Psyllid ID: psy14943

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
MFPVVKVSIKGLEPDAMYTVLLEFLQIEQKSVAMSIEMIKSDSQQYEAYGNPQVILEDLDLWLKFQSHTNEMIVTKNGRRMFPVVKVSIKGLEPDAMYTVLLEFLQIEQKRWKYVNGEWVPAGKPEQPPMNAMYLHPESPNFGEHWMKDCVSFAKVKLTNHSNGSGQIMLNSLHKYEPRIHLVKVATEQQIIKTFPFPETQFIAVTAYQNEEFIAVTAYQNEEVTSLKIKFNPFAKAFLDAKEKTDNYYNQQTTNEWKYVNGEWVPAGKPEQPPMNAMYLHPESPNFGEHWMKDCVSFAKVKLTNHSNGSGQSGMGTQGPVTLEVRHT
ccccccccccccccccccccHHHHHHccccccccccccccccccccccccccEEEEccHHHHHHHHccccEEEEcccccccccccEEEEEcccccccEEEEEEEEEcccccEEEEcccEEEccccccccccccEEcccccccHHHHHcccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccEEEEEEEccEEEEEEcccccccHHcccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccEEccEEEcccccccccccccccccEEEccccc
cccccEEEEEccccccEEEEEEEEEcccccccHHccccccccccccccccccEEEEccHHHHHHHHHHccEEEcEcccEEcccccEEEEEccccccEEEEEEEEEEccccEEEEEccEEEEEcccccccccccEEcccccEEHHHHHHccEEccccEEEccccccccEEcccccEEEEEEEEEEEccccccEEEEEcHHHcEEEEcccccHHHHHHHHHHcHHHHHHHHHHcHHHHHHHHHHHHcccHHHHHcccEEEEEccEEEEEEEcccccccccEEcccccEEHHHHHcccEEcccccEEccccccccccccccccEEcccccc
MFPVVKVSIKGLEPDAMYTVLLEFLQIEQKSVAMSIEMIKSDsqqyeaygnpqvILEDLDLWLKFQSHTNEMIVtkngrrmfPVVKVSIKGLEPDAMYTVLLEFLQIEQKRWKyvngewvpagkpeqppmnamylhpespnfgehwMKDCVSFAKVKltnhsngsgqIMLNslhkyepriHLVKVATEQQiiktfpfpetqFIAVTAYQNEEFIAVTAYQNEEVTSLKIKFNPFAKAFLDAKektdnyynqqttnewkyvngewvpagkpeqppmnamylhpespnfgehwMKDCVSFAKVKltnhsngsgqsgmgtqgpvtlevrht
MFPVVKVsikglepdaMYTVLLEFLQIEQKSVAMSIEMIKSDSQQYEAYGNPQVILEDLDLWLKFQSHTNEmivtkngrrmfpVVKVSIKGLEPDAMYTVLLEFLQIEQKRWKYVNGEWVPAGKPEQPPMNAMYLHPESPNFGEHWMKDCVSFAKVKLTNHSNGSGQIMLNSLHKYEPRIHLVKVATEQQIIKTFPFPETQFIAVTAYQNEEFIAVTAYQNEEVTSLKIKFNPFAKAFLDAKEKTDNYYNQQTTNEWKYVNGEWVPAGKPEQPPMNAMYLHPESPNFGEHWMKDCVSFAKVKLTNhsngsgqsgmgtqgpvtlevrht
MFPVVKVSIKGLEPDAMYTVLLEFLQIEQKSVAMSIEMIKSDSQQYEAYGNPQVILEDLDLWLKFQSHTNEMIVTKNGRRMFPVVKVSIKGLEPDAMYTVLLEFLQIEQKRWKYVNGEWVPAGKPEQPPMNAMYLHPESPNFGEHWMKDCVSFAKVKLTNHSNGSGQIMLNSLHKYEPRIHLVKVATEQQIIKTFPFPETQFIAVTAYQNEEFIAVTAYQNEEVTSLKIKFNPFAKAFLDAKEKTDNYYNQQTTNEWKYVNGEWVPAGKPEQPPMNAMYLHPESPNFGEHWMKDCVSFAKVKLTNHSNGSGQSGMGTQGPVTLEVRHT
***VVKVSIKGLEPDAMYTVLLEFLQIEQKSVAMSIEMIKSDSQQYEAYGNPQVILEDLDLWLKFQSHTNEMIVTKNGRRMFPVVKVSIKGLEPDAMYTVLLEFLQIEQKRWKYVNGEWVPA******************NFGEHWMKDCVSFAKVKLTNHSNGSGQIMLNSLHKYEPRIHLVKVATEQQIIKTFPFPETQFIAVTAYQNEEFIAVTAYQNEEVTSLKIKFNPFAKAFLDAKEKTDNYYNQQTTNEWKYVNGEWVP*******************NFGEHWMKDCVSFAKVKL*************************
MF****************************************************ILEDLDLWLKFQSHTNEMIVTKNGRRMFPVVKVSIKGLEPDAMYTVLLEFLQIEQKRWKYVNGEWVPAGKPEQPPMNAMYLHPESPNFGEHWMKDCVSFAKVKLTNHSNGSGQIMLNSLHKYEPRIHLVKVA**QQIIKTFPFPETQFIAVTAYQNEEFIAVTAYQNEEVTSL*I***P**************YYNQQTTNEWKYVNG*************************GEHWMKDCVSFAKVKLTNH*********GTQGPVTLEVR**
MFPVVKVSIKGLEPDAMYTVLLEFLQIEQKSVAMSIEMIKSDSQQYEAYGNPQVILEDLDLWLKFQSHTNEMIVTKNGRRMFPVVKVSIKGLEPDAMYTVLLEFLQIEQKRWKYVNGEWVPAGKPEQPPMNAMYLHPESPNFGEHWMKDCVSFAKVKLTNHSNGSGQIMLNSLHKYEPRIHLVKVATEQQIIKTFPFPETQFIAVTAYQNEEFIAVTAYQNEEVTSLKIKFNPFAKAFLDAKEKTDNYYNQQTTNEWKYVNGEWVPAGKPEQPPMNAMYLHPESPNFGEHWMKDCVSFAKVKLTNHSNGSGQSGMGTQGPVTLEVRHT
MFPVVKVSIKGLEPDAMYTVLLEFLQI*******S*************YGNPQVILEDLDLWLKFQSHTNEMIVTKNGRRMFPVVKVSIKGLEPDAMYTVLLEFLQIEQKRWKYVNGEWVPAGKPEQPPMNAMYLHPESPNFGEHWMKDCVSFAKVKLTNHSNGSGQIMLNSLHKYEPRIHLVKVATEQQIIKTFPFPETQFIAVTAYQNEEFIAVTAYQNEEVTSLKIKFNPFAKAFLDAKEKTDNYYNQQTTNEWKYVNGEWVPAGKPEQPPMNAMYLHPESPNFGEHWMKDCVSFAKVKLTNHS**SGQSGMGTQ**********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFPVVKVSIKGLEPDAMYTVLLEFLQIEQKSVAMSIEMIKSDSQQYEAYGNPQVILEDLDLWLKFQSHTNEMIVTKNGRRMFPVVKVSIKGLEPDAMYTVLLEFLQIEQKRWKYVNGEWVPAGKPEQPPMNAMYLHPESPNFGEHWMKDCVSFAKVKLTNHSNGSGQIMLNSLHKYEPRIHLVKVATEQQIIKTFPFPETQFIAVTAYQNEEFIAVTAYQNEEVTSLKIKFNPFAKAFLDAKEKTDNYYNQQTTNEWKYVNGEWVPAGKPEQPPMNAMYLHPESPNFGEHWMKDCVSFAKVKLTNHSNGSGQSGMGTQGPVTLEVRHT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query328 2.2.26 [Sep-21-2011]
P55965 697 T-related protein OS=Dros yes N/A 0.597 0.281 0.690 6e-83
P24781 432 Brachyury protein OS=Xeno N/A N/A 0.609 0.462 0.615 8e-74
Q9U903 453 Brachyury protein homolog N/A N/A 0.631 0.456 0.573 2e-73
Q9GL27 435 Brachyury protein OS=Cani yes N/A 0.612 0.462 0.603 3e-73
P79777 433 Brachyury protein OS=Gall yes N/A 0.612 0.464 0.603 5e-73
Q99ME7 446 T-box transcription facto yes N/A 0.625 0.459 0.574 2e-72
P79778397 T-box-containing protein yes N/A 0.618 0.511 0.584 3e-72
P20293 436 Brachyury protein OS=Mus no N/A 0.634 0.477 0.589 4e-72
O60806 448 T-box transcription facto yes N/A 0.682 0.5 0.536 5e-72
O15178 435 Brachyury protein OS=Homo no N/A 0.612 0.462 0.594 5e-72
>sp|P55965|BYN_DROME T-related protein OS=Drosophila melanogaster GN=byn PE=2 SV=2 Back     alignment and function desciption
 Score =  307 bits (787), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 143/207 (69%), Positives = 167/207 (80%), Gaps = 11/207 (5%)

