Psyllid ID: psy14938


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90------
FFLRFDLAPIFSEEEFKHWFLPRDGIVYTFVVENDGEITEIILKEGFDVFNALDLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSIPPNKIGLVLQ
ccccccccccccHHHHHHHccccccEEEEEEEEcccHHHHHHHHHcccEEEEEEcccccccccccccccccEEEEEEEEEccccccccccEEEEEc
ccHcccEEEEccHHHHHHHHHccccEEEEEEEEccccEEHHHHHHcccEEEEEccccHHHcccccccEEEEEEEEEEEEccEcccccHccEEEEEc
fflrfdlapifseeefkhwflprdgIVYTFVVENDGEITEIILKEGfdvfnaldlmenkeflgplkfgigdgnlQYYLynwkcpsippnkiglvlq
fflrfdlapifseeefkhwflprDGIVYTFVVENDGEITEIILKEGFDVFNALDLMENKEFLGPLKFGIGDGNLQYYLYNWKcpsippnkiglvlq
FFLRFDLAPIFSEEEFKHWFLPRDGIVYTFVVENDGEITEIILKEGFDVFNALDLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSIPPNKIGLVLQ
*FLRFDLAPIFSEEEFKHWFLPRDGIVYTFVVENDGEITEIILKEGFDVFNALDLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSIPPNKIGL***
FFLRFDLAPIFSEEEFKHWFLPRDGIVYTFVVENDGEITEIILKEGFDVFNALDLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSIPPNKIGLVLQ
FFLRFDLAPIFSEEEFKHWFLPRDGIVYTFVVENDGEITEIILKEGFDVFNALDLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSIPPNKIGLVLQ
FFLRFDLAPIFSEEEFKHWFLPRDGIVYTFVVENDGEITEIILKEGFDVFNALDLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSIPPNKIGLVLQ
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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FFLRFDLAPIFSEEEFKHWFLPRDGIVYTFVVENDGEITEIILKEGFDVFNALDLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSIPPNKIGLVLQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query96 2.2.26 [Sep-21-2011]
Q5RAF3496 Glycylpeptide N-tetradeca yes N/A 1.0 0.193 0.460 4e-27
P30419496 Glycylpeptide N-tetradeca yes N/A 1.0 0.193 0.460 5e-27
Q8K1Q0496 Glycylpeptide N-tetradeca yes N/A 1.0 0.193 0.453 7e-27
O70310496 Glycylpeptide N-tetradeca yes N/A 1.0 0.193 0.453 1e-26
Q9N181498 Glycylpeptide N-tetradeca yes N/A 1.0 0.192 0.460 1e-26
A7YT82492 Glycylpeptide N-tetradeca no N/A 0.968 0.189 0.471 2e-26
O60551498 Glycylpeptide N-tetradeca no N/A 1.0 0.192 0.453 2e-26
O70311529 Glycylpeptide N-tetradeca no N/A 1.0 0.181 0.453 5e-26
O61613472 Glycylpeptide N-tetradeca yes N/A 0.989 0.201 0.4 8e-26
P31717497 Glycylpeptide N-tetradeca no N/A 1.0 0.193 0.457 1e-25
>sp|Q5RAF3|NMT1_PONAB Glycylpeptide N-tetradecanoyltransferase 1 OS=Pongo abelii GN=NMT1 PE=2 SV=1 Back     alignment and function desciption
 Score =  119 bits (299), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 65/141 (46%), Positives = 80/141 (56%), Gaps = 45/141 (31%)

Query: 1   FFLRFDLAPIFSEEEFKHWFLPRDGIVYTFVVEN-DGEITEII----------------- 42
           +  +F L P+ S+EE +HWF P++ I+ TFVVEN +GE+T+ +                 
Sbjct: 356 YLKQFHLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYTLPSTIMNHPTHKS 415

Query: 43  LK---------------------------EGFDVFNALDLMENKEFLGPLKFGIGDGNLQ 75
           LK                           +GFDVFNALDLMENK FL  LKFGIGDGNLQ
Sbjct: 416 LKAAYSFYNVHTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFLEKLKFGIGDGNLQ 475

Query: 76  YYLYNWKCPSIPPNKIGLVLQ 96
           YYLYNWKCPS+   K+GLVLQ
Sbjct: 476 YYLYNWKCPSMGAEKVGLVLQ 496




Adds a myristoyl group to the N-terminal glycine residue of certain cellular and viral proteins.
Pongo abelii (taxid: 9601)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 9EC: 7
>sp|P30419|NMT1_HUMAN Glycylpeptide N-tetradecanoyltransferase 1 OS=Homo sapiens GN=NMT1 PE=1 SV=2 Back     alignment and function description
>sp|Q8K1Q0|NMT1_RAT Glycylpeptide N-tetradecanoyltransferase 1 OS=Rattus norvegicus GN=Nmt1 PE=2 SV=1 Back     alignment and function description
>sp|O70310|NMT1_MOUSE Glycylpeptide N-tetradecanoyltransferase 1 OS=Mus musculus GN=Nmt1 PE=1 SV=1 Back     alignment and function description
>sp|Q9N181|NMT2_BOVIN Glycylpeptide N-tetradecanoyltransferase 2 OS=Bos taurus GN=NMT2 PE=2 SV=1 Back     alignment and function description
>sp|A7YT82|NMT2_DANRE Glycylpeptide N-tetradecanoyltransferase 2 OS=Danio rerio GN=nmt2 PE=2 SV=2 Back     alignment and function description
>sp|O60551|NMT2_HUMAN Glycylpeptide N-tetradecanoyltransferase 2 OS=Homo sapiens GN=NMT2 PE=1 SV=1 Back     alignment and function description
>sp|O70311|NMT2_MOUSE Glycylpeptide N-tetradecanoyltransferase 2 OS=Mus musculus GN=Nmt2 PE=1 SV=1 Back     alignment and function description
>sp|O61613|NMT_DROME Glycylpeptide N-tetradecanoyltransferase OS=Drosophila melanogaster GN=Nmt PE=2 SV=2 Back     alignment and function description
>sp|P31717|NMT1_BOVIN Glycylpeptide N-tetradecanoyltransferase 1 OS=Bos taurus GN=NMT1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query96
350397697 482 PREDICTED: glycylpeptide N-tetradecanoyl 1.0 0.199 0.507 5e-32
307180581 463 Glycylpeptide N-tetradecanoyltransferase 1.0 0.207 0.521 7e-32
307197102 471 Glycylpeptide N-tetradecanoyltransferase 1.0 0.203 0.507 1e-31
322794120 470 hypothetical protein SINV_05754 [Solenop 1.0 0.204 0.514 1e-31
328785078 480 PREDICTED: glycylpeptide N-tetradecanoyl 1.0 0.2 0.507 2e-31
383854607 480 PREDICTED: glycylpeptide N-tetradecanoyl 1.0 0.2 0.507 2e-31
340724412 480 PREDICTED: glycylpeptide N-tetradecanoyl 1.0 0.2 0.5 2e-31
117935431 479 N-myristoyltransferase, putative [Glypta 1.0 0.200 0.492 2e-31
332022547 470 Glycylpeptide N-tetradecanoyltransferase 1.0 0.204 0.507 3e-31
190702234 479 n-myristoyltransferase, putative [Glypta 1.0 0.200 0.485 3e-31
>gi|350397697|ref|XP_003484961.1| PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like [Bombus impatiens] Back     alignment and taxonomy information
 Score =  141 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 71/140 (50%), Positives = 86/140 (61%), Gaps = 44/140 (31%)

Query: 1   FFLRFDLAPIFSEEEFKHWFLPRDGIVYTFVVENDGEITEII-----------------L 43
           +  +FDL PIFS EEF+HWFLP++GI+ +FVVENDG+IT+++                 L
Sbjct: 343 YLEKFDLVPIFSIEEFRHWFLPQNGIINSFVVENDGKITDMVSYYTLPSSIMHHQTHKTL 402

Query: 44  KEG---------------------------FDVFNALDLMENKEFLGPLKFGIGDGNLQY 76
           +                             FDVFNALDLM+NKEFL PLKFGIGDGNLQY
Sbjct: 403 RAAYSFYNVSTATPWLELMTDALISARNLDFDVFNALDLMDNKEFLEPLKFGIGDGNLQY 462

Query: 77  YLYNWKCPSIPPNKIGLVLQ 96
           YLYNW+CPS+ P KIGLVLQ
Sbjct: 463 YLYNWRCPSMTPGKIGLVLQ 482




Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307180581|gb|EFN68536.1| Glycylpeptide N-tetradecanoyltransferase 2 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|307197102|gb|EFN78470.1| Glycylpeptide N-tetradecanoyltransferase 2 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|322794120|gb|EFZ17329.1| hypothetical protein SINV_05754 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|328785078|ref|XP_624861.2| PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Apis mellifera] gi|380022298|ref|XP_003694987.1| PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like [Apis florea] Back     alignment and taxonomy information
>gi|383854607|ref|XP_003702812.1| PREDICTED: glycylpeptide N-tetradecanoyltransferase 2-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|340724412|ref|XP_003400576.1| PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|117935431|gb|ABK57056.1| N-myristoyltransferase, putative [Glyptapanteles indiensis] Back     alignment and taxonomy information
>gi|332022547|gb|EGI62850.1| Glycylpeptide N-tetradecanoyltransferase 1 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|190702234|gb|ACE75132.1| n-myristoyltransferase, putative [Glyptapanteles flavicoxis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query96
UNIPROTKB|B4DXS1310 NMT2 "Glycylpeptide N-tetradec 0.583 0.180 0.754 8.6e-30
UNIPROTKB|F1MZK0496 NMT1 "Glycylpeptide N-tetradec 0.541 0.104 0.826 2.7e-29
UNIPROTKB|E2RPZ9496 NMT1 "Glycylpeptide N-tetradec 0.541 0.104 0.826 2.7e-29
UNIPROTKB|P30419496 NMT1 "Glycylpeptide N-tetradec 0.541 0.104 0.826 2.7e-29
UNIPROTKB|F1RR06496 NMT1 "Glycylpeptide N-tetradec 0.541 0.104 0.826 2.7e-29
RGD|628642496 Nmt1 "N-myristoyltransferase 1 0.541 0.104 0.826 3.4e-29
UNIPROTKB|I3LTH3416 NMT2 "Glycylpeptide N-tetradec 0.583 0.134 0.771 4e-29
UNIPROTKB|J9P9K7411 NMT2 "Glycylpeptide N-tetradec 0.583 0.136 0.771 4.7e-29
MGI|MGI:102579496 Nmt1 "N-myristoyltransferase 1 0.541 0.104 0.826 5.6e-29
ZFIN|ZDB-GENE-030131-717493 nmt2 "N-myristoyltransferase 2 0.583 0.113 0.771 6.6e-29
UNIPROTKB|B4DXS1 NMT2 "Glycylpeptide N-tetradecanoyltransferase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
 Score = 227 (85.0 bits), Expect = 8.6e-30, Sum P(2) = 8.6e-30
 Identities = 43/57 (75%), Positives = 47/57 (82%)

Query:    41 IILK-EGFDVFNALDLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSIPPNKIGLVLQ 96
             I+ K +GFDVFNALDLMENK FL  LKFGIGDGNLQYYLYNW+CP     K+GLVLQ
Sbjct:   254 ILAKSKGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYLYNWRCPGTDSEKVGLVLQ 310


GO:0006499 "N-terminal protein myristoylation" evidence=IEA
GO:0004379 "glycylpeptide N-tetradecanoyltransferase activity" evidence=IEA
UNIPROTKB|F1MZK0 NMT1 "Glycylpeptide N-tetradecanoyltransferase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RPZ9 NMT1 "Glycylpeptide N-tetradecanoyltransferase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P30419 NMT1 "Glycylpeptide N-tetradecanoyltransferase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RR06 NMT1 "Glycylpeptide N-tetradecanoyltransferase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|628642 Nmt1 "N-myristoyltransferase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|I3LTH3 NMT2 "Glycylpeptide N-tetradecanoyltransferase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|J9P9K7 NMT2 "Glycylpeptide N-tetradecanoyltransferase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:102579 Nmt1 "N-myristoyltransferase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-717 nmt2 "N-myristoyltransferase 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9UVX3NMT_ASPFU2, ., 3, ., 1, ., 9, 70.56810.45830.0894yesN/A
Q8TFN1NMT_EMENI2, ., 3, ., 1, ., 9, 70.55810.44790.0872yesN/A
Q553B6NMT_DICDI2, ., 3, ., 1, ., 9, 70.55760.54160.1259yesN/A
P14743NMT_YEAST2, ., 3, ., 1, ., 9, 70.51210.42700.0901yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.3.1LOW CONFIDENCE prediction!
3rd Layer2.3.1.97LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query96
pfam02799190 pfam02799, NMT_C, Myristoyl-CoA:protein N-myristoy 3e-46
COG5092451 COG5092, NMT1, N-myristoyl transferase [Lipid meta 7e-16
>gnl|CDD|202401 pfam02799, NMT_C, Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain Back     alignment and domain information
 Score =  146 bits (370), Expect = 3e-46
 Identities = 62/139 (44%), Positives = 77/139 (55%), Gaps = 47/139 (33%)

Query: 4   RFDLAPIFSEEEFKHWFLPRDGIVYTFVVEN-DGEITE---------------------- 40
           RFDLAP+F++EE  HWFLPR+ +VY++VVEN DG+IT+                      
Sbjct: 52  RFDLAPVFTKEEVAHWFLPRENVVYSYVVENEDGKITDFFSFYSLPSTVIGNPKHKTLKA 111

Query: 41  --------------------IIL--KEGFDVFNALDLMENKEFLGPLKFGIGDGNLQYYL 78
                               +IL    GFDVFNALDLM+NK FL  LKFG GDG L YYL
Sbjct: 112 AYSFYYAATSTRLKQLMNDALILAKNLGFDVFNALDLMDNKLFLEDLKFGPGDGQLNYYL 171

Query: 79  YNWKCPSI--PPNKIGLVL 95
           YN++CP I    + +GLVL
Sbjct: 172 YNYRCPPIMGGISGVGLVL 190


The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. Length = 190

>gnl|CDD|227423 COG5092, NMT1, N-myristoyl transferase [Lipid metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 96
PF02799190 NMT_C: Myristoyl-CoA:protein N-myristoyltransferas 100.0
KOG2779|consensus421 100.0
COG5092451 NMT1 N-myristoyl transferase [Lipid metabolism] 100.0
>PF02799 NMT_C: Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain; InterPro: IPR022677 Myristoyl-CoA:protein N-myristoyltransferase (2 Back     alignment and domain information
Probab=100.00  E-value=1.3e-50  Score=302.44  Aligned_cols=95  Identities=66%  Similarity=1.275  Sum_probs=80.9

Q ss_pred             CcccccceeccChhhheeeeccCCCeEEEEEEecC-Cceeeee-------------------------------------
Q psy14938          1 FFLRFDLAPIFSEEEFKHWFLPRDGIVYTFVVEND-GEITEII-------------------------------------   42 (96)
Q Consensus         1 yl~~f~l~~~fs~eev~Hw~lp~~~Vi~tyVve~~-~~iTDf~-------------------------------------   42 (96)
                      ||+||+++|+||+|||+|||+|+++||||||||++ |+||||+                                     
T Consensus        49 yl~~f~l~~~fs~eev~Hw~lp~~~Vv~syVve~~~~~ITDf~SFY~Lpstvi~~~k~~~l~aAY~fY~~~~~~~l~~Lm  128 (190)
T PF02799_consen   49 YLKKFDLAPVFSEEEVKHWFLPRKNVVYSYVVEDPDGKITDFFSFYSLPSTVIGNPKHKTLKAAYSFYYVATSTRLKELM  128 (190)
T ss_dssp             HHTTSSEEEE--HHHHHHHHS-BTTTEEEEEEEETTSEEEEEEEEEEEEEEESSSSSSSEEEEEEEEEEEESSSHHHHHH
T ss_pred             HHHhcccccccCHHHHHhhcccCCCeEEEEEEecCCCceeeEEEEeecceeecCCCCccceeeeeeeeeeecCCCHHHHH
Confidence            68999999999999999999999999999999998 7999999                                     


Q ss_pred             -------eccCCeEEEeeccccchhccccCcccccceeeeEEEeeccCCCCCC--CceEEEc
Q psy14938         43 -------LKEGFDVFNALDLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSIPP--NKIGLVL   95 (96)
Q Consensus        43 -------k~~gfDVfN~Ld~m~N~~fl~~lkF~~GdG~L~YYLyNw~~~~i~~--~~vglvl   95 (96)
                             |+.|||||||||+|+|++||++||||+|||+|||||||||||+|.+  ++||+||
T Consensus       129 ~DaLi~Ak~~gfDVFNaLd~mdN~~fL~~lKFg~GdG~L~YYLyNwr~~~i~~~~~~vGlVl  190 (190)
T PF02799_consen  129 NDALILAKNEGFDVFNALDLMDNSSFLEDLKFGPGDGNLNYYLYNWRCPPIMGPISKVGLVL  190 (190)
T ss_dssp             HHHHHHHHHTTESEEEEESTTTGGGTTTTTT-EEEEEEEEEEEESEB-----GSBGGBE---
T ss_pred             HHHHHHHHHcCCCEEehhhhccchhhHhhCCccCCCCCeEEEEEeccCCCCCCCccccceeC
Confidence                   8999999999999999999999999999999999999999999875  8999997



3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the C-terminal region.; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 2WUU_A 1IYL_B 1NMT_B 1IYK_A ....

>KOG2779|consensus Back     alignment and domain information
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query96
1rxt_A496 Crystal Structure Of Human Myristoyl-Coa:protein N- 7e-28
3iu1_A383 Crystal Structure Of Human Type-I N-Myristoyltransf 3e-26
2wuu_A421 Structure Of N-Myristoyltransferase From L. Donovan 4e-20
3h5z_A438 Crystal Structure Of Leishmania Major N-Myristoyltr 5e-20
2wsa_A438 Crystal Structure Of Leishmania Major N- Myristoylt 6e-20
4a95_A384 Plasmodium Vivax N-Myristoyltransferase With Quinol 7e-20
4b10_A385 Plasmodium Vivax N-Myristoyltransferase With A Non- 8e-20
1nmt_A392 N-Myristoyl Transferase From Candida Albicans At 2. 7e-08
2p6e_A455 Crystal Structures Of Saccharomyces Cerevisiae N-My 5e-05
2nmt_A422 Myristoyl-Coa:protein N-Myristoyltransferase Bound 6e-05
>pdb|1RXT|A Chain A, Crystal Structure Of Human Myristoyl-Coa:protein N- Myristoyltransferase. Length = 496 Back     alignment and structure

Iteration: 1

Score = 118 bits (296), Expect = 7e-28, Method: Composition-based stats. Identities = 64/141 (45%), Positives = 80/141 (56%), Gaps = 45/141 (31%) Query: 1 FFLRFDLAPIFSEEEFKHWFLPRDGIVYTFVVEN-DGEITEII----------------- 42 + +F L P+ S+EE +HWF P++ I+ TFVVEN +GE+T+ + Sbjct: 356 YLKQFHLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYTLPSTIMNHPTHKS 415 Query: 43 LK---------------------------EGFDVFNALDLMENKEFLGPLKFGIGDGNLQ 75 LK +GFDVFNALDLMENK FL LKFGIGDGNLQ Sbjct: 416 LKAAYSFYNVHTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFLEKLKFGIGDGNLQ 475 Query: 76 YYLYNWKCPSIPPNKIGLVLQ 96 YYLYNWKCPS+ K+G+VLQ Sbjct: 476 YYLYNWKCPSMGAEKVGIVLQ 496
>pdb|3IU1|A Chain A, Crystal Structure Of Human Type-I N-Myristoyltransferase With Bound Myristoyl-Coa Length = 383 Back     alignment and structure
>pdb|2WUU|A Chain A, Structure Of N-Myristoyltransferase From L. Donovani Length = 421 Back     alignment and structure
>pdb|3H5Z|A Chain A, Crystal Structure Of Leishmania Major N-Myristoyltransferase With Bound Myristoyl-Coa Length = 438 Back     alignment and structure
>pdb|2WSA|A Chain A, Crystal Structure Of Leishmania Major N- Myristoyltransferase (Nmt) With Bound Myristoyl-Coa And A Pyrazole Sulphonamide Ligand (Ddd85646) Length = 438 Back     alignment and structure
>pdb|4A95|A Chain A, Plasmodium Vivax N-Myristoyltransferase With Quinoline Inhibitor Length = 384 Back     alignment and structure
>pdb|4B10|A Chain A, Plasmodium Vivax N-Myristoyltransferase With A Non- Hydrolysable Co-Factor Length = 385 Back     alignment and structure
>pdb|1NMT|A Chain A, N-Myristoyl Transferase From Candida Albicans At 2.45 A Length = 392 Back     alignment and structure
>pdb|2P6E|A Chain A, Crystal Structures Of Saccharomyces Cerevisiae N-Myristoyltransferase With Bound Myristoyl-Coa Length = 455 Back     alignment and structure
>pdb|2NMT|A Chain A, Myristoyl-Coa:protein N-Myristoyltransferase Bound To Myristoyl-Coa And Peptide Analogs Length = 422 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query96
1rxt_A496 Myristoyl-, glycylpeptide N-tetradecanoyltransfera 1e-38
3iu1_A383 Glycylpeptide N-tetradecanoyltransferase 1; N-myri 9e-38
2wuu_A421 N-myristoyltransferase; acyltransferase; HET: NHM; 1e-37
4a95_A384 Glycylpeptide N-tetradecanoyltransferase; malaria; 5e-37
1iyk_A392 Myristoyl-COA:protein N-myristoyltransferase; HET: 6e-24
1iic_A422 Peptide N-myristoyltransferase; HET: MYA; 2.20A {S 6e-18
1iic_A422 Peptide N-myristoyltransferase; HET: MYA; 2.20A {S 2e-11
>1rxt_A Myristoyl-, glycylpeptide N-tetradecanoyltransferase 1; alpha-beta structure, unique N-myristoyltransferase fold; 3.00A {Homo sapiens} SCOP: d.108.1.2 d.108.1.2 Length = 496 Back     alignment and structure
 Score =  132 bits (334), Expect = 1e-38
 Identities = 62/141 (43%), Positives = 78/141 (55%), Gaps = 45/141 (31%)

Query: 1   FFLRFDLAPIFSEEEFKHWFLPRDGIVYTFVVEN-DGEITEII----------------- 42
           +  +F L P+ S+EE +HWF P++ I+ TFVVEN +GE+T+ +                 
Sbjct: 356 YLKQFHLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYTLPSTIMNHPTHKS 415

Query: 43  ---------------------------LKEGFDVFNALDLMENKEFLGPLKFGIGDGNLQ 75
                                        +GFDVFNALDLMENK FL  LKFGIGDGNLQ
Sbjct: 416 LKAAYSFYNVHTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFLEKLKFGIGDGNLQ 475

Query: 76  YYLYNWKCPSIPPNKIGLVLQ 96
           YYLYNWKCPS+   K+G+VLQ
Sbjct: 476 YYLYNWKCPSMGAEKVGIVLQ 496


>3iu1_A Glycylpeptide N-tetradecanoyltransferase 1; N-myristoyltransferase, NMT1, acyltransferase, phosphoprotein, structural genomics; HET: MYA; 1.42A {Homo sapiens} PDB: 3iu2_A* 3iwe_A* 3jtk_A* Length = 383 Back     alignment and structure
>2wuu_A N-myristoyltransferase; acyltransferase; HET: NHM; 1.42A {Leishmania donovani} PDB: 3h5z_A* 4a2z_A* 4a30_A* 4a31_A* 4a32_A* 4a33_A* 2wsa_A* Length = 421 Back     alignment and structure
>4a95_A Glycylpeptide N-tetradecanoyltransferase; malaria; HET: 9MT NHM; 1.55A {Plasmodium vivax} Length = 384 Back     alignment and structure
>1iyk_A Myristoyl-COA:protein N-myristoyltransferase; HET: MYA MIM; 2.30A {Candida albicans} SCOP: d.108.1.2 d.108.1.2 PDB: 1iyl_A* 1nmt_A Length = 392 Back     alignment and structure
>1iic_A Peptide N-myristoyltransferase; HET: MYA; 2.20A {Saccharomyces cerevisiae} SCOP: d.108.1.2 d.108.1.2 PDB: 1iid_A* 2nmt_A* 2p6e_A* 2p6f_A* 2p6g_A* Length = 422 Back     alignment and structure
>1iic_A Peptide N-myristoyltransferase; HET: MYA; 2.20A {Saccharomyces cerevisiae} SCOP: d.108.1.2 d.108.1.2 PDB: 1iid_A* 2nmt_A* 2p6e_A* 2p6f_A* 2p6g_A* Length = 422 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query96
3iu1_A383 Glycylpeptide N-tetradecanoyltransferase 1; N-myri 100.0
2wuu_A421 N-myristoyltransferase; acyltransferase; HET: NHM; 100.0
1rxt_A496 Myristoyl-, glycylpeptide N-tetradecanoyltransfera 100.0
1iyk_A392 Myristoyl-COA:protein N-myristoyltransferase; HET: 100.0
4b14_A385 Glycylpeptide N-tetradecanoyltransferase; malaria, 100.0
1iic_A422 Peptide N-myristoyltransferase; HET: MYA; 2.20A {S 100.0
>3iu1_A Glycylpeptide N-tetradecanoyltransferase 1; N-myristoyltransferase, NMT1, acyltransferase, phosphoprotein, structural genomics; HET: MYA; 1.42A {Homo sapiens} PDB: 3iu2_A* 3iwe_A* 3jtk_A* Back     alignment and structure
Probab=100.00  E-value=8.4e-48  Score=309.55  Aligned_cols=96  Identities=66%  Similarity=1.229  Sum_probs=93.2

Q ss_pred             CcccccceeccChhhheeeeccCCCeEEEEEEecC-Cceeeee-------------------------------------
Q psy14938          1 FFLRFDLAPIFSEEEFKHWFLPRDGIVYTFVVEND-GEITEII-------------------------------------   42 (96)
Q Consensus         1 yl~~f~l~~~fs~eev~Hw~lp~~~Vi~tyVve~~-~~iTDf~-------------------------------------   42 (96)
                      ||+||+++|+||+|||+|||+|+++||||||||++ |+||||+                                     
T Consensus       243 yl~~f~l~~~ft~eev~Hw~lp~~~Vi~syVve~~~g~ITDf~SFY~Lpstvl~~~~~~~l~aAY~fY~~~t~~~l~~Lm  322 (383)
T 3iu1_A          243 YLKQFHLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYTLPSTIMNHPTHKSLKAAYSFYNVHTQTPLLDLM  322 (383)
T ss_dssp             HGGGSSEEEECCHHHHHHHHSCC-CCEEEEEEECTTSCEEEEEEEEECCEEETTCSSCCEECEEEECCCBCSSSCHHHHH
T ss_pred             HHHhCCCeeeCCHHHhhhhcccCCCeEEEEEEECCCCcEeeEEEEEEccceecCCCCcceeeeEEEEEEeecCCCHHHHH
Confidence            68999999999999999999999999999999987 9999999                                     


Q ss_pred             -------eccCCeEEEeeccccchhccccCcccccceeeeEEEeeccCCCCCCCceEEEcC
Q psy14938         43 -------LKEGFDVFNALDLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSIPPNKIGLVLQ   96 (96)
Q Consensus        43 -------k~~gfDVfN~Ld~m~N~~fl~~lkF~~GdG~L~YYLyNw~~~~i~~~~vglvl~   96 (96)
                             |+.|||||||||+|+|++||++||||+|||+|||||||||||+|+|++||+|||
T Consensus       323 ~DaLi~Ak~~gfDVFNaL~~m~N~~fL~~lKFg~GdG~L~YYLyNwr~~~~~~~~vglvl~  383 (383)
T 3iu1_A          323 SDALVLAKMKGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYLYNWKCPSMGAEKVGLVLQ  383 (383)
T ss_dssp             HHHHHHHHHTTCSEEEEESCTTGGGTTTTTTCEEEEEEEEEEEESCBCCCBCGGGBCCCCC
T ss_pred             HHHHHHHHHcCCeEEEcccccccHHHHHHcCCCCCCCceEEEEeeccCCCCChhHeeEEeC
Confidence                   899999999999999999999999999999999999999999999999999997



>2wuu_A N-myristoyltransferase; acyltransferase; HET: NHM; 1.42A {Leishmania donovani} PDB: 3h5z_A* 4a2z_A* 4a30_A* 4a31_A* 4a32_A* 4a33_A* 2wsa_A* Back     alignment and structure
>1rxt_A Myristoyl-, glycylpeptide N-tetradecanoyltransferase 1; alpha-beta structure, unique N-myristoyltransferase fold; 3.00A {Homo sapiens} SCOP: d.108.1.2 d.108.1.2 Back     alignment and structure
>1iyk_A Myristoyl-COA:protein N-myristoyltransferase; HET: MYA MIM; 2.30A {Candida albicans} SCOP: d.108.1.2 d.108.1.2 PDB: 1iyl_A* 1nmt_A Back     alignment and structure
>4b14_A Glycylpeptide N-tetradecanoyltransferase; malaria, drug design; HET: NHW 4XB; 1.50A {Plasmodium vivax} PDB: 4b11_A* 4b12_A* 4b13_A* 4b10_A* 4a95_A* Back     alignment and structure
>1iic_A Peptide N-myristoyltransferase; HET: MYA; 2.20A {Saccharomyces cerevisiae} SCOP: d.108.1.2 d.108.1.2 PDB: 1iid_A* 2nmt_A* 2p6e_A* 2p6f_A* 2p6g_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 96
d1rxta2201 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT 2e-42
d1iyka2227 d.108.1.2 (A:225-451) N-myristoyl transferase, NMT 2e-34
d1iica2237 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT 2e-23
d1iica2237 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT 2e-11
>d1rxta2 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT {Human (Homo sapiens) [TaxId: 9606]} Length = 201 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Acyl-CoA N-acyltransferases (Nat)
superfamily: Acyl-CoA N-acyltransferases (Nat)
family: N-myristoyl transferase, NMT
domain: N-myristoyl transferase, NMT
species: Human (Homo sapiens) [TaxId: 9606]
 Score =  134 bits (340), Expect = 2e-42
 Identities = 62/138 (44%), Positives = 77/138 (55%), Gaps = 45/138 (32%)

Query: 4   RFDLAPIFSEEEFKHWFLPRDGIVYTFVVEN-DGEITEII-------------------- 42
           +F L P+ S+EE +HWF P++ I+ TFVVEN +GE+T+ +                    
Sbjct: 64  QFHLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYTLPSTIMNHPTHKSLKA 123

Query: 43  ------------------------LKEGFDVFNALDLMENKEFLGPLKFGIGDGNLQYYL 78
                                     +GFDVFNALDLMENK FL  LKFGIGDGNLQYYL
Sbjct: 124 AYSFYNVHTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYL 183

Query: 79  YNWKCPSIPPNKIGLVLQ 96
           YNWKCPS+   K+G+VLQ
Sbjct: 184 YNWKCPSMGAEKVGIVLQ 201


>d1iyka2 d.108.1.2 (A:225-451) N-myristoyl transferase, NMT {Yeast (Candida albicans) [TaxId: 5476]} Length = 227 Back     information, alignment and structure
>d1iica2 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 237 Back     information, alignment and structure
>d1iica2 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 237 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query96
d1rxta2201 N-myristoyl transferase, NMT {Human (Homo sapiens) 100.0
d1iyka2227 N-myristoyl transferase, NMT {Yeast (Candida albic 100.0
d1iica2237 N-myristoyl transferase, NMT {Baker's yeast (Sacch 100.0
>d1rxta2 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Acyl-CoA N-acyltransferases (Nat)
superfamily: Acyl-CoA N-acyltransferases (Nat)
family: N-myristoyl transferase, NMT
domain: N-myristoyl transferase, NMT
species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00  E-value=5.6e-52  Score=309.09  Aligned_cols=96  Identities=65%  Similarity=1.225  Sum_probs=94.2

Q ss_pred             CcccccceeccChhhheeeeccCCCeEEEEEEecC-Cceeeee-------------------------------------
Q psy14938          1 FFLRFDLAPIFSEEEFKHWFLPRDGIVYTFVVEND-GEITEII-------------------------------------   42 (96)
Q Consensus         1 yl~~f~l~~~fs~eev~Hw~lp~~~Vi~tyVve~~-~~iTDf~-------------------------------------   42 (96)
                      |++||+++|+||+|||+|||+||++||||||||++ |+||||+                                     
T Consensus        61 yl~~f~l~~~f~~eev~Hwflp~~~Vi~syVve~~~g~itDf~SFY~lpstvi~~~~~~~l~aAY~fY~~~~~~~l~~Li  140 (201)
T d1rxta2          61 YLKQFHLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYTLPSTIMNHPTHKSLKAAYSFYNVHTQTPLLDLM  140 (201)
T ss_dssp             HSTTSSBCCCCCTTTTTTSSSCCSSSEEEEEECCSSSCCCCEEEEECCCBCCCSCSSCCCCCBCCCCCEECSSSCTTTHH
T ss_pred             HHhcCceEEecCHHHhheeeccCCCEEEEEEEECCCCcEeeEEEEEEcchhhhCCcccceeeeEEEEEEeecCCcHHHHH
Confidence            68999999999999999999999999999999987 9999999                                     


Q ss_pred             -------eccCCeEEEeeccccchhccccCcccccceeeeEEEeeccCCCCCCCceEEEcC
Q psy14938         43 -------LKEGFDVFNALDLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSIPPNKIGLVLQ   96 (96)
Q Consensus        43 -------k~~gfDVfN~Ld~m~N~~fl~~lkF~~GdG~L~YYLyNw~~~~i~~~~vglvl~   96 (96)
                             |+.|||||||||+|+|++||++||||+|||+|||||||||||+|+|++||+|||
T Consensus       141 ~Dali~Ak~~~fDVfNaL~i~dN~~fL~~lKFg~GdG~L~YYLyNw~~~~i~p~~iglvl~  201 (201)
T d1rxta2         141 SDALVLAKMKGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYLYNWKCPSMGAEKVGIVLQ  201 (201)
T ss_dssp             HHHHHHHHHTTCSBCCCCCCTTHHHHTTTSSCCCCSCCCEEEESSCCCCCCCTTTBCCCCC
T ss_pred             HHHHHHHHHcCCcEEEecchhcCHHHHHHCCCccCCCcEEEEEEeccCCCCCHHHceEEeC
Confidence                   899999999999999999999999999999999999999999999999999998



>d1iyka2 d.108.1.2 (A:225-451) N-myristoyl transferase, NMT {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d1iica2 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure