligned_cols=65  Identities=26%  Similarity=0.378  Sum_probs=61.6

Q ss_pred             EeccchhhccHHHH-hccccccccccccccccccccccCCcceEEEEeccCCCcccccccccCCCc
Q psy14927        390 LPVEKWTLLSLARV-LEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPGIE  454 (1074)
Q Consensus       390 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~  454 (1074)
                      -|.+|||||||++| ++|+++.++++||..++|++..+.++||+|++.+++|+++||.|+.+.+..
T Consensus        11 ~PeiA~VGlte~~A~~~g~~~~v~~~~~~~~~ra~~~~~~~g~~Kli~d~~~g~iLGa~ivG~~A~   76 (128)
T d1ojta3          11 SPEVAWVGETELSAKASARKITKANFPWAASGRAIANGCDKPFTKLIFDAETGRIIGGGIVGPNGG   76 (128)
T ss_dssp             SSCEEEEECCHHHHHHHTCCEEEEEEEGGGCHHHHHTTCCSCEEEEEEETTTCBEEEEEEESTTHH
T ss_pred             CCceeeeeccHHHHHHcCCCcccceeeccchhhHHhcCCccceEEEEEeCCCCeEEEEEEEhhhHH
Confidence            38999999999999 889999999999999999999999999999999999999999999987744

>d3lada3 d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.53  E-value=1.1e-08  Score=95.10  Aligned_cols=66  Identities=47%  Similarity=0.684  Sum_probs=62.5

Q ss_pred             EeccchhhccHHHH-hccccccccccccccccccccccCCcceEEEEeccCCCcccccccccCCCcE
Q psy14927        390 LPVEKWTLLSLARV-LEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPGIEY  455 (1074)
Q Consensus       390 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~  455 (1074)
                      -|.+|+|||||++| ++|++++++.+||..++|+...+++.|++|++.+++|+++||.|+.+.+...
T Consensus        11 ~PeiA~VGlte~~a~~~g~~~~~~~~~~~~~~ra~~~~~~~G~vKlv~d~~t~~ILGa~ivg~~A~e   77 (124)
T d3lada3          11 HPEIAGVGKTEQALKAEGVAINVGVFPFAASGRAMAANDTAGFVKVIADAKTDRVLGVHVIGPSAAE   77 (124)
T ss_dssp             SSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTCBEEEEEEEETTHHH
T ss_pred             cCceeEeehhHHHHhhcccccEEEEEECccCcchhhcCCCCeEEEEEEECCCCEEEEEEEEcccHHH
Confidence            59999999999999 9999999999999999999999999999999999999999999999987443

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=98.49  E-value=2.4e-08  Score=99.11  Aligned_cols=100  Identities=13%  Similarity=0.138  Sum_probs=70.0

Q ss_pred             hhhhhhccccchHHHHHHHhh-------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEe
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKIT  867 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~i  867 (1074)
                      |+|||||||++|+++|.+|++       +++++.+.....+............ ..... ........+|++..++++.+
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~v~~~~~~~~~~   80 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKL-ESIKH-GYDGLRAHGIQVVHDSATGI   80 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCG-GGGEE-CSHHHHTTTEEEECCCEEEC
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhh-hhhhh-hhhhccccceeEeeeeeEee
Confidence            349999999999999999988       5777766544443333222221111 11111 22334567899999988888


Q ss_pred             cCCeEEEEeCCCCeeEEEcCeEEEccCCCCC
Q psy14927        868 GPNTVTVIKSDGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       868 d~~~~~v~~~~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      +.....+.+.++  .+++||+||+|||..|.
T Consensus        81 ~~~~~~~~~~~~--~~i~~D~li~atG~~~~  109 (186)
T d1fcda1          81 DPDKKLVKTAGG--AEFGYDRCVVAPGIELI  109 (186)
T ss_dssp             CTTTTEEEETTS--CEEECSEEEECCCEEEC
T ss_pred             eeccceeecccc--eeeccceEEEEeccccc
Confidence            887777788888  78999999999999873

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=8.8e-06  Score=88.76  Aligned_cols=92  Identities=16%  Similarity=0.157  Sum_probs=60.5

Q ss_pred             CCChhHHHHHHHHHHccCCHHHHHHHHHHH--------------HhHHHHhhcCHHHHHHHHHHHHHHHHhcCCCchHHH
Q psy14927        249 KSQPELLKSIISFYSKGKAPHLLANFYVSC--------------AQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETL  314 (1074)
Q Consensus       249 ~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~--------------a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~~  314 (1074)
                      ..+|.....+..+|...+.+.+|...+..+              +... ...|+|++|...+.++++.    ....+   
T Consensus       268 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~al~~----~p~~~---  339 (388)
T d1w3ba_         268 PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK-REQGNIEEAVRLYRKALEV----FPEFA---  339 (388)
T ss_dssp             SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HTTTCHHHHHHHHHHHTTS----CTTCH---
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHH-HHCCCHHHHHHHHHHHHHh----CCCCH---
Confidence            344666667778888888888877655443              4444 5668888888887776542    21222   


Q ss_pred             HHHHHHHHHHHHHhhcCChHHHhhHHHHHHHHHhhccCcc
Q psy14927        315 KSSVVEKLAEVEIDEFGNYEKGLGALNEAKRCLLKHNDSM  354 (1074)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  354 (1074)
                        .....+..+|.+ .|+++.|+..|.++   ++..|++.
T Consensus       340 --~~~~~la~~~~~-~g~~~~A~~~~~~a---l~l~P~~~  373 (388)
T d1w3ba_         340 --AAHSNLASVLQQ-QGKLQEALMHYKEA---IRISPTFA  373 (388)
T ss_dssp             --HHHHHHHHHHHT-TTCCHHHHHHHHHH---HTTCTTCH
T ss_pred             --HHHHHHHHHHHH-cCCHHHHHHHHHHH---HHhCCCCH
Confidence              112234566777 79999999999886   45567654

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.49  E-value=3e-08  Score=100.43  Aligned_cols=108  Identities=12%  Similarity=0.119  Sum_probs=71.2

Q ss_pred             hhhhhccccchHHHHHHHhh-------hhhhhccccccc-cchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEE
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVK-LNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKI  866 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~-~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~  866 (1074)
                      +|||||||++|+++|..|++       +++++.+..... ..++.+....-...+.+.....+.+.+.||+++.+ .|+.
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V~~   81 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEITA   81 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccccccCcchhhcccccchHHHHHhhHHHHHHCCcEEEEeeceee
Confidence            39999999999999999988       455554433211 11121111111112344444567788899999998 6888


Q ss_pred             ecCCeEEEE---eCCCCeeEEEcCeEEEccCCCCCCCCCC
Q psy14927        867 TGPNTVTVI---KSDGSTEEVKTKNILIATGSEVTPFPGI  903 (1074)
Q Consensus       867 id~~~~~v~---~~~G~~~~i~~d~lIIATG~~p~~ipgi  903 (1074)
                      ++++...|+   +.+|++.++.||.||+|||+.|..++|.
T Consensus        82 i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~~~g~  121 (198)
T d1nhpa1          82 IQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGV  121 (198)
T ss_dssp             EETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCE
T ss_pred             EeeccccceeeecccccccccccceeeEeecceeeccccc
Confidence            886544443   3567667899999999999987555443

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.48  E-value=5.8e-08  Score=89.00  Aligned_cols=87  Identities=11%  Similarity=0.106  Sum_probs=67.6

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEecC
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITGP  869 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id~  869 (1074)
                      +|+|||||+.|+.+|..+++     ++++..+.....++            .++...+.+.+.+.||+++.+ +|+.++.
T Consensus        23 ~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~~d------------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~   90 (115)
T d1lvla2          23 HLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYD------------SELTAPVAESLKKLGIALHLGHSVEGYEN   90 (115)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSC------------HHHHHHHHHHHHHHTCEEETTCEEEEEET
T ss_pred             eEEEECCCHHHHHHHHHHhhcccceEEEeeecccccccc------------chhHHHHHHHHHhhcceEEcCcEEEEEcC
Confidence            49999999999999999998     67777665532221            234445677788889999999 5888887


Q ss_pred             CeEEEEeCCCCeeEEEcCeEEEccC
Q psy14927        870 NTVTVIKSDGSTEEVKTKNILIATG  894 (1074)
Q Consensus       870 ~~~~v~~~~G~~~~i~~d~lIIATG  894 (1074)
                      ....+...+|+..++.+|.||+|||
T Consensus        91 ~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          91 GCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             TEEEEECSSSCCCEECCSCEEECCC
T ss_pred             CeEEEEEcCCCeEEEEcCEEEEecC
Confidence            7666666666557899999999998

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.45  E-value=7.9e-08  Score=88.19  Aligned_cols=85  Identities=12%  Similarity=0.093  Sum_probs=66.1

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEecC
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITGP  869 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id~  869 (1074)
                      +|+|||||+.|+.+|..+++     ++++..+.....++            .++...+.+.+++.||+++++ .++.+..
T Consensus        23 ~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~~d------------~~~~~~~~~~l~~~GV~~~~~~~v~~i~~   90 (116)
T d1gesa2          23 RVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFD------------PMISETLVEVMNAEGPQLHTNAIPKAVVK   90 (116)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSC------------HHHHHHHHHHHHHHSCEEECSCCEEEEEE
T ss_pred             EEEEECCChhhHHHHHHhhccccEEEEEeecchhhhhcc------------hhhHHHHHHHHHHCCCEEEeCCEEEEEEE
Confidence            49999999999999999998     77777666543321            234455677788889999999 4655542


Q ss_pred             ---CeEEEEeCCCCeeEEEcCeEEEccC
Q psy14927        870 ---NTVTVIKSDGSTEEVKTKNILIATG  894 (1074)
Q Consensus       870 ---~~~~v~~~~G~~~~i~~d~lIIATG  894 (1074)
                         ..+.+.+++|  +++.+|.||+|||
T Consensus        91 ~~~~~~~v~~~~g--~~~~~D~vi~a~G  116 (116)
T d1gesa2          91 NTDGSLTLELEDG--RSETVDCLIWAIG  116 (116)
T ss_dssp             CTTSCEEEEETTS--CEEEESEEEECSC
T ss_pred             cCCcEEEEEECCC--CEEEcCEEEEecC
Confidence               3577888998  6899999999998

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.43  E-value=1e-08  Score=106.69  Aligned_cols=92  Identities=9%  Similarity=0.012  Sum_probs=65.1

Q ss_pred             hhhhhccccchHHHHHHHhh-------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEec
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITG  868 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id  868 (1074)
                      +|+|||||||||+||.+|++       ++||+.+.+|+.+.+...+....  ...+.......+...|++++.++....|
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~   80 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPE--VKNVINTFTQTARSDRCAFYGNVEVGRD   80 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGG--GGGHHHHHHHHHTSTTEEEEBSCCBTTT
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehhhccccccc--cccchhhhhhhhhcCCeeEEeeEEeCcc
Confidence            39999999999999999976       78999999998876654333322  2455555677788889999988432111


Q ss_pred             CCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        869 PNTVTVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       869 ~~~~~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                      .....        ..-.||.|+||||+.+
T Consensus        81 ~~~~~--------l~~~~d~v~~a~Ga~~  101 (230)
T d1cjca2          81 VTVQE--------LQDAYHAVVLSYGAED  101 (230)
T ss_dssp             BCHHH--------HHHHSSEEEECCCCCE
T ss_pred             ccHHH--------HHhhhceEEEEeeccc
Confidence            11000        0125999999999975

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.43  E-value=7.1e-08  Score=100.31  Aligned_cols=112  Identities=27%  Similarity=0.392  Sum_probs=89.8

Q ss_pred             EEEEeCCChhHHHHHHHHHHHcCCCHHHHhhhcccCCccccccccccCCcccccCCCchHHHhhcchhhHHhccCccccC
Q psy14927        491 GVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKAR  570 (1074)
Q Consensus       491 G~~iiG~~a~eli~~~a~a~~~~~~~~~l~~~~~~hPt~s~e~~~~~ggtc~n~GCvpkk~l~~aa~~~~~~~~~~a~~~  570 (1074)
                      .+.|||.+++.+. .+..+.+.|+++.-+..... .|.   ...+.+||+|+|+||+|+|.|.+++++.+....  ...+
T Consensus         5 DviVIG~GpaGl~-aA~~aa~~G~kV~viE~~~~-~~~---~~~~~~GG~c~~~g~~~~k~l~~~~~~~~~~~~--~~~~   77 (235)
T d1h6va1           5 DLIIIGGGSGGLA-AAKEAAKFDKKVMVLDFVTP-TPL---GTNWGLGGTCVNVGCIPKKLMHQAALLGQALKD--SRNY   77 (235)
T ss_dssp             EEEEECCSHHHHH-HHHHHGGGCCCEEEECCCCC-CTT---CCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHH--TTTT
T ss_pred             CEEEECCCHHHHH-HHHHHHHCCCeEEEEeccCC-CCc---ccccccccccccccccchhhhhhhhhhhhHhhh--hhcc
Confidence            4778999999987 45555588887654432221 111   113578999999999999999999988887654  6789


Q ss_pred             CeeccC-cccCHHHHHHHHHHHHHHHHHHHHHHhhhCccc
Q psy14927        571 GIEVEG-VKLNLETMMGTKSAAVKALTGGIAHLFKSNKAL  609 (1074)
Q Consensus       571 G~~~~~-~~~~w~~~~~~~~~~i~~l~~~~~~~l~~~~i~  609 (1074)
                      |+.... +.+||..++++++..|..++.++..+|++++|+
T Consensus        78 gi~~~~~~~~d~~~~~~~~~~~i~~l~~g~~~~l~~~~V~  117 (235)
T d1h6va1          78 GWKLEDTVKHDWEKMTESVQNHIGSLNWGYRVALREKKVV  117 (235)
T ss_dssp             TBCCCSCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCE
T ss_pred             ccccccceeechhhhhheeeeeeeeccchhhhhhhccCce
Confidence            998765 789999999999999999999999999999999

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.42  E-value=9.9e-09  Score=108.39  Aligned_cols=108  Identities=18%  Similarity=0.161  Sum_probs=72.6

Q ss_pred             HhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCcc-Cc-cccC----cccCCCCCeee
Q psy14927        959 GKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNL-GL-EEIG----IEKDEKGRVPV 1032 (1074)
Q Consensus       959 ~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l-~l-~~~g----l~ld~~G~I~V 1032 (1074)
                      +..+..+..++.+..+...++.+.|++.+      ++.+.+|.++++++..+....+ .+ ..+.    ..++..++..+
T Consensus       221 ~~~~~~i~~~~~v~~i~~~~~~v~v~~~~------g~~~~~d~~~~~~~~~~l~~~~~~~~p~l~~~~~~ai~~~~~~~~  294 (347)
T d1b5qa1         221 KIVDPRLQLNKVVREIKYSPGGVTVKTED------NSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFWPVGV  294 (347)
T ss_dssp             CBCCTTEESSCCEEEEEECSSCEEEEETT------SCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSCBTTC
T ss_pred             hhcccccccccccccccccCccEEEEECC------CCEEEcCEEEeecCHHHHhhcccccCCCCCHHHHHHHHhcCCccc
Confidence            45578899999999999887777777654      5689999999987643321110 00 0000    00122333333


Q ss_pred             C----CCCCCCCCCEEEecccCCC--CCcHHHHHHHHHHHHHHhhC
Q psy14927       1033 N----SRFQTVIPNIFAIGDCIHG--PMLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus      1033 d----~~~~ts~~~IyAiGD~~~~--~~~~~~A~~~G~~aA~~I~~ 1072 (1074)
                      +    +.++++.++||++||+++.  |..++.|+.+|..+|..|++
T Consensus       295 ~~~~~~~~~~~~~~v~~~GD~~~~~~~~~~~gA~~sG~~aA~~l~~  340 (347)
T d1b5qa1         295 NRYEYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILIN  340 (347)
T ss_dssp             CHHHHHHHHCCBTTEEECSGGGCSSCTTSHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhcccccCCEEEEEccccCcCCCHHHHHHHHHHHHHHHHHH
Confidence            3    3345788999999999874  56788899999999999874

>d3grsa3 d.87.1.1 (A:364-478) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=4.3e-08  Score=89.55  Aligned_cols=65  Identities=22%  Similarity=0.203  Sum_probs=59.5

Q ss_pred             EeccchhhccHHHH-hc--cccccccccccccccccccccCCcceEEEEeccCCCcccccccccCCCc
Q psy14927        390 LPVEKWTLLSLARV-LE--GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPGIE  454 (1074)
Q Consensus       390 ~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~  454 (1074)
                      -|.+|||||||+|| ++  +..+++..+||..++|+...++.+|++|++.++.|+++||.|+.+.+..
T Consensus        11 ~PeiA~VGltE~eA~~~~~~~~v~~~~~~~~~~~~a~~~~~~~g~~k~i~~~~~~~ilG~~ivG~~A~   78 (115)
T d3grsa3          11 HPPIGTVGLTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCD   78 (115)
T ss_dssp             SSCEEEEECCHHHHHHHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHH
T ss_pred             cCccEEEecCcHHHHHHhCCcccceeEeeeeecchhhcccccceeEEEEEecCCceEEEEEEeccCHH
Confidence            38999999999999 44  5679999999999999999999999999999999999999999987744

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.41  E-value=1.4e-07  Score=87.13  Aligned_cols=85  Identities=14%  Similarity=0.101  Sum_probs=64.2

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEec
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITG  868 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id  868 (1074)
                      ++|+|||||+.|+.+|..+++     ++++..+......           ....+...+.+.+++.||+++.+ .++.+.
T Consensus        31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~-----------~~~~~~~~~~~~l~~~GV~i~~~~~v~~~~   99 (121)
T d1d7ya2          31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRA-----------APATLADFVARYHAAQGVDLRFERSVTGSV   99 (121)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT-----------SCHHHHHHHHHHHHTTTCEEEESCCEEEEE
T ss_pred             CeEEEECcchhHHHHHHHhhcccceEEEEeecccccccc-----------CCHHHHHHHHHHHHHCCcEEEeCCEEEEEe
Confidence            349999999999999999998     6666655432111           11334445677888999999999 577776


Q ss_pred             CCeEEEEeCCCCeeEEEcCeEEEccC
Q psy14927        869 PNTVTVIKSDGSTEEVKTKNILIATG  894 (1074)
Q Consensus       869 ~~~~~v~~~~G~~~~i~~d~lIIATG  894 (1074)
                      ...  ++++||  .++.+|.||+|+|
T Consensus       100 ~~~--v~l~dg--~~i~~D~vi~a~G  121 (121)
T d1d7ya2         100 DGV--VLLDDG--TRIAADMVVVGIG  121 (121)
T ss_dssp             TTE--EEETTS--CEEECSEEEECSC
T ss_pred             CCE--EEECCC--CEEECCEEEEeeC
Confidence            653  567888  6899999999998

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.40  E-value=5.2e-08  Score=97.29  Aligned_cols=102  Identities=17%  Similarity=0.097  Sum_probs=67.4

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEe
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKIT  867 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~i  867 (1074)
                      |.+|||||||++|+.+|..|++     +++...+.....++.+.+....... ..............+|+++.| .++.+
T Consensus         3 ~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~v~~i   81 (183)
T d1d7ya1           3 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAH-GDAEKIRLDCKRAPEVEWLLGVTAQSF   81 (183)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHH-CCGGGSBCCGGGSTTCEEEETCCEEEE
T ss_pred             CCCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhhhhhh-hhhhhHHHHHhhcCCeEEEEecccccc
Confidence            3349999999999999999988     3333333333333333222211111 011111123344569999999 68888


Q ss_pred             cCCeEEEEeCCCCeeEEEcCeEEEccCCCCC
Q psy14927        868 GPNTVTVIKSDGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       868 d~~~~~v~~~~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      ++....+++++|  +++.||.||+|||..|.
T Consensus        82 ~~~~~~~~~~~g--~~~~~D~vi~a~G~~p~  110 (183)
T d1d7ya1          82 DPQAHTVALSDG--RTLPYGTLVLATGAAPR  110 (183)
T ss_dssp             ETTTTEEEETTS--CEEECSEEEECCCEEEC
T ss_pred             ccccceeEecCC--cEeeeeeEEEEEEEEcc
Confidence            887778888998  78999999999999874

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=98.40  E-value=3.2e-07  Score=100.13  Aligned_cols=122  Identities=19%  Similarity=0.234  Sum_probs=75.2

Q ss_pred             CHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe--EEEEEeeccCCCCceEEEcCEEEEccCCcc-cC----------C
Q psy14927        947 DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN--ITVTIENVKDPTKKEELSCDALLVCVGRRP-YT----------H 1013 (1074)
Q Consensus       947 ~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p-~~----------~ 1013 (1074)
                      ...+...+.+.+.+.|+++++++.++++..++++  +.|...+..  +....+.++.||+|+|--. |.          .
T Consensus       151 ~~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~~G~V~Gv~~~~~~--~~~~~i~Ak~VIlAtGG~~~n~~~~~~~~~~~~  228 (322)
T d1d4ca2         151 GAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEY--TGYYVIKADAVVIAAGGFAKNNERVSKYDPKLK  228 (322)
T ss_dssp             HHHHHHHHHHHHHHTTCEEETTEEEEEEECCSSSCCCEEEEEETT--TEEEEEECSEEEECCCCCTTCHHHHHHHCGGGT
T ss_pred             hHHHHHHHHHHHHhcCceEEEeeecccccccccccccceEEEeec--ccEEEEeCCeEEEcCCCcccCHHHHHhhCcccc
Confidence            4566777778888899999999999998765443  445555532  3346799999999998211 11          0


Q ss_pred             cc------------------------CccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCC----CC----cHHHHHH
Q psy14927       1014 NL------------------------GLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHG----PM----LAHKAED 1061 (1074)
Q Consensus      1014 ~l------------------------~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~----~~----~~~~A~~ 1061 (1074)
                      .+                        ..+..++.+|..+.+. ++...|.+||+||+|+|+.+    ..    ....+.-
T Consensus       229 ~~~~~~~~~~tGdg~~~a~~aGa~~~~~e~~~~~~~~~~~~~-~~~~~~~v~Glya~Ge~~~gvhG~nrlg~~~~~e~~v  307 (322)
T d1d4ca2         229 GFKATNHPGATGDGLDVALQAGAATRDLEMGGLVIDTKAEVK-SEKTGKPITGLYAAGEVTGGVHGANRLGGNAISDIVT  307 (322)
T ss_dssp             TCCBCSCTTCSSHHHHHHHHTTBCEECTTCCEECCCTTCEEE-BTTTSSEEEEEEECGGGBCSSSTTSCCTTHHHHHHHH
T ss_pred             cccccCCCCccCHHHHHHHHcCCcceecccceEEecCceEEE-ECCCCCEeCceEEchhhcCCccccccchhhHHHHHHH
Confidence            00                        0111122333344443 33345789999999999752    11    2344445


Q ss_pred             HHHHHHHHhh
Q psy14927       1062 EGIVCVEGIA 1071 (1074)
Q Consensus      1062 ~G~~aA~~I~ 1071 (1074)
                      -|++|+.+++
T Consensus       308 ~g~~ag~~aa  317 (322)
T d1d4ca2         308 YGRIAGASAA  317 (322)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5777777654

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=5.4e-08  Score=99.76  Aligned_cols=105  Identities=16%  Similarity=0.100  Sum_probs=66.8

Q ss_pred             chhhhhhccccchHHHHHHHhh-------hhhhhccccccc-cchhhhh-hhh----------------------hHHHh
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVK-LNLETMM-GTK----------------------SAAVK  842 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~-~~~~~~~-~~~----------------------~~~~~  842 (1074)
                      +..+||||||++|+.+|..|++       +++++.+..... +.+.... ...                      ....-
T Consensus         4 ~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (213)
T d1m6ia1           4 HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSF   83 (213)
T ss_dssp             EEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGGG
T ss_pred             CCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhcccchhhhhcCChhh
Confidence            4458999999999999999987       345443322110 0000000 000                      00000


Q ss_pred             hhhhhHHHHhhhCCeEEEee-eEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCC
Q psy14927        843 ALTGGIAHLFKSNKVTQLNG-HGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPF  900 (1074)
Q Consensus       843 ~l~~~~~~~l~~~gV~~~~g-~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~i  900 (1074)
                      .........+++.||+++.| +|+.+|.+..+|++++|  +++.||.||||||+.|+.+
T Consensus        84 ~~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~V~l~dG--~~i~~d~lViAtG~~~~~~  140 (213)
T d1m6ia1          84 YVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDG--SQITYEKCLIATGGTEPNV  140 (213)
T ss_dssp             SBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTS--CEEEEEEEEECCCEEEECC
T ss_pred             hhhhhhHHHHHHCCeEEEeCCEEEEeeccCceeeeccc--eeeccceEEEeeeeecchh
Confidence            01111233456789999999 59999988888999999  7899999999999987543

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=7.2e-08  Score=106.36  Aligned_cols=113  Identities=15%  Similarity=0.095  Sum_probs=69.8

Q ss_pred             HHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccC---c----cccCcccC
Q psy14927        953 QFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLG---L----EEIGIEKD 1025 (1074)
Q Consensus       953 ~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~---l----~~~gl~ld 1025 (1074)
                      .....+++.|+++++++.|.+|..+++++.|++.+      +.++.+|.||++++..--.....   +    ....-...
T Consensus       212 ~~~~l~~~~g~~i~~~~~v~~I~~~~~~v~v~~~~------g~~~~ad~vI~a~p~~~~~~~~~~p~l~~~~~~~~~~~~  285 (383)
T d2v5za1         212 VSERIMDLLGDRVKLERPVIYIDQTRENVLVETLN------HEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVF  285 (383)
T ss_dssp             HHHHHHHHHGGGEEESCCEEEEECSSSSEEEEETT------SCEEEESEEEECSCGGGGGGSEEESCCCHHHHHHTTSCC
T ss_pred             HHHHHHHHcCCeEEecCcceEEEecCCeEEEEECC------CCEEECCEEEECCCHHHHhhCccCCCCCHHHHHHHHHhc
Confidence            34455677899999999999999888887777654      56899999999986421111000   0    00000000


Q ss_pred             CCCC-eeeCCCCCCCCCCEEEecccCCC--CCcHHHHHHHHHHHHHHhh
Q psy14927       1026 EKGR-VPVNSRFQTVIPNIFAIGDCIHG--PMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1026 ~~G~-I~Vd~~~~ts~~~IyAiGD~~~~--~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                      ..|. ........+...+|+.+|+....  +.....|+.+|..+|..|+
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~g~~~ga~~~g~~~a~~i~  334 (383)
T d2v5za1         286 PPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREIL  334 (383)
T ss_dssp             CTTHHHHHGGGTTCCBTTEEECSGGGCSSSTTSHHHHHHHHHHHHHHHH
T ss_pred             cCCccchhhhhhcCCcCceEeccccccccCCcchHHHHHHHHHHHHHHH
Confidence            1111 11122334556679999986542  4456778999999988764

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.33  E-value=1.7e-07  Score=88.03  Aligned_cols=87  Identities=13%  Similarity=0.135  Sum_probs=63.9

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEec
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITG  868 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id  868 (1074)
                      ++|+|||||+.|+.+|..+++     ++++..+......        .+   ..+...+.+.+++.||++++| .++.++
T Consensus        36 k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~--------~~---~~~~~~~~~~~~~~GV~i~~~~~v~~i~  104 (133)
T d1q1ra2          36 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERV--------TA---PPVSAFYEHLHREAGVDIRTGTQVCGFE  104 (133)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTT--------SC---HHHHHHHHHHHHHHTCEEECSCCEEEEE
T ss_pred             CEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccc--------cc---hhhhhhhhhcccccccEEEeCCeEEEEE
Confidence            449999999999999999998     6777766543221        01   233344567778889999999 566664