Query: 51  NPQVILEDLDLWLKFQSHTNEMIVTKNGRRMFPVVKVSIKGLEPDAMYTVLLEFLQIEQK 110
           N ++ L+D +LWL+FQ+ TNEMIVTKNGRRMFPVVK+S  GL+P AMYTVLLEF+QI+  
Sbjct: 86  NLRISLDDRELWLRFQNLTNEMIVTKNGRRMFPVVKISASGLDPAAMYTVLLEFVQIDSH 145

Query: 111 RWKYVNGEWVPAGKPEQPPMNAMYLHPESPNFGEHWMKDCVSFAKVKLTNHSNGSGQIML 170
           RWKYVNGEWVP GK E PP N +Y+HPESPNFG HWMK+ +SFAKVKLTN +NG+GQIML
Sbjct: 146 RWKYVNGEWVPGGKAEVPPSNPIYVHPESPNFGAHWMKEPISFAKVKLTNKTNGNGQIML 205

Query: 171 NSLHKYEPRIHLVKVATEQQIIKTFPFPETQFIAVTAYQNEEFIAVTAYQNEEVTSLKIK 230
           NSLHKYEPR+HLV+V +EQ+ + T+PFPETQFIA           VTAYQNEEVTSLKIK
Sbjct: 206 NSLHKYEPRVHLVRVGSEQRHVVTYPFPETQFIA-----------VTAYQNEEVTSLKIK 254

Query: 231 FNPFAKAFLDAKEKTDNYYNQQTTNEW 257
           +NPFAKAFLDAKE+ D  Y   T   W
Sbjct: 255 YNPFAKAFLDAKERPDTLYPHDTHYGW 281
Required for the specification of the hindgut and anal pads.
Drosophila melanogaster (taxid: 7227)
>sp|P24781|BRAC_XENLA Brachyury protein OS=Xenopus laevis GN=t PE=1 SV=1 Back     alignment and function description
>sp|Q9U903|BRA_ASTPE Brachyury protein homolog OS=Asterina pectinifera GN=Bra PE=2 SV=1 Back     alignment and function description
>sp|Q9GL27|BRAC_CANFA Brachyury protein OS=Canis familiaris GN=T PE=2 SV=1 Back     alignment and function description
>sp|P79777|BRAC_CHICK Brachyury protein OS=Gallus gallus GN=T PE=2 SV=1 Back     alignment and function description
>sp|Q99ME7|TBX19_MOUSE T-box transcription factor TBX19 OS=Mus musculus GN=Tbx19 PE=2 SV=1 Back     alignment and function description
>sp|P79778|TBXT_CHICK T-box-containing protein TBXT OS=Gallus gallus GN=TBXT PE=2 SV=1 Back     alignment and function description
>sp|P20293|BRAC_MOUSE Brachyury protein OS=Mus musculus GN=T PE=1 SV=1 Back     alignment and function description
>sp|O60806|TBX19_HUMAN T-box transcription factor TBX19 OS=Homo sapiens GN=TBX19 PE=1 SV=3 Back     alignment and function description
>sp|O15178|BRAC_HUMAN Brachyury protein OS=Homo sapiens GN=T PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query328
195129081 707 GI11508 [Drosophila mojavensis] gi|19392 0.597 0.277 0.690 3e-81
194869492 703 GG15542 [Drosophila erecta] gi|190654245 0.597 0.278 0.690 3e-81
442631809 697 brachyenteron, isoform B [Drosophila mel 0.597 0.281 0.690 3e-81
195441076 731 GK25266 [Drosophila willistoni] gi|19416 0.597 0.268 0.690 4e-81
198464581 742 GA20217 [Drosophila pseudoobscura pseudo 0.597 0.264 0.690 5e-81
195378282 683 GJ13700 [Drosophila virilis] gi|19415507 0.597 0.286 0.690 5e-81
195160259 774 GL25108 [Drosophila persimilis] gi|19411 0.597 0.253 0.690 6e-81
195589660 740 GD14339 [Drosophila simulans] gi|1941965 0.597 0.264 0.690 7e-81
6013472 697 T-related protein [Drosophila sp.] 0.597 0.281 0.690 7e-81
195493663 694 GE21864 [Drosophila yakuba] gi|194180613 0.597 0.282 0.690 7e-81
>gi|195129081|ref|XP_002008987.1| GI11508 [Drosophila mojavensis] gi|193920596|gb|EDW19463.1| GI11508 [Drosophila mojavensis] Back     alignment and taxonomy information
 Score =  307 bits (787), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 143/207 (69%), Positives = 167/207 (80%), Gaps = 11/207 (5%)

Query: 51  NPQVILEDLDLWLKFQSHTNEMIVTKNGRRMFPVVKVSIKGLEPDAMYTVLLEFLQIEQK 110
           N +V L+D +LWL+FQ+ TNEMIVTKNGRRMFPVVK+S  GL+P AMYTVLLEF+Q++  
Sbjct: 101 NLRVSLDDRELWLRFQNLTNEMIVTKNGRRMFPVVKISASGLDPAAMYTVLLEFVQVDTH 160

Query: 111 RWKYVNGEWVPAGKPEQPPMNAMYLHPESPNFGEHWMKDCVSFAKVKLTNHSNGSGQIML 170
           RWKYVNGEWVP GK E PP N +Y+HPESPNFG HWMK+ +SFAKVKLTN +NG+GQIML
Sbjct: 161 RWKYVNGEWVPGGKAEVPPSNPIYVHPESPNFGAHWMKEPISFAKVKLTNKTNGNGQIML 220

Query: 171 NSLHKYEPRIHLVKVATEQQIIKTFPFPETQFIAVTAYQNEEFIAVTAYQNEEVTSLKIK 230
           NSLHKYEPR+HLV+V +EQ+ + T+PFPETQFIA           VTAYQNEEVTSLKIK
Sbjct: 221 NSLHKYEPRVHLVRVGSEQRHVVTYPFPETQFIA-----------VTAYQNEEVTSLKIK 269

Query: 231 FNPFAKAFLDAKEKTDNYYNQQTTNEW 257
           +NPFAKAFLDAKE+ D  Y   T   W
Sbjct: 270 YNPFAKAFLDAKERPDTLYPHDTHYGW 296

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|194869492|ref|XP_001972462.1| GG15542 [Drosophila erecta] gi|190654245|gb|EDV51488.1| GG15542 [Drosophila erecta] Back     alignment and taxonomy information
>gi|442631809|ref|NP_524031.2| brachyenteron, isoform B [Drosophila melanogaster] gi|17372819|sp|P55965.2|BYN_DROME RecName: Full=T-related protein; Short=Trp; AltName: Full=Protein brachyenteron gi|440215657|gb|AAF49989.2| brachyenteron, isoform B [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|195441076|ref|XP_002068355.1| GK25266 [Drosophila willistoni] gi|194164440|gb|EDW79341.1| GK25266 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|198464581|ref|XP_001353278.2| GA20217 [Drosophila pseudoobscura pseudoobscura] gi|198149783|gb|EAL30781.2| GA20217 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|195378282|ref|XP_002047913.1| GJ13700 [Drosophila virilis] gi|194155071|gb|EDW70255.1| GJ13700 [Drosophila virilis] Back     alignment and taxonomy information
>gi|195160259|ref|XP_002020993.1| GL25108 [Drosophila persimilis] gi|194118106|gb|EDW40149.1| GL25108 [Drosophila persimilis] Back     alignment and taxonomy information
>gi|195589660|ref|XP_002084568.1| GD14339 [Drosophila simulans] gi|194196577|gb|EDX10153.1| GD14339 [Drosophila simulans] Back     alignment and taxonomy information
>gi|6013472|gb|AAB32396.2| T-related protein [Drosophila sp.] Back     alignment and taxonomy information
>gi|195493663|ref|XP_002094512.1| GE21864 [Drosophila yakuba] gi|194180613|gb|EDW94224.1| GE21864 [Drosophila yakuba] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query328
FB|FBgn0011723 697 byn "brachyenteron" [Drosophil 0.597 0.281 0.690 2.7e-75
UNIPROTKB|P24781 432 t "Brachyury protein" [Xenopus 0.609 0.462 0.615 2.4e-67
ZFIN|ZDB-GENE-081028-48 424 ntlb "no tail b" [Danio rerio 0.560 0.433 0.656 2.4e-67
UNIPROTKB|F1NZI2 433 T "Brachyury protein" [Gallus 0.701 0.531 0.557 4e-67
UNIPROTKB|P79777 433 T "Brachyury protein" [Gallus 0.701 0.531 0.553 8.2e-67
UNIPROTKB|F1NR88397 TBX19 "Uncharacterized protein 0.823 0.680 0.480 1.1e-66
UNIPROTKB|P79778397 TBXT "T-box-containing protein 0.823 0.680 0.480 1.1e-66
MGI|MGI:1891158 446 Tbx19 "T-box 19" [Mus musculus 0.792 0.582 0.492 1.1e-66
UNIPROTKB|Q0V8E2 422 TBX19 "Uncharacterized protein 0.792 0.616 0.492 1.7e-66
RGD|1310145 446 Tbx19 "T-box 19" [Rattus norve 0.792 0.582 0.489 2.2e-66
FB|FBgn0011723 byn "brachyenteron" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 759 (272.2 bits), Expect = 2.7e-75, P = 2.7e-75
 Identities = 143/207 (69%), Positives = 167/207 (80%)

Query:    51 NPQVILEDLDLWLKFQSHTNEMIVTKNGRRMFPVVKVSIKGLEPDAMYTVLLEFLQIEQK 110
             N ++ L+D +LWL+FQ+ TNEMIVTKNGRRMFPVVK+S  GL+P AMYTVLLEF+QI+  
Sbjct:    86 NLRISLDDRELWLRFQNLTNEMIVTKNGRRMFPVVKISASGLDPAAMYTVLLEFVQIDSH 145

Query:   111 RWKYVNGEWVPAGKPEQPPMNAMYLHPESPNFGEHWMKDCVSFAKVKLTNHSNGSGQIML 170
             RWKYVNGEWVP GK E PP N +Y+HPESPNFG HWMK+ +SFAKVKLTN +NG+GQIML
Sbjct:   146 RWKYVNGEWVPGGKAEVPPSNPIYVHPESPNFGAHWMKEPISFAKVKLTNKTNGNGQIML 205

Query:   171 NSLHKYEPRIHLVKVATEQQIIKTFPFPETQFIAVTAYQNEEFIAVTAYQNEEVTSLKIK 230
             NSLHKYEPR+HLV+V +EQ+ + T+PFPETQFIAVTAYQNEE           VTSLKIK
Sbjct:   206 NSLHKYEPRVHLVRVGSEQRHVVTYPFPETQFIAVTAYQNEE-----------VTSLKIK 254

Query:   231 FNPFAKAFLDAKEKTDNYYNQQTTNEW 257
             +NPFAKAFLDAKE+ D  Y   T   W
Sbjct:   255 YNPFAKAFLDAKERPDTLYPHDTHYGW 281
GO:0001700 "embryonic development via the syncytial blastoderm" evidence=NAS
GO:0005634 "nucleus" evidence=ISS;NAS;IDA
GO:0003677 "DNA binding" evidence=ISS
GO:0007442 "hindgut morphogenesis" evidence=IEP;NAS;IMP;TAS
GO:0007494 "midgut development" evidence=IMP
GO:0007443 "Malpighian tubule morphogenesis" evidence=IMP
GO:0007509 "mesoderm migration involved in gastrulation" evidence=TAS
GO:0007280 "pole cell migration" evidence=TAS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS
GO:0001709 "cell fate determination" evidence=TAS
GO:0042803 "protein homodimerization activity" evidence=IPI
GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA
GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IDA
UNIPROTKB|P24781 t "Brachyury protein" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-081028-48 ntlb "no tail b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NZI2 T "Brachyury protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P79777 T "Brachyury protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NR88 TBX19 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P79778 TBXT "T-box-containing protein TBXT" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1891158 Tbx19 "T-box 19" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q0V8E2 TBX19 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1310145 Tbx19 "T-box 19" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O60806TBX19_HUMANNo assigned EC number0.53680.68290.5yesN/A
Q95PX3TBX7_CAEELNo assigned EC number0.36490.750.7522yesN/A
Q9GL27BRAC_CANFANo assigned EC number0.60360.61280.4620yesN/A
Q17134BRAC1_BRAFLNo assigned EC number0.51870.74690.5468yesN/A
P55965BYN_DROMENo assigned EC number0.69080.59750.2812yesN/A
P79778TBXT_CHICKNo assigned EC number0.58440.61890.5113yesN/A
Q99ME7TBX19_MOUSENo assigned EC number0.57460.6250.4596yesN/A
P79777BRAC_CHICKNo assigned EC number0.60360.61280.4642yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query328
pfam00907182 pfam00907, T-box, T-box 1e-100
cd00182188 cd00182, TBOX, T-box DNA binding domain of the T-b 2e-97
smart00425190 smart00425, TBOX, Domain first found in the mice T 9e-88
pfam00907182 pfam00907, T-box, T-box 5e-23
cd00182188 cd00182, TBOX, T-box DNA binding domain of the T-b 6e-22
smart00425190 smart00425, TBOX, Domain first found in the mice T 5e-19
cd00182188 cd00182, TBOX, T-box DNA binding domain of the T-b 4e-05
pfam00907182 pfam00907, T-box, T-box 7e-05
smart00425190 smart00425, TBOX, Domain first found in the mice T 0.001
>gnl|CDD|216184 pfam00907, T-box, T-box Back     alignment and domain information 
 Score =  292 bits (749), Expect = e-100
 Identities = 108/193 (55%), Positives = 139/193 (72%), Gaps = 15/193 (7%)

Query: 53  QVILEDLDLWLKFQSHTNEMIVTKNGRRMFPVVKVSIKGLEPDAMYTVLLEFLQIEQKRW 112
            V LED +LW KF     EMI+TK+GRRMFP +KVS+ GL+P+A+Y+VLL+F+ ++  R+
Sbjct: 1   TVSLEDRELWDKFHELGTEMIITKSGRRMFPTLKVSVSGLDPNALYSVLLDFVPVDDHRY 60

Query: 113 KYVNGEWVPAGKPEQPPMNAMYLHPESPNFGEHWMKDCVSFAKVKLTNH-SNGSGQIMLN 171
           K+ NGEWV AGK E  P   +Y+HP+SP  G HWMK  VSF KVKLTN+  +G+G I+LN
Sbjct: 61  KFHNGEWVVAGKAEPHPPPRVYIHPDSPATGAHWMKQPVSFDKVKLTNNKLDGNGHIILN 120

Query: 172 SLHKYEPRIHLVKVATE---QQIIKTFPFPETQFIAVTAYQNEEFIAVTAYQNEEVTSLK 228
           S+HKY+PR+H+V+V  E   Q+ ++TF FPETQ           FIAVTAYQNEE+T LK
Sbjct: 121 SMHKYQPRLHIVRVDDESPSQRTVRTFSFPETQ-----------FIAVTAYQNEEITKLK 169

Query: 229 IKFNPFAKAFLDA 241
           I  NPFAK F DA
Sbjct: 170 IDNNPFAKGFRDA 182

The T-box encodes a 180 amino acid domain that binds to DNA. Genes encoding T-box proteins are found in a wide range of animals, but not in other kingdoms such as plants. Family members are all thought to bind to the DNA consensus sequence TCACACCT. they are found exclusively in the nucleus, and perform DNA-binding and transcriptional activation/repression roles. They are generally required for development of the specific tissues they are expressed in, and mutations in T-box genes are implicated in human conditions such as DiGeorge syndrome and X-linked cleft palate, which feature malformations. Length = 182
>gnl|CDD|238106 cd00182, TBOX, T-box DNA binding domain of the T-box family of transcriptional regulators Back     alignment and domain information
>gnl|CDD|214656 smart00425, TBOX, Domain first found in the mice T locus (Brachyury) protein Back     alignment and domain information
>gnl|CDD|216184 pfam00907, T-box, T-box Back     alignment and domain information
>gnl|CDD|238106 cd00182, TBOX, T-box DNA binding domain of the T-box family of transcriptional regulators Back     alignment and domain information
>gnl|CDD|214656 smart00425, TBOX, Domain first found in the mice T locus (Brachyury) protein Back     alignment and domain information
>gnl|CDD|238106 cd00182, TBOX, T-box DNA binding domain of the T-box family of transcriptional regulators Back     alignment and domain information
>gnl|CDD|216184 pfam00907, T-box, T-box Back     alignment and domain information
>gnl|CDD|214656 smart00425, TBOX, Domain first found in the mice T locus (Brachyury) protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 328
cd00182188 TBOX T-box DNA binding domain of the T-box family 100.0
smart00425190 TBOX Domain first found in the mice T locus (Brach 100.0
KOG3586|consensus437 100.0
PF00907184 T-box: T-box; InterPro: IPR001699 Transcription fa 100.0
KOG3585|consensus328 100.0
KOG3586|consensus 437 99.89
cd00182188 TBOX T-box DNA binding domain of the T-box family 99.8
smart00425190 TBOX Domain first found in the mice T locus (Brach 99.78
KOG3585|consensus 328 99.72
PF00907184 T-box: T-box; InterPro: IPR001699 Transcription fa 99.45
>cd00182 TBOX T-box DNA binding domain of the T-box family of transcriptional regulators Back     alignment and domain information 
Probab=100.00  E-value=8.5e-73  Score=504.25  Aligned_cols=181  Identities=52%  Similarity=0.968  Sum_probs=173.8

Q ss_pred             CCEEEecCchhHhhhcCCCCeeEEEeCCCcCCCeeEEEeeCCCCCCceeEEEEEEEccCcceEEeCCeEEECCCCCCCCC
Q psy14943         51 NPQVILEDLDLWLKFQSHTNEMIVTKNGRRMFPVVKVSIKGLEPDAMYTVLLEFLQIEQKRWKYVNGEWVPAGKPEQPPM  130 (328)
Q Consensus        51 ~I~V~L~n~~lW~~F~~~~~EMIVtk~GRrmFP~l~~~vsGLdP~~~Y~v~l~~~~~D~~ryk~~~~~W~~~~~~~~~~~  130 (328)
                      +|+|+|+|++||++||+++|||||||+||||||.|+|+|+||||+++|.|.|+|+++|++||||.+|+|+++|++|+..+
T Consensus         1 ~i~v~L~~~~lW~~f~~~~tEMIITk~GRrmFP~l~~~vsGLdp~~~Y~v~l~~~~~D~~Rykf~~~~W~~~g~~e~~~~   80 (188)
T cd00182           1 GIKVSLENRELWKKFHELGTEMIITKSGRRMFPTLKVKVSGLDPNALYSVLMDLVPVDDHRYKFSGGKWVVAGKAEPHLP   80 (188)
T ss_pred             CcEEEEcCHHHHHhhcccCcEEEEecCCcccccceEEEEeCCCcccceEEEEEEEEcCCcEEEecCCcEeEcCCCCCCCC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEcCCCcchhhhhhcCeeeeeeEEeeeCC-CCCCceEeccccccccEEEEEEeCCcc----ceEEEeecCcceEEEe
Q psy14943        131 NAMYLHPESPNFGEHWMKDCVSFAKVKLTNHS-NGSGQIMLNSLHKYEPRIHLVKVATEQ----QIIKTFPFPETQFIAV  205 (328)
Q Consensus       131 ~~~~~Hp~~~~~G~~WM~~~vsF~klkiTN~~-~~~~~I~L~s~hKY~PvL~I~~~~~~~----~~~~~f~fpeTqFIaV  205 (328)
                      .++|+|||||++|++||+++|+|+++||||+. +..++|.|+|||||+|||||+++++..    ..+.+|+||||+||||
T Consensus        81 ~~~~~HPdsp~tG~~wM~~~isF~kvKlTN~~~~~~~~i~L~SmhKY~Prl~I~~~~~~~~~~~~~~~~f~F~eT~FiAV  160 (188)
T cd00182          81 PRVYVHPDSPATGAHWMKQPVSFDKLKLTNNTLDNNGHIILNSMHKYQPRLHIVEVDDSSPFSWRLVQTFSFPETEFIAV  160 (188)
T ss_pred             CceEECCCCCcCHHHHhhCccccchhhcccCCCCCCCEEEEeccceEEeEEEEEEcCCCccccccccEEEECCCeEEEEE
Confidence            99999999999999999999999999999997 456799999999999999999997753    4689999999999999


Q ss_pred             cccccceeeeeecccCccccccccccCCcchhhcccc
Q psy14943        206 TAYQNEEFIAVTAYQNEEVTSLKIKFNPFAKAFLDAK  242 (328)
Q Consensus       206 T~~~~~~fiav~~YqN~~I~~LKi~~NpfAkg~~~~~  242 (328)
                      |+           |||++|++|||++|||||||||..
T Consensus       161 Ta-----------YqN~~It~lKi~~NpfAkgfr~~~  186 (188)
T cd00182         161 TA-----------YQNQEITQLKIDNNPFAKGFRDNG  186 (188)
T ss_pred             Ee-----------ecCHhHhhhhhcCCcccccccccC
Confidence            99           999999999999999999999964

The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA binding domain of murine Brachyury (T) gene product, the defining feature of the family. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development and conserved expression patterns, most of the known genes in all species being expressed in mesoderm or mesoderm precursors.
>smart00425 TBOX Domain first found in the mice T locus (Brachyury) protein Back     alignment and domain information
>KOG3586|consensus Back     alignment and domain information
>PF00907 T-box: T-box; InterPro: IPR001699 Transcription factors of the T-box family are required both for early cell-fate decisions, such as those necessary for formation of the basic vertebrate body plan, and for differentiation and organogenesis [] Back     alignment and domain information
>KOG3585|consensus Back     alignment and domain information
>KOG3586|consensus Back     alignment and domain information
>cd00182 TBOX T-box DNA binding domain of the T-box family of transcriptional regulators Back     alignment and domain information
>smart00425 TBOX Domain first found in the mice T locus (Brachyury) protein Back     alignment and domain information
>KOG3585|consensus Back     alignment and domain information
>PF00907 T-box: T-box; InterPro: IPR001699 Transcription factors of the T-box family are required both for early cell-fate decisions, such as those necessary for formation of the basic vertebrate body plan, and for differentiation and organogenesis [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query328
1xbr_A184 T Domain From Xenopus Laevis Bound To Dna Length = 5e-73
1xbr_A184 T Domain From Xenopus Laevis Bound To Dna Length = 1e-19
1h6f_A193 Human Tbx3, A Transcription Factor Responsible For 1e-41
1h6f_A193 Human Tbx3, A Transcription Factor Responsible For 2e-07
2x6u_A203 Crystal Structure Of Human Tbx5 In The Dna-Free For 3e-41
2x6u_A203 Crystal Structure Of Human Tbx5 In The Dna-Free For 2e-07
4a04_A203 Structure Of The Dna-Bound T-Box Domain Of Human Tb 7e-38
4a04_A203 Structure Of The Dna-Bound T-Box Domain Of Human Tb 3e-05
>pdb|1XBR|A Chain A, T Domain From Xenopus Laevis Bound To Dna Length = 184 Back     alignment and structure 
Iteration: 1

 Score =  271 bits (692), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 129/192 (67%), Positives = 153/192 (79%), Gaps = 11/192 (5%)
Query: 53  QVILEDLDLWLKFQSHTNEMIVTKNGRRMFPVVKVSIKGLEPDAMYTVLLEFLQIEQKRW 112
           +V LE+ DLW +F+  TNEMIVTKNGRRMFPV+KVS+ GL+P+AMYTVLL+F+  +  RW
Sbjct: 3   KVSLEERDLWTRFKELTNEMIVTKNGRRMFPVLKVSMSGLDPNAMYTVLLDFVAADNHRW 62
Query: 113 KYVNGEWVPAGKPEQPPMNAMYLHPESPNFGEHWMKDCVSFAKVKLTNHSNGSGQIMLNS 172
           KYVNGEWVP GKPE    + +Y+HP+SPNFG HWMKD VSF+KVKLTN  NG GQIMLNS
Sbjct: 63  KYVNGEWVPGGKPEPQAPSCVYIHPDSPNFGAHWMKDPVSFSKVKLTNKMNGGGQIMLNS 122
Query: 173 LHKYEPRIHLVKVATEQQIIKTFPFPETQFIAVTAYQNEEFIAVTAYQNEEVTSLKIKFN 232
           LHKYEPRIH+V+V   Q++I +  FPETQFIA           VTAYQNEE+T+LKIK N
Sbjct: 123 LHKYEPRIHIVRVGGTQRMITSHSFPETQFIA-----------VTAYQNEEITALKIKHN 171
Query: 233 PFAKAFLDAKEK 244
           PFAKAFLDAKE+
Sbjct: 172 PFAKAFLDAKER 183
>pdb|1XBR|A Chain A, T Domain From Xenopus Laevis Bound To Dna Length = 184 Back     alignment and structure
>pdb|1H6F|A Chain A, Human Tbx3, A Transcription Factor Responsible For Ulnar- Mammary Syndrome, Bound To A Palindromic Dna Site Length = 193 Back     alignment and structure
>pdb|1H6F|A Chain A, Human Tbx3, A Transcription Factor Responsible For Ulnar- Mammary Syndrome, Bound To A Palindromic Dna Site Length = 193 Back     alignment and structure
>pdb|2X6U|A Chain A, Crystal Structure Of Human Tbx5 In The Dna-Free Form Length = 203 Back     alignment and structure
>pdb|2X6U|A Chain A, Crystal Structure Of Human Tbx5 In The Dna-Free Form Length = 203 Back     alignment and structure
>pdb|4A04|A Chain A, Structure Of The Dna-Bound T-Box Domain Of Human Tbx1, A Transcription Factor Associated With The Digeorge Syndrome Length = 203 Back     alignment and structure
>pdb|4A04|A Chain A, Structure Of The Dna-Bound T-Box Domain Of Human Tbx1, A Transcription Factor Associated With The Digeorge Syndrome Length = 203 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query328
1xbr_A184 Protein (T protein); complex (transcription factor 9e-68
1xbr_A184 Protein (T protein); complex (transcription factor 2e-12
2x6u_A203 T-box transcription factor TBX5; developmental pro 9e-64
2x6u_A203 T-box transcription factor TBX5; developmental pro 3e-12
1h6f_A193 T-box transcription factor TBX3; transcription fac 5e-62
1h6f_A193 T-box transcription factor TBX3; transcription fac 6e-11
4a04_A203 T-box transcription factor TBX1; transcription, T- 1e-55
4a04_A203 T-box transcription factor TBX1; transcription, T- 1e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>1xbr_A Protein (T protein); complex (transcription factor/DNA), transcription factor, DNA-binding protein, transcription/DNA complex; HET: DNA; 2.50A {Xenopus laevis} SCOP: b.2.5.4 Length = 184 Back     alignment and structure
 Score =  209 bits (532), Expect = 9e-68
 Identities = 129/192 (67%), Positives = 153/192 (79%), Gaps = 11/192 (5%)

Query: 53  QVILEDLDLWLKFQSHTNEMIVTKNGRRMFPVVKVSIKGLEPDAMYTVLLEFLQIEQKRW 112
           +V LE+ DLW +F+  TNEMIVTKNGRRMFPV+KVS+ GL+P+AMYTVLL+F+  +  RW
Sbjct: 3   KVSLEERDLWTRFKELTNEMIVTKNGRRMFPVLKVSMSGLDPNAMYTVLLDFVAADNHRW 62

Query: 113 KYVNGEWVPAGKPEQPPMNAMYLHPESPNFGEHWMKDCVSFAKVKLTNHSNGSGQIMLNS 172
           KYVNGEWVP GKPE    + +Y+HP+SPNFG HWMKD VSF+KVKLTN  NG GQIMLNS
Sbjct: 63  KYVNGEWVPGGKPEPQAPSCVYIHPDSPNFGAHWMKDPVSFSKVKLTNKMNGGGQIMLNS 122

Query: 173 LHKYEPRIHLVKVATEQQIIKTFPFPETQFIAVTAYQNEEFIAVTAYQNEEVTSLKIKFN 232
           LHKYEPRIH+V+V   Q++I +  FPETQ           FIAVTAYQNEE+T+LKIK N
Sbjct: 123 LHKYEPRIHIVRVGGTQRMITSHSFPETQ-----------FIAVTAYQNEEITALKIKHN 171

Query: 233 PFAKAFLDAKEK 244
           PFAKAFLDAKE+
Sbjct: 172 PFAKAFLDAKER 183
>1xbr_A Protein (T protein); complex (transcription factor/DNA), transcription factor, DNA-binding protein, transcription/DNA complex; HET: DNA; 2.50A {Xenopus laevis} SCOP: b.2.5.4 Length = 184 Back     alignment and structure
>2x6u_A T-box transcription factor TBX5; developmental protein, DNA-binding, HOLT-ORAM-syndrome, IG-fold, nuclear protein, repressor; HET: PE4; 1.90A {Homo sapiens} PDB: 2x6v_A* Length = 203 Back     alignment and structure
>2x6u_A T-box transcription factor TBX5; developmental protein, DNA-binding, HOLT-ORAM-syndrome, IG-fold, nuclear protein, repressor; HET: PE4; 1.90A {Homo sapiens} PDB: 2x6v_A* Length = 203 Back     alignment and structure
>1h6f_A T-box transcription factor TBX3; transcription factor, TBX3, T-box transcription factor; 1.7A {Homo sapiens} SCOP: b.2.5.4 Length = 193 Back     alignment and structure
>1h6f_A T-box transcription factor TBX3; transcription factor, TBX3, T-box transcription factor; 1.7A {Homo sapiens} SCOP: b.2.5.4 Length = 193 Back     alignment and structure
>4a04_A T-box transcription factor TBX1; transcription, T-box proteins; HET: DNA; 2.58A {Homo sapiens} Length = 203 Back     alignment and structure
>4a04_A T-box transcription factor TBX1; transcription, T-box proteins; HET: DNA; 2.58A {Homo sapiens} Length = 203 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query328
1xbr_A184 Protein (T protein); complex (transcription factor 100.0
1h6f_A193 T-box transcription factor TBX3; transcription fac 100.0
2x6u_A203 T-box transcription factor TBX5; developmental pro 100.0
4a04_A203 T-box transcription factor TBX1; transcription, T- 100.0
2x6u_A203 T-box transcription factor TBX5; developmental pro 99.84
1h6f_A193 T-box transcription factor TBX3; transcription fac 99.83
1xbr_A184 Protein (T protein); complex (transcription factor 99.83
4a04_A203 T-box transcription factor TBX1; transcription, T- 99.82
>1xbr_A Protein (T protein); complex (transcription factor/DNA), transcription factor, DNA-binding protein, transcription/DNA complex; HET: DNA; 2.50A {Xenopus laevis} SCOP: b.2.5.4 Back     alignment and structure
Probab=100.00  E-value=3e-76  Score=524.48  Aligned_cols=183  Identities=70%  Similarity=1.185  Sum_probs=178.0

Q ss_pred             CCEEEecCchhHhhhcCCCCeeEEEeCCCcCCCeeEEEeeCCCCCCceeEEEEEEEccCcceEEeCCeEEECCCCCCCCC
Q psy14943         51 NPQVILEDLDLWLKFQSHTNEMIVTKNGRRMFPVVKVSIKGLEPDAMYTVLLEFLQIEQKRWKYVNGEWVPAGKPEQPPM  130 (328)
Q Consensus        51 ~I~V~L~n~~lW~~F~~~~~EMIVtk~GRrmFP~l~~~vsGLdP~~~Y~v~l~~~~~D~~ryk~~~~~W~~~~~~~~~~~  130 (328)
                      +|+|+|+|++||++||+++|||||||+||||||.|+|+|+||||++.|.|+|+|+++|++||||++|+|+++|++++..+
T Consensus         1 ~i~V~L~~~~LW~~F~~~~tEMIiTk~GRrmFP~l~~~v~GLdp~~~Y~v~l~~~~~D~~ryk~~~~~W~~~gkae~~~p   80 (184)
T 1xbr_A            1 ELKVSLEERDLWTRFKELTNEMIVTKNGRRMFPVLKVSMSGLDPNAMYTVLLDFVAADNHRWKYVNGEWVPGGKPEPQAP   80 (184)
T ss_dssp             CCEEEETTHHHHHHHHHHCCEEECBTTCEECSSCCEEEEECSCTTSEEEEEEEEEESSSCEEEEETTEEEEESSCCCCCC
T ss_pred             CCEEEEcCHHHHHhhcccCcEEEEecCCcccCCccEEEEeCCCcccCeEEEEEEEEccCceEEEECCcEEEcCccCCCCC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEcCCCcchhhhhhcCeeeeeeEEeeeCCCCCCceEeccccccccEEEEEEeCCccceEEEeecCcceEEEeccccc
Q psy14943        131 NAMYLHPESPNFGEHWMKDCVSFAKVKLTNHSNGSGQIMLNSLHKYEPRIHLVKVATEQQIIKTFPFPETQFIAVTAYQN  210 (328)
Q Consensus       131 ~~~~~Hp~~~~~G~~WM~~~vsF~klkiTN~~~~~~~I~L~s~hKY~PvL~I~~~~~~~~~~~~f~fpeTqFIaVT~~~~  210 (328)
                      .++|+|||||++|++||+++|+|++||||||.++.++|+|+|||||+|||||+++++..+.+.+|+||||+|||||+   
T Consensus        81 ~r~~~Hpdsp~~G~~WM~~~VsF~klKlTNn~~~~~~i~L~SmHKY~PrlhI~~~~~~~~~~~tf~FpeT~FiAVTa---  157 (184)
T 1xbr_A           81 SCVYIHPDSPNFGAHWMKDPVSFSKVKLTNKMNGGGQIMLNSLHKYEPRIHIVRVGGTQRMITSHSFPETQFIAVTA---  157 (184)
T ss_dssp             CCCEECTTCSEEHHHHHHSCEECTTCEEESSCCTTTCEECCSSSEEEEEEEEEEESSSSCCEEEEECGGGCEEEESS---
T ss_pred             cceEECCCCchhHHHHhhCCceeccccccccCCCCCeEEeccCceEEEEEEEEEeCCCcceEEEEECCCcEEEEEec---
Confidence            99999999999999999999999999999998888899999999999999999998877778999999999999999   


Q ss_pred             ceeeeeecccCccccccccccCCcchhhcccccc
Q psy14943        211 EEFIAVTAYQNEEVTSLKIKFNPFAKAFLDAKEK  244 (328)
Q Consensus       211 ~~fiav~~YqN~~I~~LKi~~NpfAkg~~~~~~~  244 (328)
                              |||++||+|||++|||||||||.+++
T Consensus       158 --------YQN~~It~LKi~~NpFAkgFr~~~~~  183 (184)
T 1xbr_A          158 --------YQNEEITALKIKHNPFAKAFLDAKER  183 (184)
T ss_dssp             --------CCCHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred             --------cCChhHhhhhhccCCCCcccCCCcCC
Confidence                    99999999999999999999998755
>1h6f_A T-box transcription factor TBX3; transcription factor, TBX3, T-box transcription factor; 1.7A {Homo sapiens} SCOP: b.2.5.4 Back     alignment and structure
>2x6u_A T-box transcription factor TBX5; developmental protein, DNA-binding, HOLT-ORAM-syndrome, IG-fold, nuclear protein, repressor; HET: PE4; 1.90A {Homo sapiens} PDB: 2x6v_A* Back     alignment and structure
>4a04_A T-box transcription factor TBX1; transcription, T-box proteins; HET: DNA; 2.58A {Homo sapiens} Back     alignment and structure
>2x6u_A T-box transcription factor TBX5; developmental protein, DNA-binding, HOLT-ORAM-syndrome, IG-fold, nuclear protein, repressor; HET: PE4; 1.90A {Homo sapiens} PDB: 2x6v_A* Back     alignment and structure
>1h6f_A T-box transcription factor TBX3; transcription factor, TBX3, T-box transcription factor; 1.7A {Homo sapiens} SCOP: b.2.5.4 Back     alignment and structure
>1xbr_A Protein (T protein); complex (transcription factor/DNA), transcription factor, DNA-binding protein, transcription/DNA complex; HET: DNA; 2.50A {Xenopus laevis} SCOP: b.2.5.4 Back     alignment and structure
>4a04_A T-box transcription factor TBX1; transcription, T-box proteins; HET: DNA; 2.58A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 328
d1xbra_184 b.2.5.4 (A:) T domain from Brachyury transcription 9e-88
d1xbra_184 b.2.5.4 (A:) T domain from Brachyury transcription 2e-17
d1xbra_184 b.2.5.4 (A:) T domain from Brachyury transcription 4e-05
d1h6fa_184 b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sa 5e-80
d1h6fa_184 b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sa 8e-16
d1h6fa_184 b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sa 3e-04
>d1xbra_ b.2.5.4 (A:) T domain from Brachyury transcription factor {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 184 Back     information, alignment and structure

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: T-box
domain: T domain from Brachyury transcription factor
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score =  259 bits (662), Expect = 9e-88
 Identities = 129/192 (67%), Positives = 153/192 (79%), Gaps = 11/192 (5%)

Query: 53  QVILEDLDLWLKFQSHTNEMIVTKNGRRMFPVVKVSIKGLEPDAMYTVLLEFLQIEQKRW 112
           +V LE+ DLW +F+  TNEMIVTKNGRRMFPV+KVS+ GL+P+AMYTVLL+F+  +  RW
Sbjct: 3   KVSLEERDLWTRFKELTNEMIVTKNGRRMFPVLKVSMSGLDPNAMYTVLLDFVAADNHRW 62

Query: 113 KYVNGEWVPAGKPEQPPMNAMYLHPESPNFGEHWMKDCVSFAKVKLTNHSNGSGQIMLNS 172
           KYVNGEWVP GKPE    + +Y+HP+SPNFG HWMKD VSF+KVKLTN  NG GQIMLNS
Sbjct: 63  KYVNGEWVPGGKPEPQAPSCVYIHPDSPNFGAHWMKDPVSFSKVKLTNKMNGGGQIMLNS 122

Query: 173 LHKYEPRIHLVKVATEQQIIKTFPFPETQFIAVTAYQNEEFIAVTAYQNEEVTSLKIKFN 232
           LHKYEPRIH+V+V   Q++I +  FPETQ           FIAVTAYQNEE+T+LKIK N
Sbjct: 123 LHKYEPRIHIVRVGGTQRMITSHSFPETQ-----------FIAVTAYQNEEITALKIKHN 171

Query: 233 PFAKAFLDAKEK 244
           PFAKAFLDAKE+
Sbjct: 172 PFAKAFLDAKER 183
>d1xbra_ b.2.5.4 (A:) T domain from Brachyury transcription factor {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 184 Back     information, alignment and structure
>d1xbra_ b.2.5.4 (A:) T domain from Brachyury transcription factor {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 184 Back     information, alignment and structure
>d1h6fa_ b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sapiens) [TaxId: 9606]} Length = 184 Back     information, alignment and structure
>d1h6fa_ b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sapiens) [TaxId: 9606]} Length = 184 Back     information, alignment and structure
>d1h6fa_ b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sapiens) [TaxId: 9606]} Length = 184 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query328
d1xbra_184 T domain from Brachyury transcription factor {Afri 100.0
d1h6fa_184 T-box protein 3, tbx3 {Human (Homo sapiens) [TaxId 100.0
d1xbra_184 T domain from Brachyury transcription factor {Afri 99.8
d1h6fa_184 T-box protein 3, tbx3 {Human (Homo sapiens) [TaxId 99.79
>d1xbra_ b.2.5.4 (A:) T domain from Brachyury transcription factor {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: T-box
domain: T domain from Brachyury transcription factor
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=100.00  E-value=1.6e-75  Score=516.16  Aligned_cols=183  Identities=70%  Similarity=1.185  Sum_probs=177.7

Q ss_pred             CCEEEecCchhHhhhcCCCCeeEEEeCCCcCCCeeEEEeeCCCCCCceeEEEEEEEccCcceEEeCCeEEECCCCCCCCC
Q psy14943         51 NPQVILEDLDLWLKFQSHTNEMIVTKNGRRMFPVVKVSIKGLEPDAMYTVLLEFLQIEQKRWKYVNGEWVPAGKPEQPPM  130 (328)
Q Consensus        51 ~I~V~L~n~~lW~~F~~~~~EMIVtk~GRrmFP~l~~~vsGLdP~~~Y~v~l~~~~~D~~ryk~~~~~W~~~~~~~~~~~  130 (328)
                      +|+|+|+|++||++||+++|||||||+||||||.|+|+|+||||+++|.|.|+|+++|++||+|.+|+|+++|++++..+
T Consensus         1 ~i~v~L~~~~LW~~F~~~~tEMIITk~GRrmFP~l~~~vsGLdp~~~Y~v~l~~~~~D~~ryky~~~~W~~~g~~e~~~~   80 (184)
T d1xbra_           1 ELKVSLEERDLWTRFKELTNEMIVTKNGRRMFPVLKVSMSGLDPNAMYTVLLDFVAADNHRWKYVNGEWVPGGKPEPQAP   80 (184)
T ss_dssp             CCEEEETTHHHHHHHHHHCCEEECBTTCEECSSCCEEEEECSCTTSEEEEEEEEEESSSCEEEEETTEEEEESSCCCCCC
T ss_pred             CeEEEecCHHHHHHhccCCCEEEEecCCcccCCceEEEEECCCcCccEEEEEEEEEccCcEEEEECCcEEECCccCCCCC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEcCCCcchhhhhhcCeeeeeeEEeeeCCCCCCceEeccccccccEEEEEEeCCccceEEEeecCcceEEEeccccc
Q psy14943        131 NAMYLHPESPNFGEHWMKDCVSFAKVKLTNHSNGSGQIMLNSLHKYEPRIHLVKVATEQQIIKTFPFPETQFIAVTAYQN  210 (328)
Q Consensus       131 ~~~~~Hp~~~~~G~~WM~~~vsF~klkiTN~~~~~~~I~L~s~hKY~PvL~I~~~~~~~~~~~~f~fpeTqFIaVT~~~~  210 (328)
                      .++|+|||||.+|++||+++|+|++|||||+.++.++|.|+|||||+|||||+++++....+.+|+||||+|||||+   
T Consensus        81 ~~~~~Hpdsp~tG~~WM~~~i~F~klKlTN~~~~~~~i~L~SmHKYqPrl~I~~~~~~~~~~~~f~FpeT~FiaVTa---  157 (184)
T d1xbra_          81 SCVYIHPDSPNFGAHWMKDPVSFSKVKLTNKMNGGGQIMLNSLHKYEPRIHIVRVGGTQRMITSHSFPETQFIAVTA---  157 (184)
T ss_dssp             CCCEECTTCSEEHHHHHHSCEECTTCEEESSCCTTTCEECCSSSEEEEEEEEEEESSSSCCEEEEECGGGCEEEESS---
T ss_pred             CceEECCCCCcCHHHHhhCccccceeeeeccCCCCCceEEecccceeeeEEEEEeCCCccceeEEEcCCeEEEEEee---
Confidence            99999999999999999999999999999998888999999999999999999998877788999999999999999   


Q ss_pred             ceeeeeecccCccccccccccCCcchhhcccccc
Q psy14943        211 EEFIAVTAYQNEEVTSLKIKFNPFAKAFLDAKEK  244 (328)
Q Consensus       211 ~~fiav~~YqN~~I~~LKi~~NpfAkg~~~~~~~  244 (328)
                              |||++|++|||++|||||||||...+
T Consensus       158 --------YQN~~It~lKi~~NpFAkgfR~~~~r  183 (184)
T d1xbra_         158 --------YQNEEITALKIKHNPFAKAFLDAKER  183 (184)
T ss_dssp             --------CCCHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred             --------cCcHHHhHHHhccCcccccccccccC
Confidence                    99999999999999999999997544
>d1h6fa_ b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xbra_ b.2.5.4 (A:) T domain from Brachyury transcription factor {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1h6fa_ b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure