Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
ID Alignment Graph Length
Definition
E-value
Query 96
pfam02799 190
pfam02799, NMT_C, Myristoyl-CoA:protein N-myristoy
3e-46
COG5092 451
COG5092, NMT1, N-myristoyl transferase [Lipid meta
7e-16
>gnl|CDD|202401 pfam02799, NMT_C, Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain
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Score = 146 bits (370), Expect = 3e-46
Identities = 62/139 (44%), Positives = 77/139 (55%), Gaps = 47/139 (33%)
Query: 4 RFDLAPIFSEEEFKHWFLPRDGIVYTFVVEN-DGEITE---------------------- 40
RFDLAP+F++EE HWFLPR+ +VY++VVEN DG+IT+
Sbjct: 52 RFDLAPVFTKEEVAHWFLPRENVVYSYVVENEDGKITDFFSFYSLPSTVIGNPKHKTLKA 111
Query: 41 --------------------IIL--KEGFDVFNALDLMENKEFLGPLKFGIGDGNLQYYL 78
+IL GFDVFNALDLM+NK FL LKFG GDG L YYL
Sbjct: 112 AYSFYYAATSTRLKQLMNDALILAKNLGFDVFNALDLMDNKLFLEDLKFGPGDGQLNYYL 171
Query: 79 YNWKCPSI--PPNKIGLVL 95
YN++CP I + +GLVL
Sbjct: 172 YNYRCPPIMGGISGVGLVL 190
The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. Length = 190
>gnl|CDD|227423 COG5092, NMT1, N-myristoyl transferase [Lipid metabolism]
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Score = 70.8 bits (173), Expect = 7e-16
Identities = 28/44 (63%), Positives = 31/44 (70%)
Query: 44 KEGFDVFNALDLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSIP 87
EG DVFNAL +M+N FL LKFG GDG L YYLYN+K IP
Sbjct: 386 VEGCDVFNALTMMDNSLFLADLKFGCGDGFLNYYLYNYKSEEIP 429
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value
Query
96
d1rxta2 201
d.108.1.2 (A:219-455) N-myristoyl transferase, NMT
2e-42
d1iyka2 227
d.108.1.2 (A:225-451) N-myristoyl transferase, NMT
2e-34
d1iica2 237
d.108.1.2 (A:219-455) N-myristoyl transferase, NMT
2e-23
d1iica2 237
d.108.1.2 (A:219-455) N-myristoyl transferase, NMT
2e-11
>d1rxta2 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT {Human (Homo sapiens) [TaxId: 9606]} Length = 201
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class: Alpha and beta proteins (a+b)
fold: Acyl-CoA N-acyltransferases (Nat)
superfamily: Acyl-CoA N-acyltransferases (Nat)
family: N-myristoyl transferase, NMT
domain: N-myristoyl transferase, NMT
species: Human (Homo sapiens) [TaxId: 9606]
Score = 134 bits (340), Expect = 2e-42
Identities = 62/138 (44%), Positives = 77/138 (55%), Gaps = 45/138 (32%)
Query: 4 RFDLAPIFSEEEFKHWFLPRDGIVYTFVVEN-DGEITEII-------------------- 42
+F L P+ S+EE +HWF P++ I+ TFVVEN +GE+T+ +
Sbjct: 64 QFHLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYTLPSTIMNHPTHKSLKA 123
Query: 43 ------------------------LKEGFDVFNALDLMENKEFLGPLKFGIGDGNLQYYL 78
+GFDVFNALDLMENK FL LKFGIGDGNLQYYL
Sbjct: 124 AYSFYNVHTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYL 183
Query: 79 YNWKCPSIPPNKIGLVLQ 96
YNWKCPS+ K+G+VLQ
Sbjct: 184 YNWKCPSMGAEKVGIVLQ 201
>d1iyka2 d.108.1.2 (A:225-451) N-myristoyl transferase, NMT {Yeast (Candida albicans) [TaxId: 5476]} Length = 227
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class: Alpha and beta proteins (a+b)
fold: Acyl-CoA N-acyltransferases (Nat)
superfamily: Acyl-CoA N-acyltransferases (Nat)
family: N-myristoyl transferase, NMT
domain: N-myristoyl transferase, NMT
species: Yeast (Candida albicans) [TaxId: 5476]
Score = 115 bits (289), Expect = 2e-34
Identities = 46/163 (28%), Positives = 62/163 (38%), Gaps = 71/163 (43%)
Query: 4 RFDLAPIFSEEEFKHWFLPRD-----GIVYTFVVEN-DGEITE----------------- 40
RFD+ +F+EEEFKHW L D +V ++VVE+ +G IT+
Sbjct: 64 RFDIVQLFTEEEFKHWMLGHDENSDSNVVKSYVVEDENGIITDYFSYYLLPFTVLDNAQH 123
Query: 41 ---------------------------------IILK-EGFDVFNALDLMENKEFLGPLK 66
I K G DVFN L +N FL K
Sbjct: 124 DELGIAYLFYYASDSFEKPNYKKRLNELITDALITSKKFGVDVFNCLTCQDNTYFLKDCK 183
Query: 67 FGIGDGNLQYYLYNWKCPSIP--------------PNKIGLVL 95
FG GDG L YYL+N++ + + IG+VL
Sbjct: 184 FGSGDGFLNYYLFNYRTFPMDGGIDKKTKEVVEDQTSGIGVVL 226
>d1iica2 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 237
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Acyl-CoA N-acyltransferases (Nat)
superfamily: Acyl-CoA N-acyltransferases (Nat)
family: N-myristoyl transferase, NMT
domain: N-myristoyl transferase, NMT
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 87.6 bits (217), Expect = 2e-23
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 13/65 (20%)
Query: 44 KEGFDVFNALDLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSIP-------------PNK 90
DVFNAL +N FL LKFG GDG L +YL+N++ I +
Sbjct: 172 NANMDVFNALTSQDNTLFLDDLKFGPGDGFLNFYLFNYRAKPITGGLNPDNSNDIKRRSN 231
Query: 91 IGLVL 95
+G+V+
Sbjct: 232 VGVVM 236
>d1iica2 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 237
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Acyl-CoA N-acyltransferases (Nat)
superfamily: Acyl-CoA N-acyltransferases (Nat)
family: N-myristoyl transferase, NMT
domain: N-myristoyl transferase, NMT
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.7 bits (134), Expect = 2e-11
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 7/46 (15%)
Query: 4 RFDLAPIFSEEEFKHWFLPRDG------IVYTFVVEN-DGEITEII 42
RF+L IF++EEF+H F+ + +++++VVE DG+IT+
Sbjct: 64 RFELIQIFTKEEFEHNFIGEESLPLDKQVIFSYVVEQPDGKITDFF 109
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability
Query 96
d1rxta2 201
N-myristoyl transferase, NMT {Human (Homo sapiens)
100.0
d1iyka2 227
N-myristoyl transferase, NMT {Yeast (Candida albic
100.0
d1iica2 237
N-myristoyl transferase, NMT {Baker's yeast (Sacch
100.0
>d1rxta2 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT {Human (Homo sapiens) [TaxId: 9606]}
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class: Alpha and beta proteins (a+b)
fold: Acyl-CoA N-acyltransferases (Nat)
superfamily: Acyl-CoA N-acyltransferases (Nat)
family: N-myristoyl transferase, NMT
domain: N-myristoyl transferase, NMT
species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.6e-52 Score=309.09 Aligned_cols=96 Identities=65% Similarity=1.225 Sum_probs=94.2
Q ss_pred CcccccceeccChhhheeeeccCCCeEEEEEEecC-Cceeeee-------------------------------------
Q psy14938 1 FFLRFDLAPIFSEEEFKHWFLPRDGIVYTFVVEND-GEITEII------------------------------------- 42 (96)
Q Consensus 1 yl~~f~l~~~fs~eev~Hw~lp~~~Vi~tyVve~~-~~iTDf~------------------------------------- 42 (96)
|++||+++|+||+|||+|||+||++||||||||++ |+||||+
T Consensus 61 yl~~f~l~~~f~~eev~Hwflp~~~Vi~syVve~~~g~itDf~SFY~lpstvi~~~~~~~l~aAY~fY~~~~~~~l~~Li 140 (201)
T d1rxta2 61 YLKQFHLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYTLPSTIMNHPTHKSLKAAYSFYNVHTQTPLLDLM 140 (201)
T ss_dssp HSTTSSBCCCCCTTTTTTSSSCCSSSEEEEEECCSSSCCCCEEEEECCCBCCCSCSSCCCCCBCCCCCEECSSSCTTTHH
T ss_pred HHhcCceEEecCHHHhheeeccCCCEEEEEEEECCCCcEeeEEEEEEcchhhhCCcccceeeeEEEEEEeecCCcHHHHH
Confidence 68999999999999999999999999999999987 9999999
Q ss_pred -------eccCCeEEEeeccccchhccccCcccccceeeeEEEeeccCCCCCCCceEEEcC
Q psy14938 43 -------LKEGFDVFNALDLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSIPPNKIGLVLQ 96 (96)
Q Consensus 43 -------k~~gfDVfN~Ld~m~N~~fl~~lkF~~GdG~L~YYLyNw~~~~i~~~~vglvl~ 96 (96)
|+.|||||||||+|+|++||++||||+|||+|||||||||||+|+|++||+|||
T Consensus 141 ~Dali~Ak~~~fDVfNaL~i~dN~~fL~~lKFg~GdG~L~YYLyNw~~~~i~p~~iglvl~ 201 (201)
T d1rxta2 141 SDALVLAKMKGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYLYNWKCPSMGAEKVGIVLQ 201 (201)
T ss_dssp HHHHHHHHHTTCSBCCCCCCTTHHHHTTTSSCCCCSCCCEEEESSCCCCCCCTTTBCCCCC
T ss_pred HHHHHHHHHcCCcEEEecchhcCHHHHHHCCCccCCCcEEEEEEeccCCCCCHHHceEEeC
Confidence 899999999999999999999999999999999999999999999999999998
>d1iyka2 d.108.1.2 (A:225-451) N-myristoyl transferase, NMT {Yeast (Candida albicans) [TaxId: 5476]}
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class: Alpha and beta proteins (a+b)
fold: Acyl-CoA N-acyltransferases (Nat)
superfamily: Acyl-CoA N-acyltransferases (Nat)
family: N-myristoyl transferase, NMT
domain: N-myristoyl transferase, NMT
species: Yeast (Candida albicans) [TaxId: 5476]
Probab=100.00 E-value=2.5e-49 Score=299.15 Aligned_cols=95 Identities=47% Similarity=0.857 Sum_probs=91.5
Q ss_pred CcccccceeccChhhheeeeccCC-----CeEEEEEEecC-Cceeeee--------------------------------
Q psy14938 1 FFLRFDLAPIFSEEEFKHWFLPRD-----GIVYTFVVEND-GEITEII-------------------------------- 42 (96)
Q Consensus 1 yl~~f~l~~~fs~eev~Hw~lp~~-----~Vi~tyVve~~-~~iTDf~-------------------------------- 42 (96)
|++||+++|+||+|||+|||+||+ +||||||||++ |+||||+
T Consensus 61 yl~~f~l~~~F~~eev~Hwflp~~~~~~~~Vi~sYVve~~~g~ItDF~SFY~Lpstvi~~~~h~~l~aAY~fY~~~~~~~ 140 (227)
T d1iyka2 61 YQERFDIVQLFTEEEFKHWMLGHDENSDSNVVKSYVVEDENGIITDYFSYYLLPFTVLDNAQHDELGIAYLFYYASDSFE 140 (227)
T ss_dssp HHTTSSEEEECCHHHHHHHHHCSCSSSCCSSEEEEEEECTTSCEEEEEEEEECCEEESSCSSCSEECEEEEEEEEETTTT
T ss_pred HHHcCcceEecCHHHHHHhhcCccccCCCCeEEEEEEECCCCcEeEEEEEeeccHHhhCCCccceEEEEEEEEEEeeccc
Confidence 689999999999999999999996 89999999987 9999999
Q ss_pred -------------------eccCCeEEEeeccccchhccccCcccccceeeeEEEeeccCCCCC--------------CC
Q psy14938 43 -------------------LKEGFDVFNALDLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSIP--------------PN 89 (96)
Q Consensus 43 -------------------k~~gfDVfN~Ld~m~N~~fl~~lkF~~GdG~L~YYLyNw~~~~i~--------------~~ 89 (96)
|+.|||||||||+|+|++||++||||+|||+|||||||||||+|+ |+
T Consensus 141 ~~~~k~~l~~Li~Dali~Ak~~~fDVFNaL~~mdN~~fLe~lKFg~GdG~L~YYLyNwr~~~i~gg~~~~~~~~~~~~~s 220 (227)
T d1iyka2 141 KPNYKKRLNELITDALITSKKFGVDVFNCLTCQDNTYFLKDCKFGSGDGFLNYYLFNYRTFPMDGGIDKKTKEVVEDQTS 220 (227)
T ss_dssp STTHHHHHHHHHHHHHHHHGGGTCSEEEEESCTTGGGTTTTTTCEEEEEEEEEEEETCBCCCCCCSBCTTTCCBCTTCCC
T ss_pred chhhhhhHHHHHHHHHHHHHHcCCcEEEcccccccHHHHHHcCCccCCCcEEEEEEeccCCCccCccccccccccccCCC
Confidence 889999999999999999999999999999999999999999995 89
Q ss_pred ceEEEc
Q psy14938 90 KIGLVL 95 (96)
Q Consensus 90 ~vglvl 95 (96)
+||+||
T Consensus 221 ~vG~Vl 226 (227)
T d1iyka2 221 GIGVVL 226 (227)
T ss_dssp SEECCC
T ss_pred ceeEEe
Confidence 999997
>d1iica2 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Acyl-CoA N-acyltransferases (Nat)
superfamily: Acyl-CoA N-acyltransferases (Nat)
family: N-myristoyl transferase, NMT
domain: N-myristoyl transferase, NMT
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.6e-49 Score=297.69 Aligned_cols=95 Identities=41% Similarity=0.837 Sum_probs=90.9
Q ss_pred CcccccceeccChhhheeeeccCCC------eEEEEEEecC-Cceeeee-------------------------------
Q psy14938 1 FFLRFDLAPIFSEEEFKHWFLPRDG------IVYTFVVEND-GEITEII------------------------------- 42 (96)
Q Consensus 1 yl~~f~l~~~fs~eev~Hw~lp~~~------Vi~tyVve~~-~~iTDf~------------------------------- 42 (96)
||+||+++|+||+|||+|||+||++ ||||||||++ |+||||+
T Consensus 61 yl~~f~l~~~Ft~eev~Hwflp~~~~~~~~~VI~sYVve~~~g~ITDF~SFY~Lpstvi~~~kh~~l~aAY~fYy~~~~~ 140 (237)
T d1iica2 61 YQSRFELIQIFTKEEFEHNFIGEESLPLDKQVIFSYVVEQPDGKITDFFSFYSLPFTILNNTKYKDLGIGYLYYYATDAD 140 (237)
T ss_dssp HHTTSSEEECCCHHHHHHHHSCCTTCCGGGCCEEEEEEECTTSCEEEEEEEEECCEEECSCSSCSEECEEEEEEEEECTT
T ss_pred HHHhCcceEecCHHHhhheeccccCCCCCCcEEEEEEEECCCCcEeeEEEEEecchhhhCCCCcceEEEEEEEEEeeccc
Confidence 6899999999999999999999974 9999999997 9999999
Q ss_pred ------------------------------eccCCeEEEeeccccchhccccCcccccceeeeEEEeeccCCCCC-----
Q psy14938 43 ------------------------------LKEGFDVFNALDLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSIP----- 87 (96)
Q Consensus 43 ------------------------------k~~gfDVfN~Ld~m~N~~fl~~lkF~~GdG~L~YYLyNw~~~~i~----- 87 (96)
|+.|||||||||+|+|++||++||||+|||+|||||||||||+|+
T Consensus 141 ~~~~~~~~~~~~~a~k~~l~~Li~Dali~Ak~~~fDVFNaL~~mdN~~fLe~lKFg~GdG~L~YYLyNwr~~~i~gg~~~ 220 (237)
T d1iica2 141 FQFKDRFDPKATKALKTRLCELIYDACILAKNANMDVFNALTSQDNTLFLDDLKFGPGDGFLNFYLFNYRAKPITGGLNP 220 (237)
T ss_dssp TTSSCTTSHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEESCTTGGGTTTTTTCEEEEEEEEEEEETEECCCCCBSBCT
T ss_pred cccccccchhhhhhhcchHHHHHHHHHHHHHHcCCcEEEeccccccHHHHHHcCCccCCCcEEEEEEeccCCCccCCcCc
Confidence 779999999999999999999999999999999999999999995
Q ss_pred --------CCceEEEc
Q psy14938 88 --------PNKIGLVL 95 (96)
Q Consensus 88 --------~~~vglvl 95 (96)
|++||+||
T Consensus 221 ~~~~~~~~~s~vG~Vl 236 (237)
T d1iica2 221 DNSNDIKRRSNVGVVM 236 (237)
T ss_dssp TSSBCTTTCBCBCCCC
T ss_pred cccccccCccCeeEEe
Confidence 79999997