Q ss_pred             C----Ce-EEEEeCCCCeeEEEcCeEEEccC
Q psy14927        869 P----NT-VTVIKSDGSTEEVKTKNILIATG  894 (1074)
Q Consensus       869 ~----~~-~~v~~~~G~~~~i~~d~lIIATG  894 (1074)
                      .    .. ..+.+++|  .++++|.||+|+|
T Consensus       105 ~~~~~~~v~~v~~~~G--~~i~~D~vi~a~G  133 (133)
T d1q1ra2         105 MSTDQQKVTAVLCEDG--TRLPADLVIAGIG  133 (133)
T ss_dssp             ECTTTCCEEEEEETTS--CEEECSEEEECCC
T ss_pred             EeCCCceEEEEECCCC--CEEECCEEEEeeC
Confidence            2    22 34678898  6899999999998

>d1gesa3 d.87.1.1 (A:336-450) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.32  E-value=6.1e-08  Score=88.54  Aligned_cols=65  Identities=25%  Similarity=0.213  Sum_probs=58.9

Q ss_pred             EeccchhhccHHHH-hc--cccccccccccccccccccccCCcceEEEEeccCCCcccccccccCCCc
Q psy14927        390 LPVEKWTLLSLARV-LE--GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPGIE  454 (1074)
Q Consensus       390 ~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~  454 (1074)
                      .|.+|+|||||+|| ++  +..+++.++||..++|+...+.+.|++|++.+++++++||.|+.+.+..
T Consensus        11 ~PeiA~VGlte~eA~~~~~~~~v~~~~~~~~~~~~a~~~~~~~g~~k~v~~~~~~~IlGa~ivG~~A~   78 (115)
T d1gesa3          11 HPPIGTVGLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFGMD   78 (115)
T ss_dssp             SSCEEEEECCHHHHHHHHCGGGEEEEEEEEECHHHHTSSSCCEEEEEEEEETTTTEEEEEEEESTTHH
T ss_pred             CCccEEEeCCHHHHHHHcCCcccceeeeecccccccceeccccceEEEEEecCCcEEEEEEEECCCHH
Confidence            48999999999999 55  5568888999999999999999999999999999999999999987643

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.32  E-value=2.2e-05  Score=85.00  Aligned_cols=223  Identities=12%  Similarity=0.082  Sum_probs=146.8

Q ss_pred             HHhhhcCCHHHHHHHHHHcCcccchhhhHhh--hcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHH----HHHhh
Q psy14927          4 EETMKNGDIDRAIRMFEKAETHQQHVPRMLL--ENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKY----YEEAR   77 (1074)
Q Consensus         4 ~~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~----y~~a~   77 (1074)
                      +.|++.|.++.|+.+|...+.++ ++...++  +++..+.+++.+.+++++|+....++....+...|.-+    ...+.
T Consensus        22 ~~c~~~~lye~A~~lY~~~~d~~-rl~~~~v~l~~~~~avd~~~k~~~~~~~k~~~~~l~~~~e~~la~i~~~~~~~~~d  100 (336)
T d1b89a_          22 DRCYDEKMYDAAKLLYNNVSNFG-RLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD  100 (336)
T ss_dssp             -------CTTTHHHHHHHTTCHH-HHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHH
T ss_pred             HHHHHCCCHHHHHHHHHhCCCHH-HHHHHHHhhccHHHHHHHHHHcCCHHHHHHHHHHHHhCcHHHHHHHHHHHhhcCHH
Confidence            46889999999999999999998 8877775  58999999999999999999999999988877765432    11122


Q ss_pred             ChhhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhcCChHHHHHHHHH-hCCh--HHHHHHHHHhCchHH
Q psy14927         78 DYLSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQFDEAIHFYSV-AGSC--GNAVRLCKEQALDDQ  149 (1074)
Q Consensus        78 d~~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~-a~~~--~~A~~la~~~~~~~~  149 (1074)
                      ...++|..+...|.++++..+..     ++.+.+-...++..|.+.+ -+.-++++.+ +.++  ..|++.|+++++   
T Consensus       101 ~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~~y~~~k~~~~c~~~~l---  176 (336)
T d1b89a_         101 ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHL---  176 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTTSCHHHHHHHHHTTTC---
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhccccCCHHHHHHHHHHcCC---
Confidence            22334444555555555444333     2233333444555554433 2344444444 3332  445555555422   


Q ss_pred             HHHHhhhcCchhHHHHHHHHccCChhHHHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhh
Q psy14927        150 LWNLALSAGPSEQIEAATYLETIEPDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGV  229 (1074)
Q Consensus       150 ~~~l~~~~~~~~~~~~A~~~e~~~~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~  229 (1074)
                                              +.+++-+|.+-|++.+|+.+.++....                .-+.+..++++..
T Consensus       177 ------------------------~~elv~Ly~~~~~~~~A~~~~i~~~~~----------------~~~~~~f~e~~~k  216 (336)
T d1b89a_         177 ------------------------WAELVFLYDKYEEYDNAIITMMNHPTD----------------AWKEGQFKDIITK  216 (336)
T ss_dssp             ------------------------HHHHHHHHHHTTCHHHHHHHHHHSTTT----------------TCCHHHHHHHHHH
T ss_pred             ------------------------hHHHHHHHHhcCCHHHHHHHHHHcchh----------------hhhHHHHHHHHHc
Confidence                                    467889999999999999999985211                2233566777888


Q ss_pred             cchHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHccCCHHHHHHHH
Q psy14927        230 SRMKEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANFY  275 (1074)
Q Consensus       230 ~r~~~l~~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~  275 (1074)
                      ..++++|.++..++..    ..|..++.++......-...++.+..
T Consensus       217 ~~N~e~~~~~i~~yL~----~~p~~i~~lL~~v~~~~d~~r~V~~~  258 (336)
T d1b89a_         217 VANVELYYRAIQFYLE----FKPLLLNDLLMVLSPRLDHTRAVNYF  258 (336)
T ss_dssp             CSSTHHHHHHHHHHHH----HCGGGHHHHHHHHGGGCCHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHH----cCHHHHHHHHHHhccCCCHHHHHHHH
Confidence            8899999999987753    35888888888888887777777653

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.31  E-value=2.3e-07  Score=96.30  Aligned_cols=113  Identities=21%  Similarity=0.377  Sum_probs=83.0

Q ss_pred             EEEEEeCCChhHHHHHHHHHHHcCC-CHHHHhhhcccCCccccccccccCCcccccCCCchHHHhhcchhhHHhccCccc
Q psy14927        490 LGVHIIGPAAGELINEAVLAMEYGA-SCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMK  568 (1074)
Q Consensus       490 lG~~iiG~~a~eli~~~a~a~~~~~-~~~~l~~~~~~hPt~s~e~~~~~ggtc~n~GCvpkk~l~~aa~~~~~~~~~~a~  568 (1074)
                      ..+.|||.+++.+...+..| +.|. ++.-+. ...+.+..   ....+||+|+|.||+|+|.|++++++.+..+.  +.
T Consensus         4 YDviIIG~GpaGl~aA~~aa-~~g~k~V~iie-~~~~~~~~---~~~~lGG~c~n~g~ip~k~l~~~a~~~~~~~~--~~   76 (238)
T d1aoga1           4 FDLVVIGAGSGGLEAAWNAA-TLYKKRVAVID-VQMVHGPP---FFSALGGTCVNVGCVPKKLMVTGAQYMEHLRE--SA   76 (238)
T ss_dssp             BSEEEECCSHHHHHHHHHHH-HTSCCCEEEEE-SCSSSBTT---TBCCTTHHHHHHSHHHHHHHHHHHHHHHHHHH--GG
T ss_pred             cCEEEECCCHHHHHHHHHHH-HcCCCEEEEEE-eecccCcc---ccccccccccccccccchhhhhhHHHHHHHHH--HH
Confidence            34678999999988544444 5554 332111 11111111   12578999999999999999999999887764  67


Q ss_pred             cCCeeccC--cccCHHHHHHHHHHHHHHHHHHHHHHh-hhCccc
Q psy14927        569 ARGIEVEG--VKLNLETMMGTKSAAVKALTGGIAHLF-KSNKAL  609 (1074)
Q Consensus       569 ~~G~~~~~--~~~~w~~~~~~~~~~i~~l~~~~~~~l-~~~~i~  609 (1074)
                      .+|+.+..  +..||..++++++..|...+..+..+| ...+|+
T Consensus        77 ~~G~~~~~~~~~~d~~~l~~~k~~~v~~~~~~~~~~l~~~~gV~  120 (238)
T d1aoga1          77 GFGWEFDRTTLRAEWKNLIAVKDEAVLNINKSYDEMFRDTEGLE  120 (238)
T ss_dssp             GGTEECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHSTTEE
T ss_pred             hcCCcccCccccccHHHHHHHHHHhhhccccceeeeeecccccE
Confidence            88887654  667999999999999999998888887 588888

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.31  E-value=4.3e-07  Score=83.29  Aligned_cols=85  Identities=13%  Similarity=0.099  Sum_probs=62.6

Q ss_pred             hhhhhccccchHHHHHHHhh--------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEE
Q psy14927        796 VVLNTLGNCAAVQANYHLAT--------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKI  866 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~--------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~  866 (1074)
                      +|+|||||+.|+..|..+++        ++++..+...         +..+   .++...+.+.+++.||+|+++ .++.
T Consensus        20 ~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il---------~~~d---~~~~~~~~~~l~~~GI~v~~~~~v~~   87 (117)
T d1feca2          20 RALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL---------RGFD---SELRKQLTEQLRANGINVRTHENPAK   87 (117)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS---------TTSC---HHHHHHHHHHHHHTTEEEEETCCEEE
T ss_pred             eEEEECCChHHHHHHHHhHhhcccccccceeccccccc---------cccc---chhhHHHHHHHhhCcEEEEcCCEEEE
Confidence            49999999999999987665        3444433321         1111   345566788899999999999 4776


Q ss_pred             ec---CCeEEEEeCCCCeeEEEcCeEEEccC
Q psy14927        867 TG---PNTVTVIKSDGSTEEVKTKNILIATG  894 (1074)
Q Consensus       867 id---~~~~~v~~~~G~~~~i~~d~lIIATG  894 (1074)
                      +.   .....+++++|  .++.+|.||+|||
T Consensus        88 i~~~~~g~~~v~~~~g--~~i~~D~Vi~a~G  116 (117)
T d1feca2          88 VTKNADGTRHVVFESG--AEADYDVVMLAIG  116 (117)
T ss_dssp             EEECTTSCEEEEETTS--CEEEESEEEECSC
T ss_pred             EEECCCCEEEEEECCC--CEEEcCEEEEecC
Confidence            64   33567888998  6899999999999

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.27  E-value=2.8e-06  Score=92.86  Aligned_cols=104  Identities=10%  Similarity=0.094  Sum_probs=74.0

Q ss_pred             CHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEcCEEEEccCCcccCC-----ccC----
Q psy14927        947 DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTH-----NLG---- 1016 (1074)
Q Consensus       947 ~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~-----~l~---- 1016 (1074)
                      +..+...+.+...+.||+++.++.+.++..+++. +.+.+.+.. +|+...+.++.||+|||--....     ...    
T Consensus       157 G~~i~~~l~~~~~~~gv~i~~~~~~~~li~~~~~v~g~~~~~~~-~g~~~~i~Ak~VvlATGG~~~~~~~t~~~~~~tGd  235 (336)
T d2bs2a2         157 GHTMLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLV-TGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGT  235 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETT-TCCEEEEECSEEEECCCCCGGGSSSBSSCTTCSCH
T ss_pred             HHHHHHHHHHHHHhccccccceeeeeecccccccccceeEEecc-CCcEEEEecCeEEEeccccccccccccccccccch
Confidence            3456666777888899999999999887766665 345555543 57778899999999997432111     000    


Q ss_pred             ----ccccC-cccCCCCCeeeCCCCCCCCCCEEEecccCC
Q psy14927       1017 ----LEEIG-IEKDEKGRVPVNSRFQTVIPNIFAIGDCIH 1051 (1074)
Q Consensus      1017 ----l~~~g-l~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~ 1051 (1074)
                          ....| .++.+-++|.++++.+|+.|++|++||+..
T Consensus       236 g~~~~~~~G~~~l~~~~~iq~~~~~~t~~~gl~a~G~~~~  275 (336)
T d2bs2a2         236 GTAIALETGIAQLGNMGGIRTDYRGEAKLKGLFSAGEAAC  275 (336)
T ss_dssp             HHHHHHTTSSSCEECCCEEECCTTSBCSSBTEEECGGGEE
T ss_pred             hhhhhhhhhhhhhccccceeechhhcccCCcceecccccc
Confidence                11223 235567899999999999999999999754

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=4.7e-07  Score=85.53  Aligned_cols=88  Identities=15%  Similarity=0.116  Sum_probs=63.9

Q ss_pred             hhhhhhccccchHHHHHHHhh---------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eE
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT---------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HG  864 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~---------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v  864 (1074)
                      ++|+|||||+.|+..|..+++         ++++..+.....        .   +..++...+.+.+++.||+++.+ .+
T Consensus        38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~--------~---~~~~~~~~~~~~l~~~GV~~~~~~~V  106 (137)
T d1m6ia2          38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGK--------I---LPEYLSNWTMEKVRREGVKVMPNAIV  106 (137)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTT--------T---SCHHHHHHHHHHHHTTTCEEECSCCE
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcc--------c---CCHHHHHHHHHHHHhCCcEEEeCCEE
Confidence            349999999999999999975         333333322111        0   11344455778888999999999 46


Q ss_pred             EEec--CCeEEEEeCCCCeeEEEcCeEEEccCC
Q psy14927        865 KITG--PNTVTVIKSDGSTEEVKTKNILIATGS  895 (1074)
Q Consensus       865 ~~id--~~~~~v~~~~G~~~~i~~d~lIIATG~  895 (1074)
                      ..++  ...+.+++++|  .++.+|.||+|||.
T Consensus       107 ~~i~~~~~~~~v~l~~G--~~i~aD~Vi~A~Gv  137 (137)
T d1m6ia2         107 QSVGVSSGKLLIKLKDG--RKVETDHIVAAVGL  137 (137)
T ss_dssp             EEEEEETTEEEEEETTS--CEEEESEEEECCCE
T ss_pred             EEEEecCCEEEEEECCC--CEEECCEEEEeecC
Confidence            6664  55678899999  78999999999993

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=4.6e-07  Score=92.94  Aligned_cols=102  Identities=29%  Similarity=0.428  Sum_probs=85.6

Q ss_pred             EEEeCCChhHHHHHHHHHHHcCCCHHHHhhhcccCCccccccccccCCcccccCCCchHHHhhcchhhHHhccCccccCC
Q psy14927        492 VHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARG  571 (1074)
Q Consensus       492 ~~iiG~~a~eli~~~a~a~~~~~~~~~l~~~~~~hPt~s~e~~~~~ggtc~n~GCvpkk~l~~aa~~~~~~~~~~a~~~G  571 (1074)
                      +.|||.+.+.+. .+..+.+.|+++            .-+|. +.+||+|+|+||+|+|.|+++++..+....  ...++
T Consensus         6 viIIG~GpaG~~-aA~~aar~G~kV------------~vIEk-~~~GG~c~n~g~~~~k~l~~~a~~~~~~~~--~~~~~   69 (221)
T d3grsa1           6 YLVIGGGSGGLA-SARRAAELGARA------------AVVES-HKLGGTCVNVGCVPKKVMWNTAVHSEFMHD--HADYG   69 (221)
T ss_dssp             EEEECCSHHHHH-HHHHHHHTTCCE------------EEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHT--TGGGT
T ss_pred             EEEECCCHHHHH-HHHHHHHCCCEE------------EEEec-cCCCCccccchhhhhhhhhhHHHHHHHHhh--hhhcc
Confidence            568999999887 455666788754            33443 789999999999999999999987776653  44677


Q ss_pred             eeccCcccCHHHHHHHHHHHHHHHHHHHHHHhhhCccc
Q psy14927        572 IEVEGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKAL  609 (1074)
Q Consensus       572 ~~~~~~~~~w~~~~~~~~~~i~~l~~~~~~~l~~~~i~  609 (1074)
                      +....+.++|...+.+++..+..+......++++.+|+
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~gV~  107 (221)
T d3grsa1          70 FPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIE  107 (221)
T ss_dssp             SCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred             ccccccchhhhhhhhhhheEEeeeccchhhhhccCceE
Confidence            77778899999999999999999999999999999999

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.23  E-value=4.9e-08  Score=101.58  Aligned_cols=92  Identities=9%  Similarity=0.036  Sum_probs=65.9

Q ss_pred             hhhhhccccchHHHHHHHhh------------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeee
Q psy14927        796 VVLNTLGNCAAVQANYHLAT------------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGH  863 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~------------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~  863 (1074)
                      +|+|||+|||||+||++|++            ++||+.+.+||.+++...+.+..  ...+.......+...|++++++.
T Consensus         4 ~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~p~~~~--~~~~~~~~~~~~~~~g~~~~~~~   81 (239)
T d1lqta2           4 YIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPK--IKSISKQFEKTAEDPRFRFFGNV   81 (239)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTG--GGGGHHHHHHHHTSTTEEEEESC
T ss_pred             EEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccCccccc--chhhhhhhhhhhccCCceEEEEE
Confidence            59999999999999999988            48999999999886653333222  24555666777888899999994


Q ss_pred             EEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        864 GKITGPNTVTVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       864 v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                      .  +... ..+  +   .....||.+++|||+.+
T Consensus        82 ~--v~~~-~~~--~---~~~~~~~~v~~atGa~~  107 (239)
T d1lqta2          82 V--VGEH-VQP--G---ELSERYDAVIYAVGAQS  107 (239)
T ss_dssp             C--BTTT-BCH--H---HHHHHSSEEEECCCCCE
T ss_pred             E--eccc-cch--h---hhhccccceeeecCCCc
Confidence            2  2211 000  0   01246999999999975

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.22  E-value=2.5e-07  Score=90.55  Aligned_cols=99  Identities=13%  Similarity=0.091  Sum_probs=66.0

Q ss_pred             hhhhhccccchHHHHHHHhh----hhhhhccccccc-cchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEecC
Q psy14927        796 VVLNTLGNCAAVQANYHLAT----KLFTQAGDKGVK-LNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITGP  869 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~----~l~e~~~~~g~~-~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id~  869 (1074)
                      +|||||||++|+.+|..|++    +++++.+.+... +.+......... ...+.......+.+.+++++.+ .++.++.
T Consensus         2 rVvIIGgG~~G~e~A~~l~~~~~Vtvv~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~   80 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQTYEVTVIDKEPVPYYSKPMLSHYIAGFIP-RNRLFPYSLDWYRKRGIEIRLAEEAKLIDR   80 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTSEEEEECSSSSCCCCSTTHHHHHTTSSC-GGGGCSSCHHHHHHHTEEEECSCCEEEEET
T ss_pred             eEEEECCcHHHHHHHHHHHcCCCEEEEeccccccccccchhhhhhhhhh-hhhhhHHHHHHHHhccceeeeecccccccc
Confidence            48999999999999999987    666665433221 111222111111 1234444566777789999998 5788877


Q ss_pred             CeEEEEeCCCCeeEEEcCeEEEccCCCCC
Q psy14927        870 NTVTVIKSDGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       870 ~~~~v~~~~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      ....+..+++   ++.||.||+|||..|.
T Consensus        81 ~~~~~~~~~~---~i~~D~li~a~G~~~~  106 (167)
T d1xhca1          81 GRKVVITEKG---EVPYDTLVLATGAPNV  106 (167)
T ss_dssp             TTTEEEESSC---EEECSEEEECCCEECC
T ss_pred             cccccccccc---ccccceeEEEEEecCC
Confidence            6555544443   7999999999998764

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.22  E-value=6.7e-08  Score=100.18  Aligned_cols=118  Identities=47%  Similarity=0.743  Sum_probs=96.6

Q ss_pred             EEEEEeCCChhHHHHHHHHHHHcCCCHHHHhhhcccCCccccccccccCCcccccCCCchHHHhhcchhhHHhccCcccc
Q psy14927        490 LGVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKA  569 (1074)
Q Consensus       490 lG~~iiG~~a~eli~~~a~a~~~~~~~~~l~~~~~~hPt~s~e~~~~~ggtc~n~GCvpkk~l~~aa~~~~~~~~~~a~~  569 (1074)
                      ..+.|||.+.+.+.... .+.+.|.++            .-++..+.+||+|+|.||+|+|.++..++..+..+. .++.
T Consensus         6 yDviVIG~GpAGl~aA~-~aa~~G~kV------------~lie~~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~-~~~~   71 (233)
T d1v59a1           6 HDVVIIGGGPAGYVAAI-KAAQLGFNT------------ACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHT-EAQK   71 (233)
T ss_dssp             EEEEEECCSHHHHHHHH-HHHHTTCCE------------EEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHH-TSGG
T ss_pred             cCEEEECCCHHHHHHHH-HHHHCCCcE------------EEEEecCCcceEeEEeeccccccccccchhHHHhhh-hHhh
Confidence            45788999999988544 444788764            334545689999999999999999999988887652 3789


Q ss_pred             CCeecc-CcccCHHHHHHHHHHHHHHHHHHHHHHhhhCccchhhHHHHHHHhhhhHHHHHHHHHHHHhh
Q psy14927        570 RGIEVE-GVKLNLETMMGTKSAAVKALTGGIAHLFKSNKALKIITKQIILILIIYRVLLKWWAQYIEST  637 (1074)
Q Consensus       570 ~G~~~~-~~~~~w~~~~~~~~~~i~~l~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~l~~~~a~~~e~~  637 (1074)
                      |||... ...++|..+..++...++.++.++..+++..+|+                ++.++|.|.+.+
T Consensus        72 ~Gi~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~v~----------------~~~G~a~f~~~~  124 (233)
T d1v59a1          72 RGIDVNGDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVT----------------YYKGNGSFEDET  124 (233)
T ss_dssp             GTEEECSCEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCE----------------EEESEEEESSSS
T ss_pred             cCeeEeeceecchhhhhheeeeEEEEeecceeeeeccCCeE----------------EEEEEEEEecCC
Confidence            999866 4789999999999999999999999999999999                777777766543

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.21  E-value=3.3e-07  Score=91.82  Aligned_cols=102  Identities=17%  Similarity=0.089  Sum_probs=70.3

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccch---hhhhhhh-hHHHhhhhhhHHHHhhhCCeEEEeeeE
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNL---ETMMGTK-SAAVKALTGGIAHLFKSNKVTQLNGHG  864 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~---~~~~~~~-~~~~~~l~~~~~~~l~~~gV~~~~g~v  864 (1074)
                      .++|+||||||+||+||++++|     +++++....+.....   ...+... ......+......++...++.+..++|
T Consensus         5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V   84 (190)
T d1trba1           5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHI   84 (190)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECCCE
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcEEeccee
Confidence            4569999999999999999999     677765544332211   1111111 111245556677788889999999988


Q ss_pred             EEecC--CeEEEEeCCCCeeEEEcCeEEEccCCCCC
Q psy14927        865 KITGP--NTVTVIKSDGSTEEVKTKNILIATGSEVT  898 (1074)
Q Consensus       865 ~~id~--~~~~v~~~~G~~~~i~~d~lIIATG~~p~  898 (1074)
                      +.++.  ..+.++..++   .+..+.+|++||..|+
T Consensus        85 ~~~~~~~~~~~v~~~~~---~~~~~~viva~G~~~~  117 (190)
T d1trba1          85 NKVDLQNRPFRLNGDNG---EYTCDALIIATGASAR  117 (190)
T ss_dssp             EEEECSSSSEEEEESSC---EEEEEEEEECCCEEEC
T ss_pred             EEEecCCCcEEEEEeee---eEeeeeeeeecceeee
Confidence            87764  4456665554   7899999999998763

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.21  E-value=7.7e-07  Score=91.27  Aligned_cols=104  Identities=38%  Similarity=0.594  Sum_probs=86.8

Q ss_pred             EEEeCCChhHHHHHHHHHHHcCCCHHHHhhhcccCCccccccccccCCcccccCCCchHHHhhcchhhHHhc-cCccccC
Q psy14927        492 VHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAH-SGDMKAR  570 (1074)
Q Consensus       492 ~~iiG~~a~eli~~~a~a~~~~~~~~~l~~~~~~hPt~s~e~~~~~ggtc~n~GCvpkk~l~~aa~~~~~~~-~~~a~~~  570 (1074)
                      +.|||.+.+.+. .+..+.+.|.++            .-+|. +.+||||+|+||+|+|.++.++...+..+ ..++..+
T Consensus         8 lvVIG~GpaGl~-aA~~aa~~G~~V------------~liE~-~~~GG~c~~~gc~p~k~~~~~~~~~~~~~~~~~~~~~   73 (220)
T d1lvla1           8 LLIIGGGPGGYV-AAIRAGQLGIPT------------VLVEG-QALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPL   73 (220)
T ss_dssp             EEEECCSHHHHH-HHHHHHHHTCCE------------EEECS-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred             EEEECCCHHHHH-HHHHHHHCCCcE------------EEEec-CCCCCcccccccccchhhhhhHHHHhhhhhccccccc
Confidence            568999999988 455566788765            23343 68999999999999999999987766553 3356788


Q ss_pred             CeeccCcccCHHHHHHHHHHHHHHHHHHHHHHhhhCccc
Q psy14927        571 GIEVEGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKAL  609 (1074)
Q Consensus       571 G~~~~~~~~~w~~~~~~~~~~i~~l~~~~~~~l~~~~i~  609 (1074)
                      |+.+..+..+|...+..+...+......+..++...+++
T Consensus        74 g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~v~  112 (220)
T d1lvla1          74 GISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVK  112 (220)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred             eEEeccceehHHHHhhhheeEEeeeccchhhhhccCceE
Confidence            999889999999999999999999999999999999999

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=2.2e-05  Score=84.29  Aligned_cols=86  Identities=17%  Similarity=0.217  Sum_probs=65.4

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhh
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVR   84 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr   84 (1074)
                      .+.+.|++++|+..|+++-..+                    ++++..|..+|..+...|++++|..+|.++=+.     
T Consensus        28 ~~~~~g~~~~A~~~~~~al~~~--------------------P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~-----   82 (323)
T d1fcha_          28 RRLQEGDLPNAVLLFEAAVQQD--------------------PKHMEAWQYLGTTQAENEQELLAISALRRCLEL-----   82 (323)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHSC--------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC--------------------CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc-----
Confidence            3566778888888887765333                    445778888888888888999888888776322     


Q ss_pred             HhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927         85 VLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus        85 ~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                                      .+.+......+|..|...|++++|++.|.++
T Consensus        83 ----------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~  113 (323)
T d1fcha_          83 ----------------KPDNQTALMALAVSFTNESLQRQACEILRDW  113 (323)
T ss_dssp             ----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ----------------ccccccccccccccccccccccccccchhhH
Confidence                            3456677889999999999999999988765

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=0.00018  Score=77.80  Aligned_cols=74  Identities=11%  Similarity=0.104  Sum_probs=54.4

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchhh-------hHhh--hcHHHHHHHhhc-----CCChHHHHHHHHHHHhccCHHHHHH
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHVP-------RMLL--ENTDKLEKYIIQ-----SKDPVLLKWWAQYIESTEDMDLAMK   71 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~~-------~~~~--~~~~~~~~~~~~-----~~~~~l~~~~a~~~e~~~~~~~A~~   71 (1074)
                      .-+.|+|++|+++|+++-..+..-+       .+++  ++++++..+..+     ++++..|..+|..+...|++++|.+
T Consensus         9 ~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~   88 (388)
T d1w3ba_           9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIE   88 (388)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccccc
Confidence            4567999999999999865432222       2222  477776666665     5678888889999999999999999


Q ss_pred             HHHHhhCh
Q psy14927         72 YYEEARDY   79 (1074)
Q Consensus        72 ~y~~a~d~   79 (1074)
                      +|..+...
T Consensus        89 ~~~~~~~~   96 (388)
T d1w3ba_          89 HYRHALRL   96 (388)
T ss_dssp             HHHHHHHH
T ss_pred             cccccccc
Confidence            98876543

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.16  E-value=1.6e-06  Score=79.57  Aligned_cols=87  Identities=11%  Similarity=0.071  Sum_probs=64.3

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEec-
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITG-  868 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id-  868 (1074)
                      +|+|||||+.|+..|..+++     ++++..+.....+         +   .++...+.+.+++.||+|+.| +++.+. 
T Consensus        24 ~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~~---------d---~ei~~~l~~~l~~~Gv~i~~~~~v~~i~~   91 (119)
T d3lada2          24 KLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAV---------D---EQVAKEAQKILTKQGLKILLGARVTGTEV   91 (119)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTS---------C---HHHHHHHHHHHHHTTEEEEETCEEEEEEE
T ss_pred             eEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCcc---------c---chhHHHHHHHHHhcCceeecCcEEEEEEE
Confidence            39999999999999999999     6666655442221         1   345555778888999999999 466664 


Q ss_pred             -CCeEEEEeCCC-CeeEEEcCeEEEccC
Q psy14927        869 -PNTVTVIKSDG-STEEVKTKNILIATG  894 (1074)
Q Consensus       869 -~~~~~v~~~~G-~~~~i~~d~lIIATG  894 (1074)
                       .+.+++++.++ +..++.+|.||+|||
T Consensus        92 ~~~~v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          92 KNKQVTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             CSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred             eCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence             44556665443 335799999999998

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.16  E-value=3e-07  Score=99.08  Aligned_cols=100  Identities=19%  Similarity=0.191  Sum_probs=73.1

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhh-------------hh------------hHHHhh
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMG-------------TK------------SAAVKA  843 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~-------------~~------------~~~~~~  843 (1074)
                      +-+|+||||||+||.+|..|.+     ++||+.+..||.+.+...+.             ..            .....+
T Consensus         7 ~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p~~~e   86 (298)
T d1w4xa1           7 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPE   86 (298)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHH
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccCccch
Confidence            4459999999999999999998     89999988887542211000             00            011245


Q ss_pred             hhhhHHHHhhhCCe--EEEee-eEEEec----CCeEEEEeCCCCeeEEEcCeEEEccCC
Q psy14927        844 LTGGIAHLFKSNKV--TQLNG-HGKITG----PNTVTVIKSDGSTEEVKTKNILIATGS  895 (1074)
Q Consensus       844 l~~~~~~~l~~~gV--~~~~g-~v~~id----~~~~~v~~~~G~~~~i~~d~lIIATG~  895 (1074)
                      +..++....+++++  .+.++ +|+.+.    .+..+|.+.++  .++++|+||+|||.
T Consensus        87 ~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~--~~~~~~~~i~atG~  143 (298)
T d1w4xa1          87 ILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHG--DRIRARYLIMASGQ  143 (298)
T ss_dssp             HHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTC--CEEEEEEEEECCCS
T ss_pred             HHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccc--cccccceEEEeecc
Confidence            66778888888888  47888 476663    24678888888  68999999999996

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.14  E-value=5.4e-05  Score=80.51  Aligned_cols=107  Identities=16%  Similarity=0.206  Sum_probs=60.3

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHhHHHHhhcCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhcCChHH
Q psy14927        256 KSIISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGNYEK  335 (1074)
Q Consensus       256 ~~i~~~Y~k~~~~~~aa~~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (1074)
                      ..+..++...+....++.++..++..- -.-|+|.+|...+..+.+.....+..... .... -....-.++. .|++..
T Consensus       142 ~~A~~l~~~~~~~~~~~~~~~~la~~~-~~~g~y~~A~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~l~-~~d~~~  217 (290)
T d1qqea_         142 ELAGEWYAQDQSVALSNKCFIKCADLK-ALDGQYIEASDIYSKLIKSSMGNRLSQWS-LKDY-FLKKGLCQLA-ATDAVA  217 (290)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHTTSSCTTTGGG-HHHH-HHHHHHHHHH-TTCHHH
T ss_pred             HHHHHHHHhcCchhhhhhHHHHHHHHH-HHcChHHHHHHHHHHHHHhCccchhhhhh-HHHH-HHHHHHHHHH-hccHHH
Confidence            334444555555666777788888887 88899999999998887765554433221 1111 1112223445 699999


Q ss_pred             HhhHHHHHHHHHhhccCcc-hhHHHHHHHHHHH
Q psy14927        336 GLGALNEAKRCLLKHNDSM-YETLKSSVVEKIA  367 (1074)
Q Consensus       336 a~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~  367 (1074)
                      |.+.+.++-..-..|+++- ..++. .+++++.
T Consensus       218 A~~~~~~~~~~~~~~~~sre~~~l~-~l~~a~~  249 (290)
T d1qqea_         218 AARTLQEGQSEDPNFADSRESNFLK-SLIDAVN  249 (290)
T ss_dssp             HHHHHHGGGCC---------HHHHH-HHHHHHH
T ss_pred             HHHHHHHHHHhCCCccchHHHHHHH-HHHHHHH
Confidence            9988887766555555542 22332 3555543

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.13  E-value=2.7e-06  Score=92.45  Aligned_cols=59  Identities=14%  Similarity=0.287  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEecCC-e-EEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927        948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSGD-N-ITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus       948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~-~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
                      +.+...+.+.+++.|+++++++.++++.-+++ . ..+...+.  +++...+.++.||+|+|-
T Consensus       148 ~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~g~V~Gv~~~~~--~~~~~~i~Ak~VVlAtGG  208 (317)
T d1qo8a2         148 PEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGK--HTGYYMIGAKSVVLATGG  208 (317)
T ss_dssp             HHHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEET--TTEEEEEEEEEEEECCCC
T ss_pred             hhhhHHHHHHhhhccceeeeccchhheeecccccceeeEeecc--cceEEEEeccceEEeccc
Confidence            45777788888999999999999999754333 3 44555552  244567899999999984

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.12  E-value=1e-06  Score=96.69  Aligned_cols=102  Identities=9%  Similarity=-0.038  Sum_probs=66.3

Q ss_pred             hhhhhhccccchHHHHHHHhh-------hhhhhccccccccchhhhhh--------------------------------
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVKLNLETMMG--------------------------------  835 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~~~~~~~~~--------------------------------  835 (1074)
                      |+|+||||||+||.+|..|.+       ++||+.+..||.+.+...+.                                
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~y~   84 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLYR   84 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCCT
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCcccccccccccccccccccccccccch
Confidence            349999999999999999876       78999988876543211100                                


Q ss_pred             --------------------hhh--HHHhhhhhhHHHHhhhCCeEEEee-eEEEec--CCeEEEEeCCC----CeeEEEc
Q psy14927        836 --------------------TKS--AAVKALTGGIAHLFKSNKVTQLNG-HGKITG--PNTVTVIKSDG----STEEVKT  886 (1074)
Q Consensus       836 --------------------~~~--~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id--~~~~~v~~~~G----~~~~i~~  886 (1074)
                                          ...  .....+..++....+..+..++++ +|+.++  .+.+.|++.++    ...+..|
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~~~w~Vt~~~~~~~~~~~~~~~  164 (335)
T d2gv8a1          85 DLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIF  164 (335)
T ss_dssp             TCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEEEEE
T ss_pred             hhhcCCcHhhhhhhhhcCCcccccCCchHHHHHHHHHHHHHhhhcccCceEEEEEEecCCEEEEEEEecCCCCeEEEEEe
Confidence                                000  001234445556666667778888 476665  35556665432    2235679


Q ss_pred             CeEEEccCCC
Q psy14927        887 KNILIATGSE  896 (1074)
Q Consensus       887 d~lIIATG~~  896 (1074)
                      |+||+|||..
T Consensus       165 d~VI~AtG~~  174 (335)
T d2gv8a1         165 DAVSICNGHY  174 (335)
T ss_dssp             SEEEECCCSS
T ss_pred             eEEEEccccc
Confidence            9999999974

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.12  E-value=1.4e-06  Score=80.41  Aligned_cols=83  Identities=14%  Similarity=0.080  Sum_probs=62.5

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEec
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITG  868 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id  868 (1074)
                      ++|+|||||+.|+.+|..+++     ++++..+...+      +    +   .++...+.+.+++.||+|+.+ .++.++
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~------~----d---~~~~~~~~~~l~~~GV~~~~~~~v~~~~   99 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG------L----D---EELSNMIKDMLEETGVKFFLNSELLEAN   99 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT------C----C---HHHHHHHHHHHHHTTEEEECSCCEEEEC
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEeccccccC------C----C---HHHHHHHHHHHHHCCcEEEeCCEEEEEe
Confidence            459999999999999999998     67766554321      1    1   334445677788899999999 577787


Q ss_pred             CCeEEEEeCCCCeeEEEcCeEEEccCC
Q psy14927        869 PNTVTVIKSDGSTEEVKTKNILIATGS  895 (1074)
Q Consensus       869 ~~~~~v~~~~G~~~~i~~d~lIIATG~  895 (1074)
                      .+.+   +.++  ..+++|.||+|||.
T Consensus       100 ~~~v---~~~~--~~i~~D~vi~a~Gv  121 (122)
T d1xhca2         100 EEGV---LTNS--GFIEGKVKICAIGI  121 (122)
T ss_dssp             SSEE---EETT--EEEECSCEEEECCE
T ss_pred             CCEE---EeCC--CEEECCEEEEEEEe
Confidence            7653   3355  58999999999995

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.11  E-value=1.2e-06  Score=89.18  Aligned_cols=100  Identities=18%  Similarity=0.165  Sum_probs=60.2

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhcc-ccccccchh-----------hhhhhhhHHHhhhhhhHHHHh-hhCCe
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAG-DKGVKLNLE-----------TMMGTKSAAVKALTGGIAHLF-KSNKV  857 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~-~~g~~~~~~-----------~~~~~~~~~~~~l~~~~~~~l-~~~gV  857 (1074)
                      +||||||||||++||++++|     .+++.+. ..|.....+           .....+......+.......+ ...++
T Consensus         4 DVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~~~nL   83 (230)
T d2cula1           4 QVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRPL   83 (230)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTTE
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhhhcCH
Confidence            49999999999999999999     4554432 111111000           000000000011112222333 34589


Q ss_pred             EEEeeeEEEe---cCCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        858 TQLNGHGKIT---GPNTVTVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       858 ~~~~g~v~~i---d~~~~~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                      +++.++|+.+   +..-..|.+.+|  .++.++.|||+||+-.
T Consensus        84 ~i~q~~V~dli~e~~~v~gV~t~~G--~~~~AkaVILtTGTFL  124 (230)
T d2cula1          84 HLFQATATGLLLEGNRVVGVRTWEG--PPARGEKVVLAVGSFL  124 (230)
T ss_dssp             EEEECCEEEEEEETTEEEEEEETTS--CCEECSEEEECCTTCS
T ss_pred             HHHhccceeeEecccceeeEEeccc--cEEEEeEEEEccCcce
Confidence            9999988765   233445788888  6899999999999864

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.07  E-value=9.3e-05  Score=78.58  Aligned_cols=143  Identities=17%  Similarity=0.126  Sum_probs=77.3

Q ss_pred             CHHHHHHHHHHcCcccchhhhHh---hhcHHHHHHHhhcCCCh----HHHHHHHHHHHhccCHHHHHHHHHHhhChhhhh
Q psy14927         11 DIDRAIRMFEKAETHQQHVPRML---LENTDKLEKYIIQSKDP----VLLKWWAQYIESTEDMDLAMKYYEEARDYLSMV   83 (1074)
Q Consensus        11 ~~~eA~~~Ye~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~v   83 (1074)
                      +|++|+.+|.+++..- +..+.+   +..+.++.++-.+..++    ..+...|..+...|++++|+++|.++      +
T Consensus        32 ~~~~Aa~~y~~aa~~y-~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a------~  104 (290)
T d1qqea_          32 KFEEAADLCVQAATIY-RLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENA------I  104 (290)
T ss_dssp             HHHHHHHHHHHHHHHH-HHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------H
T ss_pred             cHHHHHHHHHHHHHHH-HHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHh------h
Confidence            5788888888776321 111111   01222333332223222    24445566666666666666666433      3


Q ss_pred             hHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHh-cCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhH
Q psy14927         84 RVLCFLQDFSRAAELANASGDTAAAYHLARQYEN-SGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQ  162 (1074)
Q Consensus        84 r~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~-~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~  162 (1074)
                      +++...|++..+.         .....+|..|+. .|++++|+++|.+      |+++....+.......        .+
T Consensus       105 ~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~~A~~~~~~------A~~l~~~~~~~~~~~~--------~~  161 (290)
T d1qqea_         105 QIFTHRGQFRRGA---------NFKFELGEILENDLHDYAKAIDCYEL------AGEWYAQDQSVALSNK--------CF  161 (290)
T ss_dssp             HHHHHTTCHHHHH---------HHHHHHHHHHHHTTCCHHHHHHHHHH------HHHHHHHTTCHHHHHH--------HH
T ss_pred             HHhhhcccchhHH---------HHHHHHHHhHhhHHHHHHHHHHHHHH------HHHHHHhcCchhhhhh--------HH
Confidence            3444555554332         346688888865 5999999999865      5666665543332221        23


Q ss_pred             HHHHHHHcc-CChhHHHHHHHH
Q psy14927        163 IEAATYLET-IEPDKAVLLYHK  183 (1074)
Q Consensus       163 ~~~A~~~e~-~~~~~A~~ly~k  183 (1074)
                      ..+|..+.. +++++|+..|.+
T Consensus       162 ~~la~~~~~~g~y~~A~~~~~~  183 (290)
T d1qqea_         162 IKCADLKALDGQYIEASDIYSK  183 (290)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcChHHHHHHHHHH
Confidence            345555444 556666666654

>d1feca3 d.87.1.1 (A:358-485) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.01  E-value=6.7e-07  Score=83.01  Aligned_cols=66  Identities=15%  Similarity=0.133  Sum_probs=58.6

Q ss_pred             EeccchhhccHHHH-hccccccccccccccccccccccCCc-ceEEEEeccCCCcccccccccCCCcE
Q psy14927        390 LPVEKWTLLSLARV-LEGIEYKVGKFPFAANSRAKTNNDTD-GFVKVLGDKLTDKVLGVHIIGPGIEY  455 (1074)
Q Consensus       390 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lg~~~~~~g~~~  455 (1074)
                      -|.+|||||||+|| ++|++++++.++|..++|++...... |++|++.++.|+++||.|+.+.+.+-
T Consensus        11 ~PeiA~VGlte~eA~~~g~~~~v~~~~~~~~~~a~~~~~~~~~~~klv~~~~~g~iLGa~ivG~~A~E   78 (128)
T d1feca3          11 IPPMGVCGYVEEDAAKKYDQVAVYESSFTPLMHNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPE   78 (128)
T ss_dssp             SSCEEEEECCHHHHHHHCSEEEEEEEEECCHHHHHHSCTTCCEEEEEEEETTTTEEEEEEEESTTHHH
T ss_pred             CCcceEEECCHHHHhhhhcCcceeecccchHHHHHhccccccceEEEeecCCCCceeEEEEECCCHHH
Confidence            38999999999999 88999999999999999998865554 58899999999999999999887443

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.01  E-value=2.8e-06  Score=77.62  Aligned_cols=84  Identities=13%  Similarity=0.131  Sum_probs=61.6

Q ss_pred             hhhhhccccchHHHHHHHhh--------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEE
Q psy14927        796 VVLNTLGNCAAVQANYHLAT--------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKI  866 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~--------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~  866 (1074)
                      +|+|||||+.|+.+|..+..        ++++..+..         .+..+   .++...+.+.+++.||++++| +++.
T Consensus        22 ~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~i---------L~~~d---~~~~~~l~~~l~~~GV~v~~~~~v~~   89 (117)
T d1aoga2          22 RVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMI---------LRGFD---HTLREELTKQLTANGIQILTKENPAK   89 (117)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSS---------STTSC---HHHHHHHHHHHHHTTCEEEESCCEEE
T ss_pred             eEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchh---------hcccc---hHHHHHHHHHHHhcCcEEEcCCEEEE
Confidence            49999999999999987765        344443322         11111   345556778889999999999 5777


Q ss_pred             ec---CCeEEEEeCCCCeeEEEcCeEEEcc
Q psy14927        867 TG---PNTVTVIKSDGSTEEVKTKNILIAT  893 (1074)
Q Consensus       867 id---~~~~~v~~~~G~~~~i~~d~lIIAT  893 (1074)
                      ++   ...+.+++++|  .++++|.||+|.
T Consensus        90 ie~~~~~~~~v~~~~G--~~i~~D~Vi~AI  117 (117)
T d1aoga2          90 VELNADGSKSVTFESG--KKMDFDLVMMAI  117 (117)
T ss_dssp             EEECTTSCEEEEETTS--CEEEESEEEECS
T ss_pred             EEEcCCCeEEEEECCC--cEEEeCEEEEeC
Confidence            74   34577889999  689999999984

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=97.99  E-value=5.8e-06  Score=89.11  Aligned_cols=59  Identities=12%  Similarity=0.179  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe--EEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927        948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN--ITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus       948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
                      ..+...+.+.+.+.||++++++.++++..++++  ..|.+.+..  +...++.++.||+|+|-
T Consensus       145 ~~~~~~l~~~a~~~gv~i~~~~~v~~li~~~~G~V~Gv~~~~~~--~~~~~i~Ak~VVlAtGG  205 (308)
T d1y0pa2         145 AHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMY--KGYYWVKADAVILATGG  205 (308)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETT--TEEEEEECSEEEECCCC
T ss_pred             HHHHHHHHHHHHhccceEEEeeccchhhhhcccccccccccccc--cceeEeecCeEEEccCc
Confidence            445666677788899999999999997665443  456666533  44567999999999983

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.98  E-value=3.5e-06  Score=76.95  Aligned_cols=86  Identities=17%  Similarity=0.246  Sum_probs=63.7

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEec
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITG  868 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id  868 (1074)
                      ++|+|||||+.|+.+|..+++     |+++..+.....++            .++...+.+.+++.||+++++ +++.++
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~~d------------~~~~~~l~~~l~~~GI~i~~~~~v~~i~   90 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFE------------KQMAAIIKKRLKKKGVEVVTNALAKGAE   90 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSC------------HHHHHHHHHHHHHTTCEEEESEEEEEEE
T ss_pred             CeEEEECCCccceeeeeeecccccEEEEEEecceeccccc------------chhHHHHHHHHHhcCCEEEcCCEEEEEE
Confidence            349999999999999999998     77777766533221            234455778888999999999 566664


Q ss_pred             --CCeEEEEe-CCCCeeEEEcCeEEEc
Q psy14927        869 --PNTVTVIK-SDGSTEEVKTKNILIA  892 (1074)
Q Consensus       869 --~~~~~v~~-~~G~~~~i~~d~lIIA  892 (1074)
                        .+.+.+++ .+|+..++.+|.|||.
T Consensus        91 ~~~~~~~v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          91 EREDGVTVTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             EETTEEEEEEEETTEEEEEEESEEEEC
T ss_pred             EcCCEEEEEEEeCCCEEEEEeEEEEEC
Confidence              34555655 4555578999999984

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.96  E-value=3.7e-06  Score=77.33  Aligned_cols=88  Identities=11%  Similarity=0.155  Sum_probs=60.0

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEec
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITG  868 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id  868 (1074)
                      ++|+|||||+.|+..|..+++     ++++..+.....++            ..+...+.+.+++.||+++++ .++.+.
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~~~d------------~~~~~~~~~~l~~~gI~v~~~~~v~~i~   90 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKD------------NETRAYVLDRMKEQGMEIISGSNVTRIE   90 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTCCS------------HHHHHHHHHHHHHTTCEEESSCEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhcccc------------cchhhhhhhhhhccccEEEcCCEEEEEE
Confidence            449999999999999999998     55655443322221            233445677888899999999 466664


Q ss_pred             CC---eEE-E-EeCCCCeeEEEcCeEEEccC
Q psy14927        869 PN---TVT-V-IKSDGSTEEVKTKNILIATG  894 (1074)
Q Consensus       869 ~~---~~~-v-~~~~G~~~~i~~d~lIIATG  894 (1074)
                      ..   ... + ....++..++++|.||+|+|
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          91 EDANGRVQAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             ECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             ecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence            32   121 1 12333347899999999998

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.94  E-value=2.4e-06  Score=85.57  Aligned_cols=100  Identities=15%  Similarity=0.072  Sum_probs=66.7

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhcccc----ccccc----hhhhhhhhh-HHHhhhhhhHHHHhhhCCeEE
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDK----GVKLN----LETMMGTKS-AAVKALTGGIAHLFKSNKVTQ  859 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~----g~~~~----~~~~~~~~~-~~~~~l~~~~~~~l~~~gV~~  859 (1074)
                      +++|+||||||+|++||++++|     +++++....    ++.+.    ....++... ....++...+.+++.++|+++
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q~~~~g~~i   84 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTI   84 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEE
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccchhhhccccccccccchHHHHHHHHHHHhhccee
Confidence            4569999999999999999999     566654322    22211    111111111 112556666778888899999


Q ss_pred             EeeeEEEecC--CeEEEEeCCCCeeEEEcCeEEEccCCC
Q psy14927        860 LNGHGKITGP--NTVTVIKSDGSTEEVKTKNILIATGSE  896 (1074)
Q Consensus       860 ~~g~v~~id~--~~~~v~~~~G~~~~i~~d~lIIATG~~  896 (1074)
                      ..++|+.++.  ..+.+.+..   .++.+|.++++||..
T Consensus        85 ~~~~V~~~~~~~~~~~v~~~~---~~~~~~~~~~a~g~~  120 (192)
T d1vdca1          85 FTETVTKVDFSSKPFKLFTDS---KAILADAVILAIGAV  120 (192)
T ss_dssp             ECCCCCEEECSSSSEEEECSS---EEEEEEEEEECCCEE
T ss_pred             eeeeEEecccccCcEEecccc---eeeeeeeEEEEeeee
Confidence            9888777654  345555444   478999999999974

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.91  E-value=6e-06  Score=75.30  Aligned_cols=85  Identities=11%  Similarity=0.078  Sum_probs=63.2

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEec
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITG  868 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id  868 (1074)
                      ++|+|||||+.|+..|..+++     ++++..+.....+         +   .++...+.+.+++.||+++++ .++.++
T Consensus        23 ~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~~~---------d---~~~~~~~~~~l~~~gV~i~~~~~v~~i~   90 (117)
T d1onfa2          23 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKF---------D---ESVINVLENDMKKNNINIVTFADVVEIK   90 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTTS---------C---HHHHHHHHHHHHHTTCEEECSCCEEEEE
T ss_pred             CEEEEECCchHHHHHHHHHHhccccceeeehhccccccc---------c---HHHHHHHHHHHHhCCCEEEECCEEEEEE
Confidence            349999999999999999988     6677655442111         1   345555778888899999999 466663


Q ss_pred             ---CCeEEEEeCCCCeeEE-EcCeEEEcc
Q psy14927        869 ---PNTVTVIKSDGSTEEV-KTKNILIAT  893 (1074)
Q Consensus       869 ---~~~~~v~~~~G~~~~i-~~d~lIIAT  893 (1074)
                         .+.+.+++++|  ..+ .+|.||+|.
T Consensus        91 ~~~~~~~~v~~~~G--~~~~~~D~Vi~AI  117 (117)
T d1onfa2          91 KVSDKNLSIHLSDG--RIYEHFDHVIYCV  117 (117)
T ss_dssp             ESSTTCEEEEETTS--CEEEEESEEEECC
T ss_pred             EcCCCeEEEEECCC--CEEEeCCEEEEeC
Confidence               34678889998  445 589999984

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=97.91  E-value=3.9e-06  Score=77.51  Aligned_cols=88  Identities=11%  Similarity=0.037  Sum_probs=63.5

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEec
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITG  868 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id  868 (1074)
                      ++++|||||+.|+..|..+++     ++++..+.....+         +   .++...+.+.+++.||+++.+ +++.+.
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~~---------d---~~~~~~l~~~l~~~gv~~~~~~~v~~v~   94 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGA---------D---RDLVKVWQKQNEYRFDNIMVNTKTVAVE   94 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTS---------C---HHHHHHHHHHHGGGEEEEECSCEEEEEE
T ss_pred             CeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccccc---------h---hhHHHHHHHHHHHcCcccccCcEEEEEE
Confidence            349999999999999999988     6666655443222         1   344455778888899999999 455554


Q ss_pred             --CCeEEEEe--CCCCeeEEEcCeEEEccC
Q psy14927        869 --PNTVTVIK--SDGSTEEVKTKNILIATG  894 (1074)
Q Consensus       869 --~~~~~v~~--~~G~~~~i~~d~lIIATG  894 (1074)
                        .+...+++  .+|...++++|.|++|+|
T Consensus        95 ~~~~g~~v~~~~~~g~~~~i~~D~vl~A~G  124 (125)
T d1ojta2          95 PKEDGVYVTFEGANAPKEPQRYDAVLVAAG  124 (125)
T ss_dssp             EETTEEEEEEESSSCCSSCEEESCEEECCC
T ss_pred             EcCCcEEEEEEeCCCCeEEEEcCEEEEecC
Confidence              44555554  445445799999999999

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=97.91  E-value=5.6e-06  Score=85.21  Aligned_cols=106  Identities=37%  Similarity=0.567  Sum_probs=89.6

Q ss_pred             EEEEEEeCCChhHHHHHHHHHHHcCCCHHHHhhhcccCCccccccccccCCcccccCCCchHHHhhcchhhHHhccCccc
Q psy14927        489 VLGVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMK  568 (1074)
Q Consensus       489 ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l~~~~~~hPt~s~e~~~~~ggtc~n~GCvpkk~l~~aa~~~~~~~~~~a~  568 (1074)
                      -..+.|||.+.+.+... ..+.+.|.++            +-+|....+||+|+|+||+|++.+..++++....+.  ..
T Consensus         6 dyDviIIG~GPaGlsaA-~~aa~~G~~V------------~viE~~~~~GG~~~~~g~~~~~~~~~~a~~~~~~~~--~~   70 (229)
T d1ojta1           6 EYDVVVLGGGPGGYSAA-FAAADEGLKV------------AIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRH--LA   70 (229)
T ss_dssp             EEEEEEECCSHHHHHHH-HHHHHTTCCE------------EEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHH--GG
T ss_pred             ccCEEEECcCHHHHHHH-HHHHHCCCeE------------EEEeccCCCCCeeeccccchhhhhhhhhhhHHhhhh--Hh
Confidence            35688999999998854 4444677754            344555679999999999999999999998887765  67


Q ss_pred             cCCeeccCcccCHHHHHHHHHHHHHHHHHHHHHHhhhCccc
Q psy14927        569 ARGIEVEGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKAL  609 (1074)
Q Consensus       569 ~~G~~~~~~~~~w~~~~~~~~~~i~~l~~~~~~~l~~~~i~  609 (1074)
                      .+|+....+++.|..++++++.....+..++..+...+.++
T Consensus        71 ~~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~  111 (229)
T d1ojta1          71 ANGIKYPEPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVD  111 (229)
T ss_dssp             GGTCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred             hcCCcccCCcccHHHHHHHHHHHHHHHhcchHhHhhcCceE
Confidence            89998888999999999999999999999999999999998

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.89  E-value=4.5e-06  Score=76.95  Aligned_cols=86  Identities=13%  Similarity=0.095  Sum_probs=61.5

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEec
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITG  868 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id  868 (1074)
                      ++|+|||||+.|+.+|..+++     ++++..+...+.        ..+   .++...+.+.++..||+++.| .++.++
T Consensus        31 k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~--------~~d---~~~~~~~~~~l~~~gv~~~~~~~v~~i~   99 (123)
T d1nhpa2          31 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV--------YLD---KEFTDVLTEEMEANNITIATGETVERYE   99 (123)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT--------TCC---HHHHHHHHHHHHTTTEEEEESCCEEEEE
T ss_pred             CEEEEECChHHHHHHHHHhhccceEEEEEEecCccccc--------ccc---hhhHHHHHHHhhcCCeEEEeCceEEEEE
Confidence            349999999999999999998     677665543211        111   234455677888899999999 577776


Q ss_pred             CC-eEEEEeCCCCeeEEEcCeEEEcc
Q psy14927        869 PN-TVTVIKSDGSTEEVKTKNILIAT  893 (1074)
Q Consensus       869 ~~-~~~v~~~~G~~~~i~~d~lIIAT  893 (1074)
                      .+ ....++.+|  .++++|.||+|.
T Consensus       100 ~~~~~~~v~~dg--~~i~~D~vi~aI  123 (123)
T d1nhpa2         100 GDGRVQKVVTDK--NAYDADLVVVAV  123 (123)
T ss_dssp             CSSBCCEEEESS--CEEECSEEEECS
T ss_pred             cCCCEEEEEeCC--CEEECCEEEEEC
Confidence            43 333345677  589999999983

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=97.87  E-value=6.9e-07  Score=96.64  Aligned_cols=95  Identities=16%  Similarity=0.146  Sum_probs=67.9

Q ss_pred             HHHHHhCCCEEEeCceEEEEEecCC--------eEEEEEeeccCCCCceEEEcCEEEEccCCcccCCcc-----C-----
Q psy14927        955 QRILGKQGMQFKLGTKVTGASKSGD--------NITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNL-----G----- 1016 (1074)
Q Consensus       955 ~~~l~~~gV~i~~~~~v~~i~~~~~--------~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l-----~----- 1016 (1074)
                      .+.++..+++++.++.+..+..+++        .+.+...+.. +++...+.++.||+|+|--......     .     
T Consensus       145 ~~~~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~-~g~~~~~~ak~VilAtGG~~~~~~~~t~~~~~TGDG  223 (305)
T d1chua2         145 SKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRN-KETVETCHAKAVVLATGGASKVYQYTTNPDISSGDG  223 (305)
T ss_dssp             HHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETT-TTEEEEEECSEEEECCCCCGGGSSSBSCGGGCSCHH
T ss_pred             HHHHhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCC-CCcEEEEeecceEEeeeccccceeccCCCCceeccc
Confidence            4556778999999999888765432        2345444433 4556778999999999843211100     0     


Q ss_pred             ---ccccCcccCCCCCeeeCCCCCCCCCCEEEecccC
Q psy14927       1017 ---LEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCI 1050 (1074)
Q Consensus      1017 ---l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~ 1050 (1074)
                         ....|.++.+-++|.+|++.+|+.||+|++|+++
T Consensus       224 ~~mA~~aGa~l~~m~~iq~~~~g~t~~~g~~a~G~~~  260 (305)
T d1chua2         224 IAMAWRAGCRVANCGGVMVDDHGRTDVEGLYAIGEVS  260 (305)
T ss_dssp             HHHHHHTTCCEECSCEEECCTTCBCSSBTEEECGGGE
T ss_pred             EeeccccceeeEecceeEECCcccCCCCCceecccEE
Confidence               2346778888899999999999999999999974

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.86  E-value=8.9e-06  Score=82.92  Aligned_cols=102  Identities=41%  Similarity=0.695  Sum_probs=86.7

Q ss_pred             EEEeCCChhHHHHHHHHHHHcCCCHHHHhhhcccCCccccccccccCCcccccCCCchHHHhhcchhhHHhccCccccCC
Q psy14927        492 VHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARG  571 (1074)
Q Consensus       492 ~~iiG~~a~eli~~~a~a~~~~~~~~~l~~~~~~hPt~s~e~~~~~ggtc~n~GCvpkk~l~~aa~~~~~~~~~~a~~~G  571 (1074)
                      +.|||.+.+.+.. +..|.+.|+++            .-+|. ..+||+|+|.||+|++.++...+.....+.  +..++
T Consensus         6 viVIG~GpaGl~a-A~~aar~G~kV------------~vIEk-~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~   69 (223)
T d1ebda1           6 TLVVGAGPGGYVA-AIRAAQLGQKV------------TIVEK-GNLGGVCLNVGCIPSKALISASHRYEQAKH--SEEMG   69 (223)
T ss_dssp             EEEECCSHHHHHH-HHHHHHTTCCE------------EEEES-SCTTHHHHHTSHHHHHHHHHHHHHHHHHHT--CGGGT
T ss_pred             EEEECCCHHHHHH-HHHHHHCCCEE------------EEEec-CCCCcceeccccccccccccccchhhhhhh--hhhhc
Confidence            5689999988874 45555788754            33444 679999999999999999999988877765  66888


Q ss_pred             eeccCcccCHHHHHHHHHHHHHHHHHHHHHHhhhCccc
Q psy14927        572 IEVEGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKAL  609 (1074)
Q Consensus       572 ~~~~~~~~~w~~~~~~~~~~i~~l~~~~~~~l~~~~i~  609 (1074)
                      +......++|..++.+++.++..++.++..+++..+|+
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~V~  107 (223)
T d1ebda1          70 IKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVE  107 (223)
T ss_dssp             EECCSCEECHHHHHHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred             ccchhheeeHHHHhhHHHHHHHHHHhhHHHhhhcccee
Confidence            88888999999999999999999999999999999999

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=8.6e-06  Score=75.21  Aligned_cols=88  Identities=15%  Similarity=0.045  Sum_probs=61.6

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEec
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITG  868 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id  868 (1074)
                      ++|+|||||+.|+.+|..+++     ++++..+.....+         +   .++...+.+.+++.||+++.| +++.+.
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~~---------d---~~~~~~~~~~l~~~Gv~i~~~~~v~~i~   90 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSF---------D---SMISTNCTEELENAGVEVLKFSQVKEVK   90 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTS---------C---HHHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccccch---------h---hHHHHHHHHHHHHCCCEEEeCCEEEEEE
Confidence            349999999999999999998     6676665442221         1   334455778888899999999 566663


Q ss_pred             --CCeEEEEe---CCCC----eeEEEcCeEEEccC
Q psy14927        869 --PNTVTVIK---SDGS----TEEVKTKNILIATG  894 (1074)
Q Consensus       869 --~~~~~v~~---~~G~----~~~i~~d~lIIATG  894 (1074)
                        .+.+.+..   ..|.    ...+.+|.||+|||
T Consensus        91 ~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          91 KTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             EETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             EcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence              44444432   3332    13578999999998

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.84  E-value=1.4e-05  Score=73.38  Aligned_cols=86  Identities=14%  Similarity=0.156  Sum_probs=58.2

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEec-
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITG-  868 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id-  868 (1074)
                      +++|||||+.|+..|..+++     ++++.. ..         .+..+   .++...+.+.+++.||+|++| +++.+. 
T Consensus        22 ~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~-~~---------l~~~D---~~~~~~l~~~l~~~Gv~i~~~~~v~~~~~   88 (122)
T d1h6va2          22 KTLVVGASYVALECAGFLAGIGLDVTVMVRS-IL---------LRGFD---QDMANKIGEHMEEHGIKFIRQFVPTKIEQ   88 (122)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESS-SS---------STTSC---HHHHHHHHHHHHHTTEEEEESCEEEEEEE
T ss_pred             eEEEECCCccHHHHHHHHhhcCCeEEEEEec-hh---------hccCC---HHHHHHHHHHHHHCCCEEEECCEEEEEEE
Confidence            49999999999999999999     555432 11         11111   345566788899999999999 455542 


Q ss_pred             -----CCeEEEEeCC---CCeeEEEcCeEEEccC
Q psy14927        869 -----PNTVTVIKSD---GSTEEVKTKNILIATG  894 (1074)
Q Consensus       869 -----~~~~~v~~~~---G~~~~i~~d~lIIATG  894 (1074)
                           .....++...   ++...+.+|.|++|+|
T Consensus        89 ~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          89 IEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             EECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             ecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence                 1234444432   2224578999999998

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.81  E-value=0.0012  Score=70.05  Aligned_cols=111  Identities=12%  Similarity=0.022  Sum_probs=69.7

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhCh------
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDY------   79 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~------   79 (1074)
                      ....|++++|+++|+++-.....-+.     +..          ...+...|..+...|++++|.++|.++-..      
T Consensus        22 ~~~~g~~~~A~~~~~~aL~~~~~~~~-----~~~----------~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~   86 (366)
T d1hz4a_          22 AINDGNPDEAERLAKLALEELPPGWF-----YSR----------IVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV   86 (366)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCCTTCH-----HHH----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHCCCHHHHHHHHHHHHhhCcCCCc-----HHH----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence            45789999999999887533211000     000          124556788899999999999999875332      


Q ss_pred             --------hhhhhHhhccCCHHHHHHHHHhc-------C---Ch---HHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927         80 --------LSMVRVLCFLQDFSRAAELANAS-------G---DT---AAAYHLARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus        80 --------~~~vr~l~~~~~~~~a~~i~~~~-------~---~~---~~~~~la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                              .....++...|++..+.......       .   ..   .....+|..+...|+++.|...|.++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~  159 (366)
T d1hz4a_          87 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG  159 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHH
Confidence                    22333456677777776655421       1   11   13446778888888888888877543

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.76  E-value=1.7e-05  Score=72.78  Aligned_cols=86  Identities=10%  Similarity=0.143  Sum_probs=61.5

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEec
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITG  868 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id  868 (1074)
                      ++++|||||+.|+.+|..+++     ++++..+.....++            .++...+...+++.||+++++ +++.+.
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~~d------------~ei~~~l~~~l~~~GV~i~~~~~v~~v~   91 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMD------------GEVAKATQKFLKKQGLDFKLSTKVISAK   91 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSSC------------HHHHHHHHHHHHHTTCEEECSEEEEEEE
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchhhh------------hhhHHHHHHHHHhccceEEeCCEEEEEE
Confidence            349999999999999999999     67777665533221            334455678888899999999 466553


Q ss_pred             C----CeEEEEeCC---CCeeEEEcCeEEEc
Q psy14927        869 P----NTVTVIKSD---GSTEEVKTKNILIA  892 (1074)
Q Consensus       869 ~----~~~~v~~~~---G~~~~i~~d~lIIA  892 (1074)
                      .    ..+.+++.+   ++..++.+|.|++|
T Consensus        92 ~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          92 RNDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             EETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             EeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            2    234455433   34467999999997

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=6.6e-05  Score=72.35  Aligned_cols=70  Identities=16%  Similarity=0.311  Sum_probs=52.5

Q ss_pred             EEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927        932 VTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus       932 Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
                      ++++..........+...........++..||++++++.+.++++  +++.+.  .   +|+.++++||+||+|+|+
T Consensus        92 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~--~gv~~~--~---~g~e~~i~aD~Vv~A~Gq  161 (162)
T d1ps9a2          92 IVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDD--DGLHVV--I---NGETQVLAVDNVVICAGQ  161 (162)
T ss_dssp             EEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEET--TEEEEE--E---TTEEEEECCSEEEECCCE
T ss_pred             EEEEEeccchhccccchhhhHHHHHHHhhCCeEEEeeeEEEEEcC--CCCEEe--c---CCeEEEEECCEEEECCCC
Confidence            455544443333566777778888999999999999999999976  555443  2   355678999999999996

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.67  E-value=3e-05  Score=71.21  Aligned_cols=86  Identities=5%  Similarity=0.028  Sum_probs=62.0

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEec-
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITG-  868 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id-  868 (1074)
                      +++|||||+.|+..|..+++     |+++..+.....++            .++...+.+.+++.||++++| ++..++ 
T Consensus        27 ~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~~d------------~~~~~~l~~~l~~~GI~i~~~~~v~~i~~   94 (123)
T d1dxla2          27 KLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMD------------AEIRKQFQRSLEKQGMKFKLKTKVVGVDT   94 (123)
T ss_dssp             EEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSC------------HHHHHHHHHHHHHSSCCEECSEEEEEEEC
T ss_pred             eEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCchhh------------hcchhhhhhhhhcccceEEcCCceEEEEE
Confidence            49999999999999999999     77777665532221            334445678888899999999 466665 


Q ss_pred             -CCeEEEE--e-CCCCeeEEEcCeEEEcc
Q psy14927        869 -PNTVTVI--K-SDGSTEEVKTKNILIAT  893 (1074)
Q Consensus       869 -~~~~~v~--~-~~G~~~~i~~d~lIIAT  893 (1074)
                       .+.++++  . ++|+..++.+|.|++|.
T Consensus        95 ~~~~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          95 SGDGVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             SSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             ccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence             3444443  3 35555679999999983

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=97.67  E-value=6.7e-05  Score=79.20  Aligned_cols=69  Identities=16%  Similarity=0.300  Sum_probs=52.3

Q ss_pred             CHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccC
Q psy14927        947 DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKD 1025 (1074)
Q Consensus       947 ~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld 1025 (1074)
                      +..+...+.+.+++.|++++.++.|.+|..+++++.|.+.+       .++.+|.||+|+|.-.+. +  +..+|+...
T Consensus       149 p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~V~t~~-------g~i~a~~VViAaG~~s~~-l--~~~lg~~~~  217 (281)
T d2gf3a1         149 SENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETAN-------GSYTADKLIVSMGAWNSK-L--LSKLNLDIP  217 (281)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETT-------EEEEEEEEEECCGGGHHH-H--GGGGTEECC
T ss_pred             ccccccccccccccccccccCCcEEEEEEEECCEEEEEECC-------cEEEcCEEEECCCCcchh-h--HHhcCCccc
Confidence            35667778888899999999999999999888877766433       369999999999964332 2  455666543

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=0.00019  Score=65.85  Aligned_cols=83  Identities=12%  Similarity=0.208  Sum_probs=67.6

Q ss_pred             hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEcC
Q psy14927        922 GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCD 1000 (1074)
Q Consensus       922 A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D 1000 (1074)
                      |..|.+.+.+||+++|++.+.   .++...+.+.+.....+|.+++++.+.++.+++.+ ..|++.+...+++.+++++|
T Consensus        43 A~~L~~~a~~V~li~r~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~G~~~~v~~v~l~~~~~~e~~~~l~~d  119 (126)
T d1trba2          43 ALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVA  119 (126)
T ss_dssp             HHHHTTTSSEEEEECSSSSCC---CCHHHHHHHHHHHHTSSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECS
T ss_pred             HHHHhhcCCcEEEEeeccccc---chhHHHHHHHHhhcccceeEecceEEEEEECCCCceEEEEEEECCCCceEEEEECC
Confidence            889999999999999998764   46777788888888899999999999999997653 56777774312234689999


Q ss_pred             EEEEccC
Q psy14927       1001 ALLVCVG 1007 (1074)
Q Consensus      1001 ~vi~a~G 1007 (1074)
                      .||+++|
T Consensus       120 gvFv~iG  126 (126)
T d1trba2         120 GLFVAIG  126 (126)
T ss_dssp             EEEECSC
T ss_pred             EEEEEeC
Confidence            9999987

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.61  E-value=2.5e-05  Score=79.62  Aligned_cols=110  Identities=39%  Similarity=0.651  Sum_probs=87.1

Q ss_pred             EEEeCCChhHHHHHHHHHHHcCCCHHHHhhhcccCCccccccccccCCcccccCCCchHHHhhcchhhHHhccCccccCC
Q psy14927        492 VHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARG  571 (1074)
Q Consensus       492 ~~iiG~~a~eli~~~a~a~~~~~~~~~l~~~~~~hPt~s~e~~~~~ggtc~n~GCvpkk~l~~aa~~~~~~~~~~a~~~G  571 (1074)
                      +.|||.+.+.+.. +..|.+.|+++.-+.....+.      ....+||+|+|+||.|++.+.......+.... ..+..|
T Consensus         6 viIIGgGpAGl~a-A~~aar~G~~V~viE~~~~~~------~~~~~gg~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~g   77 (229)
T d3lada1           6 VIVIGAGPGGYVA-AIKSAQLGLKTALIEKYKGKE------GKTALGGTCLNVGCIPSKALLDSSYKFHEAHE-SFKLHG   77 (229)
T ss_dssp             EEEECCSHHHHHH-HHHHHHHTCCEEEEECCBCTT------SSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHT-TSGGGT
T ss_pred             EEEECcCHHHHHH-HHHHHHCCCeEEEEecccCCC------ccccccccccccccchhhhhhhhhhhhhhhhh-hhhhcc
Confidence            6789999999985 455557887654332211111      13468999999999999999988877776653 366789


Q ss_pred             eeccCcccCHHHHHHHHHHHHHHHHHHHHHHhhhCccc
Q psy14927        572 IEVEGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKAL  609 (1074)
Q Consensus       572 ~~~~~~~~~w~~~~~~~~~~i~~l~~~~~~~l~~~~i~  609 (1074)
                      +......+||+.+..+++.++..++.++..+++..+|+
T Consensus        78 i~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~gV~  115 (229)
T d3lada1          78 ISTGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVT  115 (229)
T ss_dssp             EECSCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCE
T ss_pred             cccCcceeecchhhhhhhHHHHHhhhhHHHHhhcCCeE
Confidence            98888999999999999999999999999999999999

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=0.00018  Score=66.07  Aligned_cols=80  Identities=13%  Similarity=0.216  Sum_probs=62.3

Q ss_pred             hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEcC
Q psy14927        922 GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCD 1000 (1074)
Q Consensus       922 A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D 1000 (1074)
                      |..|.+...+||+++|++.+..   .+..   ..+.....+|++++++.+.++.++++. ..+++.+.. +|+.+++++|
T Consensus        46 A~~L~~~a~~V~li~r~~~~~~---~~~~---~~~~~~~~~I~v~~~~~v~~i~G~~~~v~~v~l~~~~-tge~~~l~vd  118 (126)
T d1fl2a2          46 AIDLAGIVEHVTLLEFAPEMKA---DQVL---QDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRV-SGDIHNIELA  118 (126)
T ss_dssp             HHHHHTTBSEEEEECSSSSCCS---CHHH---HHHHHTCTTEEEESSEEEEEEEESSSSEEEEEEEETT-TCCEEEEECS
T ss_pred             HHhhhccCCceEEEeccccccc---cccc---ccccccccceeEEcCcceEEEEccccceeeEEEEECC-CCCEEEEECC
Confidence            8889999999999999987652   2322   223334567999999999999997544 567887755 6778899999


Q ss_pred             EEEEccCC
Q psy14927       1001 ALLVCVGR 1008 (1074)
Q Consensus      1001 ~vi~a~G~ 1008 (1074)
                      .||+++|.
T Consensus       119 gvFv~IGl  126 (126)
T d1fl2a2         119 GIFVQIGL  126 (126)
T ss_dssp             EEEECSCE
T ss_pred             EEEEEeCC
Confidence            99999984

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.56  E-value=0.00018  Score=75.38  Aligned_cols=102  Identities=17%  Similarity=0.113  Sum_probs=66.4

Q ss_pred             hCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCC
Q psy14927        960 KQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTV 1039 (1074)
Q Consensus       960 ~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts 1039 (1074)
                      ..++.+..++.++.+..+++++.+.+.+.+  ++.+++.+|++|.|-|........    .    ...............
T Consensus       118 ~~~~~~~~~~~v~~~~~~~~~v~v~~~~g~--~~~~~~~ad~vi~ADG~~S~vr~~----~----~~~~~~~~~~~~~~~  187 (288)
T d3c96a1         118 LGQQAVRTGLGVERIEERDGRVLIGARDGH--GKPQALGADVLVGADGIHSAVRAH----L----HPDQRPLRDPLPHWG  187 (288)
T ss_dssp             HCTTSEEESEEEEEEEEETTEEEEEEEETT--SCEEEEEESEEEECCCTTCHHHHH----H----CTTCCCCCCCCSCCC
T ss_pred             ccCeeeecCcEEEEeeecCCcEEEEEEcCC--CCeEEEeeceeeccCCccceeeee----e----ccccccccccccccc
Confidence            457888899999999988888888888733  556789999999999976432210    0    000000001111235


Q ss_pred             CCCEEEecccCCC-----CCcHHHHHHHHHHHHHHhh
Q psy14927       1040 IPNIFAIGDCIHG-----PMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1040 ~~~IyAiGD~~~~-----~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                      ...+..+||+++.     ...+..|+.++...+..+.
T Consensus       188 ~~~~~~~gda~h~~~p~~g~G~~~ai~d~~~l~~~l~  224 (288)
T d3c96a1         188 RGRITLLGDAAHLMYPMGANGASQAILDGIELAAALA  224 (288)
T ss_dssp             BTTEEECTHHHHCCCSSTTCTHHHHHHHHHHHHHHHH
T ss_pred             cCcceecccccceeCCccccchhhhhhhHHHHHHHHh
Confidence            5679999999863     2236677888877776553

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=0.0093  Score=62.69  Aligned_cols=70  Identities=13%  Similarity=0.031  Sum_probs=49.8

Q ss_pred             HHHHHhHHHHhhcCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhcCChHHHhhHHHHHHHHHhh
Q psy14927        275 YVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGNYEKGLGALNEAKRCLLK  349 (1074)
Q Consensus       275 ~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  349 (1074)
                      +...+... ...|+|+.|...+..++....+.+....   .......+..+|.. .|+++.|.+.|.++-...++
T Consensus       254 ~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~la~~~~~-~g~~~~A~~~l~~Al~l~~~  323 (366)
T d1hz4a_         254 WRNIARAQ-ILLGEFEPAEIVLEELNENARSLRLMSD---LNRNLLLLNQLYWQ-AGRKSDAQRVLLDALKLANR  323 (366)
T ss_dssp             HHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHcCCHHHHHHHHHHHHHHHhhcccChH---HHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHhhh
Confidence            34456666 6789999999999999988887654221   11222345667777 79999999999998765444

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.54  E-value=2.9e-05  Score=78.86  Aligned_cols=104  Identities=50%  Similarity=0.831  Sum_probs=86.7

Q ss_pred             EEEeCCChhHHHHHHHHHHHcCCCHHHHhhhcccCCccccccccccCCcccccCCCchHHHhhcchhhHHhccCccccCC
Q psy14927        492 VHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARG  571 (1074)
Q Consensus       492 ~~iiG~~a~eli~~~a~a~~~~~~~~~l~~~~~~hPt~s~e~~~~~ggtc~n~GCvpkk~l~~aa~~~~~~~~~~a~~~G  571 (1074)
                      +.|||.+.+.+.. +..+.+.|.++            .-++....+||+|++.||+|++.+...+........ .+..+|
T Consensus         6 vvVIGgGpaGl~a-A~~aa~~G~kV------------~vie~~~~~GG~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~g   71 (221)
T d1dxla1           6 VVIIGGGPGGYVA-AIKAAQLGFKT------------TCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKH-SFANHG   71 (221)
T ss_dssp             EEEECCSHHHHHH-HHHHHHHTCCE------------EEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHH-THHHHT
T ss_pred             EEEECCCHHHHHH-HHHHHHCCCcE------------EEEEecCCCCCeeecchhhhhhhhhHhHHHHHHHhh-hhhhcC
Confidence            6789999999884 44555778754            344555689999999999999999998877666543 367889


Q ss_pred             eeccCcccCHHHHHHHHHHHHHHHHHHHHHHhhhCccc
Q psy14927        572 IEVEGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKAL  609 (1074)
Q Consensus       572 ~~~~~~~~~w~~~~~~~~~~i~~l~~~~~~~l~~~~i~  609 (1074)
                      +......+.|.....+++..+..++.++..+++..+|+
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  109 (221)
T d1dxla1          72 VKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVT  109 (221)
T ss_dssp             EEESCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCE
T ss_pred             eecccceecHHHHHHHHHHHHHHHhhHHHHhhhcCCeE
Confidence            98888999999999999999999999999999999999

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.49  E-value=6e-05  Score=78.91  Aligned_cols=93  Identities=14%  Similarity=0.204  Sum_probs=64.4

Q ss_pred             EEEEEeCCChhHHHHHHHHHHHcCCCHHHHhhhcccCCccccccccccCCcccccCCCchHHHhhcchhhHHhccCcccc
Q psy14927        490 LGVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKA  569 (1074)
Q Consensus       490 lG~~iiG~~a~eli~~~a~a~~~~~~~~~l~~~~~~hPt~s~e~~~~~ggtc~n~GCvpkk~l~~aa~~~~~~~~~~a~~  569 (1074)
                      ..+.|||.+++.+.. +..+.+.|.++            ..++....+||+|+|+||+|+|++..+++.....+.. ...
T Consensus        43 yDvvVIGgG~aG~~a-A~~~a~~G~kv------------~vve~~~~lGG~c~n~GcvP~k~l~~~a~~~~~~~~~-~~~  108 (261)
T d1mo9a1          43 YDAIFIGGGAAGRFG-SAYLRAMGGRQ------------LIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTF-SGQ  108 (261)
T ss_dssp             BSEEEECCSHHHHHH-HHHHHHTTCCE------------EEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHT-TTS
T ss_pred             CCEEEECCCHHHHHH-HHHHHHCCCeE------------EEEeccCccccccccccccchHHHHhhHHhHHHHHHh-hhh
Confidence            346789999998884 44555677644            3345556789999999999999999999888776542 223


Q ss_pred             CCee-ccCcccCHHHHHHHHHHHHHHHH
Q psy14927        570 RGIE-VEGVKLNLETMMGTKSAAVKALT  596 (1074)
Q Consensus       570 ~G~~-~~~~~~~w~~~~~~~~~~i~~l~  596 (1074)
                      +++. .....++|...+......+..+.
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (261)
T d1mo9a1         109 YWFPDMTEKVVGIKEVVDLFRAGRNGPH  136 (261)
T ss_dssp             TTCCCCTTCCCCHHHHHHHHHHHTHHHH
T ss_pred             ccccccccccccHHHHHHHHHHHHHhhh
Confidence            3332 23466888877766655555544

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.44  E-value=6.6e-06  Score=82.14  Aligned_cols=95  Identities=17%  Similarity=0.055  Sum_probs=57.1

Q ss_pred             chhhhhhccccchHHHHHHHhh------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEe
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKIT  867 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~i  867 (1074)
                      +++|+||||||+||+||++|++      ++||+.+..++............   ..+...........+..+.....  +
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--v   78 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLP---YDVVNFEIELMKDLGVKIICGKS--L   78 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSC---HHHHHHHHHHHHTTTCEEEESCC--B
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhhhccccccc---cccccchhhhhhccceeEEeeEE--e
Confidence            4559999999999999999998      68999998887654332222211   22222333444455666666521  1


Q ss_pred             cCCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        868 GPNTVTVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       868 d~~~~~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                      ......  ..++  .+..++.++||+|..+
T Consensus        79 ~~~~~~--~~~~--~~~~~~~~~ia~g~~~  104 (196)
T d1gtea4          79 SENEIT--LNTL--KEEGYKAAFIGIGLPE  104 (196)
T ss_dssp             STTSBC--HHHH--HHTTCCEEEECCCCCE
T ss_pred             ccceee--eehh--hccccceeeEEecccc
Confidence            111110  0111  2355899999999753

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=97.39  E-value=0.00011  Score=77.07  Aligned_cols=66  Identities=14%  Similarity=0.211  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcc
Q psy14927        948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIE 1023 (1074)
Q Consensus       948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ 1023 (1074)
                      ..+...+.+.+++.|++++.++.|++|..+++.+.|++.+       .++.||.||+|+|.-... +  +..+|+.
T Consensus       151 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~-------g~i~a~~vV~AaG~~s~~-l--~~~~G~~  216 (276)
T d1ryia1         151 YFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPS-------GDVWANHVVVASGVWSGM-F--FKQLGLN  216 (276)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETT-------EEEEEEEEEECCGGGTHH-H--HHHTTCC
T ss_pred             ccchhHHHHHHHHcCCEEecceEEEeEEeecceEEEecCC-------eEEEcCEEEECCCccHHH-H--HhhcCCC
Confidence            4566677788899999999999999999877777776543       369999999999964322 1  3445554

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.38  E-value=4.6e-05  Score=74.90  Aligned_cols=101  Identities=17%  Similarity=0.208  Sum_probs=63.4

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhh---HHHhhhhhhHHHHhhhCCeEEEee-eEE
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKS---AAVKALTGGIAHLFKSNKVTQLNG-HGK  865 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~---~~~~~l~~~~~~~l~~~gV~~~~g-~v~  865 (1074)
                      ++||||||||+|+.+|..+++     ++++..+..........+.....   .................++.+..+ .++
T Consensus         4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (185)
T d1q1ra1           4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQVT   83 (185)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCEE
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhcccceeeeccceee
Confidence            459999999999999999988     34444333322222211111110   000111222344455667787777 466


Q ss_pred             EecCCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        866 ITGPNTVTVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       866 ~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                      .++.....+...++  .++.+|.+|+++|..|
T Consensus        84 ~~~~~~~~v~~~~~--~~i~~d~~i~~~G~~~  113 (185)
T d1q1ra1          84 AINRDRQQVILSDG--RALDYDRLVLATGGRP  113 (185)
T ss_dssp             EEETTTTEEEETTS--CEEECSEEEECCCEEE
T ss_pred             eecccccEEEeece--eEEEeeeeeeeeeccc
Confidence            67766667777777  6899999999999876

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.37  E-value=0.00036  Score=64.16  Aligned_cols=78  Identities=18%  Similarity=0.241  Sum_probs=61.3

Q ss_pred             hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCC---eEEEEEeeccCCCCceEEE
Q psy14927        922 GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGD---NITVTIENVKDPTKKEELS  998 (1074)
Q Consensus       922 A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~---~~~v~~~~~~~~g~~~~i~  998 (1074)
                      |.+|++...+||+++|++.+..   .+..   +.+.+...+|++++++.+.++.+++.   ...+.+++.. +++.++++
T Consensus        50 A~~L~~~a~~V~li~r~~~~ra---~~~~---~~~l~~~~nI~v~~~~~v~~i~Gd~~~~~v~~v~l~~~~-tge~~~l~  122 (130)
T d1vdca2          50 ANFLTKYGSKVYIIHRRDAFRA---SKIM---QQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVV-TGDVSDLK  122 (130)
T ss_dssp             HHHHTTTSSEEEEECSSSSCCS---CHHH---HHHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETT-TCCEEEEE
T ss_pred             HHHHhCCCCcEEEEEecccccc---chhh---hhccccCCceEEEeccEEEEEEccCCcccEEEEEEEECC-CCCEEEEE
Confidence            8899999999999999988762   3332   33445667799999999999998753   2457777755 68889999


Q ss_pred             cCEEEEcc
Q psy14927        999 CDALLVCV 1006 (1074)
Q Consensus       999 ~D~vi~a~ 1006 (1074)
                      +|.|++++
T Consensus       123 ~dGvFVaI  130 (130)
T d1vdca2         123 VSGLFFAI  130 (130)
T ss_dssp             CSEEEECS
T ss_pred             CCEEEEEC
Confidence            99999975

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=0.001  Score=70.66  Aligned_cols=51  Identities=12%  Similarity=-0.005  Sum_probs=31.4

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHh
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEA   76 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a   76 (1074)
                      +..+|++++|+..|+++-..+                    ++++..|..+|..+...|++++|.++|.++
T Consensus        63 ~~~~~~~~~A~~~~~~al~~~--------------------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~  113 (323)
T d1fcha_          63 QAENEQELLAISALRRCLELK--------------------PDNQTALMALAVSFTNESLQRQACEILRDW  113 (323)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC--------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHcCChHHHHHHHHhhhccc--------------------cccccccccccccccccccccccccchhhH
Confidence            345677777777777764322                    344556666666666666666666666554

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.34  E-value=0.0087  Score=63.19  Aligned_cols=68  Identities=10%  Similarity=0.159  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHhcCCCCCChhHHHHHHHHHHcc-----CCHHHHHHHHHHHHhHHHHhhcCHHHHHHHHHHHHHHHHhcC
Q psy14927        233 KEIYVMAANYLQSSDWKSQPELLKSIISFYSKG-----KAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHN  307 (1074)
Q Consensus       233 ~~l~~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~-----~~~~~aa~~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~  307 (1074)
                      .++|...++|+...   ++.   .++-.+|.++     -..++...++..-.+-| +.+|+...+.++++.+.+.+.+..
T Consensus       203 ~~~w~~y~~~~~~~---g~~---~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE-~~~G~~~~~~~~~~r~~~~~~~~~  275 (308)
T d2onda1         203 PEYVLAYIDYLSHL---NED---NNTRVLFERVLTSGSLPPEKSGEIWARFLAFE-SNIGDLASILKVEKRRFTAFREEY  275 (308)
T ss_dssp             HHHHHHHHHHHHTT---CCH---HHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHH-HHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred             HHHHHHHHHHHHHc---CCh---HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHCcccc
Confidence            45566666666554   222   2333333332     22234455666677779 999999999999888888776543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=0.00037  Score=62.86  Aligned_cols=89  Identities=18%  Similarity=0.141  Sum_probs=72.7

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhh
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVR   84 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr   84 (1074)
                      .+...|++++|+.+|.++-..+                    ++++.+|...|..+...|++++|+++|.++=..     
T Consensus        12 ~~~~~g~~~eAi~~~~~al~~~--------------------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----   66 (117)
T d1elwa_          12 KALSVGNIDDALQCYSEAIKLD--------------------PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-----   66 (117)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC--------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----
T ss_pred             HHHHcCCHHHHHHHHHHHHhcC--------------------CcchhhhhcccccccccccccccchhhhhHHHh-----
Confidence            4667899999999999886333                    567889999999999999999999888765444     


Q ss_pred             HhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHhCCh
Q psy14927         85 VLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSC  134 (1074)
Q Consensus        85 ~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~  134 (1074)
                                      .+++..+.+.+|..|...|++++|+.+|.++-..
T Consensus        67 ----------------~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~  100 (117)
T d1elwa_          67 ----------------KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH  100 (117)
T ss_dssp             ----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             ----------------ccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence                            2457778999999999999999999998876543

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.29  E-value=0.00094  Score=73.53  Aligned_cols=115  Identities=14%  Similarity=0.062  Sum_probs=59.1

Q ss_pred             HHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeecc----CC-------CCceEEEcCEEEEccCCcccCCccCccccCc
Q psy14927        954 FQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVK----DP-------TKKEELSCDALLVCVGRRPYTHNLGLEEIGI 1022 (1074)
Q Consensus       954 ~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~----~~-------g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl 1022 (1074)
                      +.+..+..|+.+..+..+.++..+++++........    ..       ........+..+++.|.+....---+....+
T Consensus       147 l~~~Ae~~g~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~~G~l~k~li~~~~l  226 (380)
T d2gmha1         147 MGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKFDL  226 (380)
T ss_dssp             HHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHHHHHTTT
T ss_pred             HHHHHhhccceeeeecceeeeeeccCCceeecccccccccccccccccccccccccccEEEEeeeCCCcchHHHHhhhhh
Confidence            334455666777766666666554333111111000    00       0123456778888888654321000111111


Q ss_pred             c--cCC-CCCeeeCCCCCCCCCCEEEecccCCC-----CCcHHHHHHHHHHHHHHhh
Q psy14927       1023 E--KDE-KGRVPVNSRFQTVIPNIFAIGDCIHG-----PMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus      1023 ~--ld~-~G~I~Vd~~~~ts~~~IyAiGD~~~~-----~~~~~~A~~~G~~aA~~I~ 1071 (1074)
                      .  ... .|+-.   --+...||+..+||+++.     ..-++.|+..|..||..|.
T Consensus       227 ~~~~~~~~G~~s---ip~l~~~G~lLVGDAAG~vnP~~g~GI~~Am~SG~lAAeai~  280 (380)
T d2gmha1         227 RANCEPQGGFQS---IPKLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGTLAAESIF  280 (380)
T ss_dssp             TTTSCCCCGGGG---CCCCEETTEEECTTTTCCCBTTTTBCHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccc---ccccccCCeeEEeccccccchhhcCCeeeeeccHHHHHHHHH
Confidence            1  111 11100   012457899999999874     2347899999999999875

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=97.27  E-value=5.7e-05  Score=78.77  Aligned_cols=101  Identities=11%  Similarity=0.084  Sum_probs=60.9

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccccc----cccch-hh-h--hhhh---hHHH----h------------
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKG----VKLNL-ET-M--MGTK---SAAV----K------------  842 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g----~~~~~-~~-~--~~~~---~~~~----~------------  842 (1074)
                      ++|+||||||+|+++|+.|++     ++||+.+..+    ..+.+ +. .  ....   ....    .            
T Consensus         5 ~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~   84 (265)
T d2voua1           5 DRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTGER   84 (265)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTCCE
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEeccCCce
Confidence            349999999999999999999     8999865432    11100 00 0  0000   0000    0            


Q ss_pred             -----------hhhhhHHHHh-hhCCeEEEee-eEEEec--CCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        843 -----------ALTGGIAHLF-KSNKVTQLNG-HGKITG--PNTVTVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       843 -----------~l~~~~~~~l-~~~gV~~~~g-~v~~id--~~~~~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                                 .....+...+ ...++.++.+ .++.++  .+.++++++||  .++++|.+|.|.|...
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~dG--~~~~~d~~v~adG~~s  152 (265)
T d2voua1          85 VGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDG--TKAEANWVIGADGGAS  152 (265)
T ss_dssp             EEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTS--CEEEESEEEECCCTTC
T ss_pred             ecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCceEEEECCC--CEEEEEEEeccccccc
Confidence                       0000011111 2346777777 455554  56788889999  6899999999999764

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.25  E-value=0.00083  Score=72.23  Aligned_cols=151  Identities=14%  Similarity=0.190  Sum_probs=95.5

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHhhCHHHHHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHHHhcCCHH----------
Q psy14927        627 LKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFD----------  696 (1074)
Q Consensus       627 ~~~~a~~~e~~~~~~~A~~~y~~ag~~~~ai~~~~~~~~~~~a~~v~~~~~~~~~~~~~A~~~~~~g~~~----------  696 (1074)
                      ...-|+.+.+.|.|+.|..+|...+++++++.+|+++++|+.|++.++..++.+.-+.+...+.+.....          
T Consensus        17 ~~~i~~~c~~~~lye~A~~lY~~~~d~~rl~~~~v~l~~~~~avd~~~k~~~~~~~k~~~~~l~~~~e~~la~i~~~~~~   96 (336)
T d1b89a_          17 IQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIV   96 (336)
T ss_dssp             ------------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhCCCHHHHHHHHHhhccHHHHHHHHHHcCCHHHHHHHHHHHHhCcHHHHHHHHHHHhh
Confidence            3456888999999999999999999999999999999999999999998888888777777777665533          


Q ss_pred             -------HHHHHHHHcCCHHHHHHH-----------hccHHHHHHHHHHhCCcccHHHHHH---------HHHHHHHcCC
Q psy14927        697 -------EAIHFYSVAGSCGNAVRL-----------CGQLDAVESIASELNVQSDQDLILK---------CASYFARREH  749 (1074)
Q Consensus       697 -------~A~~~~~kag~~~~Av~m-----------a~~w~~a~~~A~~~~~~~~~~~~~~---------~a~~~~~~~~  749 (1074)
                             ..+..|...|.+++.+..           .+.+.+...+.-++.|+...+-+..         ..+.+...+.
T Consensus        97 ~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~~kl~e~l~~~s~~y~~~k~~~~c~~~~l  176 (336)
T d1b89a_          97 VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHL  176 (336)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTC
T ss_pred             cCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhChHHHHHHHHhccccCCHHHHHHHHHHcCC
Confidence                   245555555655555544           1122233333333333222221111         1222256667


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHcCCCC
Q psy14927        750 HDRAVQMYAIARRYDQALSLIQTKHVPL  777 (1074)
Q Consensus       750 ~~~Ai~~y~~ag~~~~Ai~~~~~~~~~~  777 (1074)
                      +.+++-+|.+.++|+.|+.++.+..++.
T Consensus       177 ~~elv~Ly~~~~~~~~A~~~~i~~~~~~  204 (336)
T d1b89a_         177 WAELVFLYDKYEEYDNAIITMMNHPTDA  204 (336)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHSTTTT
T ss_pred             hHHHHHHHHhcCCHHHHHHHHHHcchhh
Confidence            7788889999999999999888887754

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.25  E-value=0.00037  Score=71.15  Aligned_cols=58  Identities=16%  Similarity=0.172  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEecCC--eEEEEEeeccCCCCceEEEcCEEEEccCCccc
Q psy14927        948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSGD--NITVTIENVKDPTKKEELSCDALLVCVGRRPY 1011 (1074)
Q Consensus       948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~--~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~ 1011 (1074)
                      ..+.+.+.+.+++.|++|++++.|++|..+++  .+.....+      ++++.||.||....+.|+
T Consensus       236 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~------g~~~~ad~VI~~~s~~~~  295 (297)
T d2bcgg1         236 GELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTK------LGTFKAPLVIADPTYFPE  295 (297)
T ss_dssp             THHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEET------TEEEECSCEEECGGGCGG
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEEEcC------CEEEECCEEEEChhhccC
Confidence            45677888899999999999999999975433  23332333      468999999986555553

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=97.24  E-value=0.00017  Score=78.17  Aligned_cols=61  Identities=8%  Similarity=-0.037  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEecC-Ce-EEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927        948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSG-DN-ITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus       948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~-~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
                      ..+...+.+..++.+|+++..+.+..+...+ +. +.+...+.. +|+...+.++.||+|+|--
T Consensus       143 ~~i~~~L~~~~~~~~v~~~~~~~~~~l~~~~~~~~~g~~~~~~~-~g~~~~~~a~~vIlAtGG~  205 (330)
T d1neka2         143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIE-TGEVVYFKARATVLATGGA  205 (330)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEEETT-TCCEEEEEESCEEECCCCC
T ss_pred             HHHHHHHHHHHHhcCCeEEEEEEEEEeeeeccccceeeeeEEcc-CCcEEEEeccEEEEcCCCc
Confidence            4566666777788999999998888875532 32 222222322 5777889999999999843

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.22  E-value=8.3e-05  Score=73.04  Aligned_cols=98  Identities=18%  Similarity=0.228  Sum_probs=60.1

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhccccccccc----hhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEE
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLN----LETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGK  865 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~----~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~  865 (1074)
                      +|+||||||+|++||+++++     +++++.  .|+.+.    ...++.........+...+..+....++++..+ .+.
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSAS   80 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSS--TTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEE
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEe--cCCcccccccceeccccchhhhHHHHHHHHHHhhheeceeeccceee
Confidence            49999999999999999998     567653  333321    111111111111334444566677788888776 344


Q ss_pred             EecC-----CeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        866 ITGP-----NTVTVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       866 ~id~-----~~~~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                      .+.+     ........++  .++..+.+++++|..+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~  115 (184)
T d1fl2a1          81 KLIPAAVEGGLHQIETASG--AVLKARSIIVATGAKL  115 (184)
T ss_dssp             EEECCSSTTCCEEEEETTS--CEEEEEEEEECCCEEE
T ss_pred             eecccccccceeeeeeecc--eeeecccccccccccc
Confidence            4322     2233344444  5799999999999764

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.17  E-value=0.00027  Score=69.80  Aligned_cols=137  Identities=19%  Similarity=0.204  Sum_probs=90.1

Q ss_pred             hhHHhhcCC-cEEEEecCCccCC--------CCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCC
Q psy14927        922 GSVWGRLGA-EVTAIEFMNAIGG--------MGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPT  992 (1074)
Q Consensus       922 A~~l~~~G~-~Vtlv~~~~~~~~--------~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g  992 (1074)
                      |..|+++|. +|+|+++++.+..        ..................++.+.....+.....       ...+     
T Consensus        20 A~~l~~~G~~~V~v~E~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~-----   87 (196)
T d1gtea4          20 ASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENEI-------TLNT-----   87 (196)
T ss_dssp             HHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBSTTSB-------CHHH-----
T ss_pred             HHHHHHCCCCeEEEEEecCcccchhhhhccccccccccccchhhhhhccceeEEeeEEecccee-------eeeh-----
Confidence            788899997 5999999998753        223444555555666777888887665432111       0011     


Q ss_pred             CceEEEcCEEEEccCCcccCCccC--ccccCcccCCCCCeeeC-CCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHH
Q psy14927        993 KKEELSCDALLVCVGRRPYTHNLG--LEEIGIEKDEKGRVPVN-SRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEG 1069 (1074)
Q Consensus       993 ~~~~i~~D~vi~a~G~~p~~~~l~--l~~~gl~ld~~G~I~Vd-~~~~ts~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~ 1069 (1074)
                       ..+..+|.+++++|..+......  ...........+....+ ..++|+.|.||+.||+++++.++..|..+|+.+|..
T Consensus        88 -~~~~~~~~~~ia~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~vigg~~~av~a~~~g~~~a~~  166 (196)
T d1gtea4          88 -LKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMANTTVESVNDGKQASWY  166 (196)
T ss_dssp             -HHHTTCCEEEECCCCCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGCSCCCHHHHHHHHHHHHHH
T ss_pred             -hhccccceeeEEeccccCCccccccccccccccccccceeccccccCCCcccccccccccCCcchHHHHHHHHhhhehh
Confidence             22345788999998755433211  11122233344555555 567899999999999999888999999999988877


Q ss_pred             hh
Q psy14927       1070 IA 1071 (1074)
Q Consensus      1070 I~ 1071 (1074)
                      +.
T Consensus       167 v~  168 (196)
T d1gtea4         167 IH  168 (196)
T ss_dssp             HH
T ss_pred             Hh
Confidence            64

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.12  E-value=0.00062  Score=60.81  Aligned_cols=85  Identities=18%  Similarity=0.112  Sum_probs=69.1

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhh
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVR   84 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr   84 (1074)
                      .+.+.|++++|+..|+++-..+                    ++++..|.++|..+...|++++|+.+|.++=..     
T Consensus        25 ~~~~~g~~~~A~~~~~~al~~~--------------------p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~-----   79 (112)
T d1hxia_          25 SMLKLANLAEAALAFEAVCQKE--------------------PEREEAWRSLGLTQAENEKDGLAIIALNHARML-----   79 (112)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS--------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             HHHHHhhhHHHHHHHhhhcccc--------------------cccchhhhhhhhhhhhhhhHHHhhccccccccc-----
Confidence            3567788888888887776332                    456889999999999999999999999865222     


Q ss_pred             HhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHH
Q psy14927         85 VLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSV  130 (1074)
Q Consensus        85 ~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~  130 (1074)
                                      .+.+..+.+.+|..|..+|++++|++.|.+
T Consensus        80 ----------------~p~~~~a~~~la~~y~~~g~~~~A~~~l~~  109 (112)
T d1hxia_          80 ----------------DPKDIAVHAALAVSHTNEHNANAALASLRA  109 (112)
T ss_dssp             ----------------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------ccccccchHHHHHHHHHCCCHHHHHHHHHH
Confidence                            456788999999999999999999999876

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.00028  Score=67.78  Aligned_cols=47  Identities=19%  Similarity=0.271  Sum_probs=38.0

Q ss_pred             hHHHHhhhCCeEEEee-eEEEecCCeEEEEeCCCCeeEEEcCeEEEccC
Q psy14927        847 GIAHLFKSNKVTQLNG-HGKITGPNTVTVIKSDGSTEEVKTKNILIATG  894 (1074)
Q Consensus       847 ~~~~~l~~~gV~~~~g-~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG  894 (1074)
                      .....++..||+++.+ .+..++.+.+.+.. +|++.++.+|.||+|+|
T Consensus       113 ~~~~~~~~~gv~~~~~~~v~~i~~~gv~~~~-~g~e~~i~aD~Vv~A~G  160 (162)
T d1ps9a2         113 IHRTTLLSRGVKMIPGVSYQKIDDDGLHVVI-NGETQVLAVDNVVICAG  160 (162)
T ss_dssp             HHHHHHHHTTCEEECSCEEEEEETTEEEEEE-TTEEEEECCSEEEECCC
T ss_pred             HHHHHHhhCCeEEEeeeEEEEEcCCCCEEec-CCeEEEEECCEEEECCC
Confidence            3567778889999998 57788988877654 55556799999999999

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.06  E-value=0.00098  Score=65.48  Aligned_cols=86  Identities=16%  Similarity=0.101  Sum_probs=72.0

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhh
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVR   84 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr   84 (1074)
                      .+-..|+|++|+.+|+++-..+                    +.++.+|...|..+...|+|+.|+.+|.+|=..     
T Consensus        13 ~~~~~g~~~~Ai~~~~kal~~~--------------------p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l-----   67 (201)
T d2c2la1          13 RLFVGRKYPEAAACYGRAITRN--------------------PLVAVYYTNRALCYLKMQQPEQALADCRRALEL-----   67 (201)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC--------------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-----
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC--------------------CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh-----
Confidence            5677899999999999887433                    456889999999999999999999999887554     


Q ss_pred             HhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927         85 VLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus        85 ~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                                      .+....+.+.+|..|..+|++++|+..|.++
T Consensus        68 ----------------~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~a   98 (201)
T d2c2la1          68 ----------------DGQSVKAHFFLGQCQLEMESYDEAIANLQRA   98 (201)
T ss_dssp             ----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ----------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence                            2456778899999999999999999988653

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.0019  Score=63.54  Aligned_cols=103  Identities=12%  Similarity=0.096  Sum_probs=61.5

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhCh------
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDY------   79 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~------   79 (1074)
                      ....|+|++|++.|++....                       ++.+|-++|..+...|++++|+++|.+|=..      
T Consensus        15 ~~~~~d~~~Al~~~~~i~~~-----------------------~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~   71 (192)
T d1hh8a_          15 AADKKDWKGALDAFSAVQDP-----------------------HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV   71 (192)
T ss_dssp             HHHTTCHHHHHHHHHTSSSC-----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHCCCHHHHHHHHHhcCCC-----------------------CHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhh
Confidence            34556666666666654422                       3556777777777777777777777775332      


Q ss_pred             --hhhhhHhhccCCHHHHHHHHHhc---------------------CChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927         80 --LSMVRVLCFLQDFSRAAELANAS---------------------GDTAAAYHLARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus        80 --~~~vr~l~~~~~~~~a~~i~~~~---------------------~~~~~~~~la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                        .+...++.++|++++|.+-.++.                     ......+.+|..+.+.|++++|++.|.++
T Consensus        72 a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A  146 (192)
T d1hh8a_          72 AYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA  146 (192)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence              33344455566665555433311                     01244567777777778888877776544

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.90  E-value=0.0034  Score=67.97  Aligned_cols=118  Identities=15%  Similarity=0.167  Sum_probs=65.2

Q ss_pred             HHHHHHHhCCCEEEeCceEEEEEecC---Ce-EEEEEeeccCCCCceEEEcCEEEEccCC-----cccCCccC-------
Q psy14927        953 QFQRILGKQGMQFKLGTKVTGASKSG---DN-ITVTIENVKDPTKKEELSCDALLVCVGR-----RPYTHNLG------- 1016 (1074)
Q Consensus       953 ~~~~~l~~~gV~i~~~~~v~~i~~~~---~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~-----~p~~~~l~------- 1016 (1074)
                      .........+++++.......+....   +. ..+...+.. +|+...+.++.||+|+|-     .|++....       
T Consensus       157 ~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~v~~~~~~~~~-~G~~~~i~Ak~VILATGG~~~~~~~~~~~~~~~~~~~~  235 (356)
T d1jnra2         157 AEAAKMAVGEENIYERVFIFELLKDNNDPNAVAGAVGFSVR-EPKFYVFKAKAVILATGGATLLFRPRSTGEAAGRTWYA  235 (356)
T ss_dssp             HHHHHHHHCGGGEECSEEEEEEEECTTCTTBEEEEEEEESS-SSCEEEEECSEEEECCCCBCSSSCCSCCSGGGGCCSSC
T ss_pred             HHHHHhhhcceEEEEEEEEEEeeeecccccceeeeEEEEee-cCcEEEeeCCEEEEcCCCccccccCCCCccccccccCC
Confidence            33344455667777776666665321   22 223333323 466778999999999984     33322100       


Q ss_pred             --cc--------ccCcccC--------CCCC--------eeeCCCCCCCCCCEEEecccCCC--CCcHHHHHHHHHHHHH
Q psy14927       1017 --LE--------EIGIEKD--------EKGR--------VPVNSRFQTVIPNIFAIGDCIHG--PMLAHKAEDEGIVCVE 1068 (1074)
Q Consensus      1017 --l~--------~~gl~ld--------~~G~--------I~Vd~~~~ts~~~IyAiGD~~~~--~~~~~~A~~~G~~aA~ 1068 (1074)
                        ..        ..|..+.        +.+.        ..++....|+.|++|++||+++.  ..+...+...|.++++
T Consensus       236 ~~~tGdG~~ma~~aGa~l~~~~~~q~~p~~~~~~~~~~~~~~~~~~~~~~~gl~~~g~~~~~~g~rf~~~~~~~g~~a~~  315 (356)
T d1jnra2         236 IFDTGSGYYMGLKAGAMLTQAGFWVCGPEDLMPEEYAKLFPLKYNRMTTVKGLFAIGDCAGANPHKFSSGSFTEGRIAAK  315 (356)
T ss_dssp             TTCBSHHHHHHHHHTCCEESCEECCCCCTTTCCHHHHTTCSSCCTTBCSSBTEEECGGGBCSCCCCHHHHHHHHHHHHHH
T ss_pred             CCcCChHHHHHHHhhhhhcCCCceEeeccccCChhhccccccCcccccccccccccchhcCCccccCccccccccchhHH
Confidence              00        1111111        0111        11223334678999999998864  3356667788888887


Q ss_pred             Hhh
Q psy14927       1069 GIA 1071 (1074)
Q Consensus      1069 ~I~ 1071 (1074)
                      ++.
T Consensus       316 ~~~  318 (356)
T d1jnra2         316 AAV  318 (356)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.002  Score=61.16  Aligned_cols=87  Identities=17%  Similarity=0.163  Sum_probs=65.4

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhh
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVR   84 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr   84 (1074)
                      .+...|+|++|+..|+++-..+                    ++++..|..+|..+...|++++|.++|.++=..     
T Consensus        19 ~~~~~~~y~~A~~~~~~al~~~--------------------p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~-----   73 (159)
T d1a17a_          19 DYFKAKDYENAIKFYSQAIELN--------------------PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-----   73 (159)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS--------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             HHHHcCCHHHHHHHhhhccccc--------------------hhhhhhhhhhHHHHHhccccchHHHHHHHHHHH-----
Confidence            3456677777777776665322                    456778888888888888888888888776332     


Q ss_pred             HhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHhC
Q psy14927         85 VLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAG  132 (1074)
Q Consensus        85 ~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~  132 (1074)
                                      .+.+..+...+|..|...|++++|+++|.++-
T Consensus        74 ----------------~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~  105 (159)
T d1a17a_          74 ----------------DKKYIKGYYRRAASNMALGKFRAALRDYETVV  105 (159)
T ss_dssp             ----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ----------------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                            45677888999999999999999999876653

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=96.87  E-value=0.0055  Score=62.35  Aligned_cols=20  Identities=25%  Similarity=0.104  Sum_probs=15.6

Q ss_pred             HHHHHHhCChHHHHHHHHhh
Q psy14927        178 VLLYHKAGALHKALDLAFKL  197 (1074)
Q Consensus       178 ~~ly~kaG~~~kAl~l~~~~  197 (1074)
                      +..|.+.|++.+|++.+.+.
T Consensus       216 g~~~~~~g~~~~A~~~~~~a  235 (259)
T d1xnfa_         216 GKYYLSLGDLDSATALFKLA  235 (259)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHH
Confidence            56788888888888887663

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=96.72  E-value=0.0017  Score=68.71  Aligned_cols=56  Identities=21%  Similarity=0.394  Sum_probs=44.5

Q ss_pred             CHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEE-EEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927        947 DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNIT-VTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus       947 ~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~-v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
                      +..+...+.+.+++.|++++.+++|+++..+++++. |.+.       ..++.||.||+|+|.-
T Consensus       147 p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~~~~v~~V~T~-------~g~i~a~~VV~aaG~~  203 (305)
T d1pj5a2         147 AARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTA-------DGVIPADIVVSCAGFW  203 (305)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEET-------TEEEECSEEEECCGGG
T ss_pred             hhhhhhhHHhhhhcccccccCCceEEEEEEeCCEEEEEecc-------ceeEECCEEEEecchh
Confidence            455667777888899999999999999998877643 4432       2369999999999964

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.70  E-value=0.00033  Score=74.05  Aligned_cols=29  Identities=7%  Similarity=-0.028  Sum_probs=25.1

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhcc
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAG  822 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~  822 (1074)
                      |.+|+||||||+|+++|+.|++     +++|+.+
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~   35 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4459999999999999999999     7787754

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.0019  Score=59.03  Aligned_cols=93  Identities=19%  Similarity=0.315  Sum_probs=68.1

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhh
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVR   84 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr   84 (1074)
                      ++...|+|++|+.+|+++-..+                    ++++..+..+|..+...|+|++|+++|.++=+.+.-  
T Consensus        13 ~~~~~~~y~~Ai~~y~~al~~~--------------------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~--   70 (128)
T d1elra_          13 DAYKKKDFDTALKHYDKAKELD--------------------PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE--   70 (128)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC--------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC--------------------cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcc--
Confidence            4667899999999999887443                    456788999999999999999999999877443211  


Q ss_pred             HhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927         85 VLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus        85 ~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                         ....+.   .+      ..+...+|..+...|++++|+++|.++
T Consensus        71 ---~~~~~~---~~------a~~~~~lg~~~~~~~~~~~A~~~~~ka  105 (128)
T d1elra_          71 ---NREDYR---QI------AKAYARIGNSYFKEEKYKDAIHFYNKS  105 (128)
T ss_dssp             ---STTCHH---HH------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ---cHHHHH---HH------HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence               111110   00      124568899999999999999998654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.0043  Score=60.91  Aligned_cols=79  Identities=15%  Similarity=0.171  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHhhCh-----hhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhcCCh
Q psy14927         52 LLKWWAQYIESTEDMDLAMKYYEEARDY-----LSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQF  121 (1074)
Q Consensus        52 l~~~~a~~~e~~~~~~~A~~~y~~a~d~-----~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~g~~  121 (1074)
                      ||.. |-.+...|+|++|+++|.+..+.     .++..++..+|++++|.+..+     ++....+.+.+|..|.++|++
T Consensus         8 l~~~-g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~   86 (192)
T d1hh8a_           8 LWNE-GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY   86 (192)
T ss_dssp             HHHH-HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHH-HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccH
Confidence            4433 77888999999999999987654     456667888999999988765     467888899999999999999


Q ss_pred             HHHHHHHHHh
Q psy14927        122 DEAIHFYSVA  131 (1074)
Q Consensus       122 ~~Ai~~y~~a  131 (1074)
                      ++|++.|.++
T Consensus        87 ~~A~~~~~kA   96 (192)
T d1hh8a_          87 DLAIKDLKEA   96 (192)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999987554

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.44  E-value=0.0037  Score=59.15  Aligned_cols=68  Identities=12%  Similarity=0.017  Sum_probs=47.3

Q ss_pred             hhhh--ccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEec
Q psy14927        797 VLNT--LGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITG  868 (1074)
Q Consensus       797 Vvii--GgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id  868 (1074)
                      |||+  |||+.|+.+|..+++     ++++..+..+...            .......+...+.+.||+++++ .+..++
T Consensus        42 vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~~------------~~~~~~~~~~~l~~~GV~i~~~~~v~~i~  109 (156)
T d1djqa2          42 VVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMH------------FTLEYPNMMRRLHELHVEELGDHFCSRIE  109 (156)
T ss_dssp             EEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHHH------------HTTCHHHHHHHHHHTTCEEEETEEEEEEE
T ss_pred             eEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcccccc------------chhHHHHHHHHHhhccceEEeccEEEEec
Confidence            6665  999999999999999     5666544332111            1222334667777899999999 588888


Q ss_pred             CCeEEEEe
Q psy14927        869 PNTVTVIK  876 (1074)
Q Consensus       869 ~~~~~v~~  876 (1074)
                      ++...+..
T Consensus       110 ~~~v~l~~  117 (156)
T d1djqa2         110 PGRMEIYN  117 (156)
T ss_dssp             TTEEEEEE
T ss_pred             CcceEEEe
Confidence            87776653

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=96.30  E-value=0.0013  Score=68.89  Aligned_cols=33  Identities=18%  Similarity=0.210  Sum_probs=28.4

Q ss_pred             hhhhhccccchHHHHHHHhh------hhhhhcccccccc
Q psy14927        796 VVLNTLGNCAAVQANYHLAT------KLFTQAGDKGVKL  828 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~------~l~e~~~~~g~~~  828 (1074)
                      +|+||||||+|++||++|++      +++|+.+..|+..
T Consensus        35 DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~   73 (278)
T d1rp0a1          35 DVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGA   73 (278)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTT
T ss_pred             CEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCce
Confidence            49999999999999999975      7999988777644

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=96.24  E-value=0.0023  Score=68.17  Aligned_cols=49  Identities=12%  Similarity=0.233  Sum_probs=31.8

Q ss_pred             HHHhhhCCeEEEeee-EEEe--cCCeEE-E---EeCCCCeeEEEcCeEEEccCCCC
Q psy14927        849 AHLFKSNKVTQLNGH-GKIT--GPNTVT-V---IKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       849 ~~~l~~~gV~~~~g~-v~~i--d~~~~~-v---~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                      ....+..+|+++.++ ++.+  +.+.+. +   ...+|+...+.++.||||||+-.
T Consensus       142 ~~~~~~~~v~i~~~~~v~~Ll~d~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g  197 (311)
T d1kf6a2         142 QTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAG  197 (311)
T ss_dssp             HHHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCG
T ss_pred             HHHHccCcceeEeeeEeeeeEecCCcceeEEEEEcCCCcEEEEECCEEEEcCCCcc
Confidence            344455689999984 5433  333332 1   23577666789999999999853

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=96.15  E-value=0.021  Score=57.76  Aligned_cols=80  Identities=16%  Similarity=-0.019  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHhhC--------hhhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHh
Q psy14927         51 VLLKWWAQYIESTEDMDLAMKYYEEARD--------YLSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYEN  117 (1074)
Q Consensus        51 ~l~~~~a~~~e~~~~~~~A~~~y~~a~d--------~~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~  117 (1074)
                      .++-..|..+...|++++|.++|.++=.        |..+..++..+|++++|.+..+     .+.+..+.+.+|..|..
T Consensus        38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~  117 (259)
T d1xnfa_          38 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY  117 (259)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH
Confidence            4666779999999999999999988643        3345555667777777766554     24556667777777777


Q ss_pred             cCChHHHHHHHHH
Q psy14927        118 SGQFDEAIHFYSV  130 (1074)
Q Consensus       118 ~g~~~~Ai~~y~~  130 (1074)
                      .|++++|++.|.+
T Consensus       118 ~g~~~~A~~~~~~  130 (259)
T d1xnfa_         118 GGRDKLAQDDLLA  130 (259)
T ss_dssp             TTCHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHH
Confidence            7777777776654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.07  E-value=0.011  Score=56.51  Aligned_cols=81  Identities=17%  Similarity=0.130  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHhhCh-----------------------hhhhhHhhccCCHHHHHHHHH-----hc
Q psy14927         51 VLLKWWAQYIESTEDMDLAMKYYEEARDY-----------------------LSMVRVLCFLQDFSRAAELAN-----AS  102 (1074)
Q Consensus        51 ~l~~~~a~~~e~~~~~~~A~~~y~~a~d~-----------------------~~~vr~l~~~~~~~~a~~i~~-----~~  102 (1074)
                      ..++.-|..+-..|+|++|+++|.++=++                       .++..+|..+|++++|.+..+     ++
T Consensus        14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p   93 (170)
T d1p5qa1          14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS   93 (170)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccc
Confidence            34556677888899999999999876443                       346677889999999998766     46


Q ss_pred             CChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927        103 GDTAAAYHLARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus       103 ~~~~~~~~la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                      .+..+.+.+|..|...|++++|+++|.++
T Consensus        94 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~a  122 (170)
T d1p5qa1          94 NNEKGLSRRGEAHLAVNDFELARADFQKV  122 (170)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cchhhhHHHHHHHHHhhhHHHHHHHHHHH
Confidence            78899999999999999999999998875

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=96.06  E-value=0.1  Score=52.88  Aligned_cols=83  Identities=22%  Similarity=0.274  Sum_probs=63.5

Q ss_pred             ChHHHHHHHHHHHhccCHHHHHHHHHHh---hChhhhhhH---hhc----cCCHHHHHHHHH---hcCChHHHHHHHHHH
Q psy14927         49 DPVLLKWWAQYIESTEDMDLAMKYYEEA---RDYLSMVRV---LCF----LQDFSRAAELAN---ASGDTAAAYHLARQY  115 (1074)
Q Consensus        49 ~~~l~~~~a~~~e~~~~~~~A~~~y~~a---~d~~~~vr~---l~~----~~~~~~a~~i~~---~~~~~~~~~~la~~~  115 (1074)
                      +|+-+-.+|..+..++++++|.++|.+|   ||..+...+   |..    ..++..|....+   ..++..+...++..+
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~   80 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLY   80 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhcccccc
Confidence            5788889999999999999999999998   777766666   322    347777776655   456777888888877


Q ss_pred             Hh----cCChHHHHHHHHHh
Q psy14927        116 EN----SGQFDEAIHFYSVA  131 (1074)
Q Consensus       116 ~~----~g~~~~Ai~~y~~a  131 (1074)
                      ..    ..+.++|+..|..+
T Consensus        81 ~~~~~~~~~~~~a~~~~~~a  100 (265)
T d1ouva_          81 YSGQGVSQNTNKALQYYSKA  100 (265)
T ss_dssp             HHTSSSCCCHHHHHHHHHHH
T ss_pred             ccccccchhhHHHHHHHhhh
Confidence            64    35668888877665

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.057  Score=56.92  Aligned_cols=105  Identities=13%  Similarity=0.174  Sum_probs=74.7

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhcc-CHHHHHHHHHHhhCh-----
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTE-DMDLAMKYYEEARDY-----   79 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~-~~~~A~~~y~~a~d~-----   79 (1074)
                      +.+.+++++|+++|+++-..                    .+++...|...|..+...| ++++|+++|.++-..     
T Consensus        53 ~~~~e~~~~Al~~~~~ai~l--------------------nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~  112 (315)
T d2h6fa1          53 LQRDERSERAFKLTRDAIEL--------------------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY  112 (315)
T ss_dssp             HHHTCCCHHHHHHHHHHHHH--------------------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHhCCchHHHHHHHHHHHHH--------------------CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhh
Confidence            34455666666666665532                    2566778888898888866 599999999886332     


Q ss_pred             ---hhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhcCChHHHHHHHHH
Q psy14927         80 ---LSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQFDEAIHFYSV  130 (1074)
Q Consensus        80 ---~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~  130 (1074)
                         .....++..+|++++|.+..+     .+.+..+...+|..+...|++++|+++|.+
T Consensus       113 ~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~  171 (315)
T d2h6fa1         113 QVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQ  171 (315)
T ss_dssp             HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred             hHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence               233445777888888877765     356778888888888888888888887544

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.00069  Score=72.69  Aligned_cols=35  Identities=14%  Similarity=0.168  Sum_probs=31.4

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhcccccccc
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL  828 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~  828 (1074)
                      +.+|||||||++||+||+.|++     +|+|+.+..||..
T Consensus         5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr~   44 (449)
T d2dw4a2           5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRV   44 (449)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcccE
Confidence            3449999999999999999999     8999999999854

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.018  Score=52.01  Aligned_cols=98  Identities=16%  Similarity=0.223  Sum_probs=66.5

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHhC
Q psy14927         53 LKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAG  132 (1074)
Q Consensus        53 ~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~  132 (1074)
                      ++..|..+...|+|++|+++|.++=+.                     .+.+..+.+.+|..|.++|++++|++.|.++ 
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~---------------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a-   64 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKEL---------------------DPTNMTYITNQAAVYFEKGDYNKCRELCEKA-   64 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------CcccHHHHHhHHHHHHHcCchHHHHHHHHHH-
Confidence            345677777889999999999876544                     3356778889999999999999999987654 


Q ss_pred             ChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHcc-CChhHHHHHHHHh
Q psy14927        133 SCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLET-IEPDKAVLLYHKA  184 (1074)
Q Consensus       133 ~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~-~~~~~A~~ly~ka  184 (1074)
                           +.+-..+..  .+..++     ..+...|..++. +++++|+.+|.++
T Consensus        65 -----l~l~~~~~~--~~~~~a-----~~~~~lg~~~~~~~~~~~A~~~~~ka  105 (128)
T d1elra_          65 -----IEVGRENRE--DYRQIA-----KAYARIGNSYFKEEKYKDAIHFYNKS  105 (128)
T ss_dssp             -----HHHHHHSTT--CHHHHH-----HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -----HHhCcccHH--HHHHHH-----HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence                 554444311  111111     233456666666 6788888887654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=95.88  E-value=0.015  Score=55.27  Aligned_cols=101  Identities=12%  Similarity=0.083  Sum_probs=65.8

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhh
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVR   84 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr   84 (1074)
                      ++-..|+|++|+..|.++-.....-+......+.....+.     ..++..+|..+...|+|++|+.+|.++=       
T Consensus        24 ~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~-----~~~~~Nla~~~~~l~~~~~Ai~~~~~al-------   91 (168)
T d1kt1a1          24 VYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFL-----LAAFLNLAMCYLKLREYTKAVECCDKAL-------   91 (168)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH-----HHHHHHHHHHHHHTTCHHHHHHHHHHHH-------
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhH-----HHHHHhHHHHHHHhhhcccchhhhhhhh-------
Confidence            4567899999999998876332111111111222222222     2355556777777777777777666541       


Q ss_pred             HhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927         85 VLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus        85 ~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                                    -.++.+..+.+.+|..|...|++++|++.|.++
T Consensus        92 --------------~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~a  124 (168)
T d1kt1a1          92 --------------GLDSANEKGLYRRGEAQLLMNEFESAKGDFEKV  124 (168)
T ss_dssp             --------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             --------------hcccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                          115678889999999999999999999988764

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=95.85  E-value=0.0098  Score=57.42  Aligned_cols=110  Identities=21%  Similarity=0.205  Sum_probs=73.5

Q ss_pred             hhHHhhcCCcEEEEecCCccCC--------C--CCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCC
Q psy14927        922 GSVWGRLGAEVTAIEFMNAIGG--------M--GIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDP  991 (1074)
Q Consensus       922 A~~l~~~G~~Vtlv~~~~~~~~--------~--~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~  991 (1074)
                      |..+++.|.+|||+++.+.+..        |  ....++.+.+.+.+++.||++++++.|+.             +    
T Consensus        59 A~~la~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~Vt~-------------~----  121 (179)
T d1ps9a3          59 AINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTA-------------D----  121 (179)
T ss_dssp             HHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCS-------------S----
T ss_pred             HHHHHhhccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCEEcc-------------c----
Confidence            8889999999999999887642        1  12345667788888999999999986531             1    


Q ss_pred             CCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCC-cHHHHHHHHHHHHHHh
Q psy14927        992 TKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPM-LAHKAEDEGIVCVEGI 1070 (1074)
Q Consensus       992 g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~-~~~~A~~~G~~aA~~I 1070 (1074)
                         ....+|.||+|+|..|.....    .+++               .-.+|-++|..-.... ....|+..|..++-.|
T Consensus       122 ---~~~~~d~vilAtG~~~~~~~~----pg~~---------------~g~~v~vigggd~a~~~~~~~Av~~G~~va~~i  179 (179)
T d1ps9a3         122 ---QLQAFDETILASGIPNRALAQ----PLID---------------SGKTVHLIGGCDVAMELDARRAIAQGTRLALEI  179 (179)
T ss_dssp             ---SSCCSSEEEECCCEECCTTHH----HHHT---------------TTCCEEECGGGTCCSSCCHHHHHHHHHHHHHHC
T ss_pred             ---ccccceeEEEeecCCCccccc----chhc---------------cCCEEEEECCcHhhhhccchhhhhccCEEEEeC
Confidence               124679999999998765321    1111               1124555554333333 3678899988777543

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.77  E-value=0.0047  Score=58.21  Aligned_cols=22  Identities=14%  Similarity=-0.008  Sum_probs=19.5

Q ss_pred             chhhhhhccccchHHHHHHHhh
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT  815 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~  815 (1074)
                      +++|||||||..|+.+|.++.|
T Consensus        45 ~~kVvVIGGGdtA~D~A~~a~r   66 (153)
T d1gtea3          45 RGAVIVLGAGDTAFDCATSALR   66 (153)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCChhHHHHHHHHHH
Confidence            3349999999999999999888

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.70  E-value=0.025  Score=53.01  Aligned_cols=82  Identities=15%  Similarity=0.124  Sum_probs=54.2

Q ss_pred             hhHHhhcCC-cEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeec---c------C
Q psy14927        922 GSVWGRLGA-EVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENV---K------D  990 (1074)
Q Consensus       922 A~~l~~~G~-~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~---~------~  990 (1074)
                      |..+.++|. +|++++|++...++....+     ...+...+++++.+..+.++...++. ..+.+...   +      .
T Consensus        61 A~~a~r~GA~~V~vi~rr~~~~~~a~~~~-----~~~a~~~~~~~~~~~~~~ei~~~~~~~~~v~~~~~e~d~~G~~~~~  135 (153)
T d1gtea3          61 ATSALRCGARRVFLVFRKGFVNIRAVPEE-----VELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNED  135 (153)
T ss_dssp             HHHHHHTTCSEEEEECSSCGGGCCSCHHH-----HHHHHHTTCEEECSEEEEEEEEETTEEEEEEEEEEEECTTSCEEEE
T ss_pred             HHHHHHcCCcceeEEEeCChhhhccchhh-----eeecccccceeEeccccEEEEecCCceEEEEEEEeeECCCCCEecC
Confidence            667788875 5889999886653332222     23456788999999999998876554 22222110   0      0


Q ss_pred             CCCceEEEcCEEEEccCC
Q psy14927        991 PTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus       991 ~g~~~~i~~D~vi~a~G~ 1008 (1074)
                      +|+..+++||.||+|+|.
T Consensus       136 ~g~e~~i~aD~V~~AiG~  153 (153)
T d1gtea3         136 EDQIVHLKADVVISAFGS  153 (153)
T ss_dssp             EEEEEEEECSEEEECSCE
T ss_pred             CCCEEEEECCEEEECcCc
Confidence            244678999999999983

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.60  E-value=0.013  Score=55.80  Aligned_cols=104  Identities=15%  Similarity=0.095  Sum_probs=64.5

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhH
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRV   85 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~   85 (1074)
                      +-..|+|++|+..|.++-...    ................+....++..+|..+...|+|++|+.+|.++=..      
T Consensus        37 ~~~~~~y~~Ai~~y~~al~~~----~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~------  106 (169)
T d1ihga1          37 FFKSQNWEMAIKKYTKVLRYV----EGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI------  106 (169)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHH----HHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT------
T ss_pred             HHHcCCHHHHHHHHHHHHHhh----hhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh------
Confidence            446789999999998875321    1110000000000111122345556677777777777777777665322      


Q ss_pred             hhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHhCCh
Q psy14927         86 LCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSC  134 (1074)
Q Consensus        86 l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~  134 (1074)
                                     ++.+..+.+.+|..|...|++++|++.|.++-.+
T Consensus       107 ---------------~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l  140 (169)
T d1ihga1         107 ---------------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI  140 (169)
T ss_dssp             ---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ---------------hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence                           3567788999999999999999999988766543

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.57  E-value=0.059  Score=57.26  Aligned_cols=124  Identities=19%  Similarity=0.155  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCC--cccCCccC---------
Q psy14927        948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGR--RPYTHNLG--------- 1016 (1074)
Q Consensus       948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~--~p~~~~l~--------- 1016 (1074)
                      +.+.+++....+..+..+++++.|++|+.++++..|++.+....++.....+|.||+|+|.  .|+...+.         
T Consensus       113 ~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~~~w~Vt~~~~~~~~~~~~~~~d~VI~AtG~~s~p~~~~~~~~~~p~~~~  192 (335)
T d2gv8a1         113 HTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYTGYLYSVPFPSLAK  192 (335)
T ss_dssp             HHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEEEEESEEEECCCSSSSBCCCBCCCCCCHHHHS
T ss_pred             HHHHHHHHHHHHHhhhcccCceEEEEEEecCCEEEEEEEecCCCCeEEEEEeeEEEEcccccccceecccccCCCCcchh
Confidence            3556667677777788999999999999988887888877441222345679999999996  35443210         


Q ss_pred             ccccCcccCCCCCeeeC---CCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHhhC
Q psy14927       1017 LEEIGIEKDEKGRVPVN---SRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus      1017 l~~~gl~ld~~G~I~Vd---~~~~ts~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I~~ 1072 (1074)
                      +......+-.+|.-..+   ..+....|.+..+|=...... ......|+..++.-+.|
T Consensus       193 f~~~~~~~~~~~~~~~~ly~~~~~~~~p~l~f~G~~~~v~~-~~~~e~Qa~~~a~~~~g  250 (335)
T d2gv8a1         193 LKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVP-FPTSQAQAAFLARVWSG  250 (335)
T ss_dssp             CCSTTTCCCSSSSSCCSEETTTEETTCTTEEESSCCBSSCH-HHHHHHHHHHHHHHHTT
T ss_pred             cccCccceeccccceeeeecccccCCCCceEEeeeEEEEec-CCchHHHHHHHHHHHcC
Confidence            11111111111111111   112235678888885444332 23345556666655544

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.36  E-value=0.057  Score=47.68  Aligned_cols=89  Identities=8%  Similarity=-0.042  Sum_probs=54.1

Q ss_pred             HHHHHHhhCHHHHHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHHHhcCCHHHHHHHHHHcCCHHHHHHHhccHHHHHH
Q psy14927        644 MKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCGQLDAVES  723 (1074)
Q Consensus       644 ~~~y~~ag~~~~ai~~~~~~~~~~~a~~v~~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~kag~~~~Av~ma~~w~~a~~  723 (1074)
                      .+-+.+.|++++||++|..+      +  -........-..+|..+...|++++|++.|.++=                 
T Consensus        10 g~~~~~~g~~~eAi~~~~~a------l--~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al-----------------   64 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEA------I--KLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV-----------------   64 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH------H--HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-----------------
T ss_pred             HHHHHHcCCHHHHHHHHHHH------H--hcCCcchhhhhcccccccccccccccchhhhhHH-----------------
Confidence            33444455555555554332      1  1223333334477888888888888888876651                 


Q ss_pred             HHHHhCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhC
Q psy14927        724 IASELNVQSDQDLILKCASYFARREHHDRAVQMYAIAR  761 (1074)
Q Consensus       724 ~A~~~~~~~~~~~~~~~a~~~~~~~~~~~Ai~~y~~ag  761 (1074)
                         +. .+..+..+..+|.-+...|+++.|+.+|.++-
T Consensus        65 ---~~-~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~   98 (117)
T d1elwa_          65 ---DL-KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGL   98 (117)
T ss_dssp             ---HH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ---Hh-ccchhhHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence               11 23445677888887788888888877776654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=95.35  E-value=0.019  Score=53.89  Aligned_cols=113  Identities=17%  Similarity=0.170  Sum_probs=72.0

Q ss_pred             hhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhH
Q psy14927          6 TMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRV   85 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~   85 (1074)
                      ..+.|+|++|++.|+++-......|.........        .....+...|..+...|+|++|.+.|..+-.+..    
T Consensus        19 ~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~--------~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~----   86 (156)
T d2hr2a1          19 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAG--------FDAFCHAGLAEALAGLRSFDEALHSADKALHYFN----   86 (156)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----
T ss_pred             HHHcCCHHHHHHHHHHHHHhChhhhhhhhcccch--------hHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc----
Confidence            3467999999999999986554444332111000        0124566788889999999999988876654422    


Q ss_pred             hhccCCH--HHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHh
Q psy14927         86 LCFLQDF--SRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQ  144 (1074)
Q Consensus        86 l~~~~~~--~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~  144 (1074)
                        .....  +.+..      ...+.+.+|..|.+.|++++|++.|.      .|+++-.+.
T Consensus        87 --~~~~~~~~~~~~------~~~a~~~~g~~~~~lg~~eeA~~~~~------~Al~l~~~~  133 (156)
T d2hr2a1          87 --RRGELNQDEGKL------WISAVYSRALALDGLGRGAEAMPEFK------KVVEMIEER  133 (156)
T ss_dssp             --HHCCTTSTHHHH------HHHHHHHHHHHHHHTTCHHHHHHHHH------HHHHHHHHC
T ss_pred             --ccccccccccch------hHHHHhhhHHHHHHHHHHHHHHHHHH------HHHHhhHHh
Confidence              21111  11111      12356789999999999999999865      455555544

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.26  E-value=0.099  Score=54.57  Aligned_cols=126  Identities=9%  Similarity=0.064  Sum_probs=79.0

Q ss_pred             hhhcCCHHHHHHHHHHcCcc-cchhhhHh---------hhcHHHHHHHhhc-----C-CChHHHHHHHHHHHhccCHHHH
Q psy14927          6 TMKNGDIDRAIRMFEKAETH-QQHVPRML---------LENTDKLEKYIIQ-----S-KDPVLLKWWAQYIESTEDMDLA   69 (1074)
Q Consensus         6 ~~~~g~~~eA~~~Ye~~~~~-~~~~~~~~---------~~~~~~~~~~~~~-----~-~~~~l~~~~a~~~e~~~~~~~A   69 (1074)
                      ....+.+++|..+|+++-.. ....+.+.         .++++.+.....+     + +...+|..|+++....|+++.|
T Consensus        74 ~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~a  153 (308)
T d2onda1          74 NNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSG  153 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHH
T ss_pred             hhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHH
Confidence            34556789999999997531 11222221         1345555444443     2 2345788888888888888888


Q ss_pred             HHHHHHhhChh--------hhhhH-hhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927         70 MKYYEEARDYL--------SMVRV-LCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus        70 ~~~y~~a~d~~--------~~vr~-l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                      .+.|.++-...        ..+.+ +...|+++.|.++..     .+.+.......++++.+.|++++|-.+|.++
T Consensus       154 r~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~a  229 (308)
T d2onda1         154 RMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERV  229 (308)
T ss_dssp             HHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            88888865432        12222 334577877777654     2345566677778888888888887776554

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.24  E-value=0.034  Score=51.89  Aligned_cols=77  Identities=22%  Similarity=0.271  Sum_probs=57.1

Q ss_pred             HHHHHhccCHHHHHHHHHHhhCh------------------------hhhhhHhhccCCHHHHHHHHH-----hcCChHH
Q psy14927         57 AQYIESTEDMDLAMKYYEEARDY------------------------LSMVRVLCFLQDFSRAAELAN-----ASGDTAA  107 (1074)
Q Consensus        57 a~~~e~~~~~~~A~~~y~~a~d~------------------------~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~  107 (1074)
                      |.-+-..|+|.+|+.+|..|=++                        .++..+|..+|++++|.+.++     ++.+..+
T Consensus        24 G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka  103 (153)
T d2fbna1          24 GNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKA  103 (153)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccchhhhh
Confidence            44444566777777777654432                        245566788899998888766     4678889


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhCC
Q psy14927        108 AYHLARQYENSGQFDEAIHFYSVAGS  133 (1074)
Q Consensus       108 ~~~la~~~~~~g~~~~Ai~~y~~a~~  133 (1074)
                      .+.+|..|...|++++|+..|.++-.
T Consensus       104 ~~~~g~~~~~lg~~~~A~~~~~~al~  129 (153)
T d2fbna1         104 LYKLGVANMYFGFLEEAKENLYKAAS  129 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence            99999999999999999998876543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.16  E-value=0.061  Score=51.02  Aligned_cols=81  Identities=17%  Similarity=0.104  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHhhC-----------------------HHHHHHHHHHcCCHHHHHHHHH-----hc
Q psy14927        625 VLLKWWAQYIESTEDMDLAMKYYEEARD-----------------------YLSMVRVLCFLQDFSRAAELAN-----AS  676 (1074)
Q Consensus       625 ~l~~~~a~~~e~~~~~~~A~~~y~~ag~-----------------------~~~ai~~~~~~~~~~~a~~v~~-----~~  676 (1074)
                      ...+..|...-..|+|++|+.+|.+|=+                       +.+...+|.+.++|++|++.++     .+
T Consensus        14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p   93 (170)
T d1p5qa1          14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS   93 (170)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccc
Confidence            3556677777788899999998877621                       2345567999999999998774     23


Q ss_pred             CCcHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy14927        677 GDTAAAYHLARQYENSGQFDEAIHFYSVA  705 (1074)
Q Consensus       677 ~~~~~~~~~A~~~~~~g~~~~A~~~~~ka  705 (1074)
                      ........+|..+...|+|+.|+.+|-++
T Consensus        94 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~a  122 (170)
T d1p5qa1          94 NNEKGLSRRGEAHLAVNDFELARADFQKV  122 (170)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cchhhhHHHHHHHHHhhhHHHHHHHHHHH
Confidence            34444459999999999999999999876

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.84  E-value=0.014  Score=54.29  Aligned_cols=77  Identities=16%  Similarity=0.154  Sum_probs=53.7

Q ss_pred             hHHhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCH----------HHHHHH
Q psy14927          3 EEETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDM----------DLAMKY   72 (1074)
Q Consensus         3 ~~~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~----------~~A~~~   72 (1074)
                      +.+++..+.|++|++.|+++-..+                    ++++..+.+||..+...+++          ++|.++
T Consensus         4 ~~~~~r~~~fe~A~~~~e~al~~~--------------------P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~   63 (145)
T d1zu2a1           4 ETEFDRILLFEQIRQDAENTYKSN--------------------PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITK   63 (145)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHC--------------------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHccHHHHHHHHHHHHhhC--------------------CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence            567899999999999999986444                    45677777777776554444          444444


Q ss_pred             HHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q psy14927         73 YEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQ  120 (1074)
Q Consensus        73 y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~  120 (1074)
                      |.++                   .++  ++.+..+.+.+|..|..+|.
T Consensus        64 ~~kA-------------------l~l--~P~~~~a~~~lG~~y~~~g~   90 (145)
T d1zu2a1          64 FEEA-------------------LLI--DPKKDEAVWCIGNAYTSFAF   90 (145)
T ss_dssp             HHHH-------------------HHH--CTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHH-------------------HHh--cchhhHHHhhHHHHHHHccc
Confidence            4322                   222  56788888899988877653

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.83  E-value=0.0026  Score=67.77  Aligned_cols=65  Identities=9%  Similarity=0.031  Sum_probs=43.4

Q ss_pred             chhhhhhccccchHHHHHHHhh-------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG  862 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g  862 (1074)
                      ..+|+||||||+|++||++|++       +++|+.+..|+.+..........    .+.......+...|+.+...
T Consensus        50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~~~~~~gi~~~~~  121 (311)
T d2gjca1          50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAM----VMRKPAHLFLQELEIPYEDE  121 (311)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCE----EEETTTHHHHHHTTCCCEEC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcceeEecCEeCCHH----HHHhHHHHHHHhCCcEEEEe
Confidence            3459999999999999999985       79999998888776543322111    11122344455667765543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.83  E-value=0.017  Score=51.99  Aligned_cols=88  Identities=14%  Similarity=0.097  Sum_probs=54.3

Q ss_pred             HhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhcc---CHHHHHHHHHHhhChhh
Q psy14927          5 ETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTE---DMDLAMKYYEEARDYLS   81 (1074)
Q Consensus         5 ~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~---~~~~A~~~y~~a~d~~~   81 (1074)
                      .+-+.+++++|.+.|+++-..+                    +.++..+-.||..+...+   ++++|.+.|.++=..  
T Consensus         8 ~~~~~~~l~~Ae~~Y~~aL~~~--------------------p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~--   65 (122)
T d1nzna_           8 ELVSVEDLLKFEKKFQSEKAAG--------------------SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--   65 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHS--------------------CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--
T ss_pred             HhcCHHHHHHHHHHHHHHHhhC--------------------CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc--
Confidence            3455667777777777766433                    445666777777665433   334455555443211  


Q ss_pred             hhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927         82 MVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus        82 ~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                               ++        ......+.+.+|..|.+.|++++|+++|.++
T Consensus        66 ---------~~--------~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~a   98 (122)
T d1nzna_          66 ---------GS--------KEEQRDYVFYLAVGNYRLKEYEKALKYVRGL   98 (122)
T ss_dssp             ---------SC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ---------cC--------CchHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence                     00        0011246789999999999999999988765

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.81  E-value=0.0026  Score=67.92  Aligned_cols=34  Identities=15%  Similarity=0.122  Sum_probs=30.7

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhcccccccc
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL  828 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~  828 (1074)
                      |+|+|||||++|++||+.|++     +++|+.++.||..
T Consensus         3 KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~~   41 (314)
T d2bi7a1           3 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNS   41 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGG
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCee
Confidence            349999999999999999998     7999999999854

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=94.50  E-value=0.12  Score=46.61  Aligned_cols=68  Identities=19%  Similarity=0.309  Sum_probs=48.0

Q ss_pred             cCHHHHHHHHHHh---hChhhhhhH-hhccCCHHHHHHHHH---hcCChHHHHHHHHHHHh----cCChHHHHHHHHHh
Q psy14927         64 EDMDLAMKYYEEA---RDYLSMVRV-LCFLQDFSRAAELAN---ASGDTAAAYHLARQYEN----SGQFDEAIHFYSVA  131 (1074)
Q Consensus        64 ~~~~~A~~~y~~a---~d~~~~vr~-l~~~~~~~~a~~i~~---~~~~~~~~~~la~~~~~----~g~~~~Ai~~y~~a  131 (1074)
                      .++++|.++|.++   ||..+...+ .....+.++|.+..+   +.++..+++.||.+|..    .-|+++|+++|.++
T Consensus         7 kd~~~A~~~~~kaa~~g~~~a~~~l~~~~~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~a   85 (133)
T d1klxa_           7 KDLKKAIQYYVKACELNEMFGCLSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKA   85 (133)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTHHHHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCCChhhhhhhccccccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhh
Confidence            4667777777663   444444444 344567888888766   56888999999999885    34678888888776

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.46  E-value=0.16  Score=48.55  Aligned_cols=94  Identities=13%  Similarity=-0.090  Sum_probs=61.1

Q ss_pred             cHHHHHHHHHHhhCHHHHHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHHHhcCCHHHHHHHHHHcCCHHHHHHHhccH
Q psy14927        639 DMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCGQL  718 (1074)
Q Consensus       639 ~~~~A~~~y~~ag~~~~ai~~~~~~~~~~~a~~v~~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~kag~~~~Av~ma~~w  718 (1074)
                      ++++-.+.|.+.|++++|++.|..      |+++  .+.....-..+|..+...|+|++|+.+|-+|=..          
T Consensus         6 ~l~~~Gn~~~~~g~~~~Ai~~~~k------al~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l----------   67 (201)
T d2c2la1           6 ELKEQGNRLFVGRKYPEAAACYGR------AITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL----------   67 (201)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHH------HHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS----------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHH------HHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh----------
Confidence            344445556666666666666543      2221  2233333348888889999998888888766322          


Q ss_pred             HHHHHHHHHhCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhC
Q psy14927        719 DAVESIASELNVQSDQDLILKCASYFARREHHDRAVQMYAIAR  761 (1074)
Q Consensus       719 ~~a~~~A~~~~~~~~~~~~~~~a~~~~~~~~~~~Ai~~y~~ag  761 (1074)
                                 .+.....+..+|..+...|+++.|+..|.++-
T Consensus        68 -----------~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al   99 (201)
T d2c2la1          68 -----------DGQSVKAHFFLGQCQLEMESYDEAIANLQRAY   99 (201)
T ss_dssp             -----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -----------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence                       23344667888888888899999888887653

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.34  E-value=0.091  Score=48.91  Aligned_cols=77  Identities=19%  Similarity=0.134  Sum_probs=48.1

Q ss_pred             HHHHHHHhhhcHHHHHHHHHHh--------hCHHHHHHHHHHcCCHHHHHHHHH-----hcCCcHHHHHHHHHHHhcCCH
Q psy14927        629 WWAQYIESTEDMDLAMKYYEEA--------RDYLSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQF  695 (1074)
Q Consensus       629 ~~a~~~e~~~~~~~A~~~y~~a--------g~~~~ai~~~~~~~~~~~a~~v~~-----~~~~~~~~~~~A~~~~~~g~~  695 (1074)
                      ..|.-.-..|+|++|+.+|.++        .-|.+.-.+|...++|++|.+..+     .......-..+|..+...|++
T Consensus        15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~   94 (159)
T d1a17a_          15 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF   94 (159)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence            4555555677777777777776        223345556777777777776663     122223333677777777777


Q ss_pred             HHHHHHHHHc
Q psy14927        696 DEAIHFYSVA  705 (1074)
Q Consensus       696 ~~A~~~~~ka  705 (1074)
                      ++|+.+|.++
T Consensus        95 ~eA~~~~~~a  104 (159)
T d1a17a_          95 RAALRDYETV  104 (159)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777766655

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=94.17  E-value=0.02  Score=51.77  Aligned_cols=83  Identities=16%  Similarity=0.150  Sum_probs=52.8

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHh-hhCCeEEEeee-EEE
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLF-KSNKVTQLNGH-GKI  866 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l-~~~gV~~~~g~-v~~  866 (1074)
                      .++|+|||||...+..|..|++     +++.+.+....          .        ..+.+.+ ...+|++++++ ++.
T Consensus        30 gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~----------~--------~~~~~~~~~~~~I~v~~~~~v~~   91 (126)
T d1fl2a2          30 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA----------D--------QVLQDKLRSLKNVDIILNAQTTE   91 (126)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCS----------C--------HHHHHHHHTCTTEEEESSEEEEE
T ss_pred             CceEEEEeCCHHHHHHHHhhhccCCceEEEeccccccc----------c--------cccccccccccceeEEcCcceEE
Confidence            4459999999999999999998     33322221100          0        0122223 33579999984 555


Q ss_pred             ecC--CeEE-EEe---CCCCeeEEEcCeEEEccC
Q psy14927        867 TGP--NTVT-VIK---SDGSTEEVKTKNILIATG  894 (1074)
Q Consensus       867 id~--~~~~-v~~---~~G~~~~i~~d~lIIATG  894 (1074)
                      +..  +.++ +.+   .+|+..++..|.|+|+.|
T Consensus        92 i~G~~~~v~~v~l~~~~tge~~~l~vdgvFv~IG  125 (126)
T d1fl2a2          92 VKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIG  125 (126)
T ss_dssp             EEESSSSEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred             EEccccceeeEEEEECCCCCEEEEECCEEEEEeC
Confidence            543  2222 333   457778899999999988

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.10  E-value=0.0048  Score=65.16  Aligned_cols=33  Identities=6%  Similarity=-0.061  Sum_probs=30.1

Q ss_pred             hhhhhccccchHHHHHHHhh-----hhhhhcccccccc
Q psy14927        796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL  828 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~  828 (1074)
                      +|||||||++|+++|+.|++     +++|+.++.||..
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~~   40 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNA   40 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGG
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccce
Confidence            48999999999999999998     7999999998864

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=94.07  E-value=0.0047  Score=63.12  Aligned_cols=29  Identities=10%  Similarity=0.099  Sum_probs=25.6

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhcc
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAG  822 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~  822 (1074)
                      +++|||||||++|+++|+.|++     +|+|+..
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4559999999999999999999     7888754

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=93.78  E-value=0.08  Score=55.67  Aligned_cols=98  Identities=18%  Similarity=0.195  Sum_probs=67.9

Q ss_pred             HHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEcCEEEEccCC-----cccCCccC--------cc
Q psy14927        953 QFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGR-----RPYTHNLG--------LE 1018 (1074)
Q Consensus       953 ~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~-----~p~~~~l~--------l~ 1018 (1074)
                      .+.+..+..+|+++.++.+.++..+++. ..+...+.. +|+...+.++.||+|||-     .+++....        ..
T Consensus       140 ~l~~~~~~~~v~i~~~~~v~~Ll~d~g~v~Gvv~~~~~-~g~~~~~~AkaVILATGG~g~~y~~ttn~~~~tGDG~~mA~  218 (311)
T d1kf6a2         140 LFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMM-EGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMAL  218 (311)
T ss_dssp             HHHHHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETT-TTEEEEEECSCEEECCCCCGGGSSSBSSCTTCSCHHHHHHH
T ss_pred             HHHHHHccCcceeEeeeEeeeeEecCCcceeEEEEEcC-CCcEEEEECCEEEEcCCCccccccccCCCCCcCcHHHHHHH
Confidence            3445556678999999999998776665 334444433 466677899999999984     22221111        12


Q ss_pred             ccCcccCCCCCeeeCCCCCCCCCCEEEecccCC
Q psy14927       1019 EIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIH 1051 (1074)
Q Consensus      1019 ~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~ 1051 (1074)
                      ..|.++.+-++|.++++..++.|++|++|++..
T Consensus       219 ~aGa~l~dme~iq~~p~~~~~~~~~~~~~~~~~  251 (311)
T d1kf6a2         219 SHGVPLRDMGGIETDQNCETRIKGLFAVGECSS  251 (311)
T ss_dssp             TTTCCEESCCEEECCTTSBCSSBTEEECGGGEE
T ss_pred             hcccceeecccccccccchhcccCCCcCcceee
Confidence            345555566788899988899999999999864

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=93.41  E-value=0.038  Score=49.81  Aligned_cols=87  Identities=17%  Similarity=0.175  Sum_probs=53.8

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEe
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKIT  867 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~i  867 (1074)
                      .++|+|||||-..+..|..|++     +++.+.+.....              ..+...+.+.....+|.++.+ .+..+
T Consensus        27 ~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~~~--------------~~~~~~~~~~~~~~~i~~~~~~~v~~i   92 (126)
T d1trba2          27 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAE--------------KILIKRLMDKVENGNIILHTNRTLEEV   92 (126)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCCC--------------HHHHHHHHHHHHTSSEEEECSCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecccccch--------------hHHHHHHHHhhcccceeEecceEEEEE
Confidence            3449999999999999999998     333332221100              112223444555678998888 45565


Q ss_pred             cCCe--E-EEEeCC---CC-eeEEEcCeEEEccC
Q psy14927        868 GPNT--V-TVIKSD---GS-TEEVKTKNILIATG  894 (1074)
Q Consensus       868 d~~~--~-~v~~~~---G~-~~~i~~d~lIIATG  894 (1074)
                      ..+.  + .|++.+   ++ .+++..|.|+|+.|
T Consensus        93 ~G~~~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG  126 (126)
T d1trba2          93 TGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIG  126 (126)
T ss_dssp             EECSSSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred             ECCCCceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence            4421  2 244432   22 25799999999987

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.37  E-value=0.086  Score=52.57  Aligned_cols=48  Identities=15%  Similarity=0.259  Sum_probs=33.5

Q ss_pred             CCCEEEeCceEEEEEecCCe---EEEEEeecc-----------CCCCceEEEcCEEEEccCC
Q psy14927        961 QGMQFKLGTKVTGASKSGDN---ITVTIENVK-----------DPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus       961 ~gV~i~~~~~v~~i~~~~~~---~~v~~~~~~-----------~~g~~~~i~~D~vi~a~G~ 1008 (1074)
                      .+|.+.+...+.++.+++++   ..+++....           .+|+..+++||+||.|+|+
T Consensus       164 ~~i~~~f~~~p~~i~~~~~g~~v~~v~~~~~~~~~~~~~~~~~~tg~~~~ipadlVi~AiGf  225 (225)
T d1cjca1         164 RAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGY  225 (225)
T ss_dssp             EEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCE
T ss_pred             cceEEEeecccccccccCCCCeEEEEEEEEeEECCCCCCCcccCCCcEEEEECCEEEECCCC
Confidence            56899999999999986543   223332110           1355678999999999996

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=93.35  E-value=0.14  Score=53.30  Aligned_cols=56  Identities=18%  Similarity=0.259  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHhCCC--EEEeCceEEEEEecC--CeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927        948 GEVAKQFQRILGKQGM--QFKLGTKVTGASKSG--DNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus       948 ~~~~~~~~~~l~~~gV--~i~~~~~v~~i~~~~--~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
                      +++.+++....++.++  .|.++++|+++.-++  +.-.|++.+      +.+..+|.||+|+|.-
T Consensus        85 ~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~------~~~~~~~~~i~atG~l  144 (298)
T d1w4xa1          85 PEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNH------GDRIRARYLIMASGQL  144 (298)
T ss_dssp             HHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETT------CCEEEEEEEEECCCSC
T ss_pred             chHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeecccc------ccccccceEEEeeccc
Confidence            4667778888888898  599999999997432  345666544      4679999999999963

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.07  E-value=0.64  Score=48.40  Aligned_cols=82  Identities=2%  Similarity=-0.153  Sum_probs=53.5

Q ss_pred             CCChHHHHHHHHHHHhcc--CHHHHHHHHHHh-----hChhhhh----hHhhccCCHHHHHHHHH-----hcCChHHHHH
Q psy14927         47 SKDPVLLKWWAQYIESTE--DMDLAMKYYEEA-----RDYLSMV----RVLCFLQDFSRAAELAN-----ASGDTAAAYH  110 (1074)
Q Consensus        47 ~~~~~l~~~~a~~~e~~~--~~~~A~~~y~~a-----~d~~~~v----r~l~~~~~~~~a~~i~~-----~~~~~~~~~~  110 (1074)
                      ++++..|...+..+...+  ++++|..++.++     +++....    .++...+++++|.+..+     .+.+..+.+.
T Consensus       104 pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~  183 (334)
T d1dcea1         104 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHY  183 (334)
T ss_dssp             TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHH
T ss_pred             CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHH
Confidence            566777777776666655  478888888774     1222222    22455777877777665     3456777788


Q ss_pred             HHHHHHhcCChHHHHHHH
Q psy14927        111 LARQYENSGQFDEAIHFY  128 (1074)
Q Consensus       111 la~~~~~~g~~~~Ai~~y  128 (1074)
                      +|..+.+.|++++|+..|
T Consensus       184 l~~~~~~~~~~~~A~~~~  201 (334)
T d1dcea1         184 RSCLLPQLHPQPDSGPQG  201 (334)
T ss_dssp             HHHHHHHHSCCCCSSSCC
T ss_pred             HHHHHHHhcCHHHHHHHH
Confidence            888888888887775433

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=92.85  E-value=0.32  Score=45.51  Aligned_cols=83  Identities=13%  Similarity=0.144  Sum_probs=60.0

Q ss_pred             hHHHHHHHHHHHHhhhcHHHHHHHHHHhhC-----------------------HHHHHHHHHHcCCHHHHHHHHH-----
Q psy14927        623 YRVLLKWWAQYIESTEDMDLAMKYYEEARD-----------------------YLSMVRVLCFLQDFSRAAELAN-----  674 (1074)
Q Consensus       623 ~~~l~~~~a~~~e~~~~~~~A~~~y~~ag~-----------------------~~~ai~~~~~~~~~~~a~~v~~-----  674 (1074)
                      .-+..+..|..+-..|+|.+|..+|.+|=.                       +-+.-.||..+++|++|++.+.     
T Consensus        14 ~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l   93 (168)
T d1kt1a1          14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL   93 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc
Confidence            335667788888888899999999866621                       1124456888999999997773     


Q ss_pred             hcCCcHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy14927        675 ASGDTAAAYHLARQYENSGQFDEAIHFYSVA  705 (1074)
Q Consensus       675 ~~~~~~~~~~~A~~~~~~g~~~~A~~~~~ka  705 (1074)
                      .++........|..+...|+|++|+.+|-++
T Consensus        94 ~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~a  124 (168)
T d1kt1a1          94 DSANEKGLYRRGEAQLLMNEFESAKGDFEKV  124 (168)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            2333444448899999999999999988764

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.72  E-value=0.14  Score=53.76  Aligned_cols=75  Identities=7%  Similarity=0.060  Sum_probs=60.7

Q ss_pred             CCChHHHHHHHHHHHhccCHHHHHHHHHHhhC--------hhhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHH
Q psy14927         47 SKDPVLLKWWAQYIESTEDMDLAMKYYEEARD--------YLSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLAR  113 (1074)
Q Consensus        47 ~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d--------~~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~  113 (1074)
                      +++...|...|..++..|++++|+++|.++=.        |.+...++..+|++++|.+..+     ++.+..+.+.++.
T Consensus       109 p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~  188 (315)
T d2h6fa1         109 PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYF  188 (315)
T ss_dssp             TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHH
Confidence            56788999999999999999999999998644        3445667888999999988665     4677888889998


Q ss_pred             HHHhcCCh
Q psy14927        114 QYENSGQF  121 (1074)
Q Consensus       114 ~~~~~g~~  121 (1074)
                      .+.+.|.+
T Consensus       189 ~l~~~~~~  196 (315)
T d2h6fa1         189 VISNTTGY  196 (315)
T ss_dssp             HHHHTTCS
T ss_pred             HHHHcccc
Confidence            88877764

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.46  E-value=0.17  Score=42.55  Aligned_cols=35  Identities=11%  Similarity=0.199  Sum_probs=27.9

Q ss_pred             ChHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHh
Q psy14927        104 DTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQ  144 (1074)
Q Consensus       104 ~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~  144 (1074)
                      +.+.|+.+|+.+-++|++++|++.|      ++|+++....
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~------~~Al~~~~~~   38 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWM------EQALRQLDEG   38 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHH------HHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHH------HHHHHHHhhh
Confidence            4567999999999999999999986      4566554443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.88  E-value=0.36  Score=45.87  Aligned_cols=78  Identities=12%  Similarity=-0.056  Sum_probs=56.7

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHhhCh------------------------------hhhhhHhhccCCHHHHHHHHH---
Q psy14927         54 KWWAQYIESTEDMDLAMKYYEEARDY------------------------------LSMVRVLCFLQDFSRAAELAN---  100 (1074)
Q Consensus        54 ~~~a~~~e~~~~~~~A~~~y~~a~d~------------------------------~~~vr~l~~~~~~~~a~~i~~---  100 (1074)
                      ..-|..+...|++++|.++|.+|=+.                              .....++..+|++++|...++   
T Consensus        15 ~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al   94 (179)
T d2ff4a2          15 KTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALT   94 (179)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence            34466677788888888888775332                              344555777888888887766   


Q ss_pred             --hcCChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927        101 --ASGDTAAAYHLARQYENSGQFDEAIHFYSVA  131 (1074)
Q Consensus       101 --~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a  131 (1074)
                        ++.+..+...+++.|...|+..+|++.|.++
T Consensus        95 ~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          95 FEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence              3567777888888888888888888887765

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.79  E-value=0.52  Score=43.92  Aligned_cols=49  Identities=18%  Similarity=0.194  Sum_probs=34.3

Q ss_pred             HHHHHHcCCHHHHHHHHH----hcCC-cHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy14927        657 VRVLCFLQDFSRAAELAN----ASGD-TAAAYHLARQYENSGQFDEAIHFYSVA  705 (1074)
Q Consensus       657 i~~~~~~~~~~~a~~v~~----~~~~-~~~~~~~A~~~~~~g~~~~A~~~~~ka  705 (1074)
                      -.+|.++++|++|+..+.    ..+. ...-..+|..+...|+++.|++.|.++
T Consensus        84 a~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~a  137 (169)
T d1ihga1          84 GACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKA  137 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHH
Confidence            355777888888887663    2233 333348888888888888888888765

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.62  E-value=0.13  Score=46.37  Aligned_cols=82  Identities=10%  Similarity=0.087  Sum_probs=51.8

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEe
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKIT  867 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~i  867 (1074)
                      .+.|+|||||-+.+..|+.|++     +++.+.+.+...          ...       ..+.....+|+++++ ++..+
T Consensus        34 gk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra~----------~~~-------~~~l~~~~nI~v~~~~~v~~i   96 (130)
T d1vdca2          34 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRAS----------KIM-------QQRALSNPKIDVIWNSSVVEA   96 (130)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCSC----------HHH-------HHHHHTCTTEEEECSEEEEEE
T ss_pred             CCEEEEEcCchHHHHHHHHHhCCCCcEEEEEeccccccc----------hhh-------hhccccCCceEEEeccEEEEE
Confidence            3459999999999999999998     344333322110          001       223334568999998 45555


Q ss_pred             cCC----e---EEEE-eCCCCeeEEEcCeEEEc
Q psy14927        868 GPN----T---VTVI-KSDGSTEEVKTKNILIA  892 (1074)
Q Consensus       868 d~~----~---~~v~-~~~G~~~~i~~d~lIIA  892 (1074)
                      ..+    .   +++. ..+|+..++..|.|+||
T Consensus        97 ~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVa  129 (130)
T d1vdca2          97 YGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFA  129 (130)
T ss_dssp             EESSSSSSEEEEEEEETTTCCEEEEECSEEEEC
T ss_pred             EccCCcccEEEEEEEECCCCCEEEEECCEEEEE
Confidence            432    1   2222 25676788999999997

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=91.53  E-value=0.61  Score=42.74  Aligned_cols=78  Identities=22%  Similarity=0.199  Sum_probs=50.9

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHhhC------------------------HHHHHHHHHHcCCHHHHHHHHH----hcCC-
Q psy14927        628 KWWAQYIESTEDMDLAMKYYEEARD------------------------YLSMVRVLCFLQDFSRAAELAN----ASGD-  678 (1074)
Q Consensus       628 ~~~a~~~e~~~~~~~A~~~y~~ag~------------------------~~~ai~~~~~~~~~~~a~~v~~----~~~~-  678 (1074)
                      +..|.-.-..|+|.+|+..|.+|=+                        +-+...+|..+++|++|++.+.    ..+. 
T Consensus        21 ~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~  100 (153)
T d2fbna1          21 KEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN  100 (153)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccchh
Confidence            3344444456677777777766521                        1234455788888888887773    2333 


Q ss_pred             cHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy14927        679 TAAAYHLARQYENSGQFDEAIHFYSVA  705 (1074)
Q Consensus       679 ~~~~~~~A~~~~~~g~~~~A~~~~~ka  705 (1074)
                      ...-..+|..+...|+++.|..+|.++
T Consensus       101 ~ka~~~~g~~~~~lg~~~~A~~~~~~a  127 (153)
T d2fbna1         101 VKALYKLGVANMYFGFLEEAKENLYKA  127 (153)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hhhhHHhHHHHHHcCCHHHHHHHHHHH
Confidence            333338899999999999988888665

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=91.46  E-value=0.11  Score=45.33  Aligned_cols=56  Identities=11%  Similarity=-0.099  Sum_probs=41.8

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHH
Q psy14927         54 KWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSV  130 (1074)
Q Consensus        54 ~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~  130 (1074)
                      -..|..+...|++++|..+|.++=..                     .+.+..+.+.+|..|.+.|++++|+..|.+
T Consensus        20 ~~~g~~~~~~g~~~~A~~~~~~al~~---------------------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~   75 (112)
T d1hxia_          20 MEEGLSMLKLANLAEAALAFEAVCQK---------------------EPEREEAWRSLGLTQAENEKDGLAIIALNH   75 (112)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH---------------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhccc---------------------ccccchhhhhhhhhhhhhhhHHHhhccccc
Confidence            34566677777777777666544222                     345788889999999999999999999865

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=91.42  E-value=0.58  Score=41.72  Aligned_cols=97  Identities=16%  Similarity=0.140  Sum_probs=60.0

Q ss_pred             CHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhh---ChhhhhhH--
Q psy14927         11 DIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEAR---DYLSMVRV--   85 (1074)
Q Consensus        11 ~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~---d~~~~vr~--   85 (1074)
                      ++++|+++|+++-..........+..                        ....++++|.++|.++-   +..+...+  
T Consensus         8 d~~~A~~~~~kaa~~g~~~a~~~l~~------------------------~~~~~~~~a~~~~~~aa~~g~~~a~~~Lg~   63 (133)
T d1klxa_           8 DLKKAIQYYVKACELNEMFGCLSLVS------------------------NSQINKQKLFQYLSKACELNSGNGCRFLGD   63 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCTTHHHHHHT------------------------CTTSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCChhhhhhhcc------------------------ccccCHHHHHHHHhhhhcccchhhhhhHHH
Confidence            68899999999753332222211110                        11234555555555542   22222332  


Q ss_pred             -hhc----cCCHHHHHHHHH---hcCChHHHHHHHHHHHh----cCChHHHHHHHHHh
Q psy14927         86 -LCF----LQDFSRAAELAN---ASGDTAAAYHLARQYEN----SGQFDEAIHFYSVA  131 (1074)
Q Consensus        86 -l~~----~~~~~~a~~i~~---~~~~~~~~~~la~~~~~----~g~~~~Ai~~y~~a  131 (1074)
                       |..    .-|+++|.+..+   +.++..+++.||.+|..    ..|.++|+++|.+|
T Consensus        64 ~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~A  121 (133)
T d1klxa_          64 FYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA  121 (133)
T ss_dssp             HHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             hhhhccccchhhHHHHHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHH
Confidence             221    345778887766   56889999999999986    45899999999886

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=91.23  E-value=0.34  Score=49.31  Aligned_cols=106  Identities=12%  Similarity=0.119  Sum_probs=68.3

Q ss_pred             HHhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChh-hh
Q psy14927          4 EETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYL-SM   82 (1074)
Q Consensus         4 ~~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~-~~   82 (1074)
                      ++..+.|++++|+..|+++-..+                    ++++..+..+++.+...|+|++|.+.|.++-..+ +.
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~--------------------P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~   63 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKAS--------------------PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY   63 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTC--------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHC--------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc
Confidence            46678899999999999976444                    5678999999999999999999999999976442 11


Q ss_pred             hhH-------hhccCCHHHHHHHHHh---cCCh---HHHHHHHHHHHhcCChHHHHHHHH
Q psy14927         83 VRV-------LCFLQDFSRAAELANA---SGDT---AAAYHLARQYENSGQFDEAIHFYS  129 (1074)
Q Consensus        83 vr~-------l~~~~~~~~a~~i~~~---~~~~---~~~~~la~~~~~~g~~~~Ai~~y~  129 (1074)
                      ...       +...+..+++..-.+.   ..++   ......|..+...|+.++|++.+.
T Consensus        64 ~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~  123 (264)
T d1zbpa1          64 LPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELAL  123 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            111       2222222221111111   0112   233455677777788888877654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=90.68  E-value=0.85  Score=41.76  Aligned_cols=77  Identities=21%  Similarity=0.123  Sum_probs=48.4

Q ss_pred             HHHHHHHhhhcHHHHHHHHHHhh--------------------CHHHHHHHHHHcCCHHHHHHHHHh-------c---CC
Q psy14927        629 WWAQYIESTEDMDLAMKYYEEAR--------------------DYLSMVRVLCFLQDFSRAAELANA-------S---GD  678 (1074)
Q Consensus       629 ~~a~~~e~~~~~~~A~~~y~~ag--------------------~~~~ai~~~~~~~~~~~a~~v~~~-------~---~~  678 (1074)
                      +.|.-.-..|+|++|++.|.+|=                    .+.+.-.+|..+++|++|++-+..       .   .+
T Consensus        14 ~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~   93 (156)
T d2hr2a1          14 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ   93 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccc
Confidence            34444555667777777777772                    122445568888888888855421       1   11


Q ss_pred             cH------HHHHHHHHHHhcCCHHHHHHHHHHc
Q psy14927        679 TA------AAYHLARQYENSGQFDEAIHFYSVA  705 (1074)
Q Consensus       679 ~~------~~~~~A~~~~~~g~~~~A~~~~~ka  705 (1074)
                      ..      ....+|..+.+.|++++|++.|-+|
T Consensus        94 ~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~A  126 (156)
T d2hr2a1          94 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKV  126 (156)
T ss_dssp             THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cccchhHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            11      1126688888888888888887665

>d1nhpa3 d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=90.05  E-value=0.067  Score=48.11  Aligned_cols=28  Identities=18%  Similarity=0.420  Sum_probs=25.0

Q ss_pred             cccCCcceEEEEeccCCCcccccccccC
Q psy14927        424 TNNDTDGFVKVLGDKLTDKVLGVHIIGP  451 (1074)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~  451 (1074)
                      ..+.+.|++|++.+++|+++||.|+.+.
T Consensus        46 ~~~~~~g~~Kli~d~~t~~IlG~~ivG~   73 (126)
T d1nhpa3          46 NPDKQKAWFKLVYDPETTQILGAQLMSK   73 (126)
T ss_dssp             CTTCCEEEEEEEECTTTCBEEEEEEEES
T ss_pred             cCCCcceeEEEEEECCCCCEEEEEEEec
Confidence            3477899999999999999999999874

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.42  E-value=0.69  Score=38.53  Aligned_cols=67  Identities=9%  Similarity=0.078  Sum_probs=48.8

Q ss_pred             CcHHHHHHHHHHHhcCCHHHHHHHHHHcCCHHHHHHHhccHHHHHHHHHHhC--CcccHHHHHHHHHHHHHcCCHHHHHH
Q psy14927        678 DTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCGQLDAVESIASELN--VQSDQDLILKCASYFARREHHDRAVQ  755 (1074)
Q Consensus       678 ~~~~~~~~A~~~~~~g~~~~A~~~~~kag~~~~Av~ma~~w~~a~~~A~~~~--~~~~~~~~~~~a~~~~~~~~~~~Ai~  755 (1074)
                      +.+....+|..+.+.|+|+.|+.+|.+|      +++          .....  .....+.+..+|.-+...|++++|++
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~A------l~~----------~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~   67 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQA------LRQ----------LDEGEISTIDKVSVLDYLSYAVYQQGDLDKALL   67 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHH----------HHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHH------HHH----------HhhhhccCccHHHHHHHHhhHHHhcCChHHHHH
Confidence            4566779999999999999999998554      332          22221  12334778888888888888888888


Q ss_pred             HHHHh
Q psy14927        756 MYAIA  760 (1074)
Q Consensus       756 ~y~~a  760 (1074)
                      +|.++
T Consensus        68 ~y~~a   72 (95)
T d1tjca_          68 LTKKL   72 (95)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88765

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=89.15  E-value=0.041  Score=58.58  Aligned_cols=31  Identities=19%  Similarity=0.098  Sum_probs=25.8

Q ss_pred             chhhhhhccccchHHHHHHHhh----------hhhhhcccc
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT----------KLFTQAGDK  824 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~----------~l~e~~~~~  824 (1074)
                      ..+|+||||||+|+++|..|++          ++||+.+.+
T Consensus         7 ~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~   47 (360)
T d1pn0a1           7 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   47 (360)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence            4469999999999999999962          788886644

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.64  E-value=0.32  Score=43.09  Aligned_cols=75  Identities=15%  Similarity=0.142  Sum_probs=48.7

Q ss_pred             HHHHHhhhcHHHHHHHHHHh-----hCHHHHHHH---HHH---cCCHHHHHHHHHh---cCC-cH---HHHHHHHHHHhc
Q psy14927        631 AQYIESTEDMDLAMKYYEEA-----RDYLSMVRV---LCF---LQDFSRAAELANA---SGD-TA---AAYHLARQYENS  692 (1074)
Q Consensus       631 a~~~e~~~~~~~A~~~y~~a-----g~~~~ai~~---~~~---~~~~~~a~~v~~~---~~~-~~---~~~~~A~~~~~~  692 (1074)
                      +..+-+.++|++|++.|.++     .+++--.++   +.+   .+++++|+++.+.   .++ ..   ....+|..+.+.
T Consensus         6 ~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~   85 (122)
T d1nzna_           6 LNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL   85 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHH
Confidence            44555677888888888887     333333333   333   3355568777753   122 21   233889999999


Q ss_pred             CCHHHHHHHHHHc
Q psy14927        693 GQFDEAIHFYSVA  705 (1074)
Q Consensus       693 g~~~~A~~~~~ka  705 (1074)
                      |+|++|+++|-++
T Consensus        86 g~~~~A~~~~~~a   98 (122)
T d1nzna_          86 KEYEKALKYVRGL   98 (122)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHH
Confidence            9999999998776

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.35  E-value=1.3  Score=41.83  Aligned_cols=78  Identities=12%  Similarity=-0.008  Sum_probs=52.7

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHh-----h-------------------------CHHHHHHHHHHcCCHHHHHHHHH---
Q psy14927        628 KWWAQYIESTEDMDLAMKYYEEA-----R-------------------------DYLSMVRVLCFLQDFSRAAELAN---  674 (1074)
Q Consensus       628 ~~~a~~~e~~~~~~~A~~~y~~a-----g-------------------------~~~~ai~~~~~~~~~~~a~~v~~---  674 (1074)
                      ...|...-..|++++|..+|.+|     |                         -+.+..+++..+++|++|++.++   
T Consensus        15 ~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al   94 (179)
T d2ff4a2          15 KTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALT   94 (179)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence            33455566666777777766665     1                         13566777888888888887774   


Q ss_pred             -hcCCcHHHH-HHHHHHHhcCCHHHHHHHHHHc
Q psy14927        675 -ASGDTAAAY-HLARQYENSGQFDEAIHFYSVA  705 (1074)
Q Consensus       675 -~~~~~~~~~-~~A~~~~~~g~~~~A~~~~~ka  705 (1074)
                       ..+..+... .++..|...|++++|.+.|-++
T Consensus        95 ~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          95 FEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence             233344444 7788888888888888888775

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=87.70  E-value=0.4  Score=47.17  Aligned_cols=22  Identities=18%  Similarity=0.043  Sum_probs=19.7

Q ss_pred             chhhhhhccccchHHHHHHHhh
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT  815 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~  815 (1074)
                      .|+|+|||+|..|+..|..++.
T Consensus        32 gK~V~VvG~G~Sa~dia~~~~~   53 (235)
T d1w4xa2          32 GQRVGVIGTGSSGIQVSPQIAK   53 (235)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCccHHHHHHHHHh
Confidence            4559999999999999999987

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.10  E-value=0.39  Score=47.17  Aligned_cols=46  Identities=20%  Similarity=0.257  Sum_probs=27.9

Q ss_pred             CEEEeCceEEEEEecCCeEEEEEeec----c--------CCCCceEEEcCEEEEccCC
Q psy14927        963 MQFKLGTKVTGASKSGDNITVTIENV----K--------DPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus       963 V~i~~~~~v~~i~~~~~~~~v~~~~~----~--------~~g~~~~i~~D~vi~a~G~ 1008 (1074)
                      +.+.+......+.+++....+++...    +        ++|+...|+||+||.|+|+
T Consensus       159 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~d~~g~~~~~~~g~~~~i~~dlvi~AIGy  216 (216)
T d1lqta1         159 MVFRFLTSPIEIKGKRKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGY  216 (216)
T ss_dssp             EEEECSEEEEEEECSSSCCEEEEEEEEEEECSSSSEEEEEEEEEEEEECSEEEECSCE
T ss_pred             eeeeeccccccccccCceeEEEEEEEEEeeCCCCCeeeecCCcEEEEECCEEEECCCC
Confidence            66666666777766543322222110    0        1255678999999999996

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=86.29  E-value=0.53  Score=46.85  Aligned_cols=101  Identities=19%  Similarity=0.206  Sum_probs=66.6

Q ss_pred             hhhhhhccccchHHHHHHHhh-----hhhhhccccccccc--------------hhhh----------h-----------
Q psy14927        795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLN--------------LETM----------M-----------  834 (1074)
Q Consensus       795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~--------------~~~~----------~-----------  834 (1074)
                      .+|+||||||+|+.||+.|++     +++|+.+..++...              ...+          .           
T Consensus         3 yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (251)
T d2i0za1           3 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNED   82 (251)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhhhhhHH
Confidence            359999999999999999999     78887665443110              0000          0           


Q ss_pred             --hhhh------------------HHHhhhhhhHHHHhhhCCeEEEee-eEEEec--CCe-EEEEeCCCCeeEEEcCeEE
Q psy14927        835 --GTKS------------------AAVKALTGGIAHLFKSNKVTQLNG-HGKITG--PNT-VTVIKSDGSTEEVKTKNIL  890 (1074)
Q Consensus       835 --~~~~------------------~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id--~~~-~~v~~~~G~~~~i~~d~lI  890 (1074)
                        ....                  .....+...+.+.+++.||+++.+ +|+.+.  .+. ..|++++|  ..+++|+||
T Consensus        83 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g--~~i~a~~vI  160 (251)
T d2i0za1          83 IITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTG--EVLETNHVV  160 (251)
T ss_dssp             HHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTC--CEEECSCEE
T ss_pred             HHHHHHhcCCccccccccceecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeCCC--CeEecCeEE
Confidence              0000                  000123334566677889999999 466654  333 34677888  689999999


Q ss_pred             EccCCCC
Q psy14927        891 IATGSEV  897 (1074)
Q Consensus       891 IATG~~p  897 (1074)
                      +|||+..
T Consensus       161 ~AtGg~S  167 (251)
T d2i0za1         161 IAVGGKS  167 (251)
T ss_dssp             ECCCCSS
T ss_pred             EccCCcc
Confidence            9999875

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.40  E-value=0.25  Score=55.41  Aligned_cols=94  Identities=11%  Similarity=0.050  Sum_probs=50.8

Q ss_pred             CChHHHHHHHHHHHhccCHHHHHHHHHHhhCh------hhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHH
Q psy14927         48 KDPVLLKWWAQYIESTEDMDLAMKYYEEARDY------LSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYE  116 (1074)
Q Consensus        48 ~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~------~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~  116 (1074)
                      ++...+..+|......|+++.|...|.++-..      ..+..++...|++++|....+     .+.+....+++|..+.
T Consensus       118 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~  197 (497)
T d1ya0a1         118 PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS  197 (497)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH
T ss_pred             hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence            44556667788888899999998887765332      233334677889999887765     3567778889999999


Q ss_pred             hcCChHHHHHHHHHhCChHHHHHHH
Q psy14927        117 NSGQFDEAIHFYSVAGSCGNAVRLC  141 (1074)
Q Consensus       117 ~~g~~~~Ai~~y~~a~~~~~A~~la  141 (1074)
                      ..|+..+|+.+|.+|-+.+.=|.-|
T Consensus       198 ~~~~~~~A~~~y~ral~~~~~~~~a  222 (497)
T d1ya0a1         198 SKGDHLTTIFYYCRSIAVKFPFPAA  222 (497)
T ss_dssp             HTTCHHHHHHHHHHHHSSSBCCHHH
T ss_pred             HcCCHHHHHHHHHHHHhCCCCCHHH
Confidence            9999999999999987655444333

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.27  E-value=0.1  Score=55.04  Aligned_cols=66  Identities=2%  Similarity=-0.144  Sum_probs=39.1

Q ss_pred             CCHHHHHHHHHHcCcccchh-hh-Hh--------hhcHHHHHHHhhc-----CCChHHHHHHHHHHHhccCHHHHHHHHH
Q psy14927         10 GDIDRAIRMFEKAETHQQHV-PR-ML--------LENTDKLEKYIIQ-----SKDPVLLKWWAQYIESTEDMDLAMKYYE   74 (1074)
Q Consensus        10 g~~~eA~~~Ye~~~~~~~~~-~~-~~--------~~~~~~~~~~~~~-----~~~~~l~~~~a~~~e~~~~~~~A~~~y~   74 (1074)
                      +++++|+..++++-..+..- .. .+        .+.+..+-++..+     +++...|..+|..+...|++++|...|.
T Consensus       123 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~  202 (334)
T d1dcea1         123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR  202 (334)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred             ccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            46899999999985444221 11 11        1234444444433     4566777777777777777776655444


Q ss_pred             H
Q psy14927         75 E   75 (1074)
Q Consensus        75 ~   75 (1074)
                      .
T Consensus       203 ~  203 (334)
T d1dcea1         203 L  203 (334)
T ss_dssp             S
T ss_pred             H
Confidence            3

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=85.26  E-value=0.37  Score=48.38  Aligned_cols=102  Identities=16%  Similarity=0.149  Sum_probs=64.3

Q ss_pred             chhhhhhccccchHHHHHHHhh-----hhhhhcccccccc--------ch-------h-----------hhhh-hh-hHH
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL--------NL-------E-----------TMMG-TK-SAA  840 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~--------~~-------~-----------~~~~-~~-~~~  840 (1074)
                      +.+|+||||||+|+.||+.|++     +++|+.+..|..+        ++       .           .... .. ...
T Consensus         4 ~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~~~~~~   83 (253)
T d2gqfa1           4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDF   83 (253)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhhhcccch
Confidence            4469999999999999999999     7888877654211        00       0           0000 00 000


Q ss_pred             ------------------------HhhhhhhHHHHhhhCCeEEEee-eEEEecC--C--eE-EEEeCCCCeeEEEcCeEE
Q psy14927        841 ------------------------VKALTGGIAHLFKSNKVTQLNG-HGKITGP--N--TV-TVIKSDGSTEEVKTKNIL  890 (1074)
Q Consensus       841 ------------------------~~~l~~~~~~~l~~~gV~~~~g-~v~~id~--~--~~-~v~~~~G~~~~i~~d~lI  890 (1074)
                                              ...+...+...+++.||+++++ .|+.+..  +  .. .++..++  .++++|+||
T Consensus        84 ~~~~~~~g~~~~~~~~~~~~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~--~~~~a~~VI  161 (253)
T d2gqfa1          84 ISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNS--TQWQCKNLI  161 (253)
T ss_dssp             HHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETT--EEEEESEEE
T ss_pred             hhhhhhcCcceeeecCCccccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCC--EEEEeCEEE
Confidence                                    0123344566677789999999 4665532  2  11 1233455  589999999


Q ss_pred             EccCCCC
Q psy14927        891 IATGSEV  897 (1074)
Q Consensus       891 IATG~~p  897 (1074)
                      ||||+.+
T Consensus       162 iAtGG~S  168 (253)
T d2gqfa1         162 VATGGLS  168 (253)
T ss_dssp             ECCCCSS
T ss_pred             EcCCccc
Confidence            9999975

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=83.59  E-value=0.54  Score=47.69  Aligned_cols=50  Identities=12%  Similarity=0.222  Sum_probs=39.5

Q ss_pred             hhhhHHHHhhhCCeEEEee-eEEEec--CCeEEEEeCCCCeeEEEcCeEEEccCCC
Q psy14927        844 LTGGIAHLFKSNKVTQLNG-HGKITG--PNTVTVIKSDGSTEEVKTKNILIATGSE  896 (1074)
Q Consensus       844 l~~~~~~~l~~~gV~~~~g-~v~~id--~~~~~v~~~~G~~~~i~~d~lIIATG~~  896 (1074)
                      +...+.+.+++.||+++.+ .|+.+.  .+.+.|.+++|   ++.+|.||+|+|+.
T Consensus       152 ~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~V~t~~g---~i~a~~VViAaG~~  204 (281)
T d2gf3a1         152 CIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANG---SYTADKLIVSMGAW  204 (281)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE---EEEEEEEEECCGGG
T ss_pred             cccccccccccccccccCCcEEEEEEEECCEEEEEECCc---EEEcCEEEECCCCc
Confidence            3444667778889999998 577664  56678888887   69999999999985

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.41  E-value=0.38  Score=53.79  Aligned_cols=106  Identities=9%  Similarity=-0.012  Sum_probs=45.6

Q ss_pred             HHHhccCHHHHHHHHHHhhC--------hhhhhhHhhccCCHHHHHHHHHh---cCChHHHHHHHHHHHhcCChHHHHHH
Q psy14927         59 YIESTEDMDLAMKYYEEARD--------YLSMVRVLCFLQDFSRAAELANA---SGDTAAAYHLARQYENSGQFDEAIHF  127 (1074)
Q Consensus        59 ~~e~~~~~~~A~~~y~~a~d--------~~~~vr~l~~~~~~~~a~~i~~~---~~~~~~~~~la~~~~~~g~~~~Ai~~  127 (1074)
                      ..+..+.|+.|+..|.++=+        +.+....+...|+.++|..-.+.   .....+...+|..+...|++++|+++
T Consensus        95 l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~  174 (497)
T d1ya0a1          95 LEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESY  174 (497)
T ss_dssp             HHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHH
Confidence            34456667777666654322        22333335555565555432211   01123455777888888888888877


Q ss_pred             HHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHcc-CChhHHHHHHHHh
Q psy14927        128 YSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLET-IEPDKAVLLYHKA  184 (1074)
Q Consensus       128 y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~-~~~~~A~~ly~ka  184 (1074)
                      |.+|      +++             .| .....+...|..+.. +++.+|+.+|.||
T Consensus       175 y~~A------~~l-------------~P-~~~~~~~~Lg~~~~~~~~~~~A~~~y~ra  212 (497)
T d1ya0a1         175 YRHA------AQL-------------VP-SNGQPYNQLAILASSKGDHLTTIFYYCRS  212 (497)
T ss_dssp             HHHH------HHH-------------CT-TBSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHH------HHH-------------CC-CchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            6653      221             12 112334445555544 5566666666654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=83.16  E-value=20  Score=34.46  Aligned_cols=138  Identities=17%  Similarity=0.156  Sum_probs=88.5

Q ss_pred             hHHHHHHHHHHHHhhhcHHHHHHHHHHh---hCHHHHHHH---HHH----cCCHHHHHHHHH---hcCCcHHHHHHHHHH
Q psy14927        623 YRVLLKWWAQYIESTEDMDLAMKYYEEA---RDYLSMVRV---LCF----LQDFSRAAELAN---ASGDTAAAYHLARQY  689 (1074)
Q Consensus       623 ~~~l~~~~a~~~e~~~~~~~A~~~y~~a---g~~~~ai~~---~~~----~~~~~~a~~v~~---~~~~~~~~~~~A~~~  689 (1074)
                      +|+-....|.....++++.+|.++|.+|   |+.+.-..+   |..    ..+...|....+   ..+.......++..+
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~   80 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLY   80 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhcccccc
Confidence            4777778888999999999999999999   877766555   444    568888886663   344455555777766


Q ss_pred             Hh----cCCHHHHHHHHHHc---CCHHHHHHH----------hccHHHHHHHHHHhCCcccHHHHHHHHHHHHH----cC
Q psy14927        690 EN----SGQFDEAIHFYSVA---GSCGNAVRL----------CGQLDAVESIASELNVQSDQDLILKCASYFAR----RE  748 (1074)
Q Consensus       690 ~~----~g~~~~A~~~~~ka---g~~~~Av~m----------a~~w~~a~~~A~~~~~~~~~~~~~~~a~~~~~----~~  748 (1074)
                      ..    ..+++.|..+|..+   |.+.....+          -.....+........+....+....++..+..    ..
T Consensus        81 ~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~  160 (265)
T d1ouva_          81 YSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPK  160 (265)
T ss_dssp             HHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC
T ss_pred             ccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCCCccc
Confidence            64    46788888888776   344333333          13344444444444455555666666766643    33


Q ss_pred             CHHHHHHHHHHh
Q psy14927        749 HHDRAVQMYAIA  760 (1074)
Q Consensus       749 ~~~~Ai~~y~~a  760 (1074)
                      ++..+...+..+
T Consensus       161 ~~~~~~~~~~~a  172 (265)
T d1ouva_         161 DLKKALASYDKA  172 (265)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             ccccchhhhhcc
Confidence            444555555543

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=82.88  E-value=0.12  Score=51.58  Aligned_cols=20  Identities=5%  Similarity=-0.006  Sum_probs=18.9

Q ss_pred             hhhhhccccchHHHHHHHhh
Q psy14927        796 VVLNTLGNCAAVQANYHLAT  815 (1074)
Q Consensus       796 ~VviiGgG~AGl~aA~~la~  815 (1074)
                      +|+|||||++|+++|++|++
T Consensus         2 kV~VIGaGi~GlstA~~L~~   21 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHE   21 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHH
T ss_pred             EEEEECchHHHHHHHHHHHH
Confidence            38999999999999999998

>d1onfa3 d.87.1.1 (A:377-495) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=82.79  E-value=0.35  Score=42.61  Aligned_cols=65  Identities=20%  Similarity=0.141  Sum_probs=53.4

Q ss_pred             EeccchhhccHHHH-hcccccccc----cc--ccccccccccccCCcceEEEEeccCCCcccccccccCCCc
Q psy14927        390 LPVEKWTLLSLARV-LEGIEYKVG----KF--PFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPGIE  454 (1074)
Q Consensus       390 ~~~~~~~~~~~~~~-~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~  454 (1074)
                      -|.+|+|||||+|| ++|.++.++    ++  ++.++.|+...+...|++|++.+.+|+++||.|+.+.+..
T Consensus        11 ~PeiA~VGlte~~A~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~IlGa~ivG~~A~   82 (119)
T d1onfa3          11 HPPIGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYLKLVCVGKDELIKGLHIIGLNAD   82 (119)
T ss_dssp             SSCEEEEECCHHHHHHHTCGGGEEEEEEEECCGGGTTSCSCGGGSCCEEEEEEEETTTTEEEEEEEESTTHH
T ss_pred             CCccEEEECCHHHHHHhcccccccccccccCccccchhhhhhccCCCceEEEEEecCCCcEEEEEEeCCCHH
Confidence            38999999999999 666654443    22  3456778888899999999999999999999999988754

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=82.48  E-value=2.1  Score=42.28  Aligned_cols=47  Identities=6%  Similarity=0.143  Sum_probs=38.4

Q ss_pred             hCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccC
Q psy14927        960 KQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYT 1012 (1074)
Q Consensus       960 ~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 1012 (1074)
                      ..++.++.+..+..+...++++.+++.+      +.++.+|.+|.|.|.....
T Consensus       108 ~~~~~~~~~~~v~~~~~~~~~v~v~~~d------G~~~~~d~~v~adG~~s~~  154 (265)
T d2voua1         108 FGPERYHTSKCLVGLSQDSETVQMRFSD------GTKAEANWVIGADGGASVV  154 (265)
T ss_dssp             HCSTTEETTCCEEEEEECSSCEEEEETT------SCEEEESEEEECCCTTCHH
T ss_pred             cccceeecCcEEEEEEeeCCceEEEECC------CCEEEEEEEeccccccccc
Confidence            4578899999999999887888888765      4589999999999976543

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=81.27  E-value=0.49  Score=47.84  Aligned_cols=50  Identities=10%  Similarity=0.060  Sum_probs=38.6

Q ss_pred             hhhHHHHhhhCCeEEEee-eEEEec--CCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927        845 TGGIAHLFKSNKVTQLNG-HGKITG--PNTVTVIKSDGSTEEVKTKNILIATGSEV  897 (1074)
Q Consensus       845 ~~~~~~~l~~~gV~~~~g-~v~~id--~~~~~v~~~~G~~~~i~~d~lIIATG~~p  897 (1074)
                      ...+.+.+++.|++|+.+ .|+.+.  .+...|.+++|   ++.+|.||+|||...
T Consensus       154 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g---~i~a~~vV~AaG~~s  206 (276)
T d1ryia1         154 CKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG---DVWANHVVVASGVWS  206 (276)
T ss_dssp             HHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE---EEEEEEEEECCGGGT
T ss_pred             hhHHHHHHHHcCCEEecceEEEeEEeecceEEEecCCe---EEEcCEEEECCCccH
Confidence            344666778899999998 576665  35567777776   799999999999864

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=81.02  E-value=0.43  Score=41.09  Aligned_cols=22  Identities=27%  Similarity=0.223  Sum_probs=19.7

Q ss_pred             chhhhhhccccchHHHHHHHhh
Q psy14927        794 RQVVLNTLGNCAAVQANYHLAT  815 (1074)
Q Consensus       794 k~~VviiGgG~AGl~aA~~la~  815 (1074)
                      .|+|+|||||..|+..|..|++
T Consensus        32 gK~VlVVG~g~Sa~dia~~l~~   53 (107)
T d2gv8a2          32 GESVLVVGGASSANDLVRHLTP   53 (107)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCHHHHHHHHHH
Confidence            4459999999999999999